Query psy14486
Match_columns 472
No_of_seqs 325 out of 2426
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 21:03:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 100.0 5E-123 2E-127 959.0 39.0 452 1-472 3-462 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 100.0 1E-118 5E-123 928.9 34.3 452 1-472 22-501 (501)
3 1li5_A Cysrs, cysteinyl-tRNA s 100.0 8E-111 3E-115 876.4 39.0 453 4-472 2-461 (461)
4 3c8z_A Cysteinyl-tRNA syntheta 100.0 1E-87 3.4E-92 695.2 34.2 384 2-399 19-413 (414)
5 2csx_A Methionyl-tRNA syntheta 100.0 4.7E-60 1.6E-64 501.0 22.2 347 24-382 4-417 (497)
6 2d5b_A Methionyl-tRNA syntheta 100.0 3.2E-58 1.1E-62 487.5 28.9 344 26-382 4-419 (500)
7 1rqg_A Methionyl-tRNA syntheta 100.0 1E-55 3.5E-60 484.3 26.4 350 25-382 4-471 (722)
8 2x1l_A Methionyl-tRNA syntheta 100.0 1E-55 3.5E-60 470.7 25.2 345 24-382 13-437 (524)
9 3u1f_A Methionyl-tRNA syntheta 100.0 7.8E-56 2.7E-60 473.7 23.1 348 26-382 10-449 (542)
10 4dlp_A Aminoacyl-tRNA syntheta 100.0 1.9E-53 6.6E-58 453.9 28.1 358 13-382 13-448 (536)
11 3kfl_A Methionyl-tRNA syntheta 100.0 5E-54 1.7E-58 460.2 21.5 362 12-382 12-465 (564)
12 3h99_A Methionyl-tRNA syntheta 100.0 8.5E-53 2.9E-57 451.2 24.6 355 17-382 10-469 (560)
13 1iq0_A Arginyl-tRNA synthetase 100.0 1.9E-47 6.4E-52 410.6 18.0 339 24-382 104-544 (592)
14 1irx_A Lysyl-tRNA synthetase; 100.0 7.5E-49 2.6E-53 416.5 6.1 278 27-334 21-340 (523)
15 2zue_A Arginyl-tRNA synthetase 100.0 6E-46 2E-50 400.2 15.0 353 21-401 117-626 (629)
16 1gax_A Valrs, valyl-tRNA synth 100.0 1.9E-43 6.5E-48 392.0 24.6 351 24-382 35-651 (862)
17 1wkb_A Leucyl-tRNA synthetase; 100.0 3.9E-42 1.3E-46 383.0 28.4 155 227-382 602-769 (810)
18 1ffy_A Isoleucyl-tRNA syntheta 100.0 4.4E-41 1.5E-45 375.9 27.6 351 24-382 49-722 (917)
19 1ile_A Ilers, isoleucyl-tRNA s 100.0 8.3E-42 2.8E-46 380.1 20.5 350 24-382 39-721 (821)
20 1wz2_A Leucyl-tRNA synthetase; 100.0 1.7E-40 5.8E-45 374.4 31.2 155 227-382 602-769 (967)
21 4arc_A Leucine--tRNA ligase; l 100.0 3.7E-41 1.3E-45 372.5 24.6 135 15-154 42-182 (880)
22 1f7u_A Arginyl-tRNA synthetase 100.0 2.1E-41 7.1E-46 362.5 18.9 324 21-401 141-604 (607)
23 2v0c_A Aminoacyl-tRNA syntheta 100.0 4.9E-39 1.7E-43 358.0 31.3 127 23-154 31-162 (878)
24 3fnr_A Arginyl-tRNA synthetase 100.0 1.9E-34 6.5E-39 299.2 28.3 331 21-401 28-451 (464)
25 3aii_A Glutamyl-tRNA synthetas 100.0 1.7E-36 5.7E-41 316.1 8.9 251 29-323 100-395 (553)
26 1qtq_A GLNRS, protein (glutami 100.0 1.4E-35 4.8E-40 309.1 10.4 250 29-322 30-332 (553)
27 2hz7_A Glutaminyl-tRNA synthet 100.0 1.5E-34 5.3E-39 313.1 10.7 257 22-322 61-372 (851)
28 2cfo_A Glutamyl-tRNA synthetas 100.0 9.5E-31 3.2E-35 272.8 10.0 238 30-318 6-295 (492)
29 1nzj_A Hypothetical protein YA 99.9 1.8E-28 6.1E-33 240.6 7.1 213 31-287 11-240 (298)
30 2o5r_A Glutamyl-tRNA synthetas 99.9 3.2E-21 1.1E-25 200.9 17.7 230 24-304 12-292 (481)
31 1j09_A Glutamyl-tRNA synthetas 99.9 2.2E-21 7.7E-26 201.0 14.0 236 31-317 7-289 (468)
32 3afh_A Glutamyl-tRNA synthetas 99.8 8.1E-20 2.8E-24 190.1 17.4 235 30-317 30-300 (488)
33 4g6z_A Glutamate-tRNA ligase; 99.8 8.2E-20 2.8E-24 189.1 16.8 250 31-319 31-311 (490)
34 3al0_C Glutamyl-tRNA(Gln) amid 99.8 2.2E-20 7.4E-25 198.7 12.3 228 24-305 129-390 (592)
35 2ja2_A Glutamyl-tRNA synthetas 99.8 6.5E-18 2.2E-22 175.8 17.1 239 31-304 12-287 (498)
36 4gri_A Glutamate--tRNA ligase; 99.7 1.3E-17 4.5E-22 175.4 15.7 254 31-320 30-322 (512)
37 2cyb_A Tyrosyl-tRNA synthetase 98.8 1.8E-08 6.2E-13 99.9 11.1 69 228-304 170-239 (323)
38 2g36_A Tryptophanyl-tRNA synth 98.4 2.5E-06 8.7E-11 84.8 14.9 75 224-304 149-230 (340)
39 2el7_A Tryptophanyl-tRNA synth 98.4 7E-06 2.4E-10 81.6 16.7 72 227-304 140-220 (337)
40 2dlc_X Tyrosyl-tRNA synthetase 98.2 1.2E-06 4.2E-11 88.9 6.1 70 227-304 181-253 (394)
41 1n3l_A Tyrosyl-tRNA synthetase 98.1 2.1E-06 7.3E-11 86.5 6.3 69 228-304 178-248 (372)
42 1i6k_A TRPRS, tryptophanyl-tRN 98.1 4.8E-05 1.6E-09 75.3 15.5 75 223-303 132-219 (328)
43 3hzr_A Tryptophanyl-tRNA synth 98.0 3.2E-05 1.1E-09 77.9 12.2 67 229-303 225-294 (386)
44 2cya_A Tyrosyl-tRNA synthetase 98.0 1.8E-05 6.3E-10 79.4 10.2 70 227-304 176-264 (364)
45 2zp1_A Tyrosyl-tRNA synthetase 97.9 7E-06 2.4E-10 80.9 5.3 65 228-304 163-229 (314)
46 3vgj_A Tyrosyl-tRNA synthetase 97.8 6.6E-05 2.2E-09 75.5 10.5 69 228-303 200-272 (373)
47 3prh_A Tryptophanyl-tRNA synth 97.6 0.002 6.9E-08 64.7 18.0 78 28-119 38-117 (388)
48 2j5b_A Tyrosyl-tRNA synthetase 97.6 6.6E-05 2.3E-09 74.9 6.6 68 228-303 186-257 (348)
49 2cyc_A Tyrosyl-tRNA synthetase 97.6 0.00014 4.7E-09 73.3 8.6 72 227-304 179-277 (375)
50 3jxe_A Tryptophanyl-tRNA synth 97.5 0.0002 6.8E-09 72.3 8.9 87 23-121 72-160 (392)
51 3i05_A Tryptophanyl-tRNA synth 97.5 4.1E-05 1.4E-09 77.4 3.1 67 229-303 225-294 (395)
52 3hv0_A Tryptophanyl-tRNA synth 97.5 0.00036 1.2E-08 70.4 9.9 76 24-111 74-151 (393)
53 2ip1_A Tryptophanyl-tRNA synth 97.4 0.00024 8.2E-09 72.7 7.5 68 228-303 249-320 (432)
54 3a04_A Tryptophanyl-tRNA synth 97.3 0.00024 8.3E-09 71.4 6.6 93 23-126 68-161 (372)
55 3tze_A Tryptophanyl-tRNA synth 97.3 0.00011 3.8E-09 74.5 3.1 70 226-303 241-314 (406)
56 1r6t_A Tryptophanyl-tRNA synth 97.2 5.2E-05 1.8E-09 78.6 0.6 66 230-303 305-374 (477)
57 3p0j_A Tyrosyl-tRNA synthetase 97.2 0.0012 4.2E-08 71.3 10.1 57 228-286 183-243 (690)
58 3tzl_A Tryptophanyl-tRNA synth 97.0 0.00059 2E-08 67.2 4.9 72 227-304 138-217 (322)
59 1yi8_B Tryptophanyl-tRNA synth 96.9 0.0039 1.3E-07 62.1 10.5 70 228-303 162-239 (351)
60 2yxn_A Tyrosyl-tRNA synthetase 96.7 0.00062 2.1E-08 67.1 3.0 72 228-304 191-263 (322)
61 2pid_A Tyrosyl-tRNA synthetase 96.6 0.00078 2.7E-08 67.3 2.6 72 228-304 210-282 (356)
62 1y42_X Tyrosyl-tRNA synthetase 96.5 0.003 1E-07 63.8 6.6 74 228-304 232-321 (392)
63 2jan_A Tyrosyl-tRNA synthetase 96.5 0.0019 6.4E-08 65.9 4.7 72 228-304 187-260 (432)
64 1h3f_A Tyrosyl-tRNA synthetase 96.5 0.0014 4.8E-08 67.0 3.6 69 228-304 187-257 (432)
65 2ts1_A Tyrosyl-tRNA synthetase 96.4 0.0016 5.5E-08 66.3 3.9 72 228-304 185-258 (419)
66 1jil_A Tyrrs, tyrosyl-tRNA syn 96.4 0.0019 6.5E-08 65.9 4.4 72 228-304 186-259 (420)
67 2yy5_A Tryptophanyl-tRNA synth 95.3 0.0073 2.5E-07 60.0 2.7 77 221-303 140-229 (348)
68 1r6u_A Tryptophanyl-tRNA synth 93.6 0.041 1.4E-06 56.1 3.8 66 230-303 258-327 (437)
69 3sz3_A Tryptophanyl-tRNA synth 93.0 0.033 1.1E-06 55.0 2.0 79 28-119 9-88 (341)
70 3foc_A Tryptophanyl-tRNA synth 91.3 0.087 3E-06 53.8 2.7 78 23-110 89-167 (451)
71 3n9i_A Tryptophanyl-tRNA synth 90.3 0.11 3.6E-06 51.4 2.2 78 28-119 18-97 (346)
72 3foc_A Tryptophanyl-tRNA synth 87.4 1.1 3.7E-05 45.7 7.3 65 231-303 290-358 (451)
73 3n9i_A Tryptophanyl-tRNA synth 86.2 0.87 3E-05 44.9 5.7 78 220-303 144-234 (346)
74 3tzl_A Tryptophanyl-tRNA synth 85.5 0.77 2.6E-05 44.8 4.9 78 29-119 7-85 (322)
75 1y42_X Tyrosyl-tRNA synthetase 85.1 1.5 5.1E-05 44.0 6.9 38 26-67 65-103 (392)
76 1yi8_B Tryptophanyl-tRNA synth 83.6 1.6 5.5E-05 43.1 6.3 74 23-110 21-95 (351)
77 2yy5_A Tryptophanyl-tRNA synth 83.2 1.2 4.3E-05 43.8 5.3 81 27-120 6-87 (348)
78 1r6u_A Tryptophanyl-tRNA synth 81.7 1.9 6.3E-05 43.9 6.0 76 23-110 106-183 (437)
79 2jan_A Tyrosyl-tRNA synthetase 75.4 1.6 5.5E-05 44.3 3.3 39 26-68 33-72 (432)
80 1h3f_A Tyrosyl-tRNA synthetase 74.8 3.2 0.00011 42.1 5.3 39 26-68 38-77 (432)
81 2pid_A Tyrosyl-tRNA synthetase 74.5 1.6 5.5E-05 43.2 3.0 38 26-67 47-85 (356)
82 2ts1_A Tyrosyl-tRNA synthetase 73.9 1.9 6.5E-05 43.6 3.4 38 27-68 32-70 (419)
83 2yxn_A Tyrosyl-tRNA synthetase 72.3 1.8 6.1E-05 42.2 2.6 39 26-68 34-73 (322)
84 3sz3_A Tryptophanyl-tRNA synth 71.4 3.9 0.00013 40.1 4.9 78 220-303 135-228 (341)
85 1jil_A Tyrrs, tyrosyl-tRNA syn 70.9 1.9 6.6E-05 43.6 2.6 78 26-109 33-113 (420)
86 3p0j_A Tyrosyl-tRNA synthetase 53.0 36 0.0012 36.6 8.5 77 34-118 390-467 (690)
87 1p9o_A Phosphopantothenoylcyst 27.1 47 0.0016 31.9 3.9 54 21-74 35-93 (313)
88 2yxb_A Coenzyme B12-dependent 24.1 1.3E+02 0.0045 25.4 6.0 64 47-135 33-98 (161)
89 1ufz_A Hypothetical protein BA 24.0 74 0.0025 24.1 3.6 24 352-375 54-77 (83)
90 2heo_A Z-DNA binding protein 1 22.8 1.6E+02 0.0054 20.8 5.3 20 120-139 39-58 (67)
91 1ccw_A Protein (glutamate muta 21.8 1E+02 0.0036 25.2 4.7 64 47-135 18-83 (137)
92 4amg_A Snogd; transferase, pol 21.8 57 0.0019 31.4 3.5 26 40-68 33-58 (400)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=4.6e-123 Score=959.00 Aligned_cols=452 Identities=50% Similarity=0.885 Sum_probs=361.0
Q ss_pred CcceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHH
Q psy14486 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACA 80 (472)
Q Consensus 1 ~~~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a 80 (472)
|+ |+||||+||+||+|.|.++++|+||+|||||||++||||+|++|++|+++|+||++||+|.||+|+||+|+||+.+|
T Consensus 3 m~-l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A 81 (462)
T 3tqo_A 3 MS-VKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRA 81 (462)
T ss_dssp CC-CEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHH
T ss_pred ce-EEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHH
Confidence 66 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCc
Q psy14486 81 KKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGK 160 (472)
Q Consensus 81 ~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~ 160 (472)
+++|++|++++++|++.|.++|++|||.+|+++|++|+|++.|+++|++|+++|+||+.. +|+||||+++++.||+
T Consensus 82 ~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~----~g~Vyfdv~~~~~yg~ 157 (462)
T 3tqo_A 82 GENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQ----NGDVFFDVRRFKDYGK 157 (462)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECT----TSCEEECTTTCTTTTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEec----CCcEEecccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999874 4899999999999999
Q ss_pred ccCCCccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCc
Q psy14486 161 LSGRLISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239 (472)
Q Consensus 161 l~~~~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~ 239 (472)
||+++++++..| |++...+|++|.||+|||.+++|+|. |+||||.||||||||||||+.++||.++|||+||.||+
T Consensus 158 Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~---W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~ 234 (462)
T 3tqo_A 158 LSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPK---WDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLK 234 (462)
T ss_dssp TTTCSCC------------CCSSTTCEEEEEECCTTSCC---BCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGT
T ss_pred ccCCChHHhhccCccccccccCCccccceeeecCCCCCc---ccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccc
Confidence 999999999999 98888899999999999999999998 99999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHH
Q psy14486 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNY 319 (472)
Q Consensus 240 fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~ 319 (472)
||||+|++||++|++|.||+++|+|+|+|+++|+|||||+||+|+++|++++|+||++|||++++||+++++||++.+++
T Consensus 235 FpHheneiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~ 314 (462)
T 3tqo_A 235 FPHHENEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLEN 314 (462)
T ss_dssp TTHHHHHHHHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHH
T ss_pred cHHHHhHHHHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccccccCcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q psy14486 320 AKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS-------IKMAKQLRGL 392 (472)
Q Consensus 320 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~-------~~~~~~l~~~ 392 (472)
+.+.++|++++++.+....+ +....+.++|.+||+||||||.|++.|+++++.+|+..+ ..++..++.+
T Consensus 315 a~~~l~rl~~~~~~~~~~~~----~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 390 (462)
T 3tqo_A 315 GRLALERFYLALRGLPVVNH----EKTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDNNQIEKAAVLAAELKCL 390 (462)
T ss_dssp HHHHHHHHHHHHTTCCC----------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHH
Confidence 99999999999988753211 112467789999999999999999999999999998764 2345678888
Q ss_pred HhhhcccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHHHHhHhCCcEEEecCCCeeeEEEC
Q psy14486 393 GNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472 (472)
Q Consensus 393 ~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~~Gi~v~D~~~g~t~w~~~ 472 (472)
..+|||+..++..++.. .. ....+++|++||++|++||++|||++||+|||+|.++||.|+|||+| |+|++.
T Consensus 391 ~~vlg~~~~~~~~~~~~-~~------~~~~~~~i~~li~~R~~ar~~kd~~~aD~iR~~L~~~Gi~l~D~~~g-~~w~~~ 462 (462)
T 3tqo_A 391 GNIFGLLQYSPEQFLQG-AK------KEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDG-TSWRQE 462 (462)
T ss_dssp HGGGTCSCSCHHHHC-----------------------------------------------------------------
T ss_pred HHhcCCCccchhhhhhc-cc------cccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEEcCCC-cEEEeC
Confidence 99999987665443321 00 11123679999999999999999999999999999999999999999 999873
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.4e-118 Score=928.91 Aligned_cols=452 Identities=29% Similarity=0.488 Sum_probs=360.6
Q ss_pred CcceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcc--------
Q psy14486 1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDI-------- 72 (472)
Q Consensus 1 ~~~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~-------- 72 (472)
|+ |+||||+||+||+|.|.+ +|+||+|||||||++||||||++|++|+++||||++||+|.||+|+||+
T Consensus 22 m~-l~lyntltr~ke~f~p~~--~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~D 98 (501)
T 3sp1_A 22 MI-LKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLD 98 (501)
T ss_dssp CC-EEEEETTTTEEEEECCCS--CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-----
T ss_pred Ce-EEEEECCCCccccccccC--cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCC
Confidence 55 999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred --cHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEE
Q psy14486 73 --DDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNY 150 (472)
Q Consensus 73 --d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f 150 (472)
|+||+.+|+++|++|++++++|++.|+++|++|||.+|+++|++|+|++.|+++|++|+++|+||++ +|+|||
T Consensus 99 ehddKI~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~-----~g~Vyf 173 (501)
T 3sp1_A 99 DGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFS-----NGNVYF 173 (501)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEE-----TTEEEE
T ss_pred CCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEe-----CCcEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 699999
Q ss_pred ecccccCcCcccCCCc-cccccC-CCCccccccCccccccccc--c-CCCCCccccccCCCccCCCCCcchhhHhhhhhh
Q psy14486 151 SVRNFLNYGKLSGRLI-SSNFNK-INEKNNFKKDPLDFALWKV--S-KNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLL 225 (472)
Q Consensus 151 ~~~~~~~yg~l~~~~~-~~~~~g-~v~~~~~k~~~~df~lwk~--~-~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~ 225 (472)
|+++|+.||+||++++ +++..| +++....|++|.||+|||. . ++|+|. |+||||.||||||||||||+.++|
T Consensus 174 ~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~---W~spwG~GrPGWhiEcsam~~~~l 250 (501)
T 3sp1_A 174 DTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMK---WDSPWGFGYPSWHLECAAMNLEYF 250 (501)
T ss_dssp CGGGCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CC---BCCTTCSEEECHHHHHHHHHHHHT
T ss_pred cCCccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCce---ecCCCCCCCCCchHHHHHHHHHHc
Confidence 9999999999999999 999999 8888888999999999997 3 357787 999999999999999999999999
Q ss_pred CCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhh-CChhhHHHHhhhc
Q psy14486 226 GSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK-YNPEVIRFFILRS 304 (472)
Q Consensus 226 g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~ 304 (472)
|.++|||+||+||+||||+||+||++|++|.||+++|+|+|||+++|+|||||+||+|+++|++++ |+||++||||+++
T Consensus 251 g~~~DIH~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~ 330 (501)
T 3sp1_A 251 KDALDIHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS 330 (501)
T ss_dssp TTCCCEEEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTS
T ss_pred CCCceEEeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred CCCCCcccCHHHHHHHHHH----HHHHHHHHHhcCccccc----cc--c-C-cchhHHHHHHHHHHhccChhHHHHHHHH
Q psy14486 305 HYRSTINYSEIYLNYAKKS----LIRLYLAIKDIPKINYK----KI--I-D-LNEPHAKRFIIAMNDDFNTPVAISILFD 372 (472)
Q Consensus 305 ~~~~~~~fs~~~l~~~~~~----~~r~~~~~~~~~~~~~~----~~--~-~-~~~~~~~~~~~al~dd~n~~~al~~l~~ 372 (472)
||+++++||++.|+++.+. ++|++++++++...... .. . . ....+.++|.+||+||||||.|++.|++
T Consensus 331 ~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~am~dDlnt~~al~~l~~ 410 (501)
T 3sp1_A 331 HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWE 410 (501)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCTTSCSSHHHHHHHHHHHHHHHBTSCHHHHHHHHHH
T ss_pred cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccccccchhhhhHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 9999999999999999999 99999999887432110 00 0 1 1145778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHHHHh
Q psy14486 373 LANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQEL 452 (472)
Q Consensus 373 l~~~~N~~~~~~~~~~l~~~~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L 452 (472)
+++.+|.- ...+...+..++.+|||...++ ....... .....+++|++||++|++||++|||++||+|||+|
T Consensus 411 ~~~~~~~~-~~~~~~~~~~~~~vlGl~~~~~--~~~~~~~-----~~~~~~~~i~~li~~R~~ar~~kd~~~aD~iRd~L 482 (501)
T 3sp1_A 411 IIKSDNLS-FVSKLRLAFIFDEIMSLNLREE--ILKNLQN-----HDVVIDENMKALIEERRIAKCEKNFKRADEIRDFF 482 (501)
T ss_dssp HHHCSSSC-HHHHHHHHHHHHHHHCCCHHHH--HHHHHTT-----SCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccC-HHHHHHHHHHHHHHcCCCcccc--hhhcccc-----cchhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99988721 1234467888899999975431 1111000 01124578999999999999999999999999999
Q ss_pred HhCCcEEEecCCCeeeEEEC
Q psy14486 453 VNNGIILEDMPNGKTEWRRI 472 (472)
Q Consensus 453 ~~~Gi~v~D~~~g~t~w~~~ 472 (472)
.++||.|+|||+| |+|+++
T Consensus 483 ~~~Gi~l~D~~~g-~~w~~~ 501 (501)
T 3sp1_A 483 AKKGFVLVDTKEG-TKVKRG 501 (501)
T ss_dssp HHTTCCCC------------
T ss_pred HHCCcEEEEcCCC-cEEEeC
Confidence 9999999999999 999874
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=7.9e-111 Score=876.42 Aligned_cols=453 Identities=49% Similarity=0.832 Sum_probs=352.0
Q ss_pred eeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHc
Q psy14486 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN 83 (472)
Q Consensus 4 l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~ 83 (472)
|+||||+||+||+|.|.++++|+||+|||||||++||||+|++|++|+++|+||++||+|.|++|+||+|+||+.+|+++
T Consensus 2 l~~ynt~t~~~~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~ 81 (461)
T 1li5_A 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81 (461)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT
T ss_pred cEEEeCCCCCccccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccC
Q psy14486 84 NESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSG 163 (472)
Q Consensus 84 g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~ 163 (472)
|++|++++++|++.|+++|++|||.+|+.++++|+|++.+++++++|+++|++|+.+ +|+||||+++|+.||++|+
T Consensus 82 g~~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~----~g~v~f~~~~~~~yg~lsg 157 (461)
T 1li5_A 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVAD----NGDVMFDVPTDPTYGVLSR 157 (461)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECT----TSCEEECGGGCTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEec----CCCEEEecccccccccccC
Confidence 999999999999999999999999997777999999999999999999999999873 4899999999999999999
Q ss_pred CCccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCch
Q psy14486 164 RLISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242 (472)
Q Consensus 164 ~~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH 242 (472)
+.++++.+| +++....|++|.||++||..++|+|. |++|||.|||||||||++|+.++||.++|||++|+||+|||
T Consensus 158 ~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~---w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH 234 (461)
T 1li5_A 158 QDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPS---WPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPH 234 (461)
T ss_dssp C----------------CCSTTCEEEEEECCTTSCC---BCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTH
T ss_pred CCHHHhhcCCcccchhcccCccceEEEccCCCCCCc---ccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchH
Confidence 999999888 88887889999999999998899998 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHHHHH
Q psy14486 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKK 322 (472)
Q Consensus 243 ~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~ 322 (472)
|+|++||++|+.|.|++++|+|+|||+++|+|||||+||+|+++|++++|++|++|||++++||+++++||++.+.++.+
T Consensus 235 ~~~~~aq~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~ 314 (461)
T 1li5_A 235 HENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARA 314 (461)
T ss_dssp HHHHHHHHHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccccccCcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhh
Q psy14486 323 SLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSI------KMAKQLRGLGNWL 396 (472)
Q Consensus 323 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~~------~~~~~l~~~~~il 396 (472)
.++|++++++++....+. +....+.+.|.++|+||||++.|++.|+++++.+|+|++. .+...|+.++.+|
T Consensus 315 ~l~rl~n~~~~~~~~~~~---d~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~~~~~~~~~~~~~~~~~~~l 391 (461)
T 1li5_A 315 ALERLYTALRGTDKTVAP---AGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVL 391 (461)
T ss_dssp HHHHHHHHHTTCCTTSCC---CSCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Confidence 999999999877431111 1235678899999999999999999999999999999751 1235677788999
Q ss_pred cccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHHHHhHhCCcEEEecCCCeeeEEEC
Q psy14486 397 GLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472 (472)
Q Consensus 397 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~~Gi~v~D~~~g~t~w~~~ 472 (472)
||+..++..++..+.. ..+...++|++||++|++||++|||++||+|||+|.++||.|+|||+| |+|+++
T Consensus 392 G~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~r~~ar~~k~~~~aD~iR~~l~~~gi~~~d~~~g-~~w~~~ 461 (461)
T 1li5_A 392 GLLEQEPEAFLQSGAQ-----ADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQG-TTWRRK 461 (461)
T ss_dssp TCSCSCHHHHC-----------------------------------------------------------------
T ss_pred CCCccChhhhhhcccc-----cccccHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEEcCCC-cEEEeC
Confidence 9965444332211000 000001468999999999999999999999999999999999999999 999863
No 4
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1e-87 Score=695.17 Aligned_cols=384 Identities=32% Similarity=0.500 Sum_probs=335.8
Q ss_pred cceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHH
Q psy14486 2 STLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAK 81 (472)
Q Consensus 2 ~~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~ 81 (472)
.+|+||||+|+++++|.| ++++++|+|||||||++||||+|++|++|+++|+||++||+|.|++|+||+|+||+.+|+
T Consensus 19 ~~~~lynt~~~~~~~f~p--~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~ 96 (414)
T 3c8z_A 19 PALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAE 96 (414)
T ss_dssp CCCEEEETTTTEEEECCC--CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHH
T ss_pred CCcEEEeeccCCcccccC--CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHH
Confidence 359999999999999999 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcc
Q psy14486 82 KNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKL 161 (472)
Q Consensus 82 ~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l 161 (472)
++|+++++++++|.+.|+++|++|||..++.++++|+|++.+++++++|+++|++|++.++ .++++||++++|+.||++
T Consensus 97 ~~g~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~-~e~~~~f~~~~~~~~g~l 175 (414)
T 3c8z_A 97 RDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDA-EYPDVYFRADATAQFGYE 175 (414)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCS-SCCCEEECTTSSTTTTTT
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCC-cCCCEEEEchhhhhhHhh
Confidence 9999999999999999999999999993344589999999999999999999999987210 018999999999999999
Q ss_pred cCCCccccccC---C-CCc-cccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeecc
Q psy14486 162 SGRLISSNFNK---I-NEK-NNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQ 236 (472)
Q Consensus 162 ~~~~~~~~~~g---~-v~~-~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~ 236 (472)
++.+.+++..+ + ++. .+.|++|.||++||..++|++. |++|||.|+|||||||++|+.++||.++|+|++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~---Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~ 252 (414)
T 3c8z_A 176 SGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPS---WPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGS 252 (414)
T ss_dssp TCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCC---BCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEG
T ss_pred cCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCC---CCCCCCCCCCCccchhHHHHHHhcCCCceEEEecc
Confidence 98877766543 2 333 4458899999999998899998 99999999999999999999999999999999999
Q ss_pred CCcCchhHHHHHHHhhccCC-CCceEEEeeeeEEecCccccccCCCccCHHHHHhh-CChhhHHHHhhhcCCCCCcccCH
Q psy14486 237 DLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK-YNPEVIRFFILRSHYRSTINYSE 314 (472)
Q Consensus 237 Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~-~~~d~lR~~ll~~~~~~~~~fs~ 314 (472)
||+||||+|++||++|++|. |++++|+|+|||+++|+|||||+||+|+++|++++ |++|++|||+++++++++++||+
T Consensus 253 D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~ 332 (414)
T 3c8z_A 253 DLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSN 332 (414)
T ss_dssp GGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCH
T ss_pred ccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCCCcCH
Confidence 99999999999999999876 88899999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q psy14486 315 IYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS----IKMAKQLR 390 (472)
Q Consensus 315 ~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~----~~~~~~l~ 390 (472)
+.+.++.+.++|++++++++.. + ...++.++|.++|+||||+++|++.|+++++.+|+ -. .+....++
T Consensus 333 ~~l~~~~~~l~~l~n~~~~~~~--~-----~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~-~~~~~~~~~~~~~~ 404 (414)
T 3c8z_A 333 EVLDEANARLARWRSATALPEA--P-----DATDVIARVRQYLADDLDTPKALAALDGWCTDALS-YGGHDTESPRLVAT 404 (414)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCB--S-----CCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH-HCCSBSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc--h-----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-ccCCChhhHHHHHH
Confidence 9999999999999999987632 1 12567889999998899999999999999999998 21 23446788
Q ss_pred HHHhhhccc
Q psy14486 391 GLGNWLGLL 399 (472)
Q Consensus 391 ~~~~ilGi~ 399 (472)
.+..||||.
