Query psy14486
Match_columns 472
No_of_seqs 325 out of 2426
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 21:02:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0215 CysS Cysteinyl-tRNA sy 100.0 1E-135 3E-140 1024.0 41.8 453 3-472 1-464 (464)
2 PRK14535 cysS cysteinyl-tRNA s 100.0 4E-125 8E-130 986.2 47.3 456 3-472 227-699 (699)
3 PLN02946 cysteine-tRNA ligase 100.0 1E-125 3E-130 986.2 42.9 459 4-472 60-545 (557)
4 PRK14536 cysS cysteinyl-tRNA s 100.0 2E-122 4E-127 954.6 45.6 454 1-471 1-489 (490)
5 PRK14534 cysS cysteinyl-tRNA s 100.0 3E-120 6E-125 933.2 46.1 450 1-472 1-481 (481)
6 PRK00260 cysS cysteinyl-tRNA s 100.0 4E-117 8E-122 924.6 46.9 454 1-472 1-463 (463)
7 TIGR00435 cysS cysteinyl-tRNA 100.0 3E-117 6E-122 923.1 46.0 452 4-471 1-465 (465)
8 PTZ00399 cysteinyl-tRNA-synthe 100.0 6E-113 1E-117 916.5 44.4 456 3-471 39-547 (651)
9 KOG2007|consensus 100.0 1E-111 3E-116 837.3 33.2 448 3-471 34-521 (586)
10 TIGR03447 mycothiol_MshC cyste 100.0 2E-106 4E-111 816.0 34.9 380 3-398 17-409 (411)
11 PRK12418 cysteinyl-tRNA synthe 100.0 2E-101 4E-106 777.3 33.9 366 18-398 2-382 (384)
12 PF01406 tRNA-synt_1e: tRNA sy 100.0 3E-102 6E-107 748.4 21.2 299 17-322 1-300 (300)
13 cd00672 CysRS_core catalytic c 100.0 2.5E-64 5.3E-69 473.5 21.6 213 5-313 1-213 (213)
14 PRK11893 methionyl-tRNA synthe 100.0 7.4E-57 1.6E-61 479.7 29.8 338 24-382 2-426 (511)
15 COG0143 MetG Methionyl-tRNA sy 100.0 2.4E-55 5.2E-60 458.9 34.1 348 26-382 6-461 (558)
16 PLN02224 methionine-tRNA ligas 100.0 1.4E-52 3E-57 447.3 32.6 346 27-382 71-493 (616)
17 cd00668 Ile_Leu_Val_MetRS_core 100.0 4E-54 8.6E-59 430.5 18.9 277 25-312 2-312 (312)
18 PRK00133 metG methionyl-tRNA s 100.0 1.2E-50 2.7E-55 442.1 32.5 345 29-382 8-453 (673)
19 TIGR00398 metG methionyl-tRNA 100.0 2.1E-50 4.6E-55 431.2 32.4 346 27-382 3-454 (530)
20 PLN02610 probable methionyl-tR 100.0 2.6E-50 5.7E-55 441.5 32.2 355 19-382 12-482 (801)
21 PRK12267 methionyl-tRNA synthe 100.0 1.4E-49 3.1E-54 433.1 31.1 346 26-382 5-426 (648)
22 PRK12268 methionyl-tRNA synthe 100.0 1.1E-48 2.5E-53 420.2 30.2 348 26-382 6-460 (556)
23 PF09334 tRNA-synt_1g: tRNA sy 100.0 1.3E-49 2.9E-54 406.7 12.2 296 28-332 2-388 (391)
24 cd00814 MetRS_core catalytic c 100.0 4.8E-48 1E-52 387.3 21.4 276 27-312 4-319 (319)
25 KOG0436|consensus 100.0 7.2E-47 1.6E-51 368.0 27.8 345 26-382 40-474 (578)
26 cd00812 LeuRS_core catalytic c 100.0 3E-45 6.4E-50 366.0 15.4 272 26-314 3-314 (314)
27 cd00817 ValRS_core catalytic c 100.0 8E-43 1.7E-47 357.2 17.0 279 25-312 3-382 (382)
28 cd00818 IleRS_core catalytic c 100.0 1.3E-42 2.9E-47 350.0 14.3 276 24-312 2-338 (338)
29 PRK13208 valS valyl-tRNA synth 100.0 1.2E-40 2.6E-45 370.6 27.0 351 23-382 38-656 (800)
30 PRK01611 argS arginyl-tRNA syn 100.0 1.5E-40 3.3E-45 352.1 26.2 313 21-382 109-466 (507)
31 TIGR00395 leuS_arch leucyl-tRN 100.0 1.6E-39 3.4E-44 364.9 30.2 155 227-382 572-740 (938)
32 TIGR00422 valS valyl-tRNA synt 100.0 6E-39 1.3E-43 359.5 30.4 351 23-382 33-651 (861)
33 COG0525 ValS Valyl-tRNA synthe 100.0 3.3E-38 7.2E-43 338.9 32.5 360 15-382 22-651 (877)
34 PRK05729 valS valyl-tRNA synth 100.0 7.6E-39 1.6E-43 358.6 28.0 352 23-382 36-647 (874)
35 PLN02943 aminoacyl-tRNA ligase 100.0 1.2E-37 2.7E-42 349.6 26.6 352 23-382 88-721 (958)
36 PRK14900 valS valyl-tRNA synth 100.0 3.7E-37 8E-42 348.0 27.5 352 23-382 48-666 (1052)
37 PRK00390 leuS leucyl-tRNA synt 100.0 1.3E-36 2.9E-41 336.6 28.9 124 26-154 33-161 (805)
38 PRK05743 ileS isoleucyl-tRNA s 100.0 3.5E-36 7.7E-41 337.1 27.2 153 227-382 544-719 (912)
39 PRK06039 ileS isoleucyl-tRNA s 100.0 1.8E-35 3.8E-40 333.8 30.6 352 23-382 41-722 (975)
40 TIGR00396 leuS_bact leucyl-tRN 100.0 1.1E-35 2.4E-40 330.0 28.1 127 23-154 27-158 (842)
41 TIGR00392 ileS isoleucyl-tRNA 100.0 2E-34 4.4E-39 323.4 28.0 126 24-154 37-182 (861)
42 PRK13804 ileS isoleucyl-tRNA s 100.0 3E-34 6.5E-39 322.4 28.9 152 227-382 582-757 (961)
43 PLN02882 aminoacyl-tRNA ligase 100.0 8E-34 1.7E-38 322.3 32.3 155 227-382 566-751 (1159)
44 PLN02843 isoleucyl-tRNA synthe 100.0 3.7E-34 8E-39 321.6 28.4 154 227-382 563-746 (974)
45 PRK12300 leuS leucyl-tRNA synt 100.0 5.2E-34 1.1E-38 319.2 28.9 154 228-382 530-694 (897)
46 PTZ00419 valyl-tRNA synthetase 100.0 7.8E-34 1.7E-38 321.8 25.3 352 23-382 60-755 (995)
47 PLN02563 aminoacyl-tRNA ligase 100.0 9.2E-34 2E-38 315.5 24.7 126 24-154 109-240 (963)
48 cd00674 LysRS_core_class_I cat 100.0 1.9E-33 4.1E-38 281.2 22.9 283 24-332 19-333 (353)
49 PLN02381 valyl-tRNA synthetase 100.0 3.7E-33 8E-38 315.2 27.1 352 24-382 129-820 (1066)
50 COG0495 LeuS Leucyl-tRNA synth 100.0 1.2E-32 2.7E-37 297.1 27.4 364 13-382 20-696 (814)
51 TIGR00456 argS arginyl-tRNA sy 100.0 1.6E-31 3.6E-36 286.3 29.0 344 9-400 96-562 (566)
52 KOG1247|consensus 100.0 6.1E-33 1.3E-37 270.3 14.7 359 14-382 4-470 (567)
53 PRK00750 lysK lysyl-tRNA synth 100.0 1E-31 2.2E-36 283.0 22.6 286 24-333 23-338 (510)
54 PTZ00427 isoleucine-tRNA ligas 100.0 8.4E-31 1.8E-35 296.8 27.6 153 228-382 673-856 (1205)
55 PRK12451 arginyl-tRNA syntheta 100.0 2.7E-29 5.8E-34 268.4 31.0 329 22-400 112-558 (562)
56 TIGR00467 lysS_arch lysyl-tRNA 100.0 2.7E-30 5.9E-35 270.3 20.2 275 24-334 18-333 (515)
57 cd00671 ArgRS_core catalytic c 100.0 1.1E-29 2.3E-34 240.1 20.0 207 24-280 1-212 (212)
58 COG0018 ArgS Arginyl-tRNA synt 100.0 2.7E-28 5.8E-33 257.8 29.3 332 21-400 115-573 (577)
59 COG0060 IleS Isoleucyl-tRNA sy 100.0 5.1E-29 1.1E-33 271.3 23.7 152 230-382 557-729 (933)
60 PF00133 tRNA-synt_1: tRNA syn 100.0 1.9E-29 4E-34 272.5 16.9 127 23-154 23-169 (601)
61 PLN02959 aminoacyl-tRNA ligase 100.0 1.3E-27 2.9E-32 271.0 29.0 146 228-374 671-831 (1084)
62 PRK04156 gltX glutamyl-tRNA sy 100.0 9.1E-29 2E-33 259.3 16.2 259 22-323 99-404 (567)
63 PLN02286 arginine-tRNA ligase 100.0 1.1E-26 2.4E-31 248.6 27.0 327 22-400 116-572 (576)
64 KOG0435|consensus 99.9 1.2E-26 2.7E-31 237.9 21.9 110 31-140 65-177 (876)
65 KOG0432|consensus 99.9 1.1E-26 2.4E-31 244.7 18.8 354 22-382 74-759 (995)
66 cd00802 class_I_aaRS_core cata 99.9 1.1E-25 2.3E-30 199.8 13.0 142 27-279 1-143 (143)
67 COG1384 LysS Lysyl-tRNA synthe 99.9 9.9E-25 2.1E-29 221.2 16.5 278 24-334 19-338 (521)
68 PF01921 tRNA-synt_1f: tRNA sy 99.9 1.2E-25 2.5E-30 222.6 9.1 279 23-332 22-341 (360)
69 KOG0433|consensus 99.9 1.9E-21 4.1E-26 201.7 27.7 145 229-375 567-737 (937)
70 cd07963 Anticodon_Ia_Cys Antic 99.9 5.2E-22 1.1E-26 178.7 16.4 149 315-471 2-156 (156)
71 PF00750 tRNA-synt_1d: tRNA sy 99.9 1.2E-22 2.6E-27 206.1 12.4 246 20-314 17-354 (354)
72 cd09287 GluRS_non_core catalyt 99.9 3.3E-21 7.2E-26 182.4 15.7 211 28-322 4-231 (240)
73 TIGR00464 gltX_bact glutamyl-t 99.8 8.7E-19 1.9E-23 183.2 18.2 234 31-303 7-270 (470)
74 PLN03233 putative glutamate-tR 99.8 1.4E-18 3.1E-23 180.6 16.1 253 31-323 17-312 (523)
75 PRK12558 glutamyl-tRNA synthet 99.8 1.1E-18 2.4E-23 179.5 14.2 251 31-319 8-287 (445)
76 PRK01406 gltX glutamyl-tRNA sy 99.8 7E-18 1.5E-22 176.5 17.7 237 31-303 10-280 (476)
77 PRK12410 glutamylglutaminyl-tR 99.8 4.7E-18 1E-22 174.0 15.7 249 31-318 5-280 (433)
78 PRK14895 gltX glutamyl-tRNA sy 99.8 1.3E-17 2.8E-22 173.4 17.9 253 31-319 10-287 (513)
79 KOG0434|consensus 99.8 3.7E-17 8.1E-22 168.6 20.5 154 228-382 554-735 (1070)
80 TIGR00463 gltX_arch glutamyl-t 99.7 4.2E-17 9.2E-22 171.5 17.2 252 31-323 99-395 (560)
81 PTZ00402 glutamyl-tRNA synthet 99.7 4.8E-17 1E-21 171.0 17.1 254 31-323 58-354 (601)
82 PRK05347 glutaminyl-tRNA synth 99.7 4.6E-17 9.9E-22 170.0 15.5 251 29-323 33-336 (554)
83 PRK05710 glutamyl-Q tRNA(Asp) 99.7 5.9E-17 1.3E-21 158.7 14.5 221 30-304 10-262 (299)
84 cd00418 GlxRS_core catalytic c 99.7 1.5E-16 3.4E-21 150.1 16.1 176 31-305 7-184 (230)
85 PLN02627 glutamyl-tRNA synthet 99.7 3.6E-17 7.8E-22 170.3 12.8 248 31-319 51-341 (535)
86 PRK14703 glutaminyl-tRNA synth 99.7 1.2E-16 2.6E-21 173.6 16.0 253 30-323 36-339 (771)
87 cd00807 GlnRS_core catalytic c 99.7 3.1E-16 6.6E-21 148.2 16.6 206 31-322 7-229 (238)
88 TIGR03838 queuosine_YadB gluta 99.7 5.1E-17 1.1E-21 157.4 11.3 241 31-317 6-271 (272)
89 COG0008 GlnS Glutamyl- and glu 99.7 7.7E-17 1.7E-21 166.8 12.7 250 28-320 12-300 (472)
90 PLN02907 glutamate-tRNA ligase 99.7 3.3E-16 7.1E-21 170.6 16.7 254 30-323 218-514 (722)
91 PF00749 tRNA-synt_1c: tRNA sy 99.7 1.5E-16 3.2E-21 158.6 8.6 234 31-304 7-275 (314)
92 cd00808 GluRS_core catalytic c 99.7 2E-15 4.4E-20 143.7 15.7 190 31-317 7-208 (239)
93 TIGR00440 glnS glutaminyl-tRNA 99.7 8.8E-16 1.9E-20 160.1 14.3 247 31-322 6-306 (522)
94 PTZ00437 glutaminyl-tRNA synth 99.6 1.9E-15 4E-20 157.8 15.3 256 22-323 49-352 (574)
95 PLN02859 glutamine-tRNA ligase 99.6 2E-15 4.4E-20 162.4 13.4 271 7-321 248-564 (788)
96 KOG1149|consensus 99.5 3.9E-14 8.4E-19 140.3 11.5 246 31-321 39-331 (524)
97 KOG4426|consensus 99.5 3.4E-12 7.4E-17 126.4 25.1 330 20-400 185-652 (656)
98 KOG0437|consensus 99.4 3.4E-13 7.4E-18 140.8 10.3 138 228-369 663-817 (1080)
99 KOG1195|consensus 99.4 3.3E-11 7E-16 122.0 21.9 323 22-400 109-563 (567)
100 PF09190 DALR_2: DALR domain; 98.8 1E-08 2.2E-13 77.5 6.5 55 352-406 1-62 (63)
101 KOG1147|consensus 98.5 3.2E-07 6.9E-12 93.9 9.3 98 23-140 199-296 (712)
102 cd07955 Anticodon_Ia_Cys_like 98.3 1.8E-06 3.9E-11 68.6 7.5 78 314-398 1-81 (81)
103 smart00840 DALR_2 This DALR do 98.2 2.7E-06 5.8E-11 62.5 5.2 47 352-398 1-55 (56)
104 cd00395 Tyr_Trp_RS_core cataly 98.1 5.1E-06 1.1E-10 81.5 6.8 74 228-305 153-227 (273)
105 PRK13354 tyrosyl-tRNA syntheta 98.1 1.5E-05 3.3E-10 82.4 10.6 72 228-304 186-258 (410)
106 TIGR00233 trpS tryptophanyl-tR 98.1 7.1E-05 1.5E-09 75.4 14.6 77 220-303 131-217 (328)
107 PRK12285 tryptophanyl-tRNA syn 98.1 3E-05 6.5E-10 79.0 11.3 70 228-304 203-277 (368)
108 cd00806 TrpRS_core catalytic c 97.9 8E-05 1.7E-09 73.4 11.4 72 28-110 2-73 (280)
109 PRK05912 tyrosyl-tRNA syntheta 97.9 6.1E-05 1.3E-09 78.0 10.4 72 228-304 188-260 (408)
110 PRK08560 tyrosyl-tRNA syntheta 97.9 7.7E-05 1.7E-09 75.3 10.8 69 227-303 167-239 (329)
111 COG0180 TrpS Tryptophanyl-tRNA 97.9 8.9E-05 1.9E-09 73.2 10.9 192 26-287 6-212 (314)
112 PRK12282 tryptophanyl-tRNA syn 97.9 0.001 2.3E-08 67.0 18.5 81 27-119 4-85 (333)
113 PRK12284 tryptophanyl-tRNA syn 97.8 0.0017 3.6E-08 67.0 19.2 81 27-118 4-85 (431)
114 PTZ00126 tyrosyl-tRNA syntheta 97.8 0.00018 3.9E-09 73.7 11.3 90 24-122 65-155 (383)
115 cd07956 Anticodon_Ia_Arg Antic 97.7 0.00033 7.1E-09 62.9 11.3 91 291-382 2-115 (156)
116 PLN02486 aminoacyl-tRNA ligase 97.7 0.00042 9E-09 70.9 12.1 78 22-110 70-148 (383)
117 cd00805 TyrRS_core catalytic c 97.7 0.00016 3.5E-09 70.9 8.6 70 229-304 152-222 (269)
118 PF00579 tRNA-synt_1b: tRNA sy 97.6 4E-05 8.7E-10 76.1 2.6 69 228-303 149-223 (292)
119 KOG1148|consensus 97.4 0.00021 4.5E-09 74.5 6.2 89 31-138 254-342 (764)
120 COG0162 TyrS Tyrosyl-tRNA synt 97.4 0.00017 3.7E-09 73.9 4.6 54 228-284 180-234 (401)
121 PTZ00348 tyrosyl-tRNA syntheta 97.3 0.00059 1.3E-08 74.4 8.6 86 27-121 34-120 (682)
122 PRK12283 tryptophanyl-tRNA syn 97.3 0.00079 1.7E-08 68.7 8.9 71 27-110 4-75 (398)
123 PLN02886 aminoacyl-tRNA ligase 97.3 0.0053 1.1E-07 62.8 14.4 70 27-110 48-118 (389)
124 TIGR00234 tyrS tyrosyl-tRNA sy 96.9 0.0028 6.1E-08 65.1 8.3 38 26-67 31-69 (377)
125 PRK12556 tryptophanyl-tRNA syn 96.7 0.014 3.1E-07 58.8 10.9 67 220-287 141-215 (332)
126 cd07958 Anticodon_Ia_Leu_BEm A 96.5 0.015 3.4E-07 48.7 8.3 70 312-382 1-82 (117)
127 cd07959 Anticodon_Ia_Leu_AEc A 95.2 0.24 5.2E-06 41.4 10.3 70 312-382 1-80 (117)
128 PRK00927 tryptophanyl-tRNA syn 95.2 0.12 2.5E-06 52.4 9.6 71 27-110 3-73 (333)
129 cd07962 Anticodon_Ia_Val Antic 93.5 0.27 5.9E-06 42.6 7.0 70 312-382 1-88 (135)
130 PF05746 DALR_1: DALR anticodo 93.3 0.73 1.6E-05 38.8 9.3 78 322-400 3-115 (119)
131 KOG2007|consensus 92.5 0.22 4.7E-06 51.9 5.5 47 424-471 526-572 (586)
132 cd07957 Anticodon_Ia_Met Antic 91.4 0.89 1.9E-05 38.5 7.5 67 315-382 4-80 (129)
133 cd07375 Anticodon_Ia_like Anti 90.7 0.57 1.2E-05 38.7 5.5 35 347-382 49-83 (117)
134 cd07961 Anticodon_Ia_Ile_ABEc 85.5 4 8.7E-05 37.2 8.1 70 312-382 1-92 (183)
135 COG1656 Uncharacterized conser 85.4 3 6.5E-05 37.3 6.7 70 52-134 18-91 (165)
136 cd07960 Anticodon_Ia_Ile_BEm A 84.7 4.9 0.00011 36.6 8.2 70 312-382 1-90 (180)
137 PF01927 Mut7-C: Mut7-C RNAse 79.8 2.4 5.1E-05 37.5 4.0 66 52-130 12-81 (147)
138 PRK12556 tryptophanyl-tRNA syn 76.9 9.6 0.00021 38.6 7.8 83 26-119 4-87 (332)
139 smart00836 DALR_1 DALR anticod 76.2 10 0.00022 31.9 6.8 34 348-382 47-80 (122)
140 PF10009 DUF2252: Uncharacteri 75.6 12 0.00027 38.6 8.3 91 31-133 41-153 (385)
141 PRK00927 tryptophanyl-tRNA syn 74.2 4.8 0.0001 40.7 4.9 77 221-303 131-220 (333)
142 PF02151 UVR: UvrB/uvrC motif; 64.8 14 0.0003 24.3 3.9 30 425-454 3-32 (36)
143 PRK13671 hypothetical protein; 64.3 34 0.00074 34.0 8.3 87 34-127 8-113 (298)
144 KOG2713|consensus 62.4 24 0.00053 34.6 6.6 77 25-110 13-89 (347)
145 KOG2145|consensus 59.1 11 0.00024 36.9 3.7 48 21-73 81-129 (397)
146 KOG2144|consensus 57.5 6.4 0.00014 38.5 1.8 69 29-110 38-112 (360)
147 PF08264 Anticodon_1: Anticodo 57.5 21 0.00045 31.1 5.1 35 347-382 9-45 (153)
148 KOG1610|consensus 53.1 34 0.00074 34.1 6.1 69 36-105 176-251 (322)
149 PF02662 FlpD: Methyl-viologen 46.2 1.9E+02 0.0041 24.7 9.1 90 45-134 11-124 (124)
150 COG3286 Uncharacterized protei 40.7 44 0.00095 30.8 4.3 86 43-140 85-176 (204)
151 PRK09620 hypothetical protein; 40.0 48 0.0011 31.6 4.8 48 23-70 3-53 (229)
152 TIGR00640 acid_CoA_mut_C methy 38.9 74 0.0016 27.5 5.4 37 47-84 17-53 (132)
153 PF03033 Glyco_transf_28: Glyc 35.9 31 0.00068 29.2 2.6 26 40-68 9-34 (139)
154 PLN02413 choline-phosphate cyt 35.8 38 0.00081 33.4 3.3 40 21-69 24-63 (294)
155 cd02156 nt_trans nucleotidyl t 35.4 16 0.00034 30.0 0.6 23 30-59 4-26 (105)
156 TIGR01501 MthylAspMutase methy 33.5 1.7E+02 0.0037 25.4 6.8 74 33-135 8-81 (134)
157 PF04127 DFP: DNA / pantothena 32.8 45 0.00098 30.7 3.3 51 23-73 3-56 (185)
158 COG1838 FumA Tartrate dehydrat 32.0 1.6E+02 0.0034 27.0 6.4 60 23-83 54-116 (184)
159 KOG2804|consensus 31.7 22 0.00048 35.0 1.0 41 21-70 60-100 (348)
160 KOG2623|consensus 31.3 53 0.0012 33.7 3.6 45 27-75 65-112 (467)
161 cd02072 Glm_B12_BD B12 binding 31.1 2.1E+02 0.0046 24.6 6.9 66 47-135 14-79 (128)
162 PF13344 Hydrolase_6: Haloacid 30.5 2E+02 0.0044 23.3 6.5 37 35-73 6-43 (101)
163 PF14359 DUF4406: Domain of un 30.4 78 0.0017 25.5 3.9 33 27-64 1-33 (92)
164 PF10007 DUF2250: Uncharacteri 28.2 57 0.0012 26.4 2.7 42 98-139 12-54 (92)
165 PRK09875 putative hydrolase; P 28.1 1.3E+02 0.0028 29.9 5.7 14 99-112 169-182 (292)
166 KOG2713|consensus 26.9 84 0.0018 31.0 4.0 49 86-139 37-90 (347)
167 smart00576 BTP Bromodomain tra 26.0 95 0.0021 24.0 3.6 21 47-67 7-27 (77)
168 COG3340 PepE Peptidase E [Amin 25.9 4E+02 0.0087 25.2 8.1 88 27-139 4-91 (224)
169 TIGR03590 PseG pseudaminic aci 25.6 68 0.0015 31.4 3.3 41 40-86 14-55 (279)
170 KOG2805|consensus 25.4 73 0.0016 31.8 3.3 77 49-136 18-96 (377)
171 KOG0370|consensus 24.9 2.9E+02 0.0064 32.0 8.1 117 5-129 902-1066(1435)
172 PRK02261 methylaspartate mutas 24.6 2.9E+02 0.0063 23.9 6.8 35 47-82 18-52 (137)
173 cd02174 CCT CTP:phosphocholine 23.6 99 0.0022 27.3 3.7 27 24-58 2-28 (150)
174 PF10137 TIR-like: Predicted n 23.0 1.2E+02 0.0026 26.0 4.0 40 40-79 4-43 (125)
175 PF00392 GntR: Bacterial regul 22.4 3.1E+02 0.0068 19.9 6.0 53 93-150 4-63 (64)
176 COG3110 Uncharacterized protei 21.9 49 0.0011 30.7 1.3 17 266-282 30-46 (216)
177 cd02071 MM_CoA_mut_B12_BD meth 21.3 4E+02 0.0087 22.2 6.9 37 47-84 14-50 (122)
178 PHA02754 hypothetical protein; 20.9 1.1E+02 0.0024 22.4 2.7 23 439-461 13-36 (67)
179 PF06940 DUF1287: Domain of un 20.1 1E+02 0.0022 27.6 2.9 34 26-62 17-50 (164)
180 PRK13982 bifunctional SbtC-lik 20.0 1.6E+02 0.0034 31.5 4.8 50 23-72 256-308 (475)
No 1
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-135 Score=1024.02 Aligned_cols=453 Identities=51% Similarity=0.853 Sum_probs=412.3
Q ss_pred ceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHH
Q psy14486 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKK 82 (472)
Q Consensus 3 ~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~ 82 (472)
+|+||||+||+|++|.|.++++|+||+||||||+.+||||||++|++|+++|+|+.+||.|.||+||||+||||+++|.+
T Consensus 1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~ 80 (464)
T COG0215 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRARE 80 (464)
T ss_pred CcEEEecCccceecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCccc
Q psy14486 83 NNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLS 162 (472)
Q Consensus 83 ~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~ 162 (472)
+|.++.+++++|+++|.+||++|||.+++.+||+|+|+++|+++|++|+++|+||+.. +|+|||++++|++||+||
T Consensus 81 ~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~----~G~VYFdv~~f~~YG~LS 156 (464)
T COG0215 81 EGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVAD----DGDVYFDVSKFKDYGKLS 156 (464)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEec----CCcEEEecccchhhHhhc
Confidence 9999999999999999999999999988899999999999999999999999999986 689999999999999999
Q ss_pred CC-CccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcC
Q psy14486 163 GR-LISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKF 240 (472)
Q Consensus 163 ~~-~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~f 240 (472)
++ .+++++.| +++.+..|+||.||+|||.+++|+|. |+||||.||||||||||||+.++||.++|||+||.||+|
T Consensus 157 ~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~---W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiF 233 (464)
T COG0215 157 GRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPS---WDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF 233 (464)
T ss_pred CCCChhHHhhccccccccccCCchhheeeccCCCCCCC---CCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccC
Confidence 77 78999999 99998999999999999999999999 999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhccC-CCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHH
Q psy14486 241 PHHENEIAQSEGAYK-HKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNY 319 (472)
Q Consensus 241 pH~~~~~a~~~a~~g-~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~ 319 (472)
||||||+||++|++| ++|++||||+|||+++|+|||||+|||||++|++++|+|++|||+||++|||+|++||++.|++
T Consensus 234 PHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~ 313 (464)
T COG0215 234 PHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEE 313 (464)
T ss_pred CCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHH
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccccccCcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q psy14486 320 AKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS------IKMAKQLRGLG 393 (472)
Q Consensus 320 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~------~~~~~~l~~~~ 393 (472)
+.+.++|+++++.++.............++..+|.+||+||||||.|++.|+++++.+|+..+ ..++..+..+.
T Consensus 314 A~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (464)
T COG0215 314 AKKALERLYNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKSDAKAVLSALKALL 393 (464)
T ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHH
Confidence 999999999999976432111100012566778999999999999999999999999987654 33455666666
Q ss_pred hhhcc--cccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHHHHhHhCCcEEEecCCCeeeEEE
Q psy14486 394 NWLGL--LEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471 (472)
Q Consensus 394 ~ilGi--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~~Gi~v~D~~~g~t~w~~ 471 (472)
.+||+ +...+... .. . .+...++|++||++|.+||++|||++||+|||+|.++||.|+|||+| |+|++
T Consensus 394 ~~lg~~~l~~~~~~~-~~-~-------~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~Gi~leD~~~g-t~w~~ 463 (464)
T COG0215 394 AILGLKVLGLFPQSG-AQ-E-------DESDDEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPDG-TTWRR 463 (464)
T ss_pred HHhCchhhccccccc-cc-c-------ccchHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHCCcEEEECCCC-eEEEe
Confidence 77774 22211100 00 0 11145789999999999999999999999999999999999999999 99997
Q ss_pred C
Q psy14486 472 I 472 (472)
Q Consensus 472 ~ 472 (472)
.
T Consensus 464 ~ 464 (464)
T COG0215 464 K 464 (464)
T ss_pred C
Confidence 4
No 2
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.6e-125 Score=986.20 Aligned_cols=456 Identities=53% Similarity=0.915 Sum_probs=414.1
Q ss_pred ceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHH
Q psy14486 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKK 82 (472)
Q Consensus 3 ~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~ 82 (472)
||+||||+||++|+|.|.++++|+||+||||||+++||||+|++|.+|+++|+|++.||+|.||+|+|||||||+.+|++
T Consensus 227 ~l~lyNTltr~ke~f~P~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e 306 (699)
T PRK14535 227 MTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAE 306 (699)
T ss_pred ceEEEECCCCCeeccccCCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCccc
Q psy14486 83 NNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLS 162 (472)
Q Consensus 83 ~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~ 162 (472)
+|+++++++++|++.|.++|++|||.+|.++|++|+|++.|+++|++|+++|+||++. +|+||||+++|+.||+||
T Consensus 307 ~G~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~----~gsVYFdV~~f~~YG~LS 382 (699)
T PRK14535 307 NGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAA----NGDVYYAVREFAAYGQLS 382 (699)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeC----CCCEEEeccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999875 578999999999999999
Q ss_pred CCCccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCc
Q psy14486 163 GRLISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241 (472)
Q Consensus 163 ~~~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fp 241 (472)
+++++++..| +++.+.+|++|.||+|||.+++|+|. |+||||.||||||||||||+.++||.++|||+||+||+||
T Consensus 383 ~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~---W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFP 459 (699)
T PRK14535 383 GKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPA---WESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFP 459 (699)
T ss_pred CCChHHhcCCCccccccccCCccccceeccCCCCCCC---ccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCCC
Confidence 9999999989 89888889999999999999999998 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhccCC----------------CCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcC
Q psy14486 242 HHENEIAQSEGAYKH----------------KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSH 305 (472)
Q Consensus 242 H~~~~~a~~~a~~g~----------------~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~ 305 (472)
||+||+||++|++|. +|++||||+|||+++|+|||||+||+|+++|++++|+|+++|||++++|
T Consensus 460 HHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLssh 539 (699)
T PRK14535 460 HHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAH 539 (699)
T ss_pred CCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcCC
Confidence 999999999998876 4899999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHH
Q psy14486 306 YRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKM 385 (472)
Q Consensus 306 ~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~~~~ 385 (472)
|+++++||++.|+++.+.++|+++++.......... ......+.+.|.+||+||||||.|++.|+++++.+|+.....+
T Consensus 540 YRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~~~~~-~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~iN~~~~~~~ 618 (699)
T PRK14535 540 YRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFML-SENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQL 618 (699)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhccchh-hhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988753111100 0112457789999999999999999999999999998654445
Q ss_pred HHHHHHHHhhhcccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHHHHhHhCCcEEEecCCC
Q psy14486 386 AKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNG 465 (472)
Q Consensus 386 ~~~l~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~~Gi~v~D~~~g 465 (472)
...+..++.+||++..++.++...+.. ..+..+++|++||+.|++||++|||++||+||++|.++||.|+|||+|
T Consensus 619 ~~~l~~~~~vLGl~~~~~~~~~~~~~~-----~~~~~~~~i~~Li~~R~~AR~~Kdfa~AD~IRd~L~~~GI~veDt~~G 693 (699)
T PRK14535 619 AGCLKALGGIIGLLQRDPTEFLQGGAA-----SDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDNAGG 693 (699)
T ss_pred HHHHHHHHhhcCCCccchhhhhhcccc-----cccCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEEcCCC
Confidence 566778889999965332222211000 011124579999999999999999999999999999999999999999
Q ss_pred eeeEEEC
Q psy14486 466 KTEWRRI 472 (472)
Q Consensus 466 ~t~w~~~ 472 (472)
|+|++.
T Consensus 694 -t~W~~~ 699 (699)
T PRK14535 694 -TTWRRG 699 (699)
T ss_pred -ceEeeC
Confidence 999873
No 3
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=1.5e-125 Score=986.22 Aligned_cols=459 Identities=44% Similarity=0.779 Sum_probs=409.2
Q ss_pred eeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHc
Q psy14486 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN 83 (472)
Q Consensus 4 l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~ 83 (472)
|+||||+||+||+|.|.++++|+||+|||||||++||||+|++|.+|+++|+|++.||+|.||+|+|||||||+.+|+++
T Consensus 60 l~lyNTltr~ke~f~P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~ 139 (557)
T PLN02946 60 LHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANEL 139 (557)
T ss_pred eEEEECCCCCeeccccCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccC
Q psy14486 84 NESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSG 163 (472)
Q Consensus 84 g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~ 163 (472)
|+++++++++|++.|.++|++|||..++++|++|+|++.|+++|++|++||+||++ +|+||||+.+|+.||+||+
T Consensus 140 g~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~-----~g~VYFdv~~f~~YG~Ls~ 214 (557)
T PLN02946 140 GEDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRV-----DGDVYFSVDKFPEYGKLSG 214 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEE-----CCeEEEecCcchhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999998 6899999999999999999
Q ss_pred CCccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCch
Q psy14486 164 RLISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242 (472)
Q Consensus 164 ~~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH 242 (472)
++++++..| +++.+..|+||.||+|||.+++|+|. |+||||.||||||||||||+.++||.++|||+||+||+|||
T Consensus 215 ~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~---W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPH 291 (557)
T PLN02946 215 RKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPF---WDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPH 291 (557)
T ss_pred CChhHhhcCCCCCcccccCCccccceeccCCCCCCC---ccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCc
Confidence 999999999 89888899999999999999999998 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHHHHH
Q psy14486 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKK 322 (472)
Q Consensus 243 ~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~ 322 (472)
|+||+||++|+.|.++++||+|+|||+++|+|||||+||+|+++|++++|+|+++|||+|++||+++++||++.|.++.+
T Consensus 292 HENEiAQsea~~g~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~ 371 (557)
T PLN02946 292 HENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASE 371 (557)
T ss_pred ccchHHHHHHHhCCCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccc-c-------cccc----CcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH-------
Q psy14486 323 SLIRLYLAIKDIPKIN-Y-------KKII----DLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSI------- 383 (472)
Q Consensus 323 ~~~r~~~~~~~~~~~~-~-------~~~~----~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~~------- 383 (472)
.+.|+++++.++.... . .... .....+.+.|.+||+||||||.|++.|+++++.+|++++.
T Consensus 372 ~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~~~~~~~~ 451 (557)
T PLN02946 372 RIFYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHTRKGKKQE 451 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 9999888877652110 0 0000 1113567899999999999999999999999999987641
Q ss_pred ----H---HHHHHHHHHhhhcccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHHHHhHhCC
Q psy14486 384 ----K---MAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNG 456 (472)
Q Consensus 384 ----~---~~~~l~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~~G 456 (472)
. +...+..++.||||+............. ......+..+++|++||++|++||++|||++||+||++|.++|
T Consensus 452 ~~~~~l~~~~~~~~~~~~vLGl~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~IR~~L~~~G 530 (557)
T PLN02946 452 KRLESLAALEKKIRDVLSVLGLMPTSYSEALQQLRE-KALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVG 530 (557)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCchhhhhhhhhhhh-hhhhcccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCC
Confidence 1 1224556678999964311111110000 0000011123579999999999999999999999999999999
Q ss_pred cEEEecCCCeeeEEEC
Q psy14486 457 IILEDMPNGKTEWRRI 472 (472)
Q Consensus 457 i~v~D~~~g~t~w~~~ 472 (472)
|.|+|||+| |+|+++
T Consensus 531 i~l~Dt~~G-t~w~~~ 545 (557)
T PLN02946 531 IALMDSPDG-TTWRPA 545 (557)
T ss_pred CEEEECCCC-ceEEEc
Confidence 999999999 999874
No 4
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-122 Score=954.63 Aligned_cols=454 Identities=37% Similarity=0.576 Sum_probs=407.4
Q ss_pred CcceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcc--------
Q psy14486 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDI-------- 72 (472)
Q Consensus 1 ~~~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~-------- 72 (472)
|+ |+||||+||+||+|.|.++++|+||+||||||+++||||+|++|.+|+++|+|++.||+|.||+|+||+
T Consensus 1 m~-l~lyntlt~~ke~f~p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~D 79 (490)
T PRK14536 1 MA-LRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDAD 79 (490)
T ss_pred Cc-eEEEecCCCCeeccccCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCc
Confidence 66 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --cHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEE
Q psy14486 73 --DDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNY 150 (472)
Q Consensus 73 --d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f 150 (472)
||||+.+|+++|+++++++++|++.|.++|++|||.+|+++||+|+|++.|+++|++|+++|+||++ +++|||
T Consensus 80 e~ddKii~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~-----~~~vyF 154 (490)
T PRK14536 80 SGEDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCA-----GGNVYF 154 (490)
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEE-----CCeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 689999
Q ss_pred ecccccCcCcccCCCccccccC-CCCccccccCccccccccccC--CC-CCccccccCCCccCCCCCcchhhHhhhhhhC
Q psy14486 151 SVRNFLNYGKLSGRLISSNFNK-INEKNNFKKDPLDFALWKVSK--NN-DPYEIRWNSKWGAGRPGWHIECSAMSCYLLG 226 (472)
Q Consensus 151 ~~~~~~~yg~l~~~~~~~~~~g-~v~~~~~k~~~~df~lwk~~~--~g-~~~~~~w~~~wG~g~PgWhiecsam~~~~~g 226 (472)
|+.+|+.||+||+++++++..| +++.+..|+||.||+|||..+ ++ ++. |+||||.||||||||||||+.++||
T Consensus 155 dv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~---W~SpWG~GRPGWHIECsaMs~~~lg 231 (490)
T PRK14536 155 DIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALT---WDSPWGRGYPGWHIECSAMSMKYLG 231 (490)
T ss_pred eCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCc---ccCCCCCCCCChHHHHHHHHHHHcC
Confidence 9999999999999999999989 888888899999999999754 33 356 9999999999999999999999999
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhh-CChhhHHHHhhhcC
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK-YNPEVIRFFILRSH 305 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~ 305 (472)
.++|||+||+||+||||+||+||++|++|.+|+++|+|+|||+++|+|||||+||+|+++|+++. |+|+++||+++++|
T Consensus 232 ~~~DIH~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~ 311 (490)
T PRK14536 232 EQCDIHIGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGH 311 (490)
T ss_pred CceeEEeccccCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHhcCccc--c---------cc------c-cCc-chhHHHHHHHHHHhccChhHH
Q psy14486 306 YRSTINYSEIYLNYAKKSLIRLYLAIKDIPKIN--Y---------KK------I-IDL-NEPHAKRFIIAMNDDFNTPVA 366 (472)
Q Consensus 306 ~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~~~--~---------~~------~-~~~-~~~~~~~~~~al~dd~n~~~a 366 (472)
|+++++||++.|.++.+.+.|+.+++.++.... + .. . ... ...+.++|.+||+||||||.|
T Consensus 312 yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~A 391 (490)
T PRK14536 312 YRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKA 391 (490)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHH
Confidence 999999999999999999999999887652110 0 00 0 001 135678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHh
Q psy14486 367 ISILFDLANIINKNKSIKMAKQLRGLGNWLGLLE-YSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEA 445 (472)
Q Consensus 367 l~~l~~l~~~~N~~~~~~~~~~l~~~~~ilGi~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~a 445 (472)
++.|+++++.+|+.. ..+...++.+..+|||.. ........... .....+++|++||+.|++||++|||++|
T Consensus 392 l~~l~~~~~~~n~~~-~~~~~~~~~~~~vLGl~~~~~~~~~~~~~~------~~~~~~~~i~~li~~R~~aR~~kdf~~A 464 (490)
T PRK14536 392 LSELQKLVKDTSVPP-SLCLSVLQAMDTVLGLGLIQEATASLSAQV------PAGPSEEEIGQLIEARAHARQTKDFPLA 464 (490)
T ss_pred HHHHHHHHHHhhhhH-HHHHHHHHHHHhhcCcccccchhhhhhhcc------cccCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999632 335567788889999952 11111110000 0111235699999999999999999999
Q ss_pred HHHHHHhHhCCcEEEecCCCeeeEEE
Q psy14486 446 DKIRQELVNNGIILEDMPNGKTEWRR 471 (472)
Q Consensus 446 D~iRd~L~~~Gi~v~D~~~g~t~w~~ 471 (472)
|+||++|.++||.|+|||+| |+|++
T Consensus 465 D~iR~~L~~~Gi~l~Dt~~G-t~w~~ 489 (490)
T PRK14536 465 DEIRDKLKAEGIELEDTHLG-TIWKR 489 (490)
T ss_pred HHHHHHHHHCCCEEEEcCCC-ceEEe
Confidence 99999999999999999999 99986
No 5
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-120 Score=933.23 Aligned_cols=450 Identities=31% Similarity=0.513 Sum_probs=400.0
Q ss_pred CcceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcc--------
Q psy14486 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDI-------- 72 (472)
Q Consensus 1 ~~~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~-------- 72 (472)
|+ |+||||+||++|+|.|. ++|+||+||||||+++||||+|++|.+|+++|+|+++||+|.||+||||+
T Consensus 1 ~~-l~lynTltr~ke~f~p~--~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D 77 (481)
T PRK14534 1 ML-LKLYNTKTKDLSELKNF--SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFD 77 (481)
T ss_pred Cc-eEEEEcCCCCeeecccC--CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCcc
Confidence 67 99999999999999996 69999999999999999999999999999999999999999999999999
Q ss_pred --cHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEE
Q psy14486 73 --DDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNY 150 (472)
Q Consensus 73 --d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f 150 (472)
||||+.+|+++|+++++++++|++.|++++++|||.+|.++|++|+|++.|+++|++|+++|+||++ +++|||
T Consensus 78 ~gddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~-----~~~vyF 152 (481)
T PRK14534 78 DGEDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFV-----NGNVYF 152 (481)
T ss_pred CCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEE-----CCeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 689999
Q ss_pred ecccccCcCcccCCCccccc--cC-CCCccccccCcccccccccc---CCCCCccccccCCCccCCCCCcchhhHhhhhh
Q psy14486 151 SVRNFLNYGKLSGRLISSNF--NK-INEKNNFKKDPLDFALWKVS---KNNDPYEIRWNSKWGAGRPGWHIECSAMSCYL 224 (472)
Q Consensus 151 ~~~~~~~yg~l~~~~~~~~~--~g-~v~~~~~k~~~~df~lwk~~---~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~ 224 (472)
|+.+|+.||+||+++++++. .| +++.+..|+||.||+|||.. +++++. |+||||.||||||||||||+.++
T Consensus 153 dv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~---w~spWG~GrPgWHiECsam~~~~ 229 (481)
T PRK14534 153 DTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMK---WDSPWGFGYPSWHLECAAMNLEY 229 (481)
T ss_pred ecccccchhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCe---ecCCCCCcCCcHHHHHHHHHHHH
Confidence 99999999999999999987 67 88888889999999999974 788887 99999999999999999999999
Q ss_pred hCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhh-CChhhHHHHhhh
Q psy14486 225 LGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK-YNPEVIRFFILR 303 (472)
Q Consensus 225 ~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~ 303 (472)
||.++|||+||+||+||||+||+||++|+.|.+++++|||+|||+++|+|||||+||+++++|++++ ++|+++||++++
T Consensus 230 lg~~~DIH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls 309 (481)
T PRK14534 230 FKSTLDIHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLT 309 (481)
T ss_pred cCCcceEEecccccCCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 999999999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHHhc----Cc-----ccccccc---CcchhHHHHHHHHHHhccChhHHHHHHH
Q psy14486 304 SHYRSTINYSEIYLNYAKKSLIRLYLAIKDI----PK-----INYKKII---DLNEPHAKRFIIAMNDDFNTPVAISILF 371 (472)
Q Consensus 304 ~~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~----~~-----~~~~~~~---~~~~~~~~~~~~al~dd~n~~~al~~l~ 371 (472)
+||++|++||++.|+++.+.++|+++.+.++ .. ....... .....+.++|.+||+||||||.|++.|+
T Consensus 310 ~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~ 389 (481)
T PRK14534 310 AHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLW 389 (481)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 9999999999999999999999998877644 11 0000000 0113566899999999999999999999
Q ss_pred HHHHHHHHH-HHH-HHHHHHHHHHhhhcccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHH
Q psy14486 372 DLANIINKN-KSI-KMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIR 449 (472)
Q Consensus 372 ~l~~~~N~~-~~~-~~~~~l~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iR 449 (472)
++++.+|+. ... .+...+..+.. ||+....... +.. .....+++|++||++|++||++|||++||+||
T Consensus 390 ~~~k~~n~~~~~~~~~~~~~~~~~~-lg~~~~~~~~-~~~--------~~~~~~~~i~~li~~R~~aR~~Kd~~~AD~iR 459 (481)
T PRK14534 390 DIIKDDNLSFLSKLRLAFKFDEVLS-LGLREEILRE-IEN--------HRIVIDDNMKSLIEERRLAKCEKDFKRADEIR 459 (481)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh-CCCCcccchh-hcc--------ccccCHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999975 221 12333444554 7773210110 000 01113457999999999999999999999999
Q ss_pred HHhHhCCcEEEecCCCeeeEEEC
Q psy14486 450 QELVNNGIILEDMPNGKTEWRRI 472 (472)
Q Consensus 450 d~L~~~Gi~v~D~~~g~t~w~~~ 472 (472)
++|.++||.|+|||+| |+|++.
T Consensus 460 ~~L~~~Gi~l~Dt~~G-t~w~~~ 481 (481)
T PRK14534 460 EYFASKGFVLIDTEEG-TKVKRG 481 (481)
T ss_pred HHHHHCCCEEEEcCCC-CEEEeC
Confidence 9999999999999999 999874
No 6
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.6e-117 Score=924.59 Aligned_cols=454 Identities=54% Similarity=0.895 Sum_probs=412.9
Q ss_pred CcceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHH
Q psy14486 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACA 80 (472)
Q Consensus 1 ~~~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a 80 (472)
|+ |+||||+||++++|.|..+++|+||+|||||||++||||+|++|.+|+++|+||++||+|.|++|+||+|+||+.+|
T Consensus 1 ~~-l~~~ntl~~~~~~f~p~~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A 79 (463)
T PRK00260 1 MM-LKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRA 79 (463)
T ss_pred Cc-eEEEECCCCceeecccCCCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHH
Confidence 55 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCc
Q psy14486 81 KKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGK 160 (472)
Q Consensus 81 ~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~ 160 (472)
+++|++|++++++|++.|.++|++|||..+++++++|+|++.+++++++|+++|+||++ +++||||++++++||+
T Consensus 80 ~~~g~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~-----~~~Vyfdv~~~~~yg~ 154 (463)
T PRK00260 80 NEEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEA-----DGDVYFDVRKFPDYGK 154 (463)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEe-----cCeEEEeccccccccc
Confidence 99999999999999999999999999977777799999999999999999999999998 6999999999999999
Q ss_pred ccCCCccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCc
Q psy14486 161 LSGRLISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239 (472)
Q Consensus 161 l~~~~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~ 239 (472)
||+++++++..| +++.+.+|++|.||+|||.+++|++. |+||||.||||||||||||+.++||.++|||+||+||+
T Consensus 155 ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~---w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~Dli 231 (463)
T PRK00260 155 LSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPS---WESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLI 231 (463)
T ss_pred CCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCC---CCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccC
Confidence 999999999888 88888889999999999999999998 99999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHH
Q psy14486 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNY 319 (472)
Q Consensus 240 fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~ 319 (472)
||||+|++||++|++|.||+++|+|+|||+++|+|||||+||+|+++|++++|+||++||++++++|+++++|+++.+.+
T Consensus 232 fpHh~neiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~ 311 (463)
T PRK00260 232 FPHHENEIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQ 311 (463)
T ss_pred CCchHhHHHHHHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccccccc-CcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q psy14486 320 AKKSLIRLYLAIKDIPKINYKKII-DLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS-------IKMAKQLRG 391 (472)
Q Consensus 320 ~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~-------~~~~~~l~~ 391 (472)
+.+.++|++++++.+.....+.+. .....+.++|.+||+||||+|.|++.|+++++.+|++++ ..+...|..
T Consensus 312 a~~~~~rl~~~~~~~~~~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~~~~~~~~~~~~~~~~ 391 (463)
T PRK00260 312 AKKALERLYNALAETALGEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALETKDKEAAAALAALLRA 391 (463)
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 999999999999876421111111 112467789999999999999999999999999999874 224456777
Q ss_pred HHhhhcccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHHHHhHhCCcEEEecCCCeeeEEE
Q psy14486 392 LGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471 (472)
Q Consensus 392 ~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~~Gi~v~D~~~g~t~w~~ 471 (472)
++.+||+.......... . .....++++++|+++|++||++|||++||+||++|.++||.|+|+|+| |+|++
T Consensus 392 ~~~ilG~~~~~~~~~~~--~------~~~~~~~~~~~li~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~v~D~~~G-~~w~~ 462 (463)
T PRK00260 392 LADVLGLEQDEEALFEA--A------ADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDTPDG-TTWRR 462 (463)
T ss_pred HHHhcCCCchhhhhhhc--c------cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEcCCC-ceEEe
Confidence 88899995321110000 0 011134679999999999999999999999999999999999999999 99997
Q ss_pred C
Q psy14486 472 I 472 (472)
Q Consensus 472 ~ 472 (472)
+
T Consensus 463 ~ 463 (463)
T PRK00260 463 K 463 (463)
T ss_pred C
Confidence 4
No 7
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=2.9e-117 Score=923.14 Aligned_cols=452 Identities=49% Similarity=0.836 Sum_probs=408.8
Q ss_pred eeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHc
Q psy14486 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN 83 (472)
Q Consensus 4 l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~ 83 (472)
|+||||+||+||+|.|..+++|+||+|||||||++||||+|++|.+|+++|+||++||+|.||+|+||||+||+.+|+++
T Consensus 1 l~lyntlt~~~e~f~p~~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~ 80 (465)
T TIGR00435 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAREN 80 (465)
T ss_pred CeeEeCCCCCeeccccCCCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccC-CcEEEecccccCcCccc
Q psy14486 84 NESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKIN-GDVNYSVRNFLNYGKLS 162 (472)
Q Consensus 84 g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~-g~v~f~~~~~~~yg~l~ 162 (472)
|++|++++++|.+.|.++|++|||.+|.+++++|+|++.|+++|++|+++|+||+. + |+||||+.+++.||+||
T Consensus 81 g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~-----~~g~vyfdv~~~~~yG~ls 155 (465)
T TIGR00435 81 GESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVS-----DNGDVYFDVSKFKDYGKLS 155 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEe-----cCCcEEEeccccchhccCC
Confidence 99999999999999999999999999998899999999999999999999999998 5 89999999999999999
Q ss_pred CCCccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCc
Q psy14486 163 GRLISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241 (472)
Q Consensus 163 ~~~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fp 241 (472)
+++++++..| +++.+.+|+||.||+|||++++|++. |+||||.||||||||||||+.++||.++|||+||+||+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~---w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fp 232 (465)
T TIGR00435 156 KQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPK---WDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFP 232 (465)
T ss_pred CCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCC---CcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccc
Confidence 9999999888 88888889999999999999999998 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHHHH
Q psy14486 242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAK 321 (472)
Q Consensus 242 H~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~ 321 (472)
||+|++||++|++|.+++++|+|+|||+++|+|||||+||+|+++|++++|+|+++|||++++||+++++||++.++++.
T Consensus 233 Hhene~aqs~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~ 312 (465)
T TIGR00435 233 HHENEIAQSEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAK 312 (465)
T ss_pred hHHHHHHHHHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcc-ccc-ccc---C-cchhHHHHHHHHHHhccChhHHHHHHHHHHHHHH-HHHH----HHHHHHHH
Q psy14486 322 KSLIRLYLAIKDIPKI-NYK-KII---D-LNEPHAKRFIIAMNDDFNTPVAISILFDLANIIN-KNKS----IKMAKQLR 390 (472)
Q Consensus 322 ~~~~r~~~~~~~~~~~-~~~-~~~---~-~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N-~~~~----~~~~~~l~ 390 (472)
+.++|++++++.+... ... ... . ....+.+.|.+||+||||||.|++.|+++++.+| ..++ ..+...+.
