RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14486
(472 letters)
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 661 bits (1708), Expect = 0.0
Identities = 248/482 (51%), Positives = 315/482 (65%), Gaps = 32/482 (6%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
L+IYN+ +R+K+ F P+ PGKV +YVCG T YDY H+GHAR +VFD+++R+LR Y
Sbjct: 2 MLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYK 61
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
VTYVRNITDIDDKII A + ESIK LT R+I A ED L++ PPD +P AT +IP+
Sbjct: 62 VTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPE 121
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR----LISSNFNKINEKNN 178
I+++IE+LI G AY+ +GDV + VR F +YGKLSGR L + ++ E+
Sbjct: 122 IIELIERLIDKGHAYE-----ADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEE-- 174
Query: 179 FKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDL 238
K+DPLDFALWK +K +P W S WG GRPGWHIECSAMS LG FDIHGGG DL
Sbjct: 175 -KRDPLDFALWKAAKPGEPS---WESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADL 230
Query: 239 KFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIR 298
FPHHENEIAQSE A F NYWMH+GFV +N +KMSKS GNF TIRDLLKKY+PEV+R
Sbjct: 231 IFPHHENEIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLR 290
Query: 299 FFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDI-PKINYKKIIDLNEPHAKRFIIAM 357
FF+L +HYRS +N+SE L AKK+L RLY A+ + + + ++ E +RFI AM
Sbjct: 291 FFLLSAHYRSPLNFSEEALEQAKKALERLYNALAETALGEDDEALLAELEEFKERFIEAM 350
Query: 358 NDDFNTPVAISILFDLANIINKNKSIK-------MAKQLRGLGNWLGLLEYSSDEFLKNN 410
+DDFNTP A+++LF+LA IN+ K +A LR L + LGL + F
Sbjct: 351 DDDFNTPEALAVLFELAREINRALETKDKEAAAALAALLRALADVLGLEQDEEALF---- 406
Query: 411 IYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWR 470
+ +I+ I R EARK K+F AD IR EL GI+LED P+G T WR
Sbjct: 407 ----EAAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDTPDGTT-WR 461
Query: 471 RI 472
R
Sbjct: 462 RK 463
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 589 bits (1520), Expect = 0.0
Identities = 231/479 (48%), Positives = 299/479 (62%), Gaps = 24/479 (5%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
L++YN+ +R+K+ F PI PGKV +YVCG T YDY H+GHAR +VFD+++R+LR Y
Sbjct: 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK 60
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
VTYVRNITDIDDKII A++ SI+ + R+I A ED L++ PPD +P AT +I +
Sbjct: 61 VTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDE 120
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR--LISSNFNKINEKNNFK 180
I++ IEKLI G AY +GDV + V F +YGKLSGR L E + K
Sbjct: 121 IIEFIEKLIEKGYAYV----ADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEK 176
Query: 181 KDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKF 240
++PLDF LWK +K +P W+S WG GRPGWHIECSAMS LG FDIHGGG DL F
Sbjct: 177 RNPLDFVLWKAAKPGEPS---WDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF 233
Query: 241 PHHENEIAQSEGAY-KHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
PHHENEIAQSE A F YWMH+GF+ I+ +KMSKS GNF T+RDLLKKY+PEV+R
Sbjct: 234 PHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRL 293
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
F+L SHYRS +++SE L AKK+L RLY A++ + + + + RF A++D
Sbjct: 294 FLLSSHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGDAELADLKEFEARFREALDD 353
Query: 360 DFNTPVAISILFDLANIINKNKSIKM------AKQLRGLGNWLGLLEYSSDEFLKNNIYT 413
DFNTP A+++LF+LA IN+ L+ L LGL
Sbjct: 354 DFNTPKALAVLFELAKEINRLLEEGKSDAKAVLSALKALLAILGLKVLGLFPQSG----- 408
Query: 414 ERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
+ + +I+ I R EARK KN+ AD+IR EL+ GIILED P+G T WRR
Sbjct: 409 --AQEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPDG-TTWRRK 464
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 516 bits (1330), Expect = 0.0
Identities = 221/480 (46%), Positives = 300/480 (62%), Gaps = 28/480 (5%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L++YN+ +R+K+ F P+ GKV +YVCG T YDYCH+GHAR IVFD+++R+LR Y V
Sbjct: 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKV 60
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
YV+NITDIDDKII A++N ES+ ++ RFI+A ED L++ PPD +P AT +I +I
Sbjct: 61 QYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEI 120
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKD 182
++ IE+LI G AY ++NG DV + V F +YGKLS + + + + K++
Sbjct: 121 IEFIEQLIEKGYAYVSDNG----DVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRN 176
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
LDF LWK SK E +W+S WG GRPGWHIECSAM+ LG DIHGGG DL FPH
Sbjct: 177 KLDFVLWKSSK---EGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPH 233
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQSE A+ + YWMH+GF+ I+N+KMSKS GNF T+RD+LK Y+PE++R+F+L
Sbjct: 234 HENEIAQSEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLL 293
Query: 303 RSHYRSTINYSEIYLNYAKKSLIRLYLAIK------DIPKINYKKIIDLNEPHAKRFIIA 356
HYRS +++SE L AK +L RLY A++ + RF+ A
Sbjct: 294 SVHYRSPLDFSEELLEAAKNALERLYKALRVLDTSLAYSGNQSLNKFPDEKEFEARFVEA 353
Query: 357 MNDDFNTPVAISILFDLANIINKNKSIK-----MAKQLRGLGNWLGLLEYSSDEFLKNNI 411
M+DD NT A+++LF+LA IN K + + L L + LGLL + +
Sbjct: 354 MDDDLNTANALAVLFELAKSINLTFVSKADAALLIEHLIFLESRLGLLLGLPSKPV---- 409
Query: 412 YTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
+ N +I+ I RS ARK K+F +AD+IR EL GI+LED P G T WRR
Sbjct: 410 ----QAGSNDDLGEIEALIEERSIARKEKDFAKADEIRDELAKKGIVLEDTPQG-TTWRR 464
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 472 bits (1215), Expect = e-161
Identities = 242/483 (50%), Positives = 318/483 (65%), Gaps = 31/483 (6%)
Query: 6 IYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTY 65
IYN+ +R+K+ F PI P V +YVCG+T YDYCHLGHAR+M+VFD++ RWLR Y +TY
Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTY 289
Query: 66 VRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILK 125
VRNITDIDDKIIA A +N E+I LT+RFI+A ED+ L + PD +P AT IPQ++
