RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14486
(472 letters)
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 258 bits (660), Expect = 1e-83
Identities = 162/321 (50%), Positives = 216/321 (67%), Gaps = 8/321 (2%)
Query: 4 LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
L+I+N+ +R+K+ F PI G+V +YVCGIT YD CH+GH R + FD+V R+LR Y +
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 64 TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
YVRNITDIDDKII A +N ES + R I +D L+I PD +P AT++I +I
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNF-NKINEKNNFKKD 182
+++ E+LI G AY + NGDV + V YG LS + + + + K++
Sbjct: 122 IELTEQLIAKGHAYVAD----NGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRN 177
Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
P+DF LWK+SK +P W S WGAGRPGWHIECSAM+C LG+HFDIHGGG DL FPH
Sbjct: 178 PMDFVLWKMSKEGEP---SWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPH 234
Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
HENEIAQS A+ ++VNYWMHSG V ++ +KMSKS GNF T+RD+LK Y+ E +R+F++
Sbjct: 235 HENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLM 294
Query: 303 RSHYRSTINYSEIYLNYAKKS 323
HYRS +NYSE L A+ +
Sbjct: 295 SGHYRSQLNYSEENLKQARAA 315
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 143 bits (360), Expect = 1e-39
Identities = 49/318 (15%), Positives = 88/318 (27%), Gaps = 31/318 (9%)
Query: 14 KQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDID 73
+I + + GIT Y H+G+ R + IV LR Y+V ++ D D
Sbjct: 8 DKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYD 67
Query: 74 -----------------DKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCA 116
I+ ++ F++ +E+ L I+
Sbjct: 68 RFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASE 127
Query: 117 TNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEK 176
+ + I K Y + + +
Sbjct: 128 LYKRGEYSEEIRLAFEKRDKIMEILNK------YREIAKQPPLPENWWPAMVYCPEHRRE 181
Query: 177 NNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQ 236
+ D K + +E + + G + W ++ D G+
Sbjct: 182 AEIIEW--DGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDW---PMRWSHFGVDFEPAGK 236
Query: 237 DLKFPHHENEIAQSEGAY-KHKFVNYWMHSGFVKINNK--KMSKSFGNFCTIRDLLKKYN 293
D + + K + FV I + KMS S GN + DL +
Sbjct: 237 DHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLE 296
Query: 294 PEVIRFFILRSHYRSTIN 311
P ++RF R I
Sbjct: 297 PGLVRFIYARHRPNKEIK 314
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 130 bits (328), Expect = 1e-34
Identities = 47/320 (14%), Positives = 97/320 (30%), Gaps = 45/320 (14%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAA 98
HLGH I D+ R+ R+ ++V ++ I+ A++ + + + +
Sbjct: 18 HLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEH 77
Query: 99 QEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVN----YSVRN 154
Q D +I +Y + Q+ ++I + +N D R
Sbjct: 78 QTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRF 137
Query: 155 FLNYGKLSGRLISSNFNKIN----------EKNNFKKDPLDFALWKVSKNNDPYEIRWNS 204
++ R F + ++ + ++I ++
Sbjct: 138 VVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDA 197
Query: 205 KWGAGRPGWHIECSAMSCYLLGSHF----------------------------DIHGGGQ 236
+ + H G+
Sbjct: 198 PYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 257
Query: 237 DLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEV 296
D+ + H A EG+ K N ++H G+V +N KMSKS G F L ++ +
Sbjct: 258 DIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNHFDADS 316
Query: 297 IRFFILR--SHYRSTINYSE 314
+R++ S I+ +
Sbjct: 317 LRYYYTAKLSSRIDDIDLNL 336
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 127 bits (319), Expect = 2e-33
Identities = 47/342 (13%), Positives = 87/342 (25%), Gaps = 63/342 (18%)
Query: 33 TAYDYCHLGHARLM-IVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLT 91
A H GH + DI R+LR+ DV ++ + I A K S + +
Sbjct: 12 YANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIV 71
Query: 92 SRFIKAAQEDSLLLHIQPPDYQPCATNYI------------------------------- 120
F + + I +
Sbjct: 72 DEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDK 131
Query: 121 ------------PQILKMIEKLIFNG------LAYQNNNGKINGDVNYSVRNFLNYGKLS 162
P + L +V V +++ G L
Sbjct: 132 MFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEG-LE 190
Query: 163 GRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSC 222
R I+ + N ++D L+ + Y + R G E
Sbjct: 191 ERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYI--SITIEHFKRIGKPNEWKKYWL 248
Query: 223 YLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKH---------KFVNYWMHSGFVKINNK 273
+ G IH G+D H A K+ + ++ + K
Sbjct: 249 NIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGK 308
Query: 274 KMSKSFGNFCTIRDLLKKYNPEVIRFFILR-SHYRSTINYSE 314
K S S + + L + + +R+++ ++S
Sbjct: 309 KFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSF 350
