BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14486
(472 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6SZV1|SYC_JANMA Cysteine--tRNA ligase OS=Janthinobacterium sp. (strain Marseille)
GN=cysS PE=3 SV=1
Length = 464
Score = 583 bits (1504), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/472 (57%), Positives = 350/472 (74%), Gaps = 10/472 (2%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
MS L+IYN+ +R+KQ F PI PGKV +YVCG+T YDYCH+GHAR+M+VFD+VQRWLR +
Sbjct: 1 MSALKIYNTLAREKQPFTPIEPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y+V YVRNITDIDDKII A +N ESI LT RFI A ED+ L +Q PD++P ATNY+
Sbjct: 61 YEVNYVRNITDIDDKIIKRAAENGESISALTQRFIDAMDEDAAALGVQKPDHEPRATNYV 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L +IE L NGLAY++++G DVNYSVR+F YGKLSG+ + + + N
Sbjct: 121 PQMLGLIEALERNGLAYKSSDG----DVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTG 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK SK +P E++W SKWG+GRPGWHIECSAM+C LLG FDIHGGG DL+
Sbjct: 177 KRDPLDFVLWKSSKEAEPDEVKWASKWGSGRPGWHIECSAMACELLGQQFDIHGGGADLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA +H FVNYWMH+GFV+++N+KMSKS GNF TIR++L KY+ EV+RF
Sbjct: 237 FPHHENEIAQSEGASQHTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLAKYDSEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FILR+HYRS +NYS+ +L+ A+ +L R+Y A+K + + +D+ E HA RF AMND
Sbjct: 297 FILRAHYRSQLNYSDAHLDDARNALTRMYTALKGVAP--DQAALDMTEAHALRFAEAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTP+A+++LF+LAN INK KS +A+QL GL +GLL+ + +FL + +
Sbjct: 355 DFNTPLAVAVLFELANEINKTKSPALARQLVGLAGIVGLLQRPAQQFLHAGLANGEDGEM 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
E + +I R A+K KNF EAD+IR EL+ GIILED P G TEWRR
Sbjct: 415 ---ETFVVEQIEARVNAKKAKNFAEADRIRAELLEKGIILEDKPGGLTEWRR 463
>sp|A4G4M2|SYC_HERAR Cysteine--tRNA ligase OS=Herminiimonas arsenicoxydans GN=cysS PE=3
SV=1
Length = 462
Score = 576 bits (1484), Expect = e-163, Method: Compositional matrix adjust.
Identities = 274/472 (58%), Positives = 354/472 (75%), Gaps = 12/472 (2%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
MS L+IYN+ +R+KQ+F PI PGKV +YVCG+T YDYCH+GHAR+M+VFD+VQRWLR +
Sbjct: 1 MSALKIYNTLAREKQLFTPIDPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
+DVTYVRNITDIDDKII A +N E+I LT RFI A ED+ L +Q PD++P ATNY+
Sbjct: 61 FDVTYVRNITDIDDKIIKRAAENGETISQLTQRFIDAMDEDAAALGVQKPDHEPRATNYV 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L +I+ L NGLAY+ +GDVNYSVR+F YGKLSG+ + + + N
Sbjct: 121 PQMLGLIDMLERNGLAYK----AADGDVNYSVRDFAGYGKLSGKSLDDLRAGERVDVNTG 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K DPLDF LWK SK N+P E++W+SKWG+GRPGWHIECSAM+C LLG FDIHGGG DL+
Sbjct: 177 KHDPLDFVLWKSSKENEPEEVKWSSKWGSGRPGWHIECSAMACELLGEQFDIHGGGADLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA H FVNYWMH+GFV+++N+KMSKS GNF TIR++L+K++ EV+RF
Sbjct: 237 FPHHENEIAQSEGASGHTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLEKFDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FILR+HYRS +NYS+ +L+ A+ +L R+Y A+KD+ + +D+ E HA RFI AMND
Sbjct: 297 FILRAHYRSQLNYSDAHLDDARNALTRMYTALKDVAPDHLP--LDMTEAHAVRFIDAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTP+AI++LF+LAN IN+ KS +A+QL GL +GLL+ + +FL +
Sbjct: 355 DFNTPLAIAVLFELANEINREKSPVLARQLIGLAGIVGLLQRPAQQFLHAGL-----AGA 409
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
+ E I +I R++A+K KNF EAD+IR L+ GIILED P G TEWRR
Sbjct: 410 DEMETLIIGQIAARADAKKAKNFAEADRIRAALLEKGIILEDKPGGLTEWRR 461
>sp|Q0KCA9|SYC_CUPNH Cysteine--tRNA ligase OS=Cupriavidus necator (strain ATCC 17699 /
H16 / DSM 428 / Stanier 337) GN=cysS PE=3 SV=1
Length = 462
Score = 569 bits (1467), Expect = e-161, Method: Compositional matrix adjust.
Identities = 269/472 (56%), Positives = 340/472 (72%), Gaps = 12/472 (2%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M L IYN+ +R+KQ F PI PGKV +YVCG+T YDYCH+GHAR+M+VFD+V RWLR
Sbjct: 1 MQLLNIYNTLAREKQPFVPIEPGKVRMYVCGMTVYDYCHVGHARVMVVFDMVHRWLRAAG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y+VTYV+NITDIDDKII A +N E+I LT+RFI+ ED+ L + PD++P AT+Y+
Sbjct: 61 YEVTYVQNITDIDDKIIRRAAENGETIGELTTRFIQYMHEDAAALGVIRPDHEPRATDYV 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MI KL GLAYQ ++G DVNYSVR F YGKLSG+ + + N+
Sbjct: 121 PQMLDMIGKLEAKGLAYQASDG----DVNYSVRKFAGYGKLSGKSLEDLRAGERVSANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K ++P E +W+SKWGAGRPGWHIECSAMSC LLG HFDIHGGG DL+
Sbjct: 177 KQDPLDFVLWKSAKASEPPESKWDSKWGAGRPGWHIECSAMSCTLLGEHFDIHGGGADLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVN WMH+GFV+IN++KMSKS GNF TIR++LK Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGASGKPFVNMWMHNGFVRINDEKMSKSLGNFFTIREVLKSYDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FILR+HYRS +NYS+ +L+ A+ +L RLY A+KD +D +EPHA+RF AM D
Sbjct: 297 FILRAHYRSPLNYSDAHLDDARHALTRLYTALKDSQPGGCA--VDWDEPHARRFAEAMGD 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTP+A+S+LFDLA+ IN+ S A+QL+GL LGLLE FL+ + +
Sbjct: 355 DFNTPIAMSVLFDLASEINRTGSTAAARQLKGLAGTLGLLERDPHTFLQGG-----RSDD 409
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
S I+ I R A+ +NF EAD+IR +L+ GI+LED P G TEWRR
Sbjct: 410 GISPEQIETLIAARKTAKVERNFAEADRIRAQLLEAGIVLEDKPGGATEWRR 461
>sp|Q473D3|SYC_CUPPJ Cysteine--tRNA ligase OS=Cupriavidus pinatubonensis (strain JMP134
/ LMG 1197) GN=cysS PE=3 SV=1
Length = 462
Score = 567 bits (1460), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/472 (57%), Positives = 341/472 (72%), Gaps = 12/472 (2%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M L IYN+ +R+KQ F PI PGKV +YVCG+T YDYCH+GHAR+M+VFD+V RWLR
Sbjct: 1 MQLLNIYNTLAREKQPFVPIEPGKVRMYVCGMTVYDYCHVGHARVMVVFDMVHRWLRAAG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
YDVT+V+NITDIDDKII A +N E+I LT+RFI+ ED+ L I PD++P AT+Y+
Sbjct: 61 YDVTFVQNITDIDDKIIRRAAENGETIGQLTTRFIQYMHEDADALGIVRPDHEPRATDYV 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L +I KL NGLAYQ +GDVNYSVR F YGKLSG+ + + N+
Sbjct: 121 PQMLDLIGKLEANGLAYQ----ATDGDVNYSVRKFDGYGKLSGKSLEDLRAGERVTANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K ++P E +WNSKWG GRPGWHIECSAMSC LLG HFDIHGGG DL+
Sbjct: 177 KQDPLDFVLWKSAKESEPPESKWNSKWGMGRPGWHIECSAMSCTLLGEHFDIHGGGADLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVN WMH+GFV++N++KMSKS GNF TIR++LK+Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGASGKPFVNVWMHNGFVRVNDEKMSKSLGNFFTIREVLKEYDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FILR+HYRS +NYS+ +L+ A+ +L RLY A+KD Y +D E HAKRF AM D
Sbjct: 297 FILRAHYRSPLNYSDAHLDDARHALTRLYTALKDTQPGGYA--VDWEEAHAKRFAEAMCD 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTP+A+S+LFDLA+ +N+ S A+QL+GL LGLLE FL+ KK
Sbjct: 355 DFNTPIAVSVLFDLASEVNRTGSSVAARQLKGLAGTLGLLERDPHTFLQGG-----KKVD 409
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
S ++I+ I R A+ +NF EAD+IR +L+ GI+LED P G TEWRR
Sbjct: 410 GPSPDEIEGLIAARKTAKAERNFAEADRIRADLLAAGIVLEDKPGGATEWRR 461
>sp|B2U9P8|SYC_RALPJ Cysteine--tRNA ligase OS=Ralstonia pickettii (strain 12J) GN=cysS
PE=3 SV=1
Length = 463
Score = 561 bits (1445), Expect = e-159, Method: Compositional matrix adjust.
Identities = 267/472 (56%), Positives = 342/472 (72%), Gaps = 11/472 (2%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +L+IYN+ +R+KQ F PI PG+V +YVCG+T YDYCH+GHAR+M+VFD+VQRWLR
Sbjct: 1 MESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRAAG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
YDVTYVRNITDIDDKII A +N E++ LT RFI A ED+ L +Q PD++P AT Y+
Sbjct: 61 YDVTYVRNITDIDDKIIKRAVENGETMSALTGRFIAAMHEDADALGVQRPDHEPRATEYV 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MI +L NGLAYQ +GDVNY+VR F YGKLSG+ + + N+
Sbjct: 121 PQMLSMIGRLQTNGLAYQ----ATDGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K ++P E RW S WG GRPGWHIECSAMSC LLG HFD+HGGG DL+
Sbjct: 177 KQDPLDFVLWKSAKADEPAESRWASPWGEGRPGWHIECSAMSCELLGEHFDLHGGGADLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVN WMH+GFV++N++KMSKS GNF TIRD+LK Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGKTFVNMWMHNGFVRVNDEKMSKSLGNFFTIRDVLKVYDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FILRSHYRS +NYS+ +L+ A+ +L RLY A+KD+P K D +E H KRF+ AMND
Sbjct: 297 FILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAVGAK-PDWSESHGKRFLEAMND 355
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTPVA+S+LF+LA+ +NK +S ++A QL L +GLL FL+ + + V
Sbjct: 356 DFNTPVAVSVLFELASEVNKTRSPELASQLAALAGVIGLLGRDPHVFLQGGVSAD---GV 412
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
+ +E ++ +I R A+ ++F AD IR +L+ GI+LED P G TEWRR
Sbjct: 413 DAAE--VEARIEERRAAKAARDFARADAIRADLLAAGIVLEDKPGGLTEWRR 462
>sp|B3R4D1|SYC_CUPTR Cysteine--tRNA ligase OS=Cupriavidus taiwanensis (strain R1 / LMG
19424) GN=cysS PE=3 SV=1
Length = 462
Score = 561 bits (1445), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/472 (57%), Positives = 341/472 (72%), Gaps = 12/472 (2%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M L IYN+ +R+KQ F PI PGKV +YVCG+T YDYCH+GHAR+M+VFD+V RWLR
Sbjct: 1 MQPLNIYNTLAREKQPFVPIEPGKVRMYVCGMTVYDYCHVGHARVMVVFDMVHRWLRAAG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y+VTYV+NITDIDDKII A +N E+I LT+RFI+ ED+ L + PD++P AT+Y+
Sbjct: 61 YEVTYVQNITDIDDKIIRRAVENGETIGELTTRFIQYMHEDAAALGVIRPDHEPRATDYV 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MI KL GLAYQ ++G DVNYSVR F YGKLSG+ + + N+
Sbjct: 121 PQMLDMIGKLEAKGLAYQASDG----DVNYSVRKFDGYGKLSGKSLEDLRAGERVSANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K ++P E +W+SKWGAGRPGWHIECSAMSC LLG HFDIHGGG DL+
Sbjct: 177 KQDPLDFVLWKSAKASEPPESKWDSKWGAGRPGWHIECSAMSCALLGEHFDIHGGGADLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVN WMH+GFV+IN++KMSKS GNF TIR++LK Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGASGKPFVNLWMHNGFVRINDEKMSKSLGNFFTIREVLKAYDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FILR+HYRS +NYS+ +L+ A+ +L RLY A+KD +D +EPHAKRF AM D
Sbjct: 297 FILRAHYRSPLNYSDAHLDDARHALTRLYTALKDSQPGGCA--VDWDEPHAKRFAEAMGD 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTP+A+S+LFDLA+ IN+ S A+QL+GL LGLLE FL+ K
Sbjct: 355 DFNTPIAMSVLFDLASEINRTGSTAAARQLKGLAGTLGLLERDPHTFLQGG-----KSAD 409
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
S ++I+ I R A+ +NF EAD+IR +L+ GI+LED P G TEWRR
Sbjct: 410 GPSPDEIEKLIAARKAAKAERNFAEADRIRAQLLEAGIVLEDKPGGATEWRR 461
>sp|Q8Y077|SYC_RALSO Cysteine--tRNA ligase OS=Ralstonia solanacearum (strain GMI1000)
GN=cysS PE=3 SV=1
Length = 465
Score = 557 bits (1436), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/472 (56%), Positives = 341/472 (72%), Gaps = 9/472 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +L+IYN+ +R+KQ F PI PG+V +YVCG+T YDYCH+GHAR+M+VFD+VQRWLR +
Sbjct: 1 MESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
YDVTYVRNITDIDDKII A +N E+I LT+RFI A ED+ L +Q PD +P AT Y+
Sbjct: 61 YDVTYVRNITDIDDKIIKRAVENGETIGALTNRFIAAMHEDADALGVQRPDREPRATEYV 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MI +L NGLAYQ +GDVNY+VR F YGKLSG+ + + N+
Sbjct: 121 PQMLSMIGRLQDNGLAYQ----AADGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K ++P E RW S WG GRPGWHIECSAMSC LLG+HFD+HGGG DL+
Sbjct: 177 KQDPLDFVLWKSAKADEPAESRWASPWGEGRPGWHIECSAMSCDLLGTHFDLHGGGADLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVN WMH+GFV++N++KMSKS GNF TIRD+LK Y+PEV+RF
Sbjct: 237 FPHHENEIAQSEGASGSTFVNTWMHNGFVRVNDEKMSKSLGNFFTIRDVLKVYDPEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FILRSHYRS +NYS+++L+ A+ +L RLY A+KD+P + D NEPH KRF AM+D
Sbjct: 297 FILRSHYRSDLNYSDVHLDDARHALTRLYTALKDVPA-EAQARPDWNEPHGKRFREAMHD 355
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTPVA+++LF+LA +NK +S +A QL LG +GLL FL+ +
Sbjct: 356 DFNTPVAMAVLFELATEVNKTRSPALASQLAALGGVMGLLVRDPHAFLQGGVGA---AAD 412
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
+++ +I R A+ ++F AD IR +L+ GI+LED P G TEWRR
Sbjct: 413 GLDAAEVEARIEARRAAKAARDFARADGIRADLLAAGIVLEDKPGGVTEWRR 464
>sp|A4JFD0|SYC_BURVG Cysteine--tRNA ligase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=cysS PE=3 SV=1
Length = 465
Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust.