Sbjct: 290 VRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIA 349
Query: 126 MIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKDPL 184
MIE LI NG AY NGDV Y+VR F YG+LSG+ + + E + FK+DPL
Sbjct: 350 MIETLIQNGKAYP----AANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPL 405
Query: 185 DFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHE 244
DF LWK +K +P W S WG GRPGWHIECSAMS L G FDIHGGG DL+FPHHE
Sbjct: 406 DFVLWKAAKAGEP---AWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHE 462
Query: 245 NEIAQSEGAYKH----------------KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDL 288
NEIAQS GA H V YW+H+GF++++ +KMSKS GNF TIR++
Sbjct: 463 NEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREV 522
Query: 289 LKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEP 348
LK+Y+PEV+RFFILR+HYRS +NYS+ +L+ AK +L RLY +K+ P + ++N+
Sbjct: 523 LKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFMLSENVND- 581
Query: 349 HAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLK 408
+ +RF AMNDDF T A+++LF+LA +NK ++A L+ LG +GLL+ EFL+
Sbjct: 582 YTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQRDPTEFLQ 641
Query: 409 NNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTE 468
++ S +I+ I R +AR KN+ E+D+IR L + IILED G T
Sbjct: 642 GGAASD-----GLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDNAGGTT- 695
Query: 469 WRR 471
WRR
Sbjct: 696 WRR 698
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 431 bits (1109), Expect = e-147
Identities = 209/497 (42%), Positives = 302/497 (60%), Gaps = 43/497 (8%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L +YN+ SRKK++F P GKV +YVCG+TAYD H+GHAR+ + FD++ R+L+ Y+V
Sbjct: 60 LHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEV 119
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
YVRN TD+DDKIIA A + E +L+ R+ + D LH PP +P +++IPQI
Sbjct: 120 RYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQI 179
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEK---NNFK 180
+ MI++++ NG AY +++GDV +SV F YGKLSGR + N + E+ ++ K
Sbjct: 180 IDMIKQILDNGCAY-----RVDGDVYFSVDKFPEYGKLSGRKLEDN--RAGERVAVDSRK 232
Query: 181 KDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKF 240
K+P DFALWK +K +P+ W+S WG GRPGWHIECSAMS LG FDIHGGG DL F
Sbjct: 233 KNPADFALWKAAKEGEPF---WDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF 289
Query: 241 PHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFF 300
PHHENEIAQS A ++YW+H+GFV ++++KMSKS GNF TIR ++ Y+P +R F
Sbjct: 290 PHHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLF 349
Query: 301 ILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKI------NYKK-------IIDLNE 347
+L +HYRS INYS++ L A + + +Y + D + ++K + +N+
Sbjct: 350 LLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINK 409
Query: 348 PHAKRFIIAMNDDFNTPVAISILFDLANIIN----KNKSIKMAKQLRGLG---------- 393
H + F+ +M+DD +TPVA++ L + IN K K K+L L
Sbjct: 410 FHDE-FVTSMSDDLHTPVALAALSEPLKTINDLLHTRKGKKQEKRLESLAALEKKIRDVL 468
Query: 394 NWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELV 453
+ LGL+ S E L+ + + + +E + KI R+ ARK K + ++D IR++L
Sbjct: 469 SVLGLMPTSYSEALQ-QLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLA 527
Query: 454 NNGIILEDMPNGKTEWR 470
GI L D P+G T WR
Sbjct: 528 AVGIALMDSPDG-TTWR 543
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 419 bits (1079), Expect = e-146
Identities = 158/308 (51%), Positives = 209/308 (67%), Gaps = 8/308 (2%)
Query: 16 IFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDK 75
F P+ GKV++YVCG T YD H+GHAR + FD+++R+L+ YDV +V+N TDIDDK
Sbjct: 1 FFVPLHQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDK 60
Query: 76 IIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGL 135
II A++ ES + L +RFI A +D L++ PPD +P T +I +I++ IE+LI G
Sbjct: 61 IIKRAQQQGESFRELAARFITAYTKDMDALNVLPPDLEPRVTEHIDEIIEFIERLIKKGY 120
Query: 136 AYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNFKKDPLDFALWKVSKN 194
AY ++NG DV + V +F +YGKLSG+ + E K+DPLDFALWK SK
Sbjct: 121 AYVSDNG----DVYFDVSSFPDYGKLSGQNLEQLEAGARGEVGEGKRDPLDFALWKASK- 175
Query: 195 NDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAY 254
E W+S WG GRPGWHIECSAM+ LGS DIHGGG DLKFPHHENEIAQSE A+
Sbjct: 176 --EGEPSWDSPWGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKFPHHENEIAQSEAAF 233
Query: 255 KHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSE 314
+ YW+H+G + I +KMSKS GNF TIRD+LK+Y+P ++R+F+L HYRS +++SE
Sbjct: 234 DQQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRYFLLSVHYRSPLDFSE 293
Query: 315 IYLNYAKK 322
L AK
Sbjct: 294 ELLEQAKN 301
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 353 bits (909), Expect = e-116
Identities = 186/522 (35%), Positives = 261/522 (50%), Gaps = 66/522 (12%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLR-INNYD 62
L++ NS + K F P +V Y CG T YD HLGHAR + FDI++R L YD
Sbjct: 40 LKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYD 99
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKT-LTSRFIKAAQEDSLLLHIQPPDYQPCATNYIP 121
V YV NITDIDDKII A++ SI L ++ K ED L+++PPD + Y+P
Sbjct: 100 VFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVP 159
Query: 122 QILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKL------SGRLISSNFNKINE 175
+I+ I+K+I NG AY++N G + DV + Y KL I+ + +
Sbjct: 160 EIVDFIQKIIDNGFAYESN-GSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEGALGK 218
Query: 176 KNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGG 235
+ K+ P DFALWK SK +P W+S WG GRPGWHIECSAM+ +LG DIH GG
Sbjct: 219 VSGEKRSPNDFALWKASKPGEP---SWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGG 275
Query: 236 QDLKFPHHENEIAQSEGAY-KHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNP 294
DLKFPHH+NE+AQSE + KH++VNY++HSG + I KMSKS NF TIR L KY
Sbjct: 276 IDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTA 335
Query: 295 EVIRFFILRSHYRSTINYSEIYLNYAKK---------SLIRLYLAIKDIPKINYKKIID- 344
