RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14486
(472 letters)
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 690 bits (1784), Expect = 0.0
Identities = 222/478 (46%), Positives = 295/478 (61%), Gaps = 29/478 (6%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L+I+N+ +R+K+ F PI G+V +YVCGIT YD CH+GH R + FD+V R+LR Y +
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
YVRNITDIDDKII A +N ES + R I +D L+I PD +P AT++I +I
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR----LISSNFNKINEKNNF 179
+++ E+LI G AY +NG DV + V YG LS + L + + +
Sbjct: 122 IELTEQLIAKGHAYVADNG----DVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDD--- 174
Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K++P+DF LWK+SK E W S WGAGRPGWHIECSAM+C LG+HFDIHGGG DL
Sbjct: 175 KRNPMDFVLWKMSK---EGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLM 231
Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
FPHHENEIAQS A+ ++VNYWMHSG V ++ +KMSKS GNF T+RD+LK Y+ E +R+
Sbjct: 232 FPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRY 291
Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
F++ HYRS +NYSE L A+ +L RLY A++ + E RFI AM+D
Sbjct: 292 FLMSGHYRSQLNYSEENLKQARAALERLYTALRG---TDKTVAPAGGEAFEARFIEAMDD 348
Query: 360 DFNTPVAISILFDLANIINKNKS------IKMAKQLRGLGNWLGLLEYSSDEFLKNNIYT 413
DFNTP A S+LFD+A +N+ K+ MA LR L LGLLE + FL++
Sbjct: 349 DFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG--- 405
Query: 414 ERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
+ + +I+ I R +ARK K++ AD R L GI+LED P G T WRR
Sbjct: 406 --AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQG-TTWRR 460
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 687 bits (1776), Expect = 0.0
Identities = 225/480 (46%), Positives = 315/480 (65%), Gaps = 33/480 (6%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
+++I+NS +++K+IF PI GKV LYVCG+T YDY H+GH R I+FD+V R+LR+ Y+
Sbjct: 4 SVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYE 63
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
VT+VRNITDIDDKII A +N ES L RFI+ ED L + PD +P AT Y+P+
Sbjct: 64 VTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPE 123
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR----LISSNFNKINEKNN 178
I+K+I+KL+ N AY NGDV + VR F +YGKLS R L + ++++
Sbjct: 124 IIKLIQKLLDNQYAYTG----QNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDS-- 177
Query: 179 FKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDL 238
K+DPLDF LWK +K P E +W+S WG GRPGWHIECSAMS +LG FDIHGGG DL
Sbjct: 178 -KRDPLDFVLWKKAK---PGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDL 233
Query: 239 KFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIR 298
KFPHHENEIAQSE + FV WMH+G ++IN +KMSKS GN +IR+ LK+ + EV+R
Sbjct: 234 KFPHHENEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLR 293
Query: 299 FFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMN 358
+F+L HYR+ ++YS+ L + +L R YLA++ +P +N++K + RF AM+
Sbjct: 294 YFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPVVNHEKT----SSYTDRFYEAMD 349
Query: 359 DDFNTPVAISILFDLANIINKN-------KSIKMAKQLRGLGNWLGLLEYSSDEFLKNNI 411
DDFNTP+A ++LF++ IN+ K+ +A +L+ LGN GLL+YS ++FL+
Sbjct: 350 DDFNTPIAFALLFEMVREINRFRDNNQIEKAAVLAAELKCLGNIFGLLQYSPEQFLQG-- 407
Query: 412 YTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
+IK I R+EAR +K++ AD+IR +L + G+ +ED +G T WR+
Sbjct: 408 -----AKKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDG-TSWRQ 461
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 643 bits (1662), Expect = 0.0
Identities = 131/495 (26%), Positives = 228/495 (46%), Gaps = 43/495 (8%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
L++YN+ ++ V +Y CG T Y+Y H+G+ R I D++ + LR Y
Sbjct: 23 ILKLYNTRTKDFSELTNF--ENVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYK 80
Query: 63 VTYVRNITDI----------DDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDY 112