T Consensus 313 ~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~~~~~~~~~~~~ 392 (465)
T TIGR00435 313 NALERLYKALRVLDTTLAYSGNQSLNKFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSINLTFVSKADAALLIEHLI 392 (465)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH
Confidence 9999999999876321 110 000 1 1245678999999999999999999999999999 4332 23445677
Q ss_pred HHHhhhcccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHHHHhHhCCcEEEecCCCeeeEE
Q psy14486 391 GLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWR 470 (472)
Q Consensus 391 ~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~~Gi~v~D~~~g~t~w~ 470 (472)
.+..+||++......+...+. .+.....|++||+.|++||++|||++||+||++|.++||.|+|||+| |+|+
T Consensus 393 ~l~~~lg~~~~~~~~~~~~~~-------~~~~~~~i~~l~~~R~~ar~~k~~~~aD~iR~~L~~~Gi~~~D~~~g-t~w~ 464 (465)
T TIGR00435 393 FLESRLGLLLGLPSKPVQAGS-------NDDELGEIEALIEERSIARKEKDFAKADEIRDELLKKGIVLEDTPQG-TTWR 464 (465)
T ss_pred HHHHhcccCccccchhccccc-------ccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEECCCC-ceee
Confidence 888899996321100111000 00012468999999999999999999999999999999999999999 9997
Q ss_pred E
Q psy14486 471 R 471 (472)
Q Consensus 471 ~ 471 (472)
+
T Consensus 465 ~ 465 (465)
T TIGR00435 465 R 465 (465)
T ss_pred C
Confidence 4
No 8
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=6.4e-113 Score=916.51 Aligned_cols=456 Identities=38% Similarity=0.602 Sum_probs=400.1
Q ss_pred ceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHH-HCCCceEEecCCCcccHHHHHHHH
Q psy14486 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLR-INNYDVTYVRNITDIDDKIIACAK 81 (472)
Q Consensus 3 ~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~-~~G~~v~~v~~~dD~d~ki~~~a~ 81 (472)
+|+|||||||+|++|.|.++++|+||+||||||+++||||||++|++|+++|+|+ +.||+|.||+|+|||||||+.+|+
T Consensus 39 ~l~lyNtlt~~k~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~ 118 (651)
T PTZ00399 39 GLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAR 118 (651)
T ss_pred ceEEEECCCCCccccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred HcCCC-HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccccc----
Q psy14486 82 KNNES-IKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFL---- 156 (472)
Q Consensus 82 ~~g~~-~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~---- 156 (472)
++|++ +.+++++|++.|.++|++|||.+|+++||+|+|++.|+++|++|+++|+||+. +|+|||++++|+
T Consensus 119 ~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~-----~gsvyFd~~~f~~~~~ 193 (651)
T PTZ00399 119 EEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYES-----NGSVYFDVEAFRKAGH 193 (651)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEE-----CCeEEEEchhcccchh
Confidence 99999 99999999999999999999999999999999999999999999999999987 699999999997
Q ss_pred CcCcccC---CCccccccC-C-C-CccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCce
Q psy14486 157 NYGKLSG---RLISSNFNK-I-N-EKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFD 230 (472)
Q Consensus 157 ~yg~l~~---~~~~~~~~g-~-v-~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~d 230 (472)
.||+|++ .+.+.+..| + + +....|++|.||+|||.+++|+|. |+||||.||||||||||||+..+||.++|
T Consensus 194 ~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~---W~SpwG~GrPGWHiECsam~~~~lg~~~D 270 (651)
T PTZ00399 194 VYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPS---WDSPWGKGRPGWHIECSAMASNILGDPID 270 (651)
T ss_pred hHHhhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCC---CCCCCCCCCCCchHHHHHHHHHHcCCcce
Confidence 8999985 445566666 4 6 344579999999999999999999 99999999999999999999999999999
Q ss_pred EeeeccCCcCchhHHHHHHHhhccCC-CCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCC
Q psy14486 231 IHGGGQDLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRST 309 (472)
Q Consensus 231 ih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~ 309 (472)
||+||+||+||||+||+||++|++|. +|+++|+|+|||+++|+|||||+||+|+|+|++++|++|++|||||+++|+++
T Consensus 271 Ih~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~d 350 (651)
T PTZ00399 271 IHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKP 350 (651)
T ss_pred eeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCC
Confidence 99999999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHhcCcc-----ccc----cccC-----cchhHHHHHHHHHHhccChhHHHHHHHHHHH
Q psy14486 310 INYSEIYLNYAKKSLIRLYLAIKDIPKI-----NYK----KIID-----LNEPHAKRFIIAMNDDFNTPVAISILFDLAN 375 (472)
Q Consensus 310 ~~fs~~~l~~~~~~~~r~~~~~~~~~~~-----~~~----~~~~-----~~~~~~~~~~~al~dd~n~~~al~~l~~l~~ 375 (472)
++||++.+.++.+..+++.+++.++... .+. ...+ ....+...|.+||+||||++.|++.|++|++
T Consensus 351 ldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~ 430 (651)
T PTZ00399 351 MNYSDESMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLIS 430 (651)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999888887776664211 000 0011 0145778899999899999999999999999
Q ss_pred HHHHHHH----------HHHHHHHHHHHhhhcccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHh----c--
Q psy14486 376 IINKNKS----------IKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARK----R-- 439 (472)
Q Consensus 376 ~~N~~~~----------~~~~~~l~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~----~-- 439 (472)
.+|+|++ ..+...|..++.||||...+.........+ ..+...+.|+.|+++|+++|+ +
T Consensus 431 ~~N~yi~~~~~~~~~ll~~v~~~l~~~l~ILGl~~~~~m~~~~~~~~-----~~~~~~~~i~~l~~~R~~~R~~a~~~~~ 505 (651)
T PTZ00399 431 ATNTYLNSGEQPSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQGQNS-----TSENFKPLLEALLRFRDEVRDAAKAEMK 505 (651)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHhcccCCcchhhcccccccc-----chhhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999985 123456777888999954321000000000 011123569999999999994 5
Q ss_pred ---------CChHHhHHHHH-HhHhCCcEEEecCCCeeeEEE
Q psy14486 440 ---------KNFLEADKIRQ-ELVNNGIILEDMPNGKTEWRR 471 (472)
Q Consensus 440 ---------Kdf~~aD~iRd-~L~~~Gi~v~D~~~g~t~w~~ 471 (472)
|+|++||+||| +|.++||.|+|+++|+|+|++
T Consensus 506 ~~~~~~~~~~~~~~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~ 547 (651)
T PTZ00399 506 LISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKL 547 (651)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHCCCEEEEcCCCceEEEE
Confidence 88999999999 599999999999999558986
No 9
>KOG2007|consensus
Probab=100.00 E-value=1.2e-111 Score=837.27 Aligned_cols=448 Identities=39% Similarity=0.647 Sum_probs=388.3
Q ss_pred ceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHH-HCCCceEEecCCCcccHHHHHHHH
Q psy14486 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLR-INNYDVTYVRNITDIDDKIIACAK 81 (472)
Q Consensus 3 ~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~-~~G~~v~~v~~~dD~d~ki~~~a~ 81 (472)
.|+||||+||+||+|.|.++++|+||+||||||+..||||||+||.+|+|+|+|+ +.||+|.||+||||+|||||.||+
T Consensus 34 ~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr 113 (586)
T KOG2007|consen 34 ELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRAR 113 (586)
T ss_pred eEEEeeccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhh
Confidence 4999999999999999999999999999999999999999999999999999999 779999999999999999999998
Q ss_pred -----HcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccccc
Q psy14486 82 -----KNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFL 156 (472)
Q Consensus 82 -----~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~ 156 (472)
+.+.+..+.-..|+++|.+||.+|||.+|++.+|+|+|+++|+.+|++++++|++|.. +|+||||+.+|+
T Consensus 114 ~~~m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~-----dGsVYFdv~kf~ 188 (586)
T KOG2007|consen 114 KEEMGEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAV-----DGSVYFDVDKFP 188 (586)
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeee-----CCcEEEeccccc
Confidence 2333444443468899999999999999999999999999999999999999999998 799999999999
Q ss_pred C-cCcccCCCccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeee
Q psy14486 157 N-YGKLSGRLISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGG 234 (472)
Q Consensus 157 ~-yg~l~~~~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~ 234 (472)
. ||+|+|.. +.+.+| .+..+..|++|.||+|||++|+|||. |+||||.||||||||||||+..+||..+|||+|
T Consensus 189 ~~YgKL~G~~-~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~---WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~G 264 (586)
T KOG2007|consen 189 HSYGKLVGQR-KNLQEGEGVLSDSRKRSPADFALWKASKPGEPS---WESPWGKGRPGWHIECSAMASAILGSQLDIHGG 264 (586)
T ss_pred chhhhhcCch-hhcccCcCccccccCCChhhhhhhhhcCCCCCC---CCCCCCCCCCCceeeeHHHHHHhhccccceecC
Confidence 5 99999765 666667 55557889999999999999999999 999999999999999999999999999999999
Q ss_pred ccCCcCchhHHHHHHHhhccC-CCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccC
Q psy14486 235 GQDLKFPHHENEIAQSEGAYK-HKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYS 313 (472)
Q Consensus 235 G~Dl~fpH~~~~~a~~~a~~g-~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs 313 (472)
|+||.||||+||+||++|++. .+|++||+|+|||+++|+|||||++||||++|+|++|+|+++|++||+++|+++++||
T Consensus 265 G~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs 344 (586)
T KOG2007|consen 265 GIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYS 344 (586)
T ss_pred cccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCch
Confidence 999999999999999999986 5699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc----ccc-cccc--Cc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Q psy14486 314 EIYLNYAKKSLIRLYLAIKDIPK----INY-KKII--DL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNK 381 (472)
Q Consensus 314 ~~~l~~~~~~~~r~~~~~~~~~~----~~~-~~~~--~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~ 381 (472)
...|+.+.+....+.+++..+.. ..+ +... +. .....++|..|++|+++|+.++..+.+++..+|.|+
T Consensus 345 ~s~m~~a~q~e~~~~~ff~~~~al~~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i 424 (586)
T KOG2007|consen 345 DSTMEQALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYI 424 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHH
Confidence 99999998877777666644321 111 1110 10 135678899999999999999999999999999998
Q ss_pred H-----------HHHHHHHHHHHhhhcccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhc-------CChH
Q psy14486 382 S-----------IKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKR-------KNFL 443 (472)
Q Consensus 382 ~-----------~~~~~~l~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~-------Kdf~ 443 (472)
. ......+..++.+||+......+.. . .......++.|+++|...|+- .-++
T Consensus 425 ~~~~~~~~~~~L~~I~~yIt~~l~ifG~~e~~g~q~~-~---------e~~~m~~v~~L~~fr~~vRe~a~~~~~~~iL~ 494 (586)
T KOG2007|consen 425 RESGERPNSALLKAIASYITKLLKIFGLSEGKGQQYV-L---------EATVMPYVQSLSEFREKVREVAREKKVPEILE 494 (586)
T ss_pred HHhccccchHHHHHHHHHHHHHHHHhCCCcccccccc-c---------ccchhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 5 1223567778888998752111100 0 011235789999999999863 2389
Q ss_pred HhHHHHHH-hHhCCcEEEecCCCeeeEEE
Q psy14486 444 EADKIRQE-LVNNGIILEDMPNGKTEWRR 471 (472)
Q Consensus 444 ~aD~iRd~-L~~~Gi~v~D~~~g~t~w~~ 471 (472)
+||.|||. |++.|+.++|.+ | ++|.+
T Consensus 495 l~d~lR~~~l~~~g~~led~~-g-~~lvk 521 (586)
T KOG2007|consen 495 LCDTLRDSDLLELGVRLEDRK-G-STLVK 521 (586)
T ss_pred HhHHHHHhhHHHhhhHHHhCC-c-hHHHH
Confidence 99999987 999999999999 8 66653
No 10
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=2e-106 Score=816.01 Aligned_cols=380 Identities=32% Similarity=0.558 Sum_probs=349.1
Q ss_pred ceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHH
Q psy14486 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKK 82 (472)
Q Consensus 3 ~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~ 82 (472)
+|+|||||||++|+|.| +++|+||+||||||+++||||+|++|.+|+++|+||+.||+|.||+|+|||||||+.+|++
T Consensus 17 ~l~lyntlt~~~~~f~p--~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~ 94 (411)
T TIGR03447 17 PLRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAER 94 (411)
T ss_pred ceEEEECCCCCeeeccC--CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHH
Confidence 59999999999999999 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCC---cEEEecccccCcC
Q psy14486 83 NNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKING---DVNYSVRNFLNYG 159 (472)
Q Consensus 83 ~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g---~v~f~~~~~~~yg 159 (472)
+|+++++++++|+++|.+++++|||..++.++|+|+|++.|+++|++|+++|+||++. +| +|||++++++.||
T Consensus 95 ~g~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~----~~~~~~VYFdv~~~~~YG 170 (411)
T TIGR03447 95 DGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVE----GPEYPDVYFSIEATEQFG 170 (411)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecC----CCCcCcEEEeccchhccc
Confidence 9999999999999999999999999877777999999999999999999999999874 22 8999999999999
Q ss_pred cccCCCcccccc--C-C-CCccc-cccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeee
Q psy14486 160 KLSGRLISSNFN--K-I-NEKNN-FKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGG 234 (472)
Q Consensus 160 ~l~~~~~~~~~~--g-~-v~~~~-~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~ 234 (472)
+||+++++++.. + + ++.+. .|+||.||+|||.+++|+|. |+||||.||||||||||||+.++||.++|||+|
T Consensus 171 ~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~---w~spwG~GRPGWHiECsam~~~~lg~~~Dih~G 247 (411)
T TIGR03447 171 YESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPS---WDSPFGPGRPGWHIECSAIATNRLGAGFDIQGG 247 (411)
T ss_pred cccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCC---ccCCCCCCCChhHHHHHHHHHHHcCCceecccC
Confidence 999999998876 4 4 66644 69999999999999999998 999999999999999999999999999999999
Q ss_pred ccCCcCchhHHHHHHHhhccCC-CCceEEEeeeeEEecCccccccCCCccCHHHHHhh-CChhhHHHHhhhcCCCCCccc
Q psy14486 235 GQDLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK-YNPEVIRFFILRSHYRSTINY 312 (472)
Q Consensus 235 G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~f 312 (472)
|.||+||||+|++||++|++|. ||+++|+|+|+|+++|+|||||+||+|+++|+++. ++|+++|||++++||++|++|
T Consensus 248 G~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~f 327 (411)
T TIGR03447 248 GSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDW 327 (411)
T ss_pred cccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCcc
Confidence 9999999999999999999987 99999999999999999999999999999999986 999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy14486 313 SEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS---IKMAKQL 389 (472)
Q Consensus 313 s~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~---~~~~~~l 389 (472)
|++.|+++.+.++|+.+++.+... + ....+..+|.+||+||||||+|++.|+++++.+|.--. .+.+...
T Consensus 328 s~e~l~~a~~~l~rl~~~~~~~~~--~-----~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n~~~~~~~~~~~~~~ 400 (411)
T TIGR03447 328 TDAVLAEAEARLARWRAALAATDA--P-----DATDLIARLRQHLANDLDTPAALAAVDNWAAAALSSGGSDSEAPALVA 400 (411)
T ss_pred CHHHHHHHHHHHHHHHHHHhhccc--c-----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCCccchHHHH
Confidence 999999999999999999976521 1 11356688999999999999999999999999997432 2223344
Q ss_pred HHHHhhhcc
Q psy14486 390 RGLGNWLGL 398 (472)
Q Consensus 390 ~~~~~ilGi 398 (472)
+.+..+||+
T Consensus 401 ~~~~~~~~~ 409 (411)
T TIGR03447 401 TAVDALLGV 409 (411)
T ss_pred HHHHHHhCc
Confidence 555666776
No 11
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-101 Score=777.32 Aligned_cols=366 Identities=36% Similarity=0.589 Sum_probs=336.7
Q ss_pred ccCCCC-ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy14486 18 YPITPG-KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIK 96 (472)
Q Consensus 18 ~p~~~~-~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~ 96 (472)
.|..|| +|+||+||||||+++||||+|++|.+|+++|+||++||+|.||+|+|||||||+.+|+++|+++++++++|++
T Consensus 2 ~p~~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~ 81 (384)
T PRK12418 2 RPVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIA 81 (384)
T ss_pred cCCCCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 477788 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCC----cEEEecccccCcCcccCCCcccccc-
Q psy14486 97 AAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKING----DVNYSVRNFLNYGKLSGRLISSNFN- 171 (472)
Q Consensus 97 ~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g----~v~f~~~~~~~yg~l~~~~~~~~~~- 171 (472)
.|.+++++|||..++.+||+|+|++.|+++|++|+++|+||++. + +|||++.+++.||+||+++++++..
T Consensus 82 ~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~-----~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~ 156 (384)
T PRK12418 82 LFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVD-----DEEYPDVYFSVDATPQFGYESGYDRATMLEL 156 (384)
T ss_pred HHHHHHHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeC-----CCCCccEEEecCchhhcccccCCCHHHHHhh
Confidence 99999999999766777999999999999999999999999984 5 8999999999999999999998876
Q ss_pred -C-C-CCcc-ccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHH
Q psy14486 172 -K-I-NEKN-NFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEI 247 (472)
Q Consensus 172 -g-~-v~~~-~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~ 247 (472)
+ + ++.+ +.|+||.||+|||.+++|+|. |+||||.||||||||||||+.++||.++|||+||.||+||||+||+
T Consensus 157 ~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~---w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHenei 233 (384)
T PRK12418 157 FAERGGDPDRPGKRDPLDALLWRAARPGEPS---WPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSA 233 (384)
T ss_pred hcccccCcccccCCCcccceeeccCCCCCCc---ccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHH
Confidence 4 5 4553 469999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCC-CCceEEEeeeeEEecCccccccCCCccCHHHHHhh-CChhhHHHHhhhcCCCCCcccCHHHHHHHHHHHH
Q psy14486 248 AQSEGAYKH-KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK-YNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLI 325 (472)
Q Consensus 248 a~~~a~~g~-~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~~~ 325 (472)
||++|++|. ||+++|+|+|+|.++|+|||||+||+|++.++++. ++|+++|||+++++|+++++||++.++++.+.++
T Consensus 234 aq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~ 313 (384)
T PRK12418 234 AHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLA 313 (384)
T ss_pred HHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHH
Confidence 999999986 99999999999999999999999999999999875 8899999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccccccCcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhcc
Q psy14486 326 RLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS---IKMAKQLRGLGNWLGL 398 (472)
Q Consensus 326 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~---~~~~~~l~~~~~ilGi 398 (472)
|+.+++..... + ...++.++|.+||+||||||+|++.|+++++.+|.+.. +..+...+.+..++|+
T Consensus 314 r~~~~~~~~~~--~-----~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
T PRK12418 314 RWRAAAALPAG--P-----DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDDAAAPALVATAVDALLGV 382 (384)
T ss_pred HHHHHHhcccc--c-----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHhCc
Confidence 99999876421 1 12456789999999999999999999999999999874 3334455566677776
No 12
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=3e-102 Score=748.44 Aligned_cols=299 Identities=54% Similarity=0.946 Sum_probs=258.8
Q ss_pred cccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy14486 17 FYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIK 96 (472)
Q Consensus 17 ~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~ 96 (472)
|+|.++++|+||+||||||+.+||||+|++|.+|+|+|+|+..||+|.||+|+||+||||+++|+++|+++.+++++|++
T Consensus 1 F~p~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~ 80 (300)
T PF01406_consen 1 FKPLNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEE 80 (300)
T ss_dssp ---SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred CcCCCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccC-CCC
Q psy14486 97 AAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNK-INE 175 (472)
Q Consensus 97 ~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g-~v~ 175 (472)
+|.++|++|||.+|+.+||+|+|+++|+++|++|+++|+||++. +|+|||++.++++||+||+++++++..| +++
T Consensus 81 ~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~----~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~ 156 (300)
T PF01406_consen 81 EFFEDMKALNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESE----DGSVYFDVSKFPDYGKLSNQDLEDLEAGARVE 156 (300)
T ss_dssp HHHHHHHHTT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEET----TSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHT
T ss_pred HHHHHHHHcCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcC----CCcEEEeeccccccccccccchhhHHhhhhcc
Confidence 99999999999999999999999999999999999999999995 5999999999999999999999999998 887
Q ss_pred ccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccC
Q psy14486 176 KNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYK 255 (472)
Q Consensus 176 ~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g 255 (472)
.+..|++|.||+|||..++|++. |+||||.||||||||||||+.++||.++|||+||+||+||||+||+||++|++|
T Consensus 157 ~~~~K~~p~DFaLWK~~~~~e~~---w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g 233 (300)
T PF01406_consen 157 VDYEKRNPRDFALWKAAKPGEPS---WDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATG 233 (300)
T ss_dssp T-TTSSSTT-EEEEEE--TTS-----B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHS
T ss_pred cccccCCCcceeeeecccccCCc---ccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhC
Confidence 77889999999999999999988 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHHHHH
Q psy14486 256 HKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKK 322 (472)
Q Consensus 256 ~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~ 322 (472)
++|+++|||+|||+++|+|||||+||+|+++|++++|+|+++||+||++||++|++||++.|++|.|
T Consensus 234 ~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 234 KPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp S-SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred chHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 13
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.5e-64 Score=473.51 Aligned_cols=213 Identities=55% Similarity=0.981 Sum_probs=207.1
Q ss_pred eeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcC
Q psy14486 5 RIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNN 84 (472)
Q Consensus 5 ~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g 84 (472)
+||||+||++++|.|..++++++|+|||||||++||||+|++|.+|+++|++|++|++|.|++|+||+|+||+.+|+++|
T Consensus 1 ~~~~t~~~~~~~~~p~~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g 80 (213)
T cd00672 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEG 80 (213)
T ss_pred CcccCCCCceeeeecCCCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCC
Q psy14486 85 ESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR 164 (472)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~ 164 (472)
++|+++++.|.+.|++++++|||++++.++|+
T Consensus 81 ~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt------------------------------------------------ 112 (213)
T cd00672 81 LSWKEVADYYTKEFFEDMKALNVLPPDVVPRV------------------------------------------------ 112 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCCcceee------------------------------------------------
Confidence 99999999999999999999999996655554
Q ss_pred CccccccCCCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhH
Q psy14486 165 LISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHE 244 (472)
Q Consensus 165 ~~~~~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~ 244 (472)
||||||||+.++||.++|||++|+||+||||+
T Consensus 113 ------------------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~ 144 (213)
T cd00672 113 ------------------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIFPHHE 144 (213)
T ss_pred ------------------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCcChHH
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccC
Q psy14486 245 NEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYS 313 (472)
Q Consensus 245 ~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs 313 (472)
|++||+.|+.|.+++++|+|+|+|.++|+|||||+||+|+++|++++|++|++|||+++++|+++++|+
T Consensus 145 ~~~a~~~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 145 NEIAQSEAATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHHHHHHHHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 999999999888999999999999999999999999999999999999999999999999999999996
No 14
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.4e-57 Score=479.74 Aligned_cols=338 Identities=22% Similarity=0.234 Sum_probs=266.1
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
+..|.+++|||||++||||+|+++.+|+++|+||++|++|.|++|+||+|+||+.+|+++|+++.+++++|.+.|.++|+
T Consensus 2 ~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 81 (511)
T PRK11893 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWE 81 (511)
T ss_pred CEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccC-----------cCcccCCCcc---
Q psy14486 104 LLHIQPPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLN-----------YGKLSGRLIS--- 167 (472)
Q Consensus 104 ~LgI~~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~-----------yg~l~~~~~~--- 167 (472)
+|||.+|.+ ++++ .|++.+++++++|.++|++|++ ++.+|||+.|... +...|+..++
T Consensus 82 ~l~I~~D~~-~~t~~~~~~~~v~~~~~~L~~~G~iY~~-----~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~ 155 (511)
T PRK11893 82 ALNISYDDF-IRTTDPRHKEAVQEIFQRLLANGDIYLG-----KYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVE 155 (511)
T ss_pred HhCCCcCCc-eeCCCHHHHHHHHHHHHHHHHCCCEEEe-----eeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEe
Confidence 999999876 5666 4999999999999999999998 5889999987211 1122332211
Q ss_pred ----------------ccccC---CCCcccc--------ccCccccccccccCCCCCccccccCCCccCCCC--------
Q psy14486 168 ----------------SNFNK---INEKNNF--------KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPG-------- 212 (472)
Q Consensus 168 ----------------~~~~g---~v~~~~~--------k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~Pg-------- 212 (472)
+...+ ++.+... +++..||.+|+ -+..||.+.|+
T Consensus 156 ~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR-----------~~~~WGipiP~~~~~~~~v 224 (511)
T PRK11893 156 EESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISR-----------TNFDWGIPVPGDPKHVIYV 224 (511)
T ss_pred cCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCC-----------CCCCCCccCCCCCCceEEE
Confidence 00000 1111111 12233444444 13346665554
Q ss_pred Cc-------------chhhHh---hhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCcccc
Q psy14486 213 WH-------------IECSAM---SCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMS 276 (472)
Q Consensus 213 Wh-------------iecsam---~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMS 276 (472)
|+ -+|++| ..+++ +.|+|++|+|++||||++++||+.|+ +.++|+.|+|+|||+++|+|||
T Consensus 225 Wfda~~~y~s~~~~p~~~~~~~~~~~~~~--~~D~~~~G~D~~~~h~~~~~a~~~a~-~~~~p~~~~~~g~v~~~G~KMS 301 (511)
T PRK11893 225 WFDALTNYLTALGYPDDEELLAELFNKYW--PADVHLIGKDILRFHAVYWPAFLMAA-GLPLPKRVFAHGFLTLDGEKMS 301 (511)
T ss_pred EecCcHHHHhHhccccccccchhHHHhcC--CCcceEecccccccchhHHHHHHHhC-CCCCCCEEEeeccEEECCeeec
Confidence 31 156655 33444 68999999999999999999999998 6677899999999999999999
Q ss_pred ccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHH---------HHHHHHHHHhc-Ccccccc----
Q psy14486 277 KSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKS---------LIRLYLAIKDI-PKINYKK---- 341 (472)
Q Consensus 277 KS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~---------~~r~~~~~~~~-~~~~~~~---- 341 (472)
||+||+|++.|++++|++|++|||+++. +++++++||++.+.++.+. ++|+.+++.+. .+..+..
T Consensus 302 KS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~ 381 (511)
T PRK11893 302 KSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALT 381 (511)
T ss_pred ccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 9999999999999999999999999997 8999999999999776653 45555555432 1211211
Q ss_pred ccCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 342 IIDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 342 ~~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
..+. ...+.+.+.++| ++++++.|+..|+++++.+|+|++
T Consensus 382 ~~d~~l~~~l~~~~~~v~~~~-~~~~~~~a~~~l~~l~~~~n~y~~ 426 (511)
T PRK11893 382 EADEALLEAAAALLERVRAAM-DNLAFDKALEAILALVRAANKYID 426 (511)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHh
Confidence 0111 145678899999 999999999999999999999986
No 15
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-55 Score=458.93 Aligned_cols=348 Identities=21% Similarity=0.195 Sum_probs=268.8
Q ss_pred EEEEcC--CCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 26 SLYVCG--ITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 26 ~~y~cg--Pt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
++|++. |+|+|++||||++++|.+|+++||+|++|++|.|++|+|+||.||..+|+++|++|++++++|.+.|+++++
T Consensus 6 ~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~ 85 (558)
T COG0143 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFK 85 (558)
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 456555 455599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc------------ccCcC----------
Q psy14486 104 LLHIQPPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN------------FLNYG---------- 159 (472)
Q Consensus 104 ~LgI~~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~------------~~~yg---------- 159 (472)
+|||++|.| .|+| +|.+.+++++++|.++|++|.+. -.++||+.+ ||.||
T Consensus 86 ~l~IsfD~F-~rTt~~~h~~~vq~~f~~L~~~G~I~~~~-----~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce 159 (558)
T COG0143 86 ALNISFDNF-IRTTSPEHKELVQEFFLKLYENGDIYLRE-----YEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCE 159 (558)
T ss_pred HhCCccccc-ccCCCHHHHHHHHHHHHHHHHCCCEeccc-----eeeeEcccccccccchheeccCCCcCccccCcchhh
Confidence 999999998 5666 79999999999999999999984 678999876 34554
Q ss_pred ---c-ccCCCc---cccccC-CCCcc------------------ccccCccccccccc--------cCCCC--Ccccccc
Q psy14486 160 ---K-LSGRLI---SSNFNK-INEKN------------------NFKKDPLDFALWKV--------SKNND--PYEIRWN 203 (472)
Q Consensus 160 ---~-l~~~~~---~~~~~g-~v~~~------------------~~k~~~~df~lwk~--------~~~g~--~~~~~w~ 203 (472)
+ +++.++ ....+| +.+.. -++.+| +|..... .+.|. .++++=+
T Consensus 160 ~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~-~~~~p~~~~ne~~~~i~~GL~d~~IsR~~ 238 (558)
T COG0143 160 NCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNP-DFIWPANRRNEVLNFLKEGLKDLSITRTD 238 (558)
T ss_pred hccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCc-cccCChHHHHHHHHHHHccCcccceecCC
Confidence 1 222221 122333 21111 012233 3432110 12443 3355237
Q ss_pred CCCccCCCC--------Ccch---hhH------------hhhhhhCC--CceEeeeccCCcCchhHHHHHHHhhccCCCC
Q psy14486 204 SKWGAGRPG--------WHIE---CSA------------MSCYLLGS--HFDIHGGGQDLKFPHHENEIAQSEGAYKHKF 258 (472)
Q Consensus 204 ~~wG~g~Pg--------Whie---csa------------m~~~~~g~--~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~ 258 (472)
..||++.|| |.-. +.+ ...++|.. .-.+|++|+|+++||+++|||+++++ |.++
T Consensus 239 ~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~-~~~l 317 (558)
T COG0143 239 LDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAA-GLPL 317 (558)
T ss_pred CCCCccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhC-CCCC
Confidence 899999997 6422 111 12233321 23399999999999999999999997 5667
Q ss_pred ceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHH---------HHHHH
Q psy14486 259 VNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKS---------LIRLY 328 (472)
Q Consensus 259 ~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~---------~~r~~ 328 (472)
|...+.|||++++|+|||||+||+|++.++++.|++|++||||++. +..+|.+||++.|.+..|+ ++|..
T Consensus 318 P~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~ 397 (558)
T COG0143 318 PTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTL 397 (558)
T ss_pred CCEEEeeeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8778888999999999999999999999999999999999999997 9999999999999999874 45555
Q ss_pred HHHHhc-Cccccccc-----cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 329 LAIKDI-PKINYKKI-----IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 329 ~~~~~~-~~~~~~~~-----~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.++.+. .+..|... .+. ..++...+.++| +.+.+++|+..+++|++.+|+|++
T Consensus 398 ~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~i~~l~~~~N~Yi~ 461 (558)
T COG0143 398 GFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEEIMALASRANKYID 461 (558)
T ss_pred HHHHhccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhh
Confidence 544443 33333221 111 145678899999 899999999999999999999997
No 16
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.4e-52 Score=447.27 Aligned_cols=346 Identities=18% Similarity=0.193 Sum_probs=261.2
Q ss_pred EEEcC--CCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy14486 27 LYVCG--ITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLL 104 (472)
Q Consensus 27 ~y~cg--Pt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 104 (472)
++++. |+|+|++||||+++++.+|+++|++|++|++|.|++|+||||+||+.+|+++|+++.+++++|.+.|.+.+++
T Consensus 71 ~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 150 (616)
T PLN02224 71 FVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKD 150 (616)
T ss_pred EEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 44444 4666999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCccccCCC--cHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCc----------CcccCCCccccccC
Q psy14486 105 LHIQPPDYQPCATN--YIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNY----------GKLSGRLISSNFNK 172 (472)
Q Consensus 105 LgI~~d~~~~r~s~--~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~y----------g~l~~~~~~~~~~g 172 (472)
|||++|.+ +|+|+ |.+.+++++.+|.++|++|++ +..++||++|...+ ..+|+..++-....
T Consensus 151 l~I~~D~f-~rTt~~~h~~~vq~~f~~L~~~G~Iy~~-----~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~ 224 (616)
T PLN02224 151 LDIAYDKF-IRTTDPKHEAIVKEFYARVFANGDIYRA-----DYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKED 224 (616)
T ss_pred cCCCCCcC-eeCCCHHHHHHHHHHHHHHHHCCCEEEe-----eeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecc
Confidence 99999976 68774 999999999999999999998 47789999874321 11222221110000
Q ss_pred --CCCccc--------cccCccccc----------cccccCCCCCcccccc-CCCccCCCC--------Ccchh----hH
Q psy14486 173 --INEKNN--------FKKDPLDFA----------LWKVSKNNDPYEIRWN-SKWGAGRPG--------WHIEC----SA 219 (472)
Q Consensus 173 --~v~~~~--------~k~~~~df~----------lwk~~~~g~~~~~~w~-~~wG~g~Pg--------Whiec----sa 219 (472)
.+.... ...++ +|. -|-.....+.+++ .+ .+||++.|+ |+-.. ++
T Consensus 225 ~~ff~Ls~~~~~L~~~~~~~~-~~~~p~~~~~~~~~~l~~gL~d~~IS-R~~~~WGIpvP~~~~~viYVWfDAl~~Yls~ 302 (616)
T PLN02224 225 NYFFALSKYQKPLEDILAQNP-RFVQPSYRLNEVQSWIKSGLRDFSIS-RALVDWGIPVPDDDKQTIYVWFDALLGYISA 302 (616)
T ss_pred eEEEEhHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhcCCCCcccc-CCCCCCceECCCCCCcEEEEehhhHHHHHHH
Confidence 000000 11121 111 1222112234455 44 589999997 43211 11
Q ss_pred hhh----------hhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHH
Q psy14486 220 MSC----------YLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLL 289 (472)
Q Consensus 220 m~~----------~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll 289 (472)
... ..++++.++|++|+|+++||+++|+|+++++ |.++|+.+++|||++++|+|||||+||+|++.|++
T Consensus 303 ~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~-g~~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l 381 (616)
T PLN02224 303 LTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSA-GLELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELV 381 (616)
T ss_pred hcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHC-CCCCCcEEEecccEecCCccccccCCccCCHHHHH
Confidence 110 0124578999999999999999999998876 68889888999999999999999999999999999
Q ss_pred hhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHH---------HHHHHHHHHHhc-Ccccccc-c---cCc-----chhH
Q psy14486 290 KKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKK---------SLIRLYLAIKDI-PKINYKK-I---IDL-----NEPH 349 (472)
Q Consensus 290 ~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~---------~~~r~~~~~~~~-~~~~~~~-~---~~~-----~~~~ 349 (472)
+.|++|++||||++. ++.++.+|+++.+.+..+ .++|+..++.+. .+..+.. . .+. ...+
T Consensus 382 ~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~l 461 (616)
T PLN02224 382 QKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKL 461 (616)
T ss_pred HHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHH
Confidence 999999999999997 899999999998866544 334444443332 2211211 0 111 1466
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 350 AKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 350 ~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
..++.++| +.+++++|+..++++++.+|+|++
T Consensus 462 i~~v~~~m-e~~~~~~Al~~i~el~~~~N~Yi~ 493 (616)
T PLN02224 462 VEKAQTNY-ENLSLSSACEAVLEIGNAGNTYMD 493 (616)
T ss_pred HHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHH
Confidence 78899999 899999999999999999999986
No 17
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=4e-54 Score=430.50 Aligned_cols=277 Identities=21% Similarity=0.223 Sum_probs=227.5
Q ss_pred eEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCC-------------CHHHHH
Q psy14486 25 VSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNE-------------SIKTLT 91 (472)
Q Consensus 25 v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~-------------~~~~~~ 91 (472)
..+..++|||||++||||+++++.+|+++|++|++|++|.+++|+|++|++|+.+|++++. ++++++
T Consensus 2 ~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
T cd00668 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFV 81 (312)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHH
Confidence 4577788999999999999999999999999999999999999999999999999999988 899999
Q ss_pred HHHHHHHHHHHHHhCCCCC--Ccc-ccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccc
Q psy14486 92 SRFIKAAQEDSLLLHIQPP--DYQ-PCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS 168 (472)
Q Consensus 92 ~~~~~~~~~~l~~LgI~~d--~~~-~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~ 168 (472)
++|.++|+++|++|||..| .++ +...+|++.++++|++|+++|++|++ .+.|++....|..+++++...++.
T Consensus 82 ~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~-----~~~v~~~~~~f~~~~~l~~~~~~~ 156 (312)
T cd00668 82 EEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRG-----THPVRITEQWFFDMPKFKEKLLKA 156 (312)
T ss_pred HHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEee-----cceeEeeeeEEEEcHHHHHHHHHH
Confidence 9999999999999999998 543 22337899999999999999999998 477888888788888876654444
Q ss_pred cccCCCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchh----hH---hhhhhhCC--------CceEee
Q psy14486 169 NFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIEC----SA---MSCYLLGS--------HFDIHG 233 (472)
Q Consensus 169 ~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiec----sa---m~~~~~g~--------~~dih~ 233 (472)
+..+.+.+...|+...++. .. ..+-+++ ++++||.|+|||||+| ++ ++..+++. +.|+|+
T Consensus 157 ~~~~~~~p~~~~~~~~~~l---~~-~~d~~is-R~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~ 231 (312)
T cd00668 157 LRRGKIVPEHVKNRMEAWL---ES-LLDWAIS-RQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHL 231 (312)
T ss_pred HhcCCcCChHHHHHHHHHH---hC-CCCeEEe-ccCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEEE
Confidence 4333322222232111111 10 1122222 7889999999999999 42 33333332 689999
Q ss_pred eccCCcCchhHHHHHHHhhccCC-CCceEEEeeeeEEecC-ccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCc
Q psy14486 234 GGQDLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVKINN-KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTI 310 (472)
Q Consensus 234 ~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~~~G-~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~ 310 (472)
+|+|++||||++++||+.++.+. ++.++|+| |||+.+| +|||||+||+|+++|++++|++|++|||+++. ++.+++
T Consensus 232 ~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~ 310 (312)
T cd00668 232 IGKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDI 310 (312)
T ss_pred EecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCC
Confidence 99999999999999999998876 77888887 9999887 99999999999999999999999999999997 688888
Q ss_pred cc
Q psy14486 311 NY 312 (472)
Q Consensus 311 ~f 312 (472)
+|
T Consensus 311 ~~ 312 (312)
T cd00668 311 RL 312 (312)
T ss_pred CC
Confidence 76
No 18
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-50 Score=442.11 Aligned_cols=345 Identities=19% Similarity=0.174 Sum_probs=258.7
Q ss_pred EcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Q psy14486 29 VCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQ 108 (472)
Q Consensus 29 ~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~ 108 (472)
++.|+|+|++||||+|+++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|+++++++++|.+.|.+++++|||+
T Consensus 8 t~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~ 87 (673)
T PRK00133 8 CALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGFGIS 87 (673)
T ss_pred CCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 33457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc------------ccCcCcc---------cCC-
Q psy14486 109 PPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN------------FLNYGKL---------SGR- 164 (472)
Q Consensus 109 ~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~------------~~~yg~l---------~~~- 164 (472)
+|.+ ++++ +|++.++++|++|+++|++|++ ++.+|||+.+ ||.||.. |+.
T Consensus 88 ~d~f-~rtt~~~h~~~v~~~~~~L~~~G~iy~~-----~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~ 161 (673)
T PRK00133 88 FDNY-GSTHSEENRELAQEIYLKLKENGYIYEK-----TIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGAT 161 (673)
T ss_pred CCCC-ccCCcHHHHHHHHHHHHHHHHCCCEEEe-----eeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhcccc
Confidence 9876 6776 6999999999999999999998 5789999876 3444432 111
Q ss_pred -Cccccc------cC-CCCccc----------c--------ccCcc---c----cccccccCCCCCccccccCCC-ccCC
Q psy14486 165 -LISSNF------NK-INEKNN----------F--------KKDPL---D----FALWKVSKNNDPYEIRWNSKW-GAGR 210 (472)
Q Consensus 165 -~~~~~~------~g-~v~~~~----------~--------k~~~~---d----f~lwk~~~~g~~~~~~w~~~w-G~g~ 210 (472)
+..+++ +| .++... + .+++. . ..-|-.....+.+++ ++..| |++.
T Consensus 162 ~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IS-R~~~W~Gipv 240 (673)
T PRK00133 162 YSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDIS-RDAPYFGFEI 240 (673)
T ss_pred CChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCccccee-eeCCccceEC
Confidence 111121 12 111100 0 01110 0 000111112233455 46889 9999
Q ss_pred CC--------Ccchh----hHh-----------hhhhhC-C--CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEe
Q psy14486 211 PG--------WHIEC----SAM-----------SCYLLG-S--HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMH 264 (472)
Q Consensus 211 Pg--------Whiec----sam-----------~~~~~g-~--~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h 264 (472)
|| |.-.. ++. ...+|. . +..+|++|+|+++||..+|||++++. |.++|+.++.
T Consensus 241 P~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~-g~~lP~~v~~ 319 (673)
T PRK00133 241 PGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGA-GYRLPTNVFA 319 (673)
T ss_pred CCCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhC-CCCCCCEEee
Confidence 96 53211 111 112331 1 23499999999999999999999985 6788888888
Q ss_pred eeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCC-CCcccCHHHHHHHHH--HHHHHHHHHHhc------
Q psy14486 265 SGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYR-STINYSEIYLNYAKK--SLIRLYLAIKDI------ 334 (472)
Q Consensus 265 ~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~-~~~~fs~~~l~~~~~--~~~r~~~~~~~~------ 334 (472)
+|||+.+|+|||||+||+|+|.|++++||+|++||||++. +.. ++.+|+++.+....+ .++++.|++.++
T Consensus 320 hg~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k 399 (673)
T PRK00133 320 HGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINK 399 (673)
T ss_pred eccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 677 899999999866443 244555544332
Q ss_pred --CccccccccCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 335 --PKINYKKIIDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 335 --~~~~~~~~~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.+..+....+. ...+..++.++| ++++++.|+..++++++.+|+|++
T Consensus 400 ~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~N~yi~ 453 (673)
T PRK00133 400 RFDGKLPDALADPELLEEFEAAAEKIAEAY-EAREFRKALREIMALADFANKYVD 453 (673)
T ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 156788999999 899999999999999999999986
No 19
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=2.1e-50 Score=431.22 Aligned_cols=346 Identities=21% Similarity=0.228 Sum_probs=260.3
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~Lg 106 (472)
|-+++|+|+|.+||||+|+++.+|+++|++|++|++|.+++|+||+|+||+.+|+++|++++++++.|.+.|.+++++||
T Consensus 3 it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 82 (530)
T TIGR00398 3 ITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLN 82 (530)
T ss_pred EecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCC--cHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc------------ccCcCcc---------cC
Q psy14486 107 IQPPDYQPCATN--YIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN------------FLNYGKL---------SG 163 (472)
Q Consensus 107 I~~d~~~~r~s~--~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~------------~~~yg~l---------~~ 163 (472)
|++|.+ +++++ |++.+++++++|.++|++|++ ++.+|||+.+ ||.||.- |+
T Consensus 83 I~~D~~-~~t~~~~~~~~v~~~~~~L~~kG~iY~~-----~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg 156 (530)
T TIGR00398 83 ISFDRF-IRTTDEEHKEIVQKIFQKLKENGYIYEK-----EIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCG 156 (530)
T ss_pred CCCCCC-ccCCCHHHHHHHHHHHHHHHHCCCEEEe-----eeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhcc
Confidence 999876 56664 999999999999999999998 5889999875 3444421 11
Q ss_pred CC--ccccc------cC-CCCc----------cc--------cccCcccccc-----------ccccCCCCCccccccCC
Q psy14486 164 RL--ISSNF------NK-INEK----------NN--------FKKDPLDFAL-----------WKVSKNNDPYEIRWNSK 205 (472)
Q Consensus 164 ~~--~~~~~------~g-~v~~----------~~--------~k~~~~df~l-----------wk~~~~g~~~~~~w~~~ 205 (472)
.. ..++. +| .++. .. .+.++ ++.. |-.....+.+++ .+..
T Consensus 157 ~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~d~~iS-R~~~ 234 (530)
T TIGR00398 157 RHLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNP-ESGSPASNVKNKAQNWLKGGLKDLAIT-RDLV 234 (530)
T ss_pred ccCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-ccCCCcHHHHHHHHHHHhCCCCCcccc-CcCC
Confidence 11 11111 12 1110 00 01111 0111 211111122344 4566
Q ss_pred -CccCCCCCcch---h--hHhhhhhh--------------CCCce-----EeeeccCCcCchhHHHHHHHhhccCCCCce
Q psy14486 206 -WGAGRPGWHIE---C--SAMSCYLL--------------GSHFD-----IHGGGQDLKFPHHENEIAQSEGAYKHKFVN 260 (472)
Q Consensus 206 -wG~g~PgWhie---c--sam~~~~~--------------g~~~d-----ih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~ 260 (472)
||++.|+|.-. + .|...++. .++.+ +|++|+|++++|+..++|+++|+ |.++++
T Consensus 235 ~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~-~~~~~~ 313 (530)
T TIGR00398 235 YWGIPVPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGL-GLPLPT 313 (530)
T ss_pred CCCeeCCCCCCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhC-CCCCCC
Confidence 99999987311 0 01111100 12344 99999999999999999999887 567787
Q ss_pred EEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHH--HHHHHHHHHHhc---
Q psy14486 261 YWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKK--SLIRLYLAIKDI--- 334 (472)
Q Consensus 261 ~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~--~~~r~~~~~~~~--- 334 (472)
.++++|||+.+|+|||||+||+|+++|++++|++|++|||+++. ++.++++|+++.+.+..| .++++++++.++
T Consensus 314 ~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~ 393 (530)
T TIGR00398 314 QVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGF 393 (530)
T ss_pred EEEeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999996 789999999999988743 345555554332
Q ss_pred -----Ccccccc----ccCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 335 -----PKINYKK----IIDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 335 -----~~~~~~~----~~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.+..+.. ..+. ...+...+.++| ++++++.|++.++++++.+|+|++
T Consensus 394 ~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~n~Yi~ 454 (530)
T TIGR00398 394 IKKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALREIMKLADRGNKYID 454 (530)
T ss_pred HHHhcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 0111 156788999999 899999999999999999999986
No 20
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=2.6e-50 Score=441.53 Aligned_cols=355 Identities=15% Similarity=0.146 Sum_probs=265.6
Q ss_pred cCCCCceEEEEcCCCCC--CcCCcccch-HHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy14486 19 PITPGKVSLYVCGITAY--DYCHLGHAR-LMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFI 95 (472)
Q Consensus 19 p~~~~~v~~y~cgPt~~--g~lHiGhar-~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~ 95 (472)
|. +++-++|++.|.|| |++||||++ ++|.+|+++||+|++|++|.|++|+|+||.+|..+|+++|++|++++++|.
T Consensus 12 ~~-~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~ 90 (801)
T PLN02610 12 PI-PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYH 90 (801)
T ss_pred CC-CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHH
Confidence 53 34446777765555 999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc------------ccC--cC
Q psy14486 96 KAAQEDSLLLHIQPPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN------------FLN--YG 159 (472)
Q Consensus 96 ~~~~~~l~~LgI~~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~------------~~~--yg 159 (472)
+.|.+++++|||++|.| .|++ +|.+.+++++++|.++|++|++. ..++||+.| ||. ||
T Consensus 91 ~~~~~~~~~l~i~~D~f-~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~-----~~~~yc~~~e~fl~d~~v~G~CP~~~C~ 164 (801)
T PLN02610 91 AIHKEVYDWFDISFDKF-GRTSTPQQTEICQAIFKKLMENNWLSENT-----MQQLYCDTCQKFLADRLVEGTCPTEGCN 164 (801)
T ss_pred HHHHHHHHHcCCccccC-ccCCCHHHHHHHHHHHHHHHHCCCEEEee-----EEEeecCCCCCCcchHHhcCcCCccccC
Confidence 99999999999999987 4666 69999999999999999999984 678999876 455 43
Q ss_pred c---------ccCC--Ccccccc------C-CCCcc----------cc--------ccCc------c---ccc-cccccC
Q psy14486 160 K---------LSGR--LISSNFN------K-INEKN----------NF--------KKDP------L---DFA-LWKVSK 193 (472)
Q Consensus 160 ~---------l~~~--~~~~~~~------g-~v~~~----------~~--------k~~~------~---df~-lwk~~~ 193 (472)
. -|+. +..+++. | .++.. .+ +.++ . ..+ -|-...
T Consensus 165 ~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~g 244 (801)
T PLN02610 165 YDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDG 244 (801)
T ss_pred ccccccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCC
Confidence 2 1221 1112221 2 11110 00 0000 0 000 122111
Q ss_pred CCCCccccccCCCccCCCC----------Ccch---h-hHh------hhhhhCCCce---EeeeccCCcCchhHHHHHHH
Q psy14486 194 NNDPYEIRWNSKWGAGRPG----------WHIE---C-SAM------SCYLLGSHFD---IHGGGQDLKFPHHENEIAQS 250 (472)
Q Consensus 194 ~g~~~~~~w~~~wG~g~Pg----------Whie---c-sam------~~~~~g~~~d---ih~~G~Dl~fpH~~~~~a~~ 250 (472)
..+.+++ ++.+||+++|. |+-. + ++. ...+|..+-+ +|++|+|+++||..+|||++
T Consensus 245 L~d~~Is-R~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L 323 (801)
T PLN02610 245 LKPRCIT-RDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTL 323 (801)
T ss_pred CCCccee-eecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHH
Confidence 1233355 57899999983 5321 1 111 1234432223 89999999999999999999
Q ss_pred hhccC-CCCceEEEeeeeEEecCccccccCCCccCHHHHHhh-CChhhHHHHhhhc-CCCCCcccCHHHHHHHHHH----
Q psy14486 251 EGAYK-HKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK-YNPEVIRFFILRS-HYRSTINYSEIYLNYAKKS---- 323 (472)
Q Consensus 251 ~a~~g-~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~---- 323 (472)
+|+.. .++|+.++.|||++++|+|||||+||+|++.++++. |++|++||||++. +..+|.+|||+.|.+..|.
T Consensus 324 ~a~g~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n 403 (801)
T PLN02610 324 LGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLN 403 (801)
T ss_pred HhCCCCcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 99753 457788888999999999999999999999999995 9999999999997 8999999999999888764
Q ss_pred -----HHHHHHHHHh-----cCccccccc------cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 324 -----LIRLYLAIKD-----IPKINYKKI------IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 324 -----~~r~~~~~~~-----~~~~~~~~~------~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
++|+..++.+ ..+..|... .+. ...+..++.++| +.++++.|+..++++++.+|+|++
T Consensus 404 ~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m-e~~~~~~Al~~I~~l~~~~NkYIe 482 (801)
T PLN02610 404 NLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM-EKVKLKQGLKTAMSISSEGNAYLQ 482 (801)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4555555552 222222210 111 146778899999 899999999999999999999997
No 21
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-49 Score=433.13 Aligned_cols=346 Identities=20% Similarity=0.221 Sum_probs=260.8
Q ss_pred EEEEcCCCCC--CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 26 SLYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 26 ~~y~cgPt~~--g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
++|+|+|.|| |++||||+++++.+|+++||+|++|++|.|++|+||||+||+.+|+++|+++++++++|.+.|+++|+
T Consensus 5 ~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~ 84 (648)
T PRK12267 5 TFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWK 84 (648)
T ss_pred CEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4667766665 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccccCCC--cHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCc--------C--cccCCCcccccc
Q psy14486 104 LLHIQPPDYQPCATN--YIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNY--------G--KLSGRLISSNFN 171 (472)
Q Consensus 104 ~LgI~~d~~~~r~s~--~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~y--------g--~l~~~~~~~~~~ 171 (472)
+|||.+|.+ .|+|+ |.+.+++++++|.++|++|++ +..++||+.|...+ | ..|+..++-...
T Consensus 85 ~lgI~~D~f-~rTt~~~h~~~v~~~~~~L~~kG~IY~~-----~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~ 158 (648)
T PRK12267 85 KLDISYDKF-IRTTDERHKKVVQKIFEKLYEQGDIYKG-----EYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKE 158 (648)
T ss_pred HcCCCCCCC-eeCCCHHHHHHHHHHHHHHHHCCCEEEe-----eEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEec
Confidence 999999976 67774 889999999999999999988 46789998763211 1 112322221111
Q ss_pred C--CCCcc--------ccccCcc---------ccc-cccccCCCCCcccccc-CCCccCCCC--------Ccchh----h
Q psy14486 172 K--INEKN--------NFKKDPL---------DFA-LWKVSKNNDPYEIRWN-SKWGAGRPG--------WHIEC----S 218 (472)
Q Consensus 172 g--~v~~~--------~~k~~~~---------df~-lwk~~~~g~~~~~~w~-~~wG~g~Pg--------Whiec----s 218 (472)
. .+... ..+.+|. .+. -|-.....+.+++ ++ .+||++.|+ |+-.. +
T Consensus 159 ~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~IS-R~~~~WGipvP~~~~~v~yVWfDA~~~y~s 237 (648)
T PRK12267 159 ESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSIS-RTSFDWGIPVPFDPKHVVYVWIDALLNYIT 237 (648)
T ss_pred ceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccC-CCCCCcceECCCCCCCEEEEcccchHHHHH
Confidence 0 00000 0111220 111 2432212234455 44 479999997 43221 1
Q ss_pred Hhh---------hhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHH
Q psy14486 219 AMS---------CYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLL 289 (472)
Q Consensus 219 am~---------~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll 289 (472)
+.- ..+ ++.|+|+.|+|++++|...|+|+++++ |.++|+.++.|||++.+|+|||||+||+|++.|++
T Consensus 238 ~~~~~~~~~~~~~~~--wp~~~~~~GkDii~fH~i~wpa~l~~~-~~~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l 314 (648)
T PRK12267 238 ALGYGSDDDELFKKF--WPADVHLVGKDILRFHAIYWPIMLMAL-GLPLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELV 314 (648)
T ss_pred HcCCCCCCchHHHhh--cccceEEEeeeecchhHHHHHHHHHhC-CCCCCcEEEecceEEECCceecccCCcccCHHHHH
Confidence 110 112 367999999999999999999998886 57778777888999999999999999999999999
Q ss_pred hhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHHH-------hc-Ccccccc----ccCc-----chhH
Q psy14486 290 KKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKS--LIRLYLAIK-------DI-PKINYKK----IIDL-----NEPH 349 (472)
Q Consensus 290 ~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--~~r~~~~~~-------~~-~~~~~~~----~~~~-----~~~~ 349 (472)
+.||+|++||||++. ++.++.+||++.+.+..|. .+.+.|++. +. .+..+.. ..+. ...+
T Consensus 315 ~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~ 394 (648)
T PRK12267 315 DRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEET 394 (648)
T ss_pred HHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHH
Confidence 999999999999986 8999999999999776542 233333333 21 2222211 0111 1467
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 350 AKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 350 ~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
..++.++| +++++++|+..++++++.+|+|++
T Consensus 395 ~~~v~~~~-e~~~~~~al~~i~~~~~~~N~Yi~ 426 (648)
T PRK12267 395 LKNYEELM-EELQFSRALEEVWKLISRANKYID 426 (648)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 78899999 899999999999999999999986
No 22
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-48 Score=420.17 Aligned_cols=348 Identities=20% Similarity=0.138 Sum_probs=254.2
Q ss_pred EEEEcCCCCCCcCCcccchHH-HHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy14486 26 SLYVCGITAYDYCHLGHARLM-IVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLL 104 (472)
Q Consensus 26 ~~y~cgPt~~g~lHiGhar~~-v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 104 (472)
.|.++.|+|||.+||||++++ |.+|+++||+|++|++|.|++|+||||+||+.+|+++|+++++++++|.+.|.+++++
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 344445666699999999987 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc------------cCcC------cc---
Q psy14486 105 LHIQPPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF------------LNYG------KL--- 161 (472)
Q Consensus 105 LgI~~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~------------~~yg------~l--- 161 (472)
|||.+|.+ ++++ +|++.+++++++|+++|++|++ ++.++||+.|. |.|| ..
T Consensus 86 l~i~~d~~-~~t~~~~~~~~~~~~~~~L~~~G~~y~~-----~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~ 159 (556)
T PRK12268 86 LGISYDLF-TRTTSPNHHEVVQEFFLKLYENGYIYKK-----TIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDN 159 (556)
T ss_pred cCCcCCCC-cCCCCHHHHHHHHHHHHHHHHCCCeEEe-----eeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhh
Confidence 99999875 7888 8999999999999999999998 58899998752 3343 11
Q ss_pred cCC--Ccccccc------C-CCCc----------cccccC-----------cc----ccccccccCCCCCccccccCCCc
Q psy14486 162 SGR--LISSNFN------K-INEK----------NNFKKD-----------PL----DFALWKVSKNNDPYEIRWNSKWG 207 (472)
Q Consensus 162 ~~~--~~~~~~~------g-~v~~----------~~~k~~-----------~~----df~lwk~~~~g~~~~~~w~~~wG 207 (472)
|+. +..++.. | .++. ...++. |. .+.-|-.....+.+++ ....||
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~IS-R~~~WG 238 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAIT-RDLDWG 238 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCce-eeCCCC
Confidence 111 1111111 1 1110 000000 00 0001211011122333 456799
Q ss_pred cCCCCCcc-----------h---h-hH---hh---------hhhh--CCCceEeeeccCCcCchhHHHHHHHhhccC-CC
Q psy14486 208 AGRPGWHI-----------E---C-SA---MS---------CYLL--GSHFDIHGGGQDLKFPHHENEIAQSEGAYK-HK 257 (472)
Q Consensus 208 ~g~PgWhi-----------e---c-sa---m~---------~~~~--g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g-~~ 257 (472)
.+.| |.- . + ++ .. ..++ ..+.++|+.|+|++++|...+++++.+... .+
T Consensus 239 ipiP-~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~ 317 (556)
T PRK12268 239 IPVP-WPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLK 317 (556)
T ss_pred eeCC-CCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCC
Confidence 9999 421 0 0 11 00 0122 124579999999999999999999888752 56
Q ss_pred CceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHH--HHHHHHH-----
Q psy14486 258 FVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKK--SLIRLYL----- 329 (472)
Q Consensus 258 ~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~--~~~r~~~----- 329 (472)
+|+.+++||||+++|+|||||+||+|+|.|++++||+|++|||+++. +..++++|+++.+....+ .++++.+
T Consensus 318 ~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~ 397 (556)
T PRK12268 318 LPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRV 397 (556)
T ss_pred CCCEeeccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHH
Confidence 67778889999999999999999999999999999999999999987 788999999998865432 2333333
Q ss_pred --HHHhcC-ccccc---cccCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 330 --AIKDIP-KINYK---KIIDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 330 --~~~~~~-~~~~~---~~~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
++.... ...+. ...+. ...+...+.++| ++++++.|++.+++|++.+|+|++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~l~~~~~~~n~yi~ 460 (556)
T PRK12268 398 LSFIEKYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEEIMELAREANKYLD 460 (556)
T ss_pred HHHHHHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333211 11111 00111 146778899999 899999999999999999999976
No 23
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=1.3e-49 Score=406.73 Aligned_cols=296 Identities=22% Similarity=0.247 Sum_probs=211.2
Q ss_pred EEcC--CCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Q psy14486 28 YVCG--ITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLL 105 (472)
Q Consensus 28 y~cg--Pt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 105 (472)
|+|. |+|+|.|||||+.++|.||+++|++|++|++|.|++|+|+||.||..+|+++|++|+++++++.+.|++.+++|
T Consensus 2 ~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~ 81 (391)
T PF09334_consen 2 YITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEAL 81 (391)
T ss_dssp EEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 4444 66779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc------------ccCcCc---------cc
Q psy14486 106 HIQPPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN------------FLNYGK---------LS 162 (472)
Q Consensus 106 gI~~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~------------~~~yg~---------l~ 162 (472)
||++|.| .|+| +|.+.+++++++|.++|++|+++ ..++||+.+ ||.||. -|
T Consensus 82 ~I~~D~F-~rTt~~~h~~~v~~i~~~L~~~G~I~~~~-----~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~c 155 (391)
T PF09334_consen 82 NISYDRF-IRTTDDRHKEFVQEIFKRLYDNGYIYKRE-----YEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENC 155 (391)
T ss_dssp T---SEE-EETTSHHHHHHHHHHHHHHHHTTSEEEEE-----EEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTT
T ss_pred CCCCcce-eCCCCHHHHHHHHHHHHHHHhcCceeecc-----cceeEecCcCcccccceeeccccCcCccccCCCcccCC
Confidence 9999987 5666 68999999999999999999984 678999876 455551 23
Q ss_pred CCCcc--ccc------cC-CCCc----------cccc--------cCcccc--------c-cccccCCCCCccccccCCC
Q psy14486 163 GRLIS--SNF------NK-INEK----------NNFK--------KDPLDF--------A-LWKVSKNNDPYEIRWNSKW 206 (472)
Q Consensus 163 ~~~~~--~~~------~g-~v~~----------~~~k--------~~~~df--------~-lwk~~~~g~~~~~~w~~~w 206 (472)
+..++ +++ +| .... ..++ .++ +| + -|......+.+++ .+.+|
T Consensus 156 G~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~L~d~~Is-~~~~W 233 (391)
T PF09334_consen 156 GRPLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNP-DFPPPRVREIVRNWLKEGLPDLSIS-RPLDW 233 (391)
T ss_dssp SSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHST-TSSHHHHHHHHHHHHHT----EE-E-CTTSS
T ss_pred CCCcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCC-CCCChhHHHHHHHHhhcccCceeee-cCCCC
Confidence 33222 222 12 1111 1110 010 11 0 0111111223345 78899
Q ss_pred ccCCCC--------Ccchh----hH------------hhhhhh---CCCceEeeeccCCcCchhHHHHHHHhhccCCCCc
Q psy14486 207 GAGRPG--------WHIEC----SA------------MSCYLL---GSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFV 259 (472)
Q Consensus 207 G~g~Pg--------Whiec----sa------------m~~~~~---g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~ 259 (472)
|++.|+ |+-.. ++ -...++ +.+..+|++|+|++++|..++||+++|+ |.++|
T Consensus 234 GI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~-~~~lP 312 (391)
T PF09334_consen 234 GIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAA-GLPLP 312 (391)
T ss_dssp SEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHC-TB---
T ss_pred cceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcc-cCCCC
Confidence 999996 53211 00 112233 1234599999999999999999999994 78888
Q ss_pred eEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHHH
Q psy14486 260 NYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKS--LIRLYLAIK 332 (472)
Q Consensus 260 ~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--~~r~~~~~~ 332 (472)
+.++.|||++++|+|||||+||+|+++|+++.|++|++||||++. +..++.+|+++.+.+..|. .+.+-|++.
T Consensus 313 ~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~ 388 (391)
T PF09334_consen 313 RRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVN 388 (391)
T ss_dssp SEEEEE--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHH
T ss_pred CEEEeeeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHh
Confidence 888999999999999999999999999999999999999999997 8999999999999988764 233444443
No 24
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=4.8e-48 Score=387.32 Aligned_cols=276 Identities=22% Similarity=0.239 Sum_probs=209.1
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~Lg 106 (472)
|-++.|+|||++||||+|+++++|+++|++|++|++|.+++|+||||+||+.+|+++|++++++++.+.+.|++++++||
T Consensus 4 it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 83 (319)
T cd00814 4 ITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLN 83 (319)
T ss_pred EEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 44556777799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCC--cHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCC-----CccccccC---CCCc
Q psy14486 107 IQPPDYQPCATN--YIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR-----LISSNFNK---INEK 176 (472)
Q Consensus 107 I~~d~~~~r~s~--~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~-----~~~~~~~g---~v~~ 176 (472)
|.+|.+ +++++ |++.+++++++|.++|++|++ +..++||+.|...+..+... +++++.+- -+..
T Consensus 84 I~~D~~-~~tt~~~~~~~v~~i~~~L~ekG~iY~~-----~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~ 157 (319)
T cd00814 84 ISFDYF-IRTTSPRHKEIVQEFFKKLYENGYIYEG-----EYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEK 157 (319)
T ss_pred CcCCCC-eeCCCHHHHHHHHHHHHHHHHCCCEEee-----eeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHh
Confidence 999876 56664 889999999999999999988 46789988864332211000 01111000 0000
Q ss_pred cccccCcc----ccccccccCCCCCccccccC-CCccCCCC--------Cc----------------chhhHhhhhhhCC
Q psy14486 177 NNFKKDPL----DFALWKVSKNNDPYEIRWNS-KWGAGRPG--------WH----------------IECSAMSCYLLGS 227 (472)
Q Consensus 177 ~~~k~~~~----df~lwk~~~~g~~~~~~w~~-~wG~g~Pg--------Wh----------------iecsam~~~~~g~ 227 (472)
...+.-|. ...-|-.....+.+++ .+. .||++.|+ |+ .+|+.+ ...++
T Consensus 158 ~~~~~~p~~~~~~~~~~l~~~l~d~~is-R~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~--~~~~~ 234 (319)
T cd00814 158 NPDFIWPENARNEVLSWLKEGLKDLSIT-RDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWW--WKDGW 234 (319)
T ss_pred CCccCCCHHHHHHHHHHHhCCCcccCCC-ccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhh--hhcCC
Confidence 00000000 0011221111122233 455 78877775 32 111100 11245
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CC
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HY 306 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~ 306 (472)
+.++|++|+|+++||+++++|++.++ |.++++.++++||++++|+|||||+||+|++.|+++.|++|++||++++. +.