T Consensus 405 ~~d~vLg~~ 413 (414)
T 3c8z_A 405 TVDALLGVD 413 (414)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHhCCC
Confidence 888999984
No 5
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=4.7e-60 Score=501.03 Aligned_cols=347 Identities=22% Similarity=0.238 Sum_probs=270.0
Q ss_pred ceEEEEcCCCCC--CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy14486 24 KVSLYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQED 101 (472)
Q Consensus 24 ~v~~y~cgPt~~--g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 101 (472)
+.++|+|+|+|| |++||||+|+++++|+++|++|++||+|.+++|+|+||+||+.+|+++|+++++++++|.+.|.++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 83 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKL 83 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 347999999988 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCccccCCC--cHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc--ccCcCcc--------cCCCcccc
Q psy14486 102 SLLLHIQPPDYQPCATN--YIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN--FLNYGKL--------SGRLISSN 169 (472)
Q Consensus 102 l~~LgI~~d~~~~r~s~--~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~--~~~yg~l--------~~~~~~~~ 169 (472)
+++|||++|.+ +++++ |++.+++++++|+++|++|++. ..++||+.+ +..++.+ |+..++.+
T Consensus 84 ~~~lgi~~d~~-~~t~~~~~~~~~~~~~~~L~~~G~iY~~~-----~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 157 (497)
T 2csx_A 84 WEFLKIEYTKF-IRTTDPYHVKFVQKVFEECYKRGDIYLGE-----YEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYI 157 (497)
T ss_dssp HHHTTCCCSEE-EETTSHHHHHHHHHHHHHHHHTTCEEEEE-----C---------------------------------
T ss_pred HHHhCCcCCCC-ccCCCHHHHHHHHHHHHHHHHCCCEEecc-----eeeccCcccCeEccHHHhccCCCCCCCCCCCeEE
Confidence 99999999865 67887 9999999999999999999873 456777654 2223333 33333322
Q ss_pred ccC--CCCcccc--------ccCccccc----------cccccCCCCCcccc--ccCCCccCCC---CCcch--------
Q psy14486 170 FNK--INEKNNF--------KKDPLDFA----------LWKVSKNNDPYEIR--WNSKWGAGRP---GWHIE-------- 216 (472)
Q Consensus 170 ~~g--~v~~~~~--------k~~~~df~----------lwk~~~~g~~~~~~--w~~~wG~g~P---gWhie-------- 216 (472)
..+ .+....+ +.+| ++. -|......+.++++ |+++||.++| +||++
T Consensus 158 ~~~~wf~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~ 236 (497)
T 2csx_A 158 KEPSYFFRLSKYQDKLLELYEKNP-EFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFN 236 (497)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHCT-TSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTH
T ss_pred ecCceEEEcHHHHHHHHHHHHhCC-CeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchh
Confidence 221 1111111 0111 111 12111123444665 8999999999 79997
Q ss_pred -hhHhhh---hhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhC
Q psy14486 217 -CSAMSC---YLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKY 292 (472)
Q Consensus 217 -csam~~---~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~ 292 (472)
|++|.. .++ ++|+|++|+|++||||++++||++++ |.++++.|+|+|||+++|+|||||+||+|+|.|++++|
T Consensus 237 ~~s~~~~~~~~~~--p~di~~~G~D~~~~H~~~~~a~l~~~-g~~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~~ 313 (497)
T 2csx_A 237 YISALEDKVEIYW--PADLHLVGKDILRFHTVYWPAFLMSL-GYELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEY 313 (497)
T ss_dssp HHHTTTTTHHHHC--SCSCEEEEGGGHHHHHTHHHHHHHHH-TCCCCSCEEEECCEESSSSBCCTTTTCCCCHHHHHHHH
T ss_pred hcccCCCcchhhC--CceEEEeecchhHhHHHHHHHHHHHc-CCCCCcEEEECcEEEeCCceeCCcCCCCCCHHHHHHHC
Confidence 888866 566 78999999999999999999999887 77788888999999999999999999999999999999
Q ss_pred ChhhHHHHhhh-cCCCCCcccCHHHHHHHHH---------HHHHHHHHHHhcCc-cccccccCc-----chhHHHHHHHH
Q psy14486 293 NPEVIRFFILR-SHYRSTINYSEIYLNYAKK---------SLIRLYLAIKDIPK-INYKKIIDL-----NEPHAKRFIIA 356 (472)
Q Consensus 293 ~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~---------~~~r~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~a 356 (472)
|+|++|||+++ ++++++++||++.+.++.+ .++|+.+++.+... ..+ ...+. ...+.+.+.++
T Consensus 314 g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~-~~~d~~l~~~l~~~~~~v~~~ 392 (497)
T 2csx_A 314 GLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVS-GARDEEYAKIAQESIKNYENY 392 (497)
T ss_dssp CHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBC-CCCCTTHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHHHHHHH
Confidence 99999999998 6999999999999998765 36787777765421 111 11121 15678899999
Q ss_pred HHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 357 MNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 357 l~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
| ++++++.|++.|+++++.+|+|++
T Consensus 393 ~-~~~~~~~a~~~l~~l~~~~n~y~~ 417 (497)
T 2csx_A 393 M-EKVNFYKAIEEILKFTSYLNKYVD 417 (497)
T ss_dssp H-TTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HccCHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999976
No 6
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=3.2e-58 Score=487.51 Aligned_cols=344 Identities=20% Similarity=0.222 Sum_probs=275.5
Q ss_pred EEEEcCCCCC--CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 26 SLYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 26 ~~y~cgPt~~--g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
++|+|+|+|| |++||||+|+++++|+++|++|++||+|.+++|+|++|+||+.+|+++|+++.+++++|.+.|.++|+
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 6899999986 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccccCCC--cHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--cCcCcc-------cCCCccccccC
Q psy14486 104 LLHIQPPDYQPCATN--YIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--LNYGKL-------SGRLISSNFNK 172 (472)
Q Consensus 104 ~LgI~~d~~~~r~s~--~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--~~yg~l-------~~~~~~~~~~g 172 (472)
+|||.+|.+ +++++ |.+.+++++++|+++|++|++ +..++||+.+. ..++.+ |+..++.+..+
T Consensus 84 ~lgi~~d~~-~~t~~~~~~~~~~~~~~~L~~~G~iy~~-----~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~ 157 (500)
T 2d5b_A 84 LLGIAYDDF-IRTTEERHKKVVQLVLKKVYEAGDIYYG-----EYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEG 157 (500)
T ss_dssp HTTCCCSEE-EETTSHHHHHHHHHHHHHHHHTTCEEEE-----EEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEE
T ss_pred HhCCcCCCC-cccCCHHHHHHHHHHHHHHHHCCCEEec-----ceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecC
Confidence 999999865 67887 999999999999999999987 35678877652 233333 33333322211
Q ss_pred --CCCccc--------cccCcccccccccc--------CCC--CCcccc--ccCCCccCCC-------------------
Q psy14486 173 --INEKNN--------FKKDPLDFALWKVS--------KNN--DPYEIR--WNSKWGAGRP------------------- 211 (472)
Q Consensus 173 --~v~~~~--------~k~~~~df~lwk~~--------~~g--~~~~~~--w~~~wG~g~P------------------- 211 (472)
.+.... .++++ +|..++.. +.| +.++++ |+.+||.++|
T Consensus 158 ~wf~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~ 236 (500)
T 2d5b_A 158 NYFFRMEKYRPWLQEYIQENP-DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVS 236 (500)
T ss_dssp EEEECGGGGHHHHHHHHHTCT-TSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHH
T ss_pred ceEEEcHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHH
Confidence 111111 12222 44433211 133 434665 6889999999
Q ss_pred --CCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEe-cCccccccCCCccCHHHH
Q psy14486 212 --GWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKI-NNKKMSKSFGNFCTIRDL 288 (472)
Q Consensus 212 --gWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~-~G~KMSKS~Gn~i~~~dl 288 (472)
|||++|+ ..+++ +.|+|++|+|++||||++++|+++++ |.++++.|+|+|||+. +|+|||||+||+|+|.|+
T Consensus 237 ~~g~~~~~~--~~~~~--p~di~~~G~D~~~fh~~~~~a~~~~~-g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~ 311 (500)
T 2d5b_A 237 ALDYPEGEA--YRTFW--PHAWHLIGKDILKPHAVFWPTMLKAA-GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFAL 311 (500)
T ss_dssp TTTTTTCHH--HHHHG--GGEEEEEEGGGHHHHHTHHHHHHHHH-TCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHH
T ss_pred HcCCCCCch--HHHcC--CCeEEEEeechhhhHHHHHHHHHHHc-CCCCCcEEEECceEEeCCCCcccccCCCCCCHHHH
Confidence 8999987 45556 56999999999999999999999887 7778888999999999 999999999999999999
Q ss_pred HhhCChhhHHHHhhh-cCCCCCcccCHHHHHHHHH---------HHHHHHHHHHhc-Cccccc---cc-cCcchhHHHHH
Q psy14486 289 LKKYNPEVIRFFILR-SHYRSTINYSEIYLNYAKK---------SLIRLYLAIKDI-PKINYK---KI-IDLNEPHAKRF 353 (472)
Q Consensus 289 l~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~---------~~~r~~~~~~~~-~~~~~~---~~-~~~~~~~~~~~ 353 (472)
+++||+|++|||+++ ++++++++||++.+.++.+ .+.|+..++.+. .+..+. .+ ......+.+++
T Consensus 312 i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v 391 (500)
T 2d5b_A 312 LEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRL 391 (500)
T ss_dssp HHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGGGGGGGGHHHHH
T ss_pred HHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999 6999999999999988764 234544444332 111111 11 11126788999
Q ss_pred HHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 354 IIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 354 ~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.++| ++++++.|++.|+++++.+|+|++
T Consensus 392 ~~a~-~~~~~~~a~~~l~~l~~~~n~y~~ 419 (500)
T 2d5b_A 392 RPLV-RELKFHVALEEAMAYVKALNRYIN 419 (500)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999986
No 7
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1e-55 Score=484.28 Aligned_cols=350 Identities=15% Similarity=0.082 Sum_probs=272.1
Q ss_pred eEEEEcCCCCCCcCCcccchH-HHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 25 VSLYVCGITAYDYCHLGHARL-MIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 25 v~~y~cgPt~~g~lHiGhar~-~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
+-|.++.|+|||++||||+++ ++++|+++||+|++||+|.|++|+|+||+||+.+|+++|++|++++++|.+.|+++++
T Consensus 4 ~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~ 83 (722)
T 1rqg_A 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQ 83 (722)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 445566788889999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc------------cC------cCccc-
Q psy14486 104 LLHIQPPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF------------LN------YGKLS- 162 (472)
Q Consensus 104 ~LgI~~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~------------~~------yg~l~- 162 (472)
+|||++|.+ .+++ +|.+.++++|++|+++|++|++ +..+|||+.+. |. ||.+|
T Consensus 84 ~lgis~D~~-~rT~d~~~~~~v~~~f~~L~~kG~iY~~-----~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~ 157 (722)
T 1rqg_A 84 RAKISFDFF-GRTELPIHYKLSQEFFLKAYENGHLVKK-----VTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCE 157 (722)
T ss_dssp HHTCCCSEE-EETTSHHHHHHHHHHHHHHHHTTCEEEE-----EEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCS
T ss_pred HhCCCCCCC-eeCCCHHHHHHHHHHHHHHHHCCCEEec-----ceeeeecCCCCcCcchhhcccccCccCCccCCcchhh
Confidence 999999986 6777 4899999999999999999998 47899999863 33 33332
Q ss_pred --CCCc--cccc------cC-CCCc----------cccccCccccc---ccccc---------CCCCCc--cccccCCCc
Q psy14486 163 --GRLI--SSNF------NK-INEK----------NNFKKDPLDFA---LWKVS---------KNNDPY--EIRWNSKWG 207 (472)
Q Consensus 163 --~~~~--~~~~------~g-~v~~----------~~~k~~~~df~---lwk~~---------~~g~~~--~~~w~~~wG 207 (472)
+..+ .++. +| .++. ..++....++. .|... +.|.+. ++ ++.+||
T Consensus 158 ~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~IS-R~~~WG 236 (722)
T 1rqg_A 158 VCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAIT-RDLNWG 236 (722)
T ss_dssp SSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECE-ECCSSS
T ss_pred hcccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCccccee-ccccCc
Confidence 2211 1222 22 2211 11111111111 14322 355554 22 388999
Q ss_pred cCCC----CCc-----------chhhHhhh-------------hhhC--C--CceEeeeccCCcCchhHHHHHHHhhcc-
Q psy14486 208 AGRP----GWH-----------IECSAMSC-------------YLLG--S--HFDIHGGGQDLKFPHHENEIAQSEGAY- 254 (472)
Q Consensus 208 ~g~P----gWh-----------iecsam~~-------------~~~g--~--~~dih~~G~Dl~fpH~~~~~a~~~a~~- 254 (472)
.++| ||+ ++|.+++. .+|+ . ..++|++|+|++|||..+|||+++++.
T Consensus 237 ~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~ 316 (722)
T 1rqg_A 237 IPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGK 316 (722)
T ss_dssp CBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCC
T ss_pred cccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCC
Confidence 9999 576 55554432 3554 3 245999999999999999999999875
Q ss_pred --------CCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHH---
Q psy14486 255 --------KHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKK--- 322 (472)
Q Consensus 255 --------g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~--- 322 (472)
|.++|+.|+|||||+.+|+|||||+||+|+|.|++++||+|++||||++. +++++++||++.+.+..|
T Consensus 317 ~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l 396 (722)
T 1rqg_A 317 YKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 396 (722)
T ss_dssp BCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTT
T ss_pred CcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999997 999999999999988654
Q ss_pred ------HHHHHHHHHHhc-Ccccccc-c---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 323 ------SLIRLYLAIKDI-PKINYKK-I---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 323 ------~~~r~~~~~~~~-~~~~~~~-~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.++|+.+++.+. .+..+.. . .+. ...+..++.++| ++|+++.|++.|++|++.+|+|++
T Consensus 397 ~~~l~N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~~A~~~i~~~~~~~n~Yi~ 471 (722)
T 1rqg_A 397 VNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKRVMSLASFGNRYFD 471 (722)
T ss_dssp TTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345555555432 2221210 0 111 146678899999 899999999999999999999986
No 8
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1e-55 Score=470.73 Aligned_cols=345 Identities=19% Similarity=0.188 Sum_probs=263.5
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
.+-+.++.|+|+|++||||+|+++++|+++|++|++||+|.+++|+|++|+||+.+|+++|+++++++++|.+.|+++++
T Consensus 13 ~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 92 (524)
T 2x1l_A 13 PFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQE 92 (524)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44455556777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccccCCC--cHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc--ccCcCc------------ccCCCcc
Q psy14486 104 LLHIQPPDYQPCATN--YIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN--FLNYGK------------LSGRLIS 167 (472)
Q Consensus 104 ~LgI~~d~~~~r~s~--~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~--~~~yg~------------l~~~~~~ 167 (472)
+|||.+|.+ .++++ |++.+++++++|+++|++|++ ++.||||+.+ +..++. .|+..++
T Consensus 93 ~lgi~~d~~-~~t~~~~~~~~v~~~~~~L~~~G~iY~~-----~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~ 166 (524)
T 2x1l_A 93 KLNISFDRF-IRTSDADHYEASKAIWKRMADAGDIYLD-----AYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVT 166 (524)
T ss_dssp HTTCCCSEE-EETTSHHHHHHHHHHHHHHHHTTCEEEE-----EEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEE
T ss_pred HcCCcCCCC-eecCCHHHHHHHHHHHHHHHHCCCEEee-----eeeeeccCccCccccHHHhccCCCCCccccccCCcce
Confidence 999999865 68887 999999999999999999998 5899999987 433332 3443332
Q ss_pred ccccC----------------------CCCccccccCccccccccccCCCCCccccccCCCccCCCC--------Cc---
Q psy14486 168 SNFNK----------------------INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPG--------WH--- 214 (472)
Q Consensus 168 ~~~~g----------------------~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~Pg--------Wh--- 214 (472)
..... .+.+...|+.+.+|.+ ....+.++++-..+||.++|+ |+
T Consensus 167 ~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~---~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~ 243 (524)
T 2x1l_A 167 WTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVS---GGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDAL 243 (524)
T ss_dssp EEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHT---TCCCCEECEESSCCSSCEETTEEEEEECHHHHHH
T ss_pred EEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHH---cCCcccceECCCCCcCccCCCCCCCEEEEecCCc
Confidence 21110 0111111111222221 001122233212468877772 21
Q ss_pred ----------chhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCc-eEEEeeeeEEecCccccccCCCcc
Q psy14486 215 ----------IECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFV-NYWMHSGFVKINNKKMSKSFGNFC 283 (472)
Q Consensus 215 ----------iecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~-~~~~h~g~l~~~G~KMSKS~Gn~i 283 (472)
-+|+++..+++ +.|+|++|+|++||||++|+|+++++ |.+++ ++|+| |||+.+|+|||||+||+|
T Consensus 244 ~~~~~~~g~p~~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~l~~~-g~~~~~~v~~h-G~v~~~G~KMSKS~GN~v 319 (524)
T 2x1l_A 244 TNYLTGVGFPDTESESFRRYW--PADLHMIGKDIIRFHTVYWPAFLMSA-GLPLPKRIFAH-GWLLNRGEKMSKSIGNVV 319 (524)
T ss_dssp THHHHTTTTTCTTSHHHHHHC--SCSEEEEEGGGHHHHHTHHHHHHHHH-TCCCCSCEEEE-CCEEECSCSEETTTEESS
T ss_pred hHHHHHcCCCCCchHHHHhhC--CCeEEEEeechhHhHHHHHHHHHHHC-CCCCCcEEEEC-cEEEeCCcccCCcCCCCC
Confidence 13444555555 68999999999999999999999887 55555 55555 999999999999999999
Q ss_pred CHHHHHhhCChhhHHHHhhh-cCCCCCcccCHHHHHHHHH---------HHHHHHHHHHhc-Ccccccc-c---cCc---
Q psy14486 284 TIRDLLKKYNPEVIRFFILR-SHYRSTINYSEIYLNYAKK---------SLIRLYLAIKDI-PKINYKK-I---IDL--- 345 (472)
Q Consensus 284 ~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~---------~~~r~~~~~~~~-~~~~~~~-~---~~~--- 345 (472)
+|.|++++||+|++|||+++ ++++++++||++.+.++.+ .++|+.+++.+. .+..+.. . .+.
T Consensus 320 ~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~ 399 (524)
T 2x1l_A 320 DPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALL 399 (524)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHH
T ss_pred CHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHH
Confidence 99999999999999999999 6999999999999998875 345555555432 2211110 0 111
Q ss_pred --chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 346 --NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 346 --~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
...+.+.+.++| ++|+++.|++.|+++++.+|+|++
T Consensus 400 ~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~y~~ 437 (524)
T 2x1l_A 400 AAADALLERVREHF-DVPAMHLALEAIWSVLGAANRYFS 437 (524)
T ss_dssp HHHHTHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHH
Confidence 146778999999 999999999999999999999976
No 9
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=7.8e-56 Score=473.67 Aligned_cols=348 Identities=17% Similarity=0.133 Sum_probs=264.2
Q ss_pred EEEEcCC--CCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 26 SLYVCGI--TAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 26 ~~y~cgP--t~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
++|+|+| .|+|.+|||||++++++|+++||+|++||+|.|++|+||||.||+.+|+++|+++++++++|++.|+++++
T Consensus 10 ~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~ 89 (542)
T 3u1f_A 10 VFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFE 89 (542)
T ss_dssp CEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4566655 55599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc------------cCcCcccC------
Q psy14486 104 LLHIQPPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF------------LNYGKLSG------ 163 (472)
Q Consensus 104 ~LgI~~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~------------~~yg~l~~------ 163 (472)
+|||++|.+ .+++ +|.+.++++|.+|+++|++|++ ...|+||+.+. +.||..+.
T Consensus 90 ~lgi~~D~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~~-----~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg 163 (542)
T 3u1f_A 90 QMDYSIDYF-IRTTNEQHKAVVKELWTKLEQKGDIYLG-----RYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESG 163 (542)
T ss_dssp HHTCCCSEE-EETTCHHHHHHHHHHHHHHHHTTCEEEE-----EEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTC
T ss_pred HhCCccCcC-ccCCCHHHHHHHHHHHHHHhhcCcEEec-----ceeEEeeccCcccchhhhhhccccccCccccccCCCC
Confidence 999999886 5665 6899999999999999999998 58899999762 33444321
Q ss_pred CCccccccC--CCCcccc--------ccCcccccccccc--------CCC--CCccc---cccCCCccCCCC--------
Q psy14486 164 RLISSNFNK--INEKNNF--------KKDPLDFALWKVS--------KNN--DPYEI---RWNSKWGAGRPG-------- 212 (472)
Q Consensus 164 ~~~~~~~~g--~v~~~~~--------k~~~~df~lwk~~--------~~g--~~~~~---~w~~~wG~g~Pg-------- 212 (472)
..++..... .+..... +.++ ++..|+.. +.+ +-+++ .|...||+++|+
T Consensus 164 ~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~v 242 (542)
T 3u1f_A 164 HVVTWVSEENYMFRLSAFRERLLEWYHANP-GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYV 242 (542)
T ss_dssp CBEEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECH
T ss_pred CcceeeccccceecchhHHHHHHHHHhhcc-cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeee
Confidence 111111000 0001000 0111 12111110 112 22222 155679999997
Q ss_pred Ccc------hhhHhh--------------hhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecC
Q psy14486 213 WHI------ECSAMS--------------CYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINN 272 (472)
Q Consensus 213 Whi------ecsam~--------------~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G 272 (472)
|+- .|+.+. .....++.|+|++|+|++|||+.+++|++++. |.++++.++|+|||+.+|
T Consensus 243 w~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~-g~~~~~~v~~hg~l~~~G 321 (542)
T 3u1f_A 243 WLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSA-GLPLPKKIVAHGWWTKDR 321 (542)
T ss_dssp HHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHH-TCCCCSCEEEECCCEETT
T ss_pred eeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhh-cccccceeccccceecCC
Confidence 421 111111 11223478999999999999999999998886 788899999999999999
Q ss_pred ccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHH--HHHHHHHHHhcCc-------cccccc
Q psy14486 273 KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKS--LIRLYLAIKDIPK-------INYKKI 342 (472)
Q Consensus 273 ~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~--~~r~~~~~~~~~~-------~~~~~~ 342 (472)
+|||||+||+|+|.|++++||+|++|||+++. +++++++||++.+.+..+. .+++.|++.++.. ..+...
T Consensus 322 ~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~ 401 (542)
T 3u1f_A 322 KKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPA 401 (542)
T ss_dssp BCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCC
T ss_pred ceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccc
Confidence 99999999999999999999999999999985 8999999999999988763 5666666655321 111110
Q ss_pred ----cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 343 ----IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 343 ----~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.|. ...+..++.++| +++++++|++.|+++++.+|+|++
T Consensus 402 ~~~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~n~Y~~ 449 (542)
T 3u1f_A 402 AYTEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIAVFDVLRAINAYVT 449 (542)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 146678899999 899999999999999999999986
No 10
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=1.9e-53 Score=453.89 Aligned_cols=358 Identities=22% Similarity=0.257 Sum_probs=252.9
Q ss_pred cccccccCCCCceEEEEcCCCCC--CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHH
Q psy14486 13 KKQIFYPITPGKVSLYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTL 90 (472)
Q Consensus 13 ~~~~~~p~~~~~v~~y~cgPt~~--g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~ 90 (472)
+.+|+.|..-++-++|+|+|+|| |++||||+|++|++|+++|++|++||+|.+++|+||+|+||+.+|+++|++++++
T Consensus 13 ~~~~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~ 92 (536)
T 4dlp_A 13 EAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDL 92 (536)
T ss_dssp -----------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHH
T ss_pred cccccCCCcCCCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHH
Confidence 44566665544568999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccccCCC--cHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCc----------
Q psy14486 91 TSRFIKAAQEDSLLLHIQPPDYQPCATN--YIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNY---------- 158 (472)
Q Consensus 91 ~~~~~~~~~~~l~~LgI~~d~~~~r~s~--~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~y---------- 158 (472)
+++|.+.|+++|++|||++|.+ .++++ |.+.+++++++|.++|++|++ ++.+|||+.+...+
T Consensus 93 ~~~~~~~~~~~l~~lgi~~d~~-~~t~~~~~~~~v~~~~~~L~~~G~iY~~-----~~~~~~~~~~~~~l~~~~~~~~~~ 166 (536)
T 4dlp_A 93 ADRNTSAFRRMAEVLNSSNDDY-IRTSEERHYKASQAIWQAMVANGDIYKG-----GYAGWYSVRDEAYYGEEETEVRAD 166 (536)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEE-EETTSHHHHHHHHHHHHHHHHTTCEEEE-----EEEEEEETTTTEEECGGGCEECTT
T ss_pred HHHHHHHHHHHHHHcCCCCCcc-eeCCCHHHHHHHHHHHHHHHHCCCEEEe-----ceeeeecCCcCcccCHHHhhcCCC
Confidence 9999999999999999999976 57775 999999999999999999998 58899999874321
Q ss_pred Cc---ccCCCccccccC--CCCcccc--------ccCccccc----------cccccCCCCCccccccCCCccCCCC---
Q psy14486 159 GK---LSGRLISSNFNK--INEKNNF--------KKDPLDFA----------LWKVSKNNDPYEIRWNSKWGAGRPG--- 212 (472)
Q Consensus 159 g~---l~~~~~~~~~~g--~v~~~~~--------k~~~~df~----------lwk~~~~g~~~~~~w~~~wG~g~Pg--- 212 (472)
|. .|+..++..... -+..... +.++ +|. .|-.....+.++++-+.+||+++|+
T Consensus 167 g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~ 245 (536)
T 4dlp_A 167 GVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNP-GFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEK 245 (536)
T ss_dssp SCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTT
T ss_pred CCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCC
Confidence 21 122222111100 0011100 1111 111 1221111222344224579999996
Q ss_pred -----CcchhhHhhhhh-------------hCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEecCcc
Q psy14486 213 -----WHIECSAMSCYL-------------LGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKK 274 (472)
Q Consensus 213 -----Whiecsam~~~~-------------~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~K 274 (472)
|+- |.+.++ -+++.|+|+.|+|+++||+.+++|++.++ |.++++.++.+|||+.+|+|
T Consensus 246 ~v~yvWfd---a~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~-g~~~~~~v~~hg~v~~~G~K 321 (536)
T 4dlp_A 246 HVMYVWVD---ALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSA-QLPLPKRVFAHGFLFNRGEK 321 (536)
T ss_dssp SEECHHHH---HHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHT-TCCCCSCEEEECCEEC----
T ss_pred CceEEeeC---CcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHC-CCCCCcEEEeeeeEeeCCce
Confidence 332 111110 12377999999999999999999998886 56666666777999999999
Q ss_pred ccccCCCccCHHHHHhhCChhhHHHHhhh-cCCCCCcccCHHHHHHHHH---------HHHHHHHHHHhc-Cccccccc-
Q psy14486 275 MSKSFGNFCTIRDLLKKYNPEVIRFFILR-SHYRSTINYSEIYLNYAKK---------SLIRLYLAIKDI-PKINYKKI- 342 (472)
Q Consensus 275 MSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~---------~~~r~~~~~~~~-~~~~~~~~- 342 (472)
||||+||+|+|.|++++||+|++|||+++ .++.++++||++.+.+..+ .++|+.+++.+. .+..+...
T Consensus 322 MSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~ 401 (536)
T 4dlp_A 322 MSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGA 401 (536)
T ss_dssp --------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCC
T ss_pred ecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Confidence 99999999999999999999999999999 5999999999999987654 355665555432 22222110
Q ss_pred ---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 343 ---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 343 ---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.+. ...+.+.+.++| +++++++|+..|+++++.+|+|++
T Consensus 402 ~~~~d~~ll~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~Y~~ 448 (536)
T 4dlp_A 402 FSEADKAILDQADAALETARKAM-DDQALHLALGAIFAVVAEANRYFA 448 (536)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHH
Confidence 111 156788899999 899999999999999999999986
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=5e-54 Score=460.16 Aligned_cols=362 Identities=17% Similarity=0.143 Sum_probs=267.5
Q ss_pred CcccccccCCCC-ceEEEEcCCCCC--CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHH
Q psy14486 12 RKKQIFYPITPG-KVSLYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIK 88 (472)
Q Consensus 12 ~~~~~~~p~~~~-~v~~y~cgPt~~--g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~ 88 (472)
-+-++|.|..++ +-++|+|+|+|| |++||||+|++|++|+++|++|++||+|.+++|+||+|+||+.+|+++|++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~ 91 (564)
T 3kfl_A 12 LEAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPM 91 (564)
T ss_dssp ------------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHH
T ss_pred hhhhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHH
Confidence 345678776643 568999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccccc----------
Q psy14486 89 TLTSRFIKAAQEDSLLLHIQPPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFL---------- 156 (472)
Q Consensus 89 ~~~~~~~~~~~~~l~~LgI~~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~---------- 156 (472)
+++++|.+.|++++++|||++|.+ .+++ +|.+.+++++++|.++|++|++ ++.+|||+.|..