V Y NITDI +DK+ A++ ++ ++ F +A D L+I PD
Sbjct: 81 VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDK 140
Query: 113 QPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLIS---SN 169
A+ +IP ++++++ L + Y NG+V + F +YG+++G +
Sbjct: 141 VLVASKHIPIMIEVVKILEEKKITYF-----SNGNVYFDTSCFKSYGEMAGIDLIDKDMT 195
Query: 170 FNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHF 229
++ + + FK++ DF LW + E++W+S WG G P WH+EC+AM+
Sbjct: 196 LPRV-DVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDAL 254
Query: 230 DIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLL 289
DIH GG D HH NEIA +E K+ + ++H F+ ++ KMSKS GNF T++DL
Sbjct: 255 DIHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLE 314
Query: 290 KK-YNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDI------------PK 336
+ ++P R+ L SHYR+ + +S L +K + L + K
Sbjct: 315 DQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNK 374
Query: 337 INYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWL 396
+ + + F+ ++ D N +++L+++ N + K + +
Sbjct: 375 DLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDNLSFVSK-LRLAFIFDEIM 433
Query: 397 GLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNG 456
L L+ I + + + ++K I R A+ KNF AD+IR G
Sbjct: 434 SL-------NLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFFAKKG 486
Query: 457 IILEDMPNGKTEWRR 471
+L D G T+ +R
Sbjct: 487 FVLVDTKEG-TKVKR 500
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 570 bits (1472), Expect = 0.0
Identities = 122/406 (30%), Positives = 189/406 (46%), Gaps = 23/406 (5%)
Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
LR+++S R+ + P ++YVCGIT YD HLGHA + FD+V R +
Sbjct: 20 ALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHT 77
Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
V YV+N+TD+DD + A+++ +TL R + +ED L + PP AT+ I +
Sbjct: 78 VQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAE 137
Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR----LISSNFNKINEKNN 178
+++M+EKL+ +G AY + + DV + +G SG +++ + + +
Sbjct: 138 VVEMVEKLLASGAAYIVEDAE-YPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDR 196
Query: 179 -FKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQD 237
K D LD LW+ + P E W S +G GRPGWH+ECSA++ +G+ DI GGG D
Sbjct: 197 PGKSDQLDALLWRAER---PGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSD 253
Query: 238 LKFPHHENEIAQSEGAYKHK-FVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK-YNPE 295
L FPHHE A +E + F +++H+G + + KMSKS GN + L + +P
Sbjct: 254 LIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPS 313
Query: 296 VIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFII 355
IR + HYR +S L+ A L R A R
Sbjct: 314 AIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPE-------APDATDVIARVRQ 366
Query: 356 AMNDDFNTPVAISILFDLANIINKNKSIKMAKQ---LRGLGNWLGL 398
+ DD +TP A++ L + LG+
Sbjct: 367 YLADDLDTPKALAALDGWCTDALSYGGHDTESPRLVATTVDALLGV 412
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 6e-13
Identities = 70/397 (17%), Positives = 131/397 (32%), Gaps = 101/397 (25%)
Query: 42 HARLMIVFDIVQRWLRINNYDV-------TYVRNITDIDDKIIACAKKNNESIKTLTSRF 94
+ ++V VQ N +++ T + +TD + TLT
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD- 301
Query: 95 IKAAQEDSLL---LHIQPPD--YQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGD-V 148
+ SLL L +P D + TN P+ L +I + I +GLA +N +N D +
Sbjct: 302 ----EVKSLLLKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 149 NYSVRNFLNYGKLSGRLISSNFNK--INEKNNFKKD---PLDF--ALWKVSKNNDPYEIR 201
+ + LN L F++ + F P +W +D +
Sbjct: 356 TTIIESSLNV--LEPAEYRKMFDRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 202 WNSKWGAGRPGWHIECSAMSCYLLGSHFD-----IHGGGQDLKFPHHENEIAQSEGAYKH 256
+ S L+ I +LK ENE A
Sbjct: 409 -------------NKLHKYS--LVEKQPKESTISIPSIYLELK-VKLENEYA-------- 444
Query: 257 KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSE-- 314
