BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14488
(368 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P04995|EX1_ECOLI Exodeoxyribonuclease I OS=Escherichia coli (strain K12) GN=sbcB
PE=1 SV=2
Length = 475
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 201/373 (53%), Gaps = 20/373 (5%)
Query: 1 MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60
+F+RN +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N
Sbjct: 115 IFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG 174
Query: 61 LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120
+ H AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++
Sbjct: 175 IEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSG 234
Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED- 179
MF + S + P+ HP N+N +I +L D L D + +R+ L K ++
Sbjct: 235 MFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA 294
Query: 180 -IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD 238
+P+ ++H+N+ P V++ L R + N+K + N + +K+
Sbjct: 295 AVPVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAI 350
Query: 239 YK----INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELI 294
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+
Sbjct: 351 FAEAEPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLL 407
Query: 295 FLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI- 353
F YRARNF TL Y E +RW ++R F + + + E++ L+++ + K+
Sbjct: 408 FNYRARNFPGTLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVA 462
Query: 354 -LNALLMYGKSIT 365
L AL Y + I
Sbjct: 463 LLKALWQYAEEIV 475
>sp|P45188|EX1_HAEIN Exodeoxyribonuclease I OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=sbcB PE=3 SV=1
Length = 473
Score = 211 bits (536), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 177/321 (55%), Gaps = 7/321 (2%)
Query: 2 FWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNL 61
F+RN I PYE WKN SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N++
Sbjct: 112 FYRNFIEPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANSI 171
Query: 62 SHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHM 121
H+ AHDA++DV AT+ +A+LI+ P+LF + R KK + + P +++ M
Sbjct: 172 EHENAHDAMADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGM 231
Query: 122 FSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--- 178
+ + + P+ HP N+N LI +L D L +++R L KK +E
Sbjct: 232 LGNYRGNCTWVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGV 291
Query: 179 -DIPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFL 237
+P+ ++H+N+ PI ++ K L R D N+ + + IF
Sbjct: 292 SSVPLKLVHINKCPI-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFN 350
Query: 238 DYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLY 297
+ + S+ N++ ELYN F S D +AILRS+ +KLS FE+K++ EL+F Y
Sbjct: 351 EERQFASN--DNVETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHY 408
Query: 298 RARNFIETLSYKELKRWKKYR 318
RAR+F +TL+ E +WKKYR
Sbjct: 409 RARHFYKTLTRAEQIKWKKYR 429
>sp|P57620|EX1_BUCAI Exodeoxyribonuclease I OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=sbcB PE=3 SV=1
Length = 413
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 171/307 (55%), Gaps = 16/307 (5%)
Query: 1 MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60
+F+RN +PYE WKN SRWD++N+++A Y L P GI WP G SFKL L+ NN
Sbjct: 115 IFYRNFFDPYEWSWKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNN 174
Query: 61 LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120
+ H AH+A+SDV AT+ +A+L++ PRLF+F +RKK + I +P YI+
Sbjct: 175 IVHLNAHNAVSDVYATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISA 234
Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-- 178
F + + +S + PI H N NILI +L D K L+N KI CF K
Sbjct: 235 YFGAIYHNMSCILPIAWHENNSNILIAIDLFKDIKT-LINMCKKI----CFDSIFIKNLL 289
Query: 179 DIPISMIHLNRSPIV--ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF 236
D + ++HLNR PI+ I ++ N + ++F LN + IK + N K IF
Sbjct: 290 DSGVVLLHLNRCPILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNI---KIIF 346