T Consensus 92 ~~~~~~~~~~~~~~~~lgi~~D~~-~~t~~~~~~~~v~~~~~~L~~~G~iy~~-----~~~~~y~~~~~~~l~~~~~~~~ 165 (564)
T 3kfl_A 92 DFTTSVSSEFKQCFQEMNYDMNYF-IRTTNPTHEKLVQDIWKKLAAKGDIYLG-----KYEGWYSVSDESFLTAQNVADG 165 (564)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEE-EETTSHHHHHHHHHHHHHHHHHTCEEEE-----EEEEEEETTTTEEECGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcc-ccCCCHHHHHHHHHHHHHHHHCCCEEEe-----eeeEEecCCcCCCCCHHHhccC
Confidence 999999999999999999999976 5777 5999999999999999999998 578999998742
Q ss_pred --CcCccc------CCCccccccC--CCCcccc--------ccCccccc----------cccccCCCCCcccc---ccCC
Q psy14486 157 --NYGKLS------GRLISSNFNK--INEKNNF--------KKDPLDFA----------LWKVSKNNDPYEIR---WNSK 205 (472)
Q Consensus 157 --~yg~l~------~~~~~~~~~g--~v~~~~~--------k~~~~df~----------lwk~~~~g~~~~~~---w~~~ 205 (472)
.+|..| +..++..... .+....+ +.++ +|. -|-.....+.++++ -+..
T Consensus 166 ~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~ 244 (564)
T 3kfl_A 166 VDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHP-NCIVPEFRRREVIKTVEKGLFDLSISRKRESVMN 244 (564)
T ss_dssp ECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTT
T ss_pred cCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhCCCCCccccCcCCCCCC
Confidence 122222 2221111000 0111111 1111 121 12111122333442 1678
Q ss_pred CccCCCC--------Ccchh----hHhhh---h---------h---hCCCceEeeeccCCcCchhHHHHHHHhhccCCCC
Q psy14486 206 WGAGRPG--------WHIEC----SAMSC---Y---------L---LGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKF 258 (472)
Q Consensus 206 wG~g~Pg--------Whiec----sam~~---~---------~---~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~ 258 (472)
||+++|| |+-.. +++.. . + -.++.|+|+.|+|+++||...|+|+++++ |.++
T Consensus 245 WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~-g~~~ 323 (564)
T 3kfl_A 245 WSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSA-ELPL 323 (564)
T ss_dssp CSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHT-TCCC
T ss_pred CCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhC-CCCC
Confidence 9999997 43211 11110 0 1 13467999999999999999999998887 6667
Q ss_pred ceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhh-cCCCCCcccCHHHHHHHHH--HHHHHHHHHHhc-
Q psy14486 259 VNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR-SHYRSTINYSEIYLNYAKK--SLIRLYLAIKDI- 334 (472)
Q Consensus 259 ~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~~~~--~~~r~~~~~~~~- 334 (472)
++.++++|||+.+|+|||||+||+|+|.|++++||+|++|||+++ .++.++++||++.+.+..| .++++.|+++++
T Consensus 324 ~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~ 403 (564)
T 3kfl_A 324 PERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCV 403 (564)
T ss_dssp CSCEEEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHH
T ss_pred CcEEEEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788899999999999999999999999999999999999999 6999999999999988765 345555554432
Q ss_pred ------Cccccccc----cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 335 ------PKINYKKI----IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 335 ------~~~~~~~~----~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.+..+... .+. ...+.+.+.++| +++++++|+..|++|++.+|+|++
T Consensus 404 ~~~~~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~i~~l~~~~n~Y~~ 465 (564)
T 3kfl_A 404 APKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIAIFDVLRSLNAYVT 465 (564)
T ss_dssp CTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHH
Confidence 22122110 111 146788899999 899999999999999999999986
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=8.5e-53 Score=451.16 Aligned_cols=355 Identities=17% Similarity=0.137 Sum_probs=261.4
Q ss_pred cccCCCCceEEEEcCCCCC--CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy14486 17 FYPITPGKVSLYVCGITAY--DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRF 94 (472)
Q Consensus 17 ~~p~~~~~v~~y~cgPt~~--g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~ 94 (472)
-.|.+++++++|+|+|+|| |++||||+|+++++|+++|++|++||+|.+++|+||+|+||+.+|+++|+++++++++|
T Consensus 10 ~~~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 89 (560)
T 3h99_A 10 HGSMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEM 89 (560)
T ss_dssp -------CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHH
Confidence 3566789999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCccccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc------------ccCcCc
Q psy14486 95 IKAAQEDSLLLHIQPPDYQPCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN------------FLNYGK 160 (472)
Q Consensus 95 ~~~~~~~l~~LgI~~d~~~~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~------------~~~yg~ 160 (472)
.+.|+++|++|||++|.++ +++ +|.+.+++++++|.++|++|++ ++.+|||+.+ ||.||.
T Consensus 90 ~~~~~~~~~~lgi~~d~~~-~t~~~~~~~~v~~~~~~L~~~G~iy~~-----~~~~~~~~~~~~~l~~~~v~g~cp~c~~ 163 (560)
T 3h99_A 90 SQEHQTDFAGFNISYDNYH-STHSEENRQLSELIYSRLKENGFIKNR-----TISQLYDPEKGMFLPDRFVKGTCPKCKS 163 (560)
T ss_dssp HHHHHHHHHHTTCCCSEEE-ESSSHHHHHHHHHHHHHHHHTTCEEEE-----EEEEEEETTTTEECCGGGEEEECTTTCC
T ss_pred HHHHHHHHHHcCCCCCCce-eCCCHHHHHHHHHHHHHHHHCCCEEEe-----eeeEeecCccCceecchhcCCCCCCCCC
Confidence 9999999999999999874 444 6889999999999999999998 5899999865 345542
Q ss_pred c---------cCCC--ccccc------cC-CCCc----------cccccCccc--------------cccccccCCCCCc
Q psy14486 161 L---------SGRL--ISSNF------NK-INEK----------NNFKKDPLD--------------FALWKVSKNNDPY 198 (472)
Q Consensus 161 l---------~~~~--~~~~~------~g-~v~~----------~~~k~~~~d--------------f~lwk~~~~g~~~ 198 (472)
. |+.. ..+++ +| ++.. ...+....+ +..|......+.+
T Consensus 164 ~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~ 243 (560)
T 3h99_A 164 PDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWD 243 (560)
T ss_dssp SSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEE
T ss_pred cccccchhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCC
Confidence 1 1211 11111 12 1110 000000000 0011111122223
Q ss_pred cccccC-CCccCCCC--------Ccchh----hHh------------hhhhhCCCce-----EeeeccCCcCchhHHHHH
Q psy14486 199 EIRWNS-KWGAGRPG--------WHIEC----SAM------------SCYLLGSHFD-----IHGGGQDLKFPHHENEIA 248 (472)
Q Consensus 199 ~~~w~~-~wG~g~Pg--------Whiec----sam------------~~~~~g~~~d-----ih~~G~Dl~fpH~~~~~a 248 (472)
++ ++. .||.++|+ |+-.. +++ ...++ +.+ +|++|+|+++||+.+++|
T Consensus 244 Is-R~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~w--p~~~~~~~~~~~G~D~~~fh~~~~~a 320 (560)
T 3h99_A 244 IS-RDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYW--KKDSTAELYHFIGKDIVYFLSLFWPA 320 (560)
T ss_dssp CE-EESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH--BTTCCSEEEEEEEGGGHHHHHTHHHH
T ss_pred cc-ccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhC--cCCCCceeEEEeccccchhHHHHHHH
Confidence 33 444 68999995 43221 111 01122 344 999999999999999999
Q ss_pred HHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCC-CCcccCHHHHHHHHH----
Q psy14486 249 QSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYR-STINYSEIYLNYAKK---- 322 (472)
Q Consensus 249 ~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~-~~~~fs~~~l~~~~~---- 322 (472)
+++++ |.++|+.++.+|||+++|+|||||+||+|+|.|++++||+|++||||++. +.. ++++|+++.+.+..+
T Consensus 321 ~l~~~-g~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~ 399 (560)
T 3h99_A 321 MLEGS-NFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIV 399 (560)
T ss_dssp HHHHT-TBCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCC
T ss_pred HHHhC-CCCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 99886 55666666777999999999999999999999999999999999999997 556 799999999876443
Q ss_pred -----HHHHHHHHHHhc-CccccccccCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 323 -----SLIRLYLAIKDI-PKINYKKIIDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 323 -----~~~r~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
.+.|+.+++.+. .+..+....+. ...+...+.++| ++++++.|+..|++|++.+|+|++
T Consensus 400 ~~l~n~~~R~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~l~~l~~~~n~Yi~ 469 (560)
T 3h99_A 400 NKVVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVREIMALADLANRYVD 469 (560)
T ss_dssp CCCTHHHHTTHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHH
Confidence 344554444432 22112111121 146778899999 899999999999999999999975
No 13
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=1.9e-47 Score=410.63 Aligned_cols=339 Identities=14% Similarity=0.068 Sum_probs=249.9
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHH---H-----------------------
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKI---I----------------------- 77 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki---~----------------------- 77 (472)
+|.||.|||||||++||||+|++|++|+++|+|++.||+|.++++++|+|.++ +
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 79999999999999999999999999999999999999999999999998332 1
Q ss_pred -H-------------------HHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCc--HHHHHHHHHHHHHCCC
Q psy14486 78 -A-------------------CAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNY--IPQILKMIEKLIFNGL 135 (472)
Q Consensus 78 -~-------------------~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~--~~~~~~~i~~L~~~G~ 135 (472)
. ++.+.|.. +++++.+.+.|.+++++|||.+|.+ +++|++ .+.+++++++|.++|+
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~~-~~~~~~~~~~~~~~~~~LgI~~D~~-~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGEL-REEVNRILLAQMATMHALNARYDLL-VWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHTTCCCSEE-EEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchHH-HHHHHHHHHHHHHHHHHcCCEeEEe-ccCCcccccchHHHHHHHHHHCCC
Confidence 1 11345553 9999999999999999999999876 788876 7899999999999999
Q ss_pred cc-----ccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCccc--cccccccCCCCC-ccccccCCCc
Q psy14486 136 AY-----QNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLD--FALWKVSKNNDP-YEIRWNSKWG 207 (472)
Q Consensus 136 ~y-----~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~d--f~lwk~~~~g~~-~~~~w~~~wG 207 (472)
+| +. +|.+|++++.|.....+... +..-.+|.. .| ...| +++||-....+. ....|.+|||
T Consensus 262 ~y~~~~g~~-----~G~~~~~~~~~g~~~~l~~~-vi~ksdG~~---~Y--~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~ 330 (592)
T 1iq0_A 262 VFRPREGKY-----AGALVMDASPVIPGLEDPFF-VLLRSNGTA---TY--YAKDIAFQFWKMGILEGLRFRPYENPYYP 330 (592)
T ss_dssp EECCSSSTT-----TTCEEEECTTTSCSCSCCEE-EEECTTSCB---CH--HHHHHHHHHHHTTSSCCCEEEECCCSSCT
T ss_pred cccCcccCc-----CCCEEEechhcCCCCCCCce-EEEecCCce---EE--ecchHHHHHHHhhhhhhhhhhhhhcCcch
Confidence 99 55 69999987765322111000 000001100 01 0224 477851100000 0112789997
Q ss_pred cCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCC-ceEEEee--eeEEecCccccccCCCccC
Q psy14486 208 AGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKF-VNYWMHS--GFVKINNKKMSKSFGNFCT 284 (472)
Q Consensus 208 ~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~-~~~~~h~--g~l~~~G~KMSKS~Gn~i~ 284 (472)
+|+||++|++|....++..++|++.+.++-|++.. +...++ |.++ ++.|.|. |||+++|+|||||+||+|+
T Consensus 331 --r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~---~~~~al-G~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~ 404 (592)
T 1iq0_A 331 --GLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVR---AALALA-GYPALAEKAHHLAYETVLLEGRQMSGRKGLAVS 404 (592)
T ss_dssp --TCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHH---HHHHHT-TCHHHHTTEEEEEECCEEETTBCSCC----CCB
T ss_pred --hhcccccCcccCCCCCCEEEEEEeccHHHHHHHHH---HHHHHc-CCCCCCCcEEEEEeeEEEcCCCcccCCCCCccC
Confidence 89999999999765666566777766665555542 222333 6665 4456666 7799999999999999999
Q ss_pred HHHHHhh-------------------------CChhhHHHHhhhcCCCCCcccCHHHHHHHHH--------HHHHHHHHH
Q psy14486 285 IRDLLKK-------------------------YNPEVIRFFILRSHYRSTINYSEIYLNYAKK--------SLIRLYLAI 331 (472)
Q Consensus 285 ~~dll~~-------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~--------~~~r~~~~~ 331 (472)
++|++++ ++++++|||+|+.+++++++||++.+.+..+ ++.|+.+++
T Consensus 405 l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil 484 (592)
T 1iq0_A 405 VDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSIL 484 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999998 9999999999999999999999999986543 477888888
Q ss_pred HhcCcc-cccccc----Cc-----chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Q psy14486 332 KDIPKI-NYKKII----DL-----NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS 382 (472)
Q Consensus 332 ~~~~~~-~~~~~~----~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~ 382 (472)
++.... .+.... +. ...+.+.+.+++ ++++++.++.+|++|++.+|+|++
T Consensus 485 ~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~~~~yl~~La~~fn~fy~ 544 (592)
T 1iq0_A 485 RKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAA-EERTPHVLAQYLLDLAASWNAYYN 544 (592)
T ss_dssp HHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHH
Confidence 876321 111000 10 146788999999 899999999999999999999875
No 14
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=7.5e-49 Score=416.52 Aligned_cols=278 Identities=20% Similarity=0.231 Sum_probs=224.3
Q ss_pred EEEc--CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCccc--HHH---HHHHHHc--CCCH----------
Q psy14486 27 LYVC--GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID--DKI---IACAKKN--NESI---------- 87 (472)
Q Consensus 27 ~y~c--gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d--~ki---~~~a~~~--g~~~---------- 87 (472)
.|+| ||||||++||||+|++|++|+++|+|+++|++|.|++++||+| +|| +.+|.++ |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 6888 9999999999999999999999999999999999999999999 888 7778777 9988
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccccCCC-cHH-HHHHHHHHHHHCC-Cccc-----------cCCCccCCcEEEecc
Q psy14486 88 KTLTSRFIKAAQEDSLLLHIQPPDYQPCATN-YIP-QILKMIEKLIFNG-LAYQ-----------NNNGKINGDVNYSVR 153 (472)
Q Consensus 88 ~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~-~~~-~~~~~i~~L~~~G-~~y~-----------~~~~~~~g~v~f~~~ 153 (472)
++++++|.+.|+++|++|||.+|.+ ++|+ |.+ .+++++++|+++| .||. ..| ..+ ||++.
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~~--~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y---~~~-~~~~~ 174 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDLL--YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPL---PEN-WWPAM 174 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEEE--EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCC---CTT-CCSEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEE--echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccc---cCC-ceecc
Confidence 8999999999999999999988765 8888 888 9999999999999 4442 111 112 55544
Q ss_pred c-ccCcCcccCCCccccccCCCCccccccCccccccccccCCCCCccccccCCC-ccCCCCCcchhhHhhhhhhCCCceE
Q psy14486 154 N-FLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKW-GAGRPGWHIECSAMSCYLLGSHFDI 231 (472)
Q Consensus 154 ~-~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~w-G~g~PgWhiecsam~~~~~g~~~di 231 (472)
. ++.||++.. ++ +... ..+.+|.+ +.|.+. |+++| |.|+|+||++| +|..++||..+|
T Consensus 175 ~~~~~~~~~~~----~~-----~~~~--~~~~~f~~----~~g~~~---~~d~~~G~g~~~w~~d~-~~~~~~l~~~vd- 234 (523)
T 1irx_A 175 VYCPEHRREAE----II-----EWDG--GWKVKYKC----PEGHEG---WVDIRSGNVKLRWRVDW-PMRWSHFGVDFE- 234 (523)
T ss_dssp EECTTTCCEEC----EE-----EECS--SSCEEECC----SSSCCC---EECTTSSCEEECHHHHH-HHHHHHSCCCBC-
T ss_pred ccchhhCCccc----cc-----ccCC--CCceeeee----cCCCcc---ccCCcCCCCCCCCCcch-HhhHHHcCCCCc-
Confidence 3 345555421 11 1111 14567776 467776 99999 99999999999 899999976554
Q ss_pred eeeccCCcCch----hHHHHHHHhhccCCCCceEEEeeeeEEec--CccccccCCCccCHHHHHhhCChhhHHHHhhhcC
Q psy14486 232 HGGGQDLKFPH----HENEIAQSEGAYKHKFVNYWMHSGFVKIN--NKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSH 305 (472)
Q Consensus 232 h~~G~Dl~fpH----~~~~~a~~~a~~g~~~~~~~~h~g~l~~~--G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~ 305 (472)
++|+||++|| |.++++| .|+ |.++| +|+|++||+.+ |+|||||+||+|+++|+++.|+||++||||++.+
T Consensus 235 -~~G~Dh~~~h~s~~~~~~i~~-~al-G~~~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~ 310 (523)
T 1irx_A 235 -PAGKDHLVAGSSYDTGKEIIK-EVY-GKEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHR 310 (523)
T ss_dssp -CEEHHHHSTTSHHHHHHHHHH-HHH-CCCCC-BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSC
T ss_pred -CCCcCccCCCcchhhHHHHHH-HHh-CCCCC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcC
Confidence 9999999999 8999997 444 66555 68999999998 8999999999999999999999999999999999
Q ss_pred CCCCcccCHH-HHHHHHHHHHHHHHHHHhc
Q psy14486 306 YRSTINYSEI-YLNYAKKSLIRLYLAIKDI 334 (472)
Q Consensus 306 ~~~~~~fs~~-~l~~~~~~~~r~~~~~~~~ 334 (472)
++++++||++ .+.++.+.++|+.+.+...
T Consensus 311 ~~~~~~fs~~~~l~~~~~~~~~~~~~~~~~ 340 (523)
T 1irx_A 311 PNKEIKIDLGLGILNLYDEFEKVERIYFGV 340 (523)
T ss_dssp TTSCEEECCSTTHHHHHHHHHHHHHHHTTS
T ss_pred CCCCceeCcchhHHHHHHHHHHHHHHHhcc
Confidence 9999999999 9999999999998876553
No 15
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=6e-46 Score=400.24 Aligned_cols=353 Identities=16% Similarity=0.126 Sum_probs=258.1
Q ss_pred CCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHH-------------------------
Q psy14486 21 TPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDK------------------------- 75 (472)
Q Consensus 21 ~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~k------------------------- 75 (472)
.+++|.||.|||||+|++||||+|++|++|+++|+|++.||+|.++++++|+|.+
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 4678999999999999999999999999999999999999999999999998554
Q ss_pred --------------HHHHHHH-------------------cC-CCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCc--
Q psy14486 76 --------------IIACAKK-------------------NN-ESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNY-- 119 (472)
Q Consensus 76 --------------i~~~a~~-------------------~g-~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~-- 119 (472)
+...|++ .| ..++++++.+.+.|++++++|||.+|.+ +++|++
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~-~~es~~~~ 275 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLL-VWESDIVR 275 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEE-EEHHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccc-cCcCcccc
Confidence 2222222 23 5569999999999999999999999776 788877
Q ss_pred HHHHHHHHHHHHHCCCcc-----ccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCcccc--cccc--
Q psy14486 120 IPQILKMIEKLIFNGLAY-----QNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDF--ALWK-- 190 (472)
Q Consensus 120 ~~~~~~~i~~L~~~G~~y-----~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df--~lwk-- 190 (472)
.+.+++++++|.++|++| +. +|.+|++++.|.....+... +..-.+|+.. | ...|+ ++||
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~-----~Ga~~v~~~~~g~~~~~~~~-v~~ksdG~~~---Y--~~~Diay~~~K~~ 344 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKY-----RGAFVMDLRKLFPDMKNPIL-VLRRSDGTAT---Y--TGKDIAYHLWKFG 344 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTT-----TTCEEEECTTTCSSSSCCEE-EEECTTSCBC---H--HHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHCCCccccccCCc-----CCcEEEECcccCCccccCce-EEEecCCccc---c--chhhHHHHHHHhh
Confidence 789999999999999999 55 79999988876322111000 0000011000 0 02344 6775
Q ss_pred ------ccCCC-CCccccc-cCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCC-ceE
Q psy14486 191 ------VSKNN-DPYEIRW-NSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKF-VNY 261 (472)
Q Consensus 191 ------~~~~g-~~~~~~w-~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~-~~~ 261 (472)
..++. ++. | .+|||.|+|| +...++..++|++.|.|+-|++. .+.+.++ |.++ ++.
T Consensus 345 ll~~~fr~~~~~~~~---~~~~~wG~~~Pg--------~~~~~d~~IyV~g~~q~~~~~~l---~~~l~~l-G~~~~~~~ 409 (629)
T 2zue_A 345 KIDVDLLYKEWDSTT---WTTAPDGKSMPN--------KFGNANIVINVIGAEQKHPQLAI---KYALQLL-GFEDAAAN 409 (629)
T ss_dssp CSCCCCEEEECSSSC---EEEEEEEEECTT--------SSCCCSEEEEEEEGGGHHHHHHH---HHHHHHT-TCHHHHHT
T ss_pred cccccccCCcccccc---cccCCCCCCCCC--------ccCCCCcEEEEEeCcHhhHHHHH---HHHHHHc-CCCCCCCe
Confidence 32222 222 4 4799999997 11233334667777766433332 2222333 6666 556
Q ss_pred EEee--eeEEecCccccccCC--CccCHHHHHhh---------------------------CChhhHHHHhhhcCCCCCc
Q psy14486 262 WMHS--GFVKINNKKMSKSFG--NFCTIRDLLKK---------------------------YNPEVIRFFILRSHYRSTI 310 (472)
Q Consensus 262 ~~h~--g~l~~~G~KMSKS~G--n~i~~~dll~~---------------------------~~~d~lR~~ll~~~~~~~~ 310 (472)
|.|. |||+++|+|||||+| |+|+++|++++ ++++++||++|+.++++++
T Consensus 410 ~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~ 489 (629)
T 2zue_A 410 LYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKI 489 (629)
T ss_dssp EEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCE
T ss_pred EEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCCCCCC
Confidence 7676 899999999999999 99999999998 9999999999999999999
Q ss_pred ccCHHHHHHHH--------HHHHHHHHHHHhcCccc--------cc-cc--c-Cc--------chhHHHHHHHHHHhccC
Q psy14486 311 NYSEIYLNYAK--------KSLIRLYLAIKDIPKIN--------YK-KI--I-DL--------NEPHAKRFIIAMNDDFN 362 (472)
Q Consensus 311 ~fs~~~l~~~~--------~~~~r~~~~~~~~~~~~--------~~-~~--~-~~--------~~~~~~~~~~al~dd~n 362 (472)
+||++.+.+.. +++.|+.+++++..... +. .. . +. ...+.+.+.+++ ++++
T Consensus 490 ~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~ 568 (629)
T 2zue_A 490 IFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAG-KDVK 568 (629)
T ss_dssp ECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHH-HTTC
T ss_pred eecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhCC
Confidence 99999987443 46899999988752110 00 00 0 10 146778889998 8999
Q ss_pred hhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHhhhccccc
Q psy14486 363 TPVAISILFDLANIINKNKS-------------------IKMAKQLRGLGNWLGLLEY 401 (472)
Q Consensus 363 ~~~al~~l~~l~~~~N~~~~-------------------~~~~~~l~~~~~ilGi~~~ 401 (472)
+++++.+|++|++.+|+|++ ..+...|...+.+|||..+
T Consensus 569 p~~l~~yl~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 569 PHLIAWFANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999986 1123456667778887543
No 16
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=1.9e-43 Score=391.97 Aligned_cols=351 Identities=18% Similarity=0.217 Sum_probs=256.3
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHH----cCCC------------H
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKK----NNES------------I 87 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~----~g~~------------~ 87 (472)
+..++.++|+|+|.+||||+++++++|+++||.|++||+|.|++|+|+||.++..++++ +|++ +
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~ 114 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERV 114 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHH
Confidence 56677777888899999999999999999999999999999999999999998887763 4665 4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccC-------
Q psy14486 88 KTLTSRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLN------- 157 (472)
Q Consensus 88 ~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~------- 157 (472)
++++++|.+.+.+++++||++.|+-.++.| +|.+.++.+|.+|+++|++|++ ...|+||+.+...
T Consensus 115 ~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg-----~~~v~wcp~~~T~Lsd~EV~ 189 (862)
T 1gax_A 115 WQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRA-----PRLVNWCPRCETTLSDLEVE 189 (862)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEE-----CCEEEEETTTTEEECGGGEE
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEec-----ccccccCCCcCccccccccc
Confidence 578999999999999999999996433333 6899999999999999999998 4778998876210
Q ss_pred c---------------C------------------------------cccCCCccccccC-C--------CCccc-----
Q psy14486 158 Y---------------G------------------------------KLSGRLISSNFNK-I--------NEKNN----- 178 (472)
Q Consensus 158 y---------------g------------------------------~l~~~~~~~~~~g-~--------v~~~~----- 178 (472)
| + .|.|........| . |+.+.
T Consensus 190 ~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V 269 (862)
T 1gax_A 190 TEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGAL 269 (862)
T ss_dssp ECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEE
T ss_pred cccccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccccccCCCCcce
Confidence 0 0 0000000000000 0 00000
Q ss_pred ---cccCcccccc--------------------------------------------------------------cccc-
Q psy14486 179 ---FKKDPLDFAL--------------------------------------------------------------WKVS- 192 (472)
Q Consensus 179 ---~k~~~~df~l--------------------------------------------------------------wk~~- 192 (472)
..+++.||.. |.+.
T Consensus 270 ~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~ 349 (862)
T 1gax_A 270 KVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGT 349 (862)
T ss_dssp ECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCS
T ss_pred EecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCC
Confidence 0000011100 1100
Q ss_pred ----------------------------------------------CCCCCccccccCCCccCCCCCcch-hhHh--h--
Q psy14486 193 ----------------------------------------------KNNDPYEIRWNSKWGAGRPGWHIE-CSAM--S-- 221 (472)
Q Consensus 193 ----------------------------------------------~~g~~~~~~w~~~wG~g~PgWhie-csam--~-- 221 (472)
...+-+++ +...||.++|.|+.+ |..+ +
T Consensus 350 ~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~IS-Rqr~WG~pIP~w~~~~~~~i~v~~~ 428 (862)
T 1gax_A 350 PIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNIS-RQLWWGHQIPAWYCEDCQAVNVPRP 428 (862)
T ss_dssp BCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCB-CCCSSSCCCCCEEETTTCCEECCCG
T ss_pred eEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEe-cccCCCcccCceecCCCCEEEEecc
Confidence 00111122 345799999998763 3210 0
Q ss_pred ---------------------------------h--hhhC-----------CCceEeeeccCCcCchhHHHHHHHhhccC
Q psy14486 222 ---------------------------------C--YLLG-----------SHFDIHGGGQDLKFPHHENEIAQSEGAYK 255 (472)
Q Consensus 222 ---------------------------------~--~~~g-----------~~~dih~~G~Dl~fpH~~~~~a~~~a~~g 255 (472)
. ..+| .|.|+|++|+|++|+|+.+.++++.++.|
T Consensus 429 ~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g 508 (862)
T 1gax_A 429 ERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMG 508 (862)
T ss_dssp GGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSS
T ss_pred ccccccchhhhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcC
Confidence 0 0112 36899999999999999999999998888
Q ss_pred C-CCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHH
Q psy14486 256 H-KFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKSLIRLYLAIK 332 (472)
Q Consensus 256 ~-~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~~~~~~r~~~~~~ 332 (472)
. ||.++++| |+|+ .+|+|||||+||+|+|.|++++||+|++||||++. +++++++||++.++++.+.++|++|+++
T Consensus 509 ~~Pfk~v~~h-G~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~r 587 (862)
T 1gax_A 509 ERPFKTVLLH-GLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAAR 587 (862)
T ss_dssp SCSBSEEEEE-CCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccEEEEe-eeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 5 66777776 7776 79999999999999999999999999999999996 9999999999999999999999999875
Q ss_pred hc----Ccccccc-c---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHHH--HHHHHHH
Q psy14486 333 DI----PKINYKK-I---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLAN--IINKNKS 382 (472)
Q Consensus 333 ~~----~~~~~~~-~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~~--~~N~~~~ 382 (472)
.+ .+..+.. . .|. .+.+..++.++| ++|+++.|++.|++|+. .+|.|++
T Consensus 588 f~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~l~~f~~~~~~n~Yie 651 (862)
T 1gax_A 588 FVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAAREVYELVWSEFCDWYLE 651 (862)
T ss_dssp HHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHhcccCCCCccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHhhHHHHH
Confidence 43 2211100 0 111 146788999999 99999999999999993 5777765
No 17
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.9e-42 Score=383.00 Aligned_cols=155 Identities=21% Similarity=0.284 Sum_probs=134.2
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhccCC-CCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhh-c
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR-S 304 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~ 304 (472)
.|+|+|++|+|++||||.++++++.++.+. ++|+.|+|+|||+.+|+|||||+||+|+|.|++++||+|++|||+++ +
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~ 681 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHC
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcC
Confidence 378999999999999999999999988774 78899999999999999999999999999999999999999999985 6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHhcCcc-cccc-c---cCc-----chhHHHHHHHHHHhccChhHHHHH-HHHH
Q psy14486 305 HYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKI-NYKK-I---IDL-----NEPHAKRFIIAMNDDFNTPVAISI-LFDL 373 (472)
Q Consensus 305 ~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~~-~~~~-~---~~~-----~~~~~~~~~~al~dd~n~~~al~~-l~~l 373 (472)
+++++++||++.+..+.+.++|++++++++... .+.. . .+. ...+..++.++| ++|+++.|+.. ++++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~~l 760 (810)
T 1wkb_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFYSI 760 (810)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTHHH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Confidence 999999999999999999999999998875321 1110 0 111 146778899999 99999999985 5799
Q ss_pred HHHHHHHHH
Q psy14486 374 ANIINKNKS 382 (472)
Q Consensus 374 ~~~~N~~~~ 382 (472)
++.+|+|++
T Consensus 761 ~~~~n~yi~ 769 (810)
T 1wkb_A 761 MNDLRWYLR 769 (810)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999976
No 18
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=4.4e-41 Score=375.91 Aligned_cols=351 Identities=18% Similarity=0.197 Sum_probs=254.7
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCH------------HHHH
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESI------------KTLT 91 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~------------~~~~ 91 (472)
+..+...+|+|+|.+||||+++++++|+++||.|++||+|.|++|+|+||.+|+.+|++.|+++ ++++
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~ 128 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFA 128 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHH
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHH
Confidence 4566667788889999999999999999999999999999999999999999999999999874 7899
Q ss_pred HHHHHHHHHHHHHhCCCCCCccccCC---CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccccc-------CcCc-
Q psy14486 92 SRFIKAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFL-------NYGK- 160 (472)
Q Consensus 92 ~~~~~~~~~~l~~LgI~~d~~~~r~s---~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~-------~yg~- 160 (472)
++|++.+++++++|||..|+-.+..| +|...++.+|.+|+++|++|++. ..|+||+.+.. .|..