+H +++ + K+F + DL+ Y + I H+ I + E
Sbjct: 445 ------LHRSI--VDHYNIPKTFDSD----DLIPPYLDQYFYSHI--GHHLKNIEHPERM 490
Query: 315 -----IYLNYA--KKSLIRLYLAIKDIPKI--------NYKKIIDLNEPHAKRFIIAMND 359
++L++ ++ + A I YK I N+P +R + A+ D
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 360 DFNTPVAISILFDLANII-----NKNKSI--KMAKQL 389
I +++ ++++I + KQ+
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 59.5 bits (143), Expect = 1e-09
Identities = 75/504 (14%), Positives = 152/504 (30%), Gaps = 143/504 (28%)
Query: 50 DIVQRWLR--INNYDVTYV----RNI---TDIDD------------KIIACAKKNNESIK 88
DI+ + ++N+D V ++I +ID ++ E +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM- 78
Query: 89 TLTSRFIKAAQEDS---LLLHIQPPDYQPCA--TNYIPQILKMIEKLIFNGLAYQNNNGK 143
+F++ + L+ I+ QP YI Q ++ N+N
Sbjct: 79 --VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-----------YNDNQV 125
Query: 144 INGDVNYSV---------RNFLN----------YGKL-SGR--LISS--NFNKINEKNNF 179
Y+V R L G L SG+ + K+ K +F
Sbjct: 126 F---AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 180 KKDPLDFALW-KVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDL 238
K W + N P + +E Y + ++
Sbjct: 183 K------IFWLNLKNCNSPETV--------------LEMLQKLLYQIDPNWTS-RSDHSS 221
Query: 239 KFPHHENEIAQSEGAYKHKFVNYWMHSGFVK-------INNKKMSKSFGNFCTIRDLLKK 291
+ I + + + + N K +F C I LL
Sbjct: 222 NIKLRIHSI-------QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LLTT 272
Query: 292 YNPEVIRFFILRSHYRSTINYSEIYLNYAK-KSLIRLYLAIK--DIP----KIN------ 338
+V F + ++++ + L + KSL+ YL + D+P N
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 339 -YKKIIDLNEPHAKRFIIAMNDDFNTPVAISI----------LF-DLANIINKNKSIKMA 386
+ I D + D T + S+ +F L+ + + I
Sbjct: 333 IAESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHI-PT 389
Query: 387 KQLRGLGNWLGLLEYSS----DEFLKNNIYTERKKNVNYSENDI--KLKIYFRSEARKRK 440
L + W +++ ++ K ++ ++ K S I +LK+ +E +
Sbjct: 390 ILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 441 NFLEADKIRQELVNNGIIL--EDM 462
+ ++ I + ++ +I D
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQ 471
Score = 28.3 bits (62), Expect = 7.9
Identities = 22/113 (19%), Positives = 34/113 (30%), Gaps = 44/113 (38%)
Query: 35 YDYCHLGH-------ARLMIVFDIVQ---RWL--RINNYDV----------------TYV 66
Y Y H+GH M +F +V R+L +I + Y
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 67 RNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSL------LLHI--QPPD 111
I D D K + + F+ +E+ + LL I D
Sbjct: 532 PYICDNDP-------KYERLVNAIL-DFLPKIEENLICSKYTDLLRIALMAED 576
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 57.7 bits (139), Expect = 6e-09
Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 22/187 (11%)
Query: 234 GGQDLKFPHHENEIAQSEGAYKHK-FVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKY 292
G+DL H I ++ + + +GF + +KMSKS GN D +++
Sbjct: 609 SGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEEN 668
Query: 293 NPEVIRFFILR-SHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEP--- 348
+V+R +I+ + + S ++ + +K + R Y I + K ++L +
Sbjct: 669 GADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRW 728
Query: 349 -------HAKRFIIAMND-DFNTPVAISILFDLANIINK------NKSIKMAKQL--RGL 392
K A+ + T + + N + + + + +
Sbjct: 729 MLHRLNKAIKETTNALEEFRTRT-AVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLA 787
Query: 393 GNWLGLL 399
W+ L+
Sbjct: 788 DVWVRLM 794
Score = 29.6 bits (66), Expect = 2.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYV 66
H+GHAR + D++ R+ R+ Y+V +
Sbjct: 50 HVGHARTYTIPDVIARFKRMQGYNVLFP 77
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 55.0 bits (132), Expect = 3e-08
Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 15/130 (11%)
Query: 263 MHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS-HYRSTINYSEIYLNYAK 321
+GF + +KMSKS GN D +++ +V+R +I+ + S ++ + +