Identities = 265/473 (56%), Positives = 342/473 (72%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ+F P PG+V +YVCGIT YDYCH+GHAR+++VFD+VQRWLR
Sbjct: 1 MESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITD+DDKII A +N ESIK+LT RFI A +D L IQ PD +P AT +I
Sbjct: 61 YRVTYVRNITDVDDKIIRRAVENGESIKSLTDRFIGAMHDDEAALGIQRPDIEPRATQFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIE+L NG AYQ ++G DVNYSVR F NYGKLSG+ + + N+
Sbjct: 121 PQMLGMIEQLEANGYAYQASDG----DVNYSVRKFANYGKLSGKSLDDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K DP W SK+G GRPGWHIECSAM C LLG HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKAEDPEGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++N+KMSKS GNF TIR++L++Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLERYDAEVMRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD+ +D NEP+A+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDALA--LDWNEPYAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
D NTPVA++ LF+LA +N+ + +A+QL+ L LGLL FL+ + +
Sbjct: 355 DINTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQGAGSAHAGAL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
+ ++I+ +I R A++ K++ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 --AADEIEARIAARVAAKQAKDYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|A0K8K2|SYC_BURCH Cysteine--tRNA ligase OS=Burkholderia cenocepacia (strain HI2424)
GN=cysS PE=3 SV=1
Length = 465
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 267/473 (56%), Positives = 341/473 (72%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ+F P PG+V +YVCGIT YDYCH+GHAR+++VFD+VQRWLR
Sbjct: 1 MESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+IK+LT RFI A ED L IQ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIKSLTDRFIGAMHEDETALGIQRPDVEPRATQFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIE L NG AYQ +GDVNYSVR F +YGKLSG+ + + N+
Sbjct: 121 PQMLGMIETLETNGYAYQ----AADGDVNYSVRKFADYGKLSGKSLDDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K ++P W SK+G GRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KQDPLDFVLWKRAKADEPEGASWASKYGMGRPGWHIECSAMGCSLLGNHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++N+KMSKS GNF TIR++L++Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGETFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLERYDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD+ +D NEPHA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDTLA--LDWNEPHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTPVA++ LF+LA +N+ + +A+QL+ L LGLL FL+ + +
Sbjct: 355 DFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQASGAAQAGGL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ +I R A++ K++ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 AADE--IEAQIAARVAAKQAKDYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|Q1BHP1|SYC_BURCA Cysteine--tRNA ligase OS=Burkholderia cenocepacia (strain AU 1054)
GN=cysS PE=3 SV=1
Length = 465
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 267/473 (56%), Positives = 341/473 (72%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ+F P PG+V +YVCGIT YDYCH+GHAR+++VFD+VQRWLR
Sbjct: 1 MESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+IK+LT RFI A ED L IQ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIKSLTDRFIGAMHEDETALGIQRPDVEPRATQFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIE L NG AYQ +GDVNYSVR F +YGKLSG+ + + N+
Sbjct: 121 PQMLGMIETLETNGYAYQ----AADGDVNYSVRKFADYGKLSGKSLDDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K ++P W SK+G GRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KQDPLDFVLWKRAKADEPEGASWASKYGMGRPGWHIECSAMGCSLLGNHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++N+KMSKS GNF TIR++L++Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGETFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLERYDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD+ +D NEPHA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDTLA--LDWNEPHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTPVA++ LF+LA +N+ + +A+QL+ L LGLL FL+ + +
Sbjct: 355 DFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQASGAAQAGGL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ +I R A++ K++ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 AADE--IEAQIAARVAAKQAKDYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|Q39EY8|SYC2_BURS3 Cysteine--tRNA ligase 2 OS=Burkholderia sp. (strain 383) GN=cysS2
PE=3 SV=1
Length = 465
Score = 551 bits (1421), Expect = e-156, Method: Compositional matrix adjust.
Identities = 268/473 (56%), Positives = 338/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ+F P G+V +YVCGIT YDYCH+GHAR+++VFD+VQRWLR
Sbjct: 1 MESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+IK+LT RFI A +D L IQ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIKSLTDRFIGAMHDDESALGIQRPDIEPRATEFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIE L NG AYQ +GDVNYSVR F NYGKLSG+ + + N+
Sbjct: 121 PQMLGMIETLETNGYAYQ----ATDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K DP W SK+G GRPGWHIECSAM C LLG HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKPEDPEGTSWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++N+KMSKS GNF TIR++L++Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLERYDAEVMRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD+ +D NEPHA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEADTLA--LDWNEPHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTPVA++ LF+LA +N+ + +A+QL+ L LGLL FL+ + +
Sbjct: 355 DFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQASGAAQAGGL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ KI R A++ K++ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 AADE--IEAKIAARVAAKQAKDYAEADRIRAELLETGIALEDKPGGSTEWRRV 465
>sp|B4ED73|SYC_BURCJ Cysteine--tRNA ligase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=cysS PE=3 SV=1
Length = 465
Score = 551 bits (1420), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/473 (56%), Positives = 340/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ+F P G+V +YVCGIT YDYCH+GHAR+++VFD+VQRWLR
Sbjct: 1 MESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+IK+LT RFI A ED L IQ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIKSLTDRFIGAMHEDESALGIQRPDIEPRATQFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIE L NG AYQ ++G DVNYSVR F NYGKLSG+ + + N+
Sbjct: 121 PQMLGMIETLETNGYAYQASDG----DVNYSVRKFTNYGKLSGKSLDDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K DP W SK+G GRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKPEDPEGASWASKYGMGRPGWHIECSAMGCSLLGNHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++N+KMSKS GNF TIR++L++Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGETFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLERYDAEVMRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD+ +D NEPHA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVDADTLA--LDWNEPHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTPVA++ LF+LA +N+ + +A+QL+ L LGLL FL+ + +
Sbjct: 355 DFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQASGAAQAGGL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ KI R A++ K++ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 AADE--IEAKIAARVAAKQAKDYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|B1JUK8|SYC_BURCC Cysteine--tRNA ligase OS=Burkholderia cenocepacia (strain MC0-3)
GN=cysS PE=3 SV=1
Length = 465
Score = 551 bits (1420), Expect = e-156, Method: Compositional matrix adjust.
Identities = 266/473 (56%), Positives = 340/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ+F P PG+V +YVCGIT YDYCH+GHAR+++VFD+VQRWLR
Sbjct: 1 MESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+IK+LT RFI A ED L IQ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIKSLTDRFIGAMHEDETALGIQRPDVEPRATQFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIE L NG AYQ +GDVNYSVR F +YGKLSG+ + + N+
Sbjct: 121 PQMLGMIETLETNGYAYQ----AADGDVNYSVRKFADYGKLSGKSLDDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K ++P W SK+G GRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KQDPLDFVLWKRAKEDEPEGASWASKYGMGRPGWHIECSAMGCSLLGNHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++N+KMSKS GNF TIR++L++Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGETFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLERYDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD+ +D NEPH +RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDTLA--LDWNEPHGQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTPVA++ LF+LA +N+ + +A+QL+ L LGLL FL+ + +
Sbjct: 355 DFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQASGAAQAGGL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ +I R A++ K++ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 AADE--IEAQIAARVAAKQAKDYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|Q0BDV4|SYC_BURCM Cysteine--tRNA ligase OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=cysS PE=3 SV=1
Length = 465
Score = 550 bits (1418), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/473 (56%), Positives = 340/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ+F P G+V +YVCGIT YDYCH+GHAR+++VFD+VQRWLR
Sbjct: 1 MESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDI+DKII A +N E+IK+LT RFI A ED L IQ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIEDKIIRRAVENGETIKSLTDRFIGAMHEDEAALGIQRPDLEPRATQFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIEKL NG AYQ +GDVNYSVR F NYGKLSG+ + + N+
Sbjct: 121 PQMLGMIEKLETNGYAYQ----AADGDVNYSVRKFANYGKLSGKSLDDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +DP W SK+G GRPGWHIECSAM C LLG HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKADDPPGATWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++N+KMSKS GNF TIR++L++Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLERYDAEVMRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD+ +D NEPHA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDALA--LDWNEPHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
D NTPVA++ LF+LA IN+ + +A+QL+ L LGLL FL+ + +
Sbjct: 355 DINTPVAVATLFELAGEINRTRDASLARQLKQLAGLLGLLGREPRAFLQQATGAAQAGGL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ KI R A++ K++ EAD+IR EL++ GI LED P G TEWRR+
Sbjct: 415 AADE--IEAKIAARVAAKQAKDYAEADRIRAELLDAGIALEDKPGGSTEWRRV 465
>sp|B1YSM8|SYC_BURA4 Cysteine--tRNA ligase OS=Burkholderia ambifaria (strain MC40-6)
GN=cysS PE=3 SV=1
Length = 465
Score = 550 bits (1417), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/473 (56%), Positives = 339/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ+F P G+V +YVCGIT YDYCH+GHAR+++VFD+VQRWLR
Sbjct: 1 MESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+IK+LT RFI A ED L IQ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRALENGETIKSLTDRFIGAMHEDEAALGIQRPDIEPRATQFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIEKL NG AYQ +GDVNYSVR F NYGKLSG+ + + N+
Sbjct: 121 PQMLGMIEKLETNGYAYQ----AADGDVNYSVRKFANYGKLSGKSLDDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +DP W SK+G GRPGWHIECSAM C LLG HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKADDPQGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++N+KMSKS GNF TIR++L++Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLERYDAEVMRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD+ +D NEPHA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVQPDALA--LDWNEPHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
D NTPVA++ LF+LA +N+ +A+QL+ L LGLL FL+ + +
Sbjct: 355 DINTPVAVATLFELAGEVNRTCDASLARQLKQLAGLLGLLGREPRAFLQQATGAAQAGGL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ KI R A++ K++ EAD+IR EL++ GI LED P G TEWRR+
Sbjct: 415 AADE--IEAKIAARVAAKQAKDYAEADRIRAELLDAGIALEDKPGGSTEWRRV 465
>sp|Q2SX78|SYC_BURTA Cysteine--tRNA ligase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=cysS PE=3 SV=1
Length = 465
Score = 549 bits (1415), Expect = e-155, Method: Compositional matrix adjust.