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 127 bits (318), Expect = 2e-33
Identities = 46/320 (14%), Positives = 94/320 (29%), Gaps = 44/320 (13%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAA 98
HLGHA +V D + RW R++ Y ++ + + + A+ E K R
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRF 78
Query: 99 QEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNY 158
+ LL I D+ ++++++ K ++ + V+
Sbjct: 79 KRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE 138
Query: 159 GKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNND---------------------- 196
I + ++ N+ + W +
Sbjct: 139 LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPI 198
Query: 197 ----PYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEG 252
+ WG P + + L ++ + + G
Sbjct: 199 GDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIG 258
Query: 253 AYKHK-----------------FVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPE 295
K + + + + + +KMSK+ GN LL+KY +
Sbjct: 259 KDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRD 318
Query: 296 VIRFFILRS-HYRSTINYSE 314
+R+++LR Y SE
Sbjct: 319 ALRYYLLREIPYGQDTPVSE 338
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 87
Score = 80.7 bits (199), Expect = 2e-19
Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 324 LIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS- 382
L RLY A++ K E RFI AM+DDFNTP A S+LFD+A +N+ K+
Sbjct: 1 LERLYTALRGTDKT---VAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE 57
Query: 383 -----IKMAKQLRGLGNWLGLLEYSSDEFL 407
MA LR L LGLLE + FL
Sbjct: 58 DMAAANAMASHLRKLSAVLGLLEQEPEAFL 87
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 70.8 bits (172), Expect = 9e-14
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 1/135 (0%)
Query: 181 KDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKF 240
KD L N + + G + L D++ G D
Sbjct: 307 KDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYR 366
Query: 241 PHHENEIAQSEGAYKHK-FVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
+ I S + H + KKMSKS GN ++K+ ++ R
Sbjct: 367 GWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARL 426
Query: 300 FILRSHYRSTINYSE 314
++ + Y + + S+
Sbjct: 427 WVSSTDYLADVRISD 441
Score = 45.3 bits (106), Expect = 1e-05
Identities = 22/196 (11%), Positives = 50/196 (25%), Gaps = 6/196 (3%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAA 98
H+GHA I+ D + R+ + + YV I K K +++ +
Sbjct: 64 HMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREK 123
Query: 99 QEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNF--L 156
++ L I+ L A Q D + +
Sbjct: 124 CKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPV 183
Query: 157 NYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIE 216
+ S ++ + KK +++ + + + +
Sbjct: 184 YWSPSSESSLAEAEIEYPHDWRTKKPV----IFRATPQWFASISKVRQDILDAIENTNFK 239
Query: 217 CSAMSCYLLGSHFDIH 232
+ + D
Sbjct: 240 VNWGKTRIYNMVRDRG 255
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 62.6 bits (151), Expect = 3e-11
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 5/113 (4%)
Query: 204 SKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGA-YKHKFVNYW 262
+ W GW E + + D+ G D+ F + F
Sbjct: 307 ALWPLSTLGWPEETEDLKAF---YPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVL 363
Query: 263 MHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR-SHYRSTINYSE 314
+H + +KMSKS GN +++++Y + +RF ++ + I
Sbjct: 364 LHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDL 416
Score = 51.9 bits (123), Expect = 1e-07
Identities = 35/337 (10%), Positives = 77/337 (22%), Gaps = 30/337 (8%)
Query: 13 KKQIFYPITPGKVSLYVCG--ITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNIT 70
K GK + H+GHA + D + R+ R+ ++ ++
Sbjct: 22 KNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD 81
Query: 71 DIDDKIIACAKKNNES----------------IKTLTSRFIKAAQEDSLLLHIQP---PD 111
++ + + L +
Sbjct: 82 HAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSRE 141
Query: 112 YQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFN 171
+ + GLAY+ +N + R +
Sbjct: 142 AFTMDEKRSRAVRYAFSRYYHEGLAYRAPR-LVNWCPRCETTLSDLEVETCSRCGTPIEY 200
Query: 172 KINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWG-----AGRPGWHIECSAMSCYLLG 226
I + + PL + K + D + K W+I + +
Sbjct: 201 AIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIP 260
Query: 227 SHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIR 286
+ + ++ P E S A + ++ S +
Sbjct: 261 AWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEET 320
Query: 287 DLLKKYNPEVIRF---FILRSHYRSTINYSEIYLNYA 320
+ LK + P + IL ++
Sbjct: 321 EDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGER 357
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 58.8 bits (141), Expect = 5e-10
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 2/115 (1%)
Query: 202 WNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHK-FVN 260