IR L + +NYS+ ++ A + + +++ L ++ D
Sbjct: 336 RQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDF 395
Query: 345 --LNEPHAKRFII--AMNDDFNTPVAISILFDL---ANI-INKNKSIKMAKQLRGLGNW- 395
+ + A+ D+F+TP A+ L L N +N + A LR + +
Sbjct: 396 ELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYLNSGEQPS-APLLRSVAQYV 454
Query: 396 ------LGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLK---IYFRSEAR--------- 437
GL+E + + + SEN L + FR E R
Sbjct: 455 TKILSIFGLVE--------GSDGLGSQGQNSTSENFKPLLEALLRFRDEVRDAAKAEMKL 506
Query: 438 -----KRKNFLEA-DKIRQE-LVNNGIILEDMPNGKTEWRRI 472
K+K L+ DK+R E L N GI +ED P+G + W+
Sbjct: 507 ISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLD 548
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 304 bits (779), Expect = 2e-98
Identities = 172/511 (33%), Positives = 254/511 (49%), Gaps = 65/511 (12%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
LR+YN+ R+++ F PI G V LY CG T Y+Y H+G+ R + D ++R L Y V
Sbjct: 3 LRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRV 62
Query: 64 TYVRNITDI----------DDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQ 113
T+V NITD+ +DK++ A+++ +S+ + + + A D+ L+I+ P
Sbjct: 63 THVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIV 122
Query: 114 PCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKI 173
AT +I ++ +I++L G Y G+V + +R F +YG L S+ +
Sbjct: 123 CNATEHIQDMIALIKRLEARGHTYC-----AGGNVYFDIRTFPSYG----SLASAAVEDL 173
Query: 174 N-----EKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSH 228
E + K++P DF LW + + + W+S WG G PGWHIECSAMS LG
Sbjct: 174 QAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQ 233
Query: 229 FDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDL 288
DIH GG D HH NEIAQ E A +V YW+H F+ +N KMSKS G F T+ L
Sbjct: 234 CDIHIGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSL 293
Query: 289 LKK-YNPEVIRFFILRSHYRSTINYSEIYLNYAK---KSLI----RLYLAIKDIPKINYK 340
+K + P RFF+L HYRS + +S L AK +SL+ R+ A +
Sbjct: 294 QEKGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRG 353
Query: 341 KIID-LNEPHAK-----------RFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQ 388
+ + E A+ F A+ DDF+TP A+S L L K+ S+ +
Sbjct: 354 TLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLV----KDTSVPPSLC 409
Query: 389 L-------RGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKN 441
L LG LGL++ ++ + SE +I I R+ AR+ K+
Sbjct: 410 LSVLQAMDTVLG--LGLIQEATAS-------LSAQVPAGPSEEEIGQLIEARAHARQTKD 460
Query: 442 FLEADKIRQELVNNGIILEDMPNGKTEWRRI 472
F AD+IR +L GI LED G T W+R+
Sbjct: 461 FPLADEIRDKLKAEGIELEDTHLG-TIWKRV 490
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 251 bits (644), Expect = 4e-79
Identities = 126/388 (32%), Positives = 200/388 (51%), Gaps = 32/388 (8%)
Query: 1 MSTLRIYNSFSRKKQIFYPITPG-KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRIN 59
LR++++ + + P+ PG + +YVCGIT YD HLGHA + FD+V R R
Sbjct: 15 GPPLRLFDTADGQVR---PVEPGPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDA 71
Query: 60 NYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNY 119
+ V YV+N+TD+DD + A+++ + L + I +ED L + PP A
Sbjct: 72 GHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVES 131
Query: 120 IPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNN- 178
I ++++M+EKL+ +G AY G DV +S+ +G SG ++ E+
Sbjct: 132 IDEVVEMVEKLLASGAAYIVE-GPEYPDVYFSIDATEQFGYESGYDRATMLELFAERGGD 190
Query: 179 ----FKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGG 234
K+DPLD LW+ ++ +P W+S +G GRPGWHIECSA++ LG+ FDI GG
Sbjct: 191 PDRPGKRDPLDALLWRAAREGEP---SWDSPFGRGRPGWHIECSAIALNRLGAGFDIQGG 247
Query: 235 GQDLKFPHHENEIAQSEGAYK-HKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK-Y 292
G DL FPHHE A +E A + +++H+G + ++ +KMSKS GN + L
Sbjct: 248 GSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGV 307
Query: 293 NPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDL-NEPHAK 351
+P IR +L HYR ++++ L A+ L R ++ + L + P A
Sbjct: 308 DPAAIRLGLLAGHYRQDRDWTDAVLAEAEARLAR------------WRAALALPDAPDAT 355
Query: 352 RFIIAMN----DDFNTPVAISILFDLAN 375
I + +D +TP A++ + A
Sbjct: 356 DLIARLRQHLANDLDTPAALAAVDGWAA 383
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 248 bits (635), Expect = 4e-78
Identities = 120/329 (36%), Positives = 174/329 (52%), Gaps = 38/329 (11%)
Query: 19 PITPG-KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKII 77
P+ PG ++YVCGIT YD HLGHA + FD+V R R +DV YV+N+TD+DD ++
Sbjct: 3 PVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLL 62
Query: 78 ACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAY 137
A ++ + L R I +ED L + PP A IP++++++EKL+ +G AY
Sbjct: 63 ERAARDGVDWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAY 122
Query: 138 QNNNGKINGDVNYSVRNFLNYGKLSG-------RLISSNFNKINEKNNF----------- 179
+ + DV +SV +G SG L F
Sbjct: 123 VVD-DEEYPDVYFSVDATPQFGYESGYDRATMLEL-------------FAERGGDPDRPG 168
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K+DPLD LW+ ++ +P W S +G GRPGWHIECSA++ LGS FDI GGG DL
Sbjct: 169 KRDPLDALLWRAARPGEP---SWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLI 225
Query: 240 FPHHENEIAQSEGAYK-HKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLK-KYNPEVI 297
FPHHE A +E A +F +++H+G + ++ +KMSKS GN + L +P I
Sbjct: 226 FPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAI 285
Query: 298 RFFILRSHYRSTINYSEIYLNYAKKSLIR 326
R +L HYR+ +++ L A+ L R
Sbjct: 286 RLALLAGHYRADREWTDAVLAEAEARLAR 314
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 201 bits (513), Expect = 3e-62
Identities = 64/101 (63%), Positives = 77/101 (76%)
Query: 213 WHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINN 272
WHIECSAM+ LG FDIHGGG DL FPHHENEIAQSE A F YW+H+G + I+
Sbjct: 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG 172
Query: 273 KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYS 313
+KMSKS GNF T+RD LKKY+PEV+R +L SHYRS +++S