Identities = 267/474 (56%), Positives = 340/474 (71%), Gaps = 11/474 (2%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ F P PG+V +YVCGIT YDYCH+GHAR+++VFDIVQRWLR
Sbjct: 1 MESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRAAG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+I++LT RFI A D L ++ PD +P AT++I
Sbjct: 61 YRVTYVRNITDIDDKIIRRALENGETIQSLTRRFIDAMNADFDALGVERPDIEPRATDFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS--NFNKINEKNN 178
PQ+L MIEKL NG AYQ +G DVNYSVR F NYGKLSG+ + ++ K+
Sbjct: 121 PQMLGMIEKLEANGYAYQAKDG----DVNYSVRKFANYGKLSGKSLEDLRAGERVAAKDA 176
Query: 179 FKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDL 238
K DPLDF LWK +K +P W SK+GAGRPGWHIECSAM C LLG HFDIHGGGQDL
Sbjct: 177 -KDDPLDFVLWKRAKPEEPAGASWESKYGAGRPGWHIECSAMGCTLLGEHFDIHGGGQDL 235
Query: 239 KFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIR 298
+FPHHENEIAQSEGA FVNYWMH+GFV+++++KMSKS GNF TIR++L+KY+ EV+R
Sbjct: 236 QFPHHENEIAQSEGATGQTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLEKYDAEVVR 295
Query: 299 FFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMN 358
FFI+R+HYRS +NYS+++L+ A+ SL RLY A+KD+ +D +E HA+RF AMN
Sbjct: 296 FFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDV--TPDAAPLDWSEAHAQRFAAAMN 353
Query: 359 DDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKN 418
DDFNT VA+++LF+LA +N+ + +A+QL+ L LGLL EFL+ R
Sbjct: 354 DDFNTAVAVAVLFELATEVNRTREPALARQLKRLAGLLGLLGREPREFLQQAAGAARTGA 413
Query: 419 VNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
+ E I+ +I R A++ KN+ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 414 LEPDE--IEARIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|A9AHN6|SYC_BURM1 Cysteine--tRNA ligase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=cysS PE=3 SV=1
Length = 465
Score = 546 bits (1407), Expect = e-154, Method: Compositional matrix adjust.
Identities = 269/473 (56%), Positives = 344/473 (72%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ+F P PG+V +YVCGIT YDYCH+GHAR+++VFD+VQRWLR
Sbjct: 1 MESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+IK+LT RFI A ED L IQ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIKSLTDRFIDAMHEDEDALGIQRPDIEPRATQFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIE+L NG AYQ +GDVNYSVR F NYGKLSG+ + + N+
Sbjct: 121 PQMLGMIERLEANGYAYQ----ATDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +DP W SK+G GRPGWHIECSAM C LLG HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKADDPEGASWESKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYW+H+GFV+++N+KMSKS GNF TIR++L++Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWLHNGFVQVDNEKMSKSLGNFFTIREVLERYDAEVMRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD+ +D NEPHA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDALA--LDWNEPHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTPVAI+ LF+LA +N+ + +A+QL+ L LGLL FL+ + +
Sbjct: 355 DFNTPVAIATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQASGAAQAGAL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
+ E I+ KI R+ A++ K++ EAD+IR EL++ G+ LED P G TEWRR+
Sbjct: 415 SVDE--IEAKIAARAAAKRAKDYAEADRIRAELLDAGVALEDKPGGSTEWRRV 465
>sp|Q63SS8|SYC_BURPS Cysteine--tRNA ligase OS=Burkholderia pseudomallei (strain K96243)
GN=cysS PE=3 SV=1
Length = 465
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/473 (56%), Positives = 340/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ F P PG+V +YVCGIT YDYCH+GHAR+++VFDIVQRWLR
Sbjct: 1 MESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRARG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+I++LT RF A D L ++ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIQSLTRRFTDAMNADFDALGVERPDLEPRATEFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIEKL NG AYQ +G DVNYSVR F NYG+LSG+ + + N+
Sbjct: 121 PQMLGMIEKLEANGYAYQAKDG----DVNYSVRKFANYGRLSGKSLEDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +P W SK+GAGRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKPQEPAGASWESKYGAGRPGWHIECSAMGCTLLGAHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++++KMSKS GNF TIR++L+K++ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLEKFDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD + +D +E HA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKD--ATPDAQPLDWSEAHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNT VA+++LF+LA +N+ + +A+QLR L LGLL EFL++ R +
Sbjct: 355 DFNTAVAVAVLFELATEVNRTREPALARQLRLLAGLLGLLGREPREFLQHAAGAARTGAL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ +I R A++ KN+ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 EPHE--IEARIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|A3NB50|SYC_BURP6 Cysteine--tRNA ligase OS=Burkholderia pseudomallei (strain 668)
GN=cysS PE=3 SV=1
Length = 465
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/473 (56%), Positives = 340/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ F P PG+V +YVCGIT YDYCH+GHAR+++VFDIVQRWLR
Sbjct: 1 MESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRARG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+I++LT RF A D L ++ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIQSLTRRFTDAMNADFDALGVERPDLEPRATEFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIEKL NG AYQ +G DVNYSVR F NYG+LSG+ + + N+
Sbjct: 121 PQMLGMIEKLEANGYAYQAKDG----DVNYSVRKFANYGRLSGKSLEDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +P W SK+GAGRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKPQEPAGASWESKYGAGRPGWHIECSAMGCTLLGAHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++++KMSKS GNF TIR++L+K++ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLEKFDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD + +D +E HA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKD--ATPDAQPLDWSEAHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNT VA+++LF+LA +N+ + +A+QLR L LGLL EFL++ R +
Sbjct: 355 DFNTAVAVAVLFELATEVNRTREPALARQLRLLAGLLGLLGREPREFLQHAAGAARTGAL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ +I R A++ KN+ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 EPHE--IEARIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|Q3JQT6|SYC_BURP1 Cysteine--tRNA ligase OS=Burkholderia pseudomallei (strain 1710b)
GN=cysS PE=3 SV=1
Length = 465
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/473 (56%), Positives = 340/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ F P PG+V +YVCGIT YDYCH+GHAR+++VFDIVQRWLR
Sbjct: 1 MESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRARG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+I++LT RF A D L ++ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIQSLTRRFTDAMNADFDALGVERPDLEPRATEFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIEKL NG AYQ +G DVNYSVR F NYG+LSG+ + + N+
Sbjct: 121 PQMLGMIEKLEANGYAYQAKDG----DVNYSVRKFANYGRLSGKSLEDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +P W SK+GAGRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKPQEPAGASWESKYGAGRPGWHIECSAMGCTLLGAHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++++KMSKS GNF TIR++L+K++ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLEKFDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD + +D +E HA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKD--ATPDAQPLDWSEAHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNT VA+++LF+LA +N+ + +A+QLR L LGLL EFL++ R +
Sbjct: 355 DFNTAVAVAVLFELATEVNRTREPALARQLRLLAGLLGLLGREPREFLQHAAGAARTGAL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ +I R A++ KN+ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 EPHE--IEARIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|A3NWX8|SYC_BURP0 Cysteine--tRNA ligase OS=Burkholderia pseudomallei (strain 1106a)
GN=cysS PE=3 SV=1
Length = 465
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/473 (56%), Positives = 340/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ F P PG+V +YVCGIT YDYCH+GHAR+++VFDIVQRWLR
Sbjct: 1 MESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRARG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+I++LT RF A D L ++ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIQSLTRRFTDAMNADFDALGVERPDLEPRATEFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIEKL NG AYQ +G DVNYSVR F NYG+LSG+ + + N+
Sbjct: 121 PQMLGMIEKLEANGYAYQAKDG----DVNYSVRKFANYGRLSGKSLEDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +P W SK+GAGRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKPQEPAGASWESKYGAGRPGWHIECSAMGCTLLGAHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++++KMSKS GNF TIR++L+K++ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLEKFDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD + +D +E HA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKD--ATPDAQPLDWSEAHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNT VA+++LF+LA +N+ + +A+QLR L LGLL EFL++ R +
Sbjct: 355 DFNTAVAVAVLFELATEVNRTREPALARQLRLLAGLLGLLGREPREFLQHAAGAARTGAL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ +I R A++ KN+ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 EPHE--IEARIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|A1V5G8|SYC_BURMS Cysteine--tRNA ligase OS=Burkholderia mallei (strain SAVP1) GN=cysS
PE=3 SV=1
Length = 465
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/473 (56%), Positives = 340/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ F P PG+V +YVCGIT YDYCH+GHAR+++VFDIVQRWLR
Sbjct: 1 MESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRARG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+I++LT RF A D L ++ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIQSLTRRFTDAMNADFDALGVERPDLEPRATEFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIEKL NG AYQ +G DVNYSVR F NYG+LSG+ + + N+
Sbjct: 121 PQMLGMIEKLEANGYAYQAKDG----DVNYSVRKFANYGRLSGKSLEDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +P W SK+GAGRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKPQEPAGASWESKYGAGRPGWHIECSAMGCTLLGAHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++++KMSKS GNF TIR++L+K++ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLEKFDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD + +D +E HA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKD--ATPDAQPLDWSEAHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNT VA+++LF+LA +N+ + +A+QLR L LGLL EFL++ R +
Sbjct: 355 DFNTAVAVAVLFELATEVNRTREPALARQLRLLAGLLGLLGREPREFLQHAAGAARTGAL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ +I R A++ KN+ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 EPHE--IEARIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|Q62J37|SYC_BURMA Cysteine--tRNA ligase OS=Burkholderia mallei (strain ATCC 23344)
GN=cysS PE=3 SV=1
Length = 465
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/473 (56%), Positives = 340/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ F P PG+V +YVCGIT YDYCH+GHAR+++VFDIVQRWLR
Sbjct: 1 MESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRARG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+I++LT RF A D L ++ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIQSLTRRFTDAMNADFDALGVERPDLEPRATEFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIEKL NG AYQ +G DVNYSVR F NYG+LSG+ + + N+
Sbjct: 121 PQMLGMIEKLEANGYAYQAKDG----DVNYSVRKFANYGRLSGKSLEDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +P W SK+GAGRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKPQEPAGASWESKYGAGRPGWHIECSAMGCTLLGAHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++++KMSKS GNF TIR++L+K++ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLEKFDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD + +D +E HA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKD--ATPDAQPLDWSEAHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNT VA+++LF+LA +N+ + +A+QLR L LGLL EFL++ R +
Sbjct: 355 DFNTAVAVAVLFELATEVNRTREPALARQLRLLAGLLGLLGREPREFLQHAAGAARTGAL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ +I R A++ KN+ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 EPHE--IEARIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|A2SAX8|SYC_BURM9 Cysteine--tRNA ligase OS=Burkholderia mallei (strain NCTC 10229)
GN=cysS PE=3 SV=1
Length = 465
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/473 (56%), Positives = 340/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ F P PG+V +YVCGIT YDYCH+GHAR+++VFDIVQRWLR
Sbjct: 1 MESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRARG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+I++LT RF A D L ++ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIQSLTRRFTDAMNADFDALGVERPDLEPRATEFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIEKL NG AYQ +G DVNYSVR F NYG+LSG+ + + N+
Sbjct: 121 PQMLGMIEKLEANGYAYQAKDG----DVNYSVRKFANYGRLSGKSLEDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +P W SK+GAGRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKPQEPAGASWESKYGAGRPGWHIECSAMGCTLLGAHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++++KMSKS GNF TIR++L+K++ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLEKFDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD + +D +E HA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKD--ATPDAQPLDWSEAHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNT VA+++LF+LA +N+ + +A+QLR L LGLL EFL++ R +
Sbjct: 355 DFNTAVAVAVLFELATEVNRTREPALARQLRLLAGLLGLLGREPREFLQHAAGAARTGAL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ +I R A++ KN+ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 EPHE--IEARIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|A3ML43|SYC_BURM7 Cysteine--tRNA ligase OS=Burkholderia mallei (strain NCTC 10247)
GN=cysS PE=3 SV=1
Length = 465
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/473 (56%), Positives = 340/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ F P PG+V +YVCGIT YDYCH+GHAR+++VFDIVQRWLR
Sbjct: 1 MESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRARG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y VTYVRNITDIDDKII A +N E+I++LT RF A D L ++ PD +P AT +I
Sbjct: 61 YRVTYVRNITDIDDKIIRRAVENGETIQSLTRRFTDAMNADFDALGVERPDLEPRATEFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIEKL NG AYQ +G DVNYSVR F NYG+LSG+ + + N+
Sbjct: 121 PQMLGMIEKLEANGYAYQAKDG----DVNYSVRKFANYGRLSGKSLEDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +P W SK+GAGRPGWHIECSAM C LLG+HFDIHGGGQDL+
Sbjct: 177 KEDPLDFVLWKRAKPQEPAGASWESKYGAGRPGWHIECSAMGCTLLGAHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA FVNYWMH+GFV+++++KMSKS GNF TIR++L+K++ EV+RF
Sbjct: 237 FPHHENEIAQSEGATGQTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLEKFDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +NYS+++L+ A+ SL RLY A+KD + +D +E HA+RF AMND
Sbjct: 297 FIVRTHYRSPLNYSDVHLDDARASLTRLYTALKD--ATPDAQPLDWSEAHAQRFAAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNT VA+++LF+LA +N+ + +A+QLR L LGLL EFL++ R +
Sbjct: 355 DFNTAVAVAVLFELATEVNRTREPALARQLRLLAGLLGLLGREPREFLQHAAGAARTGAL 414
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
E I+ +I R A++ KN+ EAD+IR EL+ GI LED P G TEWRR+
Sbjct: 415 EPHE--IEARIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGSTEWRRV 465
>sp|Q13X60|SYC_BURXL Cysteine--tRNA ligase OS=Burkholderia xenovorans (strain LB400)
GN=cysS PE=3 SV=1
Length = 465
Score = 531 bits (1367), Expect = e-150, Method: Compositional matrix adjust.
