BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14486
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/477 (46%), Positives = 303/477 (63%), Gaps = 27/477 (5%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
+++I+NS +++K+IF PI GKV LYVCG T YDY H+GH R I+FD V R+LR Y+
Sbjct: 4 SVKIFNSLTKQKEIFKPIESGKVKLYVCGXTVYDYXHIGHGRSWIIFDXVVRYLRXRGYE 63
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
VT+VRNITDIDDKII A +N ES L RFI+ ED L + PD +P AT Y+P+
Sbjct: 64 VTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPE 123
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR-LXXXXXXXXXXXXXXXX 181
I+K+I+KL+ N AY NG DV + VR F +YGKLS R L
Sbjct: 124 IIKLIQKLLDNQYAYTGQNG----DVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKR 179
Query: 182 DPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241
DPLDF LWK +K P E +W+S WG GRPGWHIECSA S +LG FDIHGGG DLKFP
Sbjct: 180 DPLDFVLWKKAK---PGEPKWDSPWGEGRPGWHIECSAXSSSILGQPFDIHGGGLDLKFP 236
Query: 242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
HHENEIAQSE + FV W H+G ++IN +K SKS GN +IR+ LK+ + EV+R+F+
Sbjct: 237 HHENEIAQSEAGEEKPFVKLWXHAGLLEINKEKXSKSLGNIISIREALKESDVEVLRYFL 296
Query: 302 LRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDF 361
L HYR+ ++YS+ L + +L R YLA++ +P +N++K + RF A +DDF
Sbjct: 297 LSGHYRNPLSYSKENLENGRLALERFYLALRGLPVVNHEK----TSSYTDRFYEAXDDDF 352
Query: 362 NTPVAISILFDLANIINK-------NKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTE 414
NTP+A ++LF+ IN+ K+ +A +L+ LGN GLL+YS ++FL+
Sbjct: 353 NTPIAFALLFEXVREINRFRDNNQIEKAAVLAAELKCLGNIFGLLQYSPEQFLQGA---- 408
Query: 415 RKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
KK + E IK I R+EAR +K++ AD+IR +L + G+ +ED +G T WR+
Sbjct: 409 -KKEADVQE--IKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDG-TSWRQ 461
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 410 bits (1053), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/475 (46%), Positives = 291/475 (61%), Gaps = 23/475 (4%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L+I+N+ +R+K+ F PI G+V +YVCGIT YD CH+GH R + FD+V R+LR Y +
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
YVRNITDIDDKII A +N ES + R I +D L+I PD +P AT++I +I
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR-LXXXXXXXXXXXXXXXXD 182
+++ E+LI G AY +NG DV + V YG LS + L +
Sbjct: 122 IELTEQLIAKGHAYVADNG----DVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRN 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
P+DF LWK+SK +P W S WGAGRPGWHIECSAM+C LG+HFDIHGGG DL FPH
Sbjct: 178 PMDFVLWKMSKEGEP---SWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPH 234
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQS A+ ++VNYWMHSG V ++ +KMSKS GNF T+RD+LK Y+ E +R+F++
Sbjct: 235 HENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLM 294
Query: 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFN 362
HYRS +NYSE L A+ +L RLY A++ K E RFI AM+DDFN
Sbjct: 295 SGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAG---GEAFEARFIEAMDDDFN 351
Query: 363 TPVAISILFDLANIINKNKSI------KMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERK 416
TP A S+LFD+A +N+ K+ MA LR L LGLLE + FL++ +
Sbjct: 352 TPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDS 411
Query: 417 KNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
+ +I+ I R +ARK K++ AD R L GI+LED P G T WRR
Sbjct: 412 EVA-----EIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTT-WRR 460
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/376 (32%), Positives = 187/376 (49%), Gaps = 22/376 (5%)
Query: 3 TLRIYNSFSRKKQIFYPITPGK-VSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNY 61
LR+++S R+ + P+TPG ++YVCGIT YD HLGHA + FD+V R +
Sbjct: 20 ALRLFDSADRQVR---PVTPGPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGH 76
Query: 62 DVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIP 121
V YV+N+TD+DD + A+++ +TL R + +ED L + PP AT+ I
Sbjct: 77 TVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIA 136
Query: 122 QILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSG-----RLXXXXXXXXXXX 176
++++M+EKL+ +G AY + + DV + +G SG L
Sbjct: 137 EVVEMVEKLLASGAAYIVEDAEYP-DVYFRADATAQFGYESGYDRDTMLTLFAERGGDPD 195
Query: 177 XXXXXDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQ 236
D LD LW+ + P E W S +G GRPGWH+ECSA++ +G+ DI GGG
Sbjct: 196 RPGKSDQLDALLWRAER---PGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGS 252
Query: 237 DLKFPHHENEIAQSEGAY-KHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDL-LKKYNP 294
DL FPHHE A +E + +F +++H+G + + KMSKS GN + L + +P
Sbjct: 253 DLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDP 312
Query: 295 EVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFI 354
IR + HYR +S L+ A L R A + +I R