Sbjct: 173 EKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213
Score = 156 bits (396), Expect = 4e-45
Identities = 53/110 (48%), Positives = 74/110 (67%)
Query: 5 RIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVT 64
R+YN+ +R+K+ F P+ PG V++YVCG T YDY H+GHAR +VFD+++R+L Y V
Sbjct: 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVR 60
Query: 65 YVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQP 114
YV+NITDIDDKII A++ S K + + K ED L++ PPD P
Sbjct: 61 YVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLPPDVVP 110
>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 481
Score = 192 bits (489), Expect = 1e-55
Identities = 146/497 (29%), Positives = 242/497 (48%), Gaps = 59/497 (11%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L++YN+ + K + V +Y CG T Y+Y H+G+ R I D++ + LR+ Y+V
Sbjct: 3 LKLYNT--KTKDLSELKNFSDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNV 60
Query: 64 TYVRNITDI----------DDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQ 113
Y NITDI +DK++ A++ ++ ++ F +A +D L+I PD
Sbjct: 61 NYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKV 120
Query: 114 PCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSG-RLISSNFNK 172
A+ YIP ++++++ L NG Y +NG+V + F +YG+++G L
Sbjct: 121 LVASEYIPIMIEVVKVLEENGFTY-----FVNGNVYFDTSCFKSYGQMAGINLNDFKDMS 175
Query: 173 IN--EKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFD 230
++ E + K++ DF LW + E++W+S WG G P WH+EC+AM+ S D
Sbjct: 176 VSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLD 235
Query: 231 IHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLK 290
IH GG D HH NEIA +E K+ + ++H F+ + +KMSKS NF TI+DL
Sbjct: 236 IHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLED 295
Query: 291 K-YNPEVIRFFILRSHYRSTINYS-----------EIYLN-----YAKKSLIRLYLAIKD 333
+ ++P R+F L +HYR+ + ++ E LN Y+ L L KD
Sbjct: 296 QGFSPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKD 355
Query: 334 IPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLG 393
+ I + L + + F+ + D N P +++L+D I K+ ++ +LR
Sbjct: 356 LENIEFS----LEKEYYDSFLEKIAFDLNIPQGLALLWD----IIKDDNLSFLSKLR--- 404
Query: 394 NWLGLLEYSSDEFLKNNIYTE-----RKKNVNYSENDIKLKIYFRSEARKRKNFLEADKI 448
L + DE L + E + +N +K I R A+ K+F AD+I
Sbjct: 405 -----LAFKFDEVLSLGLREEILREIENHRIVIDDN-MKSLIEERRLAKCEKDFKRADEI 458
Query: 449 RQELVNNGIILEDMPNG 465
R+ + G +L D G
Sbjct: 459 REYFASKGFVLIDTEEG 475
>gnl|CDD|153417 cd07963, Anticodon_Ia_Cys, Anticodon-binding domain of cysteinyl
tRNA synthetases. This domain is found in cysteinyl
tRNA synthetases (CysRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. CysRS catalyzes the
transfer of cysteine to the 3'-end of its tRNA.
Length = 156
Score = 174 bits (443), Expect = 1e-52
Identities = 69/161 (42%), Positives = 94/161 (58%), Gaps = 14/161 (8%)
Query: 317 LNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANI 376
L A+ +L RLY A++ +P ID EP A+RFI AM+DDFNTP A+++LF+LA
Sbjct: 4 LEDARAALERLYTALRGVPPTTVD--IDWGEPFAERFIAAMDDDFNTPEALAVLFELARE 61
Query: 377 INKNK------SIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKI 430
IN+ K + +A L+ LG LGLL+ + FL+ S +I+ I
Sbjct: 62 INRLKKEDIEKAAALAALLKALGGVLGLLQQDPEAFLQGGT-----GEGGLSVAEIEALI 116
Query: 431 YFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
R++ARK K++ EAD+IR EL GIILED P G T WRR
Sbjct: 117 AQRNQARKAKDWAEADRIRDELAAQGIILEDSPEG-TTWRR 156
>gnl|CDD|204161 pfam09190, DALR_2, DALR domain. This DALR domain is found in
cysteinyl-tRNA-synthetases.
Length = 62
Score = 81.1 bits (201), Expect = 3e-19
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 352 RFIIAMNDDFNTPVAISILFDLANIINKNKSIKM------AKQLRGLGNWLGLLEYSSDE 405
RFI AM+DDFNTP AI++LF+LA IN+ K+ A LR LG LGLL+ +
Sbjct: 1 RFIEAMDDDFNTPEAIAVLFELAKEINRLKTTDGAAAAALAALLRALGGVLGLLQQDPEA 60
Query: 406 FL 407
FL
Sbjct: 61 FL 62
>gnl|CDD|214848 smart00840, DALR_2, This DALR domain is found in
cysteinyl-tRNA-synthetases.
Length = 56
Score = 68.4 bits (168), Expect = 8e-15
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 352 RFIIAMNDDFNTPVAISILFDLANIINKNKSI--------KMAKQLRGLGNWLGLL 399
RF AM+DDFNTP A+++LF+LA IN+ +A LR LG LGLL
Sbjct: 1 RFEEAMDDDFNTPEALAVLFELAREINRLALKATDAEELAALAALLRALGGVLGLL 56
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 65.6 bits (160), Expect = 6e-13
Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 22/151 (14%)
Query: 28 YVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESI 87
GIT Y H+GH R ++ FD + + R Y V + I D I A K E+
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENA 61
Query: 88 KTLTSRFIKAAQE----------DSLLLHIQPPDYQPCATN---YIPQILKMIEKLIFNG 134
K R+I+ +E D LLL+ D ++ +I L++++K
Sbjct: 62 KAFVERWIERIKEDVEYMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPA 121
Query: 135 LAYQNNNGKINGDVNYSVRNFLNYGKLSGRL 165
+ G++ G K+S
Sbjct: 122 RPFGLTFGRVMGADG---------TKMSKSK 143
Score = 54.4 bits (131), Expect = 5e-09
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 212 GWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKI- 270
+ +A L + DIH GG D H E + + A + + G V
Sbjct: 77 EYMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGG-PARPFGLTFGRVMGA 134
Query: 271 NNKKMSKS 278
+ KMSKS
Sbjct: 135 DGTKMSKS 142
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 56.8 bits (138), Expect = 2e-08
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 265 SGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKS 323
+GFV + KKMSKS GN +R +++Y +V+R ++ S ++ E + ++
Sbjct: 568 NGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRRQ 627
Query: 324 LIRLYLAIKDIPKIN---YKKIID------LNEPHAKRFIIAMNDDFNTPVAI-SILFDL 373
L R Y K++ +I + ID LN K AM + F T A+ ++L
Sbjct: 628 LERFYELAKELIEIGGEEELRFIDKWLLSRLNR-IIKETTEAM-ESFQTRDAVQEAFYEL 685
Query: 374 ANIIN 378
N +
Sbjct: 686 LNDLR 690
Score = 31.4 bits (72), Expect = 1.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTY 65
H+GH R + D++ R+ R+ Y+V +