Identities = 260/473 (54%), Positives = 339/473 (71%), Gaps = 9/473 (1%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
M +LRIYN+ +R KQ F P+ G V +YVCG+T YDYCH+GHAR+M+VFDIVQRWLR
Sbjct: 1 MESLRIYNTLARDKQTFVPLQDGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTLG 60
Query: 61 YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
Y+VTYVRNITDIDDKII A +N E+IK+LT RFIKA ED+ L IQ PD +P AT++I
Sbjct: 61 YNVTYVRNITDIDDKIIRRAVENGETIKSLTDRFIKALHEDADALGIQRPDIEPRATDFI 120
Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
PQ+L MIE+L NG AYQ ++G DVNY+VR F NYGKLSG+ + + N+
Sbjct: 121 PQMLGMIERLEANGYAYQASDG----DVNYAVRKFANYGKLSGKSLEDLRAGERVAANDA 176
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLDF LWK +K +P + W+SK+G GRPGWHIECSAM C LLG HFDIHGGGQDL+
Sbjct: 177 KQDPLDFVLWKQAKPQEPADTGWDSKYGRGRPGWHIECSAMGCTLLGEHFDIHGGGQDLQ 236
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSE A FVN+WMH+G+V+I+N+KMSKS NF TIR++L +Y+ EV+RF
Sbjct: 237 FPHHENEIAQSEAATGQTFVNFWMHNGYVQIDNEKMSKSLNNFFTIREVLAQYDAEVVRF 296
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI R+HYRS +NYS+++++ A+ +L RLY A+KD+ + +D NE +A+RF AMND
Sbjct: 297 FIARAHYRSPLNYSDVHIDDARNALTRLYTALKDVTPDGAE--LDWNEAYAQRFQAAMND 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DFNTPVA+S+LF+LA+ +N+ + +A+QLR LG +GLL +
Sbjct: 355 DFNTPVAVSVLFELASEVNRTRDPALARQLRLLGAVIGLL--GREPRAYLQQAAGAAAVG 412
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
I+ KI R+ A++ K+F AD+IR EL+ G+ LED P G TEWRR+
Sbjct: 413 ALEAAAIEAKIAARAAAKQAKDFAAADRIRSELLEAGVALEDKPGGLTEWRRV 465
>sp|A4SX62|SYC_POLSQ Cysteine--tRNA ligase OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=cysS PE=3 SV=1
Length = 473
Score = 521 bits (1341), Expect = e-147, Method: Compositional matrix adjust.
Identities = 257/480 (53%), Positives = 326/480 (67%), Gaps = 21/480 (4%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L+IYN+ SR KQ+F PI PGKV +YVCG+T YD+CH+GHAR+MIVFD+V RWLR + Y+V
Sbjct: 2 LQIYNTLSRSKQVFKPIVPGKVKMYVCGMTVYDFCHIGHARVMIVFDMVVRWLRASGYEV 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
YVRNITDIDDKII A +N+E I LT+RFI A DS L + PD +P AT+YI Q+
Sbjct: 62 QYVRNITDIDDKIIKRALENSEPISALTNRFIAAMHADSDELGLMHPDQEPRATDYIQQM 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD 182
MI KLI N LAYQ +GDVN++VR YG+LSG+ + N + K+D
Sbjct: 122 QGMIGKLIENELAYQGE----DGDVNFAVRLLPRYGQLSGKTLDELNAGERVAIGGGKRD 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
PLDF LWK +K +P + RWNS WG GRPGWHIECSAMSC LLG+HFDIHGGG DL+FPH
Sbjct: 178 PLDFVLWKSAKPEEPADTRWNSPWGEGRPGWHIECSAMSCDLLGAHFDIHGGGADLQFPH 237
Query: 243 HENEIAQSEGAY--------KHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNP 294
HENEIAQSEGA FVNYWMH+G +++N +KMSKS GNF IRD+LK ++P
Sbjct: 238 HENEIAQSEGALYGQNRQENDAPFVNYWMHNGHIRVNEEKMSKSLGNFFLIRDVLKSFDP 297
Query: 295 EVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFI 354
EV+RFF+L++HYRS INYS+ L A+ L RLY A+ IP+++ IDL P AKRF
Sbjct: 298 EVVRFFMLKAHYRSPINYSDAQLEEARSGLTRLYTALTHIPEVDTVP-IDLQNPWAKRFA 356
Query: 355 IAMNDDFNTPVAISILFDLANIINKNKSIK---MAKQLRGLGNWLGLLEYSSDEFLKNNI 411
AMNDDFNTP AI++LFDLA+ +N+ + + +A L+ LG L L+ FL+
Sbjct: 357 DAMNDDFNTPEAIAVLFDLASEVNRAQGAEKQMLAGLLKSLGGTLNFLQRDPTNFLQAG- 415
Query: 412 YTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
K S I+ I R A++ K+F +AD IR+ L+ G++LED P G TEWRR
Sbjct: 416 ---SKDQSGLSSEQIEEHIAARVAAKQAKDFAKADGIRKALLEQGVVLEDKPGGITEWRR 472
>sp|Q1H417|SYC_METFK Cysteine--tRNA ligase OS=Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875) GN=cysS PE=3 SV=1
Length = 455
Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/471 (54%), Positives = 329/471 (69%), Gaps = 21/471 (4%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L+IYN+ +R KQ F PI PGKVS+YVCG+T YDYCHLGHAR+M+VFD+V RWLR + Y+V
Sbjct: 2 LKIYNTLARAKQTFSPIIPGKVSMYVCGMTVYDYCHLGHARVMVVFDMVNRWLRSSGYEV 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
TYVRNITDIDDKIIA A +N E+I LT RFI A ED+ L + PD +P AT+YI ++
Sbjct: 62 TYVRNITDIDDKIIARANENGETINALTDRFIAAMNEDAARLGVWRPDLEPRATDYIHEM 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD 182
+ MI LI AY +NG DV Y+V +F +YGKLSG+ + + E + K+D
Sbjct: 122 IAMIVALIEKHHAYAADNG----DVYYAVSSFASYGKLSGKSLEDLRAGERVEVDAHKRD 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
P+DF LWK +K P E W+S WG GRPGWHIECSAM LG HFDIHGGGQDL+FPH
Sbjct: 178 PMDFVLWKAAK---PGEPSWDSPWGPGRPGWHIECSAMGARHLGPHFDIHGGGQDLQFPH 234
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQSEGA+ FVNYWMH+GF++++++KMSKS GNF TIR++L+KY+ EV+RFFIL
Sbjct: 235 HENEIAQSEGAHGCTFVNYWMHNGFIRVDDEKMSKSLGNFFTIREVLEKYDAEVVRFFIL 294
Query: 303 RSHYRSTINYSEIYLNYAKKSLIRLY--LAIKDIPKINYKKIIDLNEPHAKRFIIAMNDD 360
R+HYRS +NYS +L+ AK++L RLY L +++P+++ ID +P A+RF A++DD
Sbjct: 295 RAHYRSPLNYSSHHLDDAKQALTRLYNTLRGRELPQLD----IDWRQPEAERFKQALDDD 350
Query: 361 FNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVN 420
FNTP A ++LF+LA+ N+ S A L+ L LGLL+ DEFLK
Sbjct: 351 FNTPEAFAVLFELASEANRTGSAVQAALLKALAGQLGLLQRDPDEFLKGEAV------AG 404
Query: 421 YSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
S ++I+ I R ARK KNF EAD+IR L GIILED P G T WRR
Sbjct: 405 LSPDEIERLIAERLAARKCKNFAEADRIRDALTAQGIILEDTPQG-TSWRR 454
>sp|Q5P1H8|SYC_AROAE Cysteine--tRNA ligase OS=Aromatoleum aromaticum (strain EbN1)
GN=cysS PE=3 SV=1
Length = 461
Score = 515 bits (1326), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/469 (53%), Positives = 339/469 (72%), Gaps = 11/469 (2%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L I+N+ +R+K+ F PI PGKV +YVCG+T YDYCHLGHAR+M+VFD+V RWLR + +++
Sbjct: 2 LHIHNTLTRRKEAFVPIAPGKVRMYVCGMTVYDYCHLGHARVMVVFDMVARWLRASGFEL 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
TYVRNITDIDDKII A + ESI+TLT RFI A ED+ L + PD++P AT Y+ Q+
Sbjct: 62 TYVRNITDIDDKIIRRAGEKGESIRTLTDRFIAAMHEDADALGVLRPDHEPRATEYVMQM 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD 182
+I +L GLAY N DV YSVR F +YG+ SG+ + + E K+D
Sbjct: 122 QSLIGRLRDKGLAYVAGNR----DVCYSVRKFDSYGRFSGKSLDELRAGERVEVAGDKQD 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
PLDF LWK ++ ++P E++W S WGAGRPGWHIECSAMS LLG FDIHGGGQDL+FPH
Sbjct: 178 PLDFVLWKHARTDEPDEVKWASPWGAGRPGWHIECSAMSSDLLGEQFDIHGGGQDLQFPH 237
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQSEGA+ H FVNYWMH+GFV+++++KMSKS GNF TIRD+L++++PEV+RFFIL
Sbjct: 238 HENEIAQSEGAHGHTFVNYWMHNGFVRVDDEKMSKSLGNFFTIRDVLERFDPEVVRFFIL 297
Query: 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFN 362
R+HYRS +NYS+ +L A+++L RLY A++++ + + +D +EPHA RF AM+DDFN
Sbjct: 298 RAHYRSPLNYSDAHLEDARQALTRLYTALRNVQPSDAQ--VDWDEPHAMRFRAAMDDDFN 355
Query: 363 TPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYS 422
T A+++LF+LAN N++ S A QL+GLG LGLL FL+ + E K +
Sbjct: 356 TAEAVAVLFELANEANRSGSAATAAQLKGLGGVLGLLAREPASFLQGRMAGEPDKGEGVA 415
Query: 423 ENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
I+ I R+ A+K K++ EAD+IR +L+ +GI+LED P+G T WRR
Sbjct: 416 ---IESMIERRALAKKSKDYAEADRIRAQLLASGIVLEDTPHG-TVWRR 460
>sp|Q2Y7U5|SYC_NITMU Cysteine--tRNA ligase OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=cysS PE=3 SV=1
Length = 464
Score = 515 bits (1326), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/471 (52%), Positives = 339/471 (71%), Gaps = 18/471 (3%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L+I+NS +R+KQ F P+TPGKV +YVCG+T YDYCHLGHAR+M+VFD+VQRW R N +DV
Sbjct: 2 LKIHNSLAREKQEFIPLTPGKVKVYVCGMTVYDYCHLGHARVMVVFDMVQRWFRANRFDV 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
TYVRNITDIDDKII A++N ESI+ LT+RFI+A +ED+ L ++PP ++P AT ++ +
Sbjct: 62 TYVRNITDIDDKIIRRAQENKESIEALTARFIQAMEEDAAALGVEPPSWEPRATRHVEDM 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEK---NNFK 180
+ MI+ L+ LAY +NG DV Y+V F YGKLSG+ S + + E+ + K
Sbjct: 122 IAMIQVLVDKKLAYPASNG----DVYYAVHRFPGYGKLSGK--SLDELRAGERVIVDPHK 175
Query: 181 KDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKF 240
DPLDF LWK +K +P +W+S WG GRPGWHIECSAM + LG HFDIHGGGQDL+F
Sbjct: 176 NDPLDFVLWKAAKPGEP---QWDSPWGPGRPGWHIECSAMGEHYLGEHFDIHGGGQDLQF 232
Query: 241 PHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFF 300
PHHENEIAQSEGA+ H FVNYWMH+GFV++N++KMSKS GNF T+R++L + PEV+RFF
Sbjct: 233 PHHENEIAQSEGAHGHPFVNYWMHNGFVRVNDEKMSKSLGNFFTVREILAHFQPEVVRFF 292
Query: 301 ILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDD 360
ILR+HYRS +NY+++ L A ++L RLY A+K I +++ + ID ++P+A RF AMNDD
Sbjct: 293 ILRAHYRSPLNYADMQLEDAGRALDRLYTALKGI-EVHDEVEIDWDDPYASRFREAMNDD 351
Query: 361 FNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVN 420
FNTP A+++LFDLA +NK + + ++ LG LGLL+ ++ + ++
Sbjct: 352 FNTPEALAVLFDLATEVNKTRLPRDIALMKALGGVLGLLQQDPWKYFQQ----ADSEDPA 407
Query: 421 YSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
++ ++ I R AR K++ EAD+IR+EL+ IILED P+G T WRR
Sbjct: 408 FAPEKVEQLIQQRLVARANKDYREADRIRKELMEANIILEDGPHGTT-WRR 457
>sp|Q129L2|SYC_POLSJ Cysteine--tRNA ligase OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=cysS PE=3 SV=1
Length = 462
Score = 507 bits (1305), Expect = e-143, Method: Compositional matrix adjust.