W H + D G D + + F N
Sbjct: 329 WYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKN 388
Query: 261 YWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILR-SHYRSTINYSE 314
H + +KMSKS GN D+++K+ + +R++I + + +
Sbjct: 389 VICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGP 443
Score = 48.8 bits (115), Expect = 9e-07
Identities = 30/220 (13%), Positives = 58/220 (26%), Gaps = 27/220 (12%)
Query: 24 KVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYV----------------- 66
+ ++Y TA H+GHA+ D+ R+ + Y
Sbjct: 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKK 98
Query: 67 ---RNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
++ +I+ I + + +A E Y YI I
Sbjct: 99 LGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESI 158
Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR-------LISSNFNKINEK 176
++ L GL Y+++ + + L+ K
Sbjct: 159 WWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIK 218
Query: 177 NNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIE 216
N KD L ++ + +W W +
Sbjct: 219 NTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALS 258
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 50.9 bits (121), Expect = 1e-07
Identities = 36/288 (12%), Positives = 70/288 (24%), Gaps = 49/288 (17%)
Query: 37 YCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIK 96
H+G A + +F+ + ++ I D D +
Sbjct: 13 DPHVGTAY-IALFN----YAWARRNGGRFIVRIEDTD-------------RARYVPGAEE 54
Query: 97 AAQEDSLLLHIQP--------PDYQPCATNYIPQILKMIEKLIFNGLAY----------- 137
L + P + +P K E+L+ G AY
Sbjct: 55 RILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQ 114
Query: 138 -QNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNND 196
+ G +G G KD L V +N
Sbjct: 115 IRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL---RGVVVYDNQ 171
Query: 197 PYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKH 256
K G P +H+ + + H A +
Sbjct: 172 EIPDVVLLKSD-GYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRA-----FGW 225
Query: 257 KFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKK-YNPEVIRFFILR 303
+ ++ + K+SK + ++ + + PE +R ++
Sbjct: 226 EAPRFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCL 272
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 45.3 bits (106), Expect = 8e-06
Identities = 23/268 (8%), Positives = 57/268 (21%), Gaps = 17/268 (6%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITD----IDDKIIACAK-KNNESIKTLTSR 93
H GH R I+ + ++V + + D + + N E++
Sbjct: 24 HAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIH 83
Query: 94 FIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVR 153
+ + D P + + + +++ +
Sbjct: 84 HLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYI 143
Query: 154 NFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSK-------W 206
+ + + S E D
Sbjct: 144 DTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIV 203
Query: 207 GAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYK---HKFVNYWM 263
+ + + + AQ K ++
Sbjct: 204 QKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQ 263
Query: 264 HSGFVKINNKKMSKSFGNFCTIRDLLKK 291
H F + MS G + ++L++
Sbjct: 264 HVNFGMVQG--MSTRKGTVVFLDNILEE 289
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 39.5 bits (91), Expect = 5e-04
Identities = 32/293 (10%), Positives = 75/293 (25%), Gaps = 44/293 (15%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVT---------------------YVRNITDIDDKII 77
H+GH R + + D + R L +V Y +
Sbjct: 23 HVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 82
Query: 78 ACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKM----IEKLIFN 133
+ + ++ A E+ L + + + Q+ M +
Sbjct: 83 FAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLV 142
Query: 134 GLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWK--- 190
+ G + + ++ + G+ + + +DP L
Sbjct: 143 WESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGT 202
Query: 191 -----------VSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
K +R+ PG Y + D++
Sbjct: 203 ATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTP--KAEETINVVDVR 260
Query: 240 FPHHENEIAQSE---GAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLL 289
H + + + G + + V + ++MS G ++ ++L
Sbjct: 261 QSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVL 313
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 37.7 bits (86), Expect = 0.002
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 39 HLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDD---KIIACAKKNNESIKTLTSRFI 95
H+GH + + D++ R+ R+ Y+V + D A K K T I
Sbjct: 49 HMGHLKNYTMGDVLARFRRMQGYEVLHP---MGWDAFGLPAENAALKFGVHPKDWTYANI 105
Query: 96 KAAQEDSLLLHIQPPDYQPCAT---NYIPQILKMIEKLIFNGLAYQNN 140
+ A+E L+ I + T Y + K+ GLAY+
Sbjct: 106 RQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAK 153
Score = 35.3 bits (80), Expect = 0.014