Sbjct: 639 AVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLR 698
Query: 322 KSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND------------DFNTPVAISI 369
K + R Y I + K ++L + + + +N T
Sbjct: 699 KQIERFYELISQFAEYEVKGNVELKDID-RWMLHRLNKAIKETTNALEEFRTRT-AVQWA 756
Query: 370 LFDLANIINK 379
+ + N +
Sbjct: 757 FYSIMNDLRW 766
Score = 29.2 bits (65), Expect = 4.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTY 65
H+GHAR + D++ R+ R+ Y+V +
Sbjct: 50 HVGHARTYTIPDVIARFKRMQGYNVLF 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 5e-08
Identities = 77/471 (16%), Positives = 138/471 (29%), Gaps = 169/471 (35%)
Query: 49 FDIVQRWLRINNYDV-TYVRNITDIDDKIIACAKKNNESIKT------LTSRFIKAAQED 101
F+ +L N D+ + +D + K E IK + R
Sbjct: 91 FE--NCYLEGN--DIHALAAKLLQENDTTLVKTK---ELIKNYITARIMAKRPFDKKSNS 143
Query: 102 SLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNG-------KINGDVNYSVRN 154
+L + + Q A IF G Q N + Y
Sbjct: 144 ALFRAVGEGNAQLVA--------------IFGG---QGNTDDYFEELRDL-----YQT-- 179
Query: 155 FLNYGKLSGRLISSNFNKINE--KNNFKKDP-----LDFALWKVSKNNDPYEIRWNSKWG 207
Y L G LI + ++E + + L+ W +P
Sbjct: 180 ---YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL----ENP---------- 222
Query: 208 AGRPGWHIECSA-MSCYLLG----SHFDI--HGGGQDLKFPHHENEIAQSEGAYKHKFVN 260
+ P S +SC L+G +H+ + G + +GA
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF-----TPGELRSYLKGA------- 270
Query: 261 YWMHSGFVK-------INNKKMSKSFGNFCTIRDLLKKYNPEVIR--FFI-LRSH----- 305
+G + I + S+ +F ++K I FFI +R +
Sbjct: 271 ----TGHSQGLVTAVAI---AETDSWESF---FVSVRKA----ITVLFFIGVRCYEAYPN 316
Query: 306 --YRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIID-LNE--PHAKRFIIAMNDD 360
+I + N S + L+I ++ + + ++ N P K+ I++
Sbjct: 317 TSLPPSILEDSLENNEGVPSPM---LSISNLTQEQVQDYVNKTNSHLPAGKQVEISL--- 370
Query: 361 FNTPVAISI------LFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNI-YT 413
N + + L+ L + K K+ Q R I ++
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--------------------IPFS 410
Query: 414 ERKKNVNYSENDIKLKIY--FRSEARKRKNFLE--ADKIRQELVNNGIILE 460
ERK + L + F S L +D I ++LV N +
Sbjct: 411 ERKLKFSNR----FLPVASPFHSH------LLVPASDLINKDLVKNNVSFN 451
Score = 51.6 bits (123), Expect = 5e-07
Identities = 66/389 (16%), Positives = 118/389 (30%), Gaps = 132/389 (33%)
Query: 150 YSVRNF-LNYGKLSGR-LISSN--FNKINEKNNFKK---DPLDFALWKVSKNNDP----- 197
YS R L++G L L+ + F + F K +P + + +++P
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTE----GFAADDEPTTPAE 59
Query: 198 -------YEIRWNSKWGAGRPG-------WHIECSAMSCYLLGSHFDIHGGGQDLKFPHH 243
Y G+ E +CYL G+ DIH L +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE----NCYLEGN--DIHALAAKLL-QEN 112
Query: 244 ENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKS----------------F---GN--- 281
+ + ++ K NY K K S S F GN
Sbjct: 113 DTTLVKT----KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 282 -FCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYK 340
F +RDL + Y+ V ++ ++L L D K+ +
Sbjct: 169 YFEELRDLYQTYHVLVGDLI-----------------KFSAETLSELIRTTLDAEKV-FT 210
Query: 341 KIID----LNEPHAKRFIIAMNDDFNTPVAISI----LFDLANIINKNKSI-----KMAK 387
+ ++ L P + D+ + IS + LA+ + K + ++
Sbjct: 211 QGLNILEWLENPSNTP-----DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 388 QLRGL-GNWLGLL-------EYSSDEFLKNNIYTERKKNVNYSENDIKLKIYF----RS- 434
L+G G+ GL+ S + F + + + F R
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA--------------ITVLFFIGVRCY 311
Query: 435 EARKRKNFLEADKIRQELVNNGIILEDMP 463
EA + I ++ + N E +P
Sbjct: 312 EAYPNTSL--PPSILEDSLENN---EGVP 335
Score = 35.0 bits (80), Expect = 0.061
Identities = 48/291 (16%), Positives = 95/291 (32%), Gaps = 93/291 (31%)
Query: 174 NEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIEC--SAMSC--YLLGSH- 228
N +N KD F++ + NN P + + G G I SAM + G
Sbjct: 1647 NRADNHFKDTYGFSILDIVINN-PVNLTIHF---GGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 229 ----F-DIHGGGQDLKFPHHEN-----EIAQ------SEGAY---KHKFV---NYWM--H 264