T Consensus 129 ~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~-----~~v~wcp~~~T~Lae~eVey~d~ 203 (917)
T 1ffy_A 129 LEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGK-----KPVYWSPSSESSLAEAEIEYHDK 203 (917)
T ss_dssp HHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEE-----EEEEEETTTTEECCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecc-----cceeccCCCCcCcchhhhhcccc
Confidence 99999999999999998765433333 68899999999999999999984 77899887521 0000
Q ss_pred ----------c---------------------------------------------------------------------
Q psy14486 161 ----------L--------------------------------------------------------------------- 161 (472)
Q Consensus 161 ----------l--------------------------------------------------------------------- 161 (472)
+
T Consensus 204 ~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 283 (917)
T 1ffy_A 204 RSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIK 283 (917)
T ss_dssp EEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCC
T ss_pred cCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceee
Confidence 0
Q ss_pred -----cCCCcccc-------------ccC-CCCcc--------ccccCccccccccc-----------------------
Q psy14486 162 -----SGRLISSN-------------FNK-INEKN--------NFKKDPLDFALWKV----------------------- 191 (472)
Q Consensus 162 -----~~~~~~~~-------------~~g-~v~~~--------~~k~~~~df~lwk~----------------------- 191 (472)
+|..+... ..+ .|..+ ..-+.+.||..++.
T Consensus 284 ~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~ 363 (917)
T 1ffy_A 284 LEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFE 363 (917)
T ss_dssp CCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCS
T ss_pred eeeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccC
Confidence 00000000 000 00000 00011122222111
Q ss_pred -------------------------------------cCC----------------------------------------
Q psy14486 192 -------------------------------------SKN---------------------------------------- 194 (472)
Q Consensus 192 -------------------------------------~~~---------------------------------------- 194 (472)
.++
T Consensus 364 G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~ 443 (917)
T 1ffy_A 364 GMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYN 443 (917)
T ss_dssp SSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHH
Confidence 000
Q ss_pred -----CCCccccccCCCccCCCCCcch----------------------------------------h---h--------
Q psy14486 195 -----NDPYEIRWNSKWGAGRPGWHIE----------------------------------------C---S-------- 218 (472)
Q Consensus 195 -----g~~~~~~w~~~wG~g~PgWhie----------------------------------------c---s-------- 218 (472)
.+-+++ +...||.++|-|+.+ | .
T Consensus 444 ~l~~~~DW~IS-Rqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~ 522 (917)
T 1ffy_A 444 MVRDRGEWVIS-RQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKET 522 (917)
T ss_dssp HHHHCCCEECE-ESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECC
T ss_pred HHhcCccceee-ccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccC
Confidence 000111 234799999977532 0 0
Q ss_pred ---------Hhhhh-h------hCCCceEeeeccCCcCchhHHHHHHHhhccCC-CCceEEEeeeeEEe-cCccccccCC
Q psy14486 219 ---------AMSCY-L------LGSHFDIHGGGQDLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVKI-NNKKMSKSFG 280 (472)
Q Consensus 219 ---------am~~~-~------~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~~-~G~KMSKS~G 280 (472)
..+.+ . +..|.|++++|+|++++|....++++.++.|. |+.++++| |||+. +|+|||||+|
T Consensus 523 D~lD~WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlG 601 (917)
T 1ffy_A 523 DIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLG 601 (917)
T ss_dssp CEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSS
T ss_pred CCcCeecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccC
Confidence 00000 0 12368999999999998888888888888775 56666665 99995 9999999999
Q ss_pred CccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHhcC----cccc------ccc---cCc--
Q psy14486 281 NFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIP----KINY------KKI---IDL-- 345 (472)
Q Consensus 281 n~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~----~~~~------~~~---~~~-- 345 (472)
|+|+|.|++++||+|++|||+++++++++++||++.++++.+.++|++++++.+. ...+ ... .+.
T Consensus 602 NvV~P~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~i 681 (917)
T 1ffy_A 602 NVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYL 681 (917)
T ss_dssp CCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHH
T ss_pred CcCChHHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876542 1111 000 111
Q ss_pred ---chhHHHHHHHHHHhccChhHHHHHHHHHHH--HHHHHHH
Q psy14486 346 ---NEPHAKRFIIAMNDDFNTPVAISILFDLAN--IINKNKS 382 (472)
Q Consensus 346 ---~~~~~~~~~~al~dd~n~~~al~~l~~l~~--~~N~~~~ 382 (472)
...+..++.++| ++|+++.|++.|++|+. ..|.|++
T Consensus 682 l~~l~~~~~~v~~a~-e~~~f~~a~~~l~~f~~~~l~~~Yl~ 722 (917)
T 1ffy_A 682 LNRLREFTASTINNY-ENFDYLNIYQEVQNFINVELSNFYLD 722 (917)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 146678899999 89999999999999998 4555553
No 19
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=8.3e-42 Score=380.12 Aligned_cols=350 Identities=17% Similarity=0.187 Sum_probs=251.6
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHc-CCC----------------
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN-NES---------------- 86 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~-g~~---------------- 86 (472)
+..++..+|+|+|.+||||+++++++|+++||.|++||+|.+++|+|+||.+|+.+|++. |.+
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~ 118 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQA 118 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHH
Confidence 455666678888999999999999999999999999999999999999999999999986 876
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcc-ccCC--CcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccC------
Q psy14486 87 IKTLTSRFIKAAQEDSLLLHIQPPDYQ-PCAT--NYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLN------ 157 (472)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~LgI~~d~~~-~r~s--~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~------ 157 (472)
+++++++|.+.+++++++||+..|+-. .+++ +|.+.++.+|.+|+++|++|++ ...|+||+.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~-----~~~v~wcp~~~t~Lad~ev 193 (821)
T 1ile_A 119 CRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRD-----HKVVPYCPRCGTPLSSHEV 193 (821)
T ss_dssp HHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEE-----CCEEEEETTTTEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeec-----CcceEecCCCCCcccHhHh
Confidence 567899999999999999995554321 2333 6889999999999999999998 4778998875210
Q ss_pred ---cCcc-----------cCC------C---------c-----------------------c------------------
Q psy14486 158 ---YGKL-----------SGR------L---------I-----------------------S------------------ 167 (472)
Q Consensus 158 ---yg~l-----------~~~------~---------~-----------------------~------------------ 167 (472)
|... .+. + + +
T Consensus 194 ~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~ 273 (821)
T 1ile_A 194 ALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGT 273 (821)
T ss_dssp HHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTS
T ss_pred hcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCc
Confidence 1000 000 0 0 0
Q ss_pred ---------ccccC-C--------------------CCcc--------ccccCcccccc---------------------
Q psy14486 168 ---------SNFNK-I--------------------NEKN--------NFKKDPLDFAL--------------------- 188 (472)
Q Consensus 168 ---------~~~~g-~--------------------v~~~--------~~k~~~~df~l--------------------- 188 (472)
++ .| + |..+ ...+.+.||..
T Consensus 274 ~~~~~~~G~~l-~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~ 352 (821)
T 1ile_A 274 QVLKTFPGKAL-EGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE 352 (821)
T ss_dssp CEEEEECHHHH-TTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG
T ss_pred EEEEEechHHh-cCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCccc
Confidence 00 00 0 0000 00000011110
Q ss_pred -----------------------------------------------------------------------cccc--CC-
Q psy14486 189 -----------------------------------------------------------------------WKVS--KN- 194 (472)
Q Consensus 189 -----------------------------------------------------------------------wk~~--~~- 194 (472)
|... +.
T Consensus 353 ~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~ 432 (821)
T 1ile_A 353 PFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEG 432 (821)
T ss_dssp GGTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTT
T ss_pred CcCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEECchhhHh
Confidence 1000 00
Q ss_pred -------CCCc--cccccCCCccCCCCCcch---------------------------------------h---------
Q psy14486 195 -------NDPY--EIRWNSKWGAGRPGWHIE---------------------------------------C--------- 217 (472)
Q Consensus 195 -------g~~~--~~~w~~~wG~g~PgWhie---------------------------------------c--------- 217 (472)
+.+. ++ +...||.++|.|+.+ |
T Consensus 433 ~~~~~l~~l~DW~IS-Rqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~ 511 (821)
T 1ile_A 433 RYGEWLKNLVDWALS-RNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRV 511 (821)
T ss_dssp TTHHHHHTCCCEECC-BCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEEC
T ss_pred HHHHHHhCCchheec-ccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhc
Confidence 1112 22 345699999977531 1
Q ss_pred ---------hHhh-hhhhC------------CCceEeeeccCCcCchhHHHHHHHhhccCC-CCceEEEeeeeEE-ecCc
Q psy14486 218 ---------SAMS-CYLLG------------SHFDIHGGGQDLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVK-INNK 273 (472)
Q Consensus 218 ---------sam~-~~~~g------------~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~-~~G~ 273 (472)
|..+ ...+| +|.|+|++|+|++|+|+.+..+++.++.|. |+.++|+| ||++ .+|+
T Consensus 512 ~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~h-g~vl~~~G~ 590 (821)
T 1ile_A 512 PYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQ 590 (821)
T ss_dssp SCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSS
T ss_pred ccccceecccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEE-eeEECCCCC
Confidence 1100 00112 368999999999999999999999998875 67788887 6655 6999
Q ss_pred cccccCCCccCHHHHHhhCChhhHHHHhhhc-CCCCCcccCHHHHHHH-HHHHHHHHHHHHhcC------cccc-c----
Q psy14486 274 KMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYA-KKSLIRLYLAIKDIP------KINY-K---- 340 (472)
Q Consensus 274 KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~~-~~~~~r~~~~~~~~~------~~~~-~---- 340 (472)
|||||+||+|+|.|++++||+|++|||+++. +++++++||++.+.++ .+.++|++++++++. +..+ .
T Consensus 591 KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~ 670 (821)
T 1ile_A 591 KMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPP 670 (821)
T ss_dssp CCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCS
T ss_pred CCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccc
Confidence 9999999999999999999999999999997 6999999999999994 778999998876431 1111 0
Q ss_pred cc---cCc-----chhHHHHHHHHHHhccChhHHHHHHHHHH--HHHHHHHH
Q psy14486 341 KI---IDL-----NEPHAKRFIIAMNDDFNTPVAISILFDLA--NIINKNKS 382 (472)
Q Consensus 341 ~~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l~~l~--~~~N~~~~ 382 (472)
.. .+. ...+..++.++| ++|+++.|++.|++++ ...|.|++
T Consensus 671 ~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~f~~A~~~l~~f~~~~~~n~Yl~ 721 (821)
T 1ile_A 671 EKRPEMDRWLLARMQDLIQRVTEAL-EAYDPTTSARALRDFVVEDLSQWYVR 721 (821)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHSSTTTHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 111 145678899999 7999999999999999 66777764
No 20
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-40 Score=374.42 Aligned_cols=155 Identities=21% Similarity=0.277 Sum_probs=134.0
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhccCC-CCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhh-c
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGAYKH-KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR-S 304 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~-~ 304 (472)
.|.|+|++|+|++||||.++++++.++++. ++|+.|+|+|||+.+|+|||||+||+|+|.|++++||+|++|||+++ +
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 378999999999999999999999998764 67899999999999999999999999999999999999999999985 5
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHhcCcc-cccc-c---cCc-----chhHHHHHHHHHHhccChhHHHHHH-HHH
Q psy14486 305 HYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKI-NYKK-I---IDL-----NEPHAKRFIIAMNDDFNTPVAISIL-FDL 373 (472)
Q Consensus 305 ~~~~~~~fs~~~l~~~~~~~~r~~~~~~~~~~~-~~~~-~---~~~-----~~~~~~~~~~al~dd~n~~~al~~l-~~l 373 (472)
+++++++|+++.+.++.+.++|++++++.+... .+.. . .+. ...+..++.++| ++|+++.|+..+ +.+
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~~l 760 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFYSI 760 (967)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTHHH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Confidence 999999999999999999999999998876321 1110 0 111 146778899999 999999999865 699
Q ss_pred HHHHHHHHH
Q psy14486 374 ANIINKNKS 382 (472)
Q Consensus 374 ~~~~N~~~~ 382 (472)
++.+|.|++
T Consensus 761 ~~~~n~Yi~ 769 (967)
T 1wz2_A 761 MNDLRWYLR 769 (967)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 21
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=3.7e-41 Score=372.52 Aligned_cols=135 Identities=20% Similarity=0.204 Sum_probs=113.3
Q ss_pred cccccCC-CCceEEEEc--CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHH
Q psy14486 15 QIFYPIT-PGKVSLYVC--GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLT 91 (472)
Q Consensus 15 ~~~~p~~-~~~v~~y~c--gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~ 91 (472)
..|.+.. +++.++|+| +|+|+|++||||+|+++++|+++||+|++||+|.+++|+|++|.+|+.+|.+.|+++++++
T Consensus 42 ~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~ 121 (880)
T 4arc_A 42 RTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWT 121 (880)
T ss_dssp TTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHH
T ss_pred CCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHH
Confidence 3455533 345566665 6888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCc---cccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc
Q psy14486 92 SRFIKAAQEDSLLLHIQPPDY---QPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN 154 (472)
Q Consensus 92 ~~~~~~~~~~l~~LgI~~d~~---~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~ 154 (472)
+++++.|+++|++||+++|+- .+...+|.+.++++|.+|+++|++|++ +..|+||+.|
T Consensus 122 ~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~-----~~~v~wcp~~ 182 (880)
T 4arc_A 122 YDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKK-----TSAVNWCPND 182 (880)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEE-----EECC------
T ss_pred HHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEe-----ceeEeecCCc
Confidence 999999999999999999943 233337899999999999999999998 4778888765
No 22
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=2.1e-41 Score=362.45 Aligned_cols=324 Identities=15% Similarity=0.147 Sum_probs=253.0
Q ss_pred CCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCccc---------------------------
Q psy14486 21 TPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID--------------------------- 73 (472)
Q Consensus 21 ~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d--------------------------- 73 (472)
.+++|.|+.|||||+|++||||+|++|++|+++|+|++.||+|.++++++|+|
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 46799999999999999999999999999999999999999999999999953
Q ss_pred ---------------------HHHHHHHHH------cCCC-----HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcH-
Q psy14486 74 ---------------------DKIIACAKK------NNES-----IKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI- 120 (472)
Q Consensus 74 ---------------------~ki~~~a~~------~g~~-----~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~- 120 (472)
++|+.+|++ .|.+ |+++++.+.+.|.+++++|||.+|.+ +++|+|+
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~-~~ES~~~~ 299 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVY-SGESQVSK 299 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEE-EEGGGCCH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceee-cCcchhhh
Confidence 555666776 4766 78999999999999999999999765 7888887
Q ss_pred HHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCcccCCCccc-cccCCCCccccccC------cccc--ccccc
Q psy14486 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD------PLDF--ALWKV 191 (472)
Q Consensus 121 ~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~-~~~g~v~~~~~k~~------~~df--~lwk~ 191 (472)
+.+.++++.|.++|++|+. +|.+||+++.| |+ +++. +. .|.+ +.|+ ++||.
T Consensus 300 ~~~~~vi~~L~~kG~~ye~-----dGa~~~~~~~~---g~----~~d~~v~--------~KsDG~~~Y~t~Dia~~~~k~ 359 (607)
T 1f7u_A 300 ESMLKAIDLFKEKGLTHED-----KGAVLIDLTKF---NK----KLGKAIV--------QKSDGTTLYLTRDVGAAMDRY 359 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEE-----TTEEEEEGGGT---CT----TTCEEEE--------ECTTSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCEEEE-----CCcEEEEeccc---CC----CCCceeE--------eccCCCcCCCCCcHHHHHHHH
Confidence 8999999999999999997 79999998876 32 1110 10 1111 2233 33432
Q ss_pred cCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEEec
Q psy14486 192 SKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKIN 271 (472)
Q Consensus 192 ~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~ 271 (472)
. ...++..++||++|.|+.|++.. +..+++ |.+++++|.|.+|.+++
T Consensus 360 ~-----------------------------~~~~d~~IyV~g~~q~~~f~q~~---~~~~~l-G~~~~~~~~Hv~fg~v~ 406 (607)
T 1f7u_A 360 E-----------------------------KYHFDKMIYVIASQQDLHAAQFF---EILKQM-GFEWAKDLQHVNFGMVQ 406 (607)
T ss_dssp H-----------------------------HHCCSEEEEECCGGGHHHHHHHH---HHHHHT-TCGGGGGEEEECCCCEE
T ss_pred h-----------------------------hcCCCcEEEEEcChHhhHHHHHH---HHHHHc-CCCcCcEEEEecccccc
Confidence 1 11234467899999999888753 333343 67788889999996665
Q ss_pred CccccccCCCccCHHHHHhhC----------Ch------------------hhHHHHhhhcCCCCCcccCHHHHHHHH--
Q psy14486 272 NKKMSKSFGNFCTIRDLLKKY----------NP------------------EVIRFFILRSHYRSTINYSEIYLNYAK-- 321 (472)
Q Consensus 272 G~KMSKS~Gn~i~~~dll~~~----------~~------------------d~lR~~ll~~~~~~~~~fs~~~l~~~~-- 321 (472)
|||||+||+|+++|+++++ ++ .++||++|+++++++++|+++.+.++.
T Consensus 407 --kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~ 484 (607)
T 1f7u_A 407 --GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGD 484 (607)
T ss_dssp --SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSS
T ss_pred --cccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhcc
Confidence 6999999999999999987 33 489999999999999999999987554
Q ss_pred ------HHHHHHHHHHHhcCcccc----ccc---c-Cc--------chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Q psy14486 322 ------KSLIRLYLAIKDIPKINY----KKI---I-DL--------NEPHAKRFIIAMNDDFNTPVAISILFDLANIINK 379 (472)
Q Consensus 322 ------~~~~r~~~~~~~~~~~~~----~~~---~-~~--------~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~ 379 (472)
.++.|+++++++..+..+ ..+ . +. ...+.+.+.+|+ ++++++.++.+|++|++.+|+
T Consensus 485 t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~P~~l~~Yl~~La~~fn~ 563 (607)
T 1f7u_A 485 TGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHEPTTVVTYLFKLTHQVSS 563 (607)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Confidence 368999999998732111 000 1 11 146778888998 899999999999999999999
Q ss_pred HHH-------------------HHHHHHHHHHHhhhccccc
Q psy14486 380 NKS-------------------IKMAKQLRGLGNWLGLLEY 401 (472)
Q Consensus 380 ~~~-------------------~~~~~~l~~~~~ilGi~~~ 401 (472)
|++ ..++..|+..+.+|||..+
T Consensus 564 fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 564 CYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp HHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 986 1123567777888888643
No 23
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=4.9e-39 Score=358.02 Aligned_cols=127 Identities=24% Similarity=0.227 Sum_probs=114.0
Q ss_pred CceEEEEc--CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy14486 23 GKVSLYVC--GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQE 100 (472)
Q Consensus 23 ~~v~~y~c--gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 100 (472)
++.++|++ .|+|+|++||||+|+++++|+++||+|++||+|.+++|+|++|++|+.+|.++|++++++++++++.|++
T Consensus 31 ~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~ 110 (878)
T 2v0c_A 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKE 110 (878)
T ss_dssp ---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34455554 4888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCC---ccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc
Q psy14486 101 DSLLLHIQPPD---YQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN 154 (472)
Q Consensus 101 ~l~~LgI~~d~---~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~ 154 (472)
+|++|||.+|+ +.+..++|.+.++++|.+|+++|++|++ ++.||||+.+
T Consensus 111 ~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~-----~~~v~w~p~~ 162 (878)
T 2v0c_A 111 SLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRA-----KGLVNWCPKC 162 (878)
T ss_dssp HHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEE-----EEEEEEETTT
T ss_pred HHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEc-----ceeEEEeCCC
Confidence 99999999993 3344558999999999999999999998 5889999876
No 24
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=1.9e-34 Score=299.24 Aligned_cols=331 Identities=16% Similarity=0.125 Sum_probs=236.1
Q ss_pred CCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHH-------HHHHH--cCCC-----
Q psy14486 21 TPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKII-------ACAKK--NNES----- 86 (472)
Q Consensus 21 ~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~-------~~a~~--~g~~----- 86 (472)
.+++|.|-.++|+|+|++||||+|+++++|+++|++++.||+|.....+.|+|.++- .+..+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~ 107 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPE 107 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCS
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCch
Confidence 557899999999999999999999999999999999999999999999999998862 22122 1211
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCC
Q psy14486 87 --------------------------------IKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNG 134 (472)
Q Consensus 87 --------------------------------~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G 134 (472)
++...+...+.|.+++++|||.+|.++...+-+. .+.++++.|.++|
T Consensus 108 ~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g 186 (464)
T 3fnr_A 108 QYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHK 186 (464)
T ss_dssp SCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTT
T ss_pred hhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCC
Confidence 1122344566889999999999998865445454 8999999999999
Q ss_pred CccccCCCccCCcEEEecccccCcCcccCCCccccccCCCCccccccCccccccccccCCCCCccccccCCCccCCCCCc
Q psy14486 135 LAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWH 214 (472)
Q Consensus 135 ~~y~~~~~~~~g~v~f~~~~~~~yg~l~~~~~~~~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWh 214 (472)
++|++ +|.+|++++.+..- .|+++-|+ +|-+. +.
T Consensus 187 ~~~e~-----dGa~~~~~~~~g~~-------------------------~~~vl~ks--DG~~~--------------Y~ 220 (464)
T 3fnr_A 187 GIYEQ-----EGKIWLASSQKGDE-------------------------KDRVIIRE--DGRGT--------------YL 220 (464)
T ss_dssp CEEEE-----TTEEEECGGGGTCS-------------------------SCEEEECT--TSCBC--------------HH
T ss_pred CEEEe-----CCeEEEEecccCCC-------------------------CceEEEeC--CCcee--------------hh
Confidence 99998 79999987754210 12333222 33322 11
Q ss_pred ch-hhHhhhhh-hCCCceEeeeccCCcCchhHHHHHHHhhccCCCCce-EEEeeeeEEe--cCc--cccccCCCccCHHH
Q psy14486 215 IE-CSAMSCYL-LGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVN-YWMHSGFVKI--NNK--KMSKSFGNFCTIRD 287 (472)
Q Consensus 215 ie-csam~~~~-~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~-~~~h~g~l~~--~G~--KMSKS~Gn~i~~~d 287 (472)
.. .++...++ -|..-.|.+.|.|+. -|.....+...++ |.++++ .++++|||++ +|+ |||||+||+|+++|
T Consensus 221 t~DiA~~~~r~~~~~d~~Iyv~G~dq~-~~f~~l~~~l~~l-G~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~d 298 (464)
T 3fnr_A 221 AADIVYHKDKMSRGYGKCINIWGADHH-GYIPRMKAAMEFL-GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSD 298 (464)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEGGGG-GGHHHHHHHHHTT-TCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHH
T ss_pred hHHHHHHHHHHHcCCCeEEEEecCcHH-HHHHHHHHHHHHc-CCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHH
Confidence 00 01111111 122445888999987 3433333444443 666565 4677899976 775 99999999999999
Q ss_pred HHhhCChhhHHHHhhhcCCCCCcccCHHHHHHHHH---------HHHHHHHHHHhcCcc--c-cc--c-cc---Cc----
Q psy14486 288 LLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKK---------SLIRLYLAIKDIPKI--N-YK--K-II---DL---- 345 (472)
Q Consensus 288 ll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~~---------~~~r~~~~~~~~~~~--~-~~--~-~~---~~---- 345 (472)
+++++++|++|||+++.+++++++|+++.+.+..+ ++.|+.+++++.... . +. . .. +.
T Consensus 299 ll~~~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~ 378 (464)
T 3fnr_A 299 VVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLF 378 (464)
T ss_dssp HHHHHCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHH
Confidence 99999999999999999999999999999865432 578999999886421 1 10 0 00 11
Q ss_pred -chhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH-------------HH--H--HHHHHHHHhhhccccc
Q psy14486 346 -NEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS-------------IK--M--AKQLRGLGNWLGLLEY 401 (472)
Q Consensus 346 -~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~-------------~~--~--~~~l~~~~~ilGi~~~ 401 (472)
...+.+.+.+++ +++++++++.+|++|++.+|+|++ .. + +..|+..+.+|||..+
T Consensus 379 ~L~~~~~~v~~a~-~~~ep~~i~~yL~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 379 EALNLKAVLNDAF-EARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSLVALSIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHTHHHHHHHHH-HHTCTTHHHHHHHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 145678888998 899999999999999999999986 01 1 1156667788888654
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.7e-36 Score=316.08 Aligned_cols=251 Identities=19% Similarity=0.179 Sum_probs=193.0
Q ss_pred EcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Q psy14486 29 VCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQ 108 (472)
Q Consensus 29 ~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~ 108 (472)
=-.|||||++||||||++++.+.++| +|++.|+.++||.|++ ++ +..|.+.|.++|++||+.
T Consensus 100 RFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~---R~----------~~e~~~~I~edL~wLGl~ 161 (553)
T 3aii_A 100 RFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR---RV----------DPEAYDMIPADLEWLGVE 161 (553)
T ss_dssp EECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---GC----------CTTHHHHHHHHHHHHTCC
T ss_pred EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---cc----------cHHHHHHHHHHHHHcCCC
Confidence 33699999999999999988666666 5899999999999976 22 458999999999999999
Q ss_pred CCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc----ccCcCccc---CCCcc-------ccccC--
Q psy14486 109 PPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN----FLNYGKLS---GRLIS-------SNFNK-- 172 (472)
Q Consensus 109 ~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~----~~~yg~l~---~~~~~-------~~~~g-- 172 (472)
+|. .+++|+|++.+.+++++|+++|+||. |||+.. +..+|..+ +...+ ++..|
T Consensus 162 wd~-~~~qSdr~~~y~~~~~~Li~~G~AY~----------c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~ 230 (553)
T 3aii_A 162 WDE-TVIQSDRMETYYEYTEKLIERGGAYV----------CTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKE 230 (553)
T ss_dssp CSE-EEEGGGGHHHHHHHHHHHHHTTSEEE----------ECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCT
T ss_pred CCC-CcccccCHHHHHHHHHHHHHcCCcee----------CCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCc
Confidence 986 48999999999999999999999995 677654 23334333 22222 34444
Q ss_pred -----CC--CccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCc---h
Q psy14486 173 -----IN--EKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP---H 242 (472)
Q Consensus 173 -----~v--~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fp---H 242 (472)
|+ +....+.++.||++|+..+.+++. |-..|. ++|+||++| .+|.|.+|++|+++ |
T Consensus 231 g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~---~Gd~~~-g~PtYhfa~----------~vDD~~~GIThviRG~D~ 296 (553)
T 3aii_A 231 GSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPR---TGTRYR-VYPMMNFSV----------AVDDHLLGVTHVLRGKDH 296 (553)
T ss_dssp TSCEEEECCCTTCSSGGGTTCEEEEECCSCBTT---TBTSCC-EEECHHHHH----------HHHHHHTTCCEEEC----
T ss_pred CceEEEEEcccccCCCCCCCcEEEEecCCCCCc---cCCCce-eeeeeeeee----------eeeeccCCCceEeccHhh
Confidence 22 222234467899999986666654 333332 699999999 57888899999999 9
Q ss_pred hHHHHHHH--hhccCCCCceEEEeeeeEEecCccccccCCC---------------ccCHHHHHhh-CChhhHHHHhhhc
Q psy14486 243 HENEIAQS--EGAYKHKFVNYWMHSGFVKINNKKMSKSFGN---------------FCTIRDLLKK-YNPEVIRFFILRS 304 (472)
Q Consensus 243 ~~~~~a~~--~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn---------------~i~~~dll~~-~~~d~lR~~ll~~ 304 (472)
++|.++|. .++.|.++|+|| |+++|+++|+|||||+|| +.|+.++... |.|++||.|+++.