Sbjct: 2 HVGHGRTYTIGDVIARYKRMRGYNVLF 28
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 53.2 bits (128), Expect = 1e-07
Identities = 61/309 (19%), Positives = 99/309 (32%), Gaps = 64/309 (20%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITD--------------IDDKIIACAKKNN 84
HLGHA I+ D + R+ R+ Y+V ++ D K ++
Sbjct: 16 HLGHALTHIIADFIARYKRMRGYEVPFLPG-WDTHGLPIELKAERKGGRKKKTIWIEEFR 74
Query: 85 ESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIE----KLIFNGLAYQNN 140
E K +ED L I T P+ K +E +L GL Y
Sbjct: 75 EDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTE-PEYSKAVELIFSRLYEKGLIY--- 130
Query: 141 NGKINGDVNYSVRN----FLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNND 196
G + VR F + K +L+ K + + + + ++
Sbjct: 131 RGT------HPVRITEQWFFDMPKFKEKLL-----KALRRGKIVPEHVKNRMEAWLESLL 179
Query: 197 PYEIRWNSKWGAGRPGWHIE----CSAMSCYLLGSHF-----------DIHGGGQDLKFP 241
+ I WG P + LG D H G+D+
Sbjct: 180 DWAISRQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRG 239
Query: 242 HHENEIAQSEGA-----YKHKFVNYWMHSGFVKINN-KKMSKSFGNFCTIRDLLKKYNPE 295
I K+ V+ GFV +KMSKS GN D+++KY +
Sbjct: 240 WANFWITMLVALFGEIPPKNLLVH-----GFVLDEGGQKMSKSKGNVIDPSDVVEKYGAD 294
Query: 296 VIRFFILRS 304
+R+++
Sbjct: 295 ALRYYLTSL 303
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 53.3 bits (128), Expect = 2e-07
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAKKSL 324
G+V + KKMSKS GN T+ ++K+ +V R +I + ++ E + L
Sbjct: 612 GYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRL 671
Query: 325 IRLYLAIKDIPKI 337
RLY ++I K
Sbjct: 672 ERLYEFAEEITKE 684
Score = 30.9 bits (70), Expect = 1.9
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 34 AYDY----CHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKT 89
AY Y H GH R + ++ R+ R+ +V + I+ A+ IK
Sbjct: 32 AYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAEL----IKR 87
Query: 90 LTSRFIKAAQE 100
IK E
Sbjct: 88 RDELTIKNYTE 98
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 50.7 bits (122), Expect = 9e-07
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 22/136 (16%)
Query: 265 SGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR------------SHYRSTINY 312
GF+ + +KMSKS GN +LL++Y + +R+++ R + +N
Sbjct: 324 HGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNA 383
Query: 313 SEI--YLNYAKKSL--IRLYL-----AIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNT 363
N A ++L I Y A ++++ L + AM + +
Sbjct: 384 DLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEF 442
Query: 364 PVAISILFDLANIINK 379
A+ + LA+ NK
Sbjct: 443 RKALEEIMALASRANK 458
Score = 35.3 bits (82), Expect = 0.061
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDD---KIIACAKKNNESIKTLTSRFI 95
HLGH + D+ R+LR+ Y+V ++ T D+ KI A+K + + L +
Sbjct: 21 HLGHLYTYLAADVYARYLRLRGYEVFFL---TGTDEHGTKIELKAEKEGITPQELVDKNH 77
Query: 96 KAAQEDSLLLHI 107
+ +E L+I
Sbjct: 78 EEFKELFKALNI 89
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 50.0 bits (120), Expect = 2e-06
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 266 GFV-KINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR-SHYRSTINYSEIYLNYAKKS 323
G V +KMSKS GN + ++KY + +R +I+ + + +SE + A++
Sbjct: 570 GMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRF 629
Query: 324 LIRLYLAIKDIPKINYKKIIDLNEPHAK----RFIIAMNDD------FNTPVAISILFDL 373
L R++ +K+ + +++ + R I + +D FNT AI+ L +L
Sbjct: 630 LQRVWNLVKEHLEKLVEELTKEQGKEDRWLLHRTIKKVTEDFEARQTFNT--AIAALMEL 687
Query: 374 ANIINK 379
N + K
Sbjct: 688 LNALRK 693
Score = 33.0 bits (76), Expect = 0.40
Identities = 30/134 (22%), Positives = 44/134 (32%), Gaps = 44/134 (32%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDV----------TYVRNITDIDDKIIACAKKNNESIK 88
H+GH R + D++ R+ R+ Y+V A K
Sbjct: 50 HVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGL----------PAENAAIKIGTDPA 99
Query: 89 TLTSRFIKAAQED--SLLLHIQ--------PPDYQPCATNYIP-QILKMIEKLIFNGLAY 137
T I ++ SL I P+Y +I Q LK+ EK GLAY
Sbjct: 100 KWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYY----KWIQWQFLKLYEK----GLAY 151
Query: 138 QNNNGKINGDVNYS 151
+ VN+
Sbjct: 152 RK-----EAPVNWC 160
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 48.7 bits (117), Expect = 3e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 253 AYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303
+ G++ + KKMSKS GN DLL++Y + +R+++LR
Sbjct: 259 GAGLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLR 309
Score = 34.4 bits (80), Expect = 0.095
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYV 66
HLGH ++ D+ R+ R+ YDV +V
Sbjct: 16 HLGHLYGTVLADVFARYQRLRGYDVLFV 43
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 47.6 bits (114), Expect = 7e-06
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 264 HSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
G V + +KMSKS GN T + +KKY + R +IL +
Sbjct: 265 VQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFA 305
Score = 33.4 bits (77), Expect = 0.25
Identities = 16/63 (25%), Positives = 25/63 (39%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAA 98
H+GH R + DI+ R+ R+ Y+V + A K + T IK
Sbjct: 16 HVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKM 75
Query: 99 QED 101
+E
Sbjct: 76 KEQ 78
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 48.2 bits (116), Expect = 8e-06
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 265 SGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
GF+ + KMSKS G F R L +P+ +R+++
Sbjct: 320 HGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYL 356
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I
lysyl tRNA synthetase. Class I lysyl tRNA synthetase
(LysRS) catalytic core domain. This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. The class I LysRS is found only in archaea and
some bacteria and has evolved separately from class II
LysRS, as the two do not share structural or sequence
similarity.