Identities = 236/467 (50%), Positives = 323/467 (69%), Gaps = 13/467 (2%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
+LRIYN+ SR ++F P+ PG V +YVCG+T YD CHLGHAR M+ FD+VQRWL+++
Sbjct: 2 SLRIYNTLSRDVEVFSPLLPGHVRMYVCGMTVYDLCHLGHARAMVAFDVVQRWLKVSGLK 61
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
VTYVRN+TDIDDKII A +N E+I++LT R + A +D+ L I+ P ++P AT+++PQ
Sbjct: 62 VTYVRNVTDIDDKIIKRAVENGETIRSLTDRMVVALHQDADALGIERPTHEPRATDFVPQ 121
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKK 181
+L +I L GLAYQ +G GDVNY+VR F YGKLSG+ + + E + K
Sbjct: 122 MLSLIGTLEKKGLAYQTQSGSGQGDVNYAVRKFDGYGKLSGKSLDELRAGERVEVLDGKD 181
Query: 182 DPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241
DPLDF LWK +K ++P + +W+S +G GRPGWHIECSAM+C LLG FDIHGGG DL+FP
Sbjct: 182 DPLDFVLWKSAKPSEPDDAKWDSPYGPGRPGWHIECSAMACELLGESFDIHGGGADLQFP 241
Query: 242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
HHENEIAQSEGA+ WMH+GFV+++N+KMSKS GNF TIR++L KY+ E +RFFI
Sbjct: 242 HHENEIAQSEGAFGKPLAGTWMHNGFVRVDNEKMSKSLGNFFTIREILAKYDAETVRFFI 301
Query: 302 LRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDI-PKINYKKIIDLNEPHAKRFIIAMNDD 360
+R+HYRS +NYS+ +L+ A+ SL RLY A+ + P + ID P A RF AM++D
Sbjct: 302 IRAHYRSPLNYSDAHLDDARNSLKRLYTALDLVSPAV---VAIDWTNPFAARFKAAMDED 358
Query: 361 FNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVN 420
F TP A+++LFDLA +NK +S ++A L+ LG LGLL+ + +L +
Sbjct: 359 FGTPEAVAVLFDLAGEVNKTRSAELAGLLKSLGGCLGLLQSAPGSYL--------QAGAG 410
Query: 421 YSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKT 467
+ I+ I R++A+K KNF EAD+IR +L+ GI+L+D P G T
Sbjct: 411 LDDASIQRLIAQRADAKKTKNFAEADRIRNDLLGQGIVLKDSPAGTT 457
>sp|B1XUY8|SYC_POLNS Cysteine--tRNA ligase OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=cysS PE=3 SV=1
Length = 473
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/480 (52%), Positives = 323/480 (67%), Gaps = 21/480 (4%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L+IYN+ SR KQ+F PI PGKV +YVCG+T YD+CH+GHAR+MIVFD+V RWLR + Y+V
Sbjct: 2 LQIYNTLSRSKQVFKPIVPGKVKMYVCGMTVYDFCHIGHARVMIVFDMVVRWLRASGYEV 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
YVRNITDIDDKII A +N E I LT+RF+ A DS L + PD +P AT+YI Q+
Sbjct: 62 LYVRNITDIDDKIINRAIENGEPISALTNRFVDAMHADSDELGLMHPDQEPRATDYIAQM 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD 182
MI KLI N LAYQ N +GDVN++VR YG+LSG+ + N + + K+D
Sbjct: 122 QGMIGKLIENELAYQAN----DGDVNFAVRLLPRYGQLSGKTLDELNAGERVAVGDGKRD 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
PLDF LWK +K +P + RW S WG GRPGWHIECSAMSC LLG HFDIHGGG DL+FPH
Sbjct: 178 PLDFVLWKSAKPEEPADTRWKSPWGEGRPGWHIECSAMSCDLLGEHFDIHGGGADLQFPH 237
Query: 243 HENEIAQSEGAYKHK--------FVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNP 294
HENEIAQSEGA K FVNYWMH+G +++N +KMSKS GNF IRD+LK ++P
Sbjct: 238 HENEIAQSEGALYGKDRKVDDAPFVNYWMHNGHIRVNEEKMSKSLGNFFLIRDVLKSFDP 297
Query: 295 EVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFI 354
EVIRFF+L++HYRS INYS+ L A+ L+RLY A+ K + N P AKRF
Sbjct: 298 EVIRFFMLKTHYRSPINYSDAQLEEARSGLVRLYTALAQGSKAQTISLGSSN-PWAKRFA 356
Query: 355 IAMNDDFNTPVAISILFDLANIINKNKSIK---MAKQLRGLGNWLGLLEYSSDEFLKNNI 411
AMNDDFNTP AI++LFD+ + +N+ + + +A L+ LG L L+ FL+++
Sbjct: 357 DAMNDDFNTPEAIAVLFDIVSEVNRAQGEEKQVLANILKALGASLNFLQRDPTVFLQSSA 416
Query: 412 YTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
K S I+ +I R A++ K+F +AD IR+ L+ GI+LED P G T WRR
Sbjct: 417 ----KDQAGLSPEQIEEQIAARVAAKQAKDFAKADAIRKALLEQGIVLEDKPGGLTGWRR 472
>sp|Q0AJJ4|SYC_NITEC Cysteine--tRNA ligase OS=Nitrosomonas eutropha (strain C91) GN=cysS
PE=3 SV=1
Length = 467
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/476 (52%), Positives = 335/476 (70%), Gaps = 19/476 (3%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L+IY++ +R ++ F P+TPGKV +YVCG+T YD+CHLGHAR+++VFD V RWL+ +Y+V
Sbjct: 2 LKIYDTLTRSRREFIPLTPGKVKMYVCGMTVYDHCHLGHARVLVVFDSVVRWLQTLDYEV 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
TYVRNITDIDDKII A +N+E LT+R+I+A +ED+ L I P ++P AT I +
Sbjct: 62 TYVRNITDIDDKIIRRALENHEPFGALTARYIQAMEEDAAALGIISPSFEPRATECIESM 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD 182
+ MIE L+ GLAY NNG DV Y VR F YGKLSG+ + + E + K+D
Sbjct: 122 VTMIESLLSKGLAYVANNG----DVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDTNKRD 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
PLDF LWK +K ++P W+S WG GRPGWHIECSAMS + LG FDIHGGGQDL+FPH
Sbjct: 178 PLDFVLWKAAKPDEP---SWDSPWGKGRPGWHIECSAMSGHYLGERFDIHGGGQDLQFPH 234
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQSEG + H VNYWMH+GFV+++N+KMSKS GNF T+R++L +Y PEV+RFFI+
Sbjct: 235 HENEIAQSEGVHGHPHVNYWMHNGFVRVDNEKMSKSLGNFFTVREVLARYQPEVVRFFIV 294
Query: 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIKD------IPKINYKKIID-LNEPHAKRFII 355
R+HYRS +NYS+ +LN A+ +L RLY A+K+ ID +N+ +A+RF+
Sbjct: 295 RAHYRSPLNYSDAHLNDARNALERLYTALKNHAPSQAQAAEEATATIDWVNDGYAQRFMA 354
Query: 356 AMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTER 415
AMNDDFNTP A+++LFDLA+ N+ + A L+ LG LGLL+ S ++L++ + +
Sbjct: 355 AMNDDFNTPEAVAVLFDLASEANRTGNSHYASLLKALGGILGLLQQSPRQYLQHPAHPQ- 413
Query: 416 KKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
N ++S +I+ I R +ARK KNF +AD +RQ+L GIILED P G T WRR
Sbjct: 414 --NDHHSIEEIERMIQQRLQARKEKNFAQADALRQQLAEAGIILEDGPQGTT-WRR 466
>sp|Q47HK6|SYC_DECAR Cysteine--tRNA ligase OS=Dechloromonas aromatica (strain RCB)
GN=cysS PE=3 SV=1
Length = 456
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/469 (54%), Positives = 331/469 (70%), Gaps = 16/469 (3%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L+IYNS R+KQ+F PI P KV +YVCG+T YDYCHLGHAR+M+VFD+V RWL+ + YDV
Sbjct: 2 LKIYNSLKREKQVFTPIEPNKVRMYVCGMTVYDYCHLGHARVMVVFDMVYRWLKASGYDV 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
TYVRNITDIDDKII A +N E+I+ LT+RFI ED+ L +Q PDY+P AT Y+P++
Sbjct: 62 TYVRNITDIDDKIIKRAIENGETIQQLTNRFIAFMHEDADALGVQRPDYEPRATEYVPEM 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD 182
L +I KL NGLAYQ ++G DVNY+VR F YGKLSG+ + + E ++ K+D
Sbjct: 122 LDLIGKLEANGLAYQASDG----DVNYAVRKFPGYGKLSGKSLDDLRAGERVEVDSAKQD 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
PLDF LWK +K P E W S WG GRPGWHIECSAMS LLG HFDIHGGGQDL+FPH
Sbjct: 178 PLDFVLWKHAK---PGEPAWQSPWGDGRPGWHIECSAMSSKLLGQHFDIHGGGQDLQFPH 234
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQSEGA FVNYWMH+GFV+++N+KMSKS GNF TIR +L++++ EV+RFFIL
Sbjct: 235 HENEIAQSEGANCCNFVNYWMHNGFVRVDNEKMSKSLGNFFTIRTVLEQFDAEVVRFFIL 294
Query: 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFN 362
R+HYRS +NYS+ +L+ A++SL LY A++D+P ID + A RF A+N+DF+
Sbjct: 295 RAHYRSPLNYSDAHLDDARRSLDSLYFALRDVPPAAAD--IDWSNEFAGRFAAALNEDFD 352
Query: 363 TPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYS 422
+ AI++LF+LA +N+ KS ++ L+GLG +GLLE +L+
Sbjct: 353 SHGAIAVLFELAAEVNRQKSAGLSCLLKGLGGVIGLLEREPSAYLQGGAGVG-----GLD 407
Query: 423 ENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
E + I R+ A+K KNF EAD+IR EL GIIL+D P G T WRR
Sbjct: 408 EAAVGQMIVDRAAAKKAKNFAEADRIRDELKAAGIILDDSPQGTT-WRR 455
>sp|C1D7F5|SYC_LARHH Cysteine--tRNA ligase OS=Laribacter hongkongensis (strain HLHK9)
GN=cysS PE=3 SV=1
Length = 457
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/470 (52%), Positives = 331/470 (70%), Gaps = 17/470 (3%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L +YN+ SR+K+ F PI PGKV++YVCG+T YDYCHLGHAR+M+VFD+V RWLR + YD+
Sbjct: 2 LHLYNTLSRQKERFQPIQPGKVNMYVCGMTVYDYCHLGHARVMVVFDMVARWLRASGYDL 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
TYVRNITDIDDKII A +N E I LT RFI A ED+ L +Q P+++P AT ++P +
Sbjct: 62 TYVRNITDIDDKIIRRAAENGEPINVLTQRFIDAMDEDAAALGVQKPNFEPRATQFVPDM 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS--NFNKINEKNNFKK 181
+ MIE+LI G AY NGDV Y+VR F YG+LSG+ + +++ N K+
Sbjct: 122 ISMIEELIGKGRAY----AAPNGDVYYAVREFAGYGQLSGKSLDDLRAGERVDVDPN-KR 176
Query: 182 DPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241
DP+DF LWK +K P E W S WG GRPGWHIECSAM+ + G HFDIHGGG DL+FP
Sbjct: 177 DPMDFVLWKAAK---PGEPAWPSPWGQGRPGWHIECSAMNEHYFGPHFDIHGGGADLQFP 233
Query: 242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
HHENEIAQSEGA+ KFVNYWMH+GF++++N+KMSKS GNF TIR++L+KY+ EV+RFFI
Sbjct: 234 HHENEIAQSEGAHDCKFVNYWMHNGFIRVDNEKMSKSLGNFFTIREVLEKYDAEVVRFFI 293
Query: 302 LRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDF 361
LR+HYRS +NYS+ +L A+ +L RLY A+K++P + + N+ +A+RF AM+DDF
Sbjct: 294 LRAHYRSPLNYSDAHLEDARSALSRLYTALKNVPAADVALDWEAND-YARRFRAAMDDDF 352
Query: 362 NTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNY 421