F +I+ F + + Q + A+ K K + + H
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 265 S-G----FVKINNKKMSKSFGNFCTIRDLLK--KY-----NPEVIRFFILRSHYR-STIN 311
S G S + +I L++ Y V R + RS+Y IN
Sbjct: 1763 SLGEYAALA---------SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 312 YSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFI-IAMNDDFNTP---VAI 367
+ ++++++L + +++ + I N +N
Sbjct: 1814 PGRVAASFSQEAL---------------QYVVERVGKRTGWLVEIV-N--YNVENQQYVA 1855
Query: 368 S----ILFDLANIIN--KNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIY 412
+ L + N++N K + I + + L + S E ++ +++
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDIIE----------LQKSLSLEEVEGHLF 1896
Score = 30.4 bits (68), Expect = 1.9
Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 66/167 (39%)
Query: 20 ITPGKVSLYVCGITAYDYCHLGHARLMIV-------------FDIVQRWLRINNYDVTY- 65
TPG++ Y+ G T GH++ ++ F V++ + + + +
Sbjct: 258 FTPGELRSYLKGAT-------GHSQGLVTAVAIAETDSWESFFVSVRKAITV----LFFI 306
Query: 66 -VR-----NITDIDDKIIACAKKNNESIKT--LTSRFIKAAQEDSLLLHIQPPDYQPCAT 117
VR T + I+ + +NNE + + L+ I ++ + ++ T
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS---ISNLTQEQVQDYVN-------KT 356
Query: 118 N-YIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSG 163
N ++P K + L +NG +N + +SG
Sbjct: 357 NSHLPA-----GKQVEISL--------VNGA-----KNLV----VSG 381
Score = 28.5 bits (63), Expect = 7.4
Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 17/93 (18%)
Query: 49 FDIVQR-WLRINNYDV-TYVRNITDIDDKIIACAKKNNESIKTLTSRFI-----KAAQED 101
Q W R +N+ TY +I DI NN LT F + +
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIV--------INNP--VNLTIHFGGEKGKRIRENY 1688
Query: 102 SLLLHIQPPDYQPCATNYIPQILKMIEKLIFNG 134
S ++ D + +I + F
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 47.8 bits (114), Expect = 6e-06
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 265 SGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303
+ ++ + KK S S + + L + + +R+++
Sbjct: 335 NEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTT 373
Score = 28.5 bits (64), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 38 CHLGH-ARLMIVFDIVQRWLRINNYDVTYV 66
H GH A + DI R+LR+ DV ++
Sbjct: 17 IHAGHLAGAYLPADIFVRYLRLKGEDVVFI 46
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 46.1 bits (110), Expect = 2e-05
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 253 AYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
+ + G+V +N KMSKS G F L ++ + +R++
Sbjct: 324 GSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYT 373
Score = 30.3 bits (69), Expect = 1.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 38 CHLGHARLMIVFDIVQRWLRINNYDVTYV 66
HLGH I D+ R+ R+ ++V ++
Sbjct: 33 IHLGHMLEHIQADVWVRYQRMRGHEVNFI 61
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 45.7 bits (109), Expect = 3e-05
Identities = 25/139 (17%), Positives = 56/139 (40%), Gaps = 36/139 (25%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYL----NYAK 321
G+ + KKMSK+ GN +++++Y + +R+F+LR E+ +++K
Sbjct: 287 GWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLR----------EVPFGQDGDFSK 336
Query: 322 KSLIRLY-----------------LAIK----DIPKINYKKIIDLNEPHAKRFIIAMNDD 360
K+++ +A K ++ ++ + + K + M +
Sbjct: 337 KAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKNYENYM-EK 395
Query: 361 FNTPVAISILFDLANIINK 379
N AI + + +NK
Sbjct: 396 VNFYKAIEEILKFTSYLNK 414
Score = 35.3 bits (82), Expect = 0.046
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID---DKIIACAKKNNESIKTLTSRFI 95
HLGHA I D + R+ R+ +YDV + +T D KI A++ S K L R
Sbjct: 21 HLGHAYTTIAADTIARYYRLRDYDVFF---LTGTDEHGLKIQKKAEELGISPKELVDRNA 77
Query: 96 KAAQEDSLLLHIQPPDY 112
+ ++ L I+ +
Sbjct: 78 ERFKKLWEFLKIEYTKF 94
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 43.8 bits (104), Expect = 9e-05