Sbjct: 313 SAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPEAPDATDVI-------ARVR 365
Query: 355 IAMNDDFNTPVAISIL 370
+ DD +TP A++ L
Sbjct: 366 QYLADDLDTPKALAAL 381
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 136/491 (27%), Positives = 232/491 (47%), Gaps = 48/491 (9%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L++YN+ R K V +Y CG T Y+Y H+G+ R I D++ + LR Y V
Sbjct: 24 LKLYNT--RTKDFSELTNFENVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKV 81
Query: 64 TYVRNITDI----------DDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQ 113
Y NITDI +DK+ A++ ++ ++ F +A D L+I PD
Sbjct: 82 NYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKV 141
Query: 114 PCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSG--RLXXXXXX 171
A+ +IP ++++++ L + Y +N G+V + F +YG+++G +
Sbjct: 142 LVASKHIPIMIEVVKILEEKKITYFSN-----GNVYFDTSCFKSYGEMAGIDLIDKDMTL 196
Query: 172 XXXXXXXXXXDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDI 231
+ DF LW + E++W+S WG G P WH+EC+AM+ DI
Sbjct: 197 PRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDI 256
Query: 232 HGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK 291
H GG D HH NEIA +E K+ + ++H F+ ++ KMSKS GNF T++DL +
Sbjct: 257 HLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQ 316
Query: 292 -YNPEVIRFFILRSHYRSTINYSEIYLN---YAKKSLI-RLYLAIKDIPKINYKKI---- 342
++P R+ L SHYR+ + +S L A+++LI +L + + ++ +
Sbjct: 317 NFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDL 376
Query: 343 ----IDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGL 398
+ + + F+ ++ D N +++L++ I K+ ++ +LR
Sbjct: 377 KNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWE----IIKSDNLSFVSKLR-------- 424
Query: 399 LEYSSDEFLKNNIYTERKKNVN----YSENDIKLKIYFRSEARKRKNFLEADKIRQELVN 454
L + DE + N+ E KN+ + ++K I R A+ KNF AD+IR
Sbjct: 425 LAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFFAK 484
Query: 455 NGIILEDMPNG 465
G +L D G
Sbjct: 485 KGFVLVDTKEG 495
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 22 PGKVS---LYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKI 76
PG +S Y+ AY H+GHA +I D + R+ R+N DV ++ + K+
Sbjct: 19 PGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKM 78
Query: 77 IACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDY-QPCATNYIPQILKMIEKLIFNGL 135
+ A+K + + L R A + + +L+ DY + + + + ++ NG
Sbjct: 79 LQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGD 138
Query: 136 AYQNNNGKINGDVNYSVRNFLNYGK 160
Y+ YSVR+ YG+
Sbjct: 139 IYKGGYAGW-----YSVRDEAYYGE 158
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303
GF+ +KMSKS GN +L+++Y + +R+F++R
Sbjct: 313 GFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMR 350
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSR 93
HLGHA +V D + RW R++ Y ++ + + + A+ E K R
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDR 73
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 271 NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
+ +KMSK+ GN LL+KY + +R+++LR
Sbjct: 294 DGRKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSR 93
HLGHA +V D + RW R++ Y ++ + + + A+ E K R
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDR 73
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 271 NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
+ +KMSK+ GN LL+KY + +R+++LR
Sbjct: 294 DGRKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSR 93
HLGHA +V D + RW R++ Y ++ + + + A+ E K R
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDR 73
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 271 NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
+ +KMSK+ GN LL+KY + +R+++LR
Sbjct: 294 DGRKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 36 DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSR 93
D HLGHA I D + R+ R+ +YDV ++ + KI A++ S K L R
Sbjct: 18 DVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDR 75
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
G+ + KKMSK+ GN +++++Y + +R+F+LR
Sbjct: 287 GWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLRE 325
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 232 HGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK 291
H G+D+ + H A EG+ K N ++H G+V +N KMSKS G F L
Sbjct: 291 HFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNH 349
Query: 292 YNPEVIRFF 300
++ + +R++
Sbjct: 350 FDADSLRYY 358
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 232 HGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK 291
H G+D+ + H A EG+ K N ++H G+V +N KMSKS G F L
Sbjct: 291 HFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNH 349
Query: 292 YNPEVIRFF 300
++ + +R++
Sbjct: 350 FDADSLRYY 358
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 232 HGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK 291
H G+D+ + H A EG+ K N ++H G+V +N KMSKS G F L