T Consensus 235 ~~~v~~~G~D~~~fh~~~~pa~l~~~-~~~~~~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~ 313 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYWPAMLLGA-GLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPE 313 (319)
T ss_pred CceEEEEeechhhhhHHHHHHHHHhC-CCCCCcEeeeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCC
Confidence 78999999999999999999998876 57888899999999999999999999999999999999999999999997 88
Q ss_pred CCCccc
Q psy14486 307 RSTINY 312 (472)
Q Consensus 307 ~~~~~f 312 (472)
.++.+|
T Consensus 314 ~~d~~f 319 (319)
T cd00814 314 GKDSDF 319 (319)
T ss_pred CCCCCC
Confidence 888887
No 25
>KOG0436|consensus
Probab=100.00 E-value=7.2e-47 Score=367.98 Aligned_cols=345 Identities=21% Similarity=0.220 Sum_probs=272.8
Q ss_pred EEEEcCCCCC--CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 26 SLYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 26 ~~y~cgPt~~--g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
+.+++.|..| ..+||||+++.+.+|+++|+.+.+|..|.|..|+|+||.||...|+.+|..|.+++++...+|.+.++
T Consensus 40 ~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k 119 (578)
T KOG0436|consen 40 TFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWK 119 (578)
T ss_pred eeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHH
Confidence 7777888877 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCc--c----c-CCCccccccC-C
Q psy14486 104 LLHIQPPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGK--L----S-GRLISSNFNK-I 173 (472)
Q Consensus 104 ~LgI~~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~--l----~-~~~~~~~~~g-~ 173 (472)
.+||.++.| .|+| .|...+++++..+.++|++|... ...|||+++...|.+ + + ....-.+.+| .
T Consensus 120 ~~gi~yt~F-IRTTdpkH~a~Vqefw~~~~knG~iy~g~-----~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~ 193 (578)
T KOG0436|consen 120 DAGIAYTKF-IRTTDPKHEAIVQEFWARVFKNGDIYRGD-----YEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNP 193 (578)
T ss_pred HhCcchhhe-eecCCchHHHHHHHHHHHHHhCCceeeec-----ccceEeccccccCCHHHHhcCCCCCCceeeeccCCc
Confidence 999999988 5877 69999999999999999999884 456999998654432 1 0 0011122222 1
Q ss_pred C----C--------------ccccccCccccccccc--------cCCCCCc--ccc--ccCCCccCCCC--------Ccc
Q psy14486 174 N----E--------------KNNFKKDPLDFALWKV--------SKNNDPY--EIR--WNSKWGAGRPG--------WHI 215 (472)
Q Consensus 174 v----~--------------~~~~k~~~~df~lwk~--------~~~g~~~--~~~--w~~~wG~g~Pg--------Whi 215 (472)
+ + .+..++|| +|+.... .+.|.|+ +++ -...||++.|| |+.
T Consensus 194 vv~~kE~NY~FrLSkfqk~l~d~lrkNP-~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfD 272 (578)
T KOG0436|consen 194 VVWRKEDNYFFRLSKFQKPLEDHLRKNP-RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFD 272 (578)
T ss_pred eeEecccceeeeHHhhhhHHHHHHhcCC-CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHH
Confidence 1 0 01134566 5553211 1344443 442 23589999998 642
Q ss_pred hhhHhhhh-----------------hhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCcccccc
Q psy14486 216 ECSAMSCY-----------------LLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKS 278 (472)
Q Consensus 216 ecsam~~~-----------------~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS 278 (472)
|+..+ -+|+|..+|++|+|++.||+++|||.++|+ |.|+|+.++.+||++.+|.|||||
T Consensus 273 ---AL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaA-GlplP~~I~vHghwt~ngmKMsKS 348 (578)
T KOG0436|consen 273 ---ALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAA-GLPLPKMIFVHGHWTKNGMKMSKS 348 (578)
T ss_pred ---HHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhc-CCCCccEEEEeeeeeecceecchh
Confidence 22222 247889999999999999999999999997 788898888889999999999999
Q ss_pred CCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHHHhcCc--cc----------cccc-
Q psy14486 279 FGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKS--LIRLYLAIKDIPK--IN----------YKKI- 342 (472)
Q Consensus 279 ~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--~~r~~~~~~~~~~--~~----------~~~~- 342 (472)
+||++.|.+++++|++|++|||||.. ....|-||+++.+....+. .+.+-+.+.++.+ .. +++.
T Consensus 349 LGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v 428 (578)
T KOG0436|consen 349 LGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTV 428 (578)
T ss_pred hccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcch
Confidence 99999999999999999999999997 7999999999999888864 3345555555432 11 1100
Q ss_pred -cC------cchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 343 -ID------LNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 343 -~~------~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.+ ...++.+.+.+.+ |+|..+.|+.++.+.++..|.+++
T Consensus 429 ~ae~~~lv~~v~kl~ev~a~~~-d~f~~~~ale~V~si~n~~ntlvq 474 (578)
T KOG0436|consen 429 AAEGEPLVDTVEKLPEVAATNY-DNFSLYSALEAVLSIGNAGNTLVQ 474 (578)
T ss_pred hhccchHHHHHHHhHHHHHhhc-ccccHHHHHHHHHHHHHhhhhhhh
Confidence 00 0146678888899 999999999999999999999987
No 26
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=3e-45 Score=366.05 Aligned_cols=272 Identities=21% Similarity=0.190 Sum_probs=207.0
Q ss_pred EEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Q psy14486 26 SLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLL 105 (472)
Q Consensus 26 ~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 105 (472)
-|.++.|+|+|++||||+|+++.+|+++|++|++|++|.+++|+||+|+||+.+|+++|+++++++++|.+.|.+++++|
T Consensus 3 ~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~l 82 (314)
T cd00812 3 YILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRM 82 (314)
T ss_pred EEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 44556688889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc-cccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCC----ccccccC-CCCcc
Q psy14486 106 HIQPPDY-QPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRL----ISSNFNK-INEKN 177 (472)
Q Consensus 106 gI~~d~~-~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~----~~~~~~g-~v~~~ 177 (472)
||.+|.. +.+++ +|++.++.++.+|.++|++|++ ++.+|||+....-|-+++... +.+.... ..-+.
T Consensus 83 gi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~-----~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~ 157 (314)
T cd00812 83 GFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKK-----EAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLDGWPE 157 (314)
T ss_pred ccceecccccccCCHHHHHHHHHHHHHHHHCCCEEec-----CceeeeeCccceEEEEcCcHHHHHHHHHHHHhcCcCCH
Confidence 9998853 12232 6888899999999999999998 588999966543343332111 1111110 10000
Q ss_pred ccccCccccccccccCCCCCccccccCCCccCCC-CCcchhhHhhh-----hhh---------------------CCCce
Q psy14486 178 NFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRP-GWHIECSAMSC-----YLL---------------------GSHFD 230 (472)
Q Consensus 178 ~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~P-gWhiecsam~~-----~~~---------------------g~~~d 230 (472)
..+ ..+..|.. ++ .+.+||.++| +|+++|.+.+. +.. -.+.|
T Consensus 158 ~~~---~~~~~~l~-------is-R~~~wGipvP~~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~d 226 (314)
T cd00812 158 EVR---AMQENWIG-------CS-RQRYWGTPIPWTDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVD 226 (314)
T ss_pred HHH---HHHHHHhe-------ee-eecCCcCCcCcccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCe
Confidence 001 12223432 23 5788999999 47777743211 110 12689
Q ss_pred EeeeccCCcCchhHHHHHHHhhcc--CC---CCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcC
Q psy14486 231 IHGGGQDLKFPHHENEIAQSEGAY--KH---KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSH 305 (472)
Q Consensus 231 ih~~G~Dl~fpH~~~~~a~~~a~~--g~---~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~ 305 (472)
+|++|+|++++|+.+.+....++. |. +++..++++|||+++|+|||||+||+|+++|+++++++|++||++++..
T Consensus 227 i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~ 306 (314)
T cd00812 227 IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAA 306 (314)
T ss_pred eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcC
Confidence 999999999999865544444443 32 5566667899999999999999999999999999999999999999986
Q ss_pred CCCCcccCH
Q psy14486 306 YRSTINYSE 314 (472)
Q Consensus 306 ~~~~~~fs~ 314 (472)
. ++.+|+|
T Consensus 307 ~-~~~~f~~ 314 (314)
T cd00812 307 P-PDADFDW 314 (314)
T ss_pred C-cCCCCCC
Confidence 6 8999985
No 27
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=8e-43 Score=357.17 Aligned_cols=279 Identities=19% Similarity=0.230 Sum_probs=207.0
Q ss_pred eEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHc---------CCC-------HH
Q psy14486 25 VSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN---------NES-------IK 88 (472)
Q Consensus 25 v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~---------g~~-------~~ 88 (472)
..+.++.|||+|++||||+++++.+|+++||+|++|++|.|++|+|+||.+|+..|+++ +++ |+
T Consensus 3 f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~ 82 (382)
T cd00817 3 FVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCW 82 (382)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999999999998765 344 45
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC--CccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCc--c-
Q psy14486 89 TLTSRFIKAAQEDSLLLHIQPP--DYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGK--L- 161 (472)
Q Consensus 89 ~~~~~~~~~~~~~l~~LgI~~d--~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~--l- 161 (472)
+++++|.++|++++++|||..| .++ +++ +|.+.+++++.+|.++|++|++ +..++||+.|...... +
T Consensus 83 ~~~~~~~~~~~~~~~~lgi~~Dw~~~~-~T~~~~~~~~v~~~f~~L~~~G~iy~~-----~~~~~yc~~~~t~l~~~evc 156 (382)
T cd00817 83 EWKEESGGKIREQLKRLGASVDWSREY-FTMDPGLSRAVQEAFVRLYEKGLIYRD-----NRLVNWCPKLRTAISDIEVC 156 (382)
T ss_pred HHHHHHHHHHHHHHHHhCceeecCCCc-CCCCHHHHHHHHHHHHHHHHCCCEEee-----eeEEeecCCcCCCCCcchhc
Confidence 7899999999999999999987 332 333 6889999999999999999998 4789999987422111 1
Q ss_pred --cCCCccccccC--CCCcc--------ccccCcc---------ccccccccCCCCCccccccCCCccCCCCCcch-h--
Q psy14486 162 --SGRLISSNFNK--INEKN--------NFKKDPL---------DFALWKVSKNNDPYEIRWNSKWGAGRPGWHIE-C-- 217 (472)
Q Consensus 162 --~~~~~~~~~~g--~v~~~--------~~k~~~~---------df~lwk~~~~g~~~~~~w~~~wG~g~PgWhie-c-- 217 (472)
|+..++-.... -+... ..+.++. -+.-|-.. ..+.+++ .+..||++.|.|+.+ |
T Consensus 157 ~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~-l~Dw~IS-R~~~WGipvP~~~~~~~~~ 234 (382)
T cd00817 157 SRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLEN-IRDWCIS-RQLWWGHRIPAWYCKDGGH 234 (382)
T ss_pred ccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhh-Cccceee-eccccCCccceEEeCCCCc
Confidence 12111110000 00000 0111111 11112221 2333455 478999999988642 1
Q ss_pred ------------------------------h--------Hhhhh-----h------h--CCCceEeeeccCCcCchhHHH
Q psy14486 218 ------------------------------S--------AMSCY-----L------L--GSHFDIHGGGQDLKFPHHENE 246 (472)
Q Consensus 218 ------------------------------s--------am~~~-----~------~--g~~~dih~~G~Dl~fpH~~~~ 246 (472)
. |.+.+ + + -++.|+|++|+|++++|+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~ 314 (382)
T cd00817 235 WVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARM 314 (382)
T ss_pred EEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHH
Confidence 0 00000 0 1 136799999999999999999
Q ss_pred HHHHhhccCC-CCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCccc
Q psy14486 247 IAQSEGAYKH-KFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINY 312 (472)
Q Consensus 247 ~a~~~a~~g~-~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~f 312 (472)
++++.++.|. |+.++++| |+|+ .+|+|||||+||+|+++|++++|++|++|||+++. ++.++.+|
T Consensus 315 l~~~~~~~g~~p~~~v~~h-g~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 315 IMRGLKLTGKLPFKEVYLH-GLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHHHHhhCCCchHHeEee-eeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 9999988775 44677666 7777 79999999999999999999999999999999987 68888876
No 28
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.3e-42 Score=349.95 Aligned_cols=276 Identities=20% Similarity=0.257 Sum_probs=201.0
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHc-CCCH---------------
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN-NESI--------------- 87 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~-g~~~--------------- 87 (472)
+..+..++|||||++||||+|+++++|+++|++|++|++|.+++|+||||.+|..+|++. |+++
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~ 81 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAK 81 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHH
Confidence 457788899999999999999999999999999999999999999999999999988886 7653
Q ss_pred -HHHHHHHHHHHHHHHHHhCCCCCC---ccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--c-CcCc
Q psy14486 88 -KTLTSRFIKAAQEDSLLLHIQPPD---YQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--L-NYGK 160 (472)
Q Consensus 88 -~~~~~~~~~~~~~~l~~LgI~~d~---~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--~-~yg~ 160 (472)
++++++|++.|.+++++|||..|. +.+..++|++.+++++++|+++|++|++ ++.|||.+..- + -|-+
T Consensus 82 ~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~-----~~~v~~~v~~~~~~qwf~~ 156 (338)
T cd00818 82 CREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRG-----YKVVPWPLIYRATPQWFIR 156 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEecc-----CCeeeeEEEEEecCeEEEE
Confidence 799999999999999999996663 3444558999999999999999999998 57889843211 0 1111
Q ss_pred ccCC--CccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcch-hh----------------H-
Q psy14486 161 LSGR--LISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIE-CS----------------A- 219 (472)
Q Consensus 161 l~~~--~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhie-cs----------------a- 219 (472)
++.. .+.+.... ++-+...+. .+.-|-.. ..+.+++ .+..||.+.|.|.++ |+ +
T Consensus 157 l~~~~~~l~~~~~~~~~~P~~~~~---~~~~~l~~-l~dw~iS-R~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~ 231 (338)
T cd00818 157 VTKIKDRLLEANDKVNWIPEWVKN---RFGNWLEN-RRDWCIS-RQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSG 231 (338)
T ss_pred cHHHHHHHHHHHhcCcEECHHHHH---HHHHHHhc-chhccee-eecccCceeeEEEecCCCeEEEecCCceEEEEEeCC
Confidence 1110 01111111 110111111 11123221 2233344 477899999987654 31 1
Q ss_pred ---hhhh-h------h--CCCceEeeeccCCcC--chhHHHHHHHhhccC-CCCceEEEeeeeEE-ecCccccccCCCcc
Q psy14486 220 ---MSCY-L------L--GSHFDIHGGGQDLKF--PHHENEIAQSEGAYK-HKFVNYWMHSGFVK-INNKKMSKSFGNFC 283 (472)
Q Consensus 220 ---m~~~-~------~--g~~~dih~~G~Dl~f--pH~~~~~a~~~a~~g-~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i 283 (472)
++.. + + .++.|+++.|+|+++ +|...+++.. +.+ .|+.++++| |+++ .+|+|||||+||+|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~--~~~~~p~~~~~~h-g~~~~~~g~KmSKS~gn~i 308 (338)
T cd00818 232 SMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTA--LFGKAPYKNVIVH-GFVLDEDGRKMSKSLGNYV 308 (338)
T ss_pred CCHHHHcCCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHH--hcCCCccceEEEE-eeEECCCCCCCCCCCCCcC
Confidence 1100 0 1 136789999999997 7777777764 334 556677776 6665 58999999999999
Q ss_pred CHHHHHhhCChhhHHHHhhhc-CCCCCccc
Q psy14486 284 TIRDLLKKYNPEVIRFFILRS-HYRSTINY 312 (472)
Q Consensus 284 ~~~dll~~~~~d~lR~~ll~~-~~~~~~~f 312 (472)
+++|+++.|++|++||||++. ++.++++|
T Consensus 309 ~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 309 DPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred CHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 999999999999999999997 68888876
No 29
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-40 Score=370.63 Aligned_cols=351 Identities=19% Similarity=0.191 Sum_probs=256.0
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHH-cCCCHH------------H
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKK-NNESIK------------T 89 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~-~g~~~~------------~ 89 (472)
++..+..++|+|+|.+||||+++++++|+++||+|++|++|.+++|+|.+|.+|+..|++ .|+++. +
T Consensus 38 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~ 117 (800)
T PRK13208 38 PVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRE 117 (800)
T ss_pred CcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHH
Confidence 346666778899999999999999999999999999999999999999999999999987 488765 6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccc-cCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCc------
Q psy14486 90 LTSRFIKAAQEDSLLLHIQPPDYQP-CAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGK------ 160 (472)
Q Consensus 90 ~~~~~~~~~~~~l~~LgI~~d~~~~-r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~------ 160 (472)
++++|.+.|.++|++||+..|+-.. +++ +|.+.++.+|.+|.++|++|++ ...|+||+.+......
T Consensus 118 ~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~-----~~~v~wcp~~~t~Lsd~ev~~~ 192 (800)
T PRK13208 118 LTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRA-----EAPVLWCPRCETAIAQAEVEYR 192 (800)
T ss_pred HHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeec-----CcccccCCCCCCccchhhhccc
Confidence 9999999999999999999985322 222 6899999999999999999998 4778888765321000
Q ss_pred ----------------------------------------------ccCCCc-------------c---ccccC--CCCc
Q psy14486 161 ----------------------------------------------LSGRLI-------------S---SNFNK--INEK 176 (472)
Q Consensus 161 ----------------------------------------------l~~~~~-------------~---~~~~g--~v~~ 176 (472)
|.+... . ++..| -|-.
T Consensus 193 ~~~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~ 272 (800)
T PRK13208 193 EREGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMI 272 (800)
T ss_pred cccceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEe
Confidence 000000 0 00000 0000
Q ss_pred cccccCccccc---------------------------------------------------------------------
Q psy14486 177 NNFKKDPLDFA--------------------------------------------------------------------- 187 (472)
Q Consensus 177 ~~~k~~~~df~--------------------------------------------------------------------- 187 (472)
.+ ..++.||.
T Consensus 273 ~p-~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 351 (800)
T PRK13208 273 CT-FGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLE 351 (800)
T ss_pred CC-CCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEE
Confidence 00 00011110
Q ss_pred -----ccccc------------------------------CC-C-CCccccccCCCccCCCCCcch-h------------
Q psy14486 188 -----LWKVS------------------------------KN-N-DPYEIRWNSKWGAGRPGWHIE-C------------ 217 (472)
Q Consensus 188 -----lwk~~------------------------------~~-g-~~~~~~w~~~wG~g~PgWhie-c------------ 217 (472)
.|.-. .. . +-+++ +...||.+.|-|+.+ |
T Consensus 352 ~~~~~qwfl~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~IS-Rqr~WG~pIP~~~~~~~g~~~~~~~~~l~ 430 (800)
T PRK13208 352 ILVTRQWFIKVLDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCIS-RQRYFGTPIPVWYCKDCGHPILPDEEDLP 430 (800)
T ss_pred EeccceeeEeCHHHHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceee-eccccCCcceEEEeCCCCCeecCchhhhc
Confidence 11000 00 0 11122 234699999977631 1
Q ss_pred -------------h--------------------Hhh-hhhhC-----------CCceEeeeccCCcCchhHHHHHHHhh
Q psy14486 218 -------------S--------------------AMS-CYLLG-----------SHFDIHGGGQDLKFPHHENEIAQSEG 252 (472)
Q Consensus 218 -------------s--------------------am~-~~~~g-----------~~~dih~~G~Dl~fpH~~~~~a~~~a 252 (472)
. ..+ ...+| .|.|++++|+|++++|....++++.+
T Consensus 431 ~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~ 510 (800)
T PRK13208 431 VDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYL 510 (800)
T ss_pred cCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHH
Confidence 0 000 01122 26899999999999999999999988
Q ss_pred ccCC-CCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy14486 253 AYKH-KFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLA 330 (472)
Q Consensus 253 ~~g~-~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~~~r~~~~ 330 (472)
+.|. ||.++++ +||++ .+|+|||||+||+|+|.|++++||+|++|||+++++++++++||++.+....+.++|++|+
T Consensus 511 ~~~~~Pf~~v~~-hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~ 589 (800)
T PRK13208 511 LTGKLPWKNIMI-SGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNA 589 (800)
T ss_pred hcCCCCcceEEE-eeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHH
Confidence 8875 6666655 58887 5999999999999999999999999999999997799999999999999999999999998
Q ss_pred HHhcCccc-----c--c--cccCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHH--HHHHHH
Q psy14486 331 IKDIPKIN-----Y--K--KIIDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANI--INKNKS 382 (472)
Q Consensus 331 ~~~~~~~~-----~--~--~~~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~--~N~~~~ 382 (472)
++.+.... . . ...|. ...+.+++.++| ++++++.|++.|++++.. +|.|++
T Consensus 590 ~r~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~i~~f~~~~~~n~Yie 656 (800)
T PRK13208 590 SRFVLHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEEIESFFWHVFCDDYLE 656 (800)
T ss_pred HHHHHhcccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhHHHHH
Confidence 76542211 0 0 00111 146778999999 799999999999999964 888876
No 30
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-40 Score=352.15 Aligned_cols=313 Identities=18% Similarity=0.189 Sum_probs=246.8
Q ss_pred CCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy14486 21 TPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQE 100 (472)
Q Consensus 21 ~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 100 (472)
.+++|.|+.|||||+|++||||+|+++++|+++|+|++.||+|.++++++|+|+++...+...+..++++++.+.+.|.+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~ 188 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKE 188 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHhCCCCCCccccCCC--cHHHHHHHHHHHHHCCCcc-ccCCCccCCcEEEecccccCcCcccCCCccccccCCCCcc
Q psy14486 101 DSLLLHIQPPDYQPCATN--YIPQILKMIEKLIFNGLAY-QNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKN 177 (472)
Q Consensus 101 ~l~~LgI~~d~~~~r~s~--~~~~~~~~i~~L~~~G~~y-~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~ 177 (472)
+|++|||.+|.+ +++++ +.+.+++++++|.++|++| +. +|.+||+++.+.+.
T Consensus 189 ~l~~LgI~~D~~-~~es~~~~~~~~~~~~~~L~~~G~~y~~~-----~Ga~~~~~~~~~~~------------------- 243 (507)
T PRK01611 189 DLDRLGVHFDVW-FSESELYYNGKVDEVVEDLKEKGLLYVES-----DGALWVRLTEFGDD------------------- 243 (507)
T ss_pred HHHHcCCeeeEE-eecCcchhcchHHHHHHHHHHCCCEEEee-----CCcEEEEchhhCCC-------------------
Confidence 999999999876 45553 4578999999999999999 76 69999987654311
Q ss_pred ccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCC
Q psy14486 178 NFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHK 257 (472)
Q Consensus 178 ~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~ 257 (472)
.|+++||. +|.+. |.+ ..++||++|... + ...|.+.|.|+. .|.....++++++ |.+
T Consensus 244 ------~~~vl~ks--dG~~~---Y~t----~Dia~~~~k~~~----~--d~~i~V~g~~q~-~hf~~~~~~~~~l-g~~ 300 (507)
T PRK01611 244 ------KDRVLIKS--DGTYT---YFT----RDIAYHLYKFER----F--DRVIYVVGADHH-GHFKRLKAALKAL-GYD 300 (507)
T ss_pred ------CCeEEEEC--CCCcc---chH----HHHHHHHHHHhh----c--CEEEEEECCChH-HHHHHHHHHHHHc-CCC
Confidence 26888886 56554 322 234577766532 2 345666677754 2222233555555 443
Q ss_pred Cc--eEEEe--eeeEEe-cCccccccCCCccCHHHHHhh-CCh----------------hhHHHHhhhcCCCCCcccCHH
Q psy14486 258 FV--NYWMH--SGFVKI-NNKKMSKSFGNFCTIRDLLKK-YNP----------------EVIRFFILRSHYRSTINYSEI 315 (472)
Q Consensus 258 ~~--~~~~h--~g~l~~-~G~KMSKS~Gn~i~~~dll~~-~~~----------------d~lR~~ll~~~~~~~~~fs~~ 315 (472)
++ +++.| .|++.. +|+|||||+||+|+++|++++ ++. |++||++++.++.++++|+|+
T Consensus 301 ~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~ 380 (507)
T PRK01611 301 PDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLD 380 (507)
T ss_pred cccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHH
Confidence 32 55677 345543 678999999999999999999 999 999999999999999999999
Q ss_pred HHHHHH--------HHHHHHHHHHHhcCcc--ccc-ccc-C-c-------chhHHHHHHHHHHhccChhHHHHHHHHHHH
Q psy14486 316 YLNYAK--------KSLIRLYLAIKDIPKI--NYK-KII-D-L-------NEPHAKRFIIAMNDDFNTPVAISILFDLAN 375 (472)
Q Consensus 316 ~l~~~~--------~~~~r~~~~~~~~~~~--~~~-~~~-~-~-------~~~~~~~~~~al~dd~n~~~al~~l~~l~~ 375 (472)
.+.+.. .++.|+.+++++.... .+. ... + . ...+.+.+.+++ ++++++.++.+|++|++
T Consensus 381 ~~~~~~~~~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~p~~l~~yl~~la~ 459 (507)
T PRK01611 381 LALSFEGNNPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELEPHRIANYLYELAG 459 (507)
T ss_pred HHHhhcCCCcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHH
Confidence 988774 3567888888775321 110 001 1 1 146788999999 89999999999999999
Q ss_pred HHHHHHH
Q psy14486 376 IINKNKS 382 (472)
Q Consensus 376 ~~N~~~~ 382 (472)
.+|+|++
T Consensus 460 ~f~~fY~ 466 (507)
T PRK01611 460 AFHSFYN 466 (507)
T ss_pred HHHHHHH
Confidence 9999885
No 31
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.6e-39 Score=364.94 Aligned_cols=155 Identities=26% Similarity=0.317 Sum_probs=133.9
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhccC-CCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGAYK-HKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS- 304 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g-~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~- 304 (472)
+|.|+|++|+|++++|+.+++++..|..+ .++|+.|+|||||+.+|+|||||+||+|+|.+++++||+|++||||+++
T Consensus 572 yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~ 651 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAA 651 (938)
T ss_pred CCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcC
Confidence 37899999999999999999999888765 5688999999999999999999999999999999999999999999997
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHhcCcc-c---c-c-cccCc-----chhHHHHHHHHHHhccChhHHH-HHHHH
Q psy14486 305 HYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKI-N---Y-K-KIIDL-----NEPHAKRFIIAMNDDFNTPVAI-SILFD 372 (472)
Q Consensus 305 ~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~~-~---~-~-~~~~~-----~~~~~~~~~~al~dd~n~~~al-~~l~~ 372 (472)
+++++++|+++.+.++.+.+.++++++.++... . + . ...|. .+.+..++.++| ++|+++.|+ +.+++
T Consensus 652 ~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~l~~ 730 (938)
T TIGR00395 652 ETVQDADWKESEVEGTILRLERLYEFAEEITKESNLETGEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYALFD 730 (938)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHH
Confidence 899999999999999999999999998765221 1 1 0 00111 146678899999 799999999 78999
Q ss_pred HHHHHHHHHH
Q psy14486 373 LANIINKNKS 382 (472)
Q Consensus 373 l~~~~N~~~~ 382 (472)
+++.+|.|+.
T Consensus 731 ~~~~~n~Yl~ 740 (938)
T TIGR00395 731 LQADVDWYRR 740 (938)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 32
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=6e-39 Score=359.54 Aligned_cols=351 Identities=19% Similarity=0.214 Sum_probs=254.1
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHH----cCCCH-----------
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKK----NNESI----------- 87 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~----~g~~~----------- 87 (472)
.+..++.++|+|+|.+||||+++++++|+++||.|++|++|.++.|+|.+|.+|+..+++ .|.++
T Consensus 33 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~ 112 (861)
T TIGR00422 33 PPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREK 112 (861)
T ss_pred CeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHH
Confidence 357788888999999999999999999999999999999999999999999988876653 35554
Q ss_pred -HHHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCc-----
Q psy14486 88 -KTLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNY----- 158 (472)
Q Consensus 88 -~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~y----- 158 (472)
++++++|.+.+.+++++||++.|+..++.| .|.+.++.+|.+|+++|++|++. ..|+||+.+....
T Consensus 113 ~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~-----~~v~wcp~~~t~lsd~Ev 187 (861)
T TIGR00422 113 IWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGE-----YLVNWDPKLNTAISDIEV 187 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecC-----cccccCCCCCCcchHhHh
Confidence 578999999999999999999997543333 68899999999999999999984 5677776642110
Q ss_pred -------------------------------------------------CcccCCCcc----------------ccccCC
Q psy14486 159 -------------------------------------------------GKLSGRLIS----------------SNFNKI 173 (472)
Q Consensus 159 -------------------------------------------------g~l~~~~~~----------------~~~~g~ 173 (472)
..|.|.... ++..|+
T Consensus 188 ~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GT 267 (861)
T TIGR00422 188 EYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEYVDMEFGT 267 (861)
T ss_pred hcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCCCCcccCC
Confidence 000000000 000000
Q ss_pred --CCccccccCccccc------------------------------------------------------------cccc
Q psy14486 174 --NEKNNFKKDPLDFA------------------------------------------------------------LWKV 191 (472)
Q Consensus 174 --v~~~~~k~~~~df~------------------------------------------------------------lwk~ 191 (472)
|-.. ...++.||. .|.+
T Consensus 268 G~V~~~-Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~ 346 (861)
T TIGR00422 268 GAVKVT-PAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRS 346 (861)
T ss_pred CceEec-CCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCC
Confidence 0000 000000000 0100
Q ss_pred --------------------------cCC---------------------CCCccccccCCCccCCCCCcch-hhH----
Q psy14486 192 --------------------------SKN---------------------NDPYEIRWNSKWGAGRPGWHIE-CSA---- 219 (472)
Q Consensus 192 --------------------------~~~---------------------g~~~~~~w~~~wG~g~PgWhie-csa---- 219 (472)
.+. .+-+++ +...||.+.|.|+.+ |..
T Consensus 347 g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~IS-Rq~~WG~piP~w~~~~~~~~~v~ 425 (861)
T TIGR00422 347 GTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCIS-RQLIWGHRIPVWYCKECGEVYVA 425 (861)
T ss_pred CCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceee-eecccCCcceEEEECCCCcEEec
Confidence 000 111122 355799999999753 211
Q ss_pred -----------------h--------------hh--hhhC-----------CCceEeeeccCCcCchhHHHHHHHhhccC
Q psy14486 220 -----------------M--------------SC--YLLG-----------SHFDIHGGGQDLKFPHHENEIAQSEGAYK 255 (472)
Q Consensus 220 -----------------m--------------~~--~~~g-----------~~~dih~~G~Dl~fpH~~~~~a~~~a~~g 255 (472)
| .. ..+| +|.|+|+.|+|++|+|...+++++.++.|
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~ 505 (861)
T TIGR00422 426 KEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTG 505 (861)
T ss_pred cchHHhhhhhccCCcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcC
Confidence 0 00 0112 26799999999999999999999999877
Q ss_pred C-CCceEEEeeeeEEe-cCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHH
Q psy14486 256 H-KFVNYWMHSGFVKI-NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKSLIRLYLAIK 332 (472)
Q Consensus 256 ~-~~~~~~~h~g~l~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~~~r~~~~~~ 332 (472)
. ||.++++| |||+. +|+|||||+||+|+|.|++++||+|++||++++. +..++++||++.+.+..+.+++++|+.+
T Consensus 506 ~~Pfk~v~~h-G~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~r 584 (861)
T TIGR00422 506 QVPFKEVYIH-GLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASR 584 (861)
T ss_pred CCchheEEEe-eEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHH
Confidence 5 55566555 99985 8999999999999999999999999999999987 5699999999999999999999999665
Q ss_pred hcCcc-------cc-ccc---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHH--HHHHHHHH
Q psy14486 333 DIPKI-------NY-KKI---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLA--NIINKNKS 382 (472)
Q Consensus 333 ~~~~~-------~~-~~~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~--~~~N~~~~ 382 (472)
.+... .+ ... .|. .+.+..++.++| ++++++.|+..|++++ ..+|.|++
T Consensus 585 f~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~~~f~~A~~~l~~f~~~~~~n~Yie 651 (861)
T TIGR00422 585 FVLMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKAL-DKYRFAEAAKALYEFIWNDFCDWYIE 651 (861)
T ss_pred HHHhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43211 00 000 111 146778999999 8999999999999997 68999976
No 33
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-38 Score=338.95 Aligned_cols=360 Identities=20% Similarity=0.230 Sum_probs=261.5
Q ss_pred cccccCCC---CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHH----HHHHHcCCC-
Q psy14486 15 QIFYPITP---GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKII----ACAKKNNES- 86 (472)
Q Consensus 15 ~~~~p~~~---~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~----~~a~~~g~~- 86 (472)
..|.|..+ ....|.+++|+|+|.||||||.++.+.|+++||.||+||+|.|..|+|+.|-.+. +...++|++
T Consensus 22 ~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r 101 (877)
T COG0525 22 GYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITR 101 (877)
T ss_pred CCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 46777643 3389999999999999999999999999999999999999999999999996544 444445664
Q ss_pred -----------HHHHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEec
Q psy14486 87 -----------IKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSV 152 (472)
Q Consensus 87 -----------~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~ 152 (472)
++++.+++...|.+.|++||++.|+...|-| .+...+++.|.+|+++|+||+.+ .-|.+|+
T Consensus 102 ~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~-----~lVNWcP 176 (877)
T COG0525 102 HDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGE-----RLVNWCP 176 (877)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecC-----CcccCCC
Confidence 6899999999999999999999998766666 67889999999999999999985 3344444
Q ss_pred ccc-----------------------------------------------------cCcCcccCCCcc------------
Q psy14486 153 RNF-----------------------------------------------------LNYGKLSGRLIS------------ 167 (472)
Q Consensus 153 ~~~-----------------------------------------------------~~yg~l~~~~~~------------ 167 (472)
.+- +.|-.|.|+.+.
T Consensus 177 ~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIia 256 (877)
T COG0525 177 KCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIA 256 (877)
T ss_pred ccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeec
Confidence 321 112111111000
Q ss_pred ----ccccC--CCCccccccCccccc------------------------------------------------------
Q psy14486 168 ----SNFNK--INEKNNFKKDPLDFA------------------------------------------------------ 187 (472)
Q Consensus 168 ----~~~~g--~v~~~~~k~~~~df~------------------------------------------------------ 187 (472)
++.-| -|.+ ..-.++.||.
T Consensus 257 D~~VD~eFGTG~VkI-tpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~ 335 (877)
T COG0525 257 DEYVDPEFGTGAVKI-TPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEP 335 (877)
T ss_pred CcccCCcCCCceEEe-cCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeee
Confidence 00000 0000 0000111111
Q ss_pred ---------------------ccc------------ccCCCCCc----------------cccc----cCCCccCCCCCc
Q psy14486 188 ---------------------LWK------------VSKNNDPY----------------EIRW----NSKWGAGRPGWH 214 (472)
Q Consensus 188 ---------------------lwk------------~~~~g~~~----------------~~~w----~~~wG~g~PgWh 214 (472)
+|- ..+.|+.. +-.| ..-||..+|.|+
T Consensus 336 ~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy 415 (877)
T COG0525 336 HKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWY 415 (877)
T ss_pred ccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEE
Confidence 120 01112210 0012 346999999998
Q ss_pred c-hhhHh--------------------------------hh-----hhhCC-----------CceEeeeccCCcCchhHH
Q psy14486 215 I-ECSAM--------------------------------SC-----YLLGS-----------HFDIHGGGQDLKFPHHEN 245 (472)
Q Consensus 215 i-ecsam--------------------------------~~-----~~~g~-----------~~dih~~G~Dl~fpH~~~ 245 (472)
. +|... ++ .-+|+ |.++-+-|.|++|++...
T Consensus 416 ~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvar 495 (877)
T COG0525 416 CKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVAR 495 (877)
T ss_pred ecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHH
Confidence 7 55210 00 01232 567889999999999999
Q ss_pred HHHHHhhccC-CCCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHH
Q psy14486 246 EIAQSEGAYK-HKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKK 322 (472)
Q Consensus 246 ~~a~~~a~~g-~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~ 322 (472)
.+.++..+.| .||....+| |+|. -+|+|||||+||+|.|.|++++||+|+|||++++. +.++|++|+++.++..+|
T Consensus 496 mi~~~~~~~~~~PFk~V~ih-GLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rn 574 (877)
T COG0525 496 MIMRGLHLTGEVPFKDVYIH-GLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRN 574 (877)
T ss_pred HHHHHHHhcCCCCccEEEEe-eeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHH
Confidence 9999999887 677776555 8887 68999999999999999999999999999999997 899999999999999999
Q ss_pred HHHHHHHHHHhcCc----cccc--c-c----cC-----cchhHHHHHHHHHHhccChhHHHHHHHHHHH--HHHHHHH
Q psy14486 323 SLIRLYLAIKDIPK----INYK--K-I----ID-----LNEPHAKRFIIAMNDDFNTPVAISILFDLAN--IINKNKS 382 (472)
Q Consensus 323 ~~~r~~~~~~~~~~----~~~~--~-~----~~-----~~~~~~~~~~~al~dd~n~~~al~~l~~l~~--~~N~~~~ 382 (472)
+.++++|+.+.+.. ..+. . . .+ ..+.+...+.++| |+|++..|...|++|+. .++.|+.
T Consensus 575 F~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~ly~F~W~~fcD~YlE 651 (877)
T COG0525 575 FLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARALYEFIWNDFCDWYLE 651 (877)
T ss_pred HHHHHHhHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999876521 1110 0 0 01 1156788999999 89999999999999995 4677765
No 34
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.6e-39 Score=358.61 Aligned_cols=352 Identities=18% Similarity=0.170 Sum_probs=251.4
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHH----HHHHHHcCCCHH----------
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKI----IACAKKNNESIK---------- 88 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki----~~~a~~~g~~~~---------- 88 (472)
++..+..++|+|+|.+||||++++++.|+++||.|++|++|.|+.|+|.+|.++ +..+.++|+++.
T Consensus 36 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~ 115 (874)
T PRK05729 36 KPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEK 115 (874)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHH
Confidence 346777778999999999999999999999999999999999999999999754 444555577654
Q ss_pred --HHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccC------
Q psy14486 89 --TLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLN------ 157 (472)
Q Consensus 89 --~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~------ 157 (472)
+++++|.+.+.+++++||++.|+-.++.| .+...++.+|.+|+++|++|++. ..|+||+.+...
T Consensus 116 ~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~-----~~v~wcp~~~talsd~EV 190 (874)
T PRK05729 116 VWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGK-----RLVNWDPKLQTALSDLEV 190 (874)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecC-----cccccCCCCCCcchhhhc
Confidence 45999999999999999999997544444 68899999999999999999984 567777654210
Q ss_pred -----------------------------------------------cCcccCCCcc----------------ccccC--
Q psy14486 158 -----------------------------------------------YGKLSGRLIS----------------SNFNK-- 172 (472)
Q Consensus 158 -----------------------------------------------yg~l~~~~~~----------------~~~~g-- 172 (472)
|..|.|.... ++..|
T Consensus 191 ~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG 270 (874)
T PRK05729 191 EYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEYVDPEFGTG 270 (874)
T ss_pred ccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCccCCCCCCCc
Confidence 0000000000 00000
Q ss_pred CC----------------------------------------------------------------------CccccccC
Q psy14486 173 IN----------------------------------------------------------------------EKNNFKKD 182 (472)
Q Consensus 173 ~v----------------------------------------------------------------------~~~~~k~~ 182 (472)
-| .......+
T Consensus 271 ~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~ 350 (874)
T PRK05729 271 AVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGV 350 (874)
T ss_pred ceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCc
Confidence 00 00000000
Q ss_pred ccccc---cccc------------cCCC---------------------CCccccccCCCccCCCCCcchh---------
Q psy14486 183 PLDFA---LWKV------------SKNN---------------------DPYEIRWNSKWGAGRPGWHIEC--------- 217 (472)
Q Consensus 183 ~~df~---lwk~------------~~~g---------------------~~~~~~w~~~wG~g~PgWhiec--------- 217 (472)
|..+. .|-- ...+ +-+++ +...||.+.|-|+.+-
T Consensus 351 ~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcIS-Rq~~WG~pIP~~~~~~~~~~v~~~~ 429 (874)
T PRK05729 351 VIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCIS-RQLWWGHRIPAWYDEDGEVYVGREE 429 (874)
T ss_pred eEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceee-eecccCCcccEEEeCCCcEEeCCcc
Confidence 00000 0100 0001 11222 3457999999876420
Q ss_pred ---------------------hHhhh-hhhC-----------CCceEeeeccCCcCchhHHHHHHHhhccCC-CCceEEE
Q psy14486 218 ---------------------SAMSC-YLLG-----------SHFDIHGGGQDLKFPHHENEIAQSEGAYKH-KFVNYWM 263 (472)
Q Consensus 218 ---------------------sam~~-~~~g-----------~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~ 263 (472)
|+++. ..+| .|.|+|+.|+|++|+|....++++.++.|. ||.++++
T Consensus 430 ~~~~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~ 509 (874)
T PRK05729 430 PEAREKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYI 509 (874)
T ss_pred cccccccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEE
Confidence 01000 0112 267999999999999999988888887764 6677777
Q ss_pred eeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHhcCc----c
Q psy14486 264 HSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKSLIRLYLAIKDIPK----I 337 (472)
Q Consensus 264 h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~----~ 337 (472)
| |+|. .+|+|||||+||+|+|.|++++||+|++||++++. +++++++|+++.+....+.+++++|+.+.+.. .
T Consensus 510 h-G~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~ 588 (874)
T PRK05729 510 H-GLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGA 588 (874)
T ss_pred e-eeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6 8888 79999999999999999999999999999999987 89999999999999999999999987654311 0
Q ss_pred ----cccc-c---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHH--HHHHHHHH
Q psy14486 338 ----NYKK-I---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLA--NIINKNKS 382 (472)
Q Consensus 338 ----~~~~-~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~--~~~N~~~~ 382 (472)
.+.. . .|. ...+...+.++| +++++..|+..|++|+ ..+|.|++
T Consensus 589 ~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~l~~f~~~~~~~~Yle 647 (874)
T PRK05729 589 DVGELPDPEELSLADRWILSRLNRTVAEVTEAL-DKYRFDEAARALYEFIWNEFCDWYLE 647 (874)
T ss_pred CcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0100 0 011 146778999999 8999999999999998 47888876
No 35
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.2e-37 Score=349.55 Aligned_cols=352 Identities=16% Similarity=0.166 Sum_probs=250.6
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHH----HHHcCCC------------
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIAC----AKKNNES------------ 86 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~----a~~~g~~------------ 86 (472)
.+..+..++|+|+|.+|||||+++++.|+++||.|++||+|.|+.|+|.+|-+++.+ +.++|++
T Consensus 88 ~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~ 167 (958)
T PLN02943 88 DPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKR 167 (958)
T ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHH
Confidence 346777778999999999999999999999999999999999999999999887654 4444654
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------
Q psy14486 87 IKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF-------- 155 (472)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~-------- 155 (472)
+++++++|.+.+.+.+++||+..|+-.++.| .+...++.+|.+|+++|++|++. ..|+||+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~-----~~V~wcp~~~Tals~~Ev 242 (958)
T PLN02943 168 VWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGS-----YMVNWSPNLQTAVSDLEV 242 (958)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecC-----ceeccCCCCCCCcCHHHh
Confidence 5677899999999999999999998655555 68899999999999999999984 5566666541
Q ss_pred --------------c--------------------------------CcCcccCC----------Cc----c---ccccC
Q psy14486 156 --------------L--------------------------------NYGKLSGR----------LI----S---SNFNK 172 (472)
Q Consensus 156 --------------~--------------------------------~yg~l~~~----------~~----~---~~~~g 172 (472)
+ .|..+.|. .+ + ++..|
T Consensus 243 ey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~G 322 (958)
T PLN02943 243 EYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFG 322 (958)
T ss_pred hcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCC
Confidence 0 01001000 00 0 00000
Q ss_pred --CCCccccccCccccc---------------------------------------------------------------
Q psy14486 173 --INEKNNFKKDPLDFA--------------------------------------------------------------- 187 (472)
Q Consensus 173 --~v~~~~~k~~~~df~--------------------------------------------------------------- 187 (472)
-|-. ...+++.||.
T Consensus 323 TG~V~~-~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~ 401 (958)
T PLN02943 323 TGVLKI-SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 401 (958)
T ss_pred CceEEe-CCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcE
Confidence 0000 0000000100
Q ss_pred -------ccc-------c-----cCCCC-------------------C--ccccccCCCccCCCCCcch---hhH-----
Q psy14486 188 -------LWK-------V-----SKNND-------------------P--YEIRWNSKWGAGRPGWHIE---CSA----- 219 (472)
Q Consensus 188 -------lwk-------~-----~~~g~-------------------~--~~~~w~~~wG~g~PgWhie---csa----- 219 (472)
+|- . ...++ . +++ +.-.||.+.|.|+++ |+.
T Consensus 402 Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcIS-RQr~WG~pIP~w~~~~~~~~~~~~v~ 480 (958)
T PLN02943 402 IEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCIS-RQLWWGHRIPVWYIVGKDCEEDYIVA 480 (958)
T ss_pred eEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEE-EecCCCCccCceeccccCCCceEEec
Confidence 110 0 00111 1 111 234799999999974 221
Q ss_pred -------------------h--------------hh--hhhC------------CCceEeeeccCCcCchhHHHHHHHhh
Q psy14486 220 -------------------M--------------SC--YLLG------------SHFDIHGGGQDLKFPHHENEIAQSEG 252 (472)
Q Consensus 220 -------------------m--------------~~--~~~g------------~~~dih~~G~Dl~fpH~~~~~a~~~a 252 (472)
+ .. ..+| .|.|+++.|+|++|++....+++...
T Consensus 481 ~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~ 560 (958)
T PLN02943 481 RSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIE 560 (958)
T ss_pred CcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhh
Confidence 0 00 0012 25789999999998877766666555
Q ss_pred ccCC-CCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Q psy14486 253 AYKH-KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAI 331 (472)
Q Consensus 253 ~~g~-~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~~~r~~~~~ 331 (472)
+.|. |+.++|+|..++..+|+|||||+||+|+|.|++++||+|++|||+++++++++++|+++.+.+..+.+++++|+.
T Consensus 561 ~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~ 640 (958)
T PLN02943 561 FTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAG 640 (958)
T ss_pred hcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 5564 778899984444589999999999999999999999999999999999899999999999999999999999965
Q ss_pred HhcCcc------------------cccc---c---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHH--HHHHHH
Q psy14486 332 KDIPKI------------------NYKK---I---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLA--NIINKN 380 (472)
Q Consensus 332 ~~~~~~------------------~~~~---~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~--~~~N~~ 380 (472)
+.+... .+.. . .|. .+.+..++.++| +++++..|+..+++|+ ..+|.|
T Consensus 641 rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~i~~f~~~~~~d~Y 719 (958)
T PLN02943 641 KFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGREIYDFFWSDFADWY 719 (958)
T ss_pred HHHHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHHHHHHHHHHHHHHH
Confidence 543110 0000 0 011 146778899999 8999999999999995 678998
Q ss_pred HH
Q psy14486 381 KS 382 (472)
Q Consensus 381 ~~ 382 (472)
++
T Consensus 720 iE 721 (958)
T PLN02943 720 IE 721 (958)
T ss_pred HH
Confidence 86
No 36
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.7e-37 Score=348.04 Aligned_cols=352 Identities=15% Similarity=0.158 Sum_probs=248.2
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHH-----cCCC-----------
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKK-----NNES----------- 86 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~-----~g~~----------- 86 (472)
.+..|+.++|+++|.+||||++++++.|+++||+|++||+|.|+.|+|++|.++....++ .|.+
T Consensus 48 ~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~ 127 (1052)
T PRK14900 48 PPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLE 127 (1052)
T ss_pred CCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHH
Confidence 357888889999999999999999999999999999999999999999999998765543 2333
Q ss_pred -HHHHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccccc------
Q psy14486 87 -IKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFL------ 156 (472)
Q Consensus 87 -~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~------ 156 (472)
+++++++|.+.+.+++++||+..|+-.++.| +|.+.++.+|.+|+++|++|++. ..|+||+.|..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~-----~~v~wcp~~~T~Lsd~E 202 (1052)
T PRK14900 128 RVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREK-----KLINWCPDCRTALSDLE 202 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecc-----ceeccCCCCCCCccHHH
Confidence 5668999999999999999999997644444 78999999999999999999984 45666654310
Q ss_pred ------------------------------------------------CcCcccCC---------C---c-c----cccc
Q psy14486 157 ------------------------------------------------NYGKLSGR---------L---I-S----SNFN 171 (472)
Q Consensus 157 ------------------------------------------------~yg~l~~~---------~---~-~----~~~~ 171 (472)
.|-.|.|. . + + ++..
T Consensus 203 v~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~ 282 (1052)
T PRK14900 203 VEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKF 282 (1052)
T ss_pred hcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCC
Confidence 00000000 0 0 0 0000
Q ss_pred CC--CCccccccCcccccc------------------------------------------------------------c
Q psy14486 172 KI--NEKNNFKKDPLDFAL------------------------------------------------------------W 189 (472)
Q Consensus 172 g~--v~~~~~k~~~~df~l------------------------------------------------------------w 189 (472)
|+ |-. ..-+++.||.+ |
T Consensus 283 GTG~V~~-~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~ 361 (1052)
T PRK14900 283 GTGAVKV-TPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQ 361 (1052)
T ss_pred CCCeEEe-cCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeC
Confidence 00 000 00000111110 1
Q ss_pred ccc-----------------------------------------------CCCCCccccccCCCccCCCCCcch------
Q psy14486 190 KVS-----------------------------------------------KNNDPYEIRWNSKWGAGRPGWHIE------ 216 (472)
Q Consensus 190 k~~-----------------------------------------------~~g~~~~~~w~~~wG~g~PgWhie------ 216 (472)
++. ...+.+++ +...||.++|.|+++
T Consensus 362 R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~IS-Rqr~WG~PIP~w~~~~~~~~v 440 (1052)
T PRK14900 362 RSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCIS-RQLWWGHQIPAWYCPDGHVTV 440 (1052)
T ss_pred CCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEE-eecCCCceeCeEEcCCCcEEe
Confidence 000 00111122 245799999999753
Q ss_pred ----------h----------------hHhhhhh--hC-----------CCceEeeeccCCcCchhHHHHHHHhhccCCC
Q psy14486 217 ----------C----------------SAMSCYL--LG-----------SHFDIHGGGQDLKFPHHENEIAQSEGAYKHK 257 (472)
Q Consensus 217 ----------c----------------sam~~~~--~g-----------~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~ 257 (472)
| ++.+.++ +| +|.|+|++|+|++++|....+++...+.|..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~ 520 (1052)
T PRK14900 441 ARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEV 520 (1052)
T ss_pred cccccccccccCccceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCC
Confidence 2 0110111 12 2679999999999888777666666655643
Q ss_pred CceEEEeeeeEEe-cCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHhcC
Q psy14486 258 FVNYWMHSGFVKI-NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKSLIRLYLAIKDIP 335 (472)
Q Consensus 258 ~~~~~~h~g~l~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~ 335 (472)
+.+.++.||||+. +|+|||||+||+|+|.|++++||+|++||||++. ++.++++||++.++...+.+++++|+.+.+.
T Consensus 521 Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~ 600 (1052)
T PRK14900 521 PFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFAL 600 (1052)
T ss_pred ccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455699997 9999999999999999999999999999999986 8999999999999988888999888654331
Q ss_pred ----ccc-----ccc-c---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHH--HHHHHHHH
Q psy14486 336 ----KIN-----YKK-I---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLA--NIINKNKS 382 (472)
Q Consensus 336 ----~~~-----~~~-~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~--~~~N~~~~ 382 (472)
... +.. . .|. ...+..++.++| ++|++..|+..+++|+ ..+|.|++
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~y~f~~A~~~i~~f~~~~~~n~Yie 666 (1052)
T PRK14900 601 MNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEAL-EAFRFNDAANAVYAFVWHELCDWYIE 666 (1052)
T ss_pred HhhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhhHHHHH
Confidence 110 100 0 111 146778999999 8999999999999998 47899986
No 37
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.3e-36 Score=336.61 Aligned_cols=124 Identities=20% Similarity=0.188 Sum_probs=111.1
Q ss_pred EEEEcC--CCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 26 SLYVCG--ITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 26 ~~y~cg--Pt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
.+|+|+ |+|+|.+||||+++++++|+++||+|++|++|.|++|+|+||.+|+.+|.++|+++.++++++++.|+++|+
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~ 112 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLK 112 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 466664 555599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCcc-ccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc
Q psy14486 104 LLHIQPPDYQ-PCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN 154 (472)
Q Consensus 104 ~LgI~~d~~~-~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~ 154 (472)
+|||.+|.-. .+++ +|.+.++++|.+|+++|++|++ +..|+||+.|
T Consensus 113 ~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~-----~~~v~wcp~~ 161 (805)
T PRK00390 113 SLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRK-----ESPVNWCPVD 161 (805)
T ss_pred HhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEe-----cCEEEecCCc
Confidence 9999988531 1222 7999999999999999999998 4778888875
No 38
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.5e-36 Score=337.08 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=122.2
Q ss_pred CCceEeeeccCCcC--chhHHHHHHHhhccCCCCceEEEeeeeEEe-cCccccccCCCccCHHHHHhhCChhhHHHHhhh
Q psy14486 227 SHFDIHGGGQDLKF--PHHENEIAQSEGAYKHKFVNYWMHSGFVKI-NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303 (472)
Q Consensus 227 ~~~dih~~G~Dl~f--pH~~~~~a~~~a~~g~~~~~~~~h~g~l~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~ 303 (472)
+|.|+|++|+|+++ +|...++++.. .|.++++.++.|||++. +|+|||||+||+|+|.+++++||+|++|||+++
T Consensus 544 ~P~Dl~~~G~Di~r~Wf~~~l~~~~~~--~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~ 621 (912)
T PRK05743 544 YPADLYLEGSDQHRGWFQSSLLTSVAT--RGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVAS 621 (912)
T ss_pred CCceEEEecccccchHHHHHHHHHHHh--cCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHh
Confidence 47899999999997 55666666544 57666666677799985 999999999999999999999999999999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHHhcCc----cccc------cc---cCc-----chhHHHHHHHHHHhccChhH
Q psy14486 304 SHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPK----INYK------KI---IDL-----NEPHAKRFIIAMNDDFNTPV 365 (472)
Q Consensus 304 ~~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~----~~~~------~~---~~~-----~~~~~~~~~~al~dd~n~~~ 365 (472)
++++++++||++.+.+..+.+++++|+++.+.+ ..+. .. .|. .+.+..++.++| ++|++++
T Consensus 622 ~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~-e~~~f~~ 700 (912)
T PRK05743 622 TDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAY-ENYDFHK 700 (912)
T ss_pred cCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHH
Confidence 899999999999999988888888888655421 1110 00 111 146788999999 8999999
Q ss_pred HHHHHHHHH--HHHHHHHH
Q psy14486 366 AISILFDLA--NIINKNKS 382 (472)
Q Consensus 366 al~~l~~l~--~~~N~~~~ 382 (472)
|++.|++++ ...|.|++
T Consensus 701 a~~~l~~f~~~~ls~~Yie 719 (912)
T PRK05743 701 VYQKLHNFCSVDLSAFYLD 719 (912)
T ss_pred HHHHHHHHhhhhhceeehe
Confidence 999999999 45576654
No 39
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-35 Score=333.80 Aligned_cols=352 Identities=22% Similarity=0.237 Sum_probs=249.2
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHc-CCC---------------
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN-NES--------------- 86 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~-g~~--------------- 86 (472)
.+..++..+|+++|.+||||++++++.|+++||.|++||+|.+..|+|.||.+|+..+++. |++
T Consensus 41 ~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~ 120 (975)
T PRK06039 41 PEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNE 120 (975)
T ss_pred CCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHH
Confidence 3567888889999999999999999999999999999999999999999999999999774 654
Q ss_pred -HHHHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccccc------
Q psy14486 87 -IKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFL------ 156 (472)
Q Consensus 87 -~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~------ 156 (472)
|++++.+|.+.+.+.+++||+..|+-.+..| .+.+.++.+|.+|+++|++|++. ..|+||+.|..
T Consensus 121 ~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~-----~~v~wcp~~~T~Ls~~E 195 (975)
T PRK06039 121 KCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGY-----RVVPYCPRCETPLSNHE 195 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecc-----eeeeecCCCCCCccHHH
Confidence 7899999999999999999988887544555 68899999999999999999984 56677765410
Q ss_pred -----------------------------------------------C--cC----------------------------
Q psy14486 157 -----------------------------------------------N--YG---------------------------- 159 (472)
Q Consensus 157 -----------------------------------------------~--yg---------------------------- 159 (472)
+ |.
T Consensus 196 v~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~ 275 (975)
T PRK06039 196 VAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVE 275 (975)
T ss_pred HhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEe
Confidence 0 00
Q ss_pred -----cccCCC----cc-------cc--ccC-CCCcc--------ccccCccccccccc---------------------
Q psy14486 160 -----KLSGRL----IS-------SN--FNK-INEKN--------NFKKDPLDFALWKV--------------------- 191 (472)
Q Consensus 160 -----~l~~~~----~~-------~~--~~g-~v~~~--------~~k~~~~df~lwk~--------------------- 191 (472)
.|.+.. +. .+ ..+ .|+.+ .....+.||..++.
T Consensus 276 ~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~ 355 (975)
T PRK06039 276 TFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPD 355 (975)
T ss_pred eecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCcc
Confidence 000000 00 00 000 00000 00001112211110
Q ss_pred ---------------------------------------c------------------------------------CC--
Q psy14486 192 ---------------------------------------S------------------------------------KN-- 194 (472)
Q Consensus 192 ---------------------------------------~------------------------------------~~-- 194 (472)
. +.