T Consensus 297 ~~nt~~Q~~l~~alG~~~P~y~-H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~ 375 (553)
T 3aii_A 297 LANREKQEYLYRHLGWEPPEFI-HYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEI 375 (553)
T ss_dssp -CHHHHHHHHHHHHTCCCCEEE-CCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHcCCCCCeEE-EeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhc
Confidence 99999997 455588889886 999999999999999998 7899999975 9999999999999
Q ss_pred CC-CCCcccCHHHHHHHHHH
Q psy14486 305 HY-RSTINYSEIYLNYAKKS 323 (472)
Q Consensus 305 ~~-~~~~~fs~~~l~~~~~~ 323 (472)
++ +++.+||++.|.++.+.
T Consensus 376 G~s~~~~~~s~~~L~~~~r~ 395 (553)
T 3aii_A 376 GVKIADSTMSWKKIYGLNRS 395 (553)
T ss_dssp TTCSSCBCCCHHHHHHHHHH
T ss_pred CCCCccccccHHHHHHHHHH
Confidence 88 68999999999988764
No 26
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=1.4e-35 Score=309.14 Aligned_cols=250 Identities=17% Similarity=0.152 Sum_probs=205.9
Q ss_pred EcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Q psy14486 29 VCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQ 108 (472)
Q Consensus 29 ~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~ 108 (472)
=.+|+|||++||||||++++.+.++| +|.+.|+.++||.|+. ..+..|.+.|.++|++||+.
T Consensus 30 RFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~-------------R~~~e~~~~I~edL~wLGl~ 91 (553)
T 1qtq_A 30 RFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV-------------KEDIEYVESIKNDVEWLGFH 91 (553)
T ss_dssp EECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHTTCC
T ss_pred EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch-------------hcCHHHHHHHHHHHHHcCCC
Confidence 35899999999999999998777777 4889999999999963 24669999999999999999
Q ss_pred CCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc----c----cCcCccc---CCCc-------cccc
Q psy14486 109 PPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN----F----LNYGKLS---GRLI-------SSNF 170 (472)
Q Consensus 109 ~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~----~----~~yg~l~---~~~~-------~~~~ 170 (472)
+|...+++|+|++.+.+++++|+++|+||. |||+.. + ..+|..+ .+.. +++.
T Consensus 92 wde~~~~qSer~~~~~~~a~~Li~~G~AY~----------c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~ 161 (553)
T 1qtq_A 92 WSGNVRYSSDYFDQLHAYAIELINKGLAYV----------DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMR 161 (553)
T ss_dssp CSSSCEEGGGGHHHHHHHHHHHHHTTSEEE----------ECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHH
T ss_pred CCCCCeehcccHHHHHHHHHHHHHCCCcee----------cCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHh
Confidence 988778999999999999999999999995 677653 1 1234433 1122 2344
Q ss_pred cC---------C--CCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCc
Q psy14486 171 NK---------I--NEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239 (472)
Q Consensus 171 ~g---------~--v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~ 239 (472)
+| | ++....+.++.||++|+..+++.+. |.++| .++|+||+.| .+|.|.+|++|+
T Consensus 162 ~G~~~~g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~---~~d~w-~g~PtY~la~----------vvDDh~~GITHv 227 (553)
T 1qtq_A 162 AGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQ---TGNKW-CIYPMYDFTH----------CISDALEGITHS 227 (553)
T ss_dssp TTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTT---TBTSC-SEEECHHHHH----------HHHHHHTTCSEE
T ss_pred CCCccCCceEEEEecccccCCCCCCCcEEEEecCCCCCc---cCCCC-cccccccccc----------EEEeccCCcceE
Confidence 43 1 3344456778899999988888777 99999 7899999888 589999999999
Q ss_pred C---chhHHHHHHH---hhccCCC-CceEEEeeeeEEecCccccccCCC---------------ccCHHHHHhh-CChhh
Q psy14486 240 F---PHHENEIAQS---EGAYKHK-FVNYWMHSGFVKINNKKMSKSFGN---------------FCTIRDLLKK-YNPEV 296 (472)
Q Consensus 240 f---pH~~~~~a~~---~a~~g~~-~~~~~~h~g~l~~~G~KMSKS~Gn---------------~i~~~dll~~-~~~d~ 296 (472)
+ +|+.|.++|. .|+ |.+ +|++| |+++|+++|+|||||+|| ++|+.++.+. |.|++
T Consensus 228 iRg~e~~~n~~~q~~l~~al-g~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeA 305 (553)
T 1qtq_A 228 LCTLEFQDNRRLYDWVLDNI-TIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAAS 305 (553)
T ss_dssp EEEGGGTTTHHHHHHHHHTS-CCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHH
T ss_pred eeccchhhhHHHHHHHHHHc-CCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHH
Confidence 9 9999999998 555 666 68887 889999999999999997 7899999975 99999
Q ss_pred HHHHhhhcCCCCCcc-cCHHHHHHHHH
Q psy14486 297 IRFFILRSHYRSTIN-YSEIYLNYAKK 322 (472)
Q Consensus 297 lR~~ll~~~~~~~~~-fs~~~l~~~~~ 322 (472)
||.|+++.++....+ +++..|++..+
T Consensus 306 irnfl~~lG~s~~~~~~e~~~le~~~~ 332 (553)
T 1qtq_A 306 IREFCKRIGVTKQDNTIEMASLESCIR 332 (553)
T ss_dssp HHHHHHHHCCCSSCCCBCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCccccchhhHHHHHH
Confidence 999999998876555 78888887665
No 27
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=1.5e-34 Score=313.15 Aligned_cols=257 Identities=17% Similarity=0.136 Sum_probs=207.5
Q ss_pred CCceEEEEc--CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy14486 22 PGKVSLYVC--GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQ 99 (472)
Q Consensus 22 ~~~v~~y~c--gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~ 99 (472)
+|++..++| +|+|||++||||||++++.+.++|. |.+.|+.+|||.|++ + -+..|.+.|+
T Consensus 61 ~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~-----~gG~fiLRIEDTD~~---R----------~~~e~~~~Il 122 (851)
T 2hz7_A 61 AGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQ-----YGGQFNLRMDDTNPE---L----------ARQEYVDSIA 122 (851)
T ss_dssp TTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCTT---T----------CCHHHHHHHH
T ss_pred cCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEECcCCcc---c----------ccHHHHHHHH
Confidence 456666777 9999999999999999987777764 899999999999976 2 1569999999
Q ss_pred HHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc--------ccCcCcccC-C--Cc--
Q psy14486 100 EDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN--------FLNYGKLSG-R--LI-- 166 (472)
Q Consensus 100 ~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~--------~~~yg~l~~-~--~~-- 166 (472)
++|++|||.+|...+++|+|++.+.+++++|+++|+||. |||+.. ...+|..|. + ..
T Consensus 123 edL~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~----------c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee 192 (851)
T 2hz7_A 123 DDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYV----------ESVSPEELSRLRGNATTPGTPSPYRDRSVEE 192 (851)
T ss_dssp HHHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEE----------ECSCHHHHHHHHCBTTBCCCCCTTTTCCHHH
T ss_pred HHHHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEe----------ecCCHHHHHHHhcchhccCCCcccccCCHHH
Confidence 999999999988778999999999999999999999995 677653 112454431 1 12
Q ss_pred -----cccccC---------C--CCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCce
Q psy14486 167 -----SSNFNK---------I--NEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFD 230 (472)
Q Consensus 167 -----~~~~~g---------~--v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~d 230 (472)
+++..| | ++....+.++.||++|+....+.+. |.++| .++|+||++|+ +|
T Consensus 193 ~l~~fe~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~---~gd~w-~g~PtYhfA~v----------VD 258 (851)
T 2hz7_A 193 NLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFR---TSDEW-HIYPAYDFEHP----------LQ 258 (851)
T ss_dssp HHHHHHHHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTT---TBTSC-SEEECHHHHHH----------HH
T ss_pred HhhHHHHHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCc---cCCCC-ccccccceeeE----------ee
Confidence 234433 2 3444456778899999988777777 99999 78999999995 67
Q ss_pred EeeeccCCcCc---hhHHHHHHH---hhccCCCC-ceEEEeeeeEEecCccccccCCC---------------ccCHHHH
Q psy14486 231 IHGGGQDLKFP---HHENEIAQS---EGAYKHKF-VNYWMHSGFVKINNKKMSKSFGN---------------FCTIRDL 288 (472)
Q Consensus 231 ih~~G~Dl~fp---H~~~~~a~~---~a~~g~~~-~~~~~h~g~l~~~G~KMSKS~Gn---------------~i~~~dl 288 (472)
.|.+|++|+++ |+.|.++|. .|+ |.+. |++| |+++|+++|.|||||+|| ++++.++
T Consensus 259 D~~~GITHViRG~D~~~n~~~q~~l~~al-G~~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~l 336 (851)
T 2hz7_A 259 DAIEGVTHSMCSLEFVDNRAIYDWLMEKL-NFDPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQ 336 (851)
T ss_dssp HHHHTCSEEEEEGGGTTTHHHHHHHHHHT-TCSSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHH
T ss_pred eccCCcceeecchhhhhChHHHHHHHHHc-CCCCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchhHHHHH
Confidence 88888888888 899999987 555 6775 8777 779999999999999987 6789999
Q ss_pred Hhh-CChhhHHHHhhhcCCCCCc-ccCHHHHHHHHH
Q psy14486 289 LKK-YNPEVIRFFILRSHYRSTI-NYSEIYLNYAKK 322 (472)
Q Consensus 289 l~~-~~~d~lR~~ll~~~~~~~~-~fs~~~l~~~~~ 322 (472)
.+. |.|++||.|+++.++...- .+++..++...+
T Consensus 337 r~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~r 372 (851)
T 2hz7_A 337 RRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVR 372 (851)
T ss_dssp HHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHHH
Confidence 965 9999999999999877543 478888886554
No 28
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.96 E-value=9.5e-31 Score=272.82 Aligned_cols=238 Identities=16% Similarity=0.117 Sum_probs=180.1
Q ss_pred cCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Q psy14486 30 CGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQP 109 (472)
Q Consensus 30 cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~ 109 (472)
-.|+|||++||||+|++++..+++| ++.+.|+.+|+|.|+. + ....|.+.|.++|++|||.+
T Consensus 6 FAPSPtG~lHiG~artal~n~l~Ar-----~~~G~filRieDtD~~---R----------~~~~~~~~i~~dL~wLGl~w 67 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVFNWLYAR-----HRGGKFILRIEDTDRE---R----------SRPEYTENILEGLQWLGLTW 67 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCSSS---S----------CCHHHHHHHHHHHHHTTCCC
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeCCcc---c----------cchHHHHHHHHHHHHcCCCC
Confidence 3699999999999999988655555 4889999999999952 1 13589999999999999999
Q ss_pred CCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEeccc-----------------ccC-cCcccCCCc-cccc
Q psy14486 110 PDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRN-----------------FLN-YGKLSGRLI-SSNF 170 (472)
Q Consensus 110 d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~-----------------~~~-yg~l~~~~~-~~~~ 170 (472)
|.-.+++|++.+.+++++++|+++|+||. |||+.. ++. |..++..+. +.+.
T Consensus 68 de~~~~QS~r~~~y~~~~~~Li~~G~AY~----------c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~ 137 (492)
T 2cfo_A 68 DEGPYFQSDRLDLYRQAIQTLLDKGLAYY----------CYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEA 137 (492)
T ss_dssp SEEEEEGGGCHHHHHHHHHHHHHTTSEEE----------ECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHH
T ss_pred CCCCccccCCHHHHHHHHHHHHHCCCceE----------ecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHh
Confidence 98557999999999999999999999994 777652 222 444443211 1222
Q ss_pred cC-----CCCcc----------------ccccCc-cccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCC
Q psy14486 171 NK-----INEKN----------------NFKKDP-LDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSH 228 (472)
Q Consensus 171 ~g-----~v~~~----------------~~k~~~-~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~ 228 (472)
+| |+... ..+.++ .||++||..+ +| |.|+|+||++|+
T Consensus 138 ~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~----------~p-~~G~PtY~la~v---------- 196 (492)
T 2cfo_A 138 AGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP----------RG-EIGYPLYNLVVV---------- 196 (492)
T ss_dssp TTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC----------TT-SCCCBCHHHHHH----------
T ss_pred CCCCceEEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC----------CC-CCCceeehhhhh----------
Confidence 23 11111 123456 7999998631 45 689999999995
Q ss_pred ceEeeeccCCcCc---hhHHHHHHHh--hccCCCCceEEEeeeeE-EecCccccccCCCccCHHHHHh-hCChhhHHHHh
Q psy14486 229 FDIHGGGQDLKFP---HHENEIAQSE--GAYKHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFI 301 (472)
Q Consensus 229 ~dih~~G~Dl~fp---H~~~~~a~~~--a~~g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~l 301 (472)
+|.|.+|++|+++ |+.|.+.|.. .+.|.+.| .|.|..++ +.+|+|||||.||+ ++.++.+ .|.|++||.|+
T Consensus 197 vDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l 274 (492)
T 2cfo_A 197 VDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPP-NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYM 274 (492)
T ss_dssp HHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCC-EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHH
T ss_pred hhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCc-eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHH
Confidence 7888889998888 8999988875 33477777 56888885 68999999999996 8999997 59999999999
Q ss_pred hhcCCCC----CcccCHHHHH
Q psy14486 302 LRSHYRS----TINYSEIYLN 318 (472)
Q Consensus 302 l~~~~~~----~~~fs~~~l~ 318 (472)
+...+.. .--||.+.+.
T Consensus 275 ~~lG~s~~~~~~e~~~~~e~i 295 (492)
T 2cfo_A 275 TLLGWSPPEGVGELFTLDLAA 295 (492)
T ss_dssp HHTTBCCCTTTCSCCCHHHHH
T ss_pred HHhCCCCCCccccccCHHHHH
Confidence 9864332 2346665553
No 29
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.95 E-value=1.8e-28 Score=240.57 Aligned_cols=213 Identities=14% Similarity=0.099 Sum_probs=144.4
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|||++||||+|+++ .++|.++++.+.|+.+|+|.|++ ++ .+.|.+.|.++|++|||.+|
T Consensus 11 APsPtG~LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~~---R~----------~~~~~~~I~~dL~~LGl~~D 72 (298)
T 1nzj_A 11 APSPSGELHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDPP---RE----------VPGAAETILRQLEHYGLHWD 72 (298)
T ss_dssp CCCTTSCCCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCGG---GS----------CTTHHHHHHHHHHHTTCCCS
T ss_pred CcCCCCCccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCch---hh----------HHHHHHHHHHHHHHcCCCCC
Confidence 69999999999999997 55555555899999999999976 22 15899999999999999999
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCC----ccCCcEEEecccc-cCcCccc---------CCCccccccCCCCc
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNG----KINGDVNYSVRNF-LNYGKLS---------GRLISSNFNKINEK 176 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~----~~~g~v~f~~~~~-~~yg~l~---------~~~~~~~~~g~v~~ 176 (472)
.-.+++|++.+.+++++++|+++|++|.-.-. +..|.+|+.+.+. +.+|+.+ ....+++..|.+..
T Consensus 73 ~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~ 152 (298)
T 1nzj_A 73 GDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHA 152 (298)
T ss_dssp SCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEEC
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCccccc
Confidence 86679999999999999999999999962000 0013345544333 3445433 11123343342221
Q ss_pred cccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHh--hcc
Q psy14486 177 NNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSE--GAY 254 (472)
Q Consensus 177 ~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~--a~~ 254 (472)
. .+.+..||++||. .|+|+||++|++ .....|.+.+|+ |.|+ +.|.+.|.. .+.
T Consensus 153 ~-~~~~~~D~VL~R~----------------dG~PtY~la~vv-dD~~~giThvIr--G~D~----l~~t~~q~~l~~al 208 (298)
T 1nzj_A 153 D-EKLAREDFIIHRR----------------DGLFAYNLAVVV-DDHFQGVTEIVR--GADL----IEPTVRQISLYQLF 208 (298)
T ss_dssp C-HHHHHSCCEEECT----------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGGG----HHHHHHHHHHHHHH
T ss_pred C-cccCCCCEEEECC----------------CCCEeeeeeeee-EHHhcCCCEEEe--Cccc----cccHHHHHHHHHHc
Confidence 1 2345679999874 357889999987 677788888888 9995 588888876 445
Q ss_pred CCCCceEEEeeeeE-EecCccccccCCCccCHHH
Q psy14486 255 KHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRD 287 (472)
Q Consensus 255 g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~d 287 (472)
|.+.|+| +|.++| +.+|+|||||.||+ ++++
T Consensus 209 G~~~p~~-~H~pll~~~~g~KLSKR~g~~-~v~~ 240 (298)
T 1nzj_A 209 GWKVPDY-IHLPLALNPQGAKLSKQNHAP-ALPK 240 (298)
T ss_dssp TCCCCEE-EEECBCCC--------------CCCS
T ss_pred CCCCCeE-EEeeeeECCCCCcccccCCcc-Chhc
Confidence 8888887 788887 68999999999996 5544
No 30
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.86 E-value=3.2e-21 Score=200.94 Aligned_cols=230 Identities=16% Similarity=0.179 Sum_probs=158.1
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
.|.+.-++|+|+|++||||+|++++.|+++|. ..| .++..++|.|. ......+.+.+.++|+
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G---~~iLRieDtD~-------------~r~~~~~~~~I~~~l~ 73 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKG---KFILRIEDTDL-------------ERSEREYEEKLMESLR 73 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTC---EEEECBCCSSC-------------CSGGGHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCC---eEEEEEecCCc-------------cccHHHHHHHHHHHHH
Confidence 46677889999999999999999999999999 444 68888999983 2334578888999999
Q ss_pred HhCCCCCCc--------cccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------cCcCc-
Q psy14486 104 LLHIQPPDY--------QPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------LNYGK- 160 (472)
Q Consensus 104 ~LgI~~d~~--------~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~~yg~- 160 (472)
+||+.+|.. ..++|++.+.+.+++++|+++|.+|. |||+... +.|..
T Consensus 74 wlGl~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~----------c~ct~eel~~~r~~~~~~g~~~~yd~~ 143 (481)
T 2o5r_A 74 WLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYY----------VYAYPEEIEEMREKLLSEGKAPHYSQE 143 (481)
T ss_dssp HHTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEE----------ECCCSTTTHHHHHHHHHTTCCCCBCGG
T ss_pred HcCCCCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeE----------ecCCHHHHHHHHHHHHhcCCCCCCCCc
Confidence 999999863 14789999999999999999999995 5555431 12221
Q ss_pred ccCCCcc------ccccC-----CCCccc---------------cccCccccccccccCCCCCccccccCCCccCCCCCc
Q psy14486 161 LSGRLIS------SNFNK-----INEKNN---------------FKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWH 214 (472)
Q Consensus 161 l~~~~~~------~~~~g-----~v~~~~---------------~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWh 214 (472)
++.+++. .+.+| |+.... ...+..||++||. .|.|.||
T Consensus 144 ~s~r~l~~~e~~~~~~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs----------------DG~ptY~ 207 (481)
T 2o5r_A 144 MFEKFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRS----------------NGLPTYN 207 (481)
T ss_dssp GGTTTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECT----------------TSCBCHH
T ss_pred hhhhcCCHHHHHHHHhcCCcceEEEEcCCCceEEEecccceeEeccccCCCeEEEcc----------------CCCcchh
Confidence 1122221 01122 111000 0011124444332 3778899
Q ss_pred chhhHhhhhhhCCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeE-EecCccccccCCCccCHHHHHh-hC
Q psy14486 215 IECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLK-KY 292 (472)
Q Consensus 215 iecsam~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~-~~ 292 (472)
+.|+ +.....| ++..+.|.|++ +|+....++.+++ |.+.|. |.|..++ +.+|+|||||.|++ +++++++ .|
T Consensus 208 ~a~v-vDD~~~g--ithvirG~D~~-~~t~~q~~l~~aL-G~~~p~-~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~ 280 (481)
T 2o5r_A 208 FACV-VDDMLME--ITHVIRGDDHL-SNTLRQLALYEAF-EKAPPV-FAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGY 280 (481)
T ss_dssp HHHH-HHHHHTT--CSEEEEEGGGH-HHHHHHHHHHHHT-TCCCCE-EEEECCEECTTSSBCCGGGSCC-BHHHHHHHTC
T ss_pred hHHH-HHHHhCC--CCeEEEChhHH-HhHHHHHHHHHHc-CCCCCe-EEEEeeEECCCCCcccCcCCcc-cHHHHHHCCC
Confidence 8876 2233333 44445799976 6666666666666 666675 5787874 57899999999997 8999997 48
Q ss_pred ChhhHHHHhhhc
Q psy14486 293 NPEVIRFFILRS 304 (472)
Q Consensus 293 ~~d~lR~~ll~~ 304 (472)
.|++++.|+...
T Consensus 281 ~peal~~~l~~l 292 (481)
T 2o5r_A 281 LPEALVNYLALL 292 (481)
T ss_dssp CHHHHHHHHHTS
T ss_pred CHHHHHHHHHHh
Confidence 888888877765
No 31
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.85 E-value=2.2e-21 Score=201.04 Aligned_cols=236 Identities=13% Similarity=0.108 Sum_probs=162.7
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|+++....++|. +...|+..|+|.|.+ .....+.+.+.++|++||+.+|
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~I~~dl~wlGl~wd 68 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWARR-----NGGRFIVRIEDTDRA-------------RYVPGAEERILAALKWLGLSYD 68 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH-----TTCEEEECBCCCCTT-------------SCCTTHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCCc-------------ccChHHHHHHHHHHHHcCCCCC
Confidence 6999999999999999988888886 678899999999954 2244889999999999999999
Q ss_pred Ccc--------ccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------cCcC----cccCCCc-ccc
Q psy14486 111 DYQ--------PCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------LNYG----KLSGRLI-SSN 169 (472)
Q Consensus 111 ~~~--------~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------~~yg----~l~~~~~-~~~ 169 (472)
.-. .++|++.+.+.+++++|+++|+||. |||+... ..|. .++..+. ..+
T Consensus 69 ~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~----------c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~ 138 (468)
T 1j09_A 69 EGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR----------AFETPEELEQIRKEKGGYDGRARNIPPEEAEERA 138 (468)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE----------ECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHH
T ss_pred CCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE----------cCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHH
Confidence 753 5899999999999999999999995 6665431 0122 2221110 011
Q ss_pred ccC-----CCCcc----------------ccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCC
Q psy14486 170 FNK-----INEKN----------------NFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSH 228 (472)
Q Consensus 170 ~~g-----~v~~~----------------~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~ 228 (472)
.+| |+... ....+..||++||. .|.|.||+.|+. .....|
T Consensus 139 ~~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~----------------dg~PtY~~a~vv-DD~~~g-- 199 (468)
T 1j09_A 139 RRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKS----------------DGYPTYHLANVV-DDHLMG-- 199 (468)
T ss_dssp HTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECT----------------TSCBCHHHHHHH-HHHHTT--
T ss_pred hcCCCceEEEecCCCCceEEEeccceeEeecccCCCCeEEEec----------------CCCeeehhHHHH-HHHHCC--
Confidence 122 11000 00112234554442 367889988763 233333
Q ss_pred ceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeE-EecCccccccCCCccCHHHHHh-hCChhhHHHHhhhcCC
Q psy14486 229 FDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRSHY 306 (472)
Q Consensus 229 ~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~ 306 (472)
++..+-|.|++ +|+....++..++ |.+.|.| .|..++ +.+|+|||||.|++ ++.++.+ .|.|++||.|++...+
T Consensus 200 ithvirG~D~~-~~t~~q~~l~~al-g~~~p~~-~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~ 275 (468)
T 1j09_A 200 VTDVIRAEEWL-VSTPIHVLLYRAF-GWEAPRF-YHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGF 275 (468)
T ss_dssp CCEEEEEGGGG-GGHHHHHHHHHHH-TCCCCEE-EEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSC
T ss_pred CCeEEEChhhh-hhHHHHHHHHHHc-CCCCCeE-EEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhcc
Confidence 33334499964 4555555555665 6666765 566664 57999999999997 8999987 5999999999988644
Q ss_pred CC---CcccCHHHH
Q psy14486 307 RS---TINYSEIYL 317 (472)
Q Consensus 307 ~~---~~~fs~~~l 317 (472)
.. ...|+.+.+
T Consensus 276 ~~~~~~~~~~~~el 289 (468)
T 1j09_A 276 SMPDGREIFTLEEF 289 (468)
T ss_dssp CCTTCCSCCCHHHH
T ss_pred CCcccccCCCHHHH
Confidence 32 245776665
No 32
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.83 E-value=8.1e-20 Score=190.10 Aligned_cols=235 Identities=14% Similarity=0.106 Sum_probs=158.5
Q ss_pred cCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Q psy14486 30 CGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQP 109 (472)
Q Consensus 30 cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~ 109 (472)
-.|+|+|++||||+|+++....++|. +...|+..|+|.|.+ .....+.+.|.++|++|||.+
T Consensus 30 FAPsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~w 91 (488)
T 3afh_A 30 FAPSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESLRWCGLDW 91 (488)
T ss_dssp ECCCCSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCTT-------------TCCHHHHHHHHHHHHHTTCCC
T ss_pred ECCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEEeeCCcc-------------cccHHHHHHHHHHHHHcCCCC
Confidence 46999999999999999988888887 678999999999954 234588999999999999999
Q ss_pred CCc--------cccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc------cCcCccc-----CC------
Q psy14486 110 PDY--------QPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF------LNYGKLS-----GR------ 164 (472)
Q Consensus 110 d~~--------~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~------~~yg~l~-----~~------ 164 (472)
|.- ..++|++.+.+.+++++|+++|++|. |||+... +.|..-+ +.