Length = 353
Score = 45.8 bits (109), Expect = 3e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 271 NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
KMS S GN T D L+ PEV+R+ R
Sbjct: 272 GGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARR 305
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 44.5 bits (106), Expect = 7e-05
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 265 SGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303
G++ + KMSKS GN +LL +Y + +R+++ R
Sbjct: 315 HGWLTVEGGKMSKSRGNVVDPDELLDRYGVDALRYYLAR 353
Score = 36.8 bits (86), Expect = 0.019
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDD---KIIACAKKNNESIKTLTSRFI 95
H+GH I D+ R+LR+ YDV +V T D+ KI A+K + + L R+
Sbjct: 15 HIGHLYTTIPADVYARYLRLRGYDVLFV---TGTDEHGTKIELAAEKEGVTPQELVDRYH 71
Query: 96 KAAQED 101
+ +E
Sbjct: 72 EEFKEL 77
>gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 44.6 bits (106), Expect = 8e-05
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 271 NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
KMS S GN ++ D L+ PEV+R+ I R+
Sbjct: 274 GGGKMSSSKGNVISLSDWLEVAPPEVLRYLIART 307
>gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family
includes only lysyl tRNA synthetases from prokaryotes.
Length = 357
Score = 44.1 bits (105), Expect = 8e-05
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 273 KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
KMS S GN TI D L+ PE +RF + R
Sbjct: 278 GKMSSSKGNVITIEDWLEYAPPESLRFLMFRV 309
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 43.7 bits (104), Expect = 2e-04
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 265 SGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303
S ++ + K SKS G + D L++Y P+ +R+++
Sbjct: 325 SEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAA 363
>gnl|CDD|232987 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form a
separate orthologous set [Protein synthesis, tRNA
aminoacylation].
Length = 515
Score = 43.4 bits (102), Expect = 2e-04
Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 33/227 (14%)
Query: 246 EIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSH 305
EI Q W+ +K KMS S G+ +++D+L+ Y PE+ RF R+
Sbjct: 251 EIFQYSPPVT--VQYEWIS---LKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTK 305
Query: 306 YRSTINYS----EIYLNYAKKSLIRLYLAIKDI---PKINYKKIIDLNEPHAK------- 351
I++ ++Y +Y K R Y +KD K +K+I +L++P
Sbjct: 306 PEFHISFDLDVIKLYEDYDK--FERFYYGVKDKDEEKKRAFKRIYELSQPMPSERIPYQV 363
Query: 352 --RFIIAMN---DDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEF 406
R + ++ ++ + + IL + ++ K + K+L NW + +Y+ ++F
Sbjct: 364 PFRHLSVISQIFENNDIEKILEILKRVQYTVDDQKDKLINKRLNCARNW--IRKYAPEDF 421
Query: 407 LKNNIYTERKKNVNYSENDIKLKIYFRSEARK-RKNFLEADKIRQEL 452
++ R K N + K A +KNF A +I +
Sbjct: 422 ----KFSLRSKFDNMEILEENSKKAINELAEFLKKNFEVATEIHNLI 464
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 42.7 bits (101), Expect = 3e-04
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 25/148 (16%)
Query: 265 SGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR------------SHYRSTINY 312
G++ + KMSKS GN DLL ++ +++R+++L+ + +N
Sbjct: 318 HGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNA 377
Query: 313 SEI--YLNYAKKSL--IRLY----LAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTP 364
N ++L I+ Y L +DI KK++ L ++ A+ F
Sbjct: 378 DLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAIE-SFEFR 436
Query: 365 VAISILFDLAN----IINKNKSIKMAKQ 388
A+ + LA+ I++NK ++ KQ
Sbjct: 437 KALREIMKLADRGNKYIDENKPWELFKQ 464
Score = 38.1 bits (89), Expect = 0.008
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAA 98
HLGHA I+ D+ R+ R+ Y+V +V + KI A++ + K L ++ +
Sbjct: 15 HLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEF 74
Query: 99 QEDSLLLHIQPPDYQPCAT-NYIPQILKMIEKLIFNGLAYQ 138
++D L+I + + + K+ +KL NG Y+
Sbjct: 75 KDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115
>gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 42.1 bits (100), Expect = 5e-04
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 271 NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSH 305
+K+SKS GN TI D L+ PE +R F+
Sbjct: 277 KGEKISKSKGNVITIEDWLEYAPPESLRLFMFARP 311
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 42.2 bits (100), Expect = 6e-04
Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 20/101 (19%)
Query: 273 KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIK 332
+KMSKS GN +D++ KY +++R ++ S Y + +S+ L ++ ++
Sbjct: 601 RKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTY- 659
Query: 333 DIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDL 373
RF++ DDF+ + +L
Sbjct: 660 -------------------RFLLGNLDDFDPKKDAVLPEEL 681
Score = 31.0 bits (71), Expect = 1.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYV 66
H+GHA I+ DI+ R+ + YDV YV
Sbjct: 65 HIGHALNKILKDIIVRYKTMQGYDVPYV 92
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 41.8 bits (99), Expect = 7e-04
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303
GF+ ++ +KMSKS GN DL+ +Y + +R+F+LR
Sbjct: 291 GFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLR 328
Score = 36.4 bits (85), Expect = 0.033
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDD---KIIACAKKNNESIKTLTSRFI 95
H+GHA + D++ R+ R+ YDV + +T D+ KI A++ S + L R
Sbjct: 17 HIGHAYTTLAADVLARFKRLRGYDVFF---LTGTDEHGQKIQRKAEEAGISPQELADRNS 73
Query: 96 KAAQEDSLLLHIQ 108
A + L+I
Sbjct: 74 AAFKRLWEALNIS 86
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 41.6 bits (98), Expect = 8e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
G + +N++KMSKS GNF T+R +++++ + RF
Sbjct: 710 GHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRF 743
>gnl|CDD|153409 cd07955, Anticodon_Ia_Cys_like, Anticodon-binding domain of
cysteinyl tRNA synthetases and domain found in MshC.
This domain is found in cysteinyl tRNA synthetases
(CysRS), which belong to the class Ia aminoacyl tRNA
synthetases. It lies C-terminal to the catalytic core
domain, and recognizes and specifically binds to the
tRNA anticodon. CysRS catalyzes the transfer of cysteine
to the 3'-end of its tRNA. The family also includes a
domain of MshC, the rate-determining enzyme in the
mycothiol biosynthetic pathway, which is specific to
actinomycetes. The anticodon-binding site of CysRS lies
C-terminal to this model's footprint and is not shared
by MshC.