T Consensus 356 ~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~ 435 (975)
T PRK06039 356 YAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGR 435 (975)
T ss_pred ccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEECcccchhh
Confidence 0 00
Q ss_pred ------C--CCccccccCCCccCCCCCcch-hhH----------------------------------------h-----
Q psy14486 195 ------N--DPYEIRWNSKWGAGRPGWHIE-CSA----------------------------------------M----- 220 (472)
Q Consensus 195 ------g--~~~~~~w~~~wG~g~PgWhie-csa----------------------------------------m----- 220 (472)
+ +-+++ +...||.+.|.|+++ |.. |
T Consensus 436 ~~~wl~~l~DW~IS-Rqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~d 514 (975)
T PRK06039 436 FGKWLENARDWNIS-RNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPD 514 (975)
T ss_pred HHHHHhcCccceee-eccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEeccc
Confidence 0 00111 234699999999864 410 0
Q ss_pred ---------hh--hhhC------------CCceEeeeccCCcCchhHHHHHHHhhccCC-CCceEEEeeeeEEe-cCccc
Q psy14486 221 ---------SC--YLLG------------SHFDIHGGGQDLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVKI-NNKKM 275 (472)
Q Consensus 221 ---------~~--~~~g------------~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~~-~G~KM 275 (472)
+. ..+| +|.|+++.|+|+++++.....+.+.+++|. ||.++ +.||||+. +|+||
T Consensus 515 VlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v-~~hG~Vld~~G~KM 593 (975)
T PRK06039 515 VIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNV-LVHGHVLDEDGQKM 593 (975)
T ss_pred cccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEE-EEeeeEECCCCCCc
Confidence 00 0011 267899999999998776666666777775 55555 55598885 99999
Q ss_pred cccCCCccCHHHHHhhCChhhHHHHhhhcC-CCCCcccCHHH-HHHHHHHHHHHHHHHHhcC------cc--c---ccc-
Q psy14486 276 SKSFGNFCTIRDLLKKYNPEVIRFFILRSH-YRSTINYSEIY-LNYAKKSLIRLYLAIKDIP------KI--N---YKK- 341 (472)
Q Consensus 276 SKS~Gn~i~~~dll~~~~~d~lR~~ll~~~-~~~~~~fs~~~-l~~~~~~~~r~~~~~~~~~------~~--~---~~~- 341 (472)
|||+||+|+|.|++++||+|++|||+++.. .+++++||++. ++...+.+++++|+++.+. .. . ...
T Consensus 594 SKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~ 673 (975)
T PRK06039 594 SKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVD 673 (975)
T ss_pred CCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccc
Confidence 999999999999999999999999999984 69999999999 6666788899888765431 10 0 000
Q ss_pred c---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHH-HHHHH
Q psy14486 342 I---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANII-NKNKS 382 (472)
Q Consensus 342 ~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~-N~~~~ 382 (472)
. .|. ...+..++.++| ++|+++.|++.|++|+..+ |.|+.
T Consensus 674 ~~~~~D~wils~l~~li~~v~~a~-e~y~~~~A~~~l~~f~~~lsn~Yi~ 722 (975)
T PRK06039 674 SLNELDRWILSRLNSLVKEVTEAL-DNYDITKAARAIRDFVDDLSNWYIR 722 (975)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 146778999999 8999999999999999776 55654
No 40
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=1.1e-35 Score=329.97 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=112.7
Q ss_pred CceEEEEc--CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy14486 23 GKVSLYVC--GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQE 100 (472)
Q Consensus 23 ~~v~~y~c--gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 100 (472)
++-++|++ .|+|+|.+||||+++++++|+++||+|++||+|.|++|+|++|.+|+.+|.++|+++.++++++++.+.+
T Consensus 27 ~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~ 106 (842)
T TIGR00396 27 NKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKK 106 (842)
T ss_pred CCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34445555 5667799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCccc-cCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc
Q psy14486 101 DSLLLHIQPPDYQP-CAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN 154 (472)
Q Consensus 101 ~l~~LgI~~d~~~~-r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~ 154 (472)
+|++||+.+|+-.. +++ +|.+.++.+|.+|+++|++|++ +..|+||+.|
T Consensus 107 ~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~-----~~~v~wcp~~ 158 (842)
T TIGR00396 107 QLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVK-----EADVNWCPND 158 (842)
T ss_pred HHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEee-----ccceEEeCCC
Confidence 99999999886322 222 7899999999999999999998 4778888776
No 41
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=2e-34 Score=323.37 Aligned_cols=126 Identities=21% Similarity=0.170 Sum_probs=108.8
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHc-CCC----------------
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN-NES---------------- 86 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~-g~~---------------- 86 (472)
+..++..+|+++|.+||||++++++.|+++||.|++||+|.|++|+|.+|.+|+..|+++ |++
T Consensus 37 ~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~ 116 (861)
T TIGR00392 37 EFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREK 116 (861)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHH
Confidence 456677778888999999999999999999999999999999999999999999999766 654
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc
Q psy14486 87 IKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN 154 (472)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~ 154 (472)
+++++.++++.+.+++++||+..|+-.+..| +|.+.++.+|.+|+++|++|++. ..|+||+.+
T Consensus 117 c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~-----~~v~w~p~~ 182 (861)
T TIGR00392 117 CREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGL-----KPVYWSPRC 182 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecc-----eeeecCCCc
Confidence 3589999999999999999998876544444 68899999999999999999984 455555543
No 42
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-34 Score=322.35 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=121.6
Q ss_pred CCceEeeeccCCcC--chhHHHHHHHhhccCC-CCceEEEeeeeEEe-cCccccccCCCccCHHHHHhhCChhhHHHHhh
Q psy14486 227 SHFDIHGGGQDLKF--PHHENEIAQSEGAYKH-KFVNYWMHSGFVKI-NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302 (472)
Q Consensus 227 ~~~dih~~G~Dl~f--pH~~~~~a~~~a~~g~-~~~~~~~h~g~l~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll 302 (472)
+|.|+|+.|+|+++ +|. ...++.++.|. |+.+.++| ||++. +|+|||||+||+|+|.+++++||+|++|||++
T Consensus 582 ~PaD~~~eG~Di~rgWF~s--~ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~ll 658 (961)
T PRK13804 582 WPADLYLEGSDQHRGWFNS--SLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVA 658 (961)
T ss_pred CCceEEEEEcccccHHHHH--HHHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHH
Confidence 46899999999997 555 45566666675 44566555 88885 99999999999999999999999999999999
Q ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHhcCc----cccc-----c-c---cCc-----chhHHHHHHHHHHhccChh
Q psy14486 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPK----INYK-----K-I---IDL-----NEPHAKRFIIAMNDDFNTP 364 (472)
Q Consensus 303 ~~~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~----~~~~-----~-~---~~~-----~~~~~~~~~~al~dd~n~~ 364 (472)
+++++++++||++.|.+..+.+++++|+++.+.+ ..+. . . .|. ...+..++.++| ++|+++
T Consensus 659 s~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~ 737 (961)
T PRK13804 659 SVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFK 737 (961)
T ss_pred hCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 9899999999999999988889999988865421 1111 0 0 111 146778999999 899999
Q ss_pred HHHHHHHHHH-H-HHHHHHH
Q psy14486 365 VAISILFDLA-N-IINKNKS 382 (472)
Q Consensus 365 ~al~~l~~l~-~-~~N~~~~ 382 (472)
+|++.+++++ . ..|.|++
T Consensus 738 ~a~~~l~~f~~~~lsn~Yle 757 (961)
T PRK13804 738 RIYKALVNFVNVDLSAFYFD 757 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 3 4688876
No 43
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=8e-34 Score=322.27 Aligned_cols=155 Identities=16% Similarity=0.214 Sum_probs=125.3
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEe-cCccccccCCCccCHHHHHhhCChhhHHHHhhhcC
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKI-NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSH 305 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~ 305 (472)
+|.|+++.|+|+++.|.-...+++.+++|.++++.+++|||++. +|+|||||+||+|+|.+++++||+|++|||+++++
T Consensus 566 ~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 566 FPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSP 645 (1159)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCC
Confidence 36789999999999887666777778888888888899999997 79999999999999999999999999999999876
Q ss_pred C--CCCcccCHHHHHHHH-HHHHHHHHHHHhc----Cc--------ccccc--c-------cCc-----chhHHHHHHHH
Q psy14486 306 Y--RSTINYSEIYLNYAK-KSLIRLYLAIKDI----PK--------INYKK--I-------IDL-----NEPHAKRFIIA 356 (472)
Q Consensus 306 ~--~~~~~fs~~~l~~~~-~~~~r~~~~~~~~----~~--------~~~~~--~-------~~~-----~~~~~~~~~~a 356 (472)
+ ..+++|+++.+.+.. +.+.+++|+++.+ .. ..+.. . .|. .+.+...+.++
T Consensus 646 ~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~ 725 (1159)
T PLN02882 646 VVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREE 725 (1159)
T ss_pred cccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 688999999998765 4677777754332 11 11110 0 111 14678899999
Q ss_pred HHhccChhHHHHHHHHHHH-HHHHHHH
Q psy14486 357 MNDDFNTPVAISILFDLAN-IINKNKS 382 (472)
Q Consensus 357 l~dd~n~~~al~~l~~l~~-~~N~~~~ 382 (472)
| ++|++.+|+..|++++. .+|.|++
T Consensus 726 m-e~y~f~~A~~~I~~Fv~~lsN~YIe 751 (1159)
T PLN02882 726 M-GAYRLYTVVPYLVKFIDNLTNIYVR 751 (1159)
T ss_pred H-HccCHHHHHHHHHHHHHHHhHHHHH
Confidence 9 89999999999999997 5899986
No 44
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=3.7e-34 Score=321.62 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=128.3
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhccCC-CCceEEEeeeeEE-ecCccccccCCCccCHHHHHh---------hCChh
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLK---------KYNPE 295 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~---------~~~~d 295 (472)
+|.|+|+.|+|++++|....+.++.++.|. |+.++|+| ||++ .+|+|||||+||+|+|.++++ +||+|
T Consensus 563 ~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD 641 (974)
T PLN02843 563 YPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGAD 641 (974)
T ss_pred CCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChH
Confidence 468999999999998888888887787775 67788888 6665 589999999999999999999 79999
Q ss_pred hHHHHhhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHhcCc----cccc-----cc---cCc-----chhHHHHHHHHHH
Q psy14486 296 VIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPK----INYK-----KI---IDL-----NEPHAKRFIIAMN 358 (472)
Q Consensus 296 ~lR~~ll~~~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~----~~~~-----~~---~~~-----~~~~~~~~~~al~ 358 (472)
++|||+++++|+++++|+.+.+.++.+.+++++++++.+.+ ..+. .. .|. .+.+..++.++|
T Consensus 642 ~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay- 720 (974)
T PLN02843 642 VLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY- 720 (974)
T ss_pred HHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999998775321 1110 00 111 146788999999
Q ss_pred hccChhHHHHHHHHH--HHHHHHHHH
Q psy14486 359 DDFNTPVAISILFDL--ANIINKNKS 382 (472)
Q Consensus 359 dd~n~~~al~~l~~l--~~~~N~~~~ 382 (472)
++|++++|++.|+++ ....|.|++
T Consensus 721 e~y~f~~A~~~i~~f~~~dlsn~Yie 746 (974)
T PLN02843 721 DNYQFFKIFQILQRFTIVDLSNFYLD 746 (974)
T ss_pred HccCHHHHHHHHHHHHHHHHhHHHHH
Confidence 899999999999988 458898886
No 45
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.2e-34 Score=319.16 Aligned_cols=154 Identities=26% Similarity=0.347 Sum_probs=133.0
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccC-CCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-C
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYK-HKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-H 305 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g-~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~ 305 (472)
|.|+|++|+|++++|+.+++.++.++.+ .|+|+.+++||||+.+|+|||||+||+|+|.|++++||+|++|||+++. +
T Consensus 530 P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~ 609 (897)
T PRK12300 530 PVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAE 609 (897)
T ss_pred CceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCC
Confidence 6799999999999999999888888776 5788888999999999999999999999999999999999999999985 8
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHhcCccccc---cccCc-----chhHHHHHHHHHHhccChhHHHHHHH-HHHHH
Q psy14486 306 YRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYK---KIIDL-----NEPHAKRFIIAMNDDFNTPVAISILF-DLANI 376 (472)
Q Consensus 306 ~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~al~dd~n~~~al~~l~-~l~~~ 376 (472)
+.++++|+++.+.++.+.++|++++++.+....+. ...|. .+.+..++.++| ++|+++.|+..++ .+...
T Consensus 610 ~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~i~~~l~~~ 688 (897)
T PRK12300 610 LLQDADWREKEVESVRRQLERFYELAKELIEIGGEEELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQEAFYELLND 688 (897)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876332111 00111 156788999999 8999999998775 77788
Q ss_pred HHHHHH
Q psy14486 377 INKNKS 382 (472)
Q Consensus 377 ~N~~~~ 382 (472)
+|.|++
T Consensus 689 ~n~Yi~ 694 (897)
T PRK12300 689 LRWYLR 694 (897)
T ss_pred HHHHHH
Confidence 999886
No 46
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=7.8e-34 Score=321.76 Aligned_cols=352 Identities=17% Similarity=0.162 Sum_probs=246.6
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHH----H-HHcCCC-----------
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIAC----A-KKNNES----------- 86 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~----a-~~~g~~----------- 86 (472)
.+..+..++|+|+|.+||||++++++.|+++||.|++|++|.|+.|+|++|.++... . .+.|.+
T Consensus 60 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~ 139 (995)
T PTZ00419 60 KKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLK 139 (995)
T ss_pred CeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHH
Confidence 457778888999999999999999999999999999999999999999999877433 2 344554
Q ss_pred -HHHHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccccc------
Q psy14486 87 -IKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFL------ 156 (472)
Q Consensus 87 -~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~------ 156 (472)
+++++++|.+.+.++|++||+..|+-..+.| +|...++.+|.+|+++|++|++. ..|+||+.+-.
T Consensus 140 ~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~-----~~V~wcp~~~Talsd~E 214 (995)
T PTZ00419 140 KVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDT-----RLVNWCCYLKTAISDIE 214 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecc-----eeeecCCCCCCCCchhh
Confidence 4678999999999999999999996433333 68899999999999999999984 55666654310
Q ss_pred ---------------Cc------Cc-------ccCCC----------ccccc-----------------cC---CCCc--
Q psy14486 157 ---------------NY------GK-------LSGRL----------ISSNF-----------------NK---INEK-- 176 (472)
Q Consensus 157 ---------------~y------g~-------l~~~~----------~~~~~-----------------~g---~v~~-- 176 (472)
.| |. +.+.+ ++.|. .| ..+.
T Consensus 215 Ve~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~ 294 (995)
T PTZ00419 215 VEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIP 294 (995)
T ss_pred cccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccC
Confidence 00 11 00000 00000 00 0000
Q ss_pred --------cc---------------cccCccccccccc------------------------------------------
Q psy14486 177 --------NN---------------FKKDPLDFALWKV------------------------------------------ 191 (472)
Q Consensus 177 --------~~---------------~k~~~~df~lwk~------------------------------------------ 191 (472)
+. ..+++.||..++.
T Consensus 295 ~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g 374 (995)
T PTZ00419 295 DRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMG 374 (995)
T ss_pred CCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcC
Confidence 00 0011222221110
Q ss_pred ------------------c--------------------------CCC---------------------CCccccccCCC
Q psy14486 192 ------------------S--------------------------KNN---------------------DPYEIRWNSKW 206 (472)
Q Consensus 192 ------------------~--------------------------~~g---------------------~~~~~~w~~~w 206 (472)
. +.+ +-+++ +...|
T Consensus 375 ~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcIS-RQr~W 453 (995)
T PTZ00419 375 LLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCIS-RQLWW 453 (995)
T ss_pred CEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceee-eeccc
Confidence 0 000 00111 13469
Q ss_pred ccCCCCCcch-hh--------------------------------------------------Hhh-hhhhC--------
Q psy14486 207 GAGRPGWHIE-CS--------------------------------------------------AMS-CYLLG-------- 226 (472)
Q Consensus 207 G~g~PgWhie-cs--------------------------------------------------am~-~~~~g-------- 226 (472)
|.+.|.|+.+ |. +.+ ...+|
T Consensus 454 G~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~ 533 (995)
T PTZ00419 454 GHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDL 533 (995)
T ss_pred CceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHH
Confidence 9999998642 10 000 01123
Q ss_pred ---CCceEeeeccCCcCchhHHHHHHHhhccCC-CCceEEEeeeeEEe-cCccccccCCCccCHHHHHh-----------
Q psy14486 227 ---SHFDIHGGGQDLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVKI-NNKKMSKSFGNFCTIRDLLK----------- 290 (472)
Q Consensus 227 ---~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~~-~G~KMSKS~Gn~i~~~dll~----------- 290 (472)
.|.|+++.|.|++|++....++++.++.|. ||.+. +.||+|.- +|+|||||+||+|+|.++++
T Consensus 534 ~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v-~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~ 612 (995)
T PTZ00419 534 QRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTV-FLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKL 612 (995)
T ss_pred hhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHH-hccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhh
Confidence 267999999999998888887777777764 44455 55599985 89999999999999999999
Q ss_pred --------------------------hCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHhcCc----cc-
Q psy14486 291 --------------------------KYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKSLIRLYLAIKDIPK----IN- 338 (472)
Q Consensus 291 --------------------------~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~----~~- 338 (472)
+||+|++|||+++. +..++++|+.+.+....+.+++++|+++.+.. ..
T Consensus 613 ~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~ 692 (995)
T PTZ00419 613 YEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFN 692 (995)
T ss_pred hccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 89999999999986 78899999999999999999999998776421 00
Q ss_pred -cc---------cc---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHH--HHHHHHHH
Q psy14486 339 -YK---------KI---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLA--NIINKNKS 382 (472)
Q Consensus 339 -~~---------~~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~--~~~N~~~~ 382 (472)
.. .. .|. .+.+...+.++| ++|+++.|++.+++|+ ..+|.|++
T Consensus 693 ~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~-e~y~f~~A~~~i~~F~~~~~~n~Yie 755 (995)
T PTZ00419 693 LPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGF-KEYDFSEATQATYNFWLYELCDVYLE 755 (995)
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhhHHHHHH
Confidence 00 00 011 146778999999 8999999999999974 56788875
No 47
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=9.2e-34 Score=315.48 Aligned_cols=126 Identities=21% Similarity=0.161 Sum_probs=111.7
Q ss_pred ceEEEE--cCCCCCCc-CCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy14486 24 KVSLYV--CGITAYDY-CHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQE 100 (472)
Q Consensus 24 ~v~~y~--cgPt~~g~-lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 100 (472)
+.++|+ ..|+|+|. +||||+++++++|+++||.|++||+|.|++|+|+||.+|+..|.+.|.+|.+++.++++.|.+
T Consensus 109 k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~ 188 (963)
T PLN02563 109 KPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRS 188 (963)
T ss_pred CCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHH
Confidence 334444 56888896 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCccc-cCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc
Q psy14486 101 DSLLLHIQPPDYQP-CAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN 154 (472)
Q Consensus 101 ~l~~LgI~~d~~~~-r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~ 154 (472)
.|++||+.+|+-.. +++ +|...++.+|.+|+++|++|++ +..|+||+.|
T Consensus 189 q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~-----~~~v~wcp~~ 240 (963)
T PLN02563 189 QLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQA-----EVPVNWCPAL 240 (963)
T ss_pred HHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEee-----eeeeeecCCc
Confidence 99999999985322 223 7999999999999999999998 4678888765
No 48
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=100.00 E-value=1.9e-33 Score=281.16 Aligned_cols=283 Identities=17% Similarity=0.112 Sum_probs=189.5
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCccc------------------HHHHHHHHHcCC
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID------------------DKIIACAKKNNE 85 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d------------------~ki~~~a~~~g~ 85 (472)
..-++.||++|+|.+||||+|+++.+|+++|+||++|++|.|++++||+| .++...+.+.|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 34677889999999999999999999999999999999999999999995 455555666666
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCCccccCC-C-cH-HHHHHHHHHHHHCCCccccC--CC-ccCCcEEEec-ccccCc
Q psy14486 86 SIKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT-N-YI-PQILKMIEKLIFNGLAYQNN--NG-KINGDVNYSV-RNFLNY 158 (472)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s-~-~~-~~~~~~i~~L~~~G~~y~~~--~~-~~~g~v~f~~-~~~~~y 158 (472)
.+ +++++|.+.|.+.|+.|||++|.+ ++| . +. .....+...|.+++.+.+.- +. ++-..-|+.. .-|+.|
T Consensus 99 ~~-~~~d~~~~~f~~~l~~lgi~~d~~--~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~c 175 (353)
T cd00674 99 CE-SYAEHFERPFEESLEKLGIEVEFI--SQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKC 175 (353)
T ss_pred CH-HHHHHHHHHHHHHHHHcCCeeeee--ecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCc
Confidence 66 999999999999999999999955 344 2 22 35556677777888774321 00 0001223332 237889
Q ss_pred CcccCCCcccccc--CCCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeecc
Q psy14486 159 GKLSGRLISSNFN--KINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQ 236 (472)
Q Consensus 159 g~l~~~~~~~~~~--g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~ 236 (472)
|++. ..+.+... ++|...+. +...|+..+ .=|.|.-.|.++++ |-..++ .+|+.+.|+
T Consensus 176 g~~~-~~v~~~d~~~~~v~y~c~-----------cG~~g~~~~-----~~g~~KL~Wr~dW~-~rW~~l--~Vd~E~~Gk 235 (353)
T cd00674 176 GKDT-TTVEAYDAKAGTVTYKCE-----------CGHEETVDI-----RTGRGKLTWRVDWP-MRWAIL--GVDFEPFGK 235 (353)
T ss_pred Ccce-eEEEEEeCCCCeEEEEcC-----------CCCEEEEee-----cCCCcccCCCCCch-hhhhhc--CCCEEeeCc
Confidence 9764 32322211 12221110 111111000 00222222333333 222344 689999999
Q ss_pred CCcCchhHH--HHHHHh-hccCCCCceEEEeeeeEEecCc-cccccCCCccCHHHHHhhCChhhHHHHhhhcC-CCCCcc
Q psy14486 237 DLKFPHHEN--EIAQSE-GAYKHKFVNYWMHSGFVKINNK-KMSKSFGNFCTIRDLLKKYNPEVIRFFILRSH-YRSTIN 311 (472)
Q Consensus 237 Dl~fpH~~~--~~a~~~-a~~g~~~~~~~~h~g~l~~~G~-KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~-~~~~~~ 311 (472)
||.-+-... ..+++. ++ |.+.|.. +.+||++++|+ |||||+||+|+++|+++.++||++||++++.+ ..++++
T Consensus 236 Dh~~~ggs~~~~~~i~~~il-g~~~P~~-~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~ 313 (353)
T cd00674 236 DHASAGGSYDTGKEIAREIF-GGEPPVP-VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIG 313 (353)
T ss_pred cccccccHHHHHHHHHHHHh-CCCCCeE-EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCC
Confidence 998552112 222333 44 4444544 66699999877 99999999999999999999999999999987 888999
Q ss_pred cCHHHHHHHHHHHHHHHHHHH
Q psy14486 312 YSEIYLNYAKKSLIRLYLAIK 332 (472)
Q Consensus 312 fs~~~l~~~~~~~~r~~~~~~ 332 (472)
|+++ +......+.|+.+.+.
T Consensus 314 Fd~~-~~~~~dey~r~~~~y~ 333 (353)
T cd00674 314 FDLD-ILRLYDEYDRLERKYY 333 (353)
T ss_pred cChh-HHHHHHHHHHHHHHHc
Confidence 9984 5556666666666554
No 49
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=3.7e-33 Score=315.15 Aligned_cols=352 Identities=17% Similarity=0.240 Sum_probs=250.2
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHH-----cCCC------------
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKK-----NNES------------ 86 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~-----~g~~------------ 86 (472)
+..+..++|+|+|.+||||++++++.|+++||.|++||+|.|++|+|++|.++...+++ .|.+
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~ 208 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSE 208 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHH
Confidence 46777888999999999999999999999999999999999999999999999887754 3543
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccccc-------
Q psy14486 87 IKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFL------- 156 (472)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~------- 156 (472)
+++++++|.+.+.+.+++||++.|+-.++.| +|...++.+|.+|+++|++|++. ..|+||+.+-.
T Consensus 209 ~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~-----~~VnWcP~~~TaLSd~EV 283 (1066)
T PLN02381 209 VWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDI-----RLVNWDCTLRTAISDVEV 283 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEecc-----ccccCCCCCCCCccHHHh
Confidence 5688999999999999999999997544444 78999999999999999999984 44555544310
Q ss_pred --------------------------------------------------------------CcCcccCCCcc-------
Q psy14486 157 --------------------------------------------------------------NYGKLSGRLIS------- 167 (472)
Q Consensus 157 --------------------------------------------------------------~yg~l~~~~~~------- 167 (472)
.|..|.|....
T Consensus 284 ey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ 363 (1066)
T PLN02381 284 DYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRK 363 (1066)
T ss_pred hhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCE
Confidence 00000000000
Q ss_pred -cccc-C-CCCcc--------ccccCccccccccc---------------------------------------------
Q psy14486 168 -SNFN-K-INEKN--------NFKKDPLDFALWKV--------------------------------------------- 191 (472)
Q Consensus 168 -~~~~-g-~v~~~--------~~k~~~~df~lwk~--------------------------------------------- 191 (472)
.++. . .|+.+ ..-+++.||..++.
T Consensus 364 ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l 443 (1066)
T PLN02381 364 LPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLY 443 (1066)
T ss_pred EEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCE
Confidence 0000 0 00000 00011122221110
Q ss_pred ----------------c-----------------------------CCCC----Cc------------cccc----cCCC
Q psy14486 192 ----------------S-----------------------------KNND----PY------------EIRW----NSKW 206 (472)
Q Consensus 192 ----------------~-----------------------------~~g~----~~------------~~~w----~~~w 206 (472)
. ..+. |. +-.| ..-|
T Consensus 444 ~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~W 523 (1066)
T PLN02381 444 RGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWW 523 (1066)
T ss_pred ecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeeccc
Confidence 0 0010 00 0012 2369
Q ss_pred ccCCCCCcch--------hh--------H--------------------hh----------------hhhhC--------
Q psy14486 207 GAGRPGWHIE--------CS--------A--------------------MS----------------CYLLG-------- 226 (472)
Q Consensus 207 G~g~PgWhie--------cs--------a--------------------m~----------------~~~~g-------- 226 (472)
|.++|-|++. |. + +. ...+|
T Consensus 524 G~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~ 603 (1066)
T PLN02381 524 GHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDL 603 (1066)
T ss_pred CCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHH
Confidence 9999999862 00 0 00 01123
Q ss_pred ---CCceEeeeccCCcCchhHHHHHHHhhccC-CCCceEEEeeeeEE-ecCccccccCCCccCHHHHHh-----------
Q psy14486 227 ---SHFDIHGGGQDLKFPHHENEIAQSEGAYK-HKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLK----------- 290 (472)
Q Consensus 227 ---~~~dih~~G~Dl~fpH~~~~~a~~~a~~g-~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~----------- 290 (472)
.|.|+...|.|++|++....+.++.+++| .||.+..+ +|||. .+|+|||||+||+|+|.|+++
T Consensus 604 ~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~-hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~ 682 (1066)
T PLN02381 604 KAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYL-HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL 682 (1066)
T ss_pred hccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHhee-cceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhh
Confidence 26788999999999998888888887776 56666655 59998 689999999999999999998
Q ss_pred --------------------------hCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHhcCc-----cc
Q psy14486 291 --------------------------KYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKSLIRLYLAIKDIPK-----IN 338 (472)
Q Consensus 291 --------------------------~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~-----~~ 338 (472)
+||+|++|||+++. ....+++|+.+.+...++++++++|+++.+.. ..
T Consensus 683 ~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~ 762 (1066)
T PLN02381 683 EEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYT 762 (1066)
T ss_pred hccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 78999999999986 67789999999999999999999998875421 11
Q ss_pred cc-----cc---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHH--HHHHHHHH
Q psy14486 339 YK-----KI---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLA--NIINKNKS 382 (472)
Q Consensus 339 ~~-----~~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~--~~~N~~~~ 382 (472)
+. .. .|. .+.+..++.++| ++|++..|++.|++|+ ..+|.|++
T Consensus 763 ~~~~~~~~~~~~~DrWILskL~~~i~~v~~~~-e~y~F~~A~~~l~~F~~~dl~d~Yie 820 (1066)
T PLN02381 763 PPATLSVETMPFSCKWILSVLNKAISKTVSSL-DAYEFSDAASTVYSWWQYQFCDVFIE 820 (1066)
T ss_pred cccccCccccCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 11 00 111 146788999999 8999999999999984 56777775
No 50
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-32 Score=297.07 Aligned_cols=364 Identities=21% Similarity=0.254 Sum_probs=254.5
Q ss_pred cccccccCCC-Cc-eEEEEcCCCCC--CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHH
Q psy14486 13 KKQIFYPITP-GK-VSLYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIK 88 (472)
Q Consensus 13 ~~~~~~p~~~-~~-v~~y~cgPt~~--g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~ 88 (472)
+...|++..+ ++ -+.|++.|-|| |.+|+||.|+|+++|+++||.|++||+|.|.+|+|-.|.++++.|.+.|.+|.
T Consensus 20 e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~ 99 (814)
T COG0495 20 EAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPA 99 (814)
T ss_pred hcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChH
Confidence 3456776444 22 38888876666 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccccc---------
Q psy14486 89 TLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFL--------- 156 (472)
Q Consensus 89 ~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~--------- 156 (472)
.+++.+++.++++|++||.++|+-..-+| +|...++.+|.+|.++|++|.++ ..|-||+.+..
T Consensus 100 ~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~-----~~VnwcP~d~tvlaneqv~~ 174 (814)
T COG0495 100 KWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKE-----APVNWCPVDGTVLANEQVID 174 (814)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEecc-----ccceeCCCcCCccccceeec
Confidence 99999999999999999999998643334 89999999999999999999984 55666654310
Q ss_pred ----CcCc---------------------------cc----------------------------CC-------------
Q psy14486 157 ----NYGK---------------------------LS----------------------------GR------------- 164 (472)
Q Consensus 157 ----~yg~---------------------------l~----------------------------~~------------- 164 (472)
.||. |. +.
T Consensus 175 g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~ 254 (814)
T COG0495 175 GGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRP 254 (814)
T ss_pred CCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccC
Confidence 0010 00 00
Q ss_pred ---------------Cc-----cc--------cc---c--C---CCCccccc----------------------------
Q psy14486 165 ---------------LI-----SS--------NF---N--K---INEKNNFK---------------------------- 180 (472)
Q Consensus 165 ---------------~~-----~~--------~~---~--g---~v~~~~~k---------------------------- 180 (472)
.+ .. .. . | ++.....|
T Consensus 255 dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~ 334 (814)
T COG0495 255 DTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLM 334 (814)
T ss_pred ccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEEEeCcccc
Confidence 00 00 00 0 0 00000000
Q ss_pred ------------cCccccccccc---------cCCC-----------------------------------------CCc
Q psy14486 181 ------------KDPLDFALWKV---------SKNN-----------------------------------------DPY 198 (472)
Q Consensus 181 ------------~~~~df~lwk~---------~~~g-----------------------------------------~~~ 198 (472)
++.+||...+. ...+ ...
T Consensus 335 ~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~ 414 (814)
T COG0495 335 EYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWF 414 (814)
T ss_pred cccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEeccccccCcchhHHHHHHHHhHHHhcCCceE
Confidence 00001110000 0000 000
Q ss_pred cc----cc-c---CCCccCCCC--------------------------------------Ccc-hhhH---------hhh
Q psy14486 199 EI----RW-N---SKWGAGRPG--------------------------------------WHI-ECSA---------MSC 222 (472)
Q Consensus 199 ~~----~w-~---~~wG~g~Pg--------------------------------------Whi-ecsa---------m~~ 222 (472)
+. .| . -.||.+.|- |-+ .|+. |..
T Consensus 415 v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~ 494 (814)
T COG0495 415 VNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDT 494 (814)
T ss_pred EecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhH
Confidence 00 02 1 124444431 321 2321 110
Q ss_pred ---------h-----hhC------------CCceEeeeccCCcCchhHHHHHHHhhccC-------CCCceEEEeeeeEE
Q psy14486 223 ---------Y-----LLG------------SHFDIHGGGQDLKFPHHENEIAQSEGAYK-------HKFVNYWMHSGFVK 269 (472)
Q Consensus 223 ---------~-----~~g------------~~~dih~~G~Dl~fpH~~~~~a~~~a~~g-------~~~~~~~~h~g~l~ 269 (472)
+ +.| .|+|+.+||+||+--|..+.+.-..+++. .||.+ .+.+|||+
T Consensus 495 ~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~-L~~qGmVl 573 (814)
T COG0495 495 FIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKK-LITQGMVL 573 (814)
T ss_pred hcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhh-hhccceEE
Confidence 0 011 27999999999999999888887777762 34444 58899999
Q ss_pred e-cCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHhcCcc---cccc-c-
Q psy14486 270 I-NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKI---NYKK-I- 342 (472)
Q Consensus 270 ~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~~---~~~~-~- 342 (472)
. +|+|||||+||+|+|++++++||+|++|+|++.. +..++++|+++.++.+.+.++|+++++...... .... .
T Consensus 574 ~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~~~~~~~ 653 (814)
T COG0495 574 GEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQG 653 (814)
T ss_pred ecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhcccccccchhh
Confidence 9 7999999999999999999999999999999997 899999999999999999999999998875321 1110 0
Q ss_pred cCc---chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 343 IDL---NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 343 ~~~---~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
... ...+...+.+.++..+.+..|++.+++|++.+.+|..
T Consensus 654 ~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~ 696 (814)
T COG0495 654 KEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLR 696 (814)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 1466677777774338888999999999999998865
No 51
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=1.6e-31 Score=286.33 Aligned_cols=344 Identities=17% Similarity=0.142 Sum_probs=242.1
Q ss_pred cCCCcccccccCC--CCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHH---H--
Q psy14486 9 SFSRKKQIFYPIT--PGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACA---K-- 81 (472)
Q Consensus 9 t~~~~~~~~~p~~--~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a---~-- 81 (472)
+.++.++.|-+.. +++|.++.|+|||+|++||||+|+++++|+++|+|++.||+|.-...+.|+|.++-.-+ .
T Consensus 96 ~~~~~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~ 175 (566)
T TIGR00456 96 KILTQKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKF 175 (566)
T ss_pred HHHhcccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHh
Confidence 3344445554322 45899999999999999999999999999999999999999999999999876542111 0
Q ss_pred --------------------------------------H------cCCC-----HHHHHHHHHHHHHHHHHHhCCCCCCc
Q psy14486 82 --------------------------------------K------NNES-----IKTLTSRFIKAAQEDSLLLHIQPPDY 112 (472)
Q Consensus 82 --------------------------------------~------~g~~-----~~~~~~~~~~~~~~~l~~LgI~~d~~ 112 (472)
+ .|.+ ++.+++...+.|.+++++|||.+|.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~ 255 (566)
T TIGR00456 176 GNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSF 255 (566)
T ss_pred CCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeee
Confidence 0 1111 45667888999999999999999977
Q ss_pred cc-cCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCccccccccc
Q psy14486 113 QP-CATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKV 191 (472)
Q Consensus 113 ~~-r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df~lwk~ 191 (472)
+. ..+.+.+.+.++++.|.++|++|+ +|.+|++++.+ |. ++.|.++-|+
T Consensus 256 ~~E~e~~~~~~~~~v~~~L~~~g~~~~------~Ga~~~~~~~~---~d---------------------~~~~~vl~ks 305 (566)
T TIGR00456 256 VWEGESVKNGMVPKVLEDLKEKGLVVE------DGALWLDLTLF---GD---------------------KDKDRVLQKS 305 (566)
T ss_pred eccccccccccHHHHHHHHHHCCCEEE------cCCEEEEcccc---cC---------------------CCCCeEEEEC
Confidence 43 333455678999999999999996 48888876543 21 0012333332
Q ss_pred cCCCCCccccccCCCccCCCCCcchhhHhhhhhh-CCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEe
Q psy14486 192 SKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLL-GSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKI 270 (472)
Q Consensus 192 ~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~-g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~ 270 (472)
+|... +.+. ..++...++- |.+..|.+.|.|+. .|.....+.++++ |.+.+....|.+|.++
T Consensus 306 --DGt~~---Y~t~----------DiA~~~~k~~~~~d~iI~V~g~~q~-~h~~~v~~~l~~l-G~~~~~~l~h~~~~~V 368 (566)
T TIGR00456 306 --DGTYL---YLTR----------DIAYHLDKLERGFDKMIYVWGSDHH-LHIAQFFAILEKL-GFYKKKELIHLNFGMV 368 (566)
T ss_pred --CCCce---echh----------hHHHHHHHHhcCCCEEEEEecCcHH-HHHHHHHHHHHHc-CCCCCCceEEEEEEEE
Confidence 23221 0000 0011111111 33567889999964 2322333444554 6566666788899999
Q ss_pred cCccccccCCCccCHH-----------------------HHHhhCChhhHHHHhhhcCCCCCcccCHHHHHHHH------
Q psy14486 271 NNKKMSKSFGNFCTIR-----------------------DLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAK------ 321 (472)
Q Consensus 271 ~G~KMSKS~Gn~i~~~-----------------------dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~------ 321 (472)
+|.|||||+||+|+++ ++++.++.+++||++|+....++++|+++.+.+..
T Consensus 369 ~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~y 448 (566)
T TIGR00456 369 PLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPY 448 (566)
T ss_pred ECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchh
Confidence 9999999999999998 66666889999999999989999999999876653
Q ss_pred --HHHHHHHHHHHhcCcc-cc--cc---ccCc--------chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH---
Q psy14486 322 --KSLIRLYLAIKDIPKI-NY--KK---IIDL--------NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS--- 382 (472)
Q Consensus 322 --~~~~r~~~~~~~~~~~-~~--~~---~~~~--------~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~--- 382 (472)
+.+.|+.+++++.... .+ .. ..+. ...+.+.+.+++ +++++++++..++++++.+|+|++
T Consensus 449 iqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~l~~La~~~N~yy~~~~ 527 (566)
T TIGR00456 449 IQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNYLYELASLFSSFYKACP 527 (566)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 4689999998887421 11 00 0011 146778899999 899999999999999999999985
Q ss_pred -----------------HHHHHHHHHHHhhhcccc
Q psy14486 383 -----------------IKMAKQLRGLGNWLGLLE 400 (472)
Q Consensus 383 -----------------~~~~~~l~~~~~ilGi~~ 400 (472)
..+...|+..+.+|||..
T Consensus 528 Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~ 562 (566)
T TIGR00456 528 VLDAENENLAAARLALLKATRQTLKNGLQLLGIEP 562 (566)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 112345666677777754
No 52
>KOG1247|consensus
Probab=100.00 E-value=6.1e-33 Score=270.32 Aligned_cols=359 Identities=15% Similarity=0.131 Sum_probs=264.5
Q ss_pred ccccccCCCCceEEEEcCCCC--CCcCCccc-chHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHH
Q psy14486 14 KQIFYPITPGKVSLYVCGITA--YDYCHLGH-ARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTL 90 (472)
Q Consensus 14 ~~~~~p~~~~~v~~y~cgPt~--~g~lHiGh-ar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~ 90 (472)
+.|.-| .+++-.+.++..-| +..+|+|| ..+.+.||+++||.+.+|++..|++|+|+++.+++.+|.++|.+|+++
T Consensus 4 ~~~ilp-~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~el 82 (567)
T KOG1247|consen 4 KDPILP-APNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQEL 82 (567)
T ss_pred CCCccc-CCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHH
Confidence 445556 35677777777544 59999999 669999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc------------cc
Q psy14486 91 TSRFIKAAQEDSLLLHIQPPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN------------FL 156 (472)
Q Consensus 91 ~~~~~~~~~~~l~~LgI~~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~------------~~ 156 (472)
+++|+..+...+++++|++|.+ .|+| .+.+..+.+|.+|.++|+.-+.. -.+.||..+ ||
T Consensus 83 cdKyh~ihk~vy~Wf~IdfD~f-grtTT~~qT~i~Q~iF~kl~~ng~~se~t-----v~qLyC~vc~~fladr~veg~cp 156 (567)
T KOG1247|consen 83 CDKYHGIHKVVYDWFKIDFDEF-GRTTTKTQTEICQDIFSKLYDNGYLSEQT-----VKQLYCEVCDTFLADRFVEGKCP 156 (567)
T ss_pred HHhcchhHHHHHHhhccccccc-CcccCcchhHHHHHHhhchhhcCCcccce-----eeeEEehhhcccccchhhhccCC
Confidence 9999999999999999999988 5555 56789999999999999998763 456777543 33
Q ss_pred C-------------cCcccCC-Cccccc-----cC-CC--------Cccc--------cccCc--ccc--------cccc
Q psy14486 157 N-------------YGKLSGR-LISSNF-----NK-IN--------EKNN--------FKKDP--LDF--------ALWK 190 (472)
Q Consensus 157 ~-------------yg~l~~~-~~~~~~-----~g-~v--------~~~~--------~k~~~--~df--------~lwk 190 (472)
. ||++.+. ++-... ++ .+ +.+. .+++. .++ ..|.
T Consensus 157 ~C~yd~ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWl 236 (567)
T KOG1247|consen 157 FCGYDDARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWL 236 (567)
T ss_pred CCCCccccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHH
Confidence 3 3333211 000000 01 00 0000 00100 010 1122
Q ss_pred ccCCCC-CccccccCCCccCCCC----------Ccch---h-------hHhhhhhhCCCc---eEeeeccCCcCchhHHH
Q psy14486 191 VSKNND-PYEIRWNSKWGAGRPG----------WHIE---C-------SAMSCYLLGSHF---DIHGGGQDLKFPHHENE 246 (472)
Q Consensus 191 ~~~~g~-~~~~~w~~~wG~g~Pg----------Whie---c-------sam~~~~~g~~~---dih~~G~Dl~fpH~~~~ 246 (472)
+.|. |..++.|..||.+.|= |+.. . ..-+.+++..|. -.+++|+|++-||+...
T Consensus 237 --k~gl~pRCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviF 314 (567)
T KOG1247|consen 237 --KDGLKPRCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIF 314 (567)
T ss_pred --HccccccccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeec
Confidence 2332 3223389999999992 6421 1 122334554443 47899999999999999
Q ss_pred HHHHhhcc-CCCCceEEEeeeeEEecCccccccCCCccCHHHHHh-hCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHH
Q psy14486 247 IAQSEGAY-KHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKS 323 (472)
Q Consensus 247 ~a~~~a~~-g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~ 323 (472)
|+...+.. +.+..++...+++++.+.+|+|||+|..|...++.+ ..+++..|||||+. |..++..|||+.+....|+
T Consensus 315 P~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~ns 394 (567)
T KOG1247|consen 315 PCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNS 394 (567)
T ss_pred chhhhcCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhH
Confidence 99877654 367778888899999999999999999999988876 58999999999997 8999999999999888764
Q ss_pred --HHHHHHHHHhc--------Ccccccccc---Cc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 324 --LIRLYLAIKDI--------PKINYKKII---DL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 324 --~~r~~~~~~~~--------~~~~~~~~~---~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
++++-||+.++ .+..|.-.. +. .+++..++.++| +......|+..++++.+..|.|++
T Consensus 395 eLl~NLGNFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~~m~is~~GNqylQ 470 (567)
T KOG1247|consen 395 ELLNNLGNFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAM-EKVKLREALKTAMEISRRGNQYLQ 470 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHh
Confidence 56666655543 223332111 11 156677888999 899999999999999999999987
No 53
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-31 Score=283.04 Aligned_cols=286 Identities=16% Similarity=0.093 Sum_probs=194.3
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccH--HH-------HHHHHHcCCC--------
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDD--KI-------IACAKKNNES-------- 86 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~--ki-------~~~a~~~g~~-------- 86 (472)
..-++.||++|+|.+||||+|+++.+|+++|+||.+|++|.+++++||+|. || ...++..|++
T Consensus 23 ~~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~ 102 (510)
T PRK00750 23 PPVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPF 102 (510)
T ss_pred CcEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCC
Confidence 347889999999999999999999999999999999999999999999985 44 2345555665
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCCCCccccCCC--cHHHHH-HHHHHHHHCCCccccC--CC-ccCCcEEEec-ccccC
Q psy14486 87 --IKTLTSRFIKAAQEDSLLLHIQPPDYQPCATN--YIPQIL-KMIEKLIFNGLAYQNN--NG-KINGDVNYSV-RNFLN 157 (472)
Q Consensus 87 --~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~--~~~~~~-~~i~~L~~~G~~y~~~--~~-~~~g~v~f~~-~~~~~ 157 (472)
+++++++|.+.|.+.++.|||.++.+ ++|+ +...+. .+...|.+++.+.+.- +. +.-..-|+.. .-|+.
T Consensus 103 G~~~~~~~~~~~~~~~~~~~~gi~~d~~--~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~ 180 (510)
T PRK00750 103 GCHESYAEHFNAPLREFLDRFGIEYEFI--SATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPK 180 (510)
T ss_pred CCchHHHHHHHHHHHHHHHHcCCceEEE--ehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCC
Confidence 89999999999999999999999855 3332 222232 2333344444442210 00 0001124332 23788
Q ss_pred cCcccCCCccccc--cCCCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeec
Q psy14486 158 YGKLSGRLISSNF--NKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGG 235 (472)
Q Consensus 158 yg~l~~~~~~~~~--~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G 235 (472)
||++....+.+.. .|+|...+ ++...|+..++ =|.|.-.|.++++ |-+.++ .+|+.+.|
T Consensus 181 cg~~~~~~~~~~d~~~~~v~y~~-----------~cG~~~~~~~~-----~g~~KL~Wr~dW~-~rW~~l--~Vd~e~~G 241 (510)
T PRK00750 181 CGKVLTTPVISYDAEAGTVTYDC-----------ECGHEGEVPVT-----GGHGKLQWKVDWP-MRWAAL--GVDFEPFG 241 (510)
T ss_pred CCccceEEEEEEeCCCCEEEEEc-----------CCCCEEEEecC-----CCCcccCCCCCcH-HHHHHc--CCCEEeeC
Confidence 9997654432221 11222110 01111111000 0222223444443 333445 68999999
Q ss_pred cCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEec-CccccccCCCccCHHHHHhhCChhhHHHHhhh-cCCCCCcccC
Q psy14486 236 QDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKIN-NKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR-SHYRSTINYS 313 (472)
Q Consensus 236 ~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~-G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs 313 (472)
+||.-+++.....++..+.|.++|.. +|+||++.+ |+|||||+||+|++.|+++.++|+++|||++. .++.++++|+
T Consensus 242 kDh~~~s~~~~~~i~~~ilg~~~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~ 320 (510)
T PRK00750 242 KDHASASYDTSKKIAREILGGEPPEP-FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFD 320 (510)
T ss_pred cccCcchHHHHHHHHHHHcCCCCCee-eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCccc
Confidence 99998544444455552335444544 778999998 99999999999999999999999999987775 5899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy14486 314 EIYLNYAKKSLIRLYLAIKD 333 (472)
Q Consensus 314 ~~~l~~~~~~~~r~~~~~~~ 333 (472)
+ +..+.+.+.|+.+.+..
T Consensus 321 ~--l~~~~dey~rl~~~~~~ 338 (510)
T PRK00750 321 V--IPKLVDEYDRFERKYFG 338 (510)
T ss_pred H--HHHHHHHHHHHHHHHhc
Confidence 9 88999999999888764
No 54
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.98 E-value=8.4e-31 Score=296.81 Aligned_cols=153 Identities=19% Similarity=0.277 Sum_probs=121.9
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCC-CCceEEEeeeeEEe-cCccccccCCCccCHHHHHhhCChhhHHHHhhhc-
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVKI-NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS- 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~~-~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~- 304 (472)
|.|+..-|.|+++.|.......+.+++|. ||.+. +.|||++. +|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 673 PaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~V-lvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~ 751 (1205)
T PTZ00427 673 PADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNL-ICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSV 751 (1205)
T ss_pred CceEEEEecchhccHHHHHHHHHHHhcCCCCccee-EEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcC
Confidence 57888999999999999999999999985 44554 55699985 9999999999999999999999999999999986
Q ss_pred C-CCCCcccCHHHHHH-HHHHHHHHHHHHHhcCcc-c-----------cc-----cc---cCc-----chhHHHHHHHHH
Q psy14486 305 H-YRSTINYSEIYLNY-AKKSLIRLYLAIKDIPKI-N-----------YK-----KI---IDL-----NEPHAKRFIIAM 357 (472)
Q Consensus 305 ~-~~~~~~fs~~~l~~-~~~~~~r~~~~~~~~~~~-~-----------~~-----~~---~~~-----~~~~~~~~~~al 357 (472)
. ..++++|+++.+.+ .++.+.++++..+.+... . +. .. .|. .+.+...+.++|
T Consensus 752 ~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~m 831 (1205)
T PTZ00427 752 AVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEM 831 (1205)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 46899999999865 556677888765543210 0 00 00 011 146788999999
Q ss_pred HhccChhHHHHHHHHHHH-HHHHHHH
Q psy14486 358 NDDFNTPVAISILFDLAN-IINKNKS 382 (472)
Q Consensus 358 ~dd~n~~~al~~l~~l~~-~~N~~~~ 382 (472)
++|+++.|+..|++++. ..|.|+.
T Consensus 832 -e~Y~f~~A~~~i~~Fi~~lsnwYIe 856 (1205)
T PTZ00427 832 -KAYKLYNVLPKLLQFIENLTNWYIR 856 (1205)
T ss_pred -HccCHHHHHHHHHHHHHHhccHHHH
Confidence 89999999999999997 5666765
No 55
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=2.7e-29 Score=268.37 Aligned_cols=329 Identities=14% Similarity=0.124 Sum_probs=236.6
Q ss_pred CCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHH---HHc---------------
Q psy14486 22 PGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACA---KKN--------------- 83 (472)
Q Consensus 22 ~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a---~~~--------------- 83 (472)
+++|.|-.++|+|.||+||||+|+.+++|+|+|.|++.||+|.-...+.|+|.++-.-+ .+.
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELF 191 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHH
Confidence 56899999999999999999999999999999999999999999999999986542111 111
Q ss_pred -----------------------------CCC-----HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHH
Q psy14486 84 -----------------------------NES-----IKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEK 129 (472)
Q Consensus 84 -----------------------------g~~-----~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~ 129 (472)
|.+ |+.+++...+.|.+++++|||.+|.+ ...|.+.+.+.++++.
T Consensus 192 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~-~~es~~~~~~~~v~~~ 270 (562)
T PRK12451 192 KLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNF-QGEAFYNDLMEDFIGI 270 (562)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceee-cchHhhhhhHHHHHHH
Confidence 111 45667788899999999999999955 4667777888999999
Q ss_pred HHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCccccccccccCCCCCccccccCCCccC
Q psy14486 130 LIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAG 209 (472)
Q Consensus 130 L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g 209 (472)
|.++|++|+. +|.+|++++.+ |. .|.++-|+ +|... +.++
T Consensus 271 L~~~g~~~e~-----dGa~~~~~~~~---g~-----------------------~~~vl~ks--DGt~~---Y~t~---- 310 (562)
T PRK12451 271 LEEHDLLEES-----EGALVVNLEEE---GM-----------------------PPCLIRKS--DGATI---YATR---- 310 (562)
T ss_pred HHHCCCEEec-----CCeEEEEeccc---CC-----------------------CceEEEeC--CCccc---cchh----
Confidence 9999999987 69998876433 21 02222221 22211 0000
Q ss_pred CCCCcchhhHhhhhh--hCCCceEeeeccCCcCchhHHHHHHHhhccCCCCce-E-EEeeeeEEecCccccccCCCccCH
Q psy14486 210 RPGWHIECSAMSCYL--LGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVN-Y-WMHSGFVKINNKKMSKSFGNFCTI 285 (472)
Q Consensus 210 ~PgWhiecsam~~~~--~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~-~-~~h~g~l~~~G~KMSKS~Gn~i~~ 285 (472)
..++...++ +|....|.+.|.|+. .|.....+.+.++ |..++. . ++..|+|+.+|+||||+.|++|++
T Consensus 311 ------DiA~~~~k~~~~~~d~~IyV~g~dq~-~h~~~l~~~~~~l-g~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l 382 (562)
T PRK12451 311 ------DLTAALYRQNTFGFDKALYVVGPEQS-LHFNQFFTVLKKL-GYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLL 382 (562)
T ss_pred ------HHHHHHHHhhccCCCEEEEEeCCcHH-HHHHHHHHHHHHc-CCCcccCeEEEeeeeEecCCCCCcCCCCCeeEH
Confidence 001111122 344567899999964 2222222333443 533322 2 355688988999999999999999
Q ss_pred HHHHhh-------------------------CChhhHHHHhhhcCCCCCcccCHHHHHHHH--------HHHHHHHHHHH
Q psy14486 286 RDLLKK-------------------------YNPEVIRFFILRSHYRSTINYSEIYLNYAK--------KSLIRLYLAIK 332 (472)
Q Consensus 286 ~dll~~-------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~--------~~~~r~~~~~~ 332 (472)
+||+++ .+.+++||++|+.+..++++|+|+.+.... .++.|++++++
T Consensus 383 ~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlr 462 (562)
T PRK12451 383 EEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILR 462 (562)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHH
Confidence 999996 678999999999999999999999976554 36899999999
Q ss_pred hcCcc-c-ccccc-Cc--------chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH------------------H
Q psy14486 333 DIPKI-N-YKKII-DL--------NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS------------------I 383 (472)
Q Consensus 333 ~~~~~-~-~~~~~-~~--------~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~------------------~ 383 (472)
+.... . ..... +. ...+.+.+.+++ +++++++++..++++++.+|+|++ .
T Consensus 463 ka~~~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl~~~~~~~~RL~L~~ 541 (562)
T PRK12451 463 KESVEFETCTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKYVLDVAQSFNKYYGNVRILEESAEKDSRLALVY 541 (562)
T ss_pred hcCCCccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 87421 1 00000 11 146788899999 899999999999999999999986 1
Q ss_pred HHHHHHHHHHhhhcccc
Q psy14486 384 KMAKQLRGLGNWLGLLE 400 (472)
Q Consensus 384 ~~~~~l~~~~~ilGi~~ 400 (472)
.+...|...+.+|||..
T Consensus 542 a~~~vL~~gL~LLGI~~ 558 (562)
T PRK12451 542 AVTVVLKEGLRLLGVEA 558 (562)
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 12346666677777754
No 56
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.97 E-value=2.7e-30 Score=270.31 Aligned_cols=275 Identities=16% Similarity=0.195 Sum_probs=186.0
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcc------------------cHHHHHHHHHcCC
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDI------------------DDKIIACAKKNNE 85 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~------------------d~ki~~~a~~~g~ 85 (472)
..-++.||-+|+|.+||||+|.++.+|+++|++|.+|++|.+|++.||+ |.++...+...|.
T Consensus 18 ~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 18 NLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred CeEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 3577889999999999999999999999999999999999999999999 4444455555666
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCCccccCCC----------------cHHHHHHHHHHHHHCCCccccCCCccCCcEE
Q psy14486 86 SIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATN----------------YIPQILKMIEKLIFNGLAYQNNNGKINGDVN 149 (472)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~----------------~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~ 149 (472)
. .+++++|...|.+.|..|||.+..+ ++|+ +.+.|.+++...... +.. ++-..
T Consensus 98 ~-~s~~~h~~~~~~~~l~~~gi~~e~~--s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~----~~~----~~~~P 166 (515)
T TIGR00467 98 K-TSYAEHFLIPFLESLPVLGINPEFI--RASKQYTSGLYASQIKIALDHRKEISEILNEYRTS----KLE----ENWYP 166 (515)
T ss_pred c-HHHHHHHHHHHHHHHHHcCCeEEEE--EHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCC----ccC----CCcee
Confidence 4 9999999999999999999988654 4442 222222222222111 111 23223
Q ss_pred EecccccCcCcccCCCccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCC
Q psy14486 150 YSVRNFLNYGKLSGRLISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSH 228 (472)
Q Consensus 150 f~~~~~~~yg~l~~~~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~ 228 (472)
|. .-|+.||++.. .+.+.... +| .|.. ++...|+.. ..=|.|.-.|.++++ |-+..| +
T Consensus 167 ~~-pic~~cGrv~~-~~~~~~~~~~v----------~Y~c-~cG~~g~~~-----~~~g~~KL~WkvdW~-~RW~~l--g 225 (515)
T TIGR00467 167 IS-VFCENCGRDTT-TVNNYDNEYSI----------EYSC-ECGNQESVD-----IYTGAIKLPWRVDWP-ARWKIE--K 225 (515)
T ss_pred ee-eecCCcCccCc-eEEEecCCceE----------EEEc-CCCCEEEEe-----ecCCCcccCCCCCcH-hhHhhh--C
Confidence 32 33789999754 22222111 11 1110 011111110 001222223444443 323444 6
Q ss_pred ceEeeeccCCcCch----hHHHHHHHhhccCCCCceEEEeeeeEEe--cCccccccCCCccCHHHHHhhCChhhHHHHhh
Q psy14486 229 FDIHGGGQDLKFPH----HENEIAQSEGAYKHKFVNYWMHSGFVKI--NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302 (472)
Q Consensus 229 ~dih~~G~Dl~fpH----~~~~~a~~~a~~g~~~~~~~~h~g~l~~--~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll 302 (472)
+|+...|+||.-+- ....+|+ ++++|.|+.. +.++|+.+ +|+|||||+||+|+++|+++.++|+++||+++
T Consensus 226 V~~Ep~GkDH~~~ggsy~~~~~ia~-~~l~~~~P~~--~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l 302 (515)
T TIGR00467 226 VTFEPAGKDHAAAGGSYDTGVNIAK-EIFQYSPPVT--VQYEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFA 302 (515)
T ss_pred cccccCCCCccCccCCchhHHHHHH-HHhCCCCCcC--cEEEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHh
Confidence 89999999987654 3344555 5665554332 22355544 56799999999999999999999999999999
Q ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHhc
Q psy14486 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIKDI 334 (472)
Q Consensus 303 ~~~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~ 334 (472)
+.+++++++|+++.+ ++...+.|+.+.+...
T Consensus 303 ~~~~~~~ldFd~~~l-~~~dey~r~~~~~~~~ 333 (515)
T TIGR00467 303 RTKPEFHISFDLDVI-KLYEDYDKFERFYYGV 333 (515)
T ss_pred ccCCCCCCcCCHHHH-HHHHHHHHHHHHHHhh
Confidence 999999999999988 9999999998877653
No 57
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.97 E-value=1.1e-29 Score=240.10 Aligned_cols=207 Identities=22% Similarity=0.174 Sum_probs=159.3
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
+|.+-.++|||+|++||||+|+++++|+|+|+|++.||+|.+++++||+|+||+..|.+.+ .|+++++.+.+.|.++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYG 79 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999997764 499999999999999999
Q ss_pred HhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCc
Q psy14486 104 LLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDP 183 (472)
Q Consensus 104 ~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~ 183 (472)
+|||.+|.+ +++|++++.++++++.|.++|++|+. +|.+||+++++...