T Consensus 92 De~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~----------c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~ 161 (488)
T 3afh_A 92 DEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY----------VVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKF 161 (488)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE----------EEECSSSTTSEEEEESSCCHHHHHTTCCEEEEE
T ss_pred CcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEe----------cCCCHHHHHhhcCCCCCchhhHHhcCCCceEEE
Confidence 974 13899999999999999999999995 6665432 1121100 00
Q ss_pred -------CccccccCCCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccC
Q psy14486 165 -------LISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQD 237 (472)
Q Consensus 165 -------~~~~~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~D 237 (472)
...++..|++.. ...+..||+++|. .|.|.||+.|.. .....| ++..+-|.|
T Consensus 162 k~~~~~~~~~D~v~G~~~~--~~~~~~D~Vl~R~----------------DG~PtY~lA~vV-DD~~mg--IThViRG~D 220 (488)
T 3afh_A 162 KVLPGKTSFEDLLKGYMEF--DNSTLEDFIIMKS----------------NGFPTYNFAVVV-DDHLMR--ISHVFRGED 220 (488)
T ss_dssp CCCSSEEEEEETTTEEEEE--EGGGSCCEEEECT----------------TSCBCHHHHHHH-HHHHTT--CSEEEEEGG
T ss_pred ECCCCceeEEeccceeEee--cCCCCCCeEEEec----------------CCCeehhhHHHH-HHHhcC--CCEEEEchh
Confidence 001111111100 0112235555553 266778887753 233333 333334999
Q ss_pred CcCchhHHHHHHHhhccCCCCceEEEeeeeE-EecCccccccCCCccCHHHHHh-hCChhhHHHHhhhcCCCC--CcccC
Q psy14486 238 LKFPHHENEIAQSEGAYKHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRSHYRS--TINYS 313 (472)
Q Consensus 238 l~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~~~~--~~~fs 313 (472)
++ +++...+++..++ |.+.|.| .|..++ +.+|+|||||.|+ +++.++.+ .|.|++++.|++...+.. +-.||
T Consensus 221 ~l-~~tp~q~~l~~aL-G~~~P~f-~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s 296 (488)
T 3afh_A 221 HL-SNTPKQLMIYEAF-GWEAPVF-MHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFT 296 (488)
T ss_dssp GG-GGHHHHHHHHHHH-TCCCCEE-EEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCC
T ss_pred hh-hCHHHHHHHHHHc-CCCCCeE-EEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCC
Confidence 64 4444444444554 6676765 666666 5789999999999 68999987 599999999998854322 13455
Q ss_pred HHHH
Q psy14486 314 EIYL 317 (472)
Q Consensus 314 ~~~l 317 (472)
.+.+
T Consensus 297 ~~e~ 300 (488)
T 3afh_A 297 IEEK 300 (488)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 33
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.82 E-value=8.2e-20 Score=189.08 Aligned_cols=250 Identities=16% Similarity=0.171 Sum_probs=155.0
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|+++..++++|. +...|+.+++|.|++ + ....|.+.|.++|++|||.+|
T Consensus 31 APSPTG~lHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~---R----------~~~~~~~~i~~dl~wlGl~~d 92 (490)
T 4g6z_A 31 APSPTGFIHLGNIRSALYPWAFARK-----MKGTFVLRIEDTDVE---R----------SSQEAVDAILEGMAWLGLDYD 92 (490)
T ss_dssp CCCCCSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCGG---G----------CCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCcc---c----------ccHHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999988888875 788999999999963 1 235899999999999999999
Q ss_pred CccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------cCcCcccCC----CccccccC
Q psy14486 111 DYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------LNYGKLSGR----LISSNFNK 172 (472)
Q Consensus 111 ~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~~yg~l~~~----~~~~~~~g 172 (472)
....++|++.+.+++++++|+++|++|. |||.... +.|..-|.. .......|
T Consensus 93 ~~~~~qS~r~~~y~~~~~~Li~~G~aY~----------C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g 162 (490)
T 4g6z_A 93 EGPYYQMQRMDRYREVLAQMQEKGLVYP----------CYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAG 162 (490)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTSEEE----------ECC-------------------CCCCTTCCCTTCCCCCCCTT
T ss_pred CCCcccccCHHHHHHHHHHHHHCCCEEe----------CCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcC
Confidence 7656999999999999999999999995 6666532 122222211 00011111
Q ss_pred CCCccccccCcc-ccccccccCCCCCcccccc-CCC-------ccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCchh
Q psy14486 173 INEKNNFKKDPL-DFALWKVSKNNDPYEIRWN-SKW-------GAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHH 243 (472)
Q Consensus 173 ~v~~~~~k~~~~-df~lwk~~~~g~~~~~~w~-~~w-------G~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fpH~ 243 (472)
+-.....| .|. .-..|.....|+.. ++ ... ..|.|.+|+.|.. -....| ++-.+-|.|++ +.+
T Consensus 163 ~~~~~R~k-~~~~~~~~~~D~i~G~~~---~~~~~~~D~Vl~R~DG~ptY~lA~vV-DD~~mg--IThViRG~D~l-~~t 234 (490)
T 4g6z_A 163 VAPVLRFR-NPLTGTVAWDDAVKGRVE---ISNEELDDLVVARPDGTPMYNFCVVV-DDLDMG--ITHVIRGDDHV-NNT 234 (490)
T ss_dssp CCCEEEEC-CCCSSEEEEEETTTEEEE---EEGGGCCCCEEECTTSCBCHHHHHHH-HHHHTT--CCEEEEEGGGG-GGH
T ss_pred CCceEEEe-cCCCCcEEEEEeeeeeee---eccccCCCeEEEeeCCCccchhHHHH-HHHhcC--CCEEEeccccc-cCh
Confidence 00000000 000 00111111111110 00 001 2356777776532 122222 33233399965 333
Q ss_pred HHHHHHHhhccCCCCceEEEeeeeE-EecCccccccCCCccCHHHHHh-hCChhhHHHHhhhc--CCCCCcccCHHHHHH
Q psy14486 244 ENEIAQSEGAYKHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRS--HYRSTINYSEIYLNY 319 (472)
Q Consensus 244 ~~~~a~~~a~~g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~--~~~~~~~fs~~~l~~ 319 (472)
...+.+..|+ |.+.|.| .|..++ ..+|+||||+.|. +++.++.+ .|.|++++-|++.. +....--||.+.+.+
T Consensus 235 prq~~l~~aL-G~~~P~f-~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~ 311 (490)
T 4g6z_A 235 PRQINILRAL-GGEVPVY-AHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVE 311 (490)
T ss_dssp HHHHHHHHHT-TCCCCEE-EEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHH
T ss_pred HHHHHHHHHc-CCCCCeE-EEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHHh
Confidence 3334444554 7777876 555555 4689999999997 78999885 59999999999885 333334478776643
No 34
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.82 E-value=2.2e-20 Score=198.65 Aligned_cols=228 Identities=14% Similarity=0.109 Sum_probs=156.8
Q ss_pred ceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy14486 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL 103 (472)
Q Consensus 24 ~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 103 (472)
+|.+=.+ |+|+|++||||+|+++..++++|. |...|+..|+|.|.. .-...+.+.+.++|+
T Consensus 129 ~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~-----~~G~~ilRieDtD~~-------------r~~~~~~~~I~~dL~ 189 (592)
T 3al0_C 129 LVRVRFA-PSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESLR 189 (592)
T ss_dssp CCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCSS-------------SCCHHHHHHHHHHHH
T ss_pred eEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh-----cCCcEEEEecCcChh-------------hccHHHHHHHHHHHH
Confidence 4555445 999999999999999999999997 677899999998832 234588999999999
Q ss_pred HhCCCCCCc--------cccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc------cCcCccc-----C-
Q psy14486 104 LLHIQPPDY--------QPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF------LNYGKLS-----G- 163 (472)
Q Consensus 104 ~LgI~~d~~--------~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~------~~yg~l~-----~- 163 (472)
+|||.+|.- ..++|++.+.+.+++++|+++|++|. |||+... +.|..-+ +
T Consensus 190 wlGl~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~----------c~ct~~el~~~~~~~Y~~~~~~~~~g~ 259 (592)
T 3al0_C 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY----------VVYDKEDPSKELFTTYEYPHEYKEKGH 259 (592)
T ss_dssp HTTCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEE----------EEEETTEEEEECCCCSSCCHHHHHTTC
T ss_pred HcCCCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceE----------ecCCHHHHHhhcCCCCCcHHHHhhcCC
Confidence 999999873 13899999999999999999999996 5665431 1121100 0
Q ss_pred ------------CCccccccCCCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceE
Q psy14486 164 ------------RLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDI 231 (472)
Q Consensus 164 ------------~~~~~~~~g~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~di 231 (472)
....++..|++.. ...+..||++||. .|.|.||+.|.. .....|. +.
T Consensus 260 ~~~iR~k~~~~~~~~~D~v~G~~~~--~~~~~~D~Vl~R~----------------dg~ptY~~a~vv-DD~~~gi--th 318 (592)
T 3al0_C 260 PVTIKFKVLPGKTSFEDLLKGYMEF--DNSTLEDFIIMKS----------------NGFPTYNFAVVV-DDHLMRI--SH 318 (592)
T ss_dssp CEEEEECCCSSCCEECCTTTCSEEC--CSSSSCCEEEECT----------------TSCCCHHHHHHH-HHHHTTC--SB
T ss_pred CceEEEECCCCCceeeecccceeee--ccccCCCeEEEcC----------------CCCeehhhHHHH-HHHhcCC--Ce
Confidence 0011112221110 1122346666553 266779988752 2333333 22
Q ss_pred eeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeE-EecCccccccCCCccCHHHHHh-hCChhhHHHHhhhcC
Q psy14486 232 HGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRSH 305 (472)
Q Consensus 232 h~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~~ 305 (472)
.+-|.|++ +|+....++..++ |.+.|.| .|..++ +.+|+|||||.|+ +++.++.+ .|.|+++|.|++...
T Consensus 319 virG~D~~-~~t~~q~~l~~al-g~~~P~~-~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG 390 (592)
T 3al0_C 319 VFRGEDHL-SNTPKQLMIYEAF-GWEAPVF-MHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 390 (592)
T ss_dssp CCEEGGGG-GGHHHHHHHHTTT-TCCCCBC-CEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTT
T ss_pred EEEchhhH-hCHHHHHHHHHHh-CCCCCeE-EEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 23488864 4444445555555 6666765 565665 5789999999999 69999997 599999999998853
No 35
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.76 E-value=6.5e-18 Score=175.82 Aligned_cols=239 Identities=15% Similarity=0.123 Sum_probs=152.7
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||+|+++....++|. +.-.|+..|+|.|. ......+.+.+.++|++||+.+|
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~-----~gG~fiLRieDtD~-------------~R~~~~~~~~I~~~L~wlGl~wD 73 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARH-----TGGTFVFRIEDTDA-------------QRDSEESYLALLDALRWLGLDWD 73 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCT-------------TTCCHHHHHHHHHHHHHHTCCCS
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEECcCCC-------------cccChHHHHHHHHHHHHcCCCcC
Confidence 4999999999999999999999997 45689999999984 33445889999999999999999
Q ss_pred C--------ccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc-------------cCcCcccCC-Cccc
Q psy14486 111 D--------YQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF-------------LNYGKLSGR-LISS 168 (472)
Q Consensus 111 ~--------~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~-------------~~yg~l~~~-~~~~ 168 (472)
. -..++|++.+.+.+++++|+++|.+|. |||+... +.|..-|.. ..++
T Consensus 74 egp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY~----------c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e 143 (498)
T 2ja2_A 74 EGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYH----------AFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQ 143 (498)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE----------ECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHH
T ss_pred CCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeEE----------eCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHH
Confidence 7 235899999999999999999999995 6776431 223332221 1111
Q ss_pred ----cccCCCCccccccCccccccccccCCCCCc-----cccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCc
Q psy14486 169 ----NFNKINEKNNFKKDPLDFALWKVSKNNDPY-----EIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239 (472)
Q Consensus 169 ----~~~g~v~~~~~k~~~~df~lwk~~~~g~~~-----~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~ 239 (472)
...|+-.+-..| .|..-..|.....|... ...|-.-=..|.|.+|+.|.. ..... .++..+-|.|++
T Consensus 144 ~~~~~~~g~~~~iR~k-~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vV-DD~~m--githviRG~D~~ 219 (498)
T 2ja2_A 144 RAAYLAEGRQPVVRLR-MPDDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPC-DDALM--KITHVLRGEDLL 219 (498)
T ss_dssp HHHHHHTTCCCEEEEC-CCSSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHH-HHHHT--TCCEEEEEGGGG
T ss_pred HHhhhccCCCceEEEE-CCCCceEEEecccceEeecccccCcceeEccCCCcchhhHHHH-Hhhhc--CCCEEEEChhhh
Confidence 111200000000 00000111111111000 000000012366777766542 12222 344444699976
Q ss_pred CchhHHHHHHHhhcc----CCCCceEEEeeeeE-EecCccccccCCCccCHHHHHh-hCChhhHHHHhhhc
Q psy14486 240 FPHHENEIAQSEGAY----KHKFVNYWMHSGFV-KINNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRS 304 (472)
Q Consensus 240 fpH~~~~~a~~~a~~----g~~~~~~~~h~g~l-~~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~ 304 (472)
+++...+++..++. |.+.|.| .|..++ +.+|+|||||.|+ ++++++.+ .|.|+++|.|++..
T Consensus 220 -~~t~~q~~l~~aL~~~g~g~~~P~~-~h~plil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 220 -PSTPRQLALHQALIRIGVAERIPKF-AHLPTVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp -GGHHHHHHHHHHHHHTTSCCCCCEE-EEECCEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTS
T ss_pred -hccHHHHHHHHHHHhhcCCCCCCeE-EEeeeeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHh
Confidence 55555555656651 6666766 455554 5899999999999 58999987 59999999999885
No 36
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.74 E-value=1.3e-17 Score=175.40 Aligned_cols=254 Identities=17% Similarity=0.121 Sum_probs=158.0
Q ss_pred CCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Q psy14486 31 GITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPP 110 (472)
Q Consensus 31 gPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d 110 (472)
.|+|+|++||||||++++...++|. +.-.|+..|+|.|.. .....|.+.|.++|++|||.+|
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~-----~~G~fiLRieDtD~~-------------R~~~~~~~~I~~~L~wlGl~wD 91 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKS-----CGGKFLLRIEDTDQS-------------RYSPEAENDLYSSLKWLGISFD 91 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH-----TTCEEEECBCCCCTT-------------SCCHHHHHHHHHHHHHHTCCCS
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCCC-------------cCCHHHHHHHHHHHHHcCCCCC
Confidence 6999999999999999999999987 677999999999943 2335889999999999999998
Q ss_pred Cc--------cccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccc--------------cCcCcccCC-Ccc
Q psy14486 111 DY--------QPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--------------LNYGKLSGR-LIS 167 (472)
Q Consensus 111 ~~--------~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~--------------~~yg~l~~~-~~~ 167 (472)
.- ..++|++.+.+.+++++|+++|.||. |||.... +.|..-|.. ..+
T Consensus 92 e~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~----------C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~ 161 (512)
T 4gri_A 92 EGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY----------CYCSPERLERIKKIQNINKMPPGYDRHCRNLSNE 161 (512)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE----------ECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHH
T ss_pred cCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc----------cccchHHHHHHHHhhhccCCCCccchhhcccchh
Confidence 53 12788999999999999999999995 7776431 122221111 111
Q ss_pred ccc----cCCCCccccccCccc-cccccccCCCCCccc---cccCCC---ccCCCCCcchhhHhhhhhhCCCceEeeecc
Q psy14486 168 SNF----NKINEKNNFKKDPLD-FALWKVSKNNDPYEI---RWNSKW---GAGRPGWHIECSAMSCYLLGSHFDIHGGGQ 236 (472)
Q Consensus 168 ~~~----~g~v~~~~~k~~~~d-f~lwk~~~~g~~~~~---~w~~~w---G~g~PgWhiecsam~~~~~g~~~dih~~G~ 236 (472)
+.. .|. .....-+.|.+ -..|.....|..... ..+..| ..|.|.+|+.|.. ..... .++..+-|.
T Consensus 162 ~~~~~~~~~~-~~~~R~k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vV-DD~~m--gITHViRG~ 237 (512)
T 4gri_A 162 EVENALIKKI-KPVVRFKIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVV-DDYLM--KITHVLRAQ 237 (512)
T ss_dssp HHHHHHHTTC-CCEEEECCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHH-HHHHT--TCSEEEEEG
T ss_pred hhhhhhhhhc-cceeeecccccCCceeeccccceEEecccccCCceEEEecCCccccccccee-ccccc--CCceecccc
Confidence 111 110 00000000000 001111111111000 000111 2356777776632 12222 333333499
Q ss_pred CCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHh-hCChhhHHHHhhhc--CCCC-Ccc
Q psy14486 237 DLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLK-KYNPEVIRFFILRS--HYRS-TIN 311 (472)
Q Consensus 237 Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~-~~~~d~lR~~ll~~--~~~~-~~~ 311 (472)
|++ +.+...+.+..++ |.+.|.| .|..++. .+|+|+||+.|. .+++++.+ .|-|+++.-|++.- ++.. .--
T Consensus 238 D~l-~sTp~q~~l~~al-g~~~P~y-~H~pli~~~~g~kLSKR~~~-~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Ei 313 (512)
T 4gri_A 238 EWV-SSGPLHVLLYKAF-KWKPPIY-CHLPMVMGNDGQKLSKRHGS-TALRQFIEDGYLPEAIINYVTLLGWSYDDKREF 313 (512)
T ss_dssp GGG-GGHHHHHHHHHHH-TCCCCEE-EEECCCBCTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCC
T ss_pred ccc-cccHHHHHHHHHc-CCCCCeE-EecchhccccccccCccccc-ccHHHHHHcCCChHHHHHHHHHhCCCCcccchh
Confidence 975 4544445555555 7777876 5556554 689999999988 57888876 59999999988774 2322 345
Q ss_pred cCHHHHHHH
Q psy14486 312 YSEIYLNYA 320 (472)
Q Consensus 312 fs~~~l~~~ 320 (472)
||.+.|.+.
T Consensus 314 fs~~eli~~ 322 (512)
T 4gri_A 314 FSKNDLEQF 322 (512)
T ss_dssp CCHHHHHHH
T ss_pred hhHHHHHHH
Confidence 887777553
No 37
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.80 E-value=1.8e-08 Score=99.94 Aligned_cols=69 Identities=25% Similarity=0.319 Sum_probs=52.7
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
..++.++|.|+. +|.+...-....+ |.+.| +.+|+.+|. ++|+|||||.||.|++.| +|+++|..+.+.
T Consensus 170 ~~~~v~~G~DQ~-~~~~l~rdla~~~-~~~~p-~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 170 GVDLAVGGIDQR-KIHMLARENLPRL-GYSSP-VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHGGGG-TCCCC-EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred CCCEEEechhhH-HHHHHHHHHHHhc-CCCCc-eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 678999999997 5766544444443 44434 346667774 899999999999999987 699999999886
No 38
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.45 E-value=2.5e-06 Score=84.82 Aligned_cols=75 Identities=20% Similarity=0.106 Sum_probs=51.4
Q ss_pred hhCCCceEeeeccCCcCchhHHHHHHHhhcc---C--CCCceEE-EeeeeEE-ecCccccccCCCccCHHHHHhhCChhh
Q psy14486 224 LLGSHFDIHGGGQDLKFPHHENEIAQSEGAY---K--HKFVNYW-MHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEV 296 (472)
Q Consensus 224 ~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~---g--~~~~~~~-~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~ 296 (472)
++-...++.++|.|.. +|.+.-.-....++ | .+.|... .|.-+|. ++|.|||||.||.|++.| +|+.
T Consensus 149 il~~~~~~vpvG~DQ~-~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~ 222 (340)
T 2g36_A 149 ILIYKAEGVPVGEDQV-YHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKE 222 (340)
T ss_dssp HHTTTCSEEEECGGGH-HHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHH
T ss_pred HHHhCCCEEEcccchH-HHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC-----CHHH
Confidence 3334678999999998 67765443333322 3 2334433 3344554 789999999999999887 8888
Q ss_pred HHHHhhhc
Q psy14486 297 IRFFILRS 304 (472)
Q Consensus 297 lR~~ll~~ 304 (472)
++=.+.+.
T Consensus 223 i~~Ki~~a 230 (340)
T 2g36_A 223 LEQTILRM 230 (340)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 88877775
No 39
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=98.40 E-value=7e-06 Score=81.58 Aligned_cols=72 Identities=24% Similarity=0.142 Sum_probs=49.2
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhc---cC--CCCceEEEee--eeEE-ecC-ccccccCCCccCHHHHHhhCChhhH
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGA---YK--HKFVNYWMHS--GFVK-INN-KKMSKSFGNFCTIRDLLKKYNPEVI 297 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~---~g--~~~~~~~~h~--g~l~-~~G-~KMSKS~Gn~i~~~dll~~~~~d~l 297 (472)
...++.++|.|.. +|.+.-.-..... +| .+.|...++. -+|. ++| +|||||.||.|++.| +|+.+
T Consensus 140 ~~~~lvp~G~DQ~-~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d-----~p~~i 213 (337)
T 2el7_A 140 YKADTVPVGEDQV-QHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE-----PEESI 213 (337)
T ss_dssp TTCCEEECCGGGC-HHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS-----CHHHH
T ss_pred hCCcEEEcccchH-HHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcC-----CHHHH
Confidence 3678999999998 6776644333322 24 3445543332 3444 789 999999999999876 57777
Q ss_pred HHHhhhc
Q psy14486 298 RFFILRS 304 (472)
Q Consensus 298 R~~ll~~ 304 (472)
+=.+.+.
T Consensus 214 ~~Ki~~a 220 (337)
T 2el7_A 214 WQKIQHL 220 (337)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 7777765
No 40
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.2e-06 Score=88.92 Aligned_cols=70 Identities=19% Similarity=0.094 Sum_probs=40.1
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ec-CccccccCCCc-cCHHHHHhhCChhhHHHHhhh
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-IN-NKKMSKSFGNF-CTIRDLLKKYNPEVIRFFILR 303 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~-G~KMSKS~Gn~-i~~~dll~~~~~d~lR~~ll~ 303 (472)
...++.++|.|+. +|.+.-.-....+ |.+.|.. +|+-+|. ++ |+|||||.||. |++.| +|+.++=-+.+
T Consensus 181 ~~~~~v~~G~DQ~-~~~~l~rdl~~r~-~~~~p~~-l~~pll~gl~~G~KMSKS~~ns~I~L~D-----~p~~i~kKI~k 252 (394)
T 2dlc_X 181 LDVDCQFGGVDQR-KIFVLAEENLPSL-GYKKRAH-LMNPMVPGLAQGGKMSASDPNSKIDLLE-----EPKQVKKKINS 252 (394)
T ss_dssp TTCSEEEEEGGGH-HHHHHHHHHGGGG-TCCCCEE-EEECCCCCCC----------CCSCBTTC-----CHHHHHHHHHH
T ss_pred hCCCEEecCccHH-HHHHHHHHHHHHc-CCCCCEE-EecccccCCCCCCcCCCCCCCCEEeccC-----CHHHHHHHHHH
Confidence 3678999999987 6666555554444 4444544 5556654 78 99999999996 98876 56777766665
Q ss_pred c
Q psy14486 304 S 304 (472)
Q Consensus 304 ~ 304 (472)
.
T Consensus 253 a 253 (394)
T 2dlc_X 253 A 253 (394)
T ss_dssp S
T ss_pred h
Confidence 3
No 41
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=98.14 E-value=2.1e-06 Score=86.49 Aligned_cols=69 Identities=16% Similarity=0.071 Sum_probs=42.6
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCC-ccCHHHHHhhCChhhHHHHhhhc
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGN-FCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn-~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
..++.++|.|+. +|.+.-.-....+ |.+.|. .+|..+|. ++|+|||||.|| .|++.| +|+.++=.+.++
T Consensus 178 ~a~~v~~G~DQ~-~~~~l~rdl~~r~-~~~~p~-~l~~pll~gldG~KMSKS~~ns~I~L~d-----~p~~i~kKi~~A 248 (372)
T 1n3l_A 178 KVDAQFGGIDQR-KIFTFAEKYLPAL-GYSKRV-HLMNPMVPGLTGSKMSSSEEESKIDLLD-----RKEDVKKKLKKA 248 (372)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHGGGG-TCCCCE-EEEECCCCCSSCC-------CCSCBTTC-----CHHHHHHHHHTC
T ss_pred cCCEEEcChhHH-HHHHHHHHHHHHc-CCCCCE-EEecCccCCCCcccccCCCCCCeEeccC-----CHHHHHHHHHHc
Confidence 568999999987 6766555444444 444443 35556654 899999999999 798876 488888777763
No 42
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=98.12 E-value=4.8e-05 Score=75.28 Aligned_cols=75 Identities=27% Similarity=0.157 Sum_probs=46.9
Q ss_pred hhhCCCceEeeeccCCcCchhHHHHHHHhhcc---C--CCCceEEE--eeeeE-EecC--ccccccCCC-c--cCHHHHH
Q psy14486 223 YLLGSHFDIHGGGQDLKFPHHENEIAQSEGAY---K--HKFVNYWM--HSGFV-KINN--KKMSKSFGN-F--CTIRDLL 289 (472)
Q Consensus 223 ~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~---g--~~~~~~~~--h~g~l-~~~G--~KMSKS~Gn-~--i~~~dll 289 (472)
.++-...++.++|.|.. +|.+.-.-+...++ | .+.|...+ +.-+| .++| +|||||.|| . |++.|
T Consensus 132 Dil~~~~~~vpvG~DQ~-~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d-- 208 (328)
T 1i6k_A 132 DILLYNTDIVPVGEDQK-QHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD-- 208 (328)
T ss_dssp HHHTTTCSEEECCGGGH-HHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC--
T ss_pred HHHHhCCCEEecccchH-HHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecC--
Confidence 33334689999999998 67765443333322 3 33454443 23344 3788 899999999 6 88765
Q ss_pred hhCChhhHHHHhhh
Q psy14486 290 KKYNPEVIRFFILR 303 (472)
Q Consensus 290 ~~~~~d~lR~~ll~ 303 (472)
+|+.++==+.+
T Consensus 209 ---~~~~i~~KI~~ 219 (328)
T 1i6k_A 209 ---DAKTIEKKIKS 219 (328)
T ss_dssp ---CHHHHHHHHHH
T ss_pred ---CHHHHHHHHHh
Confidence 55555555554
No 43
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=98.02 E-value=3.2e-05 Score=77.91 Aligned_cols=67 Identities=10% Similarity=-0.079 Sum_probs=44.5
Q ss_pred ceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCc-ccccc-CCCccCHHHHHhhCChhhHHHHhhh
Q psy14486 229 FDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNK-KMSKS-FGNFCTIRDLLKKYNPEVIRFFILR 303 (472)
Q Consensus 229 ~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~-KMSKS-~Gn~i~~~dll~~~~~d~lR~~ll~ 303 (472)
-++..+|.|.. ||.+.-.-...-+ |.+.| ..+++-+|. ++|. ||||| .+|.|++.| +|+.++=-+.+
T Consensus 225 a~~VpvG~DQ~-~hl~l~Rdla~r~-n~~~p-~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D-----~p~~i~kKI~k 294 (386)
T 3hzr_A 225 RCLVLDSIKNV-QFHSIIDQIATTL-NFIQP-TVLFHKMVPLLSGVTKFDIPSDHNSILLSD-----NAKQVERKINK 294 (386)
T ss_dssp EEEEEEEGGGH-HHHHHHHHHHHHH-TCCCC-EEEEECCCCCTTCTTCCCCCCTTTSCBTTC-----CHHHHHHHHHH
T ss_pred ccccccccchH-HHHHHHHHHHHHc-CCCCc-eEeecCeeeCCCCCCccCcCCCCCeeecCC-----CHHHHHHHHHH
Confidence 45556699987 6766544443333 43444 345656665 7885 99999 899998876 67777665555
No 44
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=98.01 E-value=1.8e-05 Score=79.41 Aligned_cols=70 Identities=26% Similarity=0.228 Sum_probs=48.4
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ec-----------------Ccccccc-CCCccCHHH
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-IN-----------------NKKMSKS-FGNFCTIRD 287 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~-----------------G~KMSKS-~Gn~i~~~d 287 (472)
...++.++|.|.. +|++.-.-....+ |.+.|. .+|+.+|. ++ |+||||| .+|.|++.|
T Consensus 176 ~~~~~v~~G~DQ~-~~~~l~rdla~r~-~~~~p~-~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d 252 (364)
T 2cya_A 176 MDLDIALGGMDQR-KAHMLARDVAEKL-GRKKPV-AIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD 252 (364)
T ss_dssp TTCSEEEEEGGGH-HHHHHHHHHHTTT-TCCCCE-EEEECCCBCSSCC----------------CBCCSSSGGGSCBTTC
T ss_pred cCCCEEeccchHH-HHHHHHHHHHHHc-CCCCce-eeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccC
Confidence 3678999999997 6766655554444 333343 35656665 66 7899999 789999877
Q ss_pred HHhhCChhhHHHHhhhc
Q psy14486 288 LLKKYNPEVIRFFILRS 304 (472)
Q Consensus 288 ll~~~~~d~lR~~ll~~ 304 (472)
+|+.++=.+.+.
T Consensus 253 -----~p~~i~~Ki~~a 264 (364)
T 2cya_A 253 -----SDDDIRRKIRKA 264 (364)
T ss_dssp -----CHHHHHHHHHTS
T ss_pred -----CHHHHHHHHHhC
Confidence 577777777664
No 45
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.93 E-value=7e-06 Score=80.85 Aligned_cols=65 Identities=32% Similarity=0.443 Sum_probs=42.8
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecC-ccccccCCCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INN-KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G-~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
..++.++|.|.. +|.+ .+.-.+ . +.| +.+|+-+|. ++| +|||||.||.|++.| +|+.+|==+.+.
T Consensus 163 ~~~~v~~G~DQ~-~~~~--l~R~i~--~-~~~-~~~~~~~l~~l~G~~KMSKS~~~~I~L~d-----~~~~i~~KI~~a 229 (314)
T 2zp1_A 163 GVDVAVGGMEQR-KIHM--LARELL--P-KKV-VCIHNPVLTGLDGEGKMSSSKGNFIAVDD-----SPEEIRAKIKKA 229 (314)
T ss_dssp TCSEEEEEGGGH-HHHH--HHHHHS--S-SCC-EEEEECCCBCTTSSSBCCTTTTCSCBTTC-----CHHHHHHHHHHS
T ss_pred CCCEEEcChhHH-HHHH--HHHHhc--C-CCc-EEeeccccccCCcccccCCCCcceecCCC-----CHHHHHHHHHhC
Confidence 578999999987 4543 222222 1 333 345656665 789 799999999998876 566666555553
No 46
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=97.83 E-value=6.6e-05 Score=75.49 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=44.1
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-e-cCc-cccccC-CCccCHHHHHhhCChhhHHHHhhh
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-I-NNK-KMSKSF-GNFCTIRDLLKKYNPEVIRFFILR 303 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~-~G~-KMSKS~-Gn~i~~~dll~~~~~d~lR~~ll~ 303 (472)
..|+.++|.|.. +|.+.-.-...-++..+-| +.+++.+|. + +|. |||||. +|.|++.| +|+.++==+.+
T Consensus 200 ~ad~vpgG~DQ~-~~l~l~Rdla~r~~~~~~~-~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D-----~p~~i~~KI~k 272 (373)
T 3vgj_A 200 NVDICQLGIDQR-KVNMLAREYCDIKKIKKKP-VILSHGMLPGLLEGQEKMSKSDENSAIFMDD-----SESDVNRKIKK 272 (373)
T ss_dssp TCSEECCBGGGH-HHHHHHHHHHHHHTCSCCC-EEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC-----CHHHHHHHHHH
T ss_pred CCcEEEcchhhH-HHHHHHHHHHHHhCCCCCc-eEEeCCeeecCCCCCCCCcCCCCCCeeecCC-----CHHHHHHHHHh
Confidence 578999999987 6665544333333322223 345666665 5 784 999999 57898765 56666555544
No 47
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=97.65 E-value=0.002 Score=64.75 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=46.7
Q ss_pred EEcCCCCCCcCCcccchHHHHHHHHHHHHHH-CCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Q psy14486 28 YVCGITAYDYCHLGHARLMIVFDIVQRWLRI-NNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 28 y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~-~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~Lg 106 (472)
..+|--|+|.+||||.-.++. .+.++ .|+++.+.. .|.-.-+ ...++.++ ..+..+...++.++|
T Consensus 38 i~sG~~PTG~lHLGhyvGal~-----~~~~LQ~~~~~~~~I--aD~hAlt------~~~~~~~l-r~~~~~~aa~~lA~G 103 (388)
T 3prh_A 38 IFSGIQPSGSVTLGNYIGAMK-----QFVELQHDYNSYFCI--VDQHAIT------VPQDRLEL-RKNIRNLAALYLAVG 103 (388)
T ss_dssp EEEEECCCSCCBHHHHHHTHH-----HHHHTTTTSEEEEEE--CHHHHTT------SCCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEeeCCCCcchHHHHHHHHH-----HHHHHHccCcEEEEE--ecceeee------cCCCHHHH-HHHHHHHHHHHHHhC
Confidence 467888889999999765542 22232 299987654 2221111 12345544 455567788888899
Q ss_pred CCCCCc-cccCCCc
Q psy14486 107 IQPPDY-QPCATNY 119 (472)
Q Consensus 107 I~~d~~-~~r~s~~ 119 (472)
+.++-. +-..|+.