Sbjct: 291 HFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNH 349
Query: 292 YNPEVIRFF 300
++ + +R++
Sbjct: 350 FDADSLRYY 358
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 232 HGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK 291
H G+D+ + H A EG+ K N ++H G+V +N KMSKS G F L
Sbjct: 292 HFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNH 350
Query: 292 YNPEVIRFF 300
++ + +R++
Sbjct: 351 FDADSLRYY 359
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 23 GKVSLYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACA 80
G Y+ AY H+GHA I D + R+ R++ YDV Y+ K+ A
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETA 69
Query: 81 KKNNESIKTLTSR 93
K L R
Sbjct: 70 AKEGIPAAELARR 82
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303
G++ +KMSKS GN +L+ + + +R+F+LR
Sbjct: 302 GWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLR 339
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR-SHYRSTINYSEIYLNYAKKSL 324
GF + +KMSKS GN D +++ +V+R +I+ + + S ++ + +K +
Sbjct: 642 GFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQI 701
Query: 325 IRLYLAIKDIPKINYKKIIDLNE 347
R Y I + K ++L +
Sbjct: 702 ERFYELISQFAEYEVKGNVELKD 724
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 22 PGKVSLYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIAC 79
P + Y+ Y + H+GHAR + D++ R+ R+ Y+V + I+
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGI 90
Query: 80 AKK-NNESIKTL 90
A++ N KT+
Sbjct: 91 AERIKNRDPKTI 102
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR-SHYRSTINYSEIYLNYAKKSL 324
GF + +KMSKS GN D +++ +V+R +I+ + + S ++ + +K +
Sbjct: 642 GFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQI 701
Query: 325 IRLYLAIKDIPKINYKKIIDLNE 347
R Y I + K ++L +
Sbjct: 702 ERFYELISQFAEYEVKGNVELKD 724
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 22 PGKVSLYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIAC 79
P + Y+ Y + H+GHAR + D++ R+ R+ Y+V + I+
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGI 90
Query: 80 AKK-NNESIKTL 90
A++ N KT+
Sbjct: 91 AERIKNRDPKTI 102
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 248 AQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFF 300
A EG+ K N ++H G+V +N KMSKS G F L ++ + +R++
Sbjct: 320 AMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYY 371
>pdb|4EUO|A Chain A, Structure Of Atu4243-Gaba Sensor
Length = 320
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 62 DVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIP 121
+ ++ +NIT D ++ KN ++ +FI +L Q AT Y P
Sbjct: 215 ETSWAQNITAADSLVVPKGTKNKDA----AMKFI------ALATSAQAQADMATATGYAP 264
Query: 122 ---QILKMIEKLIFNGLAYQNNNGKINGDVNY 150
+ K+++ I L Q ++N D+NY
Sbjct: 265 VNIESAKLMDPKIAKSLPDQQTESQVNADMNY 296
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 10/140 (7%)
Query: 190 KVSKNNDPYEIRWNSK-WGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH-HENEI 247
++ ++ D ++ ++S W GW E + + G D+ G D+ F E+
Sbjct: 445 RLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPG---DVLVTGYDILFLWVSRMEV 501
Query: 248 AQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL----- 302
+ + F +H + +KMSKS GN +++++Y + +RF ++
Sbjct: 502 SGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATG 561
Query: 303 RSHYRSTINYSEIYLNYAKK 322
R + + E+ N+A K
Sbjct: 562 GQDIRLDLRWLEMARNFANK 581
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 250 SEGAYKHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRS 308
+ G +KF+ + GFV KKMSKS GN ++K+ ++ R ++ + Y +
Sbjct: 573 TRGVSPYKFL---LSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLA 629
Query: 309 TINYSE 314
+ S+
Sbjct: 630 DVRISD 635
>pdb|3HRD|C Chain C, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|G Chain G, Crystal Structure Of Nicotinate Dehydrogenase
Length = 296
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 386 AKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSE----NDIKLKIYFRSEARKRKN 441
+ Q+R LG G L SS + T V +KL +F E KR+N
Sbjct: 102 SPQIRNLGTIGGNLSTSSVAGDGVSAMTTLDATVVLESVRGTRQMKLTDFFDGEGFKRRN 161
Query: 442 FLEADKIRQELV 453
LEAD+I E++
Sbjct: 162 ALEADEIMTEVI 173
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 38 CHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDI 72
H+GHAR I+ D++ R LR Y+V I D+
Sbjct: 134 LHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 258 FVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
F N H + +KMSKS GN D+++K+ + +R++I
Sbjct: 575 FKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYI 618
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,493,584
Number of Sequences: 62578
Number of extensions: 609730
Number of successful extensions: 1410
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 47
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)