T Consensus 80 ~L~i~~d~~-~~es~~~~~~~~~i~~L~~~g~~~~~-----~g~~~~~~~~~~~~------------------------- 128 (212)
T cd00671 80 RLDVRFDVW-FGESSYLGLMGKVVELLEELGLLYEE-----DGALWLDLTEFGDD------------------------- 128 (212)
T ss_pred HhCCcCcee-cchhhhhhHHHHHHHHHHHCCCEEEe-----CCcEEEechhhCCC-------------------------
Confidence 999999876 68888899999999999999999988 69999998765211
Q ss_pred cccccccccCCCCCccccccCCCccCCCCCcch-hhHhhhh-hhCCCceEeeeccCCcCchhHHHHHHHhhccCCC-Cce
Q psy14486 184 LDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIE-CSAMSCY-LLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHK-FVN 260 (472)
Q Consensus 184 ~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhie-csam~~~-~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~-~~~ 260 (472)
.|+++.|+ +|.+. ++.- .++...+ -++.+..|.+.|.|+. .|.....+.++++ |.+ .++
T Consensus 129 ~d~vl~rs--dG~~~--------------Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~-~~~~~~~~~~~~l-g~~~~~~ 190 (212)
T cd00671 129 KDRVLVRS--DGTYT--------------YFTRDIAYHLDKFERGADKIIYVVGADHH-GHFKRLFAALELL-GYDEAKK 190 (212)
T ss_pred CCeEEEEC--CCCcc--------------chHHHHHHHHHHHhcCCCEEEEEECCCHH-HHHHHHHHHHHHc-CCCCCCC
Confidence 14555543 34332 2210 1111111 1344556889999976 4444444555555 433 333
Q ss_pred E-EEeeeeEEec-CccccccCC
Q psy14486 261 Y-WMHSGFVKIN-NKKMSKSFG 280 (472)
Q Consensus 261 ~-~~h~g~l~~~-G~KMSKS~G 280 (472)
+ ++..|+|+.. |+||||+.|
T Consensus 191 ~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 191 LEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred eEEEEEEeEEcCCCCCCCCCCC
Confidence 3 2334899877 999999987
No 58
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.7e-28 Score=257.80 Aligned_cols=332 Identities=18% Similarity=0.177 Sum_probs=237.2
Q ss_pred CCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHH---------------------
Q psy14486 21 TPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIAC--------------------- 79 (472)
Q Consensus 21 ~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~--------------------- 79 (472)
.+++|.+-.++|+|+||+||||+|++|++|+|+|.|++.||+|.-...+.|+|.++-.-
T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~ 194 (577)
T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY 194 (577)
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchH
Confidence 35699999999999999999999999999999999999999999999999997654211
Q ss_pred -----------HHH-cCC--C------------------HHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcHHHHHHH
Q psy14486 80 -----------AKK-NNE--S------------------IKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT-NYIPQILKM 126 (472)
Q Consensus 80 -----------a~~-~g~--~------------------~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s-~~~~~~~~~ 126 (472)
+.+ .+. . |+.+++...+.|.+++.+|||.+|.++...+ .+...+.++
T Consensus 195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~v 274 (577)
T COG0018 195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKV 274 (577)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHH
Confidence 111 110 0 2337788889999999999999999853222 344579999
Q ss_pred HHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCccccccccccCCCCCccccccCCC
Q psy14486 127 IEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKW 206 (472)
Q Consensus 127 i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~w 206 (472)
++.|.++|++|+. +|..+.+..++..+|.. .+.++-|+ +|-.. +-++
T Consensus 275 v~~L~~~~~~~e~-----~GA~~vdl~~~~~~gd~----------------------~~~vl~KS--DGt~l---Y~t~- 321 (577)
T COG0018 275 VEDLEEKGLLYED-----DGALVVDLLKFKKFGDD----------------------KDRVLQKS--DGTYL---YFTR- 321 (577)
T ss_pred HHHHHhcCCEeee-----CCeEEEehhhhhhcCCC----------------------CCeEEEEc--CCCee---eehh-
Confidence 9999999999997 69998888776544431 12332222 22111 0000
Q ss_pred ccCCCCCcchhhHhhhhh-hCCCceEeeeccCCcCchhHHHHHHHhh---ccCCCCc-eEEEeeeeEEe---cCcccccc
Q psy14486 207 GAGRPGWHIECSAMSCYL-LGSHFDIHGGGQDLKFPHHENEIAQSEG---AYKHKFV-NYWMHSGFVKI---NNKKMSKS 278 (472)
Q Consensus 207 G~g~PgWhiecsam~~~~-~g~~~dih~~G~Dl~fpH~~~~~a~~~a---~~g~~~~-~~~~h~g~l~~---~G~KMSKS 278 (472)
.-+....++ .|....|.+.|.|+. .. .+|..+ .-|..++ ...+|.++-++ +|.||||+
T Consensus 322 ---------DIAy~~~K~~~~~d~~IyV~gadq~----~~-~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR 387 (577)
T COG0018 322 ---------DIAYHLYKFERGFDKLIYVLGADQH----GH-FKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTR 387 (577)
T ss_pred ---------HHHHHHHHHhcCCCEEEEEeCCcch----hH-HHHHHHHHHHhcCCCccceEEEEEEeeeECCCCcccccc
Confidence 001111222 455667999999964 22 222222 1244444 35566555443 56799999
Q ss_pred CCCccCHHHHHhhCC----------------------hhhHHHHhhhcCCCCCcccCHHHHHHHHH--------HHHHHH
Q psy14486 279 FGNFCTIRDLLKKYN----------------------PEVIRFFILRSHYRSTINYSEIYLNYAKK--------SLIRLY 328 (472)
Q Consensus 279 ~Gn~i~~~dll~~~~----------------------~d~lR~~ll~~~~~~~~~fs~~~l~~~~~--------~~~r~~ 328 (472)
.|++|+++|++++.+ .+++||++++.+..++++|+|+.+.+... ++.|++
T Consensus 388 ~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~ 467 (577)
T COG0018 388 AGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARIC 467 (577)
T ss_pred CCceEEHHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHH
Confidence 999999999999877 99999999999999999999999887654 689999
Q ss_pred HHHHhcCcc--cccc----cc--Ccc-------hhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH---------H-
Q psy14486 329 LAIKDIPKI--NYKK----II--DLN-------EPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS---------I- 383 (472)
Q Consensus 329 ~~~~~~~~~--~~~~----~~--~~~-------~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~---------~- 383 (472)
+++++.... .... .. ..+ ..++..+.+|. +++.++..+.+|++|++.+|+|++ .
T Consensus 468 SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa-~~~~Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~~~~ 546 (577)
T COG0018 468 SILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAA-EELEPHRLANYLYDLAGSFNSFYNACPVLGAENEE 546 (577)
T ss_pred HHHHhccccccccccccchhccChHHHHHHHHHHHhHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHhhCCcCCCCcHH
Confidence 999988632 1100 11 101 36677778887 899999999999999999999986 1
Q ss_pred ----------HHHHHHHHHHhhhcccc
Q psy14486 384 ----------KMAKQLRGLGNWLGLLE 400 (472)
Q Consensus 384 ----------~~~~~l~~~~~ilGi~~ 400 (472)
.+...|+..+.+|||..
T Consensus 547 ~~~aRL~L~~a~~~vL~ngL~LLGI~~ 573 (577)
T COG0018 547 LRAARLALVKATRQVLKNGLDLLGIEA 573 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 12246667778888854
No 59
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.1e-29 Score=271.33 Aligned_cols=152 Identities=18% Similarity=0.279 Sum_probs=121.5
Q ss_pred eEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCC
Q psy14486 230 DIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRS 308 (472)
Q Consensus 230 dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~ 308 (472)
|+..-|.|...-+.--....+.|++|.++-+..+.+||++ -+|+|||||+||+|+|.|++++||+|+||+|+++++|..
T Consensus 557 D~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~~ 636 (933)
T COG0060 557 DFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWE 636 (933)
T ss_pred cEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCchh
Confidence 6777788887655555556667777865554556669988 689999999999999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHhcCc----cccccc---------cCc-----chhHHHHHHHHHHhccChhHHHHHH
Q psy14486 309 TINYSEIYLNYAKKSLIRLYLAIKDIPK----INYKKI---------IDL-----NEPHAKRFIIAMNDDFNTPVAISIL 370 (472)
Q Consensus 309 ~~~fs~~~l~~~~~~~~r~~~~~~~~~~----~~~~~~---------~~~-----~~~~~~~~~~al~dd~n~~~al~~l 370 (472)
++.||++.+++....+++|+|.++.+.. ..+... .|. .+.+..++.++| ++|++++++..|
T Consensus 637 dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eay-e~y~f~~v~~~l 715 (933)
T COG0060 637 DLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAY-ENYDFHKVVRAL 715 (933)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHH
Confidence 9999999999999999999998876522 222210 111 157788999999 999999999999
Q ss_pred HHHH-HHHH-HHHH
Q psy14486 371 FDLA-NIIN-KNKS 382 (472)
Q Consensus 371 ~~l~-~~~N-~~~~ 382 (472)
++|+ ..++ -|++
T Consensus 716 ~~F~~~dLS~~Yld 729 (933)
T COG0060 716 MNFVSEDLSNWYLD 729 (933)
T ss_pred HHHHHhhhhHHHHH
Confidence 9999 5554 4554
No 60
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.96 E-value=1.9e-29 Score=272.50 Aligned_cols=127 Identities=22% Similarity=0.199 Sum_probs=103.4
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHc-CC----------------
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN-NE---------------- 85 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~-g~---------------- 85 (472)
++..+..++|+++|.+|+||++++++.|+++||.|++|++|.++.|+|.+|.+|+..+++. |.
T Consensus 23 ~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~ 102 (601)
T PF00133_consen 23 PKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFRE 102 (601)
T ss_dssp GEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHH
T ss_pred CcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchh
Confidence 3566777788888999999999999999999999999999999999999999999988764 43
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc
Q psy14486 86 SIKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN 154 (472)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~ 154 (472)
.++++++.+.+.+.+++++||+..|+-.+..| .+.+.++..|.+|.++|++|++. ..|+||+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~-----~pv~w~p~~ 169 (601)
T PF00133_consen 103 ECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK-----KPVNWCPSC 169 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE-----EEEEEETTT
T ss_pred hhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC-----CCCCcCccc
Confidence 27899999999999999999999886644444 68889999999999999999984 667888765
No 61
>PLN02959 aminoacyl-tRNA ligase
Probab=99.96 E-value=1.3e-27 Score=270.95 Aligned_cols=146 Identities=20% Similarity=0.229 Sum_probs=116.3
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccC-CCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-C
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYK-HKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-H 305 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g-~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~ 305 (472)
|+|+.+.|.|+++.|....+..+.++++ .||++.++++|||+.+|+|||||+||+|+|.|++++||+|++|||++++ +
T Consensus 671 P~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~ 750 (1084)
T PLN02959 671 PFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGD 750 (1084)
T ss_pred CCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCC
Confidence 6899999999999999998888888876 6888888899999999999999999999999999999999999999987 7
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHhcCcc----cc-c--cccCc-----chhHHHHHHHHHHhccChhHHHHHH-HH
Q psy14486 306 YRSTINYSEIYLNYAKKSLIRLYLAIKDIPKI----NY-K--KIIDL-----NEPHAKRFIIAMNDDFNTPVAISIL-FD 372 (472)
Q Consensus 306 ~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~~----~~-~--~~~~~-----~~~~~~~~~~al~dd~n~~~al~~l-~~ 372 (472)
+.++++|+++.+..+...+.+...++...... .+ . ...|. .+.+..++.++| +++++..|++.. ++
T Consensus 751 ~~~D~nF~~k~~n~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~~~Ye 829 (1084)
T PLN02959 751 GVDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKSGFYD 829 (1084)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHH
Confidence 88999999998877666655544433322100 01 0 00111 256788999999 899999999984 43
Q ss_pred HH
Q psy14486 373 LA 374 (472)
Q Consensus 373 l~ 374 (472)
|.
T Consensus 830 l~ 831 (1084)
T PLN02959 830 LQ 831 (1084)
T ss_pred HH
Confidence 43
No 62
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.96 E-value=9.1e-29 Score=259.31 Aligned_cols=259 Identities=22% Similarity=0.223 Sum_probs=200.8
Q ss_pred CCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy14486 22 PGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQED 101 (472)
Q Consensus 22 ~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 101 (472)
+|+|.+. |+|+|||++||||||++++.+.++|. |+..++.++||.|++| .+. ...+.+.|.++
T Consensus 99 ~g~V~tR-FaPsPtG~LHIGharaalln~~~Ar~-----~~G~~iLRidDTDpk~-~R~----------~~e~~~~I~ed 161 (567)
T PRK04156 99 KGKVVMR-FAPNPSGPLHLGHARAAILNDEYAKM-----YGGKFILRFEDTDPRT-KRP----------DPEAYDMILED 161 (567)
T ss_pred CCeEEEE-eCCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEeEccCCCCc-ccc----------hHHHHHHHHHH
Confidence 5678888 99999999999999999999999994 8999999999999876 221 33666999999
Q ss_pred HHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc----ccCcCcccC-C--Cc-------c
Q psy14486 102 SLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN----FLNYGKLSG-R--LI-------S 167 (472)
Q Consensus 102 l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~----~~~yg~l~~-~--~~-------~ 167 (472)
|++||+.+|.. +++|+|.+.+.+++++|+++|+||. |||... ....|..|. + .. +
T Consensus 162 L~wLGl~wD~~-~~qSdr~~~y~~~a~~Li~~G~AY~----------C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e 230 (567)
T PRK04156 162 LKWLGVKWDEV-VIQSDRLEIYYEYARKLIEMGGAYV----------CTCDPEEFKELRDAGKPCPHRDKSPEENLELWE 230 (567)
T ss_pred HHHcCCCCCCc-cCcccCHHHHHHHHHHHHHcCCCcc----------CCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHH
Confidence 99999999875 7999999999999999999999995 455432 122233221 1 11 2
Q ss_pred ccccC---------CCCccccccCc--cccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeecc
Q psy14486 168 SNFNK---------INEKNNFKKDP--LDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQ 236 (472)
Q Consensus 168 ~~~~g---------~v~~~~~k~~~--~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~ 236 (472)
+|.+| |+..+....++ .||++|+......+. ||.++++|+. +.|+..+|.|..|+
T Consensus 231 ~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~~-------~Gd~~~i~Pt-------Y~fA~~VDD~l~GI 296 (567)
T PRK04156 231 KMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPR-------VGDKYRVWPT-------YNFAVAVDDHLLGV 296 (567)
T ss_pred HhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCCCccc-------cCCCeEEEEE-------eccCceeeecCCCC
Confidence 23222 23333233444 799998764333332 7888788863 56777899999999
Q ss_pred CCcC---chhHHHHHHHhhcc--CCCCceEEEeeeeEEecCccccccC-------C--------CccCHHHHHhh-CChh
Q psy14486 237 DLKF---PHHENEIAQSEGAY--KHKFVNYWMHSGFVKINNKKMSKSF-------G--------NFCTIRDLLKK-YNPE 295 (472)
Q Consensus 237 Dl~f---pH~~~~~a~~~a~~--g~~~~~~~~h~g~l~~~G~KMSKS~-------G--------n~i~~~dll~~-~~~d 295 (472)
+|++ .|+.+.+.|...+. |.+.|. |+|.+.|+.+|.|||||. | +..|+..+... |.|+
T Consensus 297 THViRg~d~~~~t~~Q~~l~~~Lg~~~P~-~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~Pe 375 (567)
T PRK04156 297 THVLRGKDHIDNTEKQRYIYDYFGWEYPE-TIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPE 375 (567)
T ss_pred CeEEcccccccChHHHHHHHHHcCCCCce-EEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHH
Confidence 9999 89999999876654 677675 589999999999999998 5 34688888764 9999
Q ss_pred hHHHHhhhcCCC-CCcccCHHHHHHHHHH
Q psy14486 296 VIRFFILRSHYR-STINYSEIYLNYAKKS 323 (472)
Q Consensus 296 ~lR~~ll~~~~~-~~~~fs~~~l~~~~~~ 323 (472)
+||.|+++..++ ++..|+++.|.+..+.
T Consensus 376 Ai~~fl~~lG~s~~~~~~~~~~L~~~nr~ 404 (567)
T PRK04156 376 AIRELIIEVGVKETDATISWENLYAINRK 404 (567)
T ss_pred HHHHHHHHhCCCCCCcccCHHHHHHHHHH
Confidence 999999988766 7999999999877653
No 63
>PLN02286 arginine-tRNA ligase
Probab=99.95 E-value=1.1e-26 Score=248.55 Aligned_cols=327 Identities=16% Similarity=0.135 Sum_probs=230.3
Q ss_pred CCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHH---H--------cCC-----
Q psy14486 22 PGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAK---K--------NNE----- 85 (472)
Q Consensus 22 ~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~---~--------~g~----- 85 (472)
+++|.+-.++|+|.||+||||+|+++++|+|+|.|++.||+|.-...+.|+|.++-.-+. + .+.
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 195 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDL 195 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHH
Confidence 468999999999999999999999999999999999999999999999999876432110 0 000
Q ss_pred -------------------------------------CHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHH
Q psy14486 86 -------------------------------------SIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIE 128 (472)
Q Consensus 86 -------------------------------------~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~ 128 (472)
-|+.+.+.....|.+++++|||.+|.. ..|.|.+.+.++++
T Consensus 196 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~--ges~y~~~~~~vi~ 273 (576)
T PLN02286 196 QEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK--GESFYNPYIPGVIE 273 (576)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec--CchhhhhhHHHHHH
Confidence 023555666788999999999999873 56677778899999
Q ss_pred HHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCccccccccccCCCCCccccccCCCcc
Q psy14486 129 KLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGA 208 (472)
Q Consensus 129 ~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~ 208 (472)
.|.++|++|+. +|.+|++.+.+ +. +.++-|+ +|... +.+
T Consensus 274 ~L~~~g~~~e~-----dGa~~v~l~~~---~~------------------------~~vl~ks--DGt~t---Y~t---- 312 (576)
T PLN02286 274 ELESKGLVVES-----DGARVIFVEGF---DI------------------------PLIVVKS--DGGFN---YAS---- 312 (576)
T ss_pred HHHHCCCEEee-----CCceEeeccCC---CC------------------------ceEEEEC--CCchh---hHH----
Confidence 99999999987 68888765322 10 1111111 22111 000
Q ss_pred CCCCCcchhhHhhhhh--hCCCceEeeeccCCcCchhHHHHHHHhhccCCC-C--c-e-EEEeeeeEE-ecCccccccCC
Q psy14486 209 GRPGWHIECSAMSCYL--LGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHK-F--V-N-YWMHSGFVK-INNKKMSKSFG 280 (472)
Q Consensus 209 g~PgWhiecsam~~~~--~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~-~--~-~-~~~h~g~l~-~~G~KMSKS~G 280 (472)
-..++...++ ++....|.+.|.|+. .|.....+.+.++ |.. . . + .++..|+|+ .+|+||||+.|
T Consensus 313 ------~DIA~~~~k~~~~~~d~~IyVvg~~q~-~hf~~v~~~l~~l-G~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G 384 (576)
T PLN02286 313 ------TDLAALWYRLNEEKAEWIIYVTDVGQQ-QHFDMVFKAAKRA-GWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSG 384 (576)
T ss_pred ------HHHHHHHHHHhccCCCEEEEEEeCcHH-HHHHHHHHHHHHc-CCCccccCCceEEEeeccEECCCCCcccCCCC
Confidence 0011111121 233556888899965 2322233444444 432 2 1 2 245578897 68889999999
Q ss_pred CccCHHHHHhh-----------------------------CChhhHHHHhhhcCCCCCcccCHHHHHHHH--------HH
Q psy14486 281 NFCTIRDLLKK-----------------------------YNPEVIRFFILRSHYRSTINYSEIYLNYAK--------KS 323 (472)
Q Consensus 281 n~i~~~dll~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~--------~~ 323 (472)
++|+++|++++ ++.+++||++|+.+..++++|+|+.+.... .+
T Consensus 385 ~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYa 464 (576)
T PLN02286 385 EVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYA 464 (576)
T ss_pred CeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHH
Confidence 99999999983 457899999999999999999999976554 36
Q ss_pred HHHHHHHHHhcCcccc------cccc-Cc-c-------hhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH------
Q psy14486 324 LIRLYLAIKDIPKINY------KKII-DL-N-------EPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS------ 382 (472)
Q Consensus 324 ~~r~~~~~~~~~~~~~------~~~~-~~-~-------~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~------ 382 (472)
+.|+++++++...... .... +. + ..+.+.+.++. +++.++..+.+|++|++.+|+|++
T Consensus 465 hAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~-~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl~ 543 (576)
T PLN02286 465 HARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEAC-TDLLPNRLCEYLYNLSEKFTKFYSNCKVNG 543 (576)
T ss_pred HHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHhcCccCC
Confidence 8999999998753110 0011 11 1 46677788887 899999999999999999999985
Q ss_pred -----------HHHHHHHHHHHhhhcccc
Q psy14486 383 -----------IKMAKQLRGLGNWLGLLE 400 (472)
Q Consensus 383 -----------~~~~~~l~~~~~ilGi~~ 400 (472)
..+...|+..+.+|||..
T Consensus 544 ~~~~~aRL~L~~a~~~vL~~gL~LLGI~~ 572 (576)
T PLN02286 544 SEEETSRLLLCEATAIVMRKCFHLLGITP 572 (576)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 112346666777788754
No 64
>KOG0435|consensus
Probab=99.95 E-value=1.2e-26 Score=237.92 Aligned_cols=110 Identities=22% Similarity=0.191 Sum_probs=103.4
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
=|.|+|.|||||.|.|.+.|+++|+.|++||+|.+.+|+|-.|.+.+++|.+.|+.|++++..+++.+++.|.+||+.+|
T Consensus 65 FPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~FD 144 (876)
T KOG0435|consen 65 FPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSLGISFD 144 (876)
T ss_pred cCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHcCcccc
Confidence 48888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCC---CcHHHHHHHHHHHHHCCCccccC
Q psy14486 111 DYQPCAT---NYIPQILKMIEKLIFNGLAYQNN 140 (472)
Q Consensus 111 ~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~ 140 (472)
+-..-+| +|....|-+|-+|.++|+||.++
T Consensus 145 WdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~E 177 (876)
T KOG0435|consen 145 WDREISTCEPDYYKWTQWIFLKLFEKGLAYQAE 177 (876)
T ss_pred cccccccCCcchhHHHHHHHHHHHHhhhhhccc
Confidence 7633333 89999999999999999999874
No 65
>KOG0432|consensus
Probab=99.95 E-value=1.1e-26 Score=244.72 Aligned_cols=354 Identities=17% Similarity=0.190 Sum_probs=240.9
Q ss_pred CCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHH----HHHHHHcC-CC----------
Q psy14486 22 PGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKI----IACAKKNN-ES---------- 86 (472)
Q Consensus 22 ~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki----~~~a~~~g-~~---------- 86 (472)
.+...|+.++|+|+|.+|||||-+..+.|+++|+.|+.||.|.|+.|+|..|--+ ++.-.++| ++
T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~ 153 (995)
T KOG0432|consen 74 GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFL 153 (995)
T ss_pred CCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHH
Confidence 4577899999999999999999999999999999999999999999999887322 22322333 32
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc-------
Q psy14486 87 --IKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN------- 154 (472)
Q Consensus 87 --~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~------- 154 (472)
++++-++|...+.+.|++||.+.|+-....| .....+.+.|.+|.+.|++|... +-|-+|+.-
T Consensus 154 ~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~-----rlVNW~~~L~saiSdi 228 (995)
T KOG0432|consen 154 KEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRAN-----RLVNWCPALRSAISDI 228 (995)
T ss_pred HHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecC-----ceeeechhHHhhhhhh
Confidence 6788899999999999999999997633334 45678999999999999999873 444444310
Q ss_pred -----------------c---------------------------------------------cCcCcc---------cC
Q psy14486 155 -----------------F---------------------------------------------LNYGKL---------SG 163 (472)
Q Consensus 155 -----------------~---------------------------------------------~~yg~l---------~~ 163 (472)
+ +.|..+ .+
T Consensus 229 EVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~ 308 (995)
T KOG0432|consen 229 EVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTG 308 (995)
T ss_pred eecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCC
Confidence 0 112111 00
Q ss_pred CCc----c---ccccC----CCCcc-------------------------------------------------------
Q psy14486 164 RLI----S---SNFNK----INEKN------------------------------------------------------- 177 (472)
Q Consensus 164 ~~~----~---~~~~g----~v~~~------------------------------------------------------- 177 (472)
+.+ + ++.-| .+.+.
T Consensus 309 r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~ 388 (995)
T KOG0432|consen 309 RKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLY 388 (995)
T ss_pred CccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhh
Confidence 000 0 00000 00000
Q ss_pred -ccccCc---------cccc------ccc------------ccCCCCCcc----------------ccc----cCCCccC
Q psy14486 178 -NFKKDP---------LDFA------LWK------------VSKNNDPYE----------------IRW----NSKWGAG 209 (472)
Q Consensus 178 -~~k~~~---------~df~------lwk------------~~~~g~~~~----------------~~w----~~~wG~g 209 (472)
..+.|| .|.. +|- ....|+..+ -.| ...||..
T Consensus 389 ~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHr 468 (995)
T KOG0432|consen 389 VGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHR 468 (995)
T ss_pred hccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccc
Confidence 000011 0110 121 012233110 012 2479999
Q ss_pred CCCCcch---------h--h----------Hhhh---------------------------hhhCCC-----------ce
Q psy14486 210 RPGWHIE---------C--S----------AMSC---------------------------YLLGSH-----------FD 230 (472)
Q Consensus 210 ~PgWhie---------c--s----------am~~---------------------------~~~g~~-----------~d 230 (472)
+|.|++. | + |+.. .-|||| ..
T Consensus 469 IPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~s 548 (995)
T KOG0432|consen 469 IPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLS 548 (995)
T ss_pred cceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCch
Confidence 9999872 1 0 1100 012443 34
Q ss_pred EeeeccCCcCchhHHHHHHHhhccC-CCCceEEEeeeeEE-ecCccccccCCCccCHHHHHh------------------
Q psy14486 231 IHGGGQDLKFPHHENEIAQSEGAYK-HKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLK------------------ 290 (472)
Q Consensus 231 ih~~G~Dl~fpH~~~~~a~~~a~~g-~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~------------------ 290 (472)
+.=-|.|++||+-.....+..-++| .||.+..+| ++|. ..|+|||||+||||+|.|+++
T Consensus 549 llETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH-~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp 627 (995)
T KOG0432|consen 549 LLETGHDILFFWVARMVMLGLKLTGELPFKEVLLH-GLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDP 627 (995)
T ss_pred hhhcCchHHHHHHHHHHHhhhhhcCCCCchheeec-hhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCH
Confidence 5556999999999888888777777 688888777 7776 789999999999999999997
Q ss_pred ------------hC-------ChhhHHHHhhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHhcCc---c--cccc--cc
Q psy14486 291 ------------KY-------NPEVIRFFILRS-HYRSTINYSEIYLNYAKKSLIRLYLAIKDIPK---I--NYKK--II 343 (472)
Q Consensus 291 ------------~~-------~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~---~--~~~~--~~ 343 (472)
.| |.|++||.|++. .-.++|+++...+...+.+.++++|+.+.+.. . .+.. +.
T Consensus 628 ~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~ 707 (995)
T KOG0432|consen 628 REVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDL 707 (995)
T ss_pred HHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Confidence 24 999999999986 78889999999999999999999999876522 1 1211 10
Q ss_pred ---Cc---------chhHHHHHHHHHHhccChhHHHHHHHHHHH--HHHHHHH
Q psy14486 344 ---DL---------NEPHAKRFIIAMNDDFNTPVAISILFDLAN--IINKNKS 382 (472)
Q Consensus 344 ---~~---------~~~~~~~~~~al~dd~n~~~al~~l~~l~~--~~N~~~~ 382 (472)
.. .....++..+.| +.+|+..|.++++.|.- .+.-|+.
T Consensus 708 ~~~~~~~d~WIlsrL~~av~~~~~~~-~~~~f~~at~a~~~Fwl~~lCDVYlE 759 (995)
T KOG0432|consen 708 SGNESLVDEWILSRLAEAVEEVNESL-EARNFHLATSALYAFWLYDLCDVYLE 759 (995)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 135577888999 89999999999988762 3445554
No 66
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.93 E-value=1.1e-25 Score=199.78 Aligned_cols=142 Identities=30% Similarity=0.315 Sum_probs=126.0
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~Lg 106 (472)
+++|||+|+|++||||+|+++.+|+++|+||++|++|.+++++||+|+++...|.+.+.+++++++++.+.|.++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--- 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE--- 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCcccc
Q psy14486 107 IQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDF 186 (472)
Q Consensus 107 I~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df 186 (472)
T Consensus 78 -------------------------------------------------------------------------------- 77 (143)
T cd00802 78 -------------------------------------------------------------------------------- 77 (143)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeee
Q psy14486 187 ALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSG 266 (472)
Q Consensus 187 ~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g 266 (472)
|+++|++++..+.+...+++++|+|+.+ |+.+..++++++.+. .+..++|.+
T Consensus 78 --------------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~-~~p~~~~~~ 129 (143)
T cd00802 78 --------------------------YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGP-ARPFGLTFG 129 (143)
T ss_pred --------------------------HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCC-CCceEEEeC
Confidence 3345566666655555799999999997 999999999998643 344679999
Q ss_pred eEEe-cCccccccC
Q psy14486 267 FVKI-NNKKMSKSF 279 (472)
Q Consensus 267 ~l~~-~G~KMSKS~ 279 (472)
+|+. +|+|||||+
T Consensus 130 ~l~~~~g~KmSks~ 143 (143)
T cd00802 130 RVMGADGTKMSKSK 143 (143)
T ss_pred CeECCCCCcCCCCC
Confidence 9997 559999995
No 67
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=9.9e-25 Score=221.24 Aligned_cols=278 Identities=17% Similarity=0.143 Sum_probs=191.4
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccH--HH----H--HHH-HHcCCC--------
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDD--KI----I--ACA-KKNNES-------- 86 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~--ki----~--~~a-~~~g~~-------- 86 (472)
.--++-+|.||+|.+||||+|..+.+|+++|.|+.+|++|.+|.-+||+|. |+ . ... +-.|++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 346778999999999999999999999999999999999999999999984 22 1 122 223553
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCCCCccccCCC----------------cHHHHHHHHHHHHHCCCccccCCCccCCcE
Q psy14486 87 --IKTLTSRFIKAAQEDSLLLHIQPPDYQPCATN----------------YIPQILKMIEKLIFNGLAYQNNNGKINGDV 148 (472)
Q Consensus 87 --~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~----------------~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v 148 (472)
+..+++++.+.|.+.|..|||.+..+ ++|+ +.+.+.+++..-..+ +.. ++-.
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~E~~--s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~----~~~----e~~~ 168 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEVEFV--SATELYKSGLYDEAIRIALERRDEIMEILNEYRGR----ELE----EDWS 168 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEE--EhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC----ccc----CCce
Confidence 67999999999999999999988765 4442 333344444433322 111 2222
Q ss_pred EEecccccCcCcccCCCccccccC-CCCccccccC--ccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhh
Q psy14486 149 NYSVRNFLNYGKLSGRLISSNFNK-INEKNNFKKD--PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLL 225 (472)
Q Consensus 149 ~f~~~~~~~yg~l~~~~~~~~~~g-~v~~~~~k~~--~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~ 225 (472)
.|.+ -|+.||++....+.+...+ +|...+..-+ -.|.. .-.+... |..+|+.. +..|
T Consensus 169 P~~p-iC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir----~g~~KL~---WRvdWp~R------------W~~l 228 (521)
T COG1384 169 PFMP-ICEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIR----GGEGKLP---WRVDWPMR------------WAAL 228 (521)
T ss_pred eccc-cccccCCcceeEEEEecCCceEEEEecCCccceeecc----ccCcccc---cCcCccch------------hhcc
Confidence 3333 3788999655544443322 3321111000 00110 0112222 44444222 2334
Q ss_pred CCCceEeeeccCCcCchhHHHHH--HHhhccCCCCceEEEeeeeEEecC-ccccccCCCccCHHHHHhhCChhhHHHHhh
Q psy14486 226 GSHFDIHGGGQDLKFPHHENEIA--QSEGAYKHKFVNYWMHSGFVKINN-KKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302 (472)
Q Consensus 226 g~~~dih~~G~Dl~fpH~~~~~a--~~~a~~g~~~~~~~~h~g~l~~~G-~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll 302 (472)
.+|+...|+||.-+-..+..+ ++...+|.++|.- +.++|++++| +|||||+||+|+++|+++.++|+.|||+++
T Consensus 229 --gVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~-~~YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~ 305 (521)
T COG1384 229 --GVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVP-FVYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIA 305 (521)
T ss_pred --CcccccCCcccccccCchHHHHHHHHHhcCCCCCCC-CceEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeee
Confidence 689999999998877777654 3333457444422 4569999988 899999999999999999999999999999
Q ss_pred hcCCCCCcccCHHH-HHHHHHHHHHHHHHHHhc
Q psy14486 303 RSHYRSTINYSEIY-LNYAKKSLIRLYLAIKDI 334 (472)
Q Consensus 303 ~~~~~~~~~fs~~~-l~~~~~~~~r~~~~~~~~ 334 (472)
++++.+.++|+.+. +.+....+.|+.+.....
T Consensus 306 r~kP~r~~~~d~~~~il~lvDEydr~e~~Y~~~ 338 (521)
T COG1384 306 RTKPNRHIDFDFDLGILKLVDEYDRLERIYFGE 338 (521)
T ss_pred ecCCCcceecCCCCChhHHHHHHHHHHHHHhcc
Confidence 99999999999998 888888888877776543
No 68
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.92 E-value=1.2e-25 Score=222.60 Aligned_cols=279 Identities=16% Similarity=0.132 Sum_probs=156.0
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccH--HHHHHHHH------cCCC--------
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDD--KIIACAKK------NNES-------- 86 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~--ki~~~a~~------~g~~-------- 86 (472)
+..-++-+|-||+|.+||||+|..+.+|+++|.|+.+|.+|.++..+||+|. |+....-+ .|++
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 4667888999999999999999999999999999999999999999999994 33321111 1332
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCCCCccccCCC----------------cHHHHHHHHHHHHHCCCccccCCCccCCcE
Q psy14486 87 --IKTLTSRFIKAAQEDSLLLHIQPPDYQPCATN----------------YIPQILKMIEKLIFNGLAYQNNNGKINGDV 148 (472)
Q Consensus 87 --~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~----------------~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v 148 (472)
...++++|...|.+.|+.|||.+..+ ++|+ +.+.|.+++.....+. .. +.
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~e~~--s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~------~~-- 169 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEYEFI--SQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RP------ET-- 169 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT---EEE--ECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT----------TT--
T ss_pred CCCccHHHHHHHHHHHHHHHcCCceEEE--eHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CC------CC--
Confidence 47899999999999999999988654 3331 3334444444432222 11 12
Q ss_pred EEecc-cccCcCcccCCCcccccc--CCCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhh
Q psy14486 149 NYSVR-NFLNYGKLSGRLISSNFN--KINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLL 225 (472)
Q Consensus 149 ~f~~~-~~~~yg~l~~~~~~~~~~--g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~ 225 (472)
|+... -|+.||++....+.+... ++|. |..-.+...|+..+ .=|.|...|.++++ |-...+
T Consensus 170 y~Pf~piC~~cGri~tt~v~~~d~~~~~v~----------Y~c~~cG~~g~~~i-----~~g~gKL~WkvDW~-mRW~~l 233 (360)
T PF01921_consen 170 YSPFLPICEKCGRIDTTEVTEYDPEGGTVT----------YRCEECGHEGEVDI-----TGGNGKLQWKVDWP-MRWAAL 233 (360)
T ss_dssp --SEEEEETTTEE--EEEEEEE--SSSEEE----------EE--TTS---EEET-----TTT-EEE-HHHHHH-HHHHHT
T ss_pred eeeeeeeccccCCcccceeeEeecCCCEEE----------EEecCCCCEEEEec-----CCCcccccCCCcCh-hhhhhc
Confidence 33322 368899965444443321 1222 11100111111110 01233334666654 333445
Q ss_pred CCCceEeeeccCCcCchhHHHHHHHhh--ccCCCCceEEEeeeeEEecCc-cccccCCCccCHHHHHhhCChhhHHHHhh
Q psy14486 226 GSHFDIHGGGQDLKFPHHENEIAQSEG--AYKHKFVNYWMHSGFVKINNK-KMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302 (472)
Q Consensus 226 g~~~dih~~G~Dl~fpH~~~~~a~~~a--~~g~~~~~~~~h~g~l~~~G~-KMSKS~Gn~i~~~dll~~~~~d~lR~~ll 302 (472)
.+|+...|+||.-|-.....+...| ..|.++|.. +.++|+.++|+ |||||+||+|+++|+|+-++|++|||+++
T Consensus 234 --gVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~-~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~ 310 (360)
T PF01921_consen 234 --GVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVP-FPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMA 310 (360)
T ss_dssp --T-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EE-EEE--EEES--------------HHHHHTTS-HHHHHHHHH
T ss_pred --CceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCC-CCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHc
Confidence 6899999999998887887765444 456666644 66799999887 99999999999999999999999999999
Q ss_pred hcCCCCCcccCHH-HHHHHHHHHHHHHHHHH
Q psy14486 303 RSHYRSTINYSEI-YLNYAKKSLIRLYLAIK 332 (472)
Q Consensus 303 ~~~~~~~~~fs~~-~l~~~~~~~~r~~~~~~ 332 (472)
++.+.+..+|+.+ .+......+.|+.+...
T Consensus 311 ~~~P~~~~~~~~~~~i~~~~Deyd~~~~~y~ 341 (360)
T PF01921_consen 311 RTKPNKAKDFSFDLVIPRLYDEYDRLERKYF 341 (360)
T ss_dssp CS-TTS-EEE--STTHHHHHHHHHHHHHHHT
T ss_pred ccCCCcceEeccCcchHHHHHHHHHHHHHhc
Confidence 9999999999998 88888888888776665
No 69
>KOG0433|consensus
Probab=99.90 E-value=1.9e-21 Score=201.74 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=115.2
Q ss_pred ceEeeeccCCcCchhHHHHHHHhhccC-CCCceEEEeeeeEE-ecCccccccCCCccCHHHHHhh------CChhhHHHH
Q psy14486 229 FDIHGGGQDLKFPHHENEIAQSEGAYK-HKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKK------YNPEVIRFF 300 (472)
Q Consensus 229 ~dih~~G~Dl~fpH~~~~~a~~~a~~g-~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~------~~~d~lR~~ 300 (472)
.|+..-|.|...-+..--.-.+.|..+ .|+...+.| ||.. .+|.|||||+||+|.|+.++++ ||+|.+|||
T Consensus 567 aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivH-GFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~W 645 (937)
T KOG0433|consen 567 ADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVH-GFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFW 645 (937)
T ss_pred eeeEEecchhcchHHHHHHHHHHHHhccCCchheeee-eeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeee
Confidence 578888999765555544555556555 455555555 8876 6899999999999999999997 999999999
Q ss_pred hhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHhcCcc----ccc------cc---cCc-----chhHHHHHHHHHHhccC
Q psy14486 301 ILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKI----NYK------KI---IDL-----NEPHAKRFIIAMNDDFN 362 (472)
Q Consensus 301 ll~~~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~~----~~~------~~---~~~-----~~~~~~~~~~al~dd~n 362 (472)
.+++.+..++...+..|.++...+.++++.++.+.+. .+. .+ .|+ ..++..++.+.+ ++|+
T Consensus 646 VA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y-~~Y~ 724 (937)
T KOG0433|consen 646 VAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELY-NDYK 724 (937)
T ss_pred eecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 9988999999999999999999999999998876442 111 11 121 157788899999 8999
Q ss_pred hhHHHHHHHHHHH
Q psy14486 363 TPVAISILFDLAN 375 (472)
Q Consensus 363 ~~~al~~l~~l~~ 375 (472)
+.+++..|..+..
T Consensus 725 f~kVv~~lq~F~~ 737 (937)
T KOG0433|consen 725 FRKVVNDLQQFLQ 737 (937)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 70
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=99.88 E-value=5.2e-22 Score=178.68 Aligned_cols=149 Identities=46% Similarity=0.715 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH------HHHHHH
Q psy14486 315 IYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS------IKMAKQ 388 (472)
Q Consensus 315 ~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~------~~~~~~ 388 (472)
+.|+++.+.+.|+++++..+... ... ......+..+|.+||+||||||.|++.|+++++.+|++++ ..+...
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~~~-~~~-~~~~~~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~~~~~~~~~~~~~ 79 (156)
T cd07963 2 DNLEDARAALERLYTALRGVPPT-TVD-IDWGEPFAERFIAAMDDDFNTPEALAVLFELAREINRLKKEDIEKAAALAAL 79 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhHhc-ccc-hhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 57899999999999999876311 100 0111346689999999999999999999999999998653 223455
Q ss_pred HHHHHhhhcccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHHHHhHhCCcEEEecCCCeee
Q psy14486 389 LRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTE 468 (472)
Q Consensus 389 l~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~~Gi~v~D~~~g~t~ 468 (472)
+..+..+||++...+..++..... ..+...+.|+.|++.|++||++|||++||+||++|.++||.|+|||+| |+
T Consensus 80 l~~~~~vLGl~~~~~~~~~~~~~~-----~~~~~~~~v~~Ll~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~i~Dt~~G-t~ 153 (156)
T cd07963 80 LKALGGVLGLLQQDPEAFLQGGTG-----EGGLSVAEIEALIAQRNQARKAKDWAEADRIRDELAAQGIILEDSPEG-TT 153 (156)
T ss_pred HHHHHhccCCCCCCHHHHHhcccc-----ccccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEECCCC-ce
Confidence 777788999954322221211000 011123469999999999999999999999999999999999999999 99
Q ss_pred EEE
Q psy14486 469 WRR 471 (472)
Q Consensus 469 w~~ 471 (472)
|++
T Consensus 154 w~~ 156 (156)
T cd07963 154 WRR 156 (156)
T ss_pred eeC
Confidence 974
No 71
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.88 E-value=1.2e-22 Score=206.06 Aligned_cols=246 Identities=24% Similarity=0.260 Sum_probs=161.0
Q ss_pred CCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHH-------H----------
Q psy14486 20 ITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAK-------K---------- 82 (472)
Q Consensus 20 ~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~-------~---------- 82 (472)
..+++|.|-.++|+|.||+||||+|+.+++|+|+|.|+..||+|.-...+.|+|.++-.-+. +
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 34678999999999999999999999999999999999999999999999999876532110 0
Q ss_pred --------------c-----------------------C-CCHHHHHHH-HHHHHHHHHHHhCCCCCCccccCCC--cHH
Q psy14486 83 --------------N-----------------------N-ESIKTLTSR-FIKAAQEDSLLLHIQPPDYQPCATN--YIP 121 (472)
Q Consensus 83 --------------~-----------------------g-~~~~~~~~~-~~~~~~~~l~~LgI~~d~~~~r~s~--~~~ 121 (472)
. | ....++... ..+.+++++.+|+|.+|.++.. ++ +.+
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E-~Es~~~~ 175 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDE-SESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEH-CHHHHTT
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccc-chhhhhh
Confidence 0 0 013344555 7788899999999999988532 43 456
Q ss_pred HHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCccccccccccCCCCCcccc
Q psy14486 122 QILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIR 201 (472)
Q Consensus 122 ~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~ 201 (472)
.+.+++++|.++|++|+. +|.++++++.+ |.. .+.++-|+ +|-..
T Consensus 176 ~v~~vl~~L~e~g~~~~~-----dGa~~i~~~~~---g~~----------------------k~~Vl~ks--DGt~~--- 220 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYES-----DGALWIDLTKF---GDD----------------------KDRVLRKS--DGTST--- 220 (354)
T ss_dssp HHHHHHHHHHCTTTEEEE-----TTEEEEEGCCT---STS----------------------S-EEEEET--TSEB----
T ss_pred HHHHHHHHHHhCCcEEec-----CCcEEEechhc---CCC----------------------CcceEEcC--CCceE---
Confidence 789999999999999987 79999998765 221 12222221 22211
Q ss_pred ccCCCccCCCCCcc-hhhHhhhhh--hCCCceEeeeccCCcCchhHHHHHHHhhccCC-CC-ceE-EEeeeeEEe-cCc-
Q psy14486 202 WNSKWGAGRPGWHI-ECSAMSCYL--LGSHFDIHGGGQDLKFPHHENEIAQSEGAYKH-KF-VNY-WMHSGFVKI-NNK- 273 (472)
Q Consensus 202 w~~~wG~g~PgWhi-ecsam~~~~--~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~-~~~-~~h~g~l~~-~G~- 273 (472)
+.. ..++...++ .+....|.+.|.|+. -|.....+.+.++ |. +. .+. ++..|+++. +|+
T Consensus 221 -----------Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~-~hf~~l~~~l~~l-g~~~~~~~~~H~~~g~vl~~~gk~ 287 (354)
T PF00750_consen 221 -----------YLTRDIAYHLYRFEEYGFDKIIYVVGADQK-GHFKQLFAILEAL-GYDPEAVKLQHVSFGVVLLKDGKV 287 (354)
T ss_dssp -----------HHHHHHHHHHHHHCCSS-SEEEEEEEGGGH-HHHHHHHHHHHHT-T-HHHHCTEEEEEE-EEEETTBEE
T ss_pred -----------EEcchHHHHHHHHhhhccccEEEEecCchh-hHHHHHHHHHHHh-CCCCCCCEEEEEEEEEEEcCCCCc
Confidence 000 011111222 344566889999975 3333333444444 33 11 222 244566654 565
Q ss_pred cccccCCCccCHHHHHh--------------------------hCChhhHHHHhhhcCCCCCcccCH
Q psy14486 274 KMSKSFGNFCTIRDLLK--------------------------KYNPEVIRFFILRSHYRSTINYSE 314 (472)
Q Consensus 274 KMSKS~Gn~i~~~dll~--------------------------~~~~d~lR~~ll~~~~~~~~~fs~ 314 (472)
||||+.||+|+++|||+ ..+..++||++|+....+++.|+|
T Consensus 288 ~mstR~G~~i~l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 288 KMSTRKGNVITLDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp SS-TTTTSSTBHHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred cccCCCCCceEHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 79999999999999999 477889999999999999999986
No 72
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.86 E-value=3.3e-21 Score=182.42 Aligned_cols=211 Identities=23% Similarity=0.229 Sum_probs=153.5
Q ss_pred EEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Q psy14486 28 YVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHI 107 (472)
Q Consensus 28 y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI 107 (472)
-=|+|||||++||||+|++++.++++| ++++.++.++||+|++.+ ...+.+.+.|.++|++||+
T Consensus 4 ~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~wLGl 67 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEWLGV 67 (240)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHHcCC
Confidence 358999999999999999999999999 599999999999998854 1333556669999999999
Q ss_pred CCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCccccc
Q psy14486 108 QPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFA 187 (472)
Q Consensus 108 ~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df~ 187 (472)
.+|.. +++|++++.+++++++|+++|++|... .. | .||.
T Consensus 68 ~~d~~-~~qS~r~~~y~~~~~~Li~~G~aY~~~----~~------------~------------------------~~~~ 106 (240)
T cd09287 68 KWDEV-VIASDRIELYYEYARKLIEMGGAYVHP----RT------------G------------------------SKYR 106 (240)
T ss_pred CCCCc-cchhccHHHHHHHHHHHHHcCCcccCc----cc------------C------------------------CcEE
Confidence 99854 799999999999999999999999531 10 0 1233
Q ss_pred cccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeee
Q psy14486 188 LWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGF 267 (472)
Q Consensus 188 lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~ 267 (472)
+| |.+|+.|+. -.... .++.-+-|.|++ +.+...+.+.+++ |.+.|.+ .|...
T Consensus 107 i~---------------------ptY~la~vV-DD~~~--gIThViRg~d~~-~~t~~q~~l~~~L-g~~~P~~-~H~pl 159 (240)
T cd09287 107 VW---------------------PTLNFAVAV-DDHLL--GVTHVLRGKDHI-DNTEKQRYIYEYF-GWEYPET-IHWGR 159 (240)
T ss_pred EE---------------------Eccccceee-ecccc--CCCeEEechhhh-hCCHHHHHHHHHc-CCCCCcE-Eeeee
Confidence 21 334433210 00111 233334488876 5555566666776 5666776 57788
Q ss_pred EEecCccccccCCC---------------ccCHHHHHh-hCChhhHHHHhhhc-CCCCCcccCHHHHHHHHH
Q psy14486 268 VKINNKKMSKSFGN---------------FCTIRDLLK-KYNPEVIRFFILRS-HYRSTINYSEIYLNYAKK 322 (472)
Q Consensus 268 l~~~G~KMSKS~Gn---------------~i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~ 322 (472)
++.+|+||||+.+. ..++..+.+ .+.|++++-|+++. --..+..++++.|....+
T Consensus 160 l~~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r 231 (240)
T cd09287 160 LKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINR 231 (240)
T ss_pred ecCCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Confidence 88899999999842 135666654 69999999988875 344677899998876554
No 73
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.80 E-value=8.7e-19 Score=183.22 Aligned_cols=234 Identities=16% Similarity=0.136 Sum_probs=150.7
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|+++....++|. ++..|+..|+|.|. ......+.+.+.++|++||+.+|
T Consensus 7 APsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~~d 68 (470)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFAKH-----TGGEFILRIEDTDL-------------ERNIEEAEEAILEGLKWLGISWD 68 (470)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------ccCChHHHHHHHHHHHHCCCCCC
Confidence 5999999999999999999999997 77899999999994 34455899999999999999999
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------cCcCcccC-CCcccc----cc
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------LNYGKLSG-RLISSN----FN 171 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~~yg~l~~-~~~~~~----~~ 171 (472)
.-..++|++.+.+.+++++|+++|.||. |||+... +.|..-|. ...++. ..
T Consensus 69 e~~~~QS~r~~~y~~~~~~L~~~g~aY~----------C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~ 138 (470)
T TIGR00464 69 EGPYYQSQRLDIYKKYAKELLEEGLAYR----------CYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAK 138 (470)
T ss_pred CCeeehhCCHHHHHHHHHHHHHcCCEEe----------cCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhc
Confidence 5445889999999999999999999995 7776431 23322222 111111 11
Q ss_pred C-----CCCccccccCccccccccccCCCCCcc-----ccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCc
Q psy14486 172 K-----INEKNNFKKDPLDFALWKVSKNNDPYE-----IRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241 (472)
Q Consensus 172 g-----~v~~~~~k~~~~df~lwk~~~~g~~~~-----~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fp 241 (472)
| |+.... .. . ..|.....|+... ..+-.--..|.|.+|+.|.. ..... .++..+-|.|++ +
T Consensus 139 g~~~~iR~k~~~--~~--~-~~~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~v-dD~~~--~ithvIrG~d~~-~ 209 (470)
T TIGR00464 139 GIPPVVRFKIPQ--EA--V-VSFNDQVRGEITFQNSELDDFVILRSDGSPTYNFAVVV-DDYLM--KITHVIRGEDHI-S 209 (470)
T ss_pred CCCceEEEEcCC--CC--c-eeEEecccceEEecCccCCCeEEEecCCCcccccHHHH-HHHhC--CCCEEEECchhh-c
Confidence 2 111000 00 0 1122222222110 00000113467888876542 22222 344444799977 4
Q ss_pred hhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhh-CChhhHHHHhhh
Q psy14486 242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK-YNPEVIRFFILR 303 (472)
Q Consensus 242 H~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~ 303 (472)
|.....+...++ |.+.|++..+.-+++.+|+||||+.| .++++++++. |.|++++-|+++
T Consensus 210 ~t~~~~~l~~aL-g~~~p~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 210 NTPKQILIYQAL-GWKIPVFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CHHHHHHHHHHc-CCCCCeEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHH
Confidence 555556666666 56667764444445679999999999 7899999985 456555444443
No 74
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.79 E-value=1.4e-18 Score=180.57 Aligned_cols=253 Identities=15% Similarity=0.162 Sum_probs=171.5
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||||++++...++|. ++..++..++|.|. ..-...|.+.|.++|++||+.+|
T Consensus 17 APsPtG~LHiGharaAlln~l~Ar~-----~gG~~iLRiEDTDp-------------~R~~~e~~~~I~~dL~WLGl~wD 78 (523)
T PLN03233 17 PPEPSGYLHIGHAKAALLNDYYARR-----YKGRLILRFDDTNP-------------SKEKAEFEESIIEDLGKIEIKPD 78 (523)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCC-------------CccchHHHHHHHHHHHHhCCCCC
Confidence 5999999999999999999999997 77899999999995 33445899999999999999998
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc------c----CcCcccCCC----ccccccC----
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF------L----NYGKLSGRL----ISSNFNK---- 172 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~------~----~yg~l~~~~----~~~~~~g---- 172 (472)
.. ..+|++.+.+.++.++|+++|.||. |||.... + .|-.++..+ .+++..|
T Consensus 79 ~~-~~qSdr~~~y~~~a~~Li~~G~AY~----------C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~ 147 (523)
T PLN03233 79 SV-SFTSDYFEPIRCYAIILIEEGLAYM----------DDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEG 147 (523)
T ss_pred CC-ccccccHHHHHHHHHHHHHcCCeEe----------cCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccC
Confidence 75 6899999999999999999999995 5665431 1 011111100 0112111
Q ss_pred -----CC--CccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeee-ccCCcCchhH
Q psy14486 173 -----IN--EKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGG-GQDLKFPHHE 244 (472)
Q Consensus 173 -----~v--~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~-G~Dl~fpH~~ 244 (472)
|+ +....-.+..||++.+....-.+. .-..| .+.|.+++.|+. ..... .+ .|++ |.|++ ++..
T Consensus 148 ~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~h~~---~Gd~~-~~~PtY~fA~~V-DD~l~--gI-THviRg~E~~-~~t~ 218 (523)
T PLN03233 148 GAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHR---SGTAY-KAYPTYDLACPI-VDSIE--GV-THALRTTEYD-DRDA 218 (523)
T ss_pred CCeEEEEeCcccCCCCCCcCCEEEEEcCCcccc---cCCcc-cceeccCCceee-ecccc--CC-CeEEechhhh-cCCH
Confidence 11 111111223577776642111111 12223 566777766521 11111 22 3443 77765 4555
Q ss_pred HHHHHHhhccCCCCceEEEeeeeEEecCccccccC------CCcc---------CHHHHHh-hCChhhHHHHhhhc-CCC
Q psy14486 245 NEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSF------GNFC---------TIRDLLK-KYNPEVIRFFILRS-HYR 307 (472)
Q Consensus 245 ~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~------Gn~i---------~~~dll~-~~~~d~lR~~ll~~-~~~ 307 (472)
....+..++ |.+.|.+ .|.+.+++.|.|||||. .+.+ |+..+.. .|.|++||-|++.. .-.
T Consensus 219 ~q~~l~~aL-g~~~P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~ 296 (523)
T PLN03233 219 QFFWIQKAL-GLRRPRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASR 296 (523)
T ss_pred HHHHHHHHh-CCCCCee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCC
Confidence 555555665 5666776 67888999999999997 2334 5788775 59999999999997 566
Q ss_pred CCcccCHHHHHHHHHH
Q psy14486 308 STINYSEIYLNYAKKS 323 (472)
Q Consensus 308 ~~~~fs~~~l~~~~~~ 323 (472)
.+..++++.|.+..+.
T Consensus 297 ~~~~i~~~~l~~~nR~ 312 (523)
T PLN03233 297 RVVNLDWAKFWAENKK 312 (523)
T ss_pred CCceecHHHHHHHHHH
Confidence 6789999999887763
No 75
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.79 E-value=1.1e-18 Score=179.47 Aligned_cols=251 Identities=18% Similarity=0.103 Sum_probs=157.1
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||||+++...+++|. ++..|+..|+|.|. ....+.+.+.|.++|++|||.+|
T Consensus 8 APSPTG~lHiG~artAL~n~l~Ar~-----~gG~fiLRIEDTD~-------------~Rs~~~~~~~I~e~L~wLGI~~D 69 (445)
T PRK12558 8 APSPTGYLHVGNARTALLNWLYARK-----HGGKFILRIDDTDL-------------ERSKQEYADAIAEDLKWLGINWD 69 (445)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeccCCc-------------ccchHHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999888888777 89999999999994 23446899999999999999999
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------cCcCcccCC-Cccc----ccc
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------LNYGKLSGR-LISS----NFN 171 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~~yg~l~~~-~~~~----~~~ 171 (472)
.+ .++|+..+.+.+++++|+++|++|. |||+... +.|..-|.. ..++ ...
T Consensus 70 e~-y~QSer~~~y~~~~e~L~e~G~AY~----------C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~ 138 (445)
T PRK12558 70 RT-FRQSDRFDRYDEAAEKLKAAGRLYP----------CYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAE 138 (445)
T ss_pred cc-ccHHHHHHHHHHHHHHHHHCCCEEE----------ecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhc
Confidence 76 5888888999999999999999995 7776542 123322211 0011 111
Q ss_pred CCCCccccccCccccccccccCCCCCccc-----cccCCCccCCCCCcchhhHhhhhhhCCCceEeee-ccCCcCchhHH
Q psy14486 172 KINEKNNFKKDPLDFALWKVSKNNDPYEI-----RWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGG-GQDLKFPHHEN 245 (472)
Q Consensus 172 g~v~~~~~k~~~~df~lwk~~~~g~~~~~-----~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~-G~Dl~fpH~~~ 245 (472)
|+-..-..|- +..-..|.....|+.... .+-.--..|.|.+|+.|+.- .... .+ .|++ |.|++ +.+-.