T Consensus 104 lDp~kt~if~qS~v 117 (388)
T 3prh_A 104 LDPEKATLFIQSEV 117 (388)
T ss_dssp CCTTTEEEEEGGGS
T ss_pred CChhHeEEEecccc
Confidence 988742 2245544
No 48
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=97.61 E-value=6.6e-05 Score=74.87 Aligned_cols=68 Identities=22% Similarity=0.130 Sum_probs=43.9
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-e-cC-ccccccC-CCccCHHHHHhhCChhhHHHHhhh
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-I-NN-KKMSKSF-GNFCTIRDLLKKYNPEVIRFFILR 303 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~-~G-~KMSKS~-Gn~i~~~dll~~~~~d~lR~~ll~ 303 (472)
..++..+|.|.. +|.+.-.-....+ |...|-. +++.+|. + +| +|||||. ||.|++.| +|+.++==+.+
T Consensus 186 ~~~~~~~G~DQ~-~~i~l~Rdia~r~-~~~~p~~-~~~~~l~gL~dg~~KMSKS~~~~~I~L~d-----~p~~i~kKI~k 257 (348)
T 2j5b_A 186 GIDICQLGIDQR-KVNMLAIEYANDR-GLKIPIS-LSHHMLMSLSGPKKKMSKSDPQGAIFMDD-----TEQEVSEKISR 257 (348)
T ss_dssp CCSEECCBGGGH-HHHHHHHHHHHHT-TCCCCEE-EEBCCCCCTTCSSCCCSTTCGGGSCBTTC-----CHHHHHHHHHH
T ss_pred CCcEEEeccChH-HHHHHHHHHHHHh-CCCCcee-ecCccccCCCCcccccccCCCCCeEeecC-----CHHHHHHHHhc
Confidence 568899999987 6765544333333 4444433 5656665 6 56 6999999 68898765 55555554444
No 49
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.59 E-value=0.00014 Score=73.26 Aligned_cols=72 Identities=26% Similarity=0.266 Sum_probs=48.8
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhccCC-------CCceEEEeeeeEE-ecC------------------ccccccC-
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGAYKH-------KFVNYWMHSGFVK-INN------------------KKMSKSF- 279 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-------~~~~~~~h~g~l~-~~G------------------~KMSKS~- 279 (472)
...++..+|.|.. +|++.-.-...-++.. .+..+.+++.+|. ++| +|||||.
T Consensus 179 ~~~~~vp~G~DQ~-~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~ 257 (375)
T 2cyc_A 179 QGVTIAHAGMDQR-KAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKP 257 (375)
T ss_dssp TTCSEEEEEGGGH-HHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCG
T ss_pred hCCCeecccchHH-HHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCC
Confidence 3678999999998 7776555444443220 1122345656665 777 8999999
Q ss_pred CCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 280 GNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 280 Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
+|.|++.| +|+.++=.+.+.
T Consensus 258 ~~~I~L~d-----~p~~i~~KI~~A 277 (375)
T 2cyc_A 258 YSAVFIHD-----SPEEIRQKLRKA 277 (375)
T ss_dssp GGSCBTTC-----CHHHHHHHHHHS
T ss_pred CCeeccCC-----CHHHHHHHHHHh
Confidence 78899876 577787777663
No 50
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.54 E-value=0.0002 Score=72.30 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=50.8
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHH-CCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRI-NNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQED 101 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~-~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 101 (472)
+.+.+| +|--|+|.+||||.-+++ +.|+|.. .|+++.+..+ |.+ . ++. ..+.++.++ ..+...+.++
T Consensus 72 ~p~~i~-sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i~Ia-D~h-a-~~~---~~~~~~e~i-~~~~~~~~~~ 139 (392)
T 3jxe_A 72 RGFFLY-TGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYIQIT-DDE-K-FLF---KENLTFDDT-KRWAYDNILD 139 (392)
T ss_dssp CCCEEE-EEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEEEEC-HHH-H-HHH---CSSCCHHHH-HHHHHHHHHH
T ss_pred CCeEEE-eccCCCCchhHHHHHHHH----HHHHHHHhcCCceEEEec-chH-H-hhc---CCCCCHHHH-HHHHHHHHHH
Confidence 345555 455555999999966553 2344555 6998877654 222 1 111 113455544 4555677788
Q ss_pred HHHhCCCCCCc-cccCCCcHH
Q psy14486 102 SLLLHIQPPDY-QPCATNYIP 121 (472)
Q Consensus 102 l~~LgI~~d~~-~~r~s~~~~ 121 (472)
+.++|+.++-. +...|+..+
T Consensus 140 ~lA~GlDp~kt~i~~qS~~~~ 160 (392)
T 3jxe_A 140 IIAVGFDPDKTFIFQNSEFTK 160 (392)
T ss_dssp HHTTCCCTTSEEEEETTTSTH
T ss_pred HHHhCcCccceEEEECchhHH
Confidence 88899987642 235565544
No 51
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.49 E-value=4.1e-05 Score=77.42 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=34.2
Q ss_pred ceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecC--ccccccCCCccCHHHHHhhCChhhHHHHhhh
Q psy14486 229 FDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INN--KKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303 (472)
Q Consensus 229 ~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G--~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~ 303 (472)
.++..+|.|.. ||.+.-.-...-+ |.+.|. .+++-+|. ++| +|||||.||.|++.| +|+.++==+.+
T Consensus 225 ~~lvp~G~DQ~-~~i~l~Rdla~r~-~~~~p~-~l~~~~l~gLdG~~~KMSKS~~~~I~L~D-----~p~~i~kKI~k 294 (395)
T 3i05_A 225 FCLIPQAIDQD-PYFRLTRDIAPRL-GYLKPA-VIHSKFFPGLSGPKGKMSSSSGTAVLLTD-----TEKMVKDKINK 294 (395)
T ss_dssp EEEEEEEGGGH-HHHHHHHHTHHHH-TCCCCE-EEEECCCCCC-------------CCBTTC-----CHHHHHHHHC-
T ss_pred ceEEEeccchH-HHHHHHHHHHHHc-CCCCce-eeccccccCCCCCcccCCCCCCCcccCCC-----CHHHHHHHHHh
Confidence 57889999987 6665543333333 444443 35556665 788 799999999998876 66666654444
No 52
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.47 E-value=0.00036 Score=70.43 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=46.0
Q ss_pred ceEEEEcCCCCC-CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Q psy14486 24 KVSLYVCGITAY-DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN-NESIKTLTSRFIKAAQED 101 (472)
Q Consensus 24 ~v~~y~cgPt~~-g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~-g~~~~~~~~~~~~~~~~~ 101 (472)
.+++ .||--|+ |.+||||. |.+..++++++..|..|.+ -+.|.. +.... ..+++++. ++...+.++
T Consensus 74 ~~~v-y~G~~PTa~~lHlGh~---v~~~~~~~lQ~~~~~~v~i--~I~D~~-----~~~~r~~~~~e~i~-~~~~~~~~~ 141 (393)
T 3hv0_A 74 LFYL-YTGRGPSSESLHVGHL---VPFLFTKYLQDTFKVPLVI--QLTDDE-----KFIFKSNLTLEETH-NYAYENMKD 141 (393)
T ss_dssp CCEE-EEEECCSSSSCBSTTH---HHHHHHHHHHHHHCCCEEE--EECHHH-----HHHHCTTCCHHHHH-HHHHHHHHH
T ss_pred CeEE-EeCCCCCCCCccHHHH---HHHHHHHHHHHhcCCCeEe--eccChH-----HHhhccCCCHHHHH-HHHHHHHHH
Confidence 3444 4778888 78999994 4444455555444766655 233332 22222 55665554 555677788
Q ss_pred HHHhCCCCCC
Q psy14486 102 SLLLHIQPPD 111 (472)
Q Consensus 102 l~~LgI~~d~ 111 (472)
+.++|+.++-
T Consensus 142 ~lA~GlDp~k 151 (393)
T 3hv0_A 142 IIACGFDPEL 151 (393)
T ss_dssp HHTTCCCTTT
T ss_pred HHHcCCCCcc
Confidence 8889997653
No 53
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.39 E-value=0.00024 Score=72.70 Aligned_cols=68 Identities=21% Similarity=0.126 Sum_probs=38.3
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecC--ccccccCCC-ccCHHHHHhhCChhhHHHHhhh
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INN--KKMSKSFGN-FCTIRDLLKKYNPEVIRFFILR 303 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G--~KMSKS~Gn-~i~~~dll~~~~~d~lR~~ll~ 303 (472)
..++..+|.|.. ||.+.-.-....+ |.+.|.. +++-+|. ++| +|||||.+| .|++.| +|+.++==+.+
T Consensus 249 ~~~lvp~G~DQ~-~~i~l~Rdla~r~-~~~~p~~-l~~~ll~gLdG~~~KMSKS~~nsaI~L~d-----~p~~i~~KI~~ 320 (432)
T 2ip1_A 249 TPCLIPCAIDQD-PYFRVCRDVADKL-KYSKPAL-LHSRFFPALQGSTTKMSASDDTTAIFMTD-----TPKQIQKKINK 320 (432)
T ss_dssp CCEEEEEEGGGH-HHHHHHHHHHHHH-TSCCCEE-EEECCCCCTTC--------CGGGCCBTTC-----CHHHHHHHHHH
T ss_pred CceEEEeccCcH-HHHHHHHHHHHHh-CCCCcee-eccccccCCCCCccccCCCCCCCeEeccC-----CHHHHHHHhhh
Confidence 456778999987 6655544333333 4344544 5556665 789 899999999 898866 45555544443
No 54
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=97.34 E-value=0.00024 Score=71.37 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=53.7
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDS 102 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 102 (472)
|+.-...+|--|+|.+||||.-+++ -.+++...|++|.+.. .|...-+ -...+..+....+..++..++
T Consensus 68 gk~~~v~sG~~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~I--aD~ha~t-----~~~~~~~e~~r~~~~~~~~~~ 136 (372)
T 3a04_A 68 GERVAVLTGFMPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAI--ADAEAFA-----VRRIGREEAVRIAVEEYIANM 136 (372)
T ss_dssp TCCCEEEEEECCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEE--CHHHHHH-----TTCCCHHHHHHHHHHTTHHHH
T ss_pred CCCCEEEeCcCCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEE--ecchhhc-----cCCCCCHHHHHHHHHHHHHHH
Confidence 3333445677888999999955432 3456666799986543 3332111 112234455556677777888
Q ss_pred HHhCCCCCCc-cccCCCcHHHHHHH
Q psy14486 103 LLLHIQPPDY-QPCATNYIPQILKM 126 (472)
Q Consensus 103 ~~LgI~~d~~-~~r~s~~~~~~~~~ 126 (472)
-++|+.++-. +-..|+....+-++
T Consensus 137 lA~GlDP~kt~if~qS~~~~~~~~l 161 (372)
T 3a04_A 137 IALGLDPKDTEFYFQTNRGTPYFRL 161 (372)
T ss_dssp HHHTCCTTTCEEEEGGGSCHHHHHH
T ss_pred HHcCCChHHcchhhhccchHHHHHH
Confidence 8999988642 23455443333333
No 55
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.26 E-value=0.00011 Score=74.45 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=44.1
Q ss_pred CCCceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecC--ccccccC-CCccCHHHHHhhCChhhHHHHh
Q psy14486 226 GSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INN--KKMSKSF-GNFCTIRDLLKKYNPEVIRFFI 301 (472)
Q Consensus 226 g~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G--~KMSKS~-Gn~i~~~dll~~~~~d~lR~~l 301 (472)
+...++..+|.|.. ||.+.-.-...-+ |.+-|.. +++-+|. ++| +|||||. +|.|++.| +|+.++==+
T Consensus 241 ~~~a~lvpvG~DQ~-~~i~l~Rdla~r~-~~~~p~~-l~~~~l~gLdG~~~KMSKS~~~~~I~L~D-----~p~~I~kKI 312 (406)
T 3tze_A 241 KGAMCLVPAAVDQD-PFFRLARDKAKAL-GEKKPSS-IYVSLLPDLKGVNRKMSASDPNSSIYLDD-----AQDTIRKKI 312 (406)
T ss_dssp TTCEEEEEEEGGGH-HHHHHHHHHHHHH-TCCCCEE-EEECCCCCTTSCCCCSSCSCGGGSCBTTC-----CHHHHHHHH
T ss_pred cCCCeEEeeccchH-HHHHHHHHHHHHc-CCCCcee-eccCcccCCCCCCcCCCCCCCCCcccCCC-----CHHHHHHHH
Confidence 33567889999987 6765543333333 4444444 4556665 788 6999999 68898765 445554433
Q ss_pred hh
Q psy14486 302 LR 303 (472)
Q Consensus 302 l~ 303 (472)
.+
T Consensus 313 ~k 314 (406)
T 3tze_A 313 IA 314 (406)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 56
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=97.25 E-value=5.2e-05 Score=78.59 Aligned_cols=66 Identities=18% Similarity=0.103 Sum_probs=42.1
Q ss_pred eEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecC--ccccccCCC-ccCHHHHHhhCChhhHHHHhhh
Q psy14486 230 DIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INN--KKMSKSFGN-FCTIRDLLKKYNPEVIRFFILR 303 (472)
Q Consensus 230 dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G--~KMSKS~Gn-~i~~~dll~~~~~d~lR~~ll~ 303 (472)
.+..+|.|.. ||.+.-.-+...+ |.+-|.. +++-+|. ++| +|||||.+| .|++.| +|+.++==+.+
T Consensus 305 ~~VpvG~DQ~-~~i~l~Rdla~r~-~~~~p~~-l~~pll~gLdG~~~KMSKS~~nsaI~L~d-----~p~~i~kKi~~ 374 (477)
T 1r6t_A 305 CLIPCAIDQD-PYFRMTRDVAPRI-GYPKPAL-LHSTFFPALQGAQTKMSASDPNSSIFLTD-----TAKQIKTKVNK 374 (477)
T ss_dssp EEEEEEGGGH-HHHHHHHHHGGGG-TCCCCEE-EEECCCEETTEEEEECCTTSTTCCCBTTC-----CHHHHHHHHHH
T ss_pred eeEeccccHH-HHHHHHHHHHHHh-CCCCcee-eecccccCCCCCccccCCCCCCCceeecC-----CHHHHHHHhcc
Confidence 4555799987 6665544443333 4444544 4555555 889 899999999 898866 45555544444
No 57
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=97.15 E-value=0.0012 Score=71.31 Aligned_cols=57 Identities=16% Similarity=0.015 Sum_probs=36.9
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-e-cC-ccccccCC-CccCHH
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-I-NN-KKMSKSFG-NFCTIR 286 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~-~G-~KMSKS~G-n~i~~~ 286 (472)
..|+..+|.|.. +|.+.-.-...-++..+-| +.+++.+|. + +| +|||||.+ |.|++.
T Consensus 183 ~ad~vpvG~DQ~-~~l~l~Rdla~r~n~~~~p-~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 183 KADICQLGLDQR-KVNMLAREYCDLIGRKLKP-VILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp TCSEECCBGGGH-HHHHHHHHHHHHTTCCCCC-EEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred CCCEEeccccHH-HHHHHHHHHHHHhCCCCCc-eEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 578999999997 6665544333333332223 345666665 6 78 49999998 678753
No 58
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=96.96 E-value=0.00059 Score=67.22 Aligned_cols=72 Identities=19% Similarity=0.097 Sum_probs=46.7
Q ss_pred CCceEeeeccCCcCchhHHHHHHHhhcc---C--CCCceEEE--eeeeEE-ecCccccccCCCccCHHHHHhhCChhhHH
Q psy14486 227 SHFDIHGGGQDLKFPHHENEIAQSEGAY---K--HKFVNYWM--HSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIR 298 (472)
Q Consensus 227 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~---g--~~~~~~~~--h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR 298 (472)
...++..+|.|.. +|.+.-.-...-.+ | .+.|.-.+ ++-+|. ++|+|||||.+|.|++.| +|+.++
T Consensus 138 ~~~~~vpvG~DQ~-~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~ 211 (322)
T 3tzl_A 138 FDTRIVPVGKDQI-QHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLK 211 (322)
T ss_dssp TTCSEEECCGGGH-HHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHH
T ss_pred hCCcEEEeccchH-HHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHH
Confidence 4678999999987 67665332222221 2 23344333 234444 799999999999998876 677776
Q ss_pred HHhhhc
Q psy14486 299 FFILRS 304 (472)
Q Consensus 299 ~~ll~~ 304 (472)
=.+.+.
T Consensus 212 ~KI~~a 217 (322)
T 3tzl_A 212 KQISSI 217 (322)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 666653
No 59
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=96.91 E-value=0.0039 Score=62.09 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=46.3
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhc---cC--CCCceEEE-eeeeEE-ecCc-cccccCCCccCHHHHHhhCChhhHHH
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGA---YK--HKFVNYWM-HSGFVK-INNK-KMSKSFGNFCTIRDLLKKYNPEVIRF 299 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~---~g--~~~~~~~~-h~g~l~-~~G~-KMSKS~Gn~i~~~dll~~~~~d~lR~ 299 (472)
..++..+|.|.. +|.+.-.-+...+ +| .+.|...+ |.-+|. ++|+ |||||.||.|++.| +|+.++=
T Consensus 162 ~~~~vpvG~DQ~-~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d-----~p~~i~~ 235 (351)
T 1yi8_B 162 GATLVPVGDDQL-PMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD-----SADEVAR 235 (351)
T ss_dssp TCSEEEECGGGH-HHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC-----CHHHHHH
T ss_pred CCCEEEecCCcH-HHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC-----CHHHHHH
Confidence 578999999998 6776544433332 24 23454434 334444 6897 99999999998866 3666666
Q ss_pred Hhhh
Q psy14486 300 FILR 303 (472)
Q Consensus 300 ~ll~ 303 (472)
.+.+
T Consensus 236 Ki~~ 239 (351)
T 1yi8_B 236 KVMG 239 (351)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6655
No 60
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=96.73 E-value=0.00062 Score=67.08 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=52.3
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
..++.+||.|.. +|.+.-.-...-.++.+ + +.++.-+|. ++|+|||||.||.|++.| ++.+|+.++=.+.+.
T Consensus 191 ~~~v~~gG~DQ~-~~i~l~rdla~r~n~~~-~-~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 191 GVVLCIGGSDQW-GNITSGIDLTRRLHQNQ-V-FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWINT 263 (322)
T ss_dssp CEEEEEECTTCH-HHHHHHHHHHHHHHCCC-C-EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHTC
T ss_pred CceEEecCchhH-HHHHHHHHHHHHhCCCC-c-eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhCC
Confidence 578999999997 77766554444444322 2 334445554 689999999999999988 778898888777664
No 61
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=96.59 E-value=0.00078 Score=67.26 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=41.4
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
..++.++|.|.. +|.+.-.-...-.++.+ + +.++.-+|. ++|+|||||.||.|++.| +.-+|+.++=.+.+.
T Consensus 210 ~~~i~p~G~DQ~-~~i~l~rdla~r~n~~~-~-~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 210 GCRVQLGGSDQL-GNIMSGYEFINKLTGED-V-FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVRQ 282 (356)
T ss_dssp CCCEEEEEGGGH-HHHHHHHHHHHHHSSCC-C-EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCCCC-c-cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHcC
Confidence 578999999997 77766554444443322 2 345555554 799999999999999987 567898888888774
No 62
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=96.55 E-value=0.003 Score=63.80 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=50.3
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccC-----------CC----CceEEEeeeeEE-ecCccccccCCCccCHHHHHhh
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYK-----------HK----FVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKK 291 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g-----------~~----~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~ 291 (472)
+.++.++|.|.. +|.+.-.-+..-.++ .| -+.+.+++-+|. ++|+|||||.||.|++.| +.
T Consensus 232 ~~~i~~gG~DQ~-~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~ 308 (392)
T 1y42_X 232 GVQMQIGGSDQY-GNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP--YQ 308 (392)
T ss_dssp CEEEEEECTTCH-HHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST--TT
T ss_pred CccEEecCcchH-hHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC--CC
Confidence 478999999995 776654433222111 01 123456666665 799999999999999977 34
Q ss_pred CChhhHHHHhhhc
Q psy14486 292 YNPEVIRFFILRS 304 (472)
Q Consensus 292 ~~~d~lR~~ll~~ 304 (472)
-+|+.++=++.+.
T Consensus 309 tsp~~i~qki~~~ 321 (392)
T 1y42_X 309 TSVFDFYGYFVRR 321 (392)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC
Confidence 6788887777765
No 63
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=96.49 E-value=0.0019 Score=65.94 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=52.4
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCccccccCCC-ccCHHHHHhhCChhhHHHHhhhc
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNKKMSKSFGN-FCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn-~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
..++..+|.|.. +|.+.-.-...-.++.+ .+.++.-+|. .+|+|||||.|| .|++.| +..+|+.++=++.+.
T Consensus 187 ~~~i~~gG~DQ~-~ni~lgrdlarr~~~~~--~~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 187 GCTLQIGGADQW-GNIIAGVRLVRQKLGAT--VHALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVNT 260 (432)
T ss_dssp CCCEEEECSTTH-HHHHHHHHHHHHHHCCC--CEEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCCCC--ccccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhcC
Confidence 578999999997 67665444444444332 2445555554 799999999999 999987 577888888888774
No 64
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=96.46 E-value=0.0014 Score=67.02 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=50.6
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCc-cccccCCCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNK-KMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~-KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
..++..+|.|.. +|.+.-.-.....+..+ + +.+++-+|. ++|. |||||.||.|++.| +|+.++=++.+.
T Consensus 187 ~~~l~~gG~DQ~-~ni~l~rdlarr~~~~~-~-~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQR-FNLLVGREVQRAYGQSP-Q-VCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHHHHTTCCC-C-EEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHH-HHHHHHHHHHHHhCCCC-c-eEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 478999999997 77766554444443233 3 445656654 7896 99999999999988 888888887775
No 65
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=96.45 E-value=0.0016 Score=66.26 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=50.4
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhc-cCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGA-YKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~-~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
..++..+|.|.. +|.+.-.-...-. ++.+ + +.++.-+|. .+|+|||||.||.|++.| +.-+|+.++=++.+.
T Consensus 185 ~~~i~~gG~DQ~-~ni~lgrdlarr~~~~~~-~-~~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (419)
T 2ts1_A 185 GCRLQIGGSDQW-GNITAGLELIRKTKGEAR-A-FGLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWINT 258 (419)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHHHHHHC--C-C-EEEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhcCCCC-e-eecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHhcC
Confidence 578999999987 6766554444444 3322 2 445555654 799999999999999987 466777777777663
No 66
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=96.44 E-value=0.0019 Score=65.87 Aligned_cols=72 Identities=19% Similarity=0.180 Sum_probs=51.0
Q ss_pred CceEeeeccCCcCchhHHHHHHHhhc-cCCCCceEEEeeeeEE-ecCccccccCCCccCHHHHHhhCChhhHHHHhhhc
Q psy14486 228 HFDIHGGGQDLKFPHHENEIAQSEGA-YKHKFVNYWMHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304 (472)
Q Consensus 228 ~~dih~~G~Dl~fpH~~~~~a~~~a~-~g~~~~~~~~h~g~l~-~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~ 304 (472)
..++..+|.|.. +|.+.-.-...-. ++.+ + +.++.-+|. ++|+|||||.||.|++.| +.-+|+.++=++.+.
T Consensus 186 ~~~i~~gG~DQ~-~ni~~grdla~r~~~~~~-~-~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 259 (420)
T 1jil_A 186 NCKIQVGGSDQW-GNITSGIELMRRMYGQTD-A-YGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTSPYEFYQFWINQ 259 (420)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHHHHHHCCCC-C-EEEEECCCBCTTSCBTTBCSSSBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhcCCCC-e-eEeecccccCCccccccCCCCCeEecCC--CCCCHHHHHHHHhcC
Confidence 578999999987 6766655444444 3332 2 445555654 799999999999999987 456777777776663
No 67
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=95.27 E-value=0.0073 Score=60.03 Aligned_cols=77 Identities=26% Similarity=0.204 Sum_probs=48.5
Q ss_pred hhhhhCCCceEeeeccCCcCchhHHHHHHHhhcc---C--CCCceEEEe--eeeE-EecC--ccccccCCC---ccCHHH
Q psy14486 221 SCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAY---K--HKFVNYWMH--SGFV-KINN--KKMSKSFGN---FCTIRD 287 (472)
Q Consensus 221 ~~~~~g~~~dih~~G~Dl~fpH~~~~~a~~~a~~---g--~~~~~~~~h--~g~l-~~~G--~KMSKS~Gn---~i~~~d 287 (472)
+..++-...++.++|.|.. +|.+.-.-....++ | .+.|...+. ..+| .++| +|||||.+| .|++.|
T Consensus 140 aaDil~~~a~~vpvG~DQ~-~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 140 AGDILLYQPDIVPVGNDQK-QHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp HHHHHTTCCSEEECCGGGH-HHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred HHHHHHhCccEEEecccHH-HHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 3334444789999999998 67766544433332 4 344554332 2333 3678 899999999 898766
Q ss_pred HHhhCChhhHHHHhhh
Q psy14486 288 LLKKYNPEVIRFFILR 303 (472)
Q Consensus 288 ll~~~~~d~lR~~ll~ 303 (472)
+|+.++==+.+
T Consensus 219 -----~~~~i~~KI~~ 229 (348)
T 2yy5_A 219 -----PKEVVVKKIRQ 229 (348)
T ss_dssp -----CHHHHHHHHHT
T ss_pred -----CHHHHHHHHHh
Confidence 55555555444
No 68
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=93.60 E-value=0.041 Score=56.11 Aligned_cols=66 Identities=18% Similarity=0.103 Sum_probs=42.2
Q ss_pred eEeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecC--ccccccCCC-ccCHHHHHhhCChhhHHHHhhh
Q psy14486 230 DIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INN--KKMSKSFGN-FCTIRDLLKKYNPEVIRFFILR 303 (472)
Q Consensus 230 dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G--~KMSKS~Gn-~i~~~dll~~~~~d~lR~~ll~ 303 (472)
.+..+|.|.. ||.+.-.-....+ |.+-|.. +++-+|. ++| +|||||.+| .|++.| +|+.++==+.+
T Consensus 258 ~lVpvG~DQ~-~~i~l~Rdla~r~-~~~~P~~-l~~pll~gLdG~~~KMSKS~~nsaI~L~D-----~p~~I~kKI~~ 327 (437)
T 1r6u_A 258 CLIPCAIDQD-PYFRMTRDVAPRI-GYPKPAL-LHSTFFPALQGAQTKMSASDPNSSIFLTD-----TAKQIKTKVNK 327 (437)
T ss_dssp EEEEEEGGGH-HHHHHHHHHGGGG-TCCCCEE-EEECCCEETTEEEEECCTTSSSSCCBTTC-----CHHHHHHHHHH
T ss_pred eEEEeehhhH-HHHHHHHHHHHHh-CCCCceE-eecccccCCCCCccccCCCCCCCeeeccC-----CHHHHHHHhhc
Confidence 4555799987 6665444333333 4444544 4555554 889 899999999 898866 55555555444
No 69
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=92.99 E-value=0.033 Score=54.99 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=45.4
Q ss_pred EEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Q psy14486 28 YVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHI 107 (472)
Q Consensus 28 y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI 107 (472)
..+|--|+|.+||||.-.++.- +.+... ++++.+.. .|.-.-+ . ..++. ...++...+..++.++|+
T Consensus 9 v~sG~~PTG~lHLGhy~g~l~~--~~~lQ~--~~~~~~~i--aD~ha~~-~-----~~~~~-~~~~~~~~~~~~~lA~Gl 75 (341)
T 3sz3_A 9 VLSGVQPSGELSIGNYLGALRQ--WQQMQD--DYDCQYCV--VDLHAIT-V-----RQDPQ-ALHEATLDALAICLAVGV 75 (341)
T ss_dssp EEEEECSSSCCBHHHHHHTGGG--HHHHHH--HSEEEEEE--CHHHHTT-S-----CCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred EEeCcCCCCcccHHHHHHHHHH--HHHHHh--cCeEEEEE--ecceeEc-C-----CCCHH-HHHHHHHHHHHHHHHcCC
Confidence 4567777899999997655421 222333 57776543 2221111 0 23443 344666678888889999
Q ss_pred CCCCc-cccCCCc
Q psy14486 108 QPPDY-QPCATNY 119 (472)
Q Consensus 108 ~~d~~-~~r~s~~ 119 (472)
.++-. +-..|+.