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303
GF+ +KMSKS GN +L+++Y + +R+F++R
Sbjct: 313 GFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMR 350
Score = 35.3 bits (82), Expect = 0.038
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID---DKIIACAKKNNESIKTLTSRFI 95
H+GHA +I D + R+ R+N DV + +T D K++ A+K + + L R
Sbjct: 41 HIGHAYELIATDAMARFQRLNGMDVYF---LTGTDEHGIKMLQSARKEGITPRDLADRNT 97
Query: 96 KAAQEDSLLLHIQPPDY 112
A + + +L+ DY
Sbjct: 98 SAFRRMAEVLNSSNDDY 114
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 43.4 bits (103), Expect = 1e-04
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303
G++ +KMSKS GN +L+ + + +R+F+LR
Sbjct: 302 GWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLR 339
Score = 35.3 bits (82), Expect = 0.047
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID---DKIIACAKKNNESIKTLTSRFI 95
H+GHA I D + R+ R++ YDV Y +T D K+ A K L R
Sbjct: 28 HIGHAYEYIATDAIARFKRLDGYDVRY---LTGTDVHGQKMAETAAKEGIPAAELARRNS 84
Query: 96 KAAQEDSLLLHIQPPDY 112
Q L+I +
Sbjct: 85 DVFQRLQEKLNISFDRF 101
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 42.7 bits (101), Expect = 2e-04
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303
G+ ++KK+SKS GN + K++ + +++F++R
Sbjct: 331 GWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMR 368
Score = 34.6 bits (80), Expect = 0.082
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID---DKIIACAKKNNESIKTLTSRFI 95
H+GH ++ D++ R+ R+ +V +T D K+ A K S T+
Sbjct: 42 HIGHVYSTLIVDVLGRYHRVKGEEVFV---MTGTDEHGQKVAEAAAKQGVSPMDFTTSVS 98
Query: 96 KAAQEDSLLLHIQPPDY 112
++ ++ +
Sbjct: 99 SEFKQCFQEMNYDMNYF 115
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 41.8 bits (99), Expect = 4e-04
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 40/151 (26%)
Query: 254 YKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYS 313
Y+H V + + +KMSK+ GN LL+KY + +R+++LR
Sbjct: 281 YRHLNV----GGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLR---------- 326
Query: 314 EIYL----NYAKKSLIRLY-----------------LAIK----DIPKINYKKIIDLNEP 348
EI ++++L Y + + IP+ + +
Sbjct: 327 EIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGTG 386
Query: 349 HAKRFIIAMNDDFNTPVAISILFDLANIINK 379
A R + + VA+ +N+
Sbjct: 387 LAGRLRPLV-RELKFHVALEEAMAYVKALNR 416
Score = 34.5 bits (80), Expect = 0.070
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID---DKIIACAKKNNESIKTLTSRFI 95
HLGHA +V D + RW R++ Y + +T D + + A+ E K R
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFF---LTGTDEHGETVYRAAQAAGEDPKAFVDRVS 75
Query: 96 KAAQEDSLLLHIQPPDY 112
+ LL I D+
Sbjct: 76 GRFKRAWDLLGIAYDDF 92
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 39.6 bits (92), Expect = 0.002
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID---DKIIACAKKNNESIKTLTSRFI 95
H+GH ++ D++ R+ R+ V +T D K+ AK+ S T+
Sbjct: 25 HIGHVYSTLITDVIGRYHRVKGERVFA---LTGTDEHGQKVAEAAKQKQVSPYDFTTAVA 81
Query: 96 KAAQEDSLLLHIQPPDY-QPCATNYIPQILKMIEKLIFNGLAYQNN 140
++ + + + + + ++ KL G Y
Sbjct: 82 GEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGR 127
Score = 36.1 bits (83), Expect = 0.022
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRS 304
G+ + KK+SKS GN + +++ + +++F+LR
Sbjct: 315 GWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRE 353
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 37.9 bits (89), Expect = 0.007
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 273 KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSH-YRSTINYSE 314
+KMSKS GN D+++K+ + +R++I S + +
Sbjct: 590 QKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGP 632
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 37.6 bits (88), Expect = 0.007
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 274 KMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTIN 311
KMSK GNF + D++ + + +R+ L + +
Sbjct: 285 KMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLE 322