NT A+++LF+LA NK++S ++A L+ LG LGLL+ +FL+
Sbjct: 353 NTVEAVAVLFELAGEANKSRSAELAGWLKTLGGVLGLLQRDPVDFLQGG-----SLEGEI 407
Query: 422 SENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
S ++++ I R AR K++ E+D+IR EL+ GI+LED G T WRR
Sbjct: 408 SADEVEQLIAARKAARAGKDWAESDRIRDELIARGIVLEDGAGGTT-WRR 456
>sp|Q3SHN1|SYC_THIDA Cysteine--tRNA ligase OS=Thiobacillus denitrificans (strain ATCC
25259) GN=cysS PE=3 SV=1
Length = 454
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/469 (52%), Positives = 319/469 (68%), Gaps = 18/469 (3%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L I NS +R K+ F P++PG+V +YVCG+T YD CHLGHAR+ +VFD+V RWLR + Y V
Sbjct: 2 LHITNSLTRTKEEFVPLSPGRVRMYVCGMTVYDLCHLGHARVFVVFDMVTRWLRASGYAV 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
YVRNITDIDDKII A +N E+ LT RFI ED L + PPD++P AT Y+ Q+
Sbjct: 62 EYVRNITDIDDKIIKRAHENKETPAALTERFIAEMHEDERALGVLPPDHEPRATAYVAQM 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD 182
L +I +L+ GLAY N DV YSVR F YG+LSG+ + + E + K+D
Sbjct: 122 LALIAQLVDRGLAY----AAPNADVYYSVRGFPAYGRLSGKSLDELRAGERVEVDPNKRD 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
P+DF LWK +K P E W S WG GRPGWHIECSAMS LLG HFDIHGGGQDL+FPH
Sbjct: 178 PMDFVLWKAAK---PGEPAWESPWGQGRPGWHIECSAMSAELLGQHFDIHGGGQDLQFPH 234
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQSEGA+ FVNYW+H+GFV+++N+KMSKS GNF TIR++L+KY+ E++RFFIL
Sbjct: 235 HENEIAQSEGAHGCTFVNYWLHNGFVRVDNEKMSKSLGNFFTIREVLQKYDAEIVRFFIL 294
Query: 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFN 362
R+HYRS +NYS+ +L+ A+ +L RLY A+K P +D + P A RF AM+DDFN
Sbjct: 295 RAHYRSPLNYSDAHLDDARGALTRLYTALKGAPAAG---PVDWDAPAAARFRGAMDDDFN 351
Query: 363 TPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYS 422
TP AI++LF+LA N+ + A+ LR LG +GLL+ + +FL+
Sbjct: 352 TPEAIAVLFELAAEANRGDT-GAAQTLRNLGAVIGLLQRDASDFLQAGT-----SEAGLD 405
Query: 423 ENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
++I+ +I R ARK ++F E+D+IR EL GI+LED P G T WRR
Sbjct: 406 ASEIEARIAARQAARKARDFAESDRIRDELAAAGIVLEDGPGGTT-WRR 453
>sp|Q60BG8|SYC_METCA Cysteine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=cysS PE=3 SV=1
Length = 465
Score = 494 bits (1273), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/476 (53%), Positives = 322/476 (67%), Gaps = 21/476 (4%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L+IYNS +R+K+ F P+ P +V +YVCG+T YDYCHLGHAR+M+VFD+V R+LR V
Sbjct: 2 LKIYNSLTRQKEEFRPLEPRRVRMYVCGMTVYDYCHLGHARVMVVFDMVARYLRHLGLKV 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
TYVRN+TDIDDKII A +N E+I LT+RFI+A ED L + PPD++P AT I I
Sbjct: 62 TYVRNVTDIDDKIIRRAVENGETIGALTARFIEAMHEDERALGVLPPDHEPRATESIDDI 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR-LISSNFNKINEKNNFKKD 182
L MI LI G AY +NG DV Y+V +F NYG+LSG+ L + E + K+D
Sbjct: 122 LAMIGTLIERGHAYVGSNG----DVFYAVASFPNYGRLSGKNLDELRAGERIEVDEAKRD 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
PLDF LWK +K +P+ W S WG GRPGWHIECSAMS LG+HFDIHGGG DL+FPH
Sbjct: 178 PLDFVLWKSAKPGEPF---WASPWGPGRPGWHIECSAMSTRCLGAHFDIHGGGMDLQFPH 234
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQSEGA FVNYWMH+GFV+IN +KMSKS GNF T+R++L +Y PEV+RFFIL
Sbjct: 235 HENEIAQSEGATGEHFVNYWMHNGFVRINEEKMSKSLGNFFTVREILARYRPEVVRFFIL 294
Query: 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIKDI-PKINYKKIIDLNEPHAKRFIIAMNDDF 361
SHYRS +NYS+ L+ A +L RLY A++ + P + D +E + RF AM DDF
Sbjct: 295 NSHYRSPLNYSDENLDEAAAALSRLYTALRGLAPDLPLPLGEDRDEGFSSRFADAMQDDF 354
Query: 362 NTPVAISILFDLANIINKN------KSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTER 415
NTP AI++LFDLA IN++ K+ + L+ LGN LGLL+ + + K++
Sbjct: 355 NTPEAIAVLFDLAREINRHKAAEPAKAAALGATLKSLGNVLGLLQTDPEAYFKSD----- 409
Query: 416 KKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
S+ DI+ +I R EARK KN+ E+D+IR EL GIILED G T WRR
Sbjct: 410 AGGSGLSDADIETRIRARLEARKAKNWAESDRIRDELKAQGIILEDSAAGTT-WRR 464
>sp|Q31H54|SYC_THICR Cysteine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2)
GN=cysS PE=3 SV=1
Length = 456
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 252/475 (53%), Positives = 321/475 (67%), Gaps = 25/475 (5%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
L+IYN+ +R+K+ F PI P KV LYVCG+T YDYCH+GHAR+M+VFD V R LR YD
Sbjct: 2 ALKIYNTETRQKETFTPIQPNKVGLYVCGVTVYDYCHVGHARVMVVFDTVVRHLRSLGYD 61
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
VTYVRNITDIDDKII A +N ESI++LTSRFI A ED L++ PD +P AT Y+ +
Sbjct: 62 VTYVRNITDIDDKIIQRALENKESIQSLTSRFIDAMHEDEKALNVLRPDMEPKATEYMDE 121
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKK 181
I MI LI AY NG DV + V+ +YG+LSG+ I + E N+ KK
Sbjct: 122 IETMISTLIEKDFAYPAENG----DVYFHVKADDDYGRLSGKNIEELDSGSRVEINSVKK 177
Query: 182 DPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241
DPLDF LWK SK N+P W S WG GRPGWHIECSAMS LG+HFDIHGGG DL FP
Sbjct: 178 DPLDFVLWKASKENEP---AWQSPWGDGRPGWHIECSAMSTKCLGNHFDIHGGGLDLSFP 234
Query: 242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
HHENEIAQSE A +VN WMH GFV+I+++KMSKS GNF TIR++LK+Y+PEVIR+F+
Sbjct: 235 HHENEIAQSECATGEHYVNSWMHCGFVRIDDEKMSKSLGNFFTIREVLKQYHPEVIRYFL 294
Query: 302 LRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKR----FIIAM 357
L SHYRS +NYSE L+ AK S+ RLY A++ +P D EP + F+ AM
Sbjct: 295 LASHYRSPVNYSEENLDVAKASVGRLYSALELVPA-------DQAEPAESKLEAEFMAAM 347
Query: 358 NDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKK 417
NDDFNTP A+++LF+LA +NK KS +A L+ L N +GLLE +++ F K+ +
Sbjct: 348 NDDFNTPQAMAVLFELAKEVNKQKSPGLAALLKKLANQIGLLEQTAESFFKS-----QPS 402
Query: 418 NVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
+ + ++ I+ I R+EARK K+F +D+IR EL+ GI L D G T WR+I
Sbjct: 403 DSDLTDEMIEALIVERAEARKAKDFSRSDEIRDELLAQGIELLDSAEG-TSWRKI 456
>sp|A1W6E1|SYC_ACISJ Cysteine--tRNA ligase OS=Acidovorax sp. (strain JS42) GN=cysS PE=3
SV=1
Length = 458
Score = 489 bits (1258), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/466 (51%), Positives = 315/466 (67%), Gaps = 15/466 (3%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
+LRIYN+ SR + F P+ PG V +YVCG+T YD CHLGHAR MI FD+VQRWLR +
Sbjct: 2 SLRIYNTLSRALEEFSPLEPGHVRMYVCGMTVYDLCHLGHARSMIAFDVVQRWLRASGLA 61
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
VTYVRNITDIDDKII A +N E+I++LT R I A +D+ L I+ P ++P AT Y+PQ
Sbjct: 62 VTYVRNITDIDDKIIKRAVENGETIRSLTDRMIDALHQDADALGIERPTHEPRATAYVPQ 121
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKK 181
+L MI L GLAYQ NG DVNY+VR F YGKLSG+ + N + + K
Sbjct: 122 MLDMIGTLQGKGLAYQAGNG----DVNYAVRKFPGYGKLSGKSLDELNAGERVAVQDGKH 177
Query: 182 DPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241
DPLDF LWK +K +P +++W S +G GRPGWHIECSAM C LLG FDIHGGG DL+FP
Sbjct: 178 DPLDFVLWKSAKPEEPADVKWRSPFGEGRPGWHIECSAMGCALLGESFDIHGGGADLQFP 237
Query: 242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
HHENEIAQSEGA F WMH+GF+ ++N+KMSKS GNF TIRD+LK+Y+ E +RFF+
Sbjct: 238 HHENEIAQSEGATGKPFARLWMHNGFINVDNEKMSKSLGNFFTIRDVLKEYDAETVRFFV 297
Query: 302 LRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDF 361
+RSHYRS +NYS ++L+ A+ +L RLY A+ + + +D E +A RF AM++DF
Sbjct: 298 VRSHYRSPLNYSNVHLDDARAALKRLYTALSLVAPAPVE--VDWAEGYAARFKAAMDEDF 355
Query: 362 NTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNY 421
TP A+++LFDLA +N++KS A L+ LG LGLL+ +FL K
Sbjct: 356 GTPEAVAVLFDLAGEVNRSKSPAAAGLLKALGGHLGLLQADPQDFL--------KAGAGL 407
Query: 422 SENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKT 467
E I+ +I R+ A+ KNF EAD+IR +L+ GI+L+D +G T
Sbjct: 408 DEAAIQAQIAARATAKAAKNFAEADRIRNDLLAQGIVLKDSASGTT 453
>sp|Q82Y45|SYC_NITEU Cysteine--tRNA ligase OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=cysS PE=3 SV=1
Length = 465
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/474 (51%), Positives = 330/474 (69%), Gaps = 17/474 (3%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L+IY++ +R ++ F P+TPG+V +YVCG+T YDYCHLGHAR+++VFD V RWL+ Y V
Sbjct: 2 LKIYDTLTRSRREFIPLTPGEVRMYVCGMTVYDYCHLGHARVLVVFDSVVRWLQTLGYKV 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
YVRNITD+DDKII A +N+E LT+R+I+A +ED++ L + P ++P AT Y+ +
Sbjct: 62 IYVRNITDVDDKIIRRALENHEPFSALTARYIQAMEEDAMALGVISPSFEPRATEYVDSM 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD 182
+ MIE L+ LAY +NG DV Y VR F YGKLSG+ + + E + K+D
Sbjct: 122 IAMIESLLNRELAYVASNG----DVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDTNKRD 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
PLDF LWK +K ++P W+S WG GRPGWHIECSAMS + LG FDIHGGGQDL+FPH