Query: 237 LDYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFC-FENKKLEELIF 295
K NN++ N+D E+YN F + KD K+ I+R+ P L ++ FC F + +L+ L F
Sbjct: 347 --SKNNNTNQFFNVDLEIYNGFFNSKDKKKIQIIRNTDPVFLKHI-FCNFHDSRLKNLFF 403
Query: 296 LYRARNF 302
YRARNF
Sbjct: 404 RYRARNF 410
>sp|Q8K923|EX1_BUCAP Exodeoxyribonuclease I OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=sbcB PE=3 SV=1
Length = 482
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 184/349 (52%), Gaps = 21/349 (6%)
Query: 1 MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60
+F+RN ++PYE WKNN SRWDL+NV++A Y L P GI WP G P FKL L+ NN
Sbjct: 116 IFYRNFLDPYEWSWKNNNSRWDLLNVVRACYALRPSGIQWPKNEFGLPVFKLSDLTQKNN 175
Query: 61 LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120
+SH AHDA SDV AT+ LA+LI+ P+LF+F RKK + I P Y++
Sbjct: 176 ISHYNAHDATSDVYATIELAKLIKRKQPKLFDFFFKYRKKNELCRLIDIEKFTPIIYVSS 235
Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-- 178
F + +S + P+ NKNILI+ +L D K ++ + S K+
Sbjct: 236 YFGALRQNMSCILPLSWDLHNKNILISIDLFKDIDKLIV-----FCKTVSISNISIKDLF 290
Query: 179 DIPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD 238
D+ I +++LNR PI ++ +KV+ R F +K I + K + L
Sbjct: 291 DLGIVLVYLNRCPI-LAPIKVIRKEDTNRLNFKKYFYYKKINLVKKNYFLIDLVKNVLL- 348
Query: 239 YKINNSDLELNIDEELYNNFISKKD-NL--KLAILRSMSPKKLSNVNFCFENKKLEELIF 295
K N + LN+D ++Y++F + D NL K+++ +S KK+ F++ +L+EL F
Sbjct: 349 -KKNENKNSLNVDLQIYDSFFNFHDKNLIKKISLTKSSDLKKMK---LDFKDPRLKELFF 404
Query: 296 LYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK 344
Y+ARNF L E K W Y + K N + + + +IESLLK
Sbjct: 405 RYKARNFFNILKNDEKKEWINYCL-----KTLNSFFLTGYIDKIESLLK 448
>sp|Q89A43|EX1_BUCBP Exodeoxyribonuclease I OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=sbcB PE=3 SV=1
Length = 481
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 167/324 (51%), Gaps = 25/324 (7%)
Query: 1 MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60
+F+RN +N YE WKN SRWD++++++A YVL P GI WP + S +L +S NN
Sbjct: 115 IFYRNFLNSYEWSWKNGNSRWDMLDLLRACYVLRPEGINWPRNEDNSVSLRLSDISLANN 174
Query: 61 LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120
+ H AH+A SDV AT+ +A+LI+ P+LFNF R KK +L I P YI+
Sbjct: 175 IVHNVAHNASSDVYATMNIAKLIKQKKPKLFNFFFKYRTKKAILTLIDVNSLNPIVYISR 234
Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNS----- 175
F + YIS + PI HP+N NIL++ +L D +K +LN FK+NS
Sbjct: 235 FFGVVNRYISYIVPILWHPINSNILVSIDLSQDVQK-ILN---------FFKRNSILNVN 284
Query: 176 FKED--IPISMIHLNRSPIVI-SNLKVLSSNLMFR--YKFDLNCAFKNIKCASSILNNTY 230
+KE + I I++NR PI+I +N+ + + R YK N K
Sbjct: 285 YKEIFLMGIRFIYVNRCPILIPTNVIRMKDRIRLRINYKLFQNNLVLLRKNIFLKKKLKK 344
Query: 231 IWKKIFLDYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKL 290
I K N S N+D ++YN+F S DN + + S PK++ +NF + ++
Sbjct: 345 FLCSIAEAPKYNGS----NVDLKMYNSFFSYIDNNVIKNIHSTLPKRIK-INFMKYDNRI 399
Query: 291 EELIFLYRARNFIETLSYKELKRW 314
+L L+ AR + L Y E W
Sbjct: 400 NQLFILFLARYRPDMLDYSEKYFW 423
>sp|O04058|PALY_HELAN Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2
Length = 667
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 233 KKIFLDYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKL 290
+++ +D+ +NN + E N + ++ + +D LK AIL PK++ +V FEN +
Sbjct: 589 RQVLVDHALNNGETEKNANTSIFQKIATFEDELK-AIL----PKEVESVRVAFENGTM 641
>sp|Q4G059|CDA7L_RAT Cell division cycle-associated 7-like protein OS=Rattus norvegicus
GN=Cdca7l PE=2 SV=1
Length = 438
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 275 PKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISRFYNKKN 327
P+K + NF F KL E ++ +R R +T+S + ++++++RIS F + K+
Sbjct: 266 PEKFALENFTFSATKLTEELYSFRRR---KTISGGKCQKYRRHRISSFRSVKD 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,605,836
Number of Sequences: 539616
Number of extensions: 5752352
Number of successful extensions: 17534
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 17408
Number of HSP's gapped (non-prelim): 238
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)