T Consensus 76 Dp~k~~i~~qS~v 88 (341)
T 3sz3_A 76 DPKKSTLFVQSHV 88 (341)
T ss_dssp CTTTSEEEEGGGC
T ss_pred ChhhcEEEeccch
Confidence 88642 2344544
No 70
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=91.28 E-value=0.087 Score=53.80 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCC-CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy14486 23 GKVSLYVCGITAY-DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQED 101 (472)
Q Consensus 23 ~~v~~y~cgPt~~-g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 101 (472)
|+.....||--|+ |.+||||.- .+-.++++++.-|..+.+. |+|.. +. ..+...+++++. .+...+.++
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v---~~~~l~~lQ~~~g~~v~I~--IgD~~-a~---~~r~~lt~E~I~-~n~~~~~~~ 158 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLL---PFIFTKYLQDAFKCYVVIQ--ITDDE-KF---LRNRSLSYAEVD-SYTRENIKD 158 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHH---HHHHHHHHHHHHTCEEEEE--ECHHH-HH---HHCTTCCHHHHH-HHHHHHHHH
T ss_pred CCCeEEEecCCCCCCCccHHHHH---HHHHHHHHHHccCceEEEE--eeCcH-Hh---hcccCCCHHHHH-HHHHHHHHH
Confidence 3334456788888 899999944 4444555444436666653 44431 11 122245665554 555577788
Q ss_pred HHHhCCCCC
Q psy14486 102 SLLLHIQPP 110 (472)
Q Consensus 102 l~~LgI~~d 110 (472)
+-++|+.++
T Consensus 159 ~lA~GlDpe 167 (451)
T 3foc_A 159 IIACGFDPD 167 (451)
T ss_dssp HHTTTCCGG
T ss_pred HHHcCCCCC
Confidence 888898764
No 71
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=90.34 E-value=0.11 Score=51.44 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=45.0
Q ss_pred EEcCCCCCCcCCcccchHHHHHHHHHHHHHHC-CCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Q psy14486 28 YVCGITAYDYCHLGHARLMIVFDIVQRWLRIN-NYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 28 y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~-G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~Lg 106 (472)
..+|--|+|.+||||.-.++ ..+.+++ ++++.+.. .|.-.-+ . ..++. ...++..+...++.++|
T Consensus 18 i~sG~~PTG~lHLGh~vg~l-----~~~~~lQ~~~~~~~~i--aD~hA~t-~-----~~~~~-~~~~~~~~~~~~~lA~G 83 (346)
T 3n9i_A 18 VFSGAQPSGELTIGNYMGAL-----RQWVQMQDDYDCIYCI--VDLHAIT-A-----RQDPA-LLRKRTLDTLALYLACG 83 (346)
T ss_dssp EEEEECSCSCCBHHHHHHTH-----HHHHTTTTTSEEEEEE--CHHHHTT-S-----CCCHH-HHHHHHHHHHHHHHHHT
T ss_pred EEECcCCCCcccHHHHHHHH-----HHHHHHHhhCcEEEEE--ecceeec-C-----CCCHH-HHHHHHHHHHHHHHHcC
Confidence 44677777999999976553 3443333 77776543 2221111 0 23343 34466667888888899
Q ss_pred CCCCCc-cccCCCc
Q psy14486 107 IQPPDY-QPCATNY 119 (472)
Q Consensus 107 I~~d~~-~~r~s~~ 119 (472)
+.++-. +-..|+.
T Consensus 84 lDp~k~~if~qS~v 97 (346)
T 3n9i_A 84 IDPKKSTIFVQSHV 97 (346)
T ss_dssp CCTTTSEEEEGGGC
T ss_pred CCccceEEEecccc
Confidence 988642 2344543
No 72
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=87.36 E-value=1.1 Score=45.72 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=39.9
Q ss_pred EeeeccCCcCchhHHHHHHHhhccCCCCceEEEeeeeEE-ecCc--cccccCCC-ccCHHHHHhhCChhhHHHHhhh
Q psy14486 231 IHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-INNK--KMSKSFGN-FCTIRDLLKKYNPEVIRFFILR 303 (472)
Q Consensus 231 ih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~-~~G~--KMSKS~Gn-~i~~~dll~~~~~d~lR~~ll~ 303 (472)
+..+|.|.. +|.+.-.-+...+ |.+.|.. +++-+|. ++|. |||||.+| .|.+.| +|+.++==+.+
T Consensus 290 ~VPvG~DQ~-~hlel~Rdia~rf-n~~~p~~-~~~~~l~gLdG~~~KMSKS~~ns~I~l~D-----~p~~I~kKI~k 358 (451)
T 3foc_A 290 LIASGIEQD-PYFRLARDLAPRM-GHPKNAY-LLGKFLPGLQGSGTKMSASDPNSAIYLTD-----TPAQIKNKINR 358 (451)
T ss_dssp EEEECTTTH-HHHHHHHHHTTTT-TSCCCEE-EEECCCCBTTBTTCCCCTTCGGGSCBTTC-----CHHHHHHHHHH
T ss_pred eeeeecchH-HHHHHHHHHHHHh-CCCCCee-ecCCcccCCCCCCCccCCCCCCCeeeecC-----CHHHHHHHHhh
Confidence 668899998 6765544333333 4554544 4555554 7775 99999987 676644 44555444433
No 73
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=86.17 E-value=0.87 Score=44.89 Aligned_cols=78 Identities=28% Similarity=0.289 Sum_probs=43.7
Q ss_pred hhhhhhCCCceEeeeccCCcCchhHH--HHHHHhhc-cCC--CCceEEEee--eeEE-e-cC-ccccccCC---CccCHH
Q psy14486 220 MSCYLLGSHFDIHGGGQDLKFPHHEN--EIAQSEGA-YKH--KFVNYWMHS--GFVK-I-NN-KKMSKSFG---NFCTIR 286 (472)
Q Consensus 220 m~~~~~g~~~dih~~G~Dl~fpH~~~--~~a~~~a~-~g~--~~~~~~~h~--g~l~-~-~G-~KMSKS~G---n~i~~~ 286 (472)
|+...+-...|+..+|.|.. ||++. ++|.-... +|. +.|...++. .+|. + +| +|||||.+ |.|++.
T Consensus 144 QAaDil~~~ad~vpvG~DQ~-~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~ 222 (346)
T 3n9i_A 144 MAADILLYQTNQVPVGEDQK-QHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELL 222 (346)
T ss_dssp HHHHHHTTTCSEECCCGGGH-HHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTT
T ss_pred HHHHHHHhCceEEEeccchH-HHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCC
Confidence 33344444678999999998 77765 34433221 232 233333331 2332 4 67 49999997 688765
Q ss_pred HHHhhCChhhHHHHhhh
Q psy14486 287 DLLKKYNPEVIRFFILR 303 (472)
Q Consensus 287 dll~~~~~d~lR~~ll~ 303 (472)
| +|+.++==+.+
T Consensus 223 D-----~p~~i~kKI~k 234 (346)
T 3n9i_A 223 E-----DPKSVVKKIKR 234 (346)
T ss_dssp S-----CHHHHHHHHHT
T ss_pred C-----CHHHHHHHHHh
Confidence 4 44445444333
No 74
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=85.55 E-value=0.77 Score=44.83 Aligned_cols=78 Identities=12% Similarity=0.006 Sum_probs=44.4
Q ss_pred EcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Q psy14486 29 VCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQ 108 (472)
Q Consensus 29 ~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~ 108 (472)
.||--|+|.+||||.-..+.. +.+.++ |+++.+..+ |.|. ++ ...++++ ...+..+...++.++|+.
T Consensus 7 ysG~~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha--~~-----~~~~~~~-l~~~~~~~~~~~lA~Gld 73 (322)
T 3tzl_A 7 LTGLQPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHA--MT-----SSQDGEK-LKQNSLKAAAAFLSLGID 73 (322)
T ss_dssp EEEECCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHH--TT-----TCCCHHH-HHHHHHHHHHHHHHTTCC
T ss_pred EEccCCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCee--ec-----CCCCHHH-HHHHHHHHHHHHHHcCCC
Confidence 467777899999997654432 333333 999876643 1111 00 0112333 345556677788889998
Q ss_pred CCCc-cccCCCc
Q psy14486 109 PPDY-QPCATNY 119 (472)
Q Consensus 109 ~d~~-~~r~s~~ 119 (472)
++-. +...|+.
T Consensus 74 p~k~~i~~qS~~ 85 (322)
T 3tzl_A 74 PQKSVFWLQSDV 85 (322)
T ss_dssp TTTSEEEEGGGC
T ss_pred ccceEEEECCcc
Confidence 7632 2344543
No 75
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=85.07 E-value=1.5 Score=43.96 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=25.8
Q ss_pred EEEEcCCCCCCc-CCcccchHHHHHHHHHHHHHHCCCceEEec
Q psy14486 26 SLYVCGITAYDY-CHLGHARLMIVFDIVQRWLRINNYDVTYVR 67 (472)
Q Consensus 26 ~~y~cgPt~~g~-lHiGhar~~v~~D~l~R~l~~~G~~v~~v~ 67 (472)
....||--|+|+ +||||.-+ .-.++++ ...|+++.++.
T Consensus 65 ~~vy~G~dPTg~sLHlGhlv~---l~~l~~l-Q~~G~~~~~lI 103 (392)
T 1y42_X 65 IGAYVGIDPTAPSLHVGHLLP---LMPLFWM-YLEGYKAFTLI 103 (392)
T ss_dssp CEEEEEECCCSSSCBGGGHHH---HHHHHHH-HHHTCEEEEEE
T ss_pred CEEEEeecCCCCCccHHHHHH---HHHHHHH-HHcCCcEEEEE
Confidence 345678888899 99999543 3334444 44599987765
No 76
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=83.57 E-value=1.6 Score=43.10 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=43.3
Q ss_pred CceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHC-CCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy14486 23 GKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRIN-NYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQED 101 (472)
Q Consensus 23 ~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~-G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 101 (472)
++.++ .||--|+|.+||||..+++ .++.+++ .+++.+.. .|.-..+-. ..+++++. ++...+..+
T Consensus 21 ~~~~v-ysG~~PTG~lHLGn~~g~l-----~~~~~lQ~~~~~~~~I--aD~ha~~~~-----~~~~e~i~-~~~~~~~~~ 86 (351)
T 1yi8_B 21 ARPRV-LTGDRPTGALHLGHLAGSL-----QNRVRLQDEAELFVLL--ADVQALTDH-----FDRPEQVR-ENVLAVALD 86 (351)
T ss_dssp CCSEE-EEEECCSSCCBHHHHHHTH-----HHHHHHTSSSEEEEEE--CHHHHHHHH-----TTCHHHHH-HHHHHHHHH
T ss_pred CCcEE-EEeeCCCCCccHHHHHHHH-----HHHHHHHHhCCeEEEE--ecchhhcCC-----CCCHHHHH-HHHHHHHHH
Confidence 34444 4566777999999987764 3442322 37775443 222111111 34555443 555677788
Q ss_pred HHHhCCCCC
Q psy14486 102 SLLLHIQPP 110 (472)
Q Consensus 102 l~~LgI~~d 110 (472)
+.++|+.++
T Consensus 87 ~la~Gldp~ 95 (351)
T 1yi8_B 87 YLAAGLDPQ 95 (351)
T ss_dssp HHHHTCCTT
T ss_pred HHHhCCChh
Confidence 889999876
No 77
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=83.23 E-value=1.2 Score=43.82 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=46.0
Q ss_pred EEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Q psy14486 27 LYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLH 106 (472)
Q Consensus 27 ~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~Lg 106 (472)
...||--|+|.+||||...++.-- +.|.. |+++.+..+ |.-.-+- ..+++++ ..+..++.+++.++|
T Consensus 6 ~i~sG~~PTG~lHLGn~vg~l~~~---~~lQ~-~~~~~~~Ia--D~ha~~~------~~d~~~i-~~~~~~~~~~~lA~G 72 (348)
T 2yy5_A 6 RALTGIQASGKQHLGNYLGVMQSL---IELQE-QCQLFVFVA--DLHSITV------DFQPQAL-KQNNFDLVRTLLAVG 72 (348)
T ss_dssp EEEEEECCCTTCBHHHHHHTGGGH---HHHHH-HSEEEEEEC--HHHHTTS------CCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEEeeCCCCcccHHHHHHHHHHH---HHHHh-CCcEEEEEc--ChhhccC------CCCHHHH-HHHHHHHHHHHHHhC
Confidence 345677777999999977664211 12444 788765442 1100000 0234433 345667788888999
Q ss_pred CCCCCc-cccCCCcH
Q psy14486 107 IQPPDY-QPCATNYI 120 (472)
Q Consensus 107 I~~d~~-~~r~s~~~ 120 (472)
+.++-. +-..|+..
T Consensus 73 ldp~k~~if~qS~~~ 87 (348)
T 2yy5_A 73 LDPQKACLFLQSDLL 87 (348)
T ss_dssp CCTTTEEEEEGGGCH
T ss_pred CChhHeEEEECCccc
Confidence 998732 23556544
No 78
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=81.66 E-value=1.9 Score=43.90 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=45.2
Q ss_pred CceEEEEcCCCCC-CcCCcccchHHHHHHHHHHHHHH-CCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy14486 23 GKVSLYVCGITAY-DYCHLGHARLMIVFDIVQRWLRI-NNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQE 100 (472)
Q Consensus 23 ~~v~~y~cgPt~~-g~lHiGhar~~v~~D~l~R~l~~-~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~ 100 (472)
++.....||--|+ |.+||||.-+++ .+. +|.. .|+++.+..+ |.. ..+.. ..+++++ .++...+..
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~---~~~-~lQ~~~G~~~iilIg--D~t-a~igd----~lt~e~i-~~n~~~~~~ 173 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFI---FTK-WLQDVFNVPLVIQMT--DDE-KYLWK----DLTLDQA-YGDAVENAK 173 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHH---HHH-HHHHHHTCCEEEEEC--HHH-HHHHS----SCCHHHH-HHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH---HHH-HHHHHhCCcEEEEEe--cce-eeecC----CCCHHHH-HHHHHHHHH
Confidence 4334556778888 899999976554 233 4554 7888766543 111 11111 3555554 355555667
Q ss_pred HHHHhCCCCC
Q psy14486 101 DSLLLHIQPP 110 (472)
Q Consensus 101 ~l~~LgI~~d 110 (472)
++-++|+.++
T Consensus 174 ~~lA~GlDp~ 183 (437)
T 1r6u_A 174 DIIACGFDIN 183 (437)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHhCCCcc
Confidence 7778888765
No 79
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=75.41 E-value=1.6 Score=44.31 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCc-CCcccchHHHHHHHHHHHHHHCCCceEEecC
Q psy14486 26 SLYVCGITAYDY-CHLGHARLMIVFDIVQRWLRINNYDVTYVRN 68 (472)
Q Consensus 26 ~~y~cgPt~~g~-lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~ 68 (472)
....||--|+|+ +||||+.+. -.+ +.+...|+++.++.+
T Consensus 33 ~~iy~G~dPTg~sLHLGhlv~l---~~l-~~lQ~~G~~~i~lIg 72 (432)
T 2jan_A 33 MTVYAGFDPTAPSLHAGHLVPL---LTL-RRFQRAGHRPIVLAG 72 (432)
T ss_dssp CEEEEEECCSSSSCBGGGHHHH---HHH-HHHHHTTCEEEEEEC
T ss_pred CEEEEeeCCCCCCcCHHHHHHH---HHH-HHHHHCCCcEEEEEc
Confidence 345678888896 999995433 234 444567999887753
No 80
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=74.85 E-value=3.2 Score=42.14 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=25.5
Q ss_pred EEEEcCCCCCCc-CCcccchHHHHHHHHHHHHHHCCCceEEecC
Q psy14486 26 SLYVCGITAYDY-CHLGHARLMIVFDIVQRWLRINNYDVTYVRN 68 (472)
Q Consensus 26 ~~y~cgPt~~g~-lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~ 68 (472)
....||--|+|+ +||||.-+ .-.+ +.+...|+++.+..+
T Consensus 38 ~~vy~G~dPTg~sLHlGh~v~---l~~l-~~lQ~~G~~~i~lIg 77 (432)
T 1h3f_A 38 LTVKLGADPTRPDLHLGHAVV---LRKM-RQFQELGHKVVLIIG 77 (432)
T ss_dssp CEEEEEECTTCCSCBHHHHHH---HHHH-HHHHHTTCEEEEEEC
T ss_pred cEEEEcccCCCCCCchhhHHH---HHHH-HHHHHCCCCEEEEEc
Confidence 345578888885 99999543 3334 444456999876544
No 81
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=74.54 E-value=1.6 Score=43.15 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=26.0
Q ss_pred EEEEcCCCCCCc-CCcccchHHHHHHHHHHHHHHCCCceEEec
Q psy14486 26 SLYVCGITAYDY-CHLGHARLMIVFDIVQRWLRINNYDVTYVR 67 (472)
Q Consensus 26 ~~y~cgPt~~g~-lHiGhar~~v~~D~l~R~l~~~G~~v~~v~ 67 (472)
....||--|+|+ +||||+.+.. .+ +.|...|+++.++.
T Consensus 47 ~~vy~G~~PTg~sLHLGhl~~l~---~~-~~lQ~~G~~~~~lI 85 (356)
T 2pid_A 47 QTIYCGFDPTADSLHVGHLLALL---GL-FHLQRAGHNVIALV 85 (356)
T ss_dssp CEEEEEECCSSSSCBHHHHHHHH---HH-HHHHHTTCEEEEEE
T ss_pred CEEEEeecCCCCcccHHHHHHHH---HH-HHHHHCCCcEEEEE
Confidence 455678888897 9999954332 33 44455799987765
No 82
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=73.88 E-value=1.9 Score=43.57 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=26.0
Q ss_pred EEEcCCCCCCc-CCcccchHHHHHHHHHHHHHHCCCceEEecC
Q psy14486 27 LYVCGITAYDY-CHLGHARLMIVFDIVQRWLRINNYDVTYVRN 68 (472)
Q Consensus 27 ~y~cgPt~~g~-lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~ 68 (472)
...||--|+|+ +||||.- ..-.++ .+...|+++.++.+
T Consensus 32 ~iy~G~dPTg~sLHlGh~v---~l~~l~-~lQ~~G~~~i~lIg 70 (419)
T 2ts1_A 32 TLYCGFDPTADSLHIGHLA---TILTMR-RFQQAGHRPIALVG 70 (419)
T ss_dssp EEEEEECCSSSSCBGGGHH---HHHHHH-HHHHTTCEEEEEEC
T ss_pred EEEEeeCCCCCCccHHHHH---HHHHHH-HHHHCCCcEEEEEc
Confidence 45678888888 9999944 333344 44567999877653
No 83
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=72.27 E-value=1.8 Score=42.22 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCc-CCcccchHHHHHHHHHHHHHHCCCceEEecC
Q psy14486 26 SLYVCGITAYDY-CHLGHARLMIVFDIVQRWLRINNYDVTYVRN 68 (472)
Q Consensus 26 ~~y~cgPt~~g~-lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~ 68 (472)
....||--|+|+ +||||.- ..-.+ +.+...|+++.++.+
T Consensus 34 ~~vy~G~~PTg~slHlGh~l---~l~~~-~~lQ~~g~~~~~~i~ 73 (322)
T 2yxn_A 34 IALVCGFDPTADSLHLGHLV---PLLCL-KRFQQAGHKPVALVG 73 (322)
T ss_dssp CEEEEEECCSSSSCBHHHHH---HHHHH-HHHHHTTCEEEEEEC
T ss_pred CEEEEeecCCCCcccHHHHH---HHHHH-HHHHHcCCcEEEEEc
Confidence 345678888899 9999944 33333 455566999877654
No 84
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=71.43 E-value=3.9 Score=40.08 Aligned_cols=78 Identities=28% Similarity=0.247 Sum_probs=44.9
Q ss_pred hhhhhhCCCceEeeeccCCcCchhHH--HHHHHhh-ccC---CC--CceEEEe--eeeE-Ee-cC-ccccccC---CCcc
Q psy14486 220 MSCYLLGSHFDIHGGGQDLKFPHHEN--EIAQSEG-AYK---HK--FVNYWMH--SGFV-KI-NN-KKMSKSF---GNFC 283 (472)
Q Consensus 220 m~~~~~g~~~dih~~G~Dl~fpH~~~--~~a~~~a-~~g---~~--~~~~~~h--~g~l-~~-~G-~KMSKS~---Gn~i 283 (472)
|+...+-...|+..+|.|.. ||.+. ++|.-.. .+| .. .|.-.++ +.+| -+ +| +|||||. +|.|
T Consensus 135 QaaDil~~~ad~vpvG~DQ~-~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I 213 (341)
T 3sz3_A 135 MAADILLYGAHQVPVGSDQK-QHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVI 213 (341)
T ss_dssp HHHHHHTTTCSEECCCGGGH-HHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCC
T ss_pred HHHHHHHcCCCEEEeccchH-HHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCee
Confidence 33344444678999999998 67665 3444322 123 12 2333333 1233 35 56 6999999 7899
Q ss_pred CHHHHHhhCChhhHHHHhhh
Q psy14486 284 TIRDLLKKYNPEVIRFFILR 303 (472)
Q Consensus 284 ~~~dll~~~~~d~lR~~ll~ 303 (472)
.+.| +|+.+|==+.+
T Consensus 214 ~L~D-----~p~~i~kKI~~ 228 (341)
T 3sz3_A 214 TLLE-----DPKSIIKKINK 228 (341)
T ss_dssp BTTC-----CHHHHHHHHHT
T ss_pred ecCC-----CHHHHHHHhhh
Confidence 7755 55555544444
No 85
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=70.91 E-value=1.9 Score=43.57 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=42.3
Q ss_pred EEEEcCCCCCCc-CCcccchHHHHHHHHHHHHHHCCCceEEecC-CC-cccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy14486 26 SLYVCGITAYDY-CHLGHARLMIVFDIVQRWLRINNYDVTYVRN-IT-DIDDKIIACAKKNNESIKTLTSRFIKAAQEDS 102 (472)
Q Consensus 26 ~~y~cgPt~~g~-lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~-~d-D~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 102 (472)
....||--|+|+ +||||.-+ .-.++ .+...|+++.++.+ .+ =++|+.-+...+.-.+++++. ++...+.+.+
T Consensus 33 ~~iy~G~dPTg~sLHlGh~v~---l~~~~-~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~-~n~~~~~~~~ 107 (420)
T 1jil_A 33 VTLYCGADPTADSLHIGHLLP---FLTLR-RFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVD-KNIEGISKQM 107 (420)
T ss_dssp CEEEEEECCSSSSCBHHHHHH---HHHHH-HHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH-HHHHHHHHHH
T ss_pred CEEEEeeCCCCCCccHHHHHH---HHHHH-HHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHH-HHHHHHHHHH
Confidence 345678888888 99999443 33344 44557999877653 22 122221000111112444443 5566677766
Q ss_pred HHhCCCC
Q psy14486 103 LLLHIQP 109 (472)
Q Consensus 103 ~~LgI~~ 109 (472)
.++ +.+
T Consensus 108 ~~~-ld~ 113 (420)
T 1jil_A 108 HNI-FEF 113 (420)
T ss_dssp HHH-SCC
T ss_pred HHH-hCC
Confidence 666 554
No 86
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=52.96 E-value=36 Score=36.56 Aligned_cols=77 Identities=14% Similarity=-0.010 Sum_probs=46.8
Q ss_pred CCCcCCcccchHHHHHHHHHHHHHHC-CCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCc
Q psy14486 34 AYDYCHLGHARLMIVFDIVQRWLRIN-NYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDY 112 (472)
Q Consensus 34 ~~g~lHiGhar~~v~~D~l~R~l~~~-G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~ 112 (472)
+.|.+||||+-++. -+++.+++.. |++|.+.. .|.-..|- .+.|.+++ -+..+...+.+++.++|.....-
T Consensus 390 s~g~lHLGh~v~~~--k~l~~~~~~~~g~~v~ilI--aD~~A~i~---d~~g~~~e-~i~~~~~y~~~~~~alG~d~k~~ 461 (690)
T 3p0j_A 390 ALLKVPLDVAEGMI--KVTKDFIAAHPEGTVTLVL--PDWSAVAS---DEITGVEK-DISAALQVNCALLKAYGLPSSVK 461 (690)
T ss_dssp CCSSCBHHHHHHHH--HHHHHHHHHCSSCEEEEEE--CTTHHHHT---TCTTCCHH-HHHHHHHHHHHHHHHHTCCTTSE
T ss_pred CCCCcccchHHHHH--HHHHHHHHHcCCCeEEEEE--ecchhhhC---CCCCCCHH-HHHHHHHHHHHHHHhcCCCcCeE
Confidence 78999999976653 2356777765 77776654 33322211 13345543 34456678889999999874322
Q ss_pred cccCCC
Q psy14486 113 QPCATN 118 (472)
Q Consensus 113 ~~r~s~ 118 (472)
+...|+
T Consensus 462 fv~~S~ 467 (690)
T 3p0j_A 462 IVTENE 467 (690)
T ss_dssp EEEHHH
T ss_pred EEECCc
Confidence 334443
No 87
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=27.12 E-value=47 Score=31.90 Aligned_cols=54 Identities=13% Similarity=-0.030 Sum_probs=41.4
Q ss_pred CCCceEEEEcCCCCC-----CcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccH
Q psy14486 21 TPGKVSLYVCGITAY-----DYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDD 74 (472)
Q Consensus 21 ~~~~v~~y~cgPt~~-----g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ 74 (472)
.++++.+.+.|||.= ..=-|+|..+--.+-.+++++..+|++|+++.+-+....
T Consensus 35 ~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl~p 93 (313)
T 1p9o_A 35 QGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFP 93 (313)
T ss_dssp TTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSCCT
T ss_pred cCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCcCc
Confidence 445557888999921 233578887777888899999999999999999766543
No 88
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=24.11 E-value=1.3e+02 Score=25.40 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCc--cccCCCcHHHHH
Q psy14486 47 IVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDY--QPCATNYIPQIL 124 (472)
Q Consensus 47 v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~--~~r~s~~~~~~~ 124 (472)
+-..+++..|+..||+|.+.-.-... +.++..+++ .+ +|.+ ....+.|.+.+.
T Consensus 33 iG~~~va~~l~~~G~eVi~lG~~~p~-e~lv~aa~~----------------------~~--~diV~lS~~~~~~~~~~~ 87 (161)
T 2yxb_A 33 RGAKVVARALRDAGFEVVYTGLRQTP-EQVAMAAVQ----------------------ED--VDVIGVSILNGAHLHLMK 87 (161)
T ss_dssp HHHHHHHHHHHHTTCEEECCCSBCCH-HHHHHHHHH----------------------TT--CSEEEEEESSSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCH-HHHHHHHHh----------------------cC--CCEEEEEeechhhHHHHH
Confidence 44667888999999999976432211 223333333 22 2222 223346788888
Q ss_pred HHHHHHHHCCC
Q psy14486 125 KMIEKLIFNGL 135 (472)
Q Consensus 125 ~~i~~L~~~G~ 135 (472)
++++.|.+.|.
T Consensus 88 ~~i~~L~~~g~ 98 (161)
T 2yxb_A 88 RLMAKLRELGA 98 (161)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhcCC
Confidence 88888888764
No 89
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=23.95 E-value=74 Score=24.09 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=19.2
Q ss_pred HHHHHHHhccChhHHHHHHHHHHH
Q psy14486 352 RFIIAMNDDFNTPVAISILFDLAN 375 (472)
Q Consensus 352 ~~~~al~dd~n~~~al~~l~~l~~ 375 (472)
-+..+|..|||+.+|+..+++--+
T Consensus 54 Lv~ailk~dfD~ekALd~vL~~~~ 77 (83)
T 1ufz_A 54 LTEAILKHKFDVQKALSVVLEQDG 77 (83)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHhccc
Confidence 356677899999999999887544
No 90
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=22.84 E-value=1.6e+02 Score=20.76 Aligned_cols=20 Identities=5% Similarity=-0.033 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHCCCcccc
Q psy14486 120 IPQILKMIEKLIFNGLAYQN 139 (472)
Q Consensus 120 ~~~~~~~i~~L~~~G~~y~~ 139 (472)
...+...++.|.+.|++...
T Consensus 39 r~tv~~~l~~L~~~G~I~~~ 58 (67)
T 2heo_A 39 KKTLNQVLYRLKKEDRVSSP 58 (67)
T ss_dssp HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHCCcEecC
Confidence 45678899999999998653
No 91
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=21.85 E-value=1e+02 Score=25.22 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCc--cccCCCcHHHHH
Q psy14486 47 IVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDY--QPCATNYIPQIL 124 (472)
Q Consensus 47 v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~--~~r~s~~~~~~~ 124 (472)
+-..+++.+|+..||+|.+.-.-.. -+.++..|++.+ ++.+ ....+.+.+.+.
T Consensus 18 iG~~~v~~~l~~~G~~Vi~lG~~~p-~e~~v~~a~~~~------------------------~d~v~lS~~~~~~~~~~~ 72 (137)
T 1ccw_A 18 VGNKILDHAFTNAGFNVVNIGVLSP-QELFIKAAIETK------------------------ADAILVSSLYGQGEIDCK 72 (137)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEC-HHHHHHHHHHHT------------------------CSEEEEEECSSTHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCC-HHHHHHHHHhcC------------------------CCEEEEEecCcCcHHHHH
Confidence 4456788999999999998754211 123334444322 2222 122246677788
Q ss_pred HHHHHHHHCCC
Q psy14486 125 KMIEKLIFNGL 135 (472)
Q Consensus 125 ~~i~~L~~~G~ 135 (472)
++++.|.++|.
T Consensus 73 ~~i~~l~~~g~ 83 (137)
T 1ccw_A 73 GLRQKCDEAGL 83 (137)
T ss_dssp THHHHHHHTTC
T ss_pred HHHHHHHhcCC
Confidence 88888877764
No 92
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=21.81 E-value=57 Score=31.40 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.5
Q ss_pred cccchHHHHHHHHHHHHHHCCCceEEecC
Q psy14486 40 LGHARLMIVFDIVQRWLRINNYDVTYVRN 68 (472)
Q Consensus 40 iGhar~~v~~D~l~R~l~~~G~~v~~v~~ 68 (472)
.||..+++ -|+|.|+.+|++|++++.
T Consensus 33 ~GHv~P~l---~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 33 LSHILPTV---PLAQALRALGHEVRYATG 58 (400)
T ss_dssp HHHHGGGH---HHHHHHHHTTCEEEEEEC
T ss_pred hhHHHHHH---HHHHHHHHCCCEEEEEeC
Confidence 39999887 489999999999999874
Done!