T Consensus 139 g~~~~iR~k~-~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVD-D~~m--~I-THViRG~d~l-~~t~~ 212 (445)
T PRK12558 139 GRKPHWRFKL-DDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTLPSVVD-DIDM--GI-THIIRGEDHV-TNTAV 212 (445)
T ss_pred CCCceEEEec-CCCceEEEEEeeeEeecccccCCCeEEEecCCCccccccceec-cccC--CC-CEEEechhhh-hCCHH
Confidence 1000000000 000111222212221100 00000123567777765311 0011 22 3443 77755 33334
Q ss_pred HHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHh-hCChhhHHHHhhhc--CCCCCcccCHHHHHH
Q psy14486 246 EIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRS--HYRSTINYSEIYLNY 319 (472)
Q Consensus 246 ~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~--~~~~~~~fs~~~l~~ 319 (472)
.+.+.+|+ |.+.|.| .|..++. .+|+|+||+.|. .++.++.+ .|.|++++=|++.- ++....-||.+.+.+
T Consensus 213 q~~l~~al-g~~~P~f-~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~ 287 (445)
T PRK12558 213 QIQIFEAL-GAKPPVF-AHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAE 287 (445)
T ss_pred HHHHHHHh-CCCCCeE-EEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHH
Confidence 44555565 6777876 5656665 689999999987 68888886 69999999998874 333334478877754
No 76
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.77 E-value=7e-18 Score=176.54 Aligned_cols=237 Identities=17% Similarity=0.156 Sum_probs=149.9
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|+++....++|. ++..|+..|+|.|. ......+.+.+.++|++||+.+|
T Consensus 10 APSPtG~lHiG~~rtal~n~l~Ar~-----~~G~fiLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~~D 71 (476)
T PRK01406 10 APSPTGYLHIGGARTALFNWLFARH-----HGGKFILRIEDTDQ-------------ERSTEEAEEAILEGLKWLGLDWD 71 (476)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------CCCChHHHHHHHHHHHHCCCCCC
Confidence 5999999999999999999999998 78899999999994 34556899999999999999999
Q ss_pred Cc-------cccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------cCcCcccCC-Cccc
Q psy14486 111 DY-------QPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------LNYGKLSGR-LISS 168 (472)
Q Consensus 111 ~~-------~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~~yg~l~~~-~~~~ 168 (472)
.- ..++|++.+.+.+++++|+++|.||. |||.... +.|-.-|.. ..++
T Consensus 72 e~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY~----------C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~ 141 (476)
T PRK01406 72 EGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAYY----------CYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEE 141 (476)
T ss_pred CCCccCCCCceehhcCHHHHHHHHHHHHHcCCeee----------cCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHH
Confidence 65 34889999999999999999999995 7776531 223222221 1111
Q ss_pred ----cccCCCCccccccCccc-cccccccCCCCCccc-----cccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCC
Q psy14486 169 ----NFNKINEKNNFKKDPLD-FALWKVSKNNDPYEI-----RWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDL 238 (472)
Q Consensus 169 ----~~~g~v~~~~~k~~~~d-f~lwk~~~~g~~~~~-----~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl 238 (472)
+..|+-.+-.. +.|.+ -..|.....|+.... .+-.--..|.|.+|..+. ......| ++..+-|.|+
T Consensus 142 ~~~~~~~g~~~~iR~-k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~v-VdD~~~~--ithvIrG~d~ 217 (476)
T PRK01406 142 VAARLAAGEPPVIRF-KVPDEGEVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVV-VDDHLMG--ITHVIRGEDH 217 (476)
T ss_pred HHHHHhCCCCeeEEE-EcCCCCceEEEEeccceEEeccccCCCcEEEecCCCccccchHH-HHHHHcC--CCEEEECchh
Confidence 11220000000 00000 111222112211100 000001245676776543 1222332 3433468886
Q ss_pred cCchhHHHHHHHhhccCCCCceEEEeeee-EEecCccccccCCCccCHHHHHhh-CChhhHHHHhhh
Q psy14486 239 KFPHHENEIAQSEGAYKHKFVNYWMHSGF-VKINNKKMSKSFGNFCTIRDLLKK-YNPEVIRFFILR 303 (472)
Q Consensus 239 ~fpH~~~~~a~~~a~~g~~~~~~~~h~g~-l~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~ 303 (472)
+ +|.-...+...++ |.+.|++ .|..+ ++.+|+||||+.| .++++++.+. |.|+++.-|++.
T Consensus 218 ~-~~t~~q~~l~~al-G~~~p~~-~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 218 L-SNTPKQILLYEAL-GWEVPVF-AHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred h-cCHHHHHHHHHHh-CCCCCeE-EEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHH
Confidence 6 4444555556666 5666766 44444 4689999999999 6899999975 577666666654
No 77
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.77 E-value=4.7e-18 Score=173.98 Aligned_cols=249 Identities=16% Similarity=0.099 Sum_probs=154.5
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|++++...++|. +.-.|+..|+|.|. ......+.+.+.++|++||+.+|
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~-----~gG~fiLRiEDTD~-------------~R~~~e~~~~I~~~L~WlGl~wD 66 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ-----QNEDFLIRIEDTDK-------------ERNIEGKDKEILEILNLFGISWD 66 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------CcCChHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999999999998 88999999999994 23455889999999999999999
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------cCcCcccC-CCccc-cccCCC
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------LNYGKLSG-RLISS-NFNKIN 174 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~~yg~l~~-~~~~~-~~~g~v 174 (472)
.. .++|++.+.+.+++++|+++|.||. |||.... +.|...|. ...++ +..|+-
T Consensus 67 e~-y~QSeR~~~Y~~~a~~Li~~G~AY~----------C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~~~g~~ 135 (433)
T PRK12410 67 KL-VYQSENLKFHRQMAEKLLSEKKAFA----------CFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVLNCNKP 135 (433)
T ss_pred CC-eehhccHHHHHHHHHHHHHcCCeee----------ecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHHhcCCC
Confidence 75 5899999999999999999999995 7776431 12322221 11111 111200
Q ss_pred CccccccCccccccccccCCCCCccc-----cccCCCccCCCCCcchhhHhhhhhhCCCceEeee-ccCCcCchhHHHHH
Q psy14486 175 EKNNFKKDPLDFALWKVSKNNDPYEI-----RWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGG-GQDLKFPHHENEIA 248 (472)
Q Consensus 175 ~~~~~k~~~~df~lwk~~~~g~~~~~-----~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~-G~Dl~fpH~~~~~a 248 (472)
.+-..| .|..-..|.....|+.... .|-.--..|.|.+|+.++.- .... .+ .|++ |.|++ +.+...+.
T Consensus 136 ~~iR~k-~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~Dg~PtY~fA~vVD-D~~m--gI-ThViRG~d~l-~~tp~Qi~ 209 (433)
T PRK12410 136 FVVRLK-KPNHTMSFTDAIKGEVSFEPDEIDSFVILRADKTPTYNFACAVD-DMLY--DI-SLIIRGEDHV-SNTPKQIL 209 (433)
T ss_pred eEEEEE-cCCCceeeeeccceeEEeccccCCCeEEEcCCCCccccccchhc-hhhc--CC-CEEEechhhh-hCcHHHHH
Confidence 000000 0000111222112211100 00000123567677655311 1111 22 3444 88865 33333445
Q ss_pred HHhhccCCCC-ceEEEeeeeE-EecCccccccCCCccCHHHHHh-hCChhhHHHHhhhcC--CCCCcccCHHHHH
Q psy14486 249 QSEGAYKHKF-VNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRSH--YRSTINYSEIYLN 318 (472)
Q Consensus 249 ~~~a~~g~~~-~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~--~~~~~~fs~~~l~ 318 (472)
+.+|+ |.+. |.| .|..++ ..+|+||||+.|. .++.++.+ .|.|++++-|++... .. +--|+.+.+.
T Consensus 210 Ly~aL-g~~~pp~f-~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~-~e~~~~~eli 280 (433)
T PRK12410 210 IREAL-GYNKEITY-AHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTP-KEIFTLEEAI 280 (433)
T ss_pred HHHHc-CCCCCCeE-EEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCc-ccccCHHHHH
Confidence 55665 5543 454 666655 5899999999987 58888876 699999999988753 22 2335665553
No 78
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.76 E-value=1.3e-17 Score=173.40 Aligned_cols=253 Identities=15% Similarity=0.078 Sum_probs=161.4
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|+++....++|. ++-.|+..|+|.|. ......+.+.+.++|++||+.+|
T Consensus 10 APSPTG~lHiG~artAL~n~l~Ar~-----~gG~fiLRIEDTD~-------------~R~~~~~~~~i~~~L~WLGl~wD 71 (513)
T PRK14895 10 APSPTGFLHIGSARTALFNYLFARH-----HNGKFLLRIEDTDK-------------ERSTKEAVEAIFSGLKWLGLDWN 71 (513)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEECCCCc-------------cccChHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999999999996 67889999999983 34556899999999999999999
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------cCcCcccCC-CccccccCCCC
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------LNYGKLSGR-LISSNFNKINE 175 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~~yg~l~~~-~~~~~~~g~v~ 175 (472)
.-..++|++.+.+.++.++|+++|.||. |||.... +.|...|.. ..+....|.-.
T Consensus 72 e~py~QSeR~~~Y~~~a~~Li~~G~AY~----------CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~ 141 (513)
T PRK14895 72 GEVIFQSKRNNLYKEAALKLLQNGKAYY----------CFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKP 141 (513)
T ss_pred CCceeEeCcHHHHHHHHHHHHHcCCeEE----------ecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCe
Confidence 5445899999999999999999999995 7876531 123222221 11111111000
Q ss_pred ccccccCc-cccccccccCCCCCccc-----cccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHH
Q psy14486 176 KNNFKKDP-LDFALWKVSKNNDPYEI-----RWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQ 249 (472)
Q Consensus 176 ~~~~k~~~-~df~lwk~~~~g~~~~~-----~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~ 249 (472)
+-..| .| ..-..|.....|+.... .+-.--..|.|.+|+.+. ...... .++-.+-|.|++ +|+...+++
T Consensus 142 ~iR~k-~p~~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~v-VDD~~m--~ithVIRG~d~~-~~t~~q~~l 216 (513)
T PRK14895 142 VIRLK-TPREGSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVV-VDDHDM--GITHIIRGDDHL-TNAARQLAI 216 (513)
T ss_pred eEEEE-cCCCCceEEEeecccceecccccCCCcEEEEeCCCcchhhHHH-HHHHhc--CCCEEEECchHh-hhHHHHHHH
Confidence 00000 00 00111222222322100 000011245677877643 222222 334333688865 444444555
Q ss_pred HhhccCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHh-hCChhhHHHHhhhc--CCCCCcccCHHHHHH
Q psy14486 250 SEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRS--HYRSTINYSEIYLNY 319 (472)
Q Consensus 250 ~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~--~~~~~~~fs~~~l~~ 319 (472)
..++ |.+.|.+ .|..+|. .+|+||||+.|. ..+.++.+ .|.|++++=|++.- ++...--||.+.+.+
T Consensus 217 ~~aL-G~~~p~~-~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~ 287 (513)
T PRK14895 217 YQAF-GYAVPSM-THIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAID 287 (513)
T ss_pred HHHc-CCCCCeE-EEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHh
Confidence 5665 5666754 7778887 899999999998 47888776 69999999998853 233333577777644
No 79
>KOG0434|consensus
Probab=99.76 E-value=3.7e-17 Score=168.60 Aligned_cols=154 Identities=17% Similarity=0.212 Sum_probs=113.8
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhcC-
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSH- 305 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~- 305 (472)
|.|.-.-|.|...-+.--...++.+++|+|+-+..+.||.|+ .+|+|||||+.|+..|..++++||+|++|+||+++|
T Consensus 554 PadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPV 633 (1070)
T KOG0434|consen 554 PADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPV 633 (1070)
T ss_pred chHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCcc
Confidence 567777799998776655666778889987666678899999 589999999999999999999999999999999986
Q ss_pred -CCCCcccCHHHHHHHHHH-HHHHHHHHHhc-------Ccc-----ccccc------cCc-----chhHHHHHHHHHHhc
Q psy14486 306 -YRSTINYSEIYLNYAKKS-LIRLYLAIKDI-------PKI-----NYKKI------IDL-----NEPHAKRFIIAMNDD 360 (472)
Q Consensus 306 -~~~~~~fs~~~l~~~~~~-~~r~~~~~~~~-------~~~-----~~~~~------~~~-----~~~~~~~~~~al~dd 360 (472)
...++.|.++.+.+..+. +--++|.++.+ ... ..+.. .|. .+.+..-+.+.| +.
T Consensus 634 vraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM-~~ 712 (1070)
T KOG0434|consen 634 VRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEM-DQ 712 (1070)
T ss_pred ccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 566899999999887763 22233333221 110 00000 010 135566678899 89
Q ss_pred cChhHHHHHHHHHHHH-HHHHHH
Q psy14486 361 FNTPVAISILFDLANI-INKNKS 382 (472)
Q Consensus 361 ~n~~~al~~l~~l~~~-~N~~~~ 382 (472)
+....++..|..|+.. .|.|+.
T Consensus 713 YrLytVvp~llkfiD~LTNwYiR 735 (1070)
T KOG0434|consen 713 YRLYTVVPRLLKFIDELTNWYIR 735 (1070)
T ss_pred eehhhhHHHHHHHHHHhhhhhee
Confidence 9999999999999986 466653
No 80
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.74 E-value=4.2e-17 Score=171.46 Aligned_cols=252 Identities=19% Similarity=0.190 Sum_probs=163.7
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||||++++.+.++|. |+..++..+||.|.+ +. ...|.+.|.++|++|||.+|
T Consensus 99 aPsPtG~LHiGharaalln~~~Ar~-----~~G~~iLRidDTDp~---R~----------~~e~~~~I~edL~wLGi~~d 160 (560)
T TIGR00463 99 APNPSGPLHIGHARAAILNQYFAKK-----YKGKLIIRFDDTDPR---RV----------KPEAYDMILEDLDWLGVKGD 160 (560)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHh-----cCCEEEEEeCcCCcc---cc----------cHHHHHHHHHHHHHcCCCCC
Confidence 7999999999999999999999985 889999999999974 22 23699999999999999998
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc------cCcCcccC-CCc-------cccccC----
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF------LNYGKLSG-RLI-------SSNFNK---- 172 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~------~~yg~l~~-~~~-------~~~~~g---- 172 (472)
.. +++|+|++.+.+++++|+++|+||. |||.... ..|-.-|+ ... ++|..|
T Consensus 161 ~~-~~qSd~~~~y~~~a~~Li~~G~AY~----------C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~ 229 (560)
T TIGR00463 161 EV-VYQSDRIEEYYDYCRKLIEMGKAYV----------CDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEG 229 (560)
T ss_pred cc-ccccccHHHHHHHHHHHHHcCCcee----------ecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccC
Confidence 65 7999999999999999999999995 5665431 11111111 111 123322
Q ss_pred -----CCCccc--cccCccccccccccCCCCCc-cccccCCCccCCCCCcchhhHhhhhhhCCCceEeee-ccCCcCchh
Q psy14486 173 -----INEKNN--FKKDPLDFALWKVSKNNDPY-EIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGG-GQDLKFPHH 243 (472)
Q Consensus 173 -----~v~~~~--~k~~~~df~lwk~~~~g~~~-~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~-G~Dl~fpH~ 243 (472)
|+..+. .-....|+++++....-.+. +..| .+.|.+++.|+. ..... .+ .|++ |.|+.- .+
T Consensus 230 ~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~-----~~~PtYdfA~~V-DD~l~--gI-THviRg~E~~~-nT 299 (560)
T TIGR00463 230 GKVVVRAKTDYKHKNPAIRDWVIFRINKTPHPRTGDKY-----KVYPTMDFSVPI-DDHLL--GV-THVLRGKDHID-NE 299 (560)
T ss_pred CCeEEEEECCCcCCCccccCcEEEEecCCCccccCCEE-----EEEeccccceEe-ecccC--CC-CeEEechhhhc-CC
Confidence 111111 11122577766542211111 1112 246777766531 11111 12 3443 777653 11
Q ss_pred HHHHHHHhhccCCCCceEEEeeeeEEecC-ccccccCCC---------------ccCHHHHHh-hCChhhHHHHhhhc-C
Q psy14486 244 ENEIAQSEGAYKHKFVNYWMHSGFVKINN-KKMSKSFGN---------------FCTIRDLLK-KYNPEVIRFFILRS-H 305 (472)
Q Consensus 244 ~~~~a~~~a~~g~~~~~~~~h~g~l~~~G-~KMSKS~Gn---------------~i~~~dll~-~~~~d~lR~~ll~~-~ 305 (472)
.....++.++ |.+.|.+ .|.+++.+++ .|+|||+.- ..|+..+.. .+.|++||-|++.. .
T Consensus 300 ~rq~yl~~~l-g~~~P~~-~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~ 377 (560)
T TIGR00463 300 RKQQYIYMYF-GWELPEF-IHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGV 377 (560)
T ss_pred HHHHHHHHHc-CCCCCeE-EEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCC
Confidence 2223333443 5566765 7789998765 599988732 135555554 69999999999997 4
Q ss_pred CCCCcccCHHHHHHHHHH
Q psy14486 306 YRSTINYSEIYLNYAKKS 323 (472)
Q Consensus 306 ~~~~~~fs~~~l~~~~~~ 323 (472)
-..+..++|+.|.+..+.
T Consensus 378 s~~~~~i~~~~l~~~nr~ 395 (560)
T TIGR00463 378 KRNDVNLSWKNIYAFNKK 395 (560)
T ss_pred CCCCceeeHHHHHHHHHH
Confidence 566889999999877653
No 81
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.74 E-value=4.8e-17 Score=170.98 Aligned_cols=254 Identities=17% Similarity=0.157 Sum_probs=165.2
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||||++++...++|. ++-.++..+||.|. ..-...|.+.|.++|++||+.+|
T Consensus 58 APsPtGyLHIGharaAllN~l~Ar~-----~gG~~iLRiEDTDp-------------~R~~~e~~d~IleDL~WLGl~wD 119 (601)
T PTZ00402 58 PPEASGFLHIGHAKAALINSMLADK-----YKGKLVFRFDDTNP-------------SKEKEHFEQAILDDLATLGVSWD 119 (601)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEEcCCCC-------------cccCHHHHHHHHHHHHHCCCCCC
Confidence 6999999999999999999999997 77899999999994 33455899999999999999999
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc----------cCcCcccCC-Cc---cccccC----
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF----------LNYGKLSGR-LI---SSNFNK---- 172 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~----------~~yg~l~~~-~~---~~~~~g---- 172 (472)
.-...+|++.+.+.++.++|+++|+||. |+|.... ..|-.++.. .+ +.+..|
T Consensus 120 e~~~~QSdr~d~y~e~a~~Li~~G~AY~----------c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~ 189 (601)
T PTZ00402 120 VGPTYSSDYMDLMYEKAEELIKKGLAYC----------DKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEG 189 (601)
T ss_pred CceeeccccHHHHHHHHHHHHHcCCEEE----------ecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCC
Confidence 7335899999999999999999999994 4554321 012111110 00 111111
Q ss_pred -----C--CCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeee-ccCCcCchhH
Q psy14486 173 -----I--NEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGG-GQDLKFPHHE 244 (472)
Q Consensus 173 -----~--v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~-G~Dl~fpH~~ 244 (472)
| ++......+..||++.+....-.+. .-..| .+.|.+++.|.. ..... .+ .|++ |.|+. ++..
T Consensus 190 ~~~~lR~kid~~~~n~~~rD~Vl~R~~~~~h~r---tGdk~-dgyPtYdfA~vV-DD~l~--gI-THvlRg~E~l-~~tp 260 (601)
T PTZ00402 190 QETCLRAKISVDNENKAMRDPVIYRVNLTPHAR---QGTKY-KAYPTYDFCCPI-IDSVE--GV-THALRTNEYH-DRND 260 (601)
T ss_pred CceEEEEecccCCCCCCccCCEEEEEcCCcccc---cCCCC-ceeeccCcceee-Ecccc--CC-ceEeechhhh-hCcH
Confidence 1 1111111123466655432110000 00011 355666665521 11111 22 3333 77765 5555
Q ss_pred HHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCc---------------cCHHHHH-hhCChhhHHHHhhhc-CCC
Q psy14486 245 NEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNF---------------CTIRDLL-KKYNPEVIRFFILRS-HYR 307 (472)
Q Consensus 245 ~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~---------------i~~~dll-~~~~~d~lR~~ll~~-~~~ 307 (472)
....+..++ |.+.|.+ .|.+.++.+|.|||||.+.- .|+.-|. ..|.|++||=|+... --.
T Consensus 261 ~q~~L~~aL-g~~~P~~-~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk 338 (601)
T PTZ00402 261 QYYWFCDAL-GIRKPIV-EDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSK 338 (601)
T ss_pred HHHHHHHHh-CCCCceE-EEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 555555665 5666765 66678889999999998852 2333333 369999999999987 566
Q ss_pred CCcccCHHHHHHHHHH
Q psy14486 308 STINYSEIYLNYAKKS 323 (472)
Q Consensus 308 ~~~~fs~~~l~~~~~~ 323 (472)
++..|+++.|....+.
T Consensus 339 ~~~~~d~~~L~~~nr~ 354 (601)
T PTZ00402 339 TVNFMEWSKLWYFNTQ 354 (601)
T ss_pred CCcccCHHHHHHHHHH
Confidence 7889999999887664
No 82
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.73 E-value=4.6e-17 Score=169.95 Aligned_cols=251 Identities=17% Similarity=0.116 Sum_probs=165.9
Q ss_pred EcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Q psy14486 29 VCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQ 108 (472)
Q Consensus 29 ~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~ 108 (472)
=..|+|+|++||||||++++...++|. ++..++..++|.|.. .-...|.+.+.++|++||+.
T Consensus 33 RFaPsPtG~LHiG~ar~al~n~~~Ar~-----~~G~~iLRieDTd~~-------------r~~~e~~~~I~~dL~wLGi~ 94 (554)
T PRK05347 33 RFPPEPNGYLHIGHAKSICLNFGLAQD-----YGGKCNLRFDDTNPE-------------KEDQEYVDSIKEDVRWLGFD 94 (554)
T ss_pred EeCCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCCC-------------cCChHHHHHHHHHHHHcCCC
Confidence 447999999999999999999999997 788999999999943 34558999999999999999
Q ss_pred CCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------cCcCcccC---CCc-------cccc
Q psy14486 109 PPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------LNYGKLSG---RLI-------SSNF 170 (472)
Q Consensus 109 ~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------~~yg~l~~---~~~-------~~~~ 170 (472)
+|.-...+|++.+.+.+..++|+++|.||. |||.... ...|.-|. ... +++.
T Consensus 95 ~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~----------c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~ 164 (554)
T PRK05347 95 WSGELRYASDYFDQLYEYAVELIKKGKAYV----------DDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMR 164 (554)
T ss_pred CCCCceeeecCHHHHHHHHHHHHHcCCEee----------CCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHH
Confidence 976556889999999999999999999995 5665431 01122111 111 1233
Q ss_pred cCC---------CCccccccCc--cccccccccCCCCC-ccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCC
Q psy14486 171 NKI---------NEKNNFKKDP--LDFALWKVSKNNDP-YEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDL 238 (472)
Q Consensus 171 ~g~---------v~~~~~k~~~--~df~lwk~~~~g~~-~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl 238 (472)
+|. ...+-...|+ .|+++.+....-.+ .+..| ...|.+++.| ++|=|..|+.|
T Consensus 165 ~G~~~~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~-----~iyPtYdfA~----------~vdD~l~gITH 229 (554)
T PRK05347 165 AGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKW-----CIYPMYDFAH----------CISDAIEGITH 229 (554)
T ss_pred CCCCCCCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCce-----eeecCcCccc----------eeeccccCCce
Confidence 331 0011111122 46665553211011 01111 1256666665 34444444444
Q ss_pred cC------chhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCC-------c--------cCHHHHHh-hCChhh
Q psy14486 239 KF------PHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGN-------F--------CTIRDLLK-KYNPEV 296 (472)
Q Consensus 239 ~f------pH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn-------~--------i~~~dll~-~~~~d~ 296 (472)
+. .|......+..++...+.|.. ++.++++++|.|||||.+. + .|+..+.. .|.|+|
T Consensus 230 vlRg~E~~~~t~~~~~i~~alg~~~~P~~-~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeA 308 (554)
T PRK05347 230 SLCTLEFEDHRPLYDWVLDNLPIPPHPRQ-YEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPES 308 (554)
T ss_pred EEeccccccChHHHHHHHHHcCCCCCCce-EEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHH
Confidence 33 333334445566633334544 4668899999999999965 2 26888775 699999
Q ss_pred HHHHhhhc-CCCCCcccCHHHHHHHHHH
Q psy14486 297 IRFFILRS-HYRSTINYSEIYLNYAKKS 323 (472)
Q Consensus 297 lR~~ll~~-~~~~~~~fs~~~l~~~~~~ 323 (472)
||-|++.. --..+..++++.|....+.
T Consensus 309 i~nf~~~lG~s~~~~~i~~~~L~~~nRk 336 (554)
T PRK05347 309 IREFCERIGVTKQDSVIDMSMLESCIRE 336 (554)
T ss_pred HHHHHHHhCCCCCCCeecHHHHHHHHHH
Confidence 99999996 4555778999999877653
No 83
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.72 E-value=5.9e-17 Score=158.71 Aligned_cols=221 Identities=15% Similarity=0.060 Sum_probs=143.3
Q ss_pred cCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Q psy14486 30 CGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQP 109 (472)
Q Consensus 30 cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~ 109 (472)
-.|+|+|++||||+|+++....++|. ++..++..|+|.|.. .....+.+.+.++|++|||.+
T Consensus 10 FAPSPTG~LHlG~~rtAL~n~l~Ar~-----~~G~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wlGl~w 71 (299)
T PRK05710 10 FAPSPSGPLHFGSLVAALGSWLDARA-----HGGRWLLRIEDIDPP-------------REVPGAADAILADLEWLGLHW 71 (299)
T ss_pred eCcCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEECcCCCC-------------ccchHHHHHHHHHHHHCCCCC
Confidence 36999999999999999999999888 788999999999852 334588999999999999999
Q ss_pred CCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc------------cCcCcccC-CCccccccC--CC
Q psy14486 110 PDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF------------LNYGKLSG-RLISSNFNK--IN 174 (472)
Q Consensus 110 d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~------------~~yg~l~~-~~~~~~~~g--~v 174 (472)
|.-..++|++.+.+.+++++|+++|.+|. |||+... +.|..-|. ...++.... |+
T Consensus 72 De~~~~QS~r~~~Y~~~~~~L~~~G~aY~----------C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRl 141 (299)
T PRK05710 72 DGPVLYQSQRHDAYRAALDRLRAQGLVYP----------CFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRL 141 (299)
T ss_pred CCCceEeeccHHHHHHHHHHHHHCCCcee----------cCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEE
Confidence 96435789999999999999999999995 5665431 11221111 001110000 11
Q ss_pred Cccc----------------cccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCC
Q psy14486 175 EKNN----------------FKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDL 238 (472)
Q Consensus 175 ~~~~----------------~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl 238 (472)
.... ......||++++ ..|.|.+|+.|+.- .... .++..+-|.|+
T Consensus 142 k~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R----------------~dg~ptY~lA~vVD-D~~~--gIThVvRG~D~ 202 (299)
T PRK05710 142 RVPDAVIAFDDRLQGRQHQDLALAVGDFVLRR----------------ADGLFAYQLAVVVD-DALQ--GVTHVVRGADL 202 (299)
T ss_pred EcCCCceEEEEecceeEeeCCCCCCCCEEEEe----------------cCCCccccchhHHh-cccC--CCCEEEeChhh
Confidence 1100 000112333322 23556677765321 1111 23333338886
Q ss_pred cCchhHHHHHHHhhccCCCCceEEEeeeeE-EecCccccccCCCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 239 KFPHHENEIAQSEGAYKHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 239 ~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
+ +.+...+.+.+++ |.+.|.| .|...+ +.+|+||||+.|. ..+++ ..+.|+ +..++...
T Consensus 203 l-~~t~~Q~~l~~aL-g~~~P~y-~H~pll~~~~g~kLSKr~~~-~~i~~--~g~~p~-l~~~l~~l 262 (299)
T PRK05710 203 L-DSTPRQIYLQQLL-GLPTPRY-LHLPLVLNADGQKLSKQNGA-PALDA--AGPLPV-LAAALRFL 262 (299)
T ss_pred h-hcCHHHHHHHHHc-CCCCCeE-EEeecccCCCCCcccccCCc-cchhh--cCcCHH-HHHHHHHc
Confidence 5 4444444555555 6777876 566666 5899999999887 46666 788888 66665554
No 84
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.72 E-value=1.5e-16 Score=150.11 Aligned_cols=176 Identities=21% Similarity=0.222 Sum_probs=131.2
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|+++....++|. ++..++..++|.|.+ .....+.+.|.++|++||+.+|
T Consensus 7 APsPtG~lHlG~~r~al~n~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~wd 68 (230)
T cd00418 7 APSPTGYLHIGHARTALFNFAFARK-----YGGKFILRIEDTDPE-------------RSRPEYVESILEDLKWLGLDWD 68 (230)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCeEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999999999998 789999999999952 3344899999999999999999
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCcccccccc
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWK 190 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df~lwk 190 (472)
.-..++|++.+.+.+.+++|+++| .+ |.| +|+.--
T Consensus 69 ~~~~~QS~r~~~y~~~~~~L~~~g-g~------------------p~Y--------------------------~la~vv 103 (230)
T cd00418 69 EGPYRQSDRFDLYRAYAEELIKKG-GY------------------PLY--------------------------NFVHPV 103 (230)
T ss_pred CCeeehhcCHHHHHHHHHHHHHcC-CC------------------ccc--------------------------cccccc
Confidence 733589999999999999999998 11 111 111000
Q ss_pred ccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-
Q psy14486 191 VSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK- 269 (472)
Q Consensus 191 ~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~- 269 (472)
.+. .. .++..+-|.|++ +.+.....+..++ |.+.|.| .|...+.
T Consensus 104 --DD~----------------------------~~--gIThViRG~D~l-~st~~q~~l~~~L-g~~~P~~-~H~pll~~ 148 (230)
T cd00418 104 --DDA----------------------------LM--GITHVLRGEDHL-DNTPIQDWLYEAL-GWEPPRF-YHFPRLLL 148 (230)
T ss_pred --ccc----------------------------cc--CCCEEEECHhhh-hchHHHHHHHHHc-CCCCCeE-EEeeeeeC
Confidence 000 00 233444488866 4444445555555 6677876 5666665
Q ss_pred ecCccccccCCCccCHHHHHh-hCChhhHHHHhhhcC
Q psy14486 270 INNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRSH 305 (472)
Q Consensus 270 ~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~ 305 (472)
.+|+|||||.|+ .+++++.+ .+.|++++-|+....
T Consensus 149 ~~g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG 184 (230)
T cd00418 149 EDGTKLSKRKLN-TTLRALRRRGYLPEALRNYLALIG 184 (230)
T ss_pred CCCCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcC
Confidence 577999999999 68988876 599999999988753
No 85
>PLN02627 glutamyl-tRNA synthetase
Probab=99.72 E-value=3.6e-17 Score=170.33 Aligned_cols=248 Identities=13% Similarity=0.061 Sum_probs=154.4
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|++++...++|. ++..|+..|+|.|. ......+.+.+.++|++|||.+|
T Consensus 51 APSPTG~LHiG~aRtAL~n~l~Ar~-----~gG~fiLRIEDTD~-------------~R~~~e~~~~I~~~L~WLGl~wD 112 (535)
T PLN02627 51 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDL-------------ARSTKESEEAVLRDLKWLGLDWD 112 (535)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----hCCEEEEEeCcCCC-------------CCCChHHHHHHHHHHHHcCCCCC
Confidence 4899999999999999999999997 78899999999994 34556899999999999999999
Q ss_pred Cc--------cccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------cCcCcccCC-Ccc
Q psy14486 111 DY--------QPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------LNYGKLSGR-LIS 167 (472)
Q Consensus 111 ~~--------~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~~yg~l~~~-~~~ 167 (472)
.- ..++|++.+.+.+++++|+++|.||. |||.... +.|..-|.. ..+
T Consensus 113 egp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~----------CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~e 182 (535)
T PLN02627 113 EGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYP----------CFCTDEELEAMKEEAELKKLPPRYTGKWATASDE 182 (535)
T ss_pred cCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeee----------ccCChHHHHHHHHHHHhcCCCcCCCCccccCCHH
Confidence 63 13789999999999999999999995 7776531 123222211 111
Q ss_pred c----cccC-----CCCccccccCccccccccccCCCCCccc-----cccCCCccCCCCCcchhhHhhhhhhCCCceEee
Q psy14486 168 S----NFNK-----INEKNNFKKDPLDFALWKVSKNNDPYEI-----RWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHG 233 (472)
Q Consensus 168 ~----~~~g-----~v~~~~~k~~~~df~lwk~~~~g~~~~~-----~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~ 233 (472)
+ +..| |+... .. .. +.|.....|+.... .+-.--..|.|.+|+.|+.- .... .+ .|+
T Consensus 183 e~~~~~~~g~~~~iR~k~p--~~--~~-~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVD-D~~m--gI-THV 253 (535)
T PLN02627 183 EVQAELAKGTPYTYRFRVP--KE--GS-VKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVD-DATM--GI-THV 253 (535)
T ss_pred HHHHHHhCCCCceEEEEcC--CC--Cc-eEEEeeeeeeeeeccccCCCeEEEecCCCccccccceec-cccc--CC-cEE
Confidence 1 1111 11000 00 00 11211111111100 00000123567677665311 0011 12 344
Q ss_pred e-ccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHh-hCChhhHHHHhhhcCCC---
Q psy14486 234 G-GQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRSHYR--- 307 (472)
Q Consensus 234 ~-G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~--- 307 (472)
+ |.|++ +.+...+.+.+|+ |.+.|.| .|..+++ .+|+||||+.|. +++.++.+ .|.|++++-|++...+.
T Consensus 254 iRG~D~l-~nTpkQi~ly~aL-g~~~P~f-~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LGws~~~ 329 (535)
T PLN02627 254 IRAEEHL-PNTLRQALIYKAL-GFPMPRF-AHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLGWNDGT 329 (535)
T ss_pred Eechhhh-cChHHHHHHHHHc-CCCCCeE-EEccceeCCCCCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhCCCCCC
Confidence 4 77754 2333334444554 6777866 5556655 688999999877 68888876 69999999998875332
Q ss_pred CCcccCHHHHHH
Q psy14486 308 STINYSEIYLNY 319 (472)
Q Consensus 308 ~~~~fs~~~l~~ 319 (472)
..--|+.+.+.+
T Consensus 330 ~~e~~~~~eli~ 341 (535)
T PLN02627 330 ENEIFTLEELVE 341 (535)
T ss_pred CCCcCCHHHHHH
Confidence 233577776644
No 86
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.71 E-value=1.2e-16 Score=173.60 Aligned_cols=253 Identities=16% Similarity=0.116 Sum_probs=168.9
Q ss_pred cCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Q psy14486 30 CGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQP 109 (472)
Q Consensus 30 cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~ 109 (472)
-.|+|+|++||||||++++...++|. |+..++..+||.|.. .-...|.+.|.++|++||+.+
T Consensus 36 FaPsPtG~lHiGhar~alln~~~A~~-----~~G~~~LR~eDTd~~-------------r~~~e~~~~I~~dl~wLG~~w 97 (771)
T PRK14703 36 FPPEPNGYLHIGHAKSILLNFGIARD-----YGGRCHLRMDDTNPE-------------TEDTEYVEAIKDDVRWLGFDW 97 (771)
T ss_pred eCcCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeCCCCCC-------------cCChHHHHHHHHHHHHcCCCC
Confidence 36999999999999999999999998 788999999999943 344589999999999999999
Q ss_pred CCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------cCcCcccCCC-c---ccccc
Q psy14486 110 PDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------LNYGKLSGRL-I---SSNFN 171 (472)
Q Consensus 110 d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~~yg~l~~~~-~---~~~~~ 171 (472)
|.-...+|++.+.+.++.++|+++|.||. |||.... ..|-.++..+ + +.+..
T Consensus 98 d~~~~~qS~~~~~y~~~a~~Li~~G~aY~----------c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~ 167 (771)
T PRK14703 98 GEHLYYASDYFERMYAYAEQLIKMGLAYV----------DSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRA 167 (771)
T ss_pred CCCceEeecCHHHHHHHHHHHHHcCCccc----------CcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhC
Confidence 86546899999999999999999999996 5665431 0111111110 1 12333
Q ss_pred C---------CC--CccccccCccccccccccCCCCCccccccCCCcc---CCCCCcchhhHhhhhhhCCCceEeee-cc
Q psy14486 172 K---------IN--EKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGA---GRPGWHIECSAMSCYLLGSHFDIHGG-GQ 236 (472)
Q Consensus 172 g---------~v--~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~---g~PgWhiecsam~~~~~g~~~dih~~-G~ 236 (472)
| |. +....-.+..|+++++....-.+ ..|. +.|.+|+.|. +..... . ..|++ |.
T Consensus 168 G~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~-------~~Gd~~~i~PtYdfa~~-vdD~l~--g-ITHvlRg~ 236 (771)
T PRK14703 168 GEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHY-------RTGDEWCIYPMYDFAHP-LEDAIE--G-VTHSICTL 236 (771)
T ss_pred CCCcCCCeEEEEEeeccCCcccCCCCEEEEEcCCCCC-------CcCCCCCcCCCccccce-eecccc--C-CcEEEecH
Confidence 3 11 11111112357777764211111 1333 3676776652 111111 1 23444 66
Q ss_pred CCcCchhHHHHHHHhhccCCCC-ceEEEeeeeEEecCccccccC-------CCc--------cCHHHHHh-hCChhhHHH
Q psy14486 237 DLKFPHHENEIAQSEGAYKHKF-VNYWMHSGFVKINNKKMSKSF-------GNF--------CTIRDLLK-KYNPEVIRF 299 (472)
Q Consensus 237 Dl~fpH~~~~~a~~~a~~g~~~-~~~~~h~g~l~~~G~KMSKS~-------Gn~--------i~~~dll~-~~~~d~lR~ 299 (472)
|+. ++......+..++.+.++ |.+ .+.+++.+.|.|||||. |-+ .|+..+.. .|.|++||-
T Consensus 237 E~~-~~~~~~~~l~~~l~~~~~~P~~-~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~ 314 (771)
T PRK14703 237 EFE-NNRAIYDWVLDHLGPWPPRPRQ-YEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRD 314 (771)
T ss_pred hhh-hccHHHHHHHHHhCCCCCCcce-eEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHH
Confidence 654 344444455566655543 544 56799999999999998 433 25777765 699999999
Q ss_pred Hhhhc-CCCCCcccCHHHHHHHHHH
Q psy14486 300 FILRS-HYRSTINYSEIYLNYAKKS 323 (472)
Q Consensus 300 ~ll~~-~~~~~~~fs~~~l~~~~~~ 323 (472)
|++.. --..+..++|+.|....+.
T Consensus 315 f~~~lG~s~~~~~i~~~~L~~~~R~ 339 (771)
T PRK14703 315 FADQIGVAKTNSTVDIGVLEFAIRD 339 (771)
T ss_pred HHHHhCCCccCceecHHHHHHHHHH
Confidence 99986 4556778999999887753
No 87
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.71 E-value=3.1e-16 Score=148.16 Aligned_cols=206 Identities=18% Similarity=0.197 Sum_probs=148.3
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|++++...++|. ++..++..|+|.|.. .....+.+.+.++|++||+.+|
T Consensus 7 APsPtG~lHlG~~~~al~~~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~wD 68 (238)
T cd00807 7 PPEPNGYLHIGHAKAILLNFGYAKK-----YGGRCNLRFDDTNPE-------------KEEEEYVDSIKEDVKWLGIKPY 68 (238)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEecCCCCc-------------ccchHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999999999988 778999999999943 3455899999999999999999
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCcccccccc
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWK 190 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df~lwk 190 (472)
.. .++|++.+.+.+++++|+++|.+|... . -| .+|.+
T Consensus 69 ~~-~~QS~r~~~Y~~~~~~L~~~g~aY~~~-----~-----------~~------------------------~~~~i-- 105 (238)
T cd00807 69 KV-TYASDYFDQLYEYAEQLIKKGKAYVHH-----R-----------TG------------------------DKWCI-- 105 (238)
T ss_pred Cc-eecccCHHHHHHHHHHHHHcCCeecCC-----C-----------CC------------------------CCEEE--
Confidence 54 589999999999999999999999631 0 00 01111
Q ss_pred ccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEe
Q psy14486 191 VSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKI 270 (472)
Q Consensus 191 ~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~ 270 (472)
+|.+++.|+. -.... .++..+-|.|++ +.+...+.+..++ |.+.|.+ +|.++++.
T Consensus 106 -------------------~ptY~lA~vV-DD~~~--gIThVvRG~D~l-~~t~~Q~~l~~aL-g~~~P~~-~~~~hln~ 160 (238)
T cd00807 106 -------------------YPTYDFAHPI-VDSIE--GITHSLCTLEFE-DRRPSYYWLCDAL-RLYRPHQ-WEFSRLNL 160 (238)
T ss_pred -------------------EeccccceEe-ecccc--CCCeEEechhhh-cCCHHHHHHHHHc-CCCCCce-eEEEEECC
Confidence 1223333210 00111 233334488876 4444445555665 5666765 45578899
Q ss_pred cCccccccCCCc---------------cCHHHHHh-hCChhhHHHHhhhc-CCCCCcccCHHHHHHHHH
Q psy14486 271 NNKKMSKSFGNF---------------CTIRDLLK-KYNPEVIRFFILRS-HYRSTINYSEIYLNYAKK 322 (472)
Q Consensus 271 ~G~KMSKS~Gn~---------------i~~~dll~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~ 322 (472)
+|.|+||+.+.. .++..+.. .+.|++++-|++.. --.++..|+++.|....+
T Consensus 161 ~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr 229 (238)
T cd00807 161 TYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVR 229 (238)
T ss_pred CCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 999999999631 23445443 69999999999986 566789999999976654
No 88
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.71 E-value=5.1e-17 Score=157.43 Aligned_cols=241 Identities=12% Similarity=-0.021 Sum_probs=143.9
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|++++...++|. ++..++..|+|.|.. .....+.+.|.++|++|||.+|
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar~-----~gG~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wLGl~wD 67 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDARA-----HGGRWLVRIEDLDPP-------------REVPGAADDILRTLEAYGLHWD 67 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999999999997 788999999999952 2344788999999999999999
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc---------cCcCcccCCCccccccC-----CCCc
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF---------LNYGKLSGRLISSNFNK-----INEK 176 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~---------~~yg~l~~~~~~~~~~g-----~v~~ 176 (472)
.-..++|++.+.+.+++++|+++|.||. |||+... +.|..-|.... ....+ |+..
T Consensus 68 e~~~~QS~r~~~Y~~~~~~L~~~G~aY~----------C~Ct~eel~~~~~~~~~~y~~~cr~~~-~~~~~~~~~~Rlk~ 136 (272)
T TIGR03838 68 GEVVYQSQRHALYQAALDRLLAAGLAYP----------CQCTRKEIAAAAGDGGGIYPGTCRNGL-LGRPARPAAWRLRV 136 (272)
T ss_pred CCeeeeeCCHHHHHHHHHHHHHcCCEEe----------cCCCHHHHHHHhcCCCCCCCchhhccc-ccccCCCceEEEec
Confidence 6534899999999999999999999995 6666431 12332222100 00011 1111
Q ss_pred cccccCccccccccccCCCCCc------cccccCCCccCCCCCcchhhHhhhhhhCCCceEeee-ccCCcCchhHHHHHH
Q psy14486 177 NNFKKDPLDFALWKVSKNNDPY------EIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGG-GQDLKFPHHENEIAQ 249 (472)
Q Consensus 177 ~~~k~~~~df~lwk~~~~g~~~------~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~-G~Dl~fpH~~~~~a~ 249 (472)
.. . + ..|.....|+.. ...+..--..|.|.+|+.|+.- .... .+ .|++ |.|++ +.+...+.+
T Consensus 137 ~~--~---~-~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY~fA~vVD-D~~~--gI-ThViRG~D~l-~~t~~q~~l 205 (272)
T TIGR03838 137 PD--G---V-IAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAYQLAVVVD-DAAQ--GI-THVVRGADLL-DSTPRQIYL 205 (272)
T ss_pred CC--C---C-ceEEEeeeeEEEecCcccCCCEEEEecCCCccccChhhhh-cccC--CC-CEEEeCHhhh-hccHHHHHH
Confidence 00 0 0 001111111100 0000001123567777766321 1111 22 3443 77755 333344445
Q ss_pred HhhccCCCCceEEEeeeeE-EecCccccccCCCccCHHHHHhhCChhhHHHHhhhc--C-CCCCcccCHHHH
Q psy14486 250 SEGAYKHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS--H-YRSTINYSEIYL 317 (472)
Q Consensus 250 ~~a~~g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~--~-~~~~~~fs~~~l 317 (472)
.+++ |.+.|.| .|...+ +.+|+|+|||.|.. +++++ -.+.++..++... . ....-.||.+.|
T Consensus 206 ~~aL-g~~~P~y-~H~pll~~~~g~kLSKR~~~~-~i~~~---~~~~~~~~~l~~lG~~~~~~~~~~~~~~~ 271 (272)
T TIGR03838 206 QRLL-GLPPPRY-LHLPLVVNADGEKLSKQNGAP-ALDLS---HPLPALLAALRFLGLPPPPELAAASPAEL 271 (272)
T ss_pred HHHh-CCCCCeE-EechhhhCCCCCeeeccCCcc-chhcC---CcHHHHHHHHHHcCCCCCcccccCCHHHh
Confidence 5555 6666765 666766 68999999998873 44443 1334555554443 2 222335666554
No 89
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=7.7e-17 Score=166.79 Aligned_cols=250 Identities=18% Similarity=0.136 Sum_probs=155.0
Q ss_pred EEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Q psy14486 28 YVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHI 107 (472)
Q Consensus 28 y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI 107 (472)
.=..|+|+|++||||||++++-..++|. |+-.|+..++|.|. ..-...+.+.+.++|++||+
T Consensus 12 tRFAPsPtG~LHiG~artAl~N~~~Ar~-----~~G~fiLRiEDTD~-------------~R~~~e~~~~I~~~L~WLGl 73 (472)
T COG0008 12 TRFAPSPTGYLHIGHARTALLNYLYARK-----YGGKFILRIEDTDP-------------ERETPEAEDAILEDLEWLGL 73 (472)
T ss_pred EEECcCCCCccchHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC-------------CCCCHHHHHHHHHHHHhcCC
Confidence 3447999999999999999999999999 88999999999995 33445899999999999999
Q ss_pred CCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------c-CcCcccC-CCc-cccc
Q psy14486 108 QPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------L-NYGKLSG-RLI-SSNF 170 (472)
Q Consensus 108 ~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~-~yg~l~~-~~~-~~~~ 170 (472)
.+|.-..++|++.+.+.+++++|+++|.||. |||+... | .|..-+. ... +.+.
T Consensus 74 ~wde~~~~QS~r~~~Y~~~~~~Li~~G~AY~----------c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~ 143 (472)
T COG0008 74 DWDEGPYYQSERFDIYYEYAEKLIEKGKAYV----------CYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMA 143 (472)
T ss_pred CCCCceeehhhhHHHHHHHHHHHHHCCCeEE----------ecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHh
Confidence 9998446899999999999999999999995 7777621 1 2222111 001 1111
Q ss_pred c---C-----CCCccccccCccccccccccCCCCCccccccC-CCc------cCCCCCcchhhHhhhhhhCCCceEeee-
Q psy14486 171 N---K-----INEKNNFKKDPLDFALWKVSKNNDPYEIRWNS-KWG------AGRPGWHIECSAMSCYLLGSHFDIHGG- 234 (472)
Q Consensus 171 ~---g-----~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~-~wG------~g~PgWhiecsam~~~~~g~~~dih~~- 234 (472)
. | |+.......++ .|.....|+.. +.. -++ .|.|.+++.|. ......| ..|++
T Consensus 144 ~~~~~~~~viR~k~~~~~~~~----~~~D~v~g~i~---~~~~~~~dv~~r~dg~ptY~favv-vDD~~mg---ITHviR 212 (472)
T COG0008 144 DLGEGGPAVVRLKIPMAHPGP----VFRDLVRGRIV---FAPKHPDFVILRYDGYPTYNFAVV-VDDHLMG---ITHVLR 212 (472)
T ss_pred hcccCCCeEEEEeCCCCCCCC----ccccceeeeEe---cCccCCcceeecCCCCcccceeee-echhhcC---CceEEe
Confidence 1 1 11111000111 11111111111 111 111 23355555432 1111111 24555
Q ss_pred ccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEe-cCccccccCCCccCHHHHH-hhCChhhHHHHhhhcC----CCC
Q psy14486 235 GQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKI-NNKKMSKSFGNFCTIRDLL-KKYNPEVIRFFILRSH----YRS 308 (472)
Q Consensus 235 G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~-~G~KMSKS~Gn~i~~~dll-~~~~~d~lR~~ll~~~----~~~ 308 (472)
|.|++ ..+...+.+.+++ |.+.|.| .|.+.++. +|+|||||.| .+.+.++. ..|.+.+++-++..-. ...
T Consensus 213 G~d~~-~nt~~q~~l~~~l-g~~~P~~-~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~~~~ 288 (472)
T COG0008 213 GEDHL-DNTPRQIWLYEAL-GWPPPVY-AHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYPPEA 288 (472)
T ss_pred chhhc-cCCHHHHHHHHHc-CCCCCcE-EEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHHhcCCCChhh
Confidence 88866 4444455555665 6777876 66677775 5669999999 67777654 5688888888775531 233
Q ss_pred CcccCHHHHHHH
Q psy14486 309 TINYSEIYLNYA 320 (472)
Q Consensus 309 ~~~fs~~~l~~~ 320 (472)
.-.|+.+.+...
T Consensus 289 ~e~f~~~~~~~~ 300 (472)
T COG0008 289 IEIFSLEEGIKW 300 (472)
T ss_pred HHHHHHHHHHhh
Confidence 345555554433
No 90
>PLN02907 glutamate-tRNA ligase
Probab=99.69 E-value=3.3e-16 Score=170.61 Aligned_cols=254 Identities=17% Similarity=0.194 Sum_probs=166.9
Q ss_pred cCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Q psy14486 30 CGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQP 109 (472)
Q Consensus 30 cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~ 109 (472)
-.|+|+|++||||||++++...++|. |+-.++..+||.|. ..-...|.+.|.++|++||+.+
T Consensus 218 FaPsPtG~LHiG~ar~al~n~~~Ar~-----~~G~~iLR~eDTdp-------------~r~~~e~~~~I~~dl~wLG~~~ 279 (722)
T PLN02907 218 FPPEPSGYLHIGHAKAALLNQYFARR-----YKGKLIVRFDDTNP-------------SKESDEFVENILKDIETLGIKY 279 (722)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC-------------CcCChHHHHHHHHHHHHcCCCC
Confidence 37999999999999999999999997 77899999999995 2334489999999999999999
Q ss_pred CCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc----c--cCcCcccC-CCc-------cccccC---
Q psy14486 110 PDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN----F--LNYGKLSG-RLI-------SSNFNK--- 172 (472)
Q Consensus 110 d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~----~--~~yg~l~~-~~~-------~~~~~g--- 172 (472)
|.. .++|++.+.+.++.++|+++|.||.- +|... . ..|..-|+ ... ++|..|
T Consensus 280 d~~-~~qS~r~~~y~~~a~~Li~~G~aY~~----------~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~ 348 (722)
T PLN02907 280 DAV-TYTSDYFPQLMEMAEKLIKEGKAYVD----------DTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSER 348 (722)
T ss_pred CCc-ccccccHHHHHHHHHHHHHcCCeeec----------CCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhccccc
Confidence 976 68999999999999999999999963 22211 0 01211111 111 223332
Q ss_pred ------CCCcc--ccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeee-ccCCcCchh
Q psy14486 173 ------INEKN--NFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGG-GQDLKFPHH 243 (472)
Q Consensus 173 ------~v~~~--~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~-G~Dl~fpH~ 243 (472)
|...+ ..-.+..|+++.+....-.+. .-..| .+.|.+++.|.. ..... .+ .|++ |.|++ ++.
T Consensus 349 ~~~~~lR~k~d~~~~n~~~~D~v~~R~~~~~h~~---~gd~~-~~~PtY~fa~~v-dD~~~--gI-ThvlRg~e~~-~~t 419 (722)
T PLN02907 349 GLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHR---IGSKY-KVYPTYDFACPF-VDALE--GV-THALRSSEYH-DRN 419 (722)
T ss_pred CCCeEEEEEcccCCCCCCcccCEEEEecCCcccc---cCCcc-ceeeccCCceEE-EcccC--CC-ceEeecHhhh-hCh
Confidence 11111 111122477665542111111 22233 566777766521 11111 12 3333 66644 333
Q ss_pred HHHHHHHhhccCCCCceEEEeeeeEEecCccccccC-------CCc--------cCHHHHHh-hCChhhHHHHhhhc-CC
Q psy14486 244 ENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSF-------GNF--------CTIRDLLK-KYNPEVIRFFILRS-HY 306 (472)
Q Consensus 244 ~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~-------Gn~--------i~~~dll~-~~~~d~lR~~ll~~-~~ 306 (472)
.....+..++ |.+.|.+ .|.++++++|.|||||. |-+ .|++.+.. .|.|++||-|+... .-
T Consensus 420 ~~q~~l~~~l-g~~~p~~-~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s 497 (722)
T PLN02907 420 AQYYRILEDM-GLRKVHI-WEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGAS 497 (722)
T ss_pred HHHHHHHHHc-CCCCCee-EEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 3344444555 5666654 56689999999999999 332 35677654 59999999999987 56
Q ss_pred CCCcccCHHHHHHHHHH
Q psy14486 307 RSTINYSEIYLNYAKKS 323 (472)
Q Consensus 307 ~~~~~fs~~~l~~~~~~ 323 (472)
.++..|+++.|....+.
T Consensus 498 ~~~~~~~~~~l~~~nr~ 514 (722)
T PLN02907 498 KNLNLMEWDKLWTINKK 514 (722)
T ss_pred cCCccccHHHHHHHHHH
Confidence 67889999999877653
No 91
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.66 E-value=1.5e-16 Score=158.62 Aligned_cols=234 Identities=20% Similarity=0.181 Sum_probs=139.5
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|++++...++|. ++-.++..++|.|.+ .....+.+.+.++|++||+.+|
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~i~~~L~wlGl~~D 68 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFARK-----YGGKFILRIEDTDPE-------------RCRPEFYDAILEDLRWLGLEWD 68 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHHH-----TTSEEEEEEETSSTT-------------TCHHHHHHHHHHHHHHHT---S
T ss_pred CCCCCCCcccchhHHHHHHHHHHhc-----cCceEEEeccccccc-------------cchhhHHHHHHhheeEEEEecC
Confidence 5999999999999999999999998 888999999999953 2334888999999999999998
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc----------------cCcCcccCCCc-cccc---
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF----------------LNYGKLSGRLI-SSNF--- 170 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~----------------~~yg~l~~~~~-~~~~--- 170 (472)
.-...+|++.+.+.+++++|+++|.+|. |||.+.. +.|..-|.... +++.
T Consensus 69 ~~~~~QS~r~~~Y~~~~~~L~~~g~aY~----------C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~ 138 (314)
T PF00749_consen 69 YGPYYQSDRLEIYQEAAEKLIDKGKAYP----------CFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGL 138 (314)
T ss_dssp TCEEEGGGGHHHHHHHHHHHHHTTSEEE----------EESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHH
T ss_pred CeEEeHHHHHHHHHHHHHHHhhcCCCcc----------ccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhh
Confidence 5556899999999999999999999995 8887632 11222111111 1111
Q ss_pred -cC-----CCCccccccCccccccccccCCCCCccccccCCC-------ccCCCCCcchhhHhhhhhhCCCceEeeeccC
Q psy14486 171 -NK-----INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKW-------GAGRPGWHIECSAMSCYLLGSHFDIHGGGQD 237 (472)
Q Consensus 171 -~g-----~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~w-------G~g~PgWhiecsam~~~~~g~~~dih~~G~D 237 (472)
.| |+.... ..+ ..|.....|.... -.... ..|.|.+|+.|+. -.... .++..+-|.|
T Consensus 139 ~~~~~~~iRlk~~~--~~~---~~~~D~v~g~i~~--~~~~~~D~vi~r~dg~ptY~fA~vV-DD~~~--gITHViRG~D 208 (314)
T PF00749_consen 139 AKGGPAVIRLKVPM--ESP---IAFRDLVRGRIIF--DPSDLGDFVIRRSDGYPTYHFAVVV-DDHLM--GITHVIRGED 208 (314)
T ss_dssp HTTTSEEEEE-SSS--TCC---EEEEETTTEEEEE--EGGGSBTEEEESTTSEB-HHHHHHH-HHHHT--T-SEEEEEGG
T ss_pred ccCCceeeeeeccc--ccc---cccccCcceeeee--ccccCCchhccccccCcccccceee-ccccc--ccCeEEEccc
Confidence 11 111110 000 1111111111100 00000 1244556665431 11122 2333344999
Q ss_pred CcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCcc-CHHHHHh-hCChhhHHHHhhhc
Q psy14486 238 LKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFC-TIRDLLK-KYNPEVIRFFILRS 304 (472)
Q Consensus 238 l~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i-~~~dll~-~~~~d~lR~~ll~~ 304 (472)
++ +.+...+.+..++ |.+.|.|..+...++.+|+|+|||.+... .+.++.+ .+.|+++--++...
T Consensus 209 ~l-~~t~~Q~~L~~~L-g~~~P~~~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~l 275 (314)
T PF00749_consen 209 LL-SSTPRQILLYEAL-GWPPPPYAHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARL 275 (314)
T ss_dssp GT-TCHHHHHHHHHHC-TSSS-EEEEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHT
T ss_pred cc-cccHHHHHHHHHh-CCCCcceEeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHh
Confidence 87 4555556666666 66667775555666789999999998852 3666654 47887776666654
No 92
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.66 E-value=2e-15 Score=143.67 Aligned_cols=190 Identities=17% Similarity=0.158 Sum_probs=136.2
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|+++....++|. +...++..++|.|.+ .-...+.+.+.++|++|||.+|
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar~-----~~G~~ilRieDtd~~-------------r~~~~~~~~i~~dL~wlGl~~d 68 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFARK-----HGGKFILRIEDTDQE-------------RSVPEAEEAILEALKWLGLDWD 68 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCeEEEEECcCCCC-------------CCchHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999999999887 667899999998842 2334888999999999999999
Q ss_pred Cc--------cccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccC
Q psy14486 111 DY--------QPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKD 182 (472)
Q Consensus 111 ~~--------~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~ 182 (472)
.- ...+|++.+.+.++.++|+++|..+ +.|
T Consensus 69 ~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~gdg~------------------ptY------------------------ 106 (239)
T cd00808 69 EGPDVGGPYGPYRQSERLEIYRKYAEKLLEKGDGF------------------PTY------------------------ 106 (239)
T ss_pred cCCccCCCCCCEeeeCCHHHHHHHHHHHHHcCCCC------------------ccc------------------------
Confidence 71 2478899999999999998876111 111
Q ss_pred ccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEE
Q psy14486 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYW 262 (472)
Q Consensus 183 ~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~ 262 (472)
+|+ +++ -.... .++..+-|.|+. .|.....++..++ |.+.|.++
T Consensus 107 --~~a-----------------------------~~v-DD~~~--~ithViRG~D~~-~~t~~q~~l~~aL-g~~~p~~~ 150 (239)
T cd00808 107 --HLA-----------------------------NVV-DDHLM--GITHVIRGEEHL-SSTPKQILLYEAL-GWEPPKFA 150 (239)
T ss_pred --ccH-----------------------------HHH-hHHhc--CCCEEEEChhhh-hChHHHHHHHHHc-CCCCCceE
Confidence 111 100 00001 334445588876 6666667777776 66777775
Q ss_pred EeeeeEEecCccccccCCCccCHHHHHh-hCChhhHHHHhhhcCCC---CCcccCHHHH
Q psy14486 263 MHSGFVKINNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRSHYR---STINYSEIYL 317 (472)
Q Consensus 263 ~h~g~l~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~---~~~~fs~~~l 317 (472)
++.-.++.+|.|||||.|+ .+++.+.+ .+.|++++.|++..... .+.-++.+.+
T Consensus 151 h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l 208 (239)
T cd00808 151 HLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEEL 208 (239)
T ss_pred eeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHH
Confidence 5444447899999999999 68888875 69999999998874322 2234565554
No 93
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.66 E-value=8.8e-16 Score=160.10 Aligned_cols=247 Identities=17% Similarity=0.136 Sum_probs=154.4
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||||++++...++|. ++..++..++|.|. ..-...|.+.|.++|++||+.+|
T Consensus 6 aPsPtG~LHiG~ar~al~n~~~A~~-----~~G~~iLRieDTd~-------------~r~~~e~~~~I~~dL~wLG~~~d 67 (522)
T TIGR00440 6 PPEPNGYLHIGHAKSICLNFGYAKY-----YNGTCNLRFDDTNP-------------VKEDPEYVESIKRDVEWLGFKWE 67 (522)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEEcCCCc-------------ccCChHHHHHHHHHHHHcCCCCC
Confidence 6999999999999999999999997 78899999999995 23345899999999999999997
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc----c----CcCcccC---CCc-------cccccC
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF----L----NYGKLSG---RLI-------SSNFNK 172 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~----~----~yg~l~~---~~~-------~~~~~g 172 (472)
.-...+|++.+.+.++.++|+++|.||. |||.... . ..|.-|. ... ++|.+|
T Consensus 68 ~~~~~qS~~~~~~~~~a~~Li~~G~AY~----------c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G 137 (522)
T TIGR00440 68 GKIRYSSDYFDELYRYAEELIKKGLAYV----------DELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDG 137 (522)
T ss_pred CCceEccccHHHHHHHHHHHHHcCCEEe----------ecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcC
Confidence 6546789999999999999999999995 5665431 0 1111111 111 123333
Q ss_pred C---------CCccccccC--ccccccccccCCCCCc-cccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcC
Q psy14486 173 I---------NEKNNFKKD--PLDFALWKVSKNNDPY-EIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKF 240 (472)
Q Consensus 173 ~---------v~~~~~k~~--~~df~lwk~~~~g~~~-~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~f 240 (472)
. ...+....+ -.|++..+......+. +. .| ...|-++..| ++|=|..|+-|+.