Sbjct: 178 PLDFVLWKAAKPDEP---SWDSPWGKGRPGWHIECSAMSEHYLGDQFDIHGGGQDLQFPH 234
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQSEG + H VNYWMH+GFV+++N+KMSKS GNF T+R++L +Y PEV+RFFI+
Sbjct: 235 HENEIAQSEGVHGHSHVNYWMHNGFVRVDNEKMSKSLGNFFTVREVLTRYQPEVVRFFIV 294
Query: 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIKD-IPKINYK---KIIDL-NEPHAKRFIIAM 357
R+HYRS +NYS+ +LN A+ +L RLY +K+ P + + +ID N +A+RF+ AM
Sbjct: 295 RAHYRSPLNYSDAHLNDARSALERLYTVLKNHAPSQDSEVATAVIDWENNVYARRFMSAM 354
Query: 358 NDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKK 417
NDDFNTP A+++LFDLA+ N+ A L+ LG LGLL+ ++L+ + +
Sbjct: 355 NDDFNTPEAVAVLFDLASEANRTGDSHYASLLKALGGVLGLLQQPPQQYLQYPAHLQ--- 411
Query: 418 NVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
+ YS +I+ I R +ARK +NF +AD +RQ+L GIILED P G T WRR
Sbjct: 412 DGQYSVEEIENMIQQRLQARKERNFAQADTLRQQLAEAGIILEDSPQGTT-WRR 464
>sp|A9BZ45|SYC_DELAS Cysteine--tRNA ligase OS=Delftia acidovorans (strain DSM 14801 /
SPH-1) GN=cysS PE=3 SV=1
Length = 461
Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/469 (50%), Positives = 317/469 (67%), Gaps = 20/469 (4%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
+LRIYN+ SR + F PI PG V +YVCG+T YD CHLGHAR M+ FD+VQRWLR + +
Sbjct: 2 SLRIYNTLSRALEAFSPIEPGHVRMYVCGMTVYDLCHLGHARSMVAFDVVQRWLRASGHR 61
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
VTYVRNITDIDDKII A +N E+I++LT R I A +D+ L I+ P ++P AT Y+PQ
Sbjct: 62 VTYVRNITDIDDKIIRRAVENGETIRSLTDRMIDALHQDADALGIERPTHEPRATEYVPQ 121
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKK 181
+L MI +L GLAYQ +G DVN++VR F YGKLSG+ + + + K+
Sbjct: 122 MLSMIGRLQDKGLAYQGTDG----DVNFAVRKFPGYGKLSGKSLDELQAGERVAVQDGKQ 177
Query: 182 DPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241
DPLDF LWK +K +P E++W S WG GRPGWHIECSAM C +LG FDIHGGG DL+FP
Sbjct: 178 DPLDFVLWKSAKPAEPEEVKWASPWGVGRPGWHIECSAMGCEMLGESFDIHGGGADLQFP 237
Query: 242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
HHENEIAQSEGA F WMH+GF+ ++N+KMSKS GNF TIRD+LK+Y+ E +RFF+
Sbjct: 238 HHENEIAQSEGATGKPFSQVWMHNGFINVDNEKMSKSLGNFFTIRDVLKEYDAETVRFFV 297
Query: 302 LRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDF 361
+RSHYRS +NYS+++LN A+ +L RLY A+ + +D N P A RF AM++DF
Sbjct: 298 VRSHYRSPLNYSDVHLNDARGALKRLYTALSLVAPAEVA--VDWNHPAAARFKAAMDEDF 355
Query: 362 NTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNY 421
TP A+++LF+LA +N++KS + A L+ L LGLL+ FL+
Sbjct: 356 GTPEAVAVLFELAAEVNRSKSAETAGLLKALAGCLGLLQGDPQAFLQ----------AGT 405
Query: 422 SENDI---KLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKT 467
SE D + +I R+ A+ K++ EAD+IR+ L+ GI+L+D P G T
Sbjct: 406 SEMDAGAIEAQIAARAAAKAAKDWAEADRIRKALLEQGIVLKDSPAGTT 454
>sp|Q7NX82|SYC_CHRVO Cysteine--tRNA ligase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=cysS PE=3 SV=2
Length = 457
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/469 (49%), Positives = 318/469 (67%), Gaps = 15/469 (3%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L +YN+ +R+K+ F PI PGKVS+YVCG+T YD CH+GHAR++ FD++ RWL+ + YDV
Sbjct: 2 LSLYNTLTRQKEAFKPIEPGKVSMYVCGMTVYDLCHIGHARMLAAFDVIYRWLKASGYDV 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
YVRNITDI+DKII A + + + L I ++D+ L + PP ++P AT+++ +
Sbjct: 62 NYVRNITDIEDKIIKRALERGITPEQLVEETIADMRQDAAALGLLPPTHEPRATHHVGGM 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD 182
+ MIE+LI NG AY NGDV Y+VR F YGKLSGR + + E + K+D
Sbjct: 122 VAMIEQLIANGKAYP----AANGDVYYAVREFEGYGKLSGRTLDKLRAGERVEVDPNKRD 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
PLDF LWK +K P E W+S WG GRPGWHIECS MSC+ LG HFDIHGGG+DL+FPH
Sbjct: 178 PLDFVLWKAAK---PGEPSWDSPWGKGRPGWHIECSVMSCHHLGEHFDIHGGGEDLQFPH 234
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQSEGA+ H++VNYW+H+GF+ ++ +KMSKS GNF TIRD+L+ ++ EVIRFFI+
Sbjct: 235 HENEIAQSEGAHGHQYVNYWLHNGFINVDGEKMSKSLGNFFTIRDVLQHFDGEVIRFFIV 294
Query: 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFN 362
RSHYRS +NY++ LN AK L RLY A++ I ++ ID N +A RF AM+DDF
Sbjct: 295 RSHYRSPVNYTDSILNDAKHGLTRLYTALRGI-ELPTSDGIDWNHAYAARFKAAMDDDFG 353
Query: 363 TPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYS 422
T A+++LF+LA +NK++ ++A+ L+ LG LGLL + FL+ + S
Sbjct: 354 TSEAVAVLFELAGEVNKSRDPQLARLLKDLGGVLGLLTRDPEVFLQGGV-----GEGELS 408
Query: 423 ENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
++ I R +AR K++ E+D+IR EL GI+LED G T WRR
Sbjct: 409 AEQVEALIQARKDARAAKDWAESDRIRDELTAKGIVLEDGAGG-TIWRR 456
>sp|A1VRB4|SYC_POLNA Cysteine--tRNA ligase OS=Polaromonas naphthalenivorans (strain CJ2)
GN=cysS PE=3 SV=1
Length = 463
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/473 (49%), Positives = 316/473 (66%), Gaps = 24/473 (5%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
+LRIYN+ SR + F P+ PG+V +YVCG+T YD CH+GHAR+M+ FD+VQRWL+ + Y+
Sbjct: 2 SLRIYNTLSRAVEDFSPLVPGQVRMYVCGMTIYDLCHIGHARMMMAFDVVQRWLKASGYE 61
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
V YVRNITDIDDKII A + +I+ LT I A +D L I+PP +P AT Y+PQ
Sbjct: 62 VRYVRNITDIDDKIIKRAVERGITIRALTDEMIAAMHQDIGALGIEPPTLEPRATEYVPQ 121
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNF--- 179
+L MI KL GLAY+ ++G D+NY+VR F YGKLSG+ S + + E+
Sbjct: 122 MLAMIGKLEEKGLAYRGSSG----DMNYAVRKFPGYGKLSGK--SLDELRAGERVAVLEG 175
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSK-----WGAGRPGWHIECSAMSCYLLGSHFDIHGG 234
K DPLDF LWK +K ++P + +W+S +G GRPGWHIECSAMSC LG FDIHGG
Sbjct: 176 KDDPLDFVLWKSAKESEPEDAKWDSAALGHDYGKGRPGWHIECSAMSCQTLGETFDIHGG 235
Query: 235 GQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNP 294
G DL+FPHHENEIAQSEGA +W+H+GFV+++N+KMSKS GNF TIRD+L+KY+
Sbjct: 236 GADLQFPHHENEIAQSEGANGKPLARFWVHNGFVRVDNEKMSKSLGNFFTIRDVLQKYDA 295
Query: 295 EVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFI 354
E IRFFI+R+HYRS +NYS+ +L+ A+ SL RLY A+ + + ID +P A RF
Sbjct: 296 ETIRFFIIRAHYRSALNYSDAHLDDARNSLKRLYTALALVAPATVE--IDWADPFAARFK 353
Query: 355 IAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTE 414
AM++DF TP AI++LF+LA +NK S + A L+ LG LGLL+ +L
Sbjct: 354 AAMDEDFGTPEAIAVLFELAGEVNKTHSAERAGLLKSLGACLGLLQGEPSAYL------- 406
Query: 415 RKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKT 467
+ + I+ I R++A+K ++F AD+IR EL+ GI+L+D P G T
Sbjct: 407 -QAGAGLDDAAIQALITQRADAKKARDFAAADRIRTELLGQGIVLKDSPLGTT 458
>sp|Q9JXE6|SYC_NEIMB Cysteine--tRNA ligase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=cysS PE=3 SV=1
Length = 473
Score = 480 bits (1236), Expect = e-135, Method: Compositional matrix adjust.
Identities = 241/483 (49%), Positives = 319/483 (66%), Gaps = 31/483 (6%)
Query: 6 IYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTY 65
IYN+ +R+K+ F PI P V +YVCG+T YDYCHLGHAR+M+VFD++ RWLR Y +TY
Sbjct: 4 IYNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTY 63
Query: 66 VRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILK 125
VRNITDIDDKIIA A +N E+I LT+RFI+A ED+ L + PD +P AT IPQ++
Sbjct: 64 VRNITDIDDKIIARAAENGETIGKLTARFIQAMHEDADALGVLRPDIEPKATENIPQMIA 123
Query: 126 MIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKDPL 184
MIE LI NG AY NGDV Y+VR F YG+LSG+ + + E + FK+DPL
Sbjct: 124 MIETLIQNGKAYP----AANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPL 179
Query: 185 DFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHE 244
DF LWK +K +P W S WG GRPGWHIECSAMS L G FDIHGGG DL+FPHHE
Sbjct: 180 DFVLWKAAKAGEP---AWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHE 236
Query: 245 NEIAQSEGAYKH----------------KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDL 288
NEIAQS GA H V YW+H+GF++++ +KMSKS GNF TIR++
Sbjct: 237 NEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREV 296
Query: 289 LKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEP 348
LK+Y+PEV+RFFILR+HYRS +NYS+ +L+ AK +L RLY +K+ P + + +
Sbjct: 297 LKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPAD-PMPSEAGDD 355
Query: 349 HAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLK 408
+ +RF +AMNDDF+T A+++LF+LA +NK ++A +L+ LG +GLL+ EFL+
Sbjct: 356 YTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGRLKALGGIIGLLQRDPTEFLQ 415
Query: 409 NNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTE 468
++ S +I+ I R +AR KN+ E+D+IR L + IILED G T
Sbjct: 416 GGAASD-----GLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDNAGGTT- 469
Query: 469 WRR 471
WRR
Sbjct: 470 WRR 472
>sp|Q3J8Y9|SYC_NITOC Cysteine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848) GN=cysS PE=3 SV=1
Length = 485
Score = 479 bits (1233), Expect = e-134, Method: Compositional matrix adjust.