Score = 29.9 bits (68), Expect = 2.3
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVT---YV 66
H+GHAR + D + R R Y YV
Sbjct: 46 HIGHARGAVFGDTLTRLARHLGYKFNTEYYV 76
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 37.2 bits (85), Expect = 0.011
Identities = 62/435 (14%), Positives = 130/435 (29%), Gaps = 45/435 (10%)
Query: 30 CGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKT 89
GIT Y H+G+ R + IV LR Y+V ++ D D +K ++
Sbjct: 26 SGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRF-----RKVPRNVPQ 80
Query: 90 LTSRFIKAAQEDSLLLHIQPP--DYQPCATNYIPQILKMIEKL----IFNGLAYQNNNGK 143
++ + + P ++ A +++ + + +EKL + G+
Sbjct: 81 EWKDYL-----GMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGE 135
Query: 144 INGDVNYSVRNFLNYGKLSG---RLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEI 200
+ ++ + ++ + N P ++ + + +++
Sbjct: 136 YSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKV 195
Query: 201 RWNSKWGA----------GRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQS 250
++ G + W ++ + G F+ G +D H +
Sbjct: 196 KYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHF-GVDFEPAG--KD----HLVAGSSYD 248
Query: 251 EGAYKHKFVNYWMHSGFVKI-------NNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR 303
G K V + KMS S GN + DL + P ++RF R
Sbjct: 249 TGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYAR 308
Query: 304 SHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNT 363
I ++ L + K + + + +
Sbjct: 309 HRPNKEIKI-DLGLGILNLYDEFEKVERIYFGVEGGKGDDEELRRTYELSMPKKPERLVA 367
Query: 364 PVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSE 423
L L + + + + L G+ L E +K I R Y+
Sbjct: 368 QAPFRFLAVLVQLPHLTEE-DIINVLIKQGHIPRDLSKEDVERVKLRINLARNWVKKYAP 426
Query: 424 NDIKLKIYFRSEARK 438
D+K I + +
Sbjct: 427 EDVKFSILEKPPEVE 441
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.075
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 12/35 (34%)
Query: 85 ESIKTLTSRFIKAAQEDSLLLHIQPPDYQPC-ATN 118
+++K L + SL L+ D P A
Sbjct: 20 QALKKL---------QASLKLY--ADDSAPALAIK 43
Score = 29.1 bits (64), Expect = 1.9
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 10/23 (43%)
Query: 273 KKMSKSFGNFCTIRDLLKKYNPE 295
KK+ S LK Y +
Sbjct: 23 KKLQAS----------LKLYADD 35
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 31.4 bits (72), Expect = 0.77
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 273 KKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSE 314
KKMSKS GN ++K+ ++ R ++ + Y + + S+
Sbjct: 594 KKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISD 635
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein
binding; 2.29A {Homo sapiens}
Length = 1253
Score = 31.3 bits (70), Expect = 0.90
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 40 LGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKN---NESIKTLTSRFIK 96
LG R V D L++ +D K++ +K N+ I T+ +++K
Sbjct: 1168 LGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLK 1227
Query: 97 AAQEDSLLLH----IQPPDYQPCATN 118
+ + + QPP +Q A++
Sbjct: 1228 SGDGEGTPVEHVRCFQPPIHQSLASS 1253
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 29.6 bits (67), Expect = 2.6
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 29/106 (27%)
Query: 37 YCHLGHARLMIV-FDIVQRWLRINNYD-VTYVRNITDIDD---KIIACAKKNNESIKTLT 91
H+GHAR I+ + ++ YD +R I+D + + + E
Sbjct: 108 PLHIGHARAAILNHEYARK------YDGRLILR----IEDTDPR-----RVDPE------ 146
Query: 92 SRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAY 137
D L ++ D ++ + + EKLI G AY
Sbjct: 147 --AYDMIPADLEWLGVEW-DETVIQSDRMETYYEYTEKLIERGGAY 189
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 29.5 bits (67), Expect = 2.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 58 INNYDVTYVRNITDIDDKIIACAKK 82
I NYD+ VR+ T + +I KK
Sbjct: 44 IGNYDIIVVRSRTKVTKDVIEKGKK 68
>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus
subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A
Length = 421
Score = 29.3 bits (66), Expect = 2.6
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 87 IKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLA 136
K L + H PP+YQ +++ Q+L ++ ++ LA
Sbjct: 166 AKKLHESQPVDLVSTFMGAHAIPPEYQNDPDDFLDQMLSLLPEIKEQELA 215
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine
methyltransferase, structural genomics, PSI, protein
structure initiative; HET: SAH; 1.25A {Mus musculus}
PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Length = 252
Score = 29.0 bits (64), Expect = 3.1
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 174 NEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIE 216
+ ++ D + +V KN W KW +H E
Sbjct: 8 HHHHHMSLDMKEHPDAEVQKNQVLTLEDWKEKWVTRHISFHQE 50
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S
metabolism, 2-hydroxyacid dehydrogenases; HET: NAD;
1.70A {Homo sapiens}
Length = 335
Score = 29.1 bits (66), Expect = 3.3
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 58 INNYDVTYVRNITDIDDKIIACAKK 82
+ + + VR+ T + +I A+K
Sbjct: 65 LQDCEGLIVRSATKVTADVINAAEK 89
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 28.7 bits (65), Expect = 4.3
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 57 RINNYDVTYVRNITDIDDKIIACAKK 82
+ + + VR+ + ++I A K
Sbjct: 41 LVKDVEAIIVRSKPKVTRRVIESAPK 66
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 28.7 bits (65), Expect = 4.9
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 273 KKMSKSFGNFCTI--RDLLKKYNPEVIRFFILRS 304
+KMSKS GN I +++++Y + +RF ++
Sbjct: 527 QKMSKSKGN--VIDPLEMVERYGADALRFALIYL 558
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 28.3 bits (64), Expect = 7.5
Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 21/145 (14%)
Query: 274 KMSKSFGNFCTIRDLLKKYNPEVIRFFIL-RSHYRSTINYSEIYLNYAKKSLIRLYLAIK 332
MSKS GN + +K+ ++ R IL + + + ++E + A + L R+Y +
Sbjct: 637 VMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVA 696
Query: 333 DIPKINYKKIIDLNEPHAK-----------RFIIAMNDD-----FNTPVAISILFDLANI 376
+ + + + + + +D FNT AI+ L + N
Sbjct: 697 EDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNT--AIAALMEFLNA 754
Query: 377 INKNKSIKMAKQLR--GLGNWLGLL 399
+ + + + + + +L +L
Sbjct: 755 LYEYRKDRPVTPVYRTAIRYYLQML 779
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 27.9 bits (63), Expect = 7.7
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 446 DKIRQELVNNGIILEDM 462
+K+++EL+ ++ ED
Sbjct: 122 EKVKKELLAYDVVCEDY 138
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 27.9 bits (63), Expect = 9.2
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 274 KMSKSFGNFCTI--RDLLKKYNPEVIRFFIL-RSHYRSTINYSEIYLNYAKKSLIRLYLA 330
KMSKS N I + ++++Y + +R F++ S T+ + E + A + L R++
Sbjct: 639 KMSKSKNN--GIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKL 696
Query: 331 IKDIPKINYKKIIDLNEPHAK---------RFIIAMNDD------FNTPVAISILFDLAN 375
+ + ++++ + I + DD FNT AI+ + +L N
Sbjct: 697 VYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNT--AIAAIMELMN 754
Query: 376 IINK 379
+ K
Sbjct: 755 KLAK 758
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1
d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Length = 529
Score = 27.7 bits (62), Expect = 9.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 57 RINNYDVTYVRNITDIDDKIIACAKK 82
+ D VR+ T +D +++A A K
Sbjct: 41 AVPEADALLVRSATTVDAEVLAAAPK 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,542,366
Number of extensions: 461760
Number of successful extensions: 1141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1101
Number of HSP's successfully gapped: 89
Length of query: 472
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 375
Effective length of database: 3,993,456
Effective search space: 1497546000
Effective search space used: 1497546000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)