T Consensus 138 ~~~~g~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~~~gd----k~-~iyPtYdfa~----------~vdD~l~gITHvi 202 (522)
T TIGR00440 138 KFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGT----KW-CIYPMYDFTH----------CISDAMENITHSL 202 (522)
T ss_pred cccCCCeEEEEeCcCCCCCceEeeeeEEEEecCCCCCCCC----Ce-eEEeCcCCce----------eehhccCCCceEe
Confidence 1 111100011 1344433221111000 00 11 1256666554 3443444444333
Q ss_pred c---hhHHHHHHHhhcc---CCC-CceEEEeeeeEEecCccccccCCCc---------------cCHHHHHh-hCChhhH
Q psy14486 241 P---HHENEIAQSEGAY---KHK-FVNYWMHSGFVKINNKKMSKSFGNF---------------CTIRDLLK-KYNPEVI 297 (472)
Q Consensus 241 p---H~~~~~a~~~a~~---g~~-~~~~~~h~g~l~~~G~KMSKS~Gn~---------------i~~~dll~-~~~~d~l 297 (472)
- |..|. .+..++. +.. .|.+ ++.++++++|.|||||.+.. .|+..+.. .|.|+||
T Consensus 203 Rg~E~~~nt-~~Y~~~~~~l~~~~~P~~-~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi 280 (522)
T TIGR00440 203 CTLEFQDNR-RLYDWVLDNIHIFPRPAQ-YEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASI 280 (522)
T ss_pred ecHhhhhcH-HHHHHHHHhcCccCCCce-EEEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHH
Confidence 2 22222 2222221 221 3544 36688999999999999874 48888876 6999999
Q ss_pred HHHhhhcCCCC-CcccCHHHHHHHHH
Q psy14486 298 RFFILRSHYRS-TINYSEIYLNYAKK 322 (472)
Q Consensus 298 R~~ll~~~~~~-~~~fs~~~l~~~~~ 322 (472)
|-|++.....+ +...++..+++..+
T Consensus 281 ~nfl~~lG~s~~~~~~e~~~l~~~~r 306 (522)
T TIGR00440 281 REFCNRIGVTKQDNNIEVVRLESCIR 306 (522)
T ss_pred HHHHHHhCCCCCCCceehhhHHHHHH
Confidence 99999974443 33456777766554
No 94
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.65 E-value=1.9e-15 Score=157.76 Aligned_cols=256 Identities=18% Similarity=0.107 Sum_probs=167.5
Q ss_pred CCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy14486 22 PGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQED 101 (472)
Q Consensus 22 ~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 101 (472)
+|+|. .=-.|+|+|++||||||++++...++|. ++..++..++|.|. ..-...|.+.|.++
T Consensus 49 ~gkv~-tRFaPsPtG~LHiGharaalln~~~Ar~-----~gG~~iLRiEDTDp-------------~r~~~e~~~~I~~d 109 (574)
T PTZ00437 49 GGKPY-FRFPPEPNGFLHIGHAKSMNLNFGSARA-----HGGKCYLRYDDTNP-------------ETEEQVYIDAIMEM 109 (574)
T ss_pred CCcEE-EEeCCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCc-------------cccChHHHHHHHHH
Confidence 34543 3446999999999999999999999998 78899999999993 34556899999999
Q ss_pred HHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc----cCcCc------ccCC-C---cc
Q psy14486 102 SLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF----LNYGK------LSGR-L---IS 167 (472)
Q Consensus 102 l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~----~~yg~------l~~~-~---~~ 167 (472)
|++||+.+|.. +.+|+|.+.+.++.++|+++|.||. |||.... ..-|. ++.. + .+
T Consensus 110 L~wLGi~~D~~-~~qS~y~~~~ye~A~~Li~~G~AY~----------C~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe 178 (574)
T PTZ00437 110 VKWMGWKPDWV-TFSSDYFDQLHEFAVQLIKDGKAYV----------DHSTPDELKQQREQREDSPWRNRSVEENLLLFE 178 (574)
T ss_pred HHHcCCCCCCC-CcCchhHHHHHHHHHHHHHcCCEEE----------cCCCHHHHHHHhhcccCCccccCCHHHHHHHHH
Confidence 99999999876 5889999988899999999999995 6665431 01111 1110 0 11
Q ss_pred ccccC---------CCCccccccC--ccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeecc
Q psy14486 168 SNFNK---------INEKNNFKKD--PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQ 236 (472)
Q Consensus 168 ~~~~g---------~v~~~~~k~~--~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~ 236 (472)
+|..| |+..+....| ..|++.........+. --..| .+.|-+++.| ++|=|..|+
T Consensus 179 ~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~---~gdk~-~iyPtYdFa~----------~vdD~l~gI 244 (574)
T PTZ00437 179 HMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPH---AKDKW-CIYPSYDFTH----------CLIDSLEDI 244 (574)
T ss_pred HHhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCC---CCCce-EEEccCcccc----------eeechhcCC
Confidence 23333 1111111112 2344443221111111 01223 4567666655 567777777
Q ss_pred CCcCchhHHHH------HHHhhccCCCCceEEEeeeeEEecCccccccCCCc---------------cCHHHHHh-hCCh
Q psy14486 237 DLKFPHHENEI------AQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNF---------------CTIRDLLK-KYNP 294 (472)
Q Consensus 237 Dl~fpH~~~~~------a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~---------------i~~~dll~-~~~~ 294 (472)
-|+.--.|.+. -+..++ +..-|.. .+.+-++++|.|||||+... .|+..+.. .|.|
T Consensus 245 THvlct~Ef~~r~~~y~wl~~~l-~l~~p~~-~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~p 322 (574)
T PTZ00437 245 DYSLCTLEFETRRESYFWLLEEL-NLWRPHV-WEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTP 322 (574)
T ss_pred CEEeeechhhcccHHHHHHHHHh-CCcccce-EeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCH
Confidence 77652111111 112333 3222433 35588999999999999874 47777765 5999
Q ss_pred hhHHHHhhhc-CCCCCcccCHHHHHHHHHH
Q psy14486 295 EVIRFFILRS-HYRSTINYSEIYLNYAKKS 323 (472)
Q Consensus 295 d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~ 323 (472)
++||-|++.. --+++..++++.|++..+.
T Consensus 323 eAi~~f~~~~G~sk~~~~i~~~~Le~~nR~ 352 (574)
T PTZ00437 323 AAINRFCELVGITRSMNVIQISMLENTLRE 352 (574)
T ss_pred HHHHHHHHHhCCCccceEeeHHHHHHHHHH
Confidence 9999999997 4556788999999887653
No 95
>PLN02859 glutamine-tRNA ligase
Probab=99.63 E-value=2e-15 Score=162.42 Aligned_cols=271 Identities=15% Similarity=0.089 Sum_probs=164.4
Q ss_pred eecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCC
Q psy14486 7 YNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNES 86 (472)
Q Consensus 7 ~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~ 86 (472)
+||...-++.+.- ..|+|..= -+|.|+|++||||||++++...++|. ++..++..+||.|.
T Consensus 248 ~~~~~~~~~hl~~-t~g~V~tR-FaPsPtG~LHiGharaallN~~~Ar~-----~~G~~~LRieDTdp------------ 308 (788)
T PLN02859 248 SNTKEILEKHLKA-TGGKVYTR-FPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGCCYLRFDDTNP------------ 308 (788)
T ss_pred cCcHHHHHHHHhh-cCCceEEE-eCCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC------------
Confidence 3444433344433 34555432 35999999999999999999999998 77899999999993
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc-----------
Q psy14486 87 IKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF----------- 155 (472)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~----------- 155 (472)
..-...|.+.+.++|++||+.++.. .++|+|.+.+-+...+|+++|.||. |||....
T Consensus 309 -~r~~~e~~~~I~edL~WLG~~~d~~-~~qSd~f~~~Y~~A~~Li~~G~AY~----------C~ct~eei~~~R~~~~~s 376 (788)
T PLN02859 309 -EAEKKEYIDHIEEIVEWMGWEPFKI-TYTSDYFQELYELAVELIRRGHAYV----------DHQTPEEIKEYREKKMNS 376 (788)
T ss_pred -CccchHHHHHHHHHHHHcCCCCCCc-ccccHhHHHHHHHHHHHHHcCCeEe----------ccCCHHHHHHHHhhhccC
Confidence 3445589999999999999998765 5889999877778889999999995 5665431
Q ss_pred cCcCcccC-CC---ccccccC---------CCCcc--ccccCccccccccccCCCCC-ccccccCCCccCCCCCcchhhH
Q psy14486 156 LNYGKLSG-RL---ISSNFNK---------INEKN--NFKKDPLDFALWKVSKNNDP-YEIRWNSKWGAGRPGWHIECSA 219 (472)
Q Consensus 156 ~~yg~l~~-~~---~~~~~~g---------~v~~~--~~k~~~~df~lwk~~~~g~~-~~~~w~~~wG~g~PgWhiecsa 219 (472)
+.+. .+. .. .++|..| |...+ .....-.|.+..+......+ .+ ..|= ..|.+++.|..
T Consensus 377 p~Rd-~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtg----dk~~-iyPtYdFA~~v 450 (788)
T PLN02859 377 PWRD-RPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAG----DKWC-IYPSYDYAHCI 450 (788)
T ss_pred CCCC-CChHHhhhhhHHHHhchhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccC----CCeE-EEecccccccc
Confidence 1110 000 00 1222222 11111 00111124333221100000 00 1221 25666655421
Q ss_pred hhhhhhCCCceEeee-ccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCc---------------c
Q psy14486 220 MSCYLLGSHFDIHGG-GQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNF---------------C 283 (472)
Q Consensus 220 m~~~~~g~~~dih~~-G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~---------------i 283 (472)
..... .+ .|++ |.|+. ++..-..-+..++ |...|.+ .|.+.++++|.|||||++.. .
T Consensus 451 -dD~le--gI-THvLRg~E~~-~~~~~y~wl~~aL-g~~~P~~-~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~ 523 (788)
T PLN02859 451 -VDSLE--NI-THSLCTLEFE-TRRASYYWLLDSL-GLYQPYV-WEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLL 523 (788)
T ss_pred -ccccc--CC-ceEeechhhh-cCCHHHHHHHHHc-CCCCCcE-EeeeeECCCCCcccCcCchhccccCcccCCCCCcch
Confidence 11111 11 3333 55533 3333333444555 5555655 56788889999999999764 4
Q ss_pred CHHHHHh-hCChhhHHHHhhhcCCC-CCc-ccCHHHHHHHH
Q psy14486 284 TIRDLLK-KYNPEVIRFFILRSHYR-STI-NYSEIYLNYAK 321 (472)
Q Consensus 284 ~~~dll~-~~~~d~lR~~ll~~~~~-~~~-~fs~~~l~~~~ 321 (472)
|+..+.. .|.|++||-|++..... .+. .|+++.|+...
T Consensus 524 Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~ 564 (788)
T PLN02859 524 TLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHI 564 (788)
T ss_pred hHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhC
Confidence 7777765 69999999999996433 344 69999995544
No 96
>KOG1149|consensus
Probab=99.54 E-value=3.9e-14 Score=140.33 Aligned_cols=246 Identities=19% Similarity=0.186 Sum_probs=161.4
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|.+|||-+|+++.-.++||- +.-.|+..+.|-|.+ .++..-.+.+.++|+++||.+|
T Consensus 39 APSPTGfLHlGgLRTALfNYLfArk-----~gGkFiLRiEDTDq~-------------R~v~gs~e~i~~~L~w~nl~~D 100 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFARK-----KGGKFILRIEDTDQK-------------RLIRGSEEAIYEDLKWANLDWD 100 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHHh-----cCCeEEEEecccccc-------------ccccchHHHHHHHHHhcCCCcc
Confidence 4999999999999999766666665 888999999999954 3444556779999999999999
Q ss_pred Ccc--------ccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------cCcC----cccCC
Q psy14486 111 DYQ--------PCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------LNYG----KLSGR 164 (472)
Q Consensus 111 ~~~--------~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~~yg----~l~~~ 164 (472)
.-. .++|+..+.+.+..++|++.|.||+ |||+..- |.|. .|+..
T Consensus 101 EgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr----------CFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ 170 (524)
T KOG1149|consen 101 EGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR----------CFCSEERLDLLRKSALKKHEIPRYDRKCANLSDA 170 (524)
T ss_pred cCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE----------eccCHHHHHHHHHhhhccCCCCcccchhcccCHH
Confidence 862 2456788899999999999999996 8887531 3333 34433
Q ss_pred Cccccc-cC---CCCccccccCc--cccc----ccccc-CCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEee
Q psy14486 165 LISSNF-NK---INEKNNFKKDP--LDFA----LWKVS-KNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHG 233 (472)
Q Consensus 165 ~~~~~~-~g---~v~~~~~k~~~--~df~----lwk~~-~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~ 233 (472)
++.... .| .+...-.++++ .|.+ .|+.. ..|+|-+++ ..|.|.+|+.| .+|-|.
T Consensus 171 ei~~~lakg~pf~iRFrl~~~~~~f~DLvyG~v~~~~d~~~gD~VvmK-----SDgfPTYHfAn----------VVDDh~ 235 (524)
T KOG1149|consen 171 EIKQKLAKGTPFTIRFRLPKESPPFTDLVYGKVNHNVDSNEGDPVVMK-----SDGFPTYHFAN----------VVDDHL 235 (524)
T ss_pred HHHHHHhcCCCeeEEEecCCCCCChhhhhhhhhhccccccCCCcEEEe-----cCCCcceeeee----------eecchh
Confidence 333222 23 11111112121 0111 12211 133332221 35778888776 567777
Q ss_pred eccCCcCc------hhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHh-hCChhhHHHHhhhc--
Q psy14486 234 GGQDLKFP------HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRS-- 304 (472)
Q Consensus 234 ~G~Dl~fp------H~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~-- 304 (472)
+|+-|+.- -+.-.+....| +|.++|++....-.++.+|.|.||+.|. +.+..+.+ .|=|+++=-|++..
T Consensus 236 M~IsHViRGeEWlpST~KH~lLYkA-fgW~pPkFaHlpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gw 313 (524)
T KOG1149|consen 236 MGISHVIRGEEWLPSTLKHILLYKA-FGWQPPKFAHLPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGW 313 (524)
T ss_pred cchhheeecchhccccHHHHHHHHH-hCCCCCceeeeeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCC
Confidence 77766543 23333444455 4788888744445556799999999999 57777775 58899988888774
Q ss_pred -CCCCCcccCHHHHHHHH
Q psy14486 305 -HYRSTINYSEIYLNYAK 321 (472)
Q Consensus 305 -~~~~~~~fs~~~l~~~~ 321 (472)
..+..--||.+.|.+.-
T Consensus 314 g~~~~~~f~sl~eLieqF 331 (524)
T KOG1149|consen 314 GFRTENEFFSLEELIEQF 331 (524)
T ss_pred CcccccccccHHHHHHHh
Confidence 34445667888876543
No 97
>KOG4426|consensus
Probab=99.54 E-value=3.4e-12 Score=126.39 Aligned_cols=330 Identities=19% Similarity=0.175 Sum_probs=215.0
Q ss_pred CCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHH---H-------------------
Q psy14486 20 ITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKI---I------------------- 77 (472)
Q Consensus 20 ~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki---~------------------- 77 (472)
...++|.+-.++|+....+|+||+|+.|++|.++|.+++.|++|..++.+.|+|.+. |
T Consensus 185 l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgD 264 (656)
T KOG4426|consen 185 LSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGD 264 (656)
T ss_pred cceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchh
Confidence 345788889999999999999999999999999999999999999999999997541 1
Q ss_pred -------------------HHHHHc-----CC------CHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHH
Q psy14486 78 -------------------ACAKKN-----NE------SIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMI 127 (472)
Q Consensus 78 -------------------~~a~~~-----g~------~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i 127 (472)
++|.+. |. -|.-+++-..++|...+++|.|+.... ..|.|.+.|.+++
T Consensus 265 LQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~--GESFYq~~m~~vv 342 (656)
T KOG4426|consen 265 LQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKER--GESFYQDRMAEVV 342 (656)
T ss_pred HHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhc--chhhhhhHHHHHH
Confidence 122221 11 167788899999999999999988654 6788999999999
Q ss_pred HHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCccccccccccCCCCCccccccCCCc
Q psy14486 128 EKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWG 207 (472)
Q Consensus 128 ~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG 207 (472)
+.|..+|++.+.+ ...+.|... |+ ..+.-+ |.+ ..|. +++
T Consensus 343 eel~~kglvee~~----Gr~i~f~~g----~~----IPLtvV----------KSD-GGft--------------Ydt--- 382 (656)
T KOG4426|consen 343 EELKSKGLVEEDD----GRRIMFPEG----CD----IPLTVV----------KSD-GGFT--------------YDT--- 382 (656)
T ss_pred HHHhcCCceeecC----CceEeccCC----CC----cceEEE----------ecC-CCcc--------------ccc---
Confidence 9999999999874 234555332 11 111100 000 0111 000
Q ss_pred cCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHH---HHHhhccCCCCceEEEeeee--EE-ecCccccccCCC
Q psy14486 208 AGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEI---AQSEGAYKHKFVNYWMHSGF--VK-INNKKMSKSFGN 281 (472)
Q Consensus 208 ~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~---a~~~a~~g~~~~~~~~h~g~--l~-~~G~KMSKS~Gn 281 (472)
-..+|+..+.+....|....=.|.--..|.+.+ |+-.+......++. -|-|| |+ -+|+|+-++.|.
T Consensus 383 -------sDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~gwld~~~~RV-~HvgFGlVLGeD~KkFkTRsge 454 (656)
T KOG4426|consen 383 -------SDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKAGWLDPTYPRV-EHVGFGLVLGEDKKKFKTRSGE 454 (656)
T ss_pred -------chHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHcCccCCCccce-eeeeeeeEEccCcccccccccc
Confidence 001222222222112211112222222333433 23222223334443 55555 44 378899999999
Q ss_pred ccCHHHHHhh-----------------C------------ChhhHHHHhhhcCCCCCcccCHHHHHHHH--------HHH
Q psy14486 282 FCTIRDLLKK-----------------Y------------NPEVIRFFILRSHYRSTINYSEIYLNYAK--------KSL 324 (472)
Q Consensus 282 ~i~~~dll~~-----------------~------------~~d~lR~~ll~~~~~~~~~fs~~~l~~~~--------~~~ 324 (472)
+|-+.|||++ . +-..+.|.-|++..-++..||.+.|.+-+ .++
T Consensus 455 tVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~ 534 (656)
T KOG4426|consen 455 TVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAY 534 (656)
T ss_pred eeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHH
Confidence 9999999962 2 22347888888877788899999886533 258
Q ss_pred HHHHHHHHhcCccc----------cccccCcc---------hhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH---
Q psy14486 325 IRLYLAIKDIPKIN----------YKKIIDLN---------EPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS--- 382 (472)
Q Consensus 325 ~r~~~~~~~~~~~~----------~~~~~~~~---------~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~--- 382 (472)
.||++++++..... +.-..|.+ -.+.+-+.+++ +++-.+..+.++++++..+..|++
T Consensus 535 tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~-~~L~lh~lC~y~y~l~t~Ft~FY~~Cy 613 (656)
T KOG4426|consen 535 TRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKAL-DSLFLHVLCDYLYELATLFTEFYDSCY 613 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccE
Confidence 89999988764321 10001211 24566777777 899999999999999999999886
Q ss_pred ---------------------HHHHHHHHHHHhhhcccc
Q psy14486 383 ---------------------IKMAKQLRGLGNWLGLLE 400 (472)
Q Consensus 383 ---------------------~~~~~~l~~~~~ilGi~~ 400 (472)
...+..++..+.+|||..
T Consensus 614 v~e~~~eg~i~~vn~sRllLCeata~VmrkcF~iLGi~p 652 (656)
T KOG4426|consen 614 VIEKNKEGEIPFVNMSRLLLCEATAAVMRKCFHILGIKP 652 (656)
T ss_pred EeccccccccccchhHHHHHHHHHHHHHHHhhHhhCCcc
Confidence 122345667788888854
No 98
>KOG0437|consensus
Probab=99.44 E-value=3.4e-13 Score=140.77 Aligned_cols=138 Identities=22% Similarity=0.260 Sum_probs=98.2
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhcc-CCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-C
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAY-KHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-H 305 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~-g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~ 305 (472)
|+|+.+.|+||+--|..+.+--.-|+. .+.||+-+-.|||++++++|||||.|||.|+++.++++|+|+.|+.|+-+ .
T Consensus 663 PiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD 742 (1080)
T KOG0437|consen 663 PIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGD 742 (1080)
T ss_pred ceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeecccC
Confidence 789999999999777665554444444 36799999999999999999999999999999999999999999999987 6
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHhcCcc---------ccccc-cCc-----chhHHHHHHHHHHhccChhHHHHH
Q psy14486 306 YRSTINYSEIYLNYAKKSLIRLYLAIKDIPKI---------NYKKI-IDL-----NEPHAKRFIIAMNDDFNTPVAISI 369 (472)
Q Consensus 306 ~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~~---------~~~~~-~~~-----~~~~~~~~~~al~dd~n~~~al~~ 369 (472)
--.+.||.+....+ ++-|+++.+.-+... .+... .|. .+.....-.+++ .+.++..|+..
T Consensus 743 ~veDANF~ea~AnA---aILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~ay-e~~~fk~aLK~ 817 (1080)
T KOG0437|consen 743 GVEDANFVEANANA---AILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAY-EDTLFKDALKY 817 (1080)
T ss_pred CcccchhHHhcccH---HHHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHh
Confidence 67788998665444 445555444333210 11110 011 134455555666 56677777763
No 99
>KOG1195|consensus
Probab=99.41 E-value=3.3e-11 Score=122.04 Aligned_cols=323 Identities=13% Similarity=0.096 Sum_probs=206.3
Q ss_pred CCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHH------------------------
Q psy14486 22 PGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKII------------------------ 77 (472)
Q Consensus 22 ~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~------------------------ 77 (472)
.+++.+-.++|+...+.|+||.|+.+++-.++...+..|++|+-+.+..|+|..+-
T Consensus 109 ~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~ 188 (567)
T KOG1195|consen 109 GKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLF 188 (567)
T ss_pred CceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHH
Confidence 56888999999999999999999999999999999999999999999999863321
Q ss_pred ------HHHHHc----------------CC------CHHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcHHHHHHHHH
Q psy14486 78 ------ACAKKN----------------NE------SIKTLTSRFIKAAQEDSLLLHIQPPDYQPCAT-NYIPQILKMIE 128 (472)
Q Consensus 78 ------~~a~~~----------------g~------~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s-~~~~~~~~~i~ 128 (472)
++..+. +. -|+.+-+--++.+.+.+++|||.+|.+ +..| .+.+.++...+
T Consensus 189 dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y-~gESqv~~e~~~~~~d 267 (567)
T KOG1195|consen 189 DVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEY-SGESQVSNEKMQEALD 267 (567)
T ss_pred HHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeec-cchHHHHHHHHHHHHH
Confidence 111111 11 155677777888899999999999988 5666 56678888888
Q ss_pred HHHHCCCccccCCCccCCcEEEecccccCcC---cccCCCccccccCCCCccccccCccccccccccCCCCCccccccCC
Q psy14486 129 KLIFNGLAYQNNNGKINGDVNYSVRNFLNYG---KLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSK 205 (472)
Q Consensus 129 ~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg---~l~~~~~~~~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~ 205 (472)
.+..+|+.-+. +|..++++++...-+ -+-+.+...+.. -+ |
T Consensus 268 ~~rs~~l~~e~-----dG~~vidL~~~~~~~~~~~V~ksdgttLYl--------tR---d-------------------- 311 (567)
T KOG1195|consen 268 LLRSANLTEEI-----DGTIVIDLSKIDKKAGKAVVQKSDGTTLYL--------TR---D-------------------- 311 (567)
T ss_pred HHHhcCCcccC-----CCcEEEEecccCcccceEEEEcCCCceehH--------HH---H--------------------
Confidence 88888866655 799999988643211 010000000000 00 0
Q ss_pred CccCCCCCcchhhHhhhhhhCCCce--Eeee--ccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEec-CccccccCC
Q psy14486 206 WGAGRPGWHIECSAMSCYLLGSHFD--IHGG--GQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKIN-NKKMSKSFG 280 (472)
Q Consensus 206 wG~g~PgWhiecsam~~~~~g~~~d--ih~~--G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~-G~KMSKS~G 280 (472)
.+|...++-...+| |.+. |.|. |.....-+.+++ |..|+.-. +||.+. +.-||+++|
T Consensus 312 -----------iaaal~Rl~~y~fdr~iYVvd~~Q~~---hf~~lf~ilk~m-g~~~a~~~---qHV~~G~v~GmsTRkG 373 (567)
T KOG1195|consen 312 -----------IAAALDRLEKYSFDRLIYVVDSQQKD---HFCQLFEILKKM-GFDWAKKL---QHVNFGRVQGMSTRKG 373 (567)
T ss_pred -----------HHHHHHHHHhcCcceEEEEechHHHH---HHHHHHHHHHHh-Cchhhhhc---ceecccccccccccCC
Confidence 01111110000111 1111 2221 222222233343 44443322 334432 356999999
Q ss_pred CccCHHHHHhh----------------------------CChhhHHHHhhhcCCCCCcccCHHHHHHHH--------HHH
Q psy14486 281 NFCTIRDLLKK----------------------------YNPEVIRFFILRSHYRSTINYSEIYLNYAK--------KSL 324 (472)
Q Consensus 281 n~i~~~dll~~----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~--------~~~ 324 (472)
+++.++|++++ .+..++..-.+...-.+...|+|+.+-... -+.
T Consensus 374 ~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~H 453 (567)
T KOG1195|consen 374 KVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTH 453 (567)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHH
Confidence 99999999873 456667776666666778889998876543 246
Q ss_pred HHHHHHHHhcCccccc----cc---c-Cc--------chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH------
Q psy14486 325 IRLYLAIKDIPKINYK----KI---I-DL--------NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS------ 382 (472)
Q Consensus 325 ~r~~~~~~~~~~~~~~----~~---~-~~--------~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~------ 382 (472)
.|+.+..++....... .+ . +. ...+.+.+..+| +++++...+.+|+.++..+++++.
T Consensus 454 sRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~-e~lE~~~lV~YL~~La~a~s~~yk~l~V~d 532 (567)
T KOG1195|consen 454 SRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSM-EQLEPCTLVTYLFKLAHAVSSAYKILWVKD 532 (567)
T ss_pred HHHHHHHHhccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHH-HhhcchhHHHHHHHHHHHHHhHHhheeecC
Confidence 7887777776532110 00 0 00 135677888888 899999999999999999998765
Q ss_pred -------------HHHHHHHHHHHhhhcccc
Q psy14486 383 -------------IKMAKQLRGLGNWLGLLE 400 (472)
Q Consensus 383 -------------~~~~~~l~~~~~ilGi~~ 400 (472)
.++...|...+.+|||..
T Consensus 533 ~~~eia~aRL~Lf~AvRqVL~ngm~lLGitP 563 (567)
T KOG1195|consen 533 SPMEIALARLLLFSAVRQVLNNGMRLLGITP 563 (567)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHhCCCc
Confidence 123356666677888753
No 100
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=98.82 E-value=1e-08 Score=77.52 Aligned_cols=55 Identities=45% Similarity=0.681 Sum_probs=42.7
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhcccccchhHH
Q psy14486 352 RFIIAMNDDFNTPVAISILFDLANIINKNKS-------IKMAKQLRGLGNWLGLLEYSSDEF 406 (472)
Q Consensus 352 ~~~~al~dd~n~~~al~~l~~l~~~~N~~~~-------~~~~~~l~~~~~ilGi~~~~~~~~ 406 (472)
+|.+||+||||||.|++.|+++++.+|+... ..+...++.+..||||+..++.++
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~vLGl~~~~~~~~ 62 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINRALESNDKEDLEALAAALRKLLDVLGLLQEDPEEW 62 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHCCT-S-S-HHHH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCcCCCCCHHHh
Confidence 5899999999999999999999999999432 345678888999999987766543
No 101
>KOG1147|consensus
Probab=98.53 E-value=3.2e-07 Score=93.86 Aligned_cols=98 Identities=26% Similarity=0.378 Sum_probs=81.4
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDS 102 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 102 (472)
|+|.+ --+|-|+|+||||||+.+++---++-. |+-..++.+||-. |..=.++|.+.+++|+
T Consensus 199 GkVv~-RFPPEpSGyLHIGHAKAALLNqYfa~~-----~~G~LIvRFDDTN-------------PaKE~~eFe~~IleDl 259 (712)
T KOG1147|consen 199 GKVVT-RFPPEPSGYLHIGHAKAALLNQYFAQA-----YQGKLIVRFDDTN-------------PAKENEEFEDVILEDL 259 (712)
T ss_pred CceEE-ecCCCCCceeehhhHHHHHHHHHHHHh-----cCceEEEEecCCC-------------cchhhHHHHHHHHHHH
Confidence 34433 346999999999999998765555444 7788999999987 3444568999999999
Q ss_pred HHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccC
Q psy14486 103 LLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNN 140 (472)
Q Consensus 103 ~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~ 140 (472)
..|||.+|.+ +.+|+|.+.+..+..+|+..|.||...
T Consensus 260 ~~LgIkpd~~-TyTSDyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 260 SLLGIKPDRV-TYTSDYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred HHhCcCccee-eechhhHHHHHHHHHHHHhcCcccccC
Confidence 9999999987 789999999999999999999999864
No 102
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=98.34 E-value=1.8e-06 Score=68.56 Aligned_cols=78 Identities=24% Similarity=0.196 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHHHHHHHhccChhHHHHHHHHHHHHH-HHHHH--HHHHHHHH
Q psy14486 314 EIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANII-NKNKS--IKMAKQLR 390 (472)
Q Consensus 314 ~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~-N~~~~--~~~~~~l~ 390 (472)
++.|+++.+.++||++++.++.. + . ...+.++|.++|+||||||.|++.|+++++.+ |+.-. ......++
T Consensus 1 ~e~L~~A~~~l~rl~~~l~~~~~--~----~-~~~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i~~~~~~~~~~~~~~~~ 73 (81)
T cd07955 1 DEVLADAEARLARWRSAVALPDG--P----D-AEALVARLREALADDLDTPKALAALDAWAREALSRGGTDPDAPALVRT 73 (81)
T ss_pred ChHHHHHHHHHHHHHHHHHhccc--c----c-HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhcCCCCcccHHHHHH
Confidence 36789999999999999988631 1 1 13567899999999999999999999999988 75432 23344667
Q ss_pred HHHhhhcc
Q psy14486 391 GLGNWLGL 398 (472)
Q Consensus 391 ~~~~ilGi 398 (472)
.+..+||+
T Consensus 74 ~~~~~~~~ 81 (81)
T cd07955 74 AVDALLGV 81 (81)
T ss_pred HHHHHcCC
Confidence 77788885
No 103
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=98.20 E-value=2.7e-06 Score=62.48 Aligned_cols=47 Identities=53% Similarity=0.767 Sum_probs=36.9
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhcc
Q psy14486 352 RFIIAMNDDFNTPVAISILFDLANIINKNKS--------IKMAKQLRGLGNWLGL 398 (472)
Q Consensus 352 ~~~~al~dd~n~~~al~~l~~l~~~~N~~~~--------~~~~~~l~~~~~ilGi 398 (472)
+|.+||+||||||.|++.++++++.+|+++. ..+...+..+..+||+
T Consensus 1 ~f~~al~DD~NT~~Al~~l~~l~~~~N~~l~~~~~~~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 1 RFEEAMDDDFNTPEALAVLFELAREINRLLLKAVDAEELAALAALLRALGGVLGL 55 (56)
T ss_pred ChHHHhhcccCcHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhccCC
Confidence 3789999999999999999999999998763 1233445556667775
No 104
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.12 E-value=5.1e-06 Score=81.51 Aligned_cols=74 Identities=15% Similarity=0.041 Sum_probs=47.1
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhcC
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSH 305 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~ 305 (472)
..++..+|.|.. +|++.-.-...-.++.+.|...++ -+|. ++|.|||||.+|.+++..+. -+|+.++=.+.+..
T Consensus 153 ~~~~vp~G~DQ~-~~i~l~rdla~r~n~~~~p~~l~~-p~l~~l~G~KMSKS~~~~i~l~~~~--dsp~~i~~ki~~a~ 227 (273)
T cd00395 153 GCDIQPGGSDQW-GNITLGRELARRFNGFTIAEGLTI-PLVTKLDGPKFGKSESGPKWLDTEK--TSPYEFYQFWINAV 227 (273)
T ss_pred CCcEEEecHHHH-HHHHHHHHHHHHhCCCCCCeEEee-ccccCCCCCcCCCCCCCCccccccC--CCHHHHHHHHHccc
Confidence 458999999987 676654433333334444544444 4444 79999999999988754432 25656665555544
No 105
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=98.11 E-value=1.5e-05 Score=82.39 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=48.4
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeE-EecCccccccCCCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
..++..||.|.. +|++.-.-...-.++. .+ +-++.-.+ ..+|.|||||.||.|++.| +..+|..++=++++.
T Consensus 186 ~~~iq~gG~DQ~-~ni~~grdl~~r~~~~-~~-~~lt~PlL~g~dG~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (410)
T PRK13354 186 DVDLQIGGTDQW-GNILMGRDLQRKLEGE-EQ-FGLTMPLLEGADGTKMGKSAGGAIWLDP--EKTSPYEFYQFWMNI 258 (410)
T ss_pred CCCEEEecHHHH-HHHHHHHHHHHHhCCC-Cc-eEeccCCccCCCCCccCCCCCCceeccC--CCCCHHHHHHHHHcC
Confidence 678999999987 5555444333333322 23 32333334 4789999999999999987 456688887777764
No 106
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=98.09 E-value=7.1e-05 Score=75.36 Aligned_cols=77 Identities=27% Similarity=0.194 Sum_probs=47.8
Q ss_pred hhhhhhCCCceEeeeccCCcCchhHHHHHHHhhcc---C--CCCceEEEeeeeE----EecCccccccCCC-ccCHHHHH
Q psy14486 220 MSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAY---K--HKFVNYWMHSGFV----KINNKKMSKSFGN-FCTIRDLL 289 (472)
Q Consensus 220 m~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~---g--~~~~~~~~h~g~l----~~~G~KMSKS~Gn-~i~~~dll 289 (472)
|+...|-...|+.++|.|.. +|++.-.-+..-++ | .+.|.. +|+.++ -++|+|||||.+| .|.+.|
T Consensus 131 qaaDil~~~~d~vpvG~DQ~-~h~elaRdia~r~n~~~~~~f~~P~~-l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D-- 206 (328)
T TIGR00233 131 QAADILLYQADLVPVGIDQD-QHLELTRDLAERFNKKFKNFFPKPES-LISKFFPRLMGLSGKKMSKSDPNSAIFLTD-- 206 (328)
T ss_pred HHhhhhhcCCCeeecccccH-HHHHHHHHHHHHhhhhcCcccCCChh-hhccccCCCCCCCCCcCCCCCCCCeEeecC--
Confidence 33334434678999999997 78776554444433 2 344544 333342 2456899999997 887766
Q ss_pred hhCChhhHHHHhhh
Q psy14486 290 KKYNPEVIRFFILR 303 (472)
Q Consensus 290 ~~~~~d~lR~~ll~ 303 (472)
+|+.++==+.+
T Consensus 207 ---~~e~I~~KI~~ 217 (328)
T TIGR00233 207 ---TPKQIKKKIRK 217 (328)
T ss_pred ---CHHHHHHHHHh
Confidence 66666655555
No 107
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.06 E-value=3e-05 Score=79.00 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=46.2
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhc---cCCCCceEEEeeeeE-EecCccccccC-CCccCHHHHHhhCChhhHHHHhh
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGA---YKHKFVNYWMHSGFV-KINNKKMSKSF-GNFCTIRDLLKKYNPEVIRFFIL 302 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~---~g~~~~~~~~h~g~l-~~~G~KMSKS~-Gn~i~~~dll~~~~~d~lR~~ll 302 (472)
..++..+|.|.. ||++.-.-....+ +|.+.|.. +|+-++ .++|+|||||. +|.|.+.| +|+.++==+.
T Consensus 203 ~~~lvPvG~DQ~-~h~~ltRdiA~r~n~~~gf~~P~~-l~~~~lpgL~G~KMSkS~~~s~I~L~D-----~p~~I~kKI~ 275 (368)
T PRK12285 203 KPTLVPVGIDQD-PHIRLTRDIAERLHGGYGFIKPSS-TYHKFMPGLTGGKMSSSKPESAIYLTD-----DPETVKKKIM 275 (368)
T ss_pred CceEEEeccchH-HHHHHHHHHHHHHhhhcCCCCchh-HhhhcccCCCCCcCCCCCCCCeeeccC-----CHHHHHHHHH
Confidence 456889999997 7876644333333 25555554 344566 48999999998 67888766 6666665555
Q ss_pred hc
Q psy14486 303 RS 304 (472)
Q Consensus 303 ~~ 304 (472)
++
T Consensus 276 kA 277 (368)
T PRK12285 276 KA 277 (368)
T ss_pred hC
Confidence 43
No 108
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.93 E-value=8e-05 Score=73.42 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=45.2
Q ss_pred EEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Q psy14486 28 YVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHI 107 (472)
Q Consensus 28 y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI 107 (472)
..+|--|+|.+||||.-+++. ..+.|+..|+++.+. +.|.-..+- ...+++ -..++...+..++.++|+
T Consensus 2 i~tG~~PTG~lHLG~~~~al~---~~~~lQ~ag~~~~~~--IaD~ha~t~-----~~~~~~-~~~~~~~~~~~~~lA~G~ 70 (280)
T cd00806 2 VLSGIQPSGSLHLGHYLGAFR---FWVWLQEAGYELFFF--IADLHALTV-----KQLDPE-ELRQNTRENAKDYLACGL 70 (280)
T ss_pred EEEeeCCCchhhHHHHHHHHH---HHHHHHhCCCCEEEE--ecchHHHhC-----CCCCHH-HHHHHHHHHHHHHHHcCC
Confidence 457888999999999766432 334445558887665 333321110 012333 445677788889999999
Q ss_pred CCC
Q psy14486 108 QPP 110 (472)
Q Consensus 108 ~~d 110 (472)
.++
T Consensus 71 dp~ 73 (280)
T cd00806 71 DPE 73 (280)
T ss_pred Ccc
Confidence 874
No 109
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.90 E-value=6.1e-05 Score=78.05 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=49.3
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeE-EecCccccccCCCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
..++..||.|.. +|++.-.-...-.+..+ .+-++.-.| ..+|+|||||.||.|++.| +..+|..++=++.+.
T Consensus 188 ~~~i~~gG~DQ~-~ni~~grdla~r~~~~~--~~~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 260 (408)
T PRK05912 188 GCDLQLGGSDQW-GNILSGRDLQRRYGGKP--QFGLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMNI 260 (408)
T ss_pred CCCEEeccHHHH-HHHHHHHHHHHHhCCCC--eEEEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhcC
Confidence 678999999998 57664333323332222 232333344 3789999999999999987 567888888887764
No 110
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.90 E-value=7.7e-05 Score=75.25 Aligned_cols=69 Identities=28% Similarity=0.218 Sum_probs=44.9
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCc--cccccC-CCccCHHHHHhhCChhhHHHHhh
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNK--KMSKSF-GNFCTIRDLLKKYNPEVIRFFIL 302 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~--KMSKS~-Gn~i~~~dll~~~~~d~lR~~ll 302 (472)
...|+.++|.|.. +|.+.-.-....+ +...|...+| -+|. ++|. |||||. ||.|++.| +|+.+|==+.
T Consensus 167 ~~ad~vpvG~DQ~-~h~~l~Rdia~~~-n~~~p~~l~~-~~l~~L~g~~~KMSKS~p~~~I~L~D-----~~~~I~~KI~ 238 (329)
T PRK08560 167 LDVDIAVGGMDQR-KIHMLAREVLPKL-GYKKPVCIHT-PLLTGLDGGGIKMSKSKPGSAIFVHD-----SPEEIRRKIK 238 (329)
T ss_pred hCCCEEEechhHH-HHHHHHHHhhHhc-CCCCceEEEc-CccCCCCCCCCCCcCCCCCCeecccC-----CHHHHHHHHH
Confidence 3678999999997 6655443333333 3333433344 4554 7887 999999 99998876 5666655555
Q ss_pred h
Q psy14486 303 R 303 (472)
Q Consensus 303 ~ 303 (472)
+
T Consensus 239 k 239 (329)
T PRK08560 239 K 239 (329)
T ss_pred h
Confidence 4
No 111
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=8.9e-05 Score=73.23 Aligned_cols=192 Identities=17% Similarity=0.123 Sum_probs=100.9
Q ss_pred EEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCC-CceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy14486 26 SLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN-YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLL 104 (472)
Q Consensus 26 ~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G-~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 104 (472)
....+|-.|+|.+||||.-.++ ..++....+ +++.+.. .|+|- ---.+.++++-...+..+...++-+
T Consensus 6 ~~vlSG~~PSG~lHLGny~ga~----~~~v~~q~~~~~~f~~I-aDlha------~t~~~~~~~~~l~~~~~e~~a~~LA 74 (314)
T COG0180 6 FRVLSGIQPSGKLHLGNYLGAI----RNWVLLQEEYYECFFFI-ADLHA------ITVRQDPTEEDLRQATREVAADYLA 74 (314)
T ss_pred ceEEecCCCCCCcchhHhHHHH----HHHHHHhcccCceEEEE-ecHHH------hhcCCCChHHHHHHHHHHHHHHHHH
Confidence 4567899999999999966553 333333445 4665432 22221 1111223445566778888888999
Q ss_pred hCCCCCCc-cccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCc
Q psy14486 105 LHIQPPDY-QPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDP 183 (472)
Q Consensus 105 LgI~~d~~-~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~ 183 (472)
+||+++-. .-.+|+. +++.++.-.|- |....|.|.+.
T Consensus 75 ~GiDP~k~~if~QS~v-~e~~eLa~~l~----------------------~~~~~gel~r~------------------- 112 (314)
T COG0180 75 VGLDPEKSTIFLQSEV-PEHAELAWLLS----------------------CVTNFGELERM------------------- 112 (314)
T ss_pred hccCccccEEEEccCc-hHHHHHHHHHH----------------------ccCcHHHHHhh-------------------
Confidence 99988752 1233333 22333322221 11111222110
Q ss_pred ccccccccc--CCCCCccccccCCCc-cCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhcc---C--
Q psy14486 184 LDFALWKVS--KNNDPYEIRWNSKWG-AGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAY---K-- 255 (472)
Q Consensus 184 ~df~lwk~~--~~g~~~~~~w~~~wG-~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~---g-- 255 (472)
..+|.. +.++ ..+-| ..+| +-|+..+|=...++...|.|.. ||-+...-+...++ +
T Consensus 113 ---~~fKdk~~~~~~------~~~~Gl~~YP------vlqAADILl~~a~~VPVG~DQ~-qHleLtRDiA~rfn~~y~~~ 176 (314)
T COG0180 113 ---TQFKDKSAKKGE------SIPIGLLTYP------VLQAADILLYQATLVPVGEDQD-QHLELTRDIARRFNHLYGEV 176 (314)
T ss_pred ---cCcchhhhcccc------cccccchhcc------HHHHHHhhhccCCeeccCCCch-HHHHHHHHHHHHHHhhcCCc
Confidence 001110 0000 00111 1122 3455555544567888899998 99877544433332 2
Q ss_pred CCCceEEEeee--eEE-ecC-ccccccCCC-ccCHHH
Q psy14486 256 HKFVNYWMHSG--FVK-INN-KKMSKSFGN-FCTIRD 287 (472)
Q Consensus 256 ~~~~~~~~h~g--~l~-~~G-~KMSKS~Gn-~i~~~d 287 (472)
.+.|...++ . ++. ++| +|||||.+| +|.+.|
T Consensus 177 f~~P~~~~~-~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 177 FPLPEALIS-KVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred cCCcccccc-CCCcccCCCCCCcccccCCCCeeeccC
Confidence 455554343 4 554 788 899999999 776644
No 112
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=97.88 E-value=0.001 Score=67.03 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=47.8
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~Lg 106 (472)
...+|--|+|.+||||.-+++ .-.+.|...|. + ++.=.|+| . +.. ...++.++. ++..+...++.++|
T Consensus 4 ~v~sG~~PTG~~HLGn~l~~~---~~~~~lQ~~~~-~-~i~IaD~h-a-~~~----~~~~~~~i~-~~~~~~~~~~lA~G 71 (333)
T PRK12282 4 IILTGDRPTGKLHLGHYVGSL---KNRVALQNEHE-Q-FVLIADQQ-A-LTD----NAKNPEKIR-RNILEVALDYLAVG 71 (333)
T ss_pred EEEEeeCCCCcchHHHHHHHH---HHHHHHHhCCC-E-EEEEccch-h-HhC----CCCCHHHHH-HHHHHHHHHHHHhC
Confidence 567788888999999965543 23335555664 4 33334444 2 221 123455444 56667888888999
Q ss_pred CCCCCc-cccCCCc
Q psy14486 107 IQPPDY-QPCATNY 119 (472)
Q Consensus 107 I~~d~~-~~r~s~~ 119 (472)
+.++-. +-..|+.
T Consensus 72 ~dp~k~~i~~qS~~ 85 (333)
T PRK12282 72 IDPAKSTIFIQSQI 85 (333)
T ss_pred cChhHeEEEECCcc
Confidence 988632 2345544
No 113
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.83 E-value=0.0017 Score=66.99 Aligned_cols=81 Identities=17% Similarity=0.084 Sum_probs=46.3
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~Lg 106 (472)
...+|-.|+|.+||||.-.++-- ..+.+...|++++|.. -|+-.-+ ...++.++. .+..++..++-+.|
T Consensus 4 rvlSGiqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~I--ADlHAlT------~~~dp~~lr-~~~~e~aa~~LA~G 72 (431)
T PRK12284 4 RVLTGITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFL--ADYHALI------KCDDPARIQ-RSTLEIAATWLAAG 72 (431)
T ss_pred EEEEEecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEe--echhhcc------CCCCHHHHH-HHHHHHHHHHHHhC
Confidence 36789999999999995554321 1223333588876542 2221111 012344444 33455788888999
Q ss_pred CCCCCc-cccCCC
Q psy14486 107 IQPPDY-QPCATN 118 (472)
Q Consensus 107 I~~d~~-~~r~s~ 118 (472)
+.++-. +-.+|+
T Consensus 73 lDPek~~if~QSd 85 (431)
T PRK12284 73 LDPERVTFYRQSD 85 (431)
T ss_pred CCccceEEEECCc
Confidence 998742 235554
No 114
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.78 E-value=0.00018 Score=73.71 Aligned_cols=90 Identities=10% Similarity=-0.003 Sum_probs=51.0
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
+.....+|--|+|.+|||| .++..--+.. |...|++|.+... |+-.-+- .+.|.++.++ ......+...+.
T Consensus 65 ~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~-lq~~G~~v~~~Ia--D~hA~~~---~~~g~~l~~i-~~~~~~~~~~~~ 135 (383)
T PTZ00126 65 ERPICYDGFEPSGRMHIAQ--GILKAINVNK-LTKAGCVFVFWVA--DWFALLN---NKMGGDLEKI-RKVGEYFIEVWK 135 (383)
T ss_pred CCCEEEEEECCCCcccccc--hHhHhHHHHH-HHhCCCeEEEEEc--cceeecC---CCCCCCHHHH-HHHHHHHHHHHH
Confidence 3345667899999999999 2222222333 4566999876532 1111000 0123334444 456666778899
Q ss_pred HhCCCCCCc-cccCCCcHHH
Q psy14486 104 LLHIQPPDY-QPCATNYIPQ 122 (472)
Q Consensus 104 ~LgI~~d~~-~~r~s~~~~~ 122 (472)
++|+.++-. +...|+++++
T Consensus 136 A~GlDp~k~~i~~qS~~v~~ 155 (383)
T PTZ00126 136 AAGMDMDNVRFLWASEEINK 155 (383)
T ss_pred HhCCCccceEEEECChhhhh
Confidence 999988632 3456665543
No 115
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=97.75 E-value=0.00033 Score=62.87 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=68.5
Q ss_pred hCChhhHHHHhhhcCCCCCcccCHHHHHHHH--------HHHHHHHHHHHhcCc-cc--cccc---c-C-cc-------h
Q psy14486 291 KYNPEVIRFFILRSHYRSTINYSEIYLNYAK--------KSLIRLYLAIKDIPK-IN--YKKI---I-D-LN-------E 347 (472)
Q Consensus 291 ~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~--------~~~~r~~~~~~~~~~-~~--~~~~---~-~-~~-------~ 347 (472)
..+.+++||.+|+....++++|+++.+.... .++.|+.+.+++... .. ...+ . + .+ .
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 4578999999999999999999999976553 368999999988652 11 0111 0 1 11 2
Q ss_pred hHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 348 PHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 348 ~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.+.+.+.+++ .+.+++.++..+.+++..+|+|++
T Consensus 82 ~~~~~i~~~~-~~~~~~~l~~~l~~L~~~~~~ffd 115 (156)
T cd07956 82 KFPEVVKNAA-ETLEPHTIATYLFDLAHAFSKFYN 115 (156)
T ss_pred HhHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHHHh
Confidence 4455567777 688999999999999999999986
No 116
>PLN02486 aminoacyl-tRNA ligase
Probab=97.68 E-value=0.00042 Score=70.94 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCceEEEEcCCCCCC-cCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy14486 22 PGKVSLYVCGITAYD-YCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQE 100 (472)
Q Consensus 22 ~~~v~~y~cgPt~~g-~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 100 (472)
.|+.-...||=-|+| .+|||| +|.+..++.+.+..|..+... ++|- ...+.+ +.+.+++ .++..+..+
T Consensus 70 ~~~~~~vYtG~~PSg~~lHlGH---lv~~~~~~~lQ~~~~~~~~I~--iaD~----e~~~~~-~~~~e~i-~~~~~en~~ 138 (383)
T PLN02486 70 KGEKFYLYTGRGPSSEALHLGH---LIPFMFTKYLQDAFKVPLVIQ--LTDD----EKFLWK-NLSVEES-QRLARENAK 138 (383)
T ss_pred cCCCeEEEeCCCCCCccccHHH---HHHHHHHHHHHHhCCCeEEEE--ecCH----HHHhhc-CCCHHHH-HHHHHHHHH
Confidence 344456678899998 599999 455555664444556655554 4432 222333 4666554 466677888
Q ss_pred HHHHhCCCCC
Q psy14486 101 DSLLLHIQPP 110 (472)
Q Consensus 101 ~l~~LgI~~d 110 (472)
++.++|+.++
T Consensus 139 ~iiA~G~dp~ 148 (383)
T PLN02486 139 DIIACGFDVE 148 (383)
T ss_pred HHHHhCCCCc
Confidence 8888999875
No 117
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.67 E-value=0.00016 Score=70.91 Aligned_cols=70 Identities=21% Similarity=0.129 Sum_probs=44.9
Q ss_pred ceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 229 FDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 229 ~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
.++..+|.|.. +|++.-.-...-. +...+ +.+++-+|. ++|+|||||.+|.+| ..+ .=+|+.++=.+.+.
T Consensus 152 ~~l~~~G~DQ~-~~i~~~rd~a~r~-~~~~~-~~l~~~ll~~l~G~KMSKS~~~~~~-i~l--~dsp~~i~~Ki~~a 222 (269)
T cd00805 152 VDLQLGGSDQR-GNITLGRDLIRKL-GYKKV-VGLTTPLLTGLDGGKMSKSEGNAIW-DPV--LDSPYDVYQKIRNA 222 (269)
T ss_pred CCeeEecHHHH-HHHHHHHHHHHHh-CCCCc-EEEeeccccCCCCCcccCCCCCccc-ccC--CCCHHHHHHHHHcC
Confidence 48999999998 7766544333333 33323 335556664 899999999999885 222 23666666665554
No 118
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=97.56 E-value=4e-05 Score=76.10 Aligned_cols=69 Identities=28% Similarity=0.231 Sum_probs=42.0
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCC---CCceEEEeeeeEE-ecCc-cccccCCC-ccCHHHHHhhCChhhHHHHh
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKH---KFVNYWMHSGFVK-INNK-KMSKSFGN-FCTIRDLLKKYNPEVIRFFI 301 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~---~~~~~~~h~g~l~-~~G~-KMSKS~Gn-~i~~~dll~~~~~d~lR~~l 301 (472)
..++.++|.|.. +|.+.-.-.....+.. +.|.. +++-++. ++|. |||||.+| .|++.| +++.+|-.+
T Consensus 149 ~~~~~~~G~DQ~-~~~~l~rd~a~k~~~~~~~~~p~~-l~~~~l~~l~G~~KMSKS~~ns~I~L~d-----~~~~i~~Ki 221 (292)
T PF00579_consen 149 KADLVPGGIDQR-GHIELARDLARKFNYKEIFPKPAG-LTSPLLPGLDGQKKMSKSDPNSAIFLDD-----SPEEIRKKI 221 (292)
T ss_dssp THSEEEEEGGGH-HHHHHHHHHHHHHTHHSTSSS-EE-EEETCBBSTTSSSBTTTTTTGGS-BTTT-----THHHHHHHH
T ss_pred ccccccccchHH-HHHHHHHHHHhhhcccccccCchh-eeeccccccCCccccCccCCccEEEEec-----cchhHHHHH
Confidence 567999999987 5554433332222222 34544 4445555 7888 99999999 888876 455555544
Q ss_pred hh
Q psy14486 302 LR 303 (472)
Q Consensus 302 l~ 303 (472)
..
T Consensus 222 ~~ 223 (292)
T PF00579_consen 222 KK 223 (292)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 119
>KOG1148|consensus
Probab=97.45 E-value=0.00021 Score=74.46 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=65.5
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
+|-|+|.||||||-..-+-==++++ +.| |.|. ..||-. |+.=.++|.+.|.+..++||..+-
T Consensus 254 PPEPNG~LHIGHaKAInvNFgyAk~--~~G--~cyL-RfDDTN-------------PEkEee~yf~sI~e~V~WLG~~P~ 315 (764)
T KOG1148|consen 254 PPEPNGILHIGHAKAINVNFGYAKA--HGG--VCYL-RFDDTN-------------PEKEEEEYFESIKEMVAWLGFEPY 315 (764)
T ss_pred CCCCCceeeecchhheeechhhhhh--hCC--eEEE-ecCCCC-------------cchhhHHHHHHHHHHHHHhCCCce
Confidence 6999999999998754322223333 112 2333 345554 444556999999999999999874
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccc
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQ 138 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~ 138 (472)
-+ +..|+|.+++-++-..|+.+|+||.
T Consensus 316 kv-TysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 316 KV-TYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred ee-ecchhHHHHHHHHHHHHHhcCceeE
Confidence 43 7788999999999999999999996
No 120
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00017 Score=73.87 Aligned_cols=54 Identities=20% Similarity=0.107 Sum_probs=36.3
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCCccC
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCT 284 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~ 284 (472)
..|+.+||.|..+-|..-.--+ ..+ |.+ +.+-+|.-.|+ .+|.|||||.||.++
T Consensus 180 ~~dlq~GG~DQ~~ni~~grdl~-rr~-g~~-~~~~lt~PLL~~ldG~KmgKs~~~a~~ 234 (401)
T COG0162 180 NKDLQLGGSDQWGNILAGRDLI-RRL-GQK-KVVGLTTPLLTGLDGKKMGKSEGGAVW 234 (401)
T ss_pred ccchhcCChHHHHHHHHHHHHH-HHh-CCC-CeEEEEeccccCCCCCcccccCCCceE
Confidence 4579999999887765443323 223 333 33556666665 899999999999544
No 121
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=97.35 E-value=0.00059 Score=74.45 Aligned_cols=86 Identities=8% Similarity=-0.030 Sum_probs=47.9
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~Lg 106 (472)
...+|--|+|.+||||. ++.=+-.+-+...|++|.+.. .|+-..+ -.+.|.+..++.. ....+.+++.++|
T Consensus 34 rv~sGi~PTG~lHLGng---~~~aik~~~~~q~g~~~~~lI--AD~HAlt---~~~~~~~l~~i~~-~~~~~~~~~lA~G 104 (682)
T PTZ00348 34 RCYDGFEPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFWV--ADWFALM---NDKVGGELEKIRI-VGRYLIEVWKAAG 104 (682)
T ss_pred EEEEeeCCCCcCeeccH---HHHHHHHHHHHhCCCeEEEEE--cchhhhc---CCCCCCCHHHHHH-HHHHHHHHHHHcC
Confidence 46788999999999992 222111222335699876652 2222111 1122334444432 2345677899999
Q ss_pred CCCCCc-cccCCCcHH
Q psy14486 107 IQPPDY-QPCATNYIP 121 (472)
Q Consensus 107 I~~d~~-~~r~s~~~~ 121 (472)
+.++-. +...|+.+.