Identities = 241/491 (49%), Positives = 322/491 (65%), Gaps = 31/491 (6%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
LRIYNS +R+K+ F PI GKV +YVCG+T YD CH+GHAR+M+VFD+V R+LR + ++V
Sbjct: 2 LRIYNSLTRRKEEFIPIESGKVRMYVCGMTVYDLCHVGHARVMVVFDMVVRYLRASGFEV 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
YVRNITDIDDKII A + ESI TLT+R+I+A ED L I PPD +P AT + I
Sbjct: 62 IYVRNITDIDDKIIHRANERGESIHTLTARYIQALHEDEASLQILPPDREPRATESMEAI 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD 182
L M+ +L+ G AYQ NG D+ Y V +F YG LSGR + + + N K D
Sbjct: 122 LAMVRQLLDQGYAYQGENG----DIYYDVSHFEGYGALSGRHLEDLRAGERVQVNEAKTD 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
PLDF LWK +K+ +P W S WG GRPGWHIECSAMS LG+HFDIHGGGQDL+FPH
Sbjct: 178 PLDFVLWKAAKSGEPA---WESPWGPGRPGWHIECSAMSIQELGTHFDIHGGGQDLQFPH 234
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQSE A KFVNYWMH+GFV++N++KMSKS GNF T+R++L+ Y+PEV+R+FIL
Sbjct: 235 HENEIAQSEAATGGKFVNYWMHNGFVRLNDEKMSKSLGNFFTVREVLEHYHPEVLRYFIL 294
Query: 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYK--------KIIDLNEPHAKRFI 354
SHYRS +NY++ L+ AK ++ RLY A++ IP+ + + D +P RF
Sbjct: 295 SSHYRSPLNYTKQQLDTAKAAMTRLYTALRGIPRGEDRASAQGLSWEFTDGGDPFVLRFR 354
Query: 355 IAMNDDFNTPVAISILFDLANIINK-------NKSIKMAKQLRGLGNWLGLLEYSSDEFL 407
AM+DDFNTP A+++L ++ + +N+ K +A LR LG LGLL + ++FL
Sbjct: 355 EAMDDDFNTPEALALLNEVRHALNRAREAGDTEKGQSLAVLLRSLGGILGLLAHEPEQFL 414
Query: 408 KNNIY-------TERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILE 460
+++ + S + I+ + R+ ARK K++ EAD+IR L + GI LE
Sbjct: 415 RDSRQVAAIPDTAAAGEEAVLSHDGIEQLVAQRTVARKNKDWAEADRIRGILKDQGITLE 474
Query: 461 DMPNGKTEWRR 471
D G T WRR
Sbjct: 475 DTAAG-TLWRR 484
>sp|C5CPX0|SYC_VARPS Cysteine--tRNA ligase OS=Variovorax paradoxus (strain S110) GN=cysS
PE=3 SV=1
Length = 459
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/466 (51%), Positives = 318/466 (68%), Gaps = 14/466 (3%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
+LRIYN+ SR+ + F P+ PG+V +YVCG+T YD CHLGHAR MI FD+VQRWL+ +
Sbjct: 2 SLRIYNTLSRELEEFSPLQPGRVRMYVCGMTVYDLCHLGHARSMIAFDLVQRWLKASGLA 61
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
VTYVRNITDIDDKII A +N E+I++LT R I A ED+ L I+ P ++P AT+YIPQ
Sbjct: 62 VTYVRNITDIDDKIIRRAVENGETIRSLTDRMIDALHEDADALGIERPTHEPRATDYIPQ 121
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKK 181
+L MI L GLAY+ NG DVNY+VR F YGKLSG+ I + + + K
Sbjct: 122 MLSMIGTLEKKGLAYRAENG----DVNYAVRKFPGYGKLSGKSIDELHAGERVAVLDGKD 177
Query: 182 DPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241
DPLD LWK +K ++P E++W S++G GRPGWHIECSAM+C LLG DIHGGG+DL+FP
Sbjct: 178 DPLDPVLWKSAKPSEPEEVKWASEFGPGRPGWHIECSAMACELLGETLDIHGGGEDLQFP 237
Query: 242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
HHENEIAQSEGA NYWMH+GF+ +N+KMSKS GNF IRD+LKKY+ E IRFF+
Sbjct: 238 HHENEIAQSEGATGKPLANYWMHNGFIVTDNEKMSKSLGNFFLIRDVLKKYDAETIRFFV 297
Query: 302 LRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDF 361
+R+HYR +NYS+++L+ A+ SL RLY ++ D+ ID N+P+A RF AM++DF
Sbjct: 298 VRAHYRRPLNYSDVHLDDARASLKRLYTSL-DLVAPQALAAIDWNDPYAARFKAAMDEDF 356
Query: 362 NTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNY 421
TP A+++LFDLA +N+ +S A L+ LG L +L+ FL +
Sbjct: 357 ATPEAVAVLFDLAGEVNRTQSPAQAGLLKALGGCLNILQDDPKRFL--------RAGTTL 408
Query: 422 SENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKT 467
E I+ +I R+ A+ KNF EAD+IR +L+ GI+L+D P G T
Sbjct: 409 DEATIQAQIDARAAAKAAKNFAEADRIRNDLLAQGIVLKDSPTGTT 454
>sp|Q21YS0|SYC_RHOFD Cysteine--tRNA ligase OS=Rhodoferax ferrireducens (strain DSM 15236
/ ATCC BAA-621 / T118) GN=cysS PE=3 SV=2
Length = 459
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/473 (49%), Positives = 312/473 (65%), Gaps = 19/473 (4%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
+LRIYN+ SR + P+ PG V +YVCG+T YD CHLGHAR M+ FD+VQRWL+++
Sbjct: 2 SLRIYNTLSRAIEPLIPLQPGHVRMYVCGMTVYDLCHLGHARAMVAFDVVQRWLKVSGLR 61
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
VTYVRN+TDIDDKII A +N ESI+ LT R + A +D+ L I+ P ++P AT ++PQ
Sbjct: 62 VTYVRNVTDIDDKIIKRALENGESIRALTERMVDALHQDADALGIERPTHEPRATEFVPQ 121
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEK---NNF 179
+L +I +L GLAYQ +NGDVNY+VR F YGKLSG+ S + + E+ +
Sbjct: 122 MLSLIGRLEQKGLAYQ----AVNGDVNYAVRKFPGYGKLSGK--SLDELRAGERVAVADG 175
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K DPLDF LWK +K N+P + +W+S +G GRPGWHIECSAM +LG DIHGGG DL+
Sbjct: 176 KDDPLDFVLWKTAKPNEPLDAKWDSVYGQGRPGWHIECSAMCGQMLGETVDIHGGGADLQ 235
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQSEGA + WMH+GFV +N+KMSKS GNF TIRD+L +Y+ E RF
Sbjct: 236 FPHHENEIAQSEGATGKPLASIWMHNGFVTRDNEKMSKSLGNFFTIRDILARYDAETTRF 295
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
FI+R+HYRS +N+S+ +L+ A+ SL RLY A+ D+ ID +P A RF AM++
Sbjct: 296 FIIRAHYRSALNHSDAHLDDARNSLKRLYTAL-DLVAPEPLLEIDWRQPFAARFKAAMDE 354
Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
DF TP A++++F+LA +NK + K+A L+ LG LGLL+ FL +
Sbjct: 355 DFGTPEAVAVMFELATEVNKTRDPKLAGLLKALGACLGLLQGDPKVFL--------QAGA 406
Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
I I R+ A+ KNF EAD+IRQ+L+ GI+L+D G T W +
Sbjct: 407 TLDAASIAALIAQRTAAKAAKNFAEADRIRQDLLARGIVLKDSAAG-TVWEVV 458
>sp|Q9JWJ3|SYC_NEIMA Cysteine--tRNA ligase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=cysS PE=3 SV=1
Length = 699
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/483 (50%), Positives = 319/483 (66%), Gaps = 31/483 (6%)
Query: 6 IYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTY 65
IYN+ +R+K+ F PI P V +YVCG+T YDYCHLGHAR+M+VFD++ RWLR Y +TY
Sbjct: 230 IYNTLTRQKEPFAPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTY 289
Query: 66 VRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILK 125
VRNITDIDDKIIA A +N E+I LT+RFI+A ED+ L + PD +P AT IPQ++
Sbjct: 290 VRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIA 349
Query: 126 MIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKDPL 184
MIE LI NG AY NGDV Y+VR F YG+LSG+ + + E + FK+DPL
Sbjct: 350 MIETLIQNGKAYP----AANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVDGFKRDPL 405
Query: 185 DFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHE 244
DF LWK +K +P W S WG GRPGWHIECSAMS L G+ FDIHGGG DL+FPHHE
Sbjct: 406 DFVLWKAAKAGEP---AWESPWGNGRPGWHIECSAMSENLFGNTFDIHGGGADLQFPHHE 462
Query: 245 NEIAQSEGAYKH----------------KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDL 288
NEIAQS GA H V YW+H+GF++++ +KMSKS GNF TIR++
Sbjct: 463 NEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREV 522
Query: 289 LKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEP 348
LK+Y+PEV+RFFILR+HYRS +NYS+ +L+ AK +L RLY +K+ P + ++N+
Sbjct: 523 LKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFDLSENVND- 581
Query: 349 HAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLK 408
+ +RF AMNDDF T A+++LF+LA +NK ++A L+ LG +GLL+ EFL+
Sbjct: 582 YTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQRDPTEFLQ 641
Query: 409 NNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTE 468
++ S +I+ I R +AR KN+ E+D+IR L + IILED G T
Sbjct: 642 GGAASD-----GLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDNAGGTT- 695
Query: 469 WRR 471
WRR
Sbjct: 696 WRR 698
>sp|B9MAU5|SYC_ACIET Cysteine--tRNA ligase OS=Acidovorax ebreus (strain TPSY) GN=cysS
PE=3 SV=1
Length = 458
Score = 477 bits (1227), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 314/466 (67%), Gaps = 15/466 (3%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
+LRIYN+ SR + F PI PG V +YVCG+T YD CHLGHAR MI FD+VQRWLR +
Sbjct: 2 SLRIYNTLSRALEEFSPIEPGHVRMYVCGMTVYDLCHLGHARSMIAFDVVQRWLRASGLA 61
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
VTYVRNITDIDDKII A +N E+I++LT R I A +D+ L I+ P ++P AT Y+PQ
Sbjct: 62 VTYVRNITDIDDKIIKRAVENGETIRSLTDRMIDALHQDADALGIERPTHEPRATAYVPQ 121
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKK 181
+L MI L GLAYQ NG DVNY+VR F YGKLSG+ + N + + K
Sbjct: 122 MLDMIGTLQGKGLAYQAGNG----DVNYAVRKFPGYGKLSGKSLDELNAGERVAVQDGKH 177
Query: 182 DPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241
DPLDF LWK +K +P +++W S +G GRPGWHIECSAM C LLG FDIHGGG DL+FP
Sbjct: 178 DPLDFVLWKSAKPEEPADVKWRSPFGEGRPGWHIECSAMGCALLGESFDIHGGGADLQFP 237
Query: 242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
HHENEIAQSEGA F WMH+GF+ ++N+KMSKS GNF TIRD+LK+Y+ E +RFF+
Sbjct: 238 HHENEIAQSEGATGKPFARLWMHNGFINVDNEKMSKSLGNFFTIRDVLKEYDAETVRFFV 297
Query: 302 LRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDF 361
+RSHYRS +NYS ++L+ A+ +L RLY A+ + + +D E +A RF AM++DF
Sbjct: 298 VRSHYRSPLNYSNVHLDDARAALKRLYTALSLVAPAPVE--VDWAEGYAARFKAAMDEDF 355
Query: 362 NTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNY 421
TP A+++LFDLA +N++KS A L+ LG LGLL+ +FL K
Sbjct: 356 GTPEAVAVLFDLAGEVNRSKSPAAAGLLKALGRHLGLLQADPQDFL--------KAGAGL 407
Query: 422 SENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKT 467
E I+ +I R+ A+ KNF EAD+IR +L+ GI+L+D G T
Sbjct: 408 DEAAIQAQIAARAAAKAAKNFAEADRIRNDLLAQGIVLKDSATGTT 453
>sp|Q5F5D6|SYC_NEIG1 Cysteine--tRNA ligase OS=Neisseria gonorrhoeae (strain ATCC 700825
/ FA 1090) GN=cysS PE=3 SV=1
Length = 473
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/486 (50%), Positives = 317/486 (65%), Gaps = 37/486 (7%)
Query: 6 IYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTY 65
IYN+ +R+K+ F PI P V +YVCG+T YDYCHLGHAR+M+VFD++ RWLR Y +TY
Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTY 63
Query: 66 VRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILK 125
VRNITDIDDKIIA A +N E+I L +RFI+A ED+ L + PD +P AT IPQ++
Sbjct: 64 VRNITDIDDKIIARAAENGETIGELNARFIQAMHEDADALGVLRPDIEPKATENIPQMIA 123
Query: 126 MIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKDPL 184
MIE LI NG AY NGDV Y+VR F YG+LSG+ + + E + FK+DPL
Sbjct: 124 MIETLIQNGKAYP----AANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPL 179
Query: 185 DFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHE 244
DF LWK +K +P W S WG GRPGWHIECSAMS L G FDIHGGG DL+FPHHE
Sbjct: 180 DFVLWKAAKAGEP---AWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHE 236
Query: 245 NEIAQSEGAYKH----------------KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDL 288
NEIAQS GA H V YW+H+GF++++ +KMSKS GNF TIR++
Sbjct: 237 NEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREV 296
Query: 289 LKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNE- 347
LK+Y+PEV+RFFILR+HYRS +NYS+ +L+ AK +L RLY +K+ P + DL+E
Sbjct: 297 LKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEF----DLSEN 352
Query: 348 --PHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDE 405
+ +RF AMNDDF T A+++LF+LA +NK +A L+ LG +GLL+ + E
Sbjct: 353 ANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLLQRNPIE 412
Query: 406 FLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNG 465
FL+ ++ S +I+ I R +AR KN+ E+D+IR L + IILED G
Sbjct: 413 FLQGGAVSD-----GLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDSAGG 467
Query: 466 KTEWRR 471
T WRR
Sbjct: 468 TT-WRR 472
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,850,802
Number of Sequences: 539616
Number of extensions: 8191765
Number of successful extensions: 32090
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 314
Number of HSP's that attempted gapping in prelim test: 25883
Number of HSP's gapped (non-prelim): 2467
length of query: 472
length of database: 191,569,459
effective HSP length: 121
effective length of query: 351
effective length of database: 126,275,923
effective search space: 44322848973
effective search space used: 44322848973
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)