Identities = 12/91 (13%), Positives = 27/91 (29%)
Query: 212 GWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKIN 271
G + + + ++ E+ ++ + +
Sbjct: 383 GMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWK 442
Query: 272 NKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
MSKS GN + +K+ ++ R IL
Sbjct: 443 PAVMSKSKGNGVMVGPFVKEQGADIARITIL 473
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 34.8 bits (79), Expect = 0.014
Identities = 27/259 (10%), Positives = 54/259 (20%), Gaps = 31/259 (11%)
Query: 37 YCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIK 96
H G + +L+ ++ I DID +
Sbjct: 14 ELHFGSLIAALG-----SYLQARARQGRWLVRIEDID-------------PPREVPGAAE 55
Query: 97 AAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFL 156
+ + + + L GL+Y S+
Sbjct: 56 TILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCT---CTRARIQSIGGIY 112
Query: 157 NYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIE 216
+ N + + D + + + G +++
Sbjct: 113 DGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLA 172
Query: 217 CSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMS 276
+ G DL P +K +Y + K+S
Sbjct: 173 VVVDDHF---QGVTEIVRGADLIEPTVRQISLYQLFGWKVP--DYIHLPLALNPQGAKLS 227
Query: 277 KSFGNFCTIRDLLKKYNPE 295
K L K +P
Sbjct: 228 KQ-----NHAPALPKGDPR 241
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes
faecalis [TaxId: 511]}
Length = 133
Score = 28.1 bits (62), Expect = 1.2
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 209 GRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHEN 245
+ SC + FD GQ + +
Sbjct: 65 CPTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATAD 101
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 27.5 bits (59), Expect = 3.2
Identities = 5/109 (4%), Positives = 25/109 (22%), Gaps = 4/109 (3%)
Query: 164 RLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCY 223
L+ S + + +K+ + PL ++ + +
Sbjct: 18 ELLHSKPSLLLQKDQDGRIPLHWS----VSFQAHEITSFLLSKMENVNLDDYPDDSGWTP 73
Query: 224 LLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINN 272
+ + + ++ + + +++
Sbjct: 74 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 27.1 bits (59), Expect = 5.5
Identities = 36/293 (12%), Positives = 77/293 (26%), Gaps = 44/293 (15%)
Query: 37 YCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIK 96
Y H+GHA+ I + + +Y D + +++
Sbjct: 31 YLHIGHAK-SICLN----FGIAQDYKGQCNLRFDDTNPVKEDIE-------------YVE 72
Query: 97 AAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGK-----INGDVNYS 151
+ + D L +++Y Q+ +LI GLAY + G +
Sbjct: 73 SIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQP 132
Query: 152 VRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKN---NDPYEIRWNSKWGA 208
+N + ++ K L + S DP R
Sbjct: 133 GKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHH 192
Query: 209 GRPGWHIECSAMSCYLLGSHFD----IHGGGQDLK---FPHHENEIAQSEGAYKHKFVNY 261
S + + + + + ++
Sbjct: 193 QTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFS 252
Query: 262 WMHSGFVKINNKKMSKSFGN----------FCTIRDLLKK-YNPEVIRFFILR 303
++ + ++ +K++ + TI L ++ Y IR F R
Sbjct: 253 RLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKR 305
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 25.7 bits (56), Expect = 7.0
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 266 GFVKINNKKMSKSFGNFCTIRDLLKKYNPEVI-------RFFILRSHYRSTINYSEIYLN 318
G+ KINN S + LL + P+ + + + +E L
Sbjct: 26 GWQKINN--FSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQ 83
Query: 319 YAKKSLIRLYLAIKDIPKINYKKII 343
A K R ++ D+ N K +
Sbjct: 84 QADKLGCRQFVTPADVVSGNPKLNL 108
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 26.4 bits (56), Expect = 7.1
Identities = 11/109 (10%), Positives = 27/109 (24%)
Query: 164 RLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCY 223
R + + +N +NN ++ PL A+ + +
Sbjct: 23 RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ 82
Query: 224 LLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINN 272
+ + H + G + + G V++
Sbjct: 83 GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 131
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 213
Score = 26.2 bits (57), Expect = 7.1
Identities = 13/120 (10%), Positives = 34/120 (28%)
Query: 173 INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIH 232
+ K L L ++K+ + S S +L+ +
Sbjct: 77 RDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVI 136
Query: 233 GGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKY 292
D + E+ S + +++ K + I++++K++
Sbjct: 137 SKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRH 196
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0420 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,907,919
Number of extensions: 94806
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 43
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)