T Consensus 105 lDpeK~~~~~qSd~i~ 120 (682)
T PTZ00348 105 MDMDKVLFLWSSEEIT 120 (682)
T ss_pred CCccceEEEECcHhhh
Confidence 998732 345666444
No 122
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.34 E-value=0.00079 Score=68.73 Aligned_cols=71 Identities=17% Similarity=0.367 Sum_probs=44.3
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHH-CCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRI-NNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLL 105 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~-~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 105 (472)
...+|--|+|.+||||.-.++ +.+.++ .|+++.+. +.|.-.-+.. ..++.++ ..+...+..++-++
T Consensus 4 ~v~sGiqPSG~~HLGnylG~i-----k~wv~lq~~~~~~~~--IADlHAlt~~-----~~d~~~i-r~~~~~~~a~~lA~ 70 (398)
T PRK12283 4 RVLSGMRPTGRLHLGHYHGVL-----KNWVKLQHEYECFFF--VADWHALTTH-----YETPEVI-EKNVWDMVIDWLAA 70 (398)
T ss_pred EEEEEeCCCCcchHHHHHHHH-----HHHHHHhcCCcEEEE--eecHHHHhCC-----CCCHHHH-HHHHHHHHHHHHHc
Confidence 467889999999999965543 455553 37776433 3333222110 1244443 35556789999999
Q ss_pred CCCCC
Q psy14486 106 HIQPP 110 (472)
Q Consensus 106 gI~~d 110 (472)
|+.++
T Consensus 71 GlDP~ 75 (398)
T PRK12283 71 GVDPA 75 (398)
T ss_pred CCCcc
Confidence 99886
No 123
>PLN02886 aminoacyl-tRNA ligase
Probab=97.31 E-value=0.0053 Score=62.80 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=43.8
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHHC-CCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRIN-NYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLL 105 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~-G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 105 (472)
..++|--|+|.+||||.-.++ ..+.+++ |+++.+. +.|.-.-+ ...++.++. .+...+..++-++
T Consensus 48 ~v~sGiqPSG~lHLGnylGai-----~~~v~lQ~~~~~~~~--IADlHAlt------~~~~~~~lr-~~~~~~~a~~lA~ 113 (389)
T PLN02886 48 RVVSGVQPTGSIHLGNYLGAI-----KNWVALQETYDTFFC--VVDLHAIT------LPHDPRELG-KATRSTAAIYLAC 113 (389)
T ss_pred eEEEEECCCCccHHHHHHHHH-----HHHHHHhccCCEEEE--EecHHHhh------CCCCHHHHH-HHHHHHHHHHHHc
Confidence 477899999999999955443 3333322 8887533 33333221 122455444 5556688899999
Q ss_pred CCCCC
Q psy14486 106 HIQPP 110 (472)
Q Consensus 106 gI~~d 110 (472)
|++++
T Consensus 114 GlDP~ 118 (389)
T PLN02886 114 GIDPS 118 (389)
T ss_pred CcCcc
Confidence 99986
No 124
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.94 E-value=0.0028 Score=65.08 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=27.1
Q ss_pred EEEEcCCCCCC-cCCcccchHHHHHHHHHHHHHHCCCceEEec
Q psy14486 26 SLYVCGITAYD-YCHLGHARLMIVFDIVQRWLRINNYDVTYVR 67 (472)
Q Consensus 26 ~~y~cgPt~~g-~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~ 67 (472)
....||--|+| .+||||+-+ .-.+++ +...|++|.++.
T Consensus 31 ~~vy~G~dPTg~~lHlGh~v~---l~~l~~-lq~~G~~~~ili 69 (377)
T TIGR00234 31 IKLYVGFDPTAPSLHLGHLVP---LLKLRD-FQQAGHEVIVLL 69 (377)
T ss_pred CEEEEeeCCCCCCccHHHHHH---HHHHHH-HHHCCCcEEEEE
Confidence 45678899998 999999543 334444 445799987765
No 125
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=96.67 E-value=0.014 Score=58.80 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=41.8
Q ss_pred hhhhhhCCCceEeeeccCCcCchhHHHHHHHhhcc---C--CCCceEEE--eeeeEE-ecCccccccCCCccCHHH
Q psy14486 220 MSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAY---K--HKFVNYWM--HSGFVK-INNKKMSKSFGNFCTIRD 287 (472)
Q Consensus 220 m~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~---g--~~~~~~~~--h~g~l~-~~G~KMSKS~Gn~i~~~d 287 (472)
|+...|-...|+.++|.|.. ||++.-.-...-++ | .+.|...+ |+-++. ++|+|||||.+|.|.+.|
T Consensus 141 qAADIl~~~~d~VpvG~DQ~-qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~D 215 (332)
T PRK12556 141 MAADILLFQATHVPVGKDQI-QHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLFA 215 (332)
T ss_pred HhhhhhhccCCEEEeccccH-HHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCcccccC
Confidence 33344433668999999998 88877443333322 2 34444432 334443 789999999999886543
No 126
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=96.47 E-value=0.015 Score=48.67 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhcC-ccccc----c--ccCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Q psy14486 312 YSEIYLNYAKKSLIRLYLAIKDIP-KINYK----K--IIDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINK 379 (472)
Q Consensus 312 fs~~~l~~~~~~~~r~~~~~~~~~-~~~~~----~--~~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~ 379 (472)
|+++.+....|.++|+++++.+.. +..+. . ..+. ...+..++.++| ++++++.|++.+++++..+|+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~n~ 79 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAALMELVNALYK 79 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH-hCCcchHHHHHHHHHHHHHHH
Confidence 578889999999999999987642 22211 0 0111 146778999999 899999999999999999999
Q ss_pred HHH
Q psy14486 380 NKS 382 (472)
Q Consensus 380 ~~~ 382 (472)
|++
T Consensus 80 ~~~ 82 (117)
T cd07958 80 YKK 82 (117)
T ss_pred hhc
Confidence 986
No 127
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=95.20 E-value=0.24 Score=41.42 Aligned_cols=70 Identities=19% Similarity=0.129 Sum_probs=53.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhc-Cccccccc---cCc-----chhHHHHHHHHHHhccChhHHHHHH-HHHHHHHHHHH
Q psy14486 312 YSEIYLNYAKKSLIRLYLAIKDI-PKINYKKI---IDL-----NEPHAKRFIIAMNDDFNTPVAISIL-FDLANIINKNK 381 (472)
Q Consensus 312 fs~~~l~~~~~~~~r~~~~~~~~-~~~~~~~~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l-~~l~~~~N~~~ 381 (472)
|+.+.+..+.+.++|+.+++.+. .+..+... .|. ...+..++.++| ++++++.|++.+ +++.+.+|+|+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~~~~~~~~~~~~Y~ 79 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETEGELEELTFIDRWLLSRLNRLIKETTEAY-ENMQFREALKEGLYELQNDLDWYR 79 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999998874 22122111 111 146788999999 899999999997 99999999987
Q ss_pred H
Q psy14486 382 S 382 (472)
Q Consensus 382 ~ 382 (472)
+
T Consensus 80 ~ 80 (117)
T cd07959 80 E 80 (117)
T ss_pred H
Confidence 6
No 128
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=95.16 E-value=0.12 Score=52.40 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=41.9
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~Lg 106 (472)
...+|--|+|.+||||.-..+. -+.+..+ +++|.++.. |.-.-+- ..++. -+..+...+..++-++|
T Consensus 3 ~v~~G~~PTG~lHLG~~~g~~~--~~~~lQ~--~~~~~~~Ia--D~ha~t~------~~~~~-~i~~~~~~~~~~~lA~G 69 (333)
T PRK00927 3 RVLSGIQPTGKLHLGNYLGAIK--NWVELQD--EYECFFCIA--DLHALTV------PQDPE-ELRENTRELAADYLACG 69 (333)
T ss_pred EEEEeeCCCccchHHhHHHHHH--HHHHHHh--cCCeEEEEe--cHHHHhC------CCCHH-HHHHHHHHHHHHHHeEc
Confidence 3567888899999999665532 1233332 377766542 2211110 11333 33456677888888999
Q ss_pred CCCC
Q psy14486 107 IQPP 110 (472)
Q Consensus 107 I~~d 110 (472)
+.++
T Consensus 70 lDp~ 73 (333)
T PRK00927 70 IDPE 73 (333)
T ss_pred cChh
Confidence 9876
No 129
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=93.46 E-value=0.27 Score=42.62 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=53.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhcCc----ccc-c---cc---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHH
Q psy14486 312 YSEIYLNYAKKSLIRLYLAIKDIPK----INY-K---KI---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLAN 375 (472)
Q Consensus 312 fs~~~l~~~~~~~~r~~~~~~~~~~----~~~-~---~~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~ 375 (472)
||++.+..+.+.+.|++++.+.+.. ..+ . .. .+. ...+..++.++| +.+++.+|++.+++++.
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~i~~~~~ 79 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATALYEFFW 79 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Confidence 6889999999999999999876521 111 0 10 011 146778899999 89999999999999997
Q ss_pred --HHHHHHH
Q psy14486 376 --IINKNKS 382 (472)
Q Consensus 376 --~~N~~~~ 382 (472)
.+|+|++
T Consensus 80 ~~~~N~Yi~ 88 (135)
T cd07962 80 NDFCDWYLE 88 (135)
T ss_pred HHHhHHHHH
Confidence 7999987
No 130
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=93.29 E-value=0.73 Score=38.79 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCccccc----cc-c--C-cc-------hhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH----
Q psy14486 322 KSLIRLYLAIKDIPKINYK----KI-I--D-LN-------EPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS---- 382 (472)
Q Consensus 322 ~~~~r~~~~~~~~~~~~~~----~~-~--~-~~-------~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~---- 382 (472)
.++.|+.+.+++....... .. . + .+ ..+...+.+++ .+++++.++..+.+|+..+|+|++
T Consensus 3 Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~-~~~~p~~l~~yL~~La~~f~~fy~~~~I 81 (119)
T PF05746_consen 3 YAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAA-KDLEPHKLCDYLYELAQAFNSFYDNVRI 81 (119)
T ss_dssp HHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHH-HHT-CHHHHHHHHHHHHHHHHHHHHS-S
T ss_pred HHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4678999999987543210 00 1 1 11 35677788888 899999999999999999999986
Q ss_pred ----------------HHHHHHHHHHHhhhcccc
Q psy14486 383 ----------------IKMAKQLRGLGNWLGLLE 400 (472)
Q Consensus 383 ----------------~~~~~~l~~~~~ilGi~~ 400 (472)
..+...+...+++|||..
T Consensus 82 ~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi~~ 115 (119)
T PF05746_consen 82 LDEDEEIRKNNRLALLKAVRQVLKNGLDLLGIEP 115 (119)
T ss_dssp TTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT---
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 112245666677777753
No 131
>KOG2007|consensus
Probab=92.47 E-value=0.22 Score=51.88 Aligned_cols=47 Identities=28% Similarity=0.421 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhcCChHHhHHHHHHhHhCCcEEEecCCCeeeEEE
Q psy14486 424 NDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471 (472)
Q Consensus 424 ~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~~Gi~v~D~~~g~t~w~~ 471 (472)
+++.+..+.|..++++|+++++|++|.+++..|+..+|.|.+ +.|+.
T Consensus 526 e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~a~~~i~p~-~~f~~ 572 (586)
T KOG2007|consen 526 EELLQEREEKTSAEKNKDKEKSDRIREELAAKGIALMKIPPE-EMFRP 572 (586)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhhcCChh-hhccc
Confidence 347778889999999999999999999999999999999998 88864
No 132
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=91.38 E-value=0.89 Score=38.49 Aligned_cols=67 Identities=16% Similarity=0.048 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc-Ccccccc----ccCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 315 IYLNYAKKSLIRLYLAIKDI-PKINYKK----IIDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 315 ~~l~~~~~~~~r~~~~~~~~-~~~~~~~----~~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
+......|.+.|+.+++.+. .+..+.. ..+. ...+..++.++| +++++++|++.++++++.+|+|++
T Consensus 4 ~l~~~~gnll~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~n~y~~ 80 (129)
T cd07957 4 ELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAM-EELEFRKALEEIMELARAANKYID 80 (129)
T ss_pred HHHhhHhhHHHHHHHHHHHHcCCcCCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhhhc
Confidence 44555667888888887654 2222211 1111 156788999999 899999999999999999999975
No 133
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=90.71 E-value=0.57 Score=38.68 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 347 EPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 347 ~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
..+..++.++| +++++..|++.+++++..+|+|++
T Consensus 49 ~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~y~~ 83 (117)
T cd07375 49 QEFIKRTTNAL-EALDPTTAVQELFKFTNELNWYLD 83 (117)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccHHHH
Confidence 46778999999 899999999999999999999975
No 134
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=85.51 E-value=4 Score=37.21 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=50.5
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHhcCc------cccc----c--c---cCc-----chhHHHHHHHHHHhccChhHHHHHH
Q psy14486 312 YSEIYLNYAKK-SLIRLYLAIKDIPK------INYK----K--I---IDL-----NEPHAKRFIIAMNDDFNTPVAISIL 370 (472)
Q Consensus 312 fs~~~l~~~~~-~~~r~~~~~~~~~~------~~~~----~--~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l 370 (472)
||++.++...+ .++|++++++.+.+ ..+. . . .|. ...+..++.++| +++++..|++.+
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~-e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEM-EAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 78899999888 99999998765411 1111 0 0 111 146788999999 899999999999
Q ss_pred HHHHHHH-HHHHH
Q psy14486 371 FDLANII-NKNKS 382 (472)
Q Consensus 371 ~~l~~~~-N~~~~ 382 (472)
++++... +.|++
T Consensus 80 ~~f~~~~~~~Y~e 92 (183)
T cd07961 80 LEFIDELTNWYIR 92 (183)
T ss_pred HHHHHHhhhhHhh
Confidence 9999865 55553
No 135
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=85.38 E-value=3 Score=37.33 Aligned_cols=70 Identities=27% Similarity=0.420 Sum_probs=47.7
Q ss_pred HHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHH
Q psy14486 52 VQRWLRINNYDVTYVRNITDIDDKIIACAKKNNES----IKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMI 127 (472)
Q Consensus 52 l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~----~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i 127 (472)
|+|+||..||++.|.. +.-|++|+.-|..+|.- -.++. ... ++|+.- ++.+.....+++.+++
T Consensus 18 LARwLRllGydt~~~~--~~~d~~i~~i~~~e~rIllTRDr~L~-------~r~--k~g~~~--i~i~~~s~~~Ql~e~~ 84 (165)
T COG1656 18 LARWLRLLGYDTVYSS--NESDDEIILIAKKEGRILLTRDRELY-------KRA--KLGIKA--ILIRSDSIEEQLAEFL 84 (165)
T ss_pred HHHHHHHcCCceeeec--cCCcHHHHHHHhcCCeEEEeccHHHH-------HHh--hccCce--EEEeCCCHHHHHHHHH
Confidence 8999999999999998 34456788888776632 11221 111 455543 3456667888999999
Q ss_pred HHHHHCC
Q psy14486 128 EKLIFNG 134 (472)
Q Consensus 128 ~~L~~~G 134 (472)
.++--++
T Consensus 85 ~~~~l~~ 91 (165)
T COG1656 85 ARLGLKP 91 (165)
T ss_pred HHhccch
Confidence 8886554
No 136
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=84.71 E-value=4.9 Score=36.56 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=51.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhcCc----ccccc-----c----cCc-----chhHHHHHHHHHHhccChhHHHHHHHHH
Q psy14486 312 YSEIYLNYAKKSLIRLYLAIKDIPK----INYKK-----I----IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDL 373 (472)
Q Consensus 312 fs~~~l~~~~~~~~r~~~~~~~~~~----~~~~~-----~----~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l 373 (472)
|+.+.+++..+.+++++|+++.+.+ ..+.. . .|. ...+..++.++| +++++..|++.++++
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~i~~f 79 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAY-ENYEFHKVYQALNNF 79 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 5778899999999999998765422 11110 0 011 146778899999 899999999999999
Q ss_pred HH--HHHHHHH
Q psy14486 374 AN--IINKNKS 382 (472)
Q Consensus 374 ~~--~~N~~~~ 382 (472)
+. .+|.|++
T Consensus 80 ~~~~l~n~Yi~ 90 (180)
T cd07960 80 CTVDLSAFYLD 90 (180)
T ss_pred HHHHHHHHHHH
Confidence 96 5688865
No 137
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=79.76 E-value=2.4 Score=37.55 Aligned_cols=66 Identities=24% Similarity=0.403 Sum_probs=41.7
Q ss_pred HHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHH
Q psy14486 52 VQRWLRINNYDVTYVRNITDIDDKIIACAKKNNES----IKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMI 127 (472)
Q Consensus 52 l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~----~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i 127 (472)
++|+||..||+|.+..+++ |..|+..|+++|.- -.++ +++.......+........+++.+++
T Consensus 12 Lar~LR~lG~Dt~~~~~~~--D~~il~~A~~e~RillTrd~~l-----------~~~~~~~~~~~li~~~~~~~QL~ev~ 78 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDID--DDEILELAREEGRILLTRDRDL-----------LKRRRVSGGVILIRSDDPEEQLREVL 78 (147)
T ss_pred HHHHHHHCCCcEEEeCCCC--hHHHHHHhhhCCeEEEECCHHH-----------HHHhhccCCEEEEcCCCHHHHHHHHH
Confidence 7999999999999999664 45688889888752 1222 22222222222333345566777777
Q ss_pred HHH
Q psy14486 128 EKL 130 (472)
Q Consensus 128 ~~L 130 (472)
+.+
T Consensus 79 ~~~ 81 (147)
T PF01927_consen 79 ERF 81 (147)
T ss_pred HHc
Confidence 766
No 138
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=76.94 E-value=9.6 Score=38.55 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=47.1
Q ss_pred EEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Q psy14486 26 SLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLL 105 (472)
Q Consensus 26 ~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~L 105 (472)
.+..+|--|+|.+||||.-.++-- ..+.+...|.++.+. +.|.-. +.. ..++.++ .++......++-++
T Consensus 4 ~~v~sGiqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~--IADlHa--lt~----~~~~~~l-~~~~~~~~~~~lA~ 72 (332)
T PRK12556 4 KIMLTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYF--IADYHA--LNA----VHDPEQF-RSYTREVAATWLSL 72 (332)
T ss_pred CEEEEEECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEE--Eechhh--ccC----CCCHHHH-HHHHHHHHHHHhhe
Confidence 356788999999999995444321 122333445555443 222221 110 1244544 45666678888899
Q ss_pred CCCCCC-ccccCCCc
Q psy14486 106 HIQPPD-YQPCATNY 119 (472)
Q Consensus 106 gI~~d~-~~~r~s~~ 119 (472)
|++++- .+-..|+.
T Consensus 73 GlDP~k~~if~qS~v 87 (332)
T PRK12556 73 GLDPEDVIFYRQSDV 87 (332)
T ss_pred eecccceEEEECCCc
Confidence 999873 23355653
No 139
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=76.23 E-value=10 Score=31.91 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 348 PHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 348 ~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.+.+.+..++ .+.+++.++..+.+++..+|+|++
T Consensus 47 ~~~~~i~~~~-~~~~~~~l~~~l~~L~~~~~~fy~ 80 (122)
T smart00836 47 RFPEVLEAAA-ETLEPHRLANYLYDLASAFHSFYN 80 (122)
T ss_pred HHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHc
Confidence 3445556666 688999999999999999999985
No 140
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=75.57 E-value=12 Score=38.62 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=62.9
Q ss_pred CCCCC--CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccH---------------HHHHHHHHcCCC---HHHH
Q psy14486 31 GITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDD---------------KIIACAKKNNES---IKTL 90 (472)
Q Consensus 31 gPt~~--g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~---------------ki~~~a~~~g~~---~~~~ 90 (472)
||+|. |.+|++|+..+- +-+-..+..+.|.|+ -|...|++.|.+ ..++
T Consensus 41 ~~~v~icGD~Hl~NFG~~~------------~~~~~~vFdiNDFDEa~~gp~~wDl~Rla~Si~laa~~~gl~~~~~~~~ 108 (385)
T PF10009_consen 41 GPPVWICGDAHLENFGAFA------------SPEGRVVFDINDFDEALPGPFEWDLKRLATSIVLAARENGLSDKDARKA 108 (385)
T ss_pred CCceEEeccchhhccCccc------------CCCCCEEecCCCCCcCCcCChHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 44444 899999999862 556667778888874 356778888886 5678
Q ss_pred HHHHHHHHHHHHHHhCCCCCC--ccccCCCcHHHHHHHHHHHHHC
Q psy14486 91 TSRFIKAAQEDSLLLHIQPPD--YQPCATNYIPQILKMIEKLIFN 133 (472)
Q Consensus 91 ~~~~~~~~~~~l~~LgI~~d~--~~~r~s~~~~~~~~~i~~L~~~ 133 (472)
++.+.+.|.+.|..+.=.... ++.........+..++++..++
T Consensus 109 ~~~~~~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka~~r 153 (385)
T PF10009_consen 109 VRAFLEGYREALADYAGMDPLDVWYFTPDNASGPVRKALKKARKR 153 (385)
T ss_pred HHHHHHHHHHHHHHhcCCChhhceecCchhhHHHHHHHHHHHHHh
Confidence 889999999998887654432 2222234456667777766665
No 141
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=74.23 E-value=4.8 Score=40.75 Aligned_cols=77 Identities=23% Similarity=0.160 Sum_probs=45.7
Q ss_pred hhhhhCCCceEeeeccCCcCchhHHHHHHHhhcc---C--CCCceEEEee--eeE-EecCc--cccccCC---CccCHHH
Q psy14486 221 SCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAY---K--HKFVNYWMHS--GFV-KINNK--KMSKSFG---NFCTIRD 287 (472)
Q Consensus 221 ~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~---g--~~~~~~~~h~--g~l-~~~G~--KMSKS~G---n~i~~~d 287 (472)
+...+-...|+..+|.|.. ||++.-.-...-++ | .+.|...++. ..| -++|. |||||.+ |.|.+.|
T Consensus 131 aaDil~~~~divpvG~DQ~-~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 131 AADILLYKADLVPVGEDQK-QHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred HHHHHhcCCCEEeeccchH-HHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 3333434679999999997 77665443333322 2 1344443321 223 36776 9999999 8887766
Q ss_pred HHhhCChhhHHHHhhh
Q psy14486 288 LLKKYNPEVIRFFILR 303 (472)
Q Consensus 288 ll~~~~~d~lR~~ll~ 303 (472)
+|+.++=-+.+
T Consensus 210 -----~~~~I~~KI~~ 220 (333)
T PRK00927 210 -----DPKTIAKKIKK 220 (333)
T ss_pred -----CHHHHHHHHHh
Confidence 55555554444
No 142
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=64.76 E-value=14 Score=24.25 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhcCChHHhHHHHHHhHh
Q psy14486 425 DIKLKIYFRSEARKRKNFLEADKIRQELVN 454 (472)
Q Consensus 425 ~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~ 454 (472)
.+..|-..-..|=++-||+.|=.|||+|..
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~ 32 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKA 32 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 456667777778889999999999999765
No 143
>PRK13671 hypothetical protein; Provisional
Probab=64.25 E-value=34 Score=34.01 Aligned_cols=87 Identities=15% Similarity=0.014 Sum_probs=50.3
Q ss_pred CCCcCCcccchHHHHHHHHHHHHHHCCC-ceEEecCCCcc--cHH-------HHHHHHHcCCC-----H----HHHHHHH
Q psy14486 34 AYDYCHLGHARLMIVFDIVQRWLRINNY-DVTYVRNITDI--DDK-------IIACAKKNNES-----I----KTLTSRF 94 (472)
Q Consensus 34 ~~g~lHiGhar~~v~~D~l~R~l~~~G~-~v~~v~~~dD~--d~k-------i~~~a~~~g~~-----~----~~~~~~~ 94 (472)
-|+|+|.||++- +....+..|- .|.+++.-+=. +.+ =.+-|.+.|.+ | -+-|+.|
T Consensus 8 eFNP~H~GHl~~------~~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G~DLViELP~~~a~~sAe~F 81 (298)
T PRK13671 8 EYNPFHNGHIYQ------INYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVIKLPFEYATQAAHIF 81 (298)
T ss_pred eeCCccHHHHHH------HHHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcCCCEEEeccHHHHhhchHHH
Confidence 369999999875 3445555554 45555533222 111 12345566876 2 3446788
Q ss_pred HHHHHHHHHHhCCCCCCccccCCCcHHHHHHHH
Q psy14486 95 IKAAQEDSLLLHIQPPDYQPCATNYIPQILKMI 127 (472)
Q Consensus 95 ~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i 127 (472)
...=.+.|..|||..=. |.-.+..++...++.
T Consensus 82 A~gaV~lL~~lgvd~l~-FGsE~~d~~~l~~~a 113 (298)
T PRK13671 82 AKGAIKKLNKEKIDKLI-FGSESNDIELMYKIA 113 (298)
T ss_pred HHHHHHHHHHcCCCEEE-ECCCCCCHHHHHHHH
Confidence 88889999999964432 344443443343333
No 144
>KOG2713|consensus
Probab=62.37 E-value=24 Score=34.55 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=42.0
Q ss_pred eEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy14486 25 VSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLL 104 (472)
Q Consensus 25 v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 104 (472)
.+.+++|.-|+|.+||||.-.++--.+----....|..|.| .+-|+- |.-.+.+|.++ .+.+-.....+-+
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f--~vvDlH------aITvp~dp~~l-rq~~~dm~A~lLA 83 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLF--SVVDLH------AITVPQDPAEL-RQATHDMAASLLA 83 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEE--EEeece------eecCCCChHHH-HHHHHHHHHHHHH
Confidence 46789999999999999976665444433333333444443 222221 11112223322 2344445556666
Q ss_pred hCCCCC
Q psy14486 105 LHIQPP 110 (472)
Q Consensus 105 LgI~~d 110 (472)
.||.+.
T Consensus 84 cGIdp~ 89 (347)
T KOG2713|consen 84 CGIDPE 89 (347)
T ss_pred hccCcc
Confidence 788764
No 145
>KOG2145|consensus
Probab=59.08 E-value=11 Score=36.88 Aligned_cols=48 Identities=29% Similarity=0.342 Sum_probs=33.9
Q ss_pred CCCceEEEEcCCCCC-CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCccc
Q psy14486 21 TPGKVSLYVCGITAY-DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID 73 (472)
Q Consensus 21 ~~~~v~~y~cgPt~~-g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d 73 (472)
+.|+.-...+|-.|+ +.+||||+-+++..--+.-. ++|-.|.-+||-.
T Consensus 81 eq~kpFyLYTGRGpSS~smHlGHliPFiftKwlQe~-----F~vpLVIqlTDDE 129 (397)
T KOG2145|consen 81 EQGKPFYLYTGRGPSSESMHLGHLIPFIFTKWLQDV-----FDVPLVIQLTDDE 129 (397)
T ss_pred HcCCceEEEeCCCCCccccccccchhHHHHHHHHHH-----hCCceEEEecccH
Confidence 345555666676665 99999999999855444444 7788888777743
No 146
>KOG2144|consensus
Probab=57.54 E-value=6.4 Score=38.52 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=40.9
Q ss_pred EcCCCCCCcCCcccchHH-HHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCC-C----HHHHHHHHHHHHHHHH
Q psy14486 29 VCGITAYDYCHLGHARLM-IVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNE-S----IKTLTSRFIKAAQEDS 102 (472)
Q Consensus 29 ~cgPt~~g~lHiGhar~~-v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~-~----~~~~~~~~~~~~~~~l 102 (472)
.-|--|+|.+|||-.-+. =++|++ ..|.+|+... .|+- |.-.++ - ....+..|...+...+
T Consensus 38 YwGtaptGrpHiay~vpm~kiadfl-----kAGC~VtIl~--AD~h------A~LdNmkap~e~~~~rv~yYe~~Ik~~l 104 (360)
T KOG2144|consen 38 YWGTAPTGRPHIAYFVPMMKIADFL-----KAGCEVTILF--ADLH------AFLDNMKAPDELVIRRVGYYEKEIKAAL 104 (360)
T ss_pred eecCCCCCCcceeeeeehhHHHHHH-----hcCCeEEEEe--hHHH------HHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 346778899999985543 233432 3588887543 2221 111111 1 2334568889999999
Q ss_pred HHhCCCCC
Q psy14486 103 LLLHIQPP 110 (472)
Q Consensus 103 ~~LgI~~d 110 (472)
..+|+..+
T Consensus 105 ~~~nv~lE 112 (360)
T KOG2144|consen 105 GSINVPLE 112 (360)
T ss_pred hhcCCcHH
Confidence 99988654
No 147
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=57.51 E-value=21 Score=31.09 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhccChhHHHHHHHHH-HHHH-HHHHH
Q psy14486 347 EPHAKRFIIAMNDDFNTPVAISILFDL-ANII-NKNKS 382 (472)
Q Consensus 347 ~~~~~~~~~al~dd~n~~~al~~l~~l-~~~~-N~~~~ 382 (472)
..+..++.++| ++|++..|+..++++ ...+ |.|++
T Consensus 9 ~~~~~~~~~~~-e~~~f~~a~~~i~~f~~~~~~n~Yl~ 45 (153)
T PF08264_consen 9 NELIKKVTEAY-ENYEFNKALKEIMNFIWNDLSNWYLE 45 (153)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999 889999999999997 4555 99986
No 148
>KOG1610|consensus
Probab=53.11 E-value=34 Score=34.13 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=47.4
Q ss_pred CcCCcccchHHHHHHHHHHHHHHCCCceEE------ecCCCcccHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHh
Q psy14486 36 DYCHLGHARLMIVFDIVQRWLRINNYDVTY------VRNITDIDDKIIACAKKN-NESIKTLTSRFIKAAQEDSLLL 105 (472)
Q Consensus 36 g~lHiGhar~~v~~D~l~R~l~~~G~~v~~------v~~~dD~d~ki~~~a~~~-g~~~~~~~~~~~~~~~~~l~~L 105 (472)
|+--+--+.--..+|+|+|-|+..|.+|.- -.++.+ -++++++.++. +..+.+..+.|-+.|.+++...
T Consensus 176 g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~-~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~~~~ 251 (322)
T KOG1610|consen 176 GPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN-PEKLEKRMKEIWERLPQETKDEYGEDYFEDYKKS 251 (322)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 343444455557899999999999999964 345555 46677666653 5567777777777777776554
No 149
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=46.24 E-value=1.9e+02 Score=24.68 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHC--CCceEEecCCCcccHHHHHHHHHcCCC----------------HHHHHHHHHHHHHHHHHHhC
Q psy14486 45 LMIVFDIVQRWLRIN--NYDVTYVRNITDIDDKIIACAKKNNES----------------IKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 45 ~~v~~D~l~R~l~~~--G~~v~~v~~~dD~d~ki~~~a~~~g~~----------------~~~~~~~~~~~~~~~l~~Lg 106 (472)
+|..+|.....-... +..+..|.-+.-++...+.+|-+.|.+ -...+++-.+..++.|+.+|
T Consensus 11 ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~G 90 (124)
T PF02662_consen 11 AYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELG 90 (124)
T ss_pred cHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcC
Confidence 455566655322221 456667777788888888888887753 35778888999999999999
Q ss_pred CCCCCccc-cCC-----CcHHHHHHHHHHHHHCC
Q psy14486 107 IQPPDYQP-CAT-----NYIPQILKMIEKLIFNG 134 (472)
Q Consensus 107 I~~d~~~~-r~s-----~~~~~~~~~i~~L~~~G 134 (472)
|.++-+.. ..+ ...+.+.++.++|.+-|
T Consensus 91 i~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~lG 124 (124)
T PF02662_consen 91 IEPERVRLYWISAPEGKRFAEIVNEFTERIKELG 124 (124)
T ss_pred CChhHeEEEEeCcccHHHHHHHHHHHHHHHHHcC
Confidence 99886521 112 24456666666665543
No 150
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.73 E-value=44 Score=30.79 Aligned_cols=86 Identities=13% Similarity=0.053 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHH---HHHHHHHHHHHHHhCCCCCCc--cccCC
Q psy14486 43 ARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLT---SRFIKAAQEDSLLLHIQPPDY--QPCAT 117 (472)
Q Consensus 43 ar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~---~~~~~~~~~~l~~LgI~~d~~--~~r~s 117 (472)
+++.|.-|+|+..|+..||.|.+-.+.=+ .+.++.++. ..-.+.+.+. .......+.- ..-.|
T Consensus 85 a~p~Vp~~vl~daLk~~GyrVevr~~~l~-----------T~ap~~ev~E~vreLse~~~E~-~~~~lt~~vrklVv~~S 152 (204)
T COG3286 85 ASPNVPPDVLIDALKLLGYRVEVRGGELK-----------TNAPWSEVVELVRELSEVYREA-RFQPLTRQVRKLVVAVS 152 (204)
T ss_pred hcCCCCHHHHHHHHHhCCceEEeeCceee-----------cCCCHHHHHHHHHHHHHHHHHH-Hhccccchhhhhhhhhh
Confidence 44668899999999999999998877621 223343332 2222222222 2222211110 01111
Q ss_pred -CcHHHHHHHHHHHHHCCCccccC
Q psy14486 118 -NYIPQILKMIEKLIFNGLAYQNN 140 (472)
Q Consensus 118 -~~~~~~~~~i~~L~~~G~~y~~~ 140 (472)
.+--...++++.+++.|++-+++
T Consensus 153 ~~~~~~~dd~~eeave~Gll~e~E 176 (204)
T COG3286 153 IVYGLDPDDAAEEAVELGLLEEGE 176 (204)
T ss_pred hHhCCCHHHHHHHHHHhhhhhccc
Confidence 12224567889999999998875
No 151
>PRK09620 hypothetical protein; Provisional
Probab=39.97 E-value=48 Score=31.57 Aligned_cols=48 Identities=17% Similarity=0.040 Sum_probs=38.7
Q ss_pred CceEEEEcCCCCC---CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCC
Q psy14486 23 GKVSLYVCGITAY---DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNIT 70 (472)
Q Consensus 23 ~~v~~y~cgPt~~---g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~d 70 (472)
|+..+.++|||.= ..=.|+|..+--++-.+++.|..+|++|+++.|..
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4556778888854 44578888888888899999999999999998764
No 152
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.88 E-value=74 Score=27.49 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcC
Q psy14486 47 IVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNN 84 (472)
Q Consensus 47 v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g 84 (472)
+-+++++++|+..||+|...-.....+ .+++.|.+.+
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~~s~e-~~v~aa~e~~ 53 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLFQTPE-EIARQAVEAD 53 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCCCCHH-HHHHHHHHcC
Confidence 567899999999999999765543333 4555555544
No 153
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=35.91 E-value=31 Score=29.25 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=20.8
Q ss_pred cccchHHHHHHHHHHHHHHCCCceEEecC
Q psy14486 40 LGHARLMIVFDIVQRWLRINNYDVTYVRN 68 (472)
Q Consensus 40 iGhar~~v~~D~l~R~l~~~G~~v~~v~~ 68 (472)
-||..+++ .+++.|+.+|++|.+...
T Consensus 9 ~Ghv~P~l---ala~~L~~rGh~V~~~~~ 34 (139)
T PF03033_consen 9 RGHVYPFL---ALARALRRRGHEVRLATP 34 (139)
T ss_dssp HHHHHHHH---HHHHHHHHTT-EEEEEET
T ss_pred hhHHHHHH---HHHHHHhccCCeEEEeec
Confidence 48888877 699999999999996654
No 154
>PLN02413 choline-phosphate cytidylyltransferase
Probab=35.81 E-value=38 Score=33.37 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=27.0
Q ss_pred CCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCC
Q psy14486 21 TPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNI 69 (472)
Q Consensus 21 ~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~ 69 (472)
.+..+.+|+.| +++-+|.||++-. .++ +..|-.+..|.|+
T Consensus 24 ~~r~~rVyvdG--~FDLfH~GHir~L------~qA-K~lg~~d~LIVGV 63 (294)
T PLN02413 24 SDRPVRVYADG--IYDLFHFGHARSL------EQA-KKLFPNTYLLVGC 63 (294)
T ss_pred CCCceEEEEeC--chhhCCHHHHHHH------HHH-HHhCCCCEEEEEe
Confidence 45678888875 7899999998863 333 3444345566665
No 155
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=35.35 E-value=16 Score=30.00 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=15.8
Q ss_pred cCCCCCCcCCcccchHHHHHHHHHHHHHHC
Q psy14486 30 CGITAYDYCHLGHARLMIVFDIVQRWLRIN 59 (472)
Q Consensus 30 cgPt~~g~lHiGhar~~v~~D~l~R~l~~~ 59 (472)
.|.++ |++|+||..- +.+..+..
T Consensus 4 ~~G~F-dp~H~GH~~l------~~~a~~~~ 26 (105)
T cd02156 4 FPGEP-GYLHIGHAKL------ICRAKGIA 26 (105)
T ss_pred eCCCC-CCCCHHHHHH------HHHHHHhC
Confidence 46677 9999999763 44555554
No 156
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.54 E-value=1.7e+02 Score=25.43 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=44.0
Q ss_pred CCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCc
Q psy14486 33 TAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDY 112 (472)
Q Consensus 33 t~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~ 112 (472)
||-|..|- +-..++++.|+..||+|.+. |.+---++++++|++++.+ .++++
T Consensus 8 tv~~D~Hd------iGk~iv~~~l~~~GfeVi~L-G~~v~~e~~v~aa~~~~ad-----------------iVglS---- 59 (134)
T TIGR01501 8 VIGSDCHA------VGNKILDHAFTNAGFNVVNL-GVLSPQEEFIKAAIETKAD-----------------AILVS---- 59 (134)
T ss_pred EecCChhh------HhHHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCC-----------------EEEEe----
Confidence 44455552 34577899999999999865 3333334555565554321 12221
Q ss_pred cccCCCcHHHHHHHHHHHHHCCC
Q psy14486 113 QPCATNYIPQILKMIEKLIFNGL 135 (472)
Q Consensus 113 ~~r~s~~~~~~~~~i~~L~~~G~ 135 (472)
...+.+.+.+.++++.|.++|+
T Consensus 60 -~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 60 -SLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred -cccccCHHHHHHHHHHHHHCCC
Confidence 1224666677777777777765
No 157
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.79 E-value=45 Score=30.66 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=34.1
Q ss_pred CceEEEEcCCCCC--CcC-CcccchHHHHHHHHHHHHHHCCCceEEecCCCccc
Q psy14486 23 GKVSLYVCGITAY--DYC-HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID 73 (472)
Q Consensus 23 ~~v~~y~cgPt~~--g~l-HiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d 73 (472)
|+-.+.+.|||-- ++. =|+|..+--.+-.+++.+..+|++|+++.|-....
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~ 56 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP 56 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS--
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc
Confidence 4455667777764 433 47888888999999999999999999999886433
No 158
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]
Probab=32.03 E-value=1.6e+02 Score=27.00 Aligned_cols=60 Identities=17% Similarity=0.050 Sum_probs=46.0
Q ss_pred CceEEEEcCCCCC-CcCCcccchH--HHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHc
Q psy14486 23 GKVSLYVCGITAY-DYCHLGHARL--MIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN 83 (472)
Q Consensus 23 ~~v~~y~cgPt~~-g~lHiGhar~--~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~ 83 (472)
..-.||.|||.+. +.-++|.+.+ ..-.|-+.+.+-.++ .+..+.|-...++.+.+..++.
T Consensus 54 ~g~~Iy~aGP~~~~~~~~v~s~GPTTs~RMd~~~~~~l~~~-G~~~~iGKG~~~~~~~ea~~~~ 116 (184)
T COG1838 54 KGHIIYYAGPVKTKDGWVVGSAGPTTSGRMDKFTDELLEQT-GVLAMIGKGGRGPETVEACKKH 116 (184)
T ss_pred CCCEEEEeccccCCCCceeeccCCcchhhhhhhHHHHHHhc-CeEEEEecCCcCHHHHHHHHHc
Confidence 3447899999998 7889999984 566677777776664 5777888888888877777764
No 159
>KOG2804|consensus
Probab=31.65 E-value=22 Score=35.00 Aligned_cols=41 Identities=29% Similarity=0.430 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCC
Q psy14486 21 TPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNIT 70 (472)
Q Consensus 21 ~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~d 70 (472)
.+..|+||.-| +|+-.|.||||..-.+ ..+ =-+|+.+.|+.
T Consensus 60 ~~RPVRVYADG--IyDLFH~GHarqL~Qa------K~~-FPNvyLiVGvc 100 (348)
T KOG2804|consen 60 TDRPVRVYADG--IYDLFHYGHARQLEQA------KKL-FPNVYLIVGVC 100 (348)
T ss_pred CCCceEEEccc--hHHHhhhhHHHHHHHH------HHh-CCCeEEEEeec
Confidence 34679999887 7999999999985322 111 13577777764
No 160
>KOG2623|consensus
Probab=31.27 E-value=53 Score=33.71 Aligned_cols=45 Identities=11% Similarity=0.257 Sum_probs=28.5
Q ss_pred EEEcCCCCC-CcCCcccchHHHHHHHHHHHHHHCCCceEEecC-C-CcccHH
Q psy14486 27 LYVCGITAY-DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRN-I-TDIDDK 75 (472)
Q Consensus 27 ~y~cgPt~~-g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~-~-dD~d~k 75 (472)
-..||--|+ ..+|+||+-..+ .+.++. ..|+++.-+.| . .-+||+
T Consensus 65 ~vYcGfDPTA~SLHvGNLl~lm---~L~hfq-r~Gh~~ialIGgATa~vGDP 112 (467)
T KOG2623|consen 65 YVYCGFDPTAESLHVGNLLALM---VLIHFQ-RAGHRPIALIGGATASVGDP 112 (467)
T ss_pred eEEecCCCcHHhhhhcchHHHH---HHHHHH-HcCCCceEEeccccccccCC
Confidence 355887777 899999976553 344443 45888876654 2 244544
No 161
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=31.13 E-value=2.1e+02 Score=24.64 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHH
Q psy14486 47 IVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKM 126 (472)
Q Consensus 47 v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~ 126 (472)
+-.+++++.|+..||+|.+. |.+---.++++.|.+++.+ .++++ .-.+.+.+.+.++
T Consensus 14 iGkniv~~~L~~~GfeVidL-G~~v~~e~~v~aa~~~~ad-----------------iVglS-----~L~t~~~~~~~~~ 70 (128)
T cd02072 14 VGNKILDHAFTEAGFNVVNL-GVLSPQEEFIDAAIETDAD-----------------AILVS-----SLYGHGEIDCKGL 70 (128)
T ss_pred HHHHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCC-----------------EEEEe-----ccccCCHHHHHHH
Confidence 44578999999999999864 3333334555555554321 12221 1224566677777
Q ss_pred HHHHHHCCC
Q psy14486 127 IEKLIFNGL 135 (472)
Q Consensus 127 i~~L~~~G~ 135 (472)
++.|.++|+
T Consensus 71 ~~~l~~~gl 79 (128)
T cd02072 71 REKCDEAGL 79 (128)
T ss_pred HHHHHHCCC
Confidence 777777665
No 162
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.47 E-value=2e+02 Score=23.28 Aligned_cols=37 Identities=14% Similarity=-0.077 Sum_probs=24.1
Q ss_pred CCcCCccc-chHHHHHHHHHHHHHHCCCceEEecCCCccc
Q psy14486 35 YDYCHLGH-ARLMIVFDIVQRWLRINNYDVTYVRNITDID 73 (472)
Q Consensus 35 ~g~lHiGh-ar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d 73 (472)
.|.+|.|+ +-+- +.-.-+.|+..|.++.+++|-+...
T Consensus 6 dGvl~~g~~~ipg--a~e~l~~L~~~g~~~~~lTNns~~s 43 (101)
T PF13344_consen 6 DGVLYNGNEPIPG--AVEALDALRERGKPVVFLTNNSSRS 43 (101)
T ss_dssp TTTSEETTEE-TT--HHHHHHHHHHTTSEEEEEES-SSS-
T ss_pred ccEeEeCCCcCcC--HHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 57777777 3332 2334566778899999999987655
No 163
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=30.45 E-value=78 Score=25.53 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=25.0
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceE
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVT 64 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~ 64 (472)
+|++||-- |.+ -.+.-.++-.++.|+..||.|.
T Consensus 1 iYIaGPmt-G~~----~~N~~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 1 IYIAGPMT-GLP----DYNRPAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred CeEeCCcC-CCc----chHHHHHHHHHHHHHHCCCEEe
Confidence 58888865 433 3355678889999999998887
No 164
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=28.16 E-value=57 Score=26.43 Aligned_cols=42 Identities=12% Similarity=-0.081 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCCCCccccCC-CcHHHHHHHHHHHHHCCCcccc
Q psy14486 98 AQEDSLLLHIQPPDYQPCAT-NYIPQILKMIEKLIFNGLAYQN 139 (472)
Q Consensus 98 ~~~~l~~LgI~~d~~~~r~s-~~~~~~~~~i~~L~~~G~~y~~ 139 (472)
+...+...|++++....+.+ -..+++.+.+++|.+.|++.+.
T Consensus 12 IL~hl~~~~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 12 ILQHLKKAGPDYAKSIARRLKIPLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred HHHHHHHHCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEe
Confidence 45556666666665444444 4568999999999999999876
No 165
>PRK09875 putative hydrolase; Provisional
Probab=28.11 E-value=1.3e+02 Score=29.91 Aligned_cols=14 Identities=0% Similarity=-0.308 Sum_probs=7.4
Q ss_pred HHHHHHhCCCCCCc
Q psy14486 99 QEDSLLLHIQPPDY 112 (472)
Q Consensus 99 ~~~l~~LgI~~d~~ 112 (472)
.+.++..|+.++-+
T Consensus 169 l~il~e~Gvd~~rv 182 (292)
T PRK09875 169 LALLQAHGVDLSRV 182 (292)
T ss_pred HHHHHHcCcCcceE
Confidence 44555666655433
No 166
>KOG2713|consensus
Probab=26.88 E-value=84 Score=30.97 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHH-----HHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCcccc
Q psy14486 86 SIKTLTSRFIKAA-----QEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQN 139 (472)
Q Consensus 86 ~~~~~~~~~~~~~-----~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~ 139 (472)
.|-++.+.|..-+ .-|+.++-+..|. . +......++.-.|++=|.=-++
T Consensus 37 ~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp---~--~lrq~~~dm~A~lLAcGIdp~K 90 (347)
T KOG2713|consen 37 PWVQLQNEYDKNILVLFSVVDLHAITVPQDP---A--ELRQATHDMAASLLACGIDPEK 90 (347)
T ss_pred HHHHHHHHhcCCceEEEEEeeceeecCCCCh---H--HHHHHHHHHHHHHHHhccCccc
Confidence 3556666665522 2344444443332 2 4445666777788888876554
No 167
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=25.98 E-value=95 Score=23.97 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHCCCceEEec
Q psy14486 47 IVFDIVQRWLRINNYDVTYVR 67 (472)
Q Consensus 47 v~~D~l~R~l~~~G~~v~~v~ 67 (472)
+.-=++++.|+..|++..-..
T Consensus 7 ll~~~Vaqil~~~Gf~~~~~s 27 (77)
T smart00576 7 LLRIAVAQILESAGFDSFQES 27 (77)
T ss_pred HHHHHHHHHHHHcCccccCHH
Confidence 444567888888887765433
No 168
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=25.92 E-value=4e+02 Score=25.23 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=57.4
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~Lg 106 (472)
+..|+-+.++.+=.-|+.++ ++..++-.+..|.|+..-.-.. -.+.|.+.+++.|+.+|
T Consensus 4 L~Ls~~~~~~~~~~~~~~~~-----i~n~l~g~~~~i~FIPtAs~~~----------------~~~~Yv~k~~~~l~~lg 62 (224)
T COG3340 4 LLLSSSTFSFEDVLEHFLPF-----IANFLQGKRKTIAFIPTASVDS----------------EDDFYVEKVRNALAKLG 62 (224)
T ss_pred EEecCCCcccchhhhhhhHH-----HHHHhcCCCceEEEEecCcccc----------------chHHHHHHHHHHHHHcC
Confidence 44566566655555555555 5566665567888887432110 11489999999999999
Q ss_pred CCCCCccccCCCcHHHHHHHHHHHHHCCCcccc
Q psy14486 107 IQPPDYQPCATNYIPQILKMIEKLIFNGLAYQN 139 (472)
Q Consensus 107 I~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~ 139 (472)
+..... ++.+.+.+.+. ..|.++..+|..
T Consensus 63 ~~v~~L-~l~~~~~~~Ie---~~l~~~d~IyVg 91 (224)
T COG3340 63 LEVSEL-HLSKPPLAAIE---NKLMKADIIYVG 91 (224)
T ss_pred Ceeeee-eccCCCHHHHH---HhhhhccEEEEC
Confidence 999887 56666655444 345667777776
No 169
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=25.56 E-value=68 Score=31.36 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=27.1
Q ss_pred ccc-chHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCC
Q psy14486 40 LGH-ARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNES 86 (472)
Q Consensus 40 iGh-ar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~ 86 (472)
+|| .|+.. |++.|+.+|++|.|++.-+.- ..+...++.|.+
T Consensus 14 ~GHv~Rcl~----LA~~l~~~g~~v~f~~~~~~~--~~~~~i~~~g~~ 55 (279)
T TIGR03590 14 LGHVMRCLT----LARALHAQGAEVAFACKPLPG--DLIDLLLSAGFP 55 (279)
T ss_pred ccHHHHHHH----HHHHHHHCCCEEEEEeCCCCH--HHHHHHHHcCCe
Confidence 788 66765 566667789999999876532 233444555554
No 170
>KOG2805|consensus
Probab=25.41 E-value=73 Score=31.79 Aligned_cols=77 Identities=19% Similarity=0.218 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCCceE--EecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHH
Q psy14486 49 FDIVQRWLRINNYDVT--YVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKM 126 (472)
Q Consensus 49 ~D~l~R~l~~~G~~v~--~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~ 126 (472)
.-+-++.|+.+||+|+ |..|+++.|+.-- .-| +++=.+.-....+.|||....+ ..+.||=..+-+-
T Consensus 18 SsVaa~Ll~~~g~~v~gv~M~nWd~~de~~s-------~cp---~e~D~~da~~Vc~~LnI~~~~V-nf~kEYW~~Vfs~ 86 (377)
T KOG2805|consen 18 SSVAARLLAARGYNVTGVFMKNWDSLDEFGS-------QCP---AERDWKDAKRVCKQLNIPLHQV-NFVKEYWNDVFSP 86 (377)
T ss_pred HHHHHHHHHhcCCCeeEEeeecccccccccc-------CCC---chhhHHHHHHHHHHhCCeeEEE-eeHHHHHHHHHHH
Confidence 3456788999999996 6778877764310 000 0111122234556778877654 3444666666666
Q ss_pred HHHHHHCCCc
Q psy14486 127 IEKLIFNGLA 136 (472)
Q Consensus 127 i~~L~~~G~~ 136 (472)
+.+.+++|..
T Consensus 87 ~L~~Y~~G~T 96 (377)
T KOG2805|consen 87 FLEEYENGRT 96 (377)
T ss_pred HHHHHhcCCC
Confidence 6667777764
No 171
>KOG0370|consensus
Probab=24.91 E-value=2.9e+02 Score=32.00 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=67.4
Q ss_pred eeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHH-HHHHHHHHHHHHCCCceEEecC-----CCcccH--HH
Q psy14486 5 RIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLM-IVFDIVQRWLRINNYDVTYVRN-----ITDIDD--KI 76 (472)
Q Consensus 5 ~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~-v~~D~l~R~l~~~G~~v~~v~~-----~dD~d~--ki 76 (472)
+||-|.........- +++ .+.+-|--|| |||.--.+ -.+=--.|.||..|++...|.. .||+|. +.
T Consensus 902 YLY~tyn~~~hDv~F-~~~--g~mVlGsGvY---rIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrL 975 (1435)
T KOG0370|consen 902 YLYTTYNATEHDVDF-NEH--GVMVLGSGVY---RIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRL 975 (1435)
T ss_pred eEEEEecCccccccc-CCC--ceEEEcccce---ecccceeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhH
Confidence 455555544433222 223 3444555455 88874322 1222357999999999999876 467752 11
Q ss_pred --HH--------------------------------HHHH-----cCCCHHHHH-HHHHHHHHHHHHHhCCCCCCccccC
Q psy14486 77 --IA--------------------------------CAKK-----NNESIKTLT-SRFIKAAQEDSLLLHIQPPDYQPCA 116 (472)
Q Consensus 77 --~~--------------------------------~a~~-----~g~~~~~~~-~~~~~~~~~~l~~LgI~~d~~~~r~ 116 (472)
++ ...+ .|.+|..+- .+..-.|-..|+.+||..|.| +.
T Consensus 976 YFeeis~E~vmDiYe~E~~~G~iis~GGQ~pnNiA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~W--ke 1053 (1435)
T KOG0370|consen 976 YFEEISYERVMDIYELENSEGIIISVGGQLPNNIALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAW--KE 1053 (1435)
T ss_pred hHhhhhhhhhhhhhhhccCCceEEEecCcCcchhhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhh--hh
Confidence 00 0001 244555552 355667888999999999887 44
Q ss_pred CCcHHHHHHHHHH
Q psy14486 117 TNYIPQILKMIEK 129 (472)
Q Consensus 117 s~~~~~~~~~i~~ 129 (472)
....++..++.++
T Consensus 1054 lt~~~eA~~F~~~ 1066 (1435)
T KOG0370|consen 1054 LTSLEEAKKFAEK 1066 (1435)
T ss_pred hccHHHHHHHHHh
Confidence 4556666666544
No 172
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=24.65 E-value=2.9e+02 Score=23.90 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHH
Q psy14486 47 IVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKK 82 (472)
Q Consensus 47 v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~ 82 (472)
+-..+++++||..||+|.+.---. --+.+...|.+
T Consensus 18 lG~~iv~~~lr~~G~eVi~LG~~v-p~e~i~~~a~~ 52 (137)
T PRK02261 18 VGNKILDRALTEAGFEVINLGVMT-SQEEFIDAAIE 52 (137)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCC-CHHHHHHHHHH
Confidence 334578899999999999864221 12344444444
No 173
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=23.59 E-value=99 Score=27.34 Aligned_cols=27 Identities=33% Similarity=0.657 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHH
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRI 58 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~ 58 (472)
++++|++| ..+++|.||++- |.++.++
T Consensus 2 ~~rV~~~G--~FDl~H~GHi~~------L~~A~~l 28 (150)
T cd02174 2 PVRVYVDG--CFDLFHYGHANA------LRQAKKL 28 (150)
T ss_pred CeEEEEeC--ccCCCCHHHHHH------HHHHHHh
Confidence 35778776 579999999763 5555544
No 174
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=22.97 E-value=1.2e+02 Score=25.97 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=30.9
Q ss_pred cccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHH
Q psy14486 40 LGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIAC 79 (472)
Q Consensus 40 iGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~ 79 (472)
|||.+.--+++.+.++|+..|.++.-...-...+..|+.+
T Consensus 4 Ivhg~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~ 43 (125)
T PF10137_consen 4 IVHGRDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEK 43 (125)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHH
Confidence 7888888899999999999999887655555556554443
No 175
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=22.37 E-value=3.1e+02 Score=19.88 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCCCCCccccCC-------CcHHHHHHHHHHHHHCCCccccCCCccCCcEEE
Q psy14486 93 RFIKAAQEDSLLLHIQPPDYQPCAT-------NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNY 150 (472)
Q Consensus 93 ~~~~~~~~~l~~LgI~~d~~~~r~s-------~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f 150 (472)
.-.+.+.+.+..=.+.+....|... -....+.+.+..|.+.|+++... +..+|
T Consensus 4 ~i~~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~-----~~G~~ 63 (64)
T PF00392_consen 4 QIYDQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIERRP-----GRGTF 63 (64)
T ss_dssp HHHHHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET-----TTEEE
T ss_pred HHHHHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEEC-----CceEE
Confidence 3445556666666666666554443 24568899999999999999773 55554
No 176
>COG3110 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.89 E-value=49 Score=30.73 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.7
Q ss_pred eeEEecCccccccCCCc
Q psy14486 266 GFVKINNKKMSKSFGNF 282 (472)
Q Consensus 266 g~l~~~G~KMSKS~Gn~ 282 (472)
.+|-++|+|||+|+...
T Consensus 30 DlLvvdG~K~SgsLlk~ 46 (216)
T COG3110 30 DLLVVDGKKVSGSLLKG 46 (216)
T ss_pred cEEEecCcccccccccC
Confidence 77889999999998764
No 177
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.30 E-value=4e+02 Score=22.25 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcC
Q psy14486 47 IVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNN 84 (472)
Q Consensus 47 v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g 84 (472)
+-..+++.+++..||+|.+.-.-.... .+...|.+.+
T Consensus 14 lG~~~~~~~l~~~G~~vi~lG~~vp~e-~~~~~a~~~~ 50 (122)
T cd02071 14 RGAKVIARALRDAGFEVIYTGLRQTPE-EIVEAAIQED 50 (122)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHH-HHHHHHHHcC
Confidence 456778899999999999877554433 4455555543
No 178
>PHA02754 hypothetical protein; Provisional
Probab=20.85 E-value=1.1e+02 Score=22.35 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=19.0
Q ss_pred cCChHHh-HHHHHHhHhCCcEEEe
Q psy14486 439 RKNFLEA-DKIRQELVNNGIILED 461 (472)
Q Consensus 439 ~Kdf~~a-D~iRd~L~~~Gi~v~D 461 (472)
+|||.+| -++||.|.+.||-|.-
T Consensus 13 eK~Fke~MRelkD~LSe~GiYi~R 36 (67)
T PHA02754 13 EKDFKEAMRELKDILSEAGIYIDR 36 (67)
T ss_pred HhHHHHHHHHHHHHHhhCceEEEE
Confidence 6888887 4689999999998764
No 179
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=20.11 E-value=1e+02 Score=27.65 Aligned_cols=34 Identities=21% Similarity=0.067 Sum_probs=25.2
Q ss_pred EEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCc
Q psy14486 26 SLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62 (472)
Q Consensus 26 ~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~ 62 (472)
.-|..++.|.|..=.+ .-|..|++.|++|..|++
T Consensus 17 ~~Y~~~~YP~GDvp~~---~GVCTDVViRA~R~~g~D 50 (164)
T PF06940_consen 17 PAYYSIGYPNGDVPDN---TGVCTDVVIRAYRDAGYD 50 (164)
T ss_pred CCeEecCCCCCCCCCC---CCccHHHHHHHHHHcCCC
Confidence 3477888888755444 347789999999988864
No 180
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=20.01 E-value=1.6e+02 Score=31.46 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=42.6
Q ss_pred CceEEEEcCCCCC---CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcc
Q psy14486 23 GKVSLYVCGITAY---DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDI 72 (472)
Q Consensus 23 ~~v~~y~cgPt~~---g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~ 72 (472)
|+-.+.+.|||.= ..=-|+|-.+--.+-.|++.+..+|.+|++|+|-.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~ 308 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDL 308 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCC
Confidence 5556788899985 4457999999999999999999999999999987654
Done!