Length = 81
Score = 36.6 bits (85), Expect = 0.002
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 347 EPHAKRFIIAMNDDFNTPVAISILFDLA 374
E R A+ DD +TP A++ L A
Sbjct: 27 EALVARLREALADDLDTPKALAALDAWA 54
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 39.8 bits (94), Expect = 0.003
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 254 YKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
K F H G+ + + KMSKS GN +L+ +Y + +R+++LR
Sbjct: 284 PKKVFA----H-GWWLMKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLRE 329
Score = 35.2 bits (82), Expect = 0.080
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID---DKIIACAKKNNES 86
H+GHA I D + R+ R+ YDV ++ T D KI A+K ++
Sbjct: 20 HIGHAYTTIAADALARYKRLQGYDVFFL---TGTDEHGQKIQQAAEKAGKT 67
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 39.3 bits (92), Expect = 0.004
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 274 KMSKSFGNFCTIRDLLKKYNPEVIRFFIL-RSHYRSTINYSEIYLNYAKKSLIRLY-LAI 331
KMSKS GN +++++ Y + +R FI+ +++ ++E L A++ L R++ L
Sbjct: 605 KMSKSKGNGIDPQEIVESYGADALRLFIMFMGPIAASLEWNESGLEGARRFLDRVWNLVY 664
Query: 332 KDIPKIN--YKKIIDLNEPHAK------RFIIAMNDD------FNTPVAISILFDLANII 377
+ +++ + L E + +F+ + +D FNT AIS + +L N +
Sbjct: 665 EITGELDAASLTVTALEEAQKELRRDVHKFLKKVTEDLEKRESFNT--AISAMMELLNKL 722
Query: 378 NKNKSIKMAKQ 388
K K + +
Sbjct: 723 YKAKKEALMLE 733
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 39.2 bits (92), Expect = 0.005
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 271 NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR-SHYRSTINYSEIYLNYAKKSLIRLYL 329
+KMSKS GN D++ KY + +RF + + IN+ E + + L +L+
Sbjct: 522 QGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWN 581
Query: 330 AIK----DIPKINYKKIIDLNEPHAKRFIIA 356
A + ++ + + L A R+I++
Sbjct: 582 ATRFVLMNLDDLGPDDLDLLALSLADRWILS 612
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 37.0 bits (85), Expect = 0.020
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSE 314
GF+ + KM KS GN +L++K+ P+ +R+F LR + + +YSE
Sbjct: 358 GFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSE 407
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 37.0 bits (86), Expect = 0.022
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 273 KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYS 313
+KMSKS GN D++ KY + +R ++ S Y IN+S
Sbjct: 566 RKMSKSLGNVIDPLDVIDKYGADALRLWLASSDYGRDINFS 606
Score = 28.9 bits (65), Expect = 7.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYV 66
H+GHA + DIV R+ R+ +DV +V
Sbjct: 39 HIGHALNKTLKDIVIRYKRMQGFDVLWV 66
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 36.7 bits (86), Expect = 0.029
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 273 KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
+KMSKS GN+ ++ KY + +R+++L S
Sbjct: 591 QKMSKSLGNYVDPFEVFDKYGADALRWYLLSS 622
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 35.4 bits (82), Expect = 0.077
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 271 NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYR-STINYSEIYLNYAKKSLIRLYL 329
+KMSKS GN D+++KY + +RF + IN+ + A+ L +L+
Sbjct: 522 QGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWN 581
Query: 330 AIKDIPKINYKKIIDLNEPHAK 351
A + + +N ++L+ K
Sbjct: 582 ASRFV-LMNLSDDLELSGGEEK 602
>gnl|CDD|224611 COG1697, COG1697, DNA topoisomerase VI, subunit A [DNA replication,
recombination, and repair].
Length = 356
Score = 34.6 bits (80), Expect = 0.095
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 379 KNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARK 438
+K + +L + + + T K N+ Y E + + R R
Sbjct: 4 ISKRAEALSKLEHFA-HKIYEQLEKGQIPIVEVPTRTKSNIIYDEESDHIVLGDRKSERS 62
Query: 439 RKNFLEADKIRQELVNNGIILEDMPNGKT 467
A K+ Q L+ I E + GKT
Sbjct: 63 FLTVKGARKLAQTLLMLDFIKELLELGKT 91
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 34.8 bits (81), Expect = 0.12
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 273 KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLY 328
KKMSKS GN T +LL+KY + +R++ + S + E + ++ L +L+
Sbjct: 532 KKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLW 587
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 33.0 bits (76), Expect = 0.28
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 263 MHSGFVK-INNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSH 305
G V+ + +KMSKS GN D++ Y + +RF + +
Sbjct: 331 YLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAA 374
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 33.1 bits (76), Expect = 0.36
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 274 KMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSE 314
KMSKS GN ++ KY +++R ++ S + +S+
Sbjct: 611 KMSKSLGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSD 651
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 32.2 bits (74), Expect = 0.54
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 247 IAQSEGAYKHKFVNYWMHSGFVKINN-KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
+ YK+ V+ GFV + +KMSKS GN+ ++++ KY + +R ++ S
Sbjct: 276 ALFGKAPYKNVIVH-----GFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASS 329
Score = 31.4 bits (72), Expect = 1.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYV 66
H GHA I+ DI+ R+ + Y V
Sbjct: 17 HYGHALNKILKDIINRYKTMQGYYVPRR 44
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 32.4 bits (74), Expect = 0.55
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 117 TNYIPQILKMIEKLIFNGLAY 137
++Y PQ+++M EKLI G AY
Sbjct: 286 SDYFPQLMEMAEKLIKEGKAY 306
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 31.9 bits (73), Expect = 0.68
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 24/104 (23%)
Query: 37 YCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIK 96
Y H+GHAR + +L NY+ ++ D D ++ + +
Sbjct: 13 YLHIGHARTALF-----NYLFAKNYNGKFILRFDDTD------PEREKPE-------YEE 54
Query: 97 AAQEDSLLLHIQP---PDYQPCATNYIPQILKMIEKLIFNGLAY 137
+ ED L I+ P YQ ++ K E+LI GLAY
Sbjct: 55 SILEDLKWLGIKWDEKPYYQ---SDRFDIYYKYAEELIEKGLAY 95
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 31.5 bits (72), Expect = 1.3
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 271 NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSE 314
+KMSKS GN + +D++K+ +++R ++ ++++YS+
Sbjct: 627 KGEKMSKSLGNTVSPQDVIKQSGADILRLWV------ASVDYSD 664
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 30.9 bits (70), Expect = 1.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYV 66
H+GHA I+ D + R+ + V YV
Sbjct: 48 HIGHALNKILKDFINRYQLLQGKKVHYV 75
>gnl|CDD|219966 pfam08679, DsrD, Dissimilatory sulfite reductase D (DsrD). The
structure of the DsrD protein has shown it to contain a
winged-helix motif similar to those found in DNA binding
proteins. The structure suggests a possible role for
DsrD in transcription of translation of genes which
catalyze dissimilatory sulfite reduction.
Length = 65
Score = 28.1 bits (63), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 415 RKKNVNYSENDIKLKIYFRS------EARKRKNFLEADKIRQELVNNGII 458
++K + +++N K K YF+ +A+ R E KI ELVN G +
Sbjct: 3 KQKIIEFAKNGKKTKFYFKDFYKAIPDAKPR----EVKKIVNELVNEGKL 48
>gnl|CDD|224570 COG1656, COG1656, Uncharacterized conserved protein [Function
unknown].
Length = 165
Score = 29.7 bits (67), Expect = 2.1
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 54 RWLRINNYDVTYVRNITDIDDKIIACAKK 82
RWLR+ YD Y N + DD+II AKK
Sbjct: 20 RWLRLLGYDTVYSSNES--DDEIILIAKK 46
>gnl|CDD|226234 COG3711, BglG, Transcriptional antiterminator [Transcription].
Length = 491
Score = 30.1 bits (68), Expect = 2.5
Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 12/157 (7%)
Query: 300 FILRSHYRSTINYSEI----YLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFII 355
+ + S+ L + L+ L + + YK I +E + +R +I
Sbjct: 100 LLSLHELADELFVSKSTIINDLKDVRLKLLLYDLTLVYKRRKGYK--IFGDEWNKRRALI 157
Query: 356 AMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTER 415
+ + + L L +++ K ++ L L + L D+ L N +
Sbjct: 158 NLIANLLSKDYGEFLILLFDLLEKELIKEIKSLL--LQHEKKLQIMFIDKVLNNLVLILA 215
Query: 416 KKNVNYSEN----DIKLKIYFRSEARKRKNFLEADKI 448
E D + + + + E +K
Sbjct: 216 LDQKRRQEVILIGDQGIAFQKKQGDEEEIDIPEIEKS 252
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 30.1 bits (69), Expect = 2.8
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 273 KKMSKSFGNFCTI--RDLLKKYNPEVIRFFILRSHYRSTINYS-EI 315
+KMSKS GN I +D++KKY +++R ++ + Y + S EI
Sbjct: 591 RKMSKSLGN--VIDPQDVIKKYGADILRLWVASTDYSGDVRISDEI 634
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase.
Length = 534
Score = 29.7 bits (67), Expect = 3.5
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 14/67 (20%)
Query: 119 YIPQILKMIEKLIF-----------NGLAYQNNNGKINGDVNYSVRNFLNYGK---LSGR 164
YIP+I +EK++F L + +G +NG V + F Y K S
Sbjct: 345 YIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHP 404
Query: 165 LISSNFN 171
LISS+F+
Sbjct: 405 LISSHFD 411
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 29.7 bits (68), Expect = 3.9
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 274 KMSKSFGNFCTIR--DLLKKYNPEVIRFFILR-SHYRSTINYSEIYLNYAKKSLIRLYLA 330
KMSKS GN + D+++KY + R F + + +S+ + A + L R++
Sbjct: 570 KMSKSKGN--VVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRL 627
Query: 331 IKDIPKINYKKIIDLNEPHAK------RFIIAMNDD-----FNTPVAISILFDLANIINK 379
+ D + + + I + +D FNT AI+ L +L N + K
Sbjct: 628 VVDAKGEAGALDVAALSEDKELRRKLHKTIKKVTEDIERLRFNT--AIAALMELVNALYK 685
Query: 380 NKSIKMAKQLR 390
+ + LR
Sbjct: 686 AEDEQDKAVLR 696
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 29.5 bits (67), Expect = 4.1
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 26/97 (26%)
Query: 317 LNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANI 376
L Y L +LY A+KD + + + A+ D P ++L +++ +
Sbjct: 26 LEYRLWQLKQLYWAVKD---------------NEEAIVEALKKDLGRPPFETLLTEVSGV 70
Query: 377 INKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYT 413
KN + M K L+ +++ DE +K+
Sbjct: 71 --KNDILHMLKNLK---------KWAKDEKVKDGPLA 96
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 29.4 bits (67), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVT 64
H+GH R ++ D + R L YDVT
Sbjct: 127 HVGHLRSAVIGDALARILEFAGYDVT 152
Score = 29.0 bits (66), Expect = 5.6
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 17/55 (30%)
Query: 273 KKMSKSFGNFCTIRDLL------------KKYNPEV-----IRFFILRSHYRSTI 310
KMS GN T+ DLL +K E +R+F L +
Sbjct: 321 VKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDL 375
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate.
There are at least three subgroups of ArgRS. One type
contains both characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. The second
subtype lacks the KMSKS motif; however, it has a lysine
N-terminal to the HIGH motif, which serves as the
functional counterpart to the second lysine of the
KMSKS motif. A third group, which is found primarily
in archaea and a few bacteria, lacks both the KMSKS
motif and the HIGH loop lysine.
Length = 212
Score = 28.7 bits (65), Expect = 4.9
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 13/60 (21%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDD----------KIIACAKKNNESIK 88
H+GH R I+ D + R L YDVT I+D + K ESIK
Sbjct: 16 HVGHLRNAIIGDSLARILEFLGYDVT-REYY--INDWGRQIGLLILSLEKWRKLVEESIK 72
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 29.1 bits (66), Expect = 5.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 5/25 (20%)
Query: 274 KMSKSFGNFCTIRDLLKKYNPEVIR 298
KMSKS+GN +R+ +PE +
Sbjct: 264 KMSKSYGNTIGLRE-----DPESVT 283
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic
core domain. These enzymes attach Gln to the appropriate
tRNA. Like other class I tRNA synthetases, they
aminoacylate the 2'-OH of the nucleotide at the 3' end
of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. GlnRS contains
the characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 238
Score = 28.8 bits (65), Expect = 5.5
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 21/102 (20%)
Query: 37 YCHLGHAR-LMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFI 95
Y H+GHA+ +++ F ++ +R DD N E + ++
Sbjct: 13 YLHIGHAKAILLNFGYAKK-----YGGRCNLR----FDDT-------NPEKEEE---EYV 53
Query: 96 KAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAY 137
+ +ED L I+P A++Y Q+ + E+LI G AY
Sbjct: 54 DSIKEDVKWLGIKP-YKVTYASDYFDQLYEYAEQLIKKGKAY 94
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 28.8 bits (64), Expect = 7.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 258 FVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
F ++H +KMSK+ GN D +K++ + +RF +
Sbjct: 567 FSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTL 610
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 28.5 bits (65), Expect = 8.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 271 NNKKMSKSFGNFCTIR--DLLKKYNPEVIRFFILRS 304
+KMSKS GN I DL+ KY + +RF +
Sbjct: 517 QGRKMSKSKGN--VIDPLDLIDKYGADALRFTLAAL 550
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,666,545
Number of extensions: 2451830
Number of successful extensions: 2479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2407
Number of HSP's successfully gapped: 130
Length of query: 472
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 372
Effective length of database: 6,502,202
Effective search space: 2418819144
Effective search space used: 2418819144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.1 bits)