Query psy14488
Match_columns 368
No_of_seqs 115 out of 298
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 21:05:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qxf_A Exodeoxyribonuclease I; 100.0 1.2E-94 4.2E-99 741.6 29.7 355 2-365 116-475 (482)
2 3u3y_B Three prime repair exon 97.3 9E-05 3.1E-09 72.2 3.5 61 20-86 152-214 (314)
3 3mxm_B Three prime repair exon 97.1 0.00019 6.3E-09 66.8 3.1 61 19-85 151-213 (242)
4 1w0h_A 3'-5' exonuclease ERI1; 96.9 0.00062 2.1E-08 60.5 4.3 41 46-86 153-194 (204)
5 1y97_A Three prime repair exon 96.8 0.0014 4.8E-08 59.8 6.1 40 46-85 168-208 (238)
6 2gui_A DNA polymerase III epsi 96.8 0.00062 2.1E-08 60.3 3.3 44 49-92 145-190 (194)
7 2p1j_A POLIII, DNA polymerase 96.6 0.0014 4.9E-08 57.9 4.0 41 46-86 135-175 (186)
8 2xri_A ERI1 exoribonuclease 3; 96.3 0.0023 7.7E-08 58.4 3.9 39 47-85 173-212 (224)
9 2f96_A Ribonuclease T; RNAse, 96.3 0.0017 5.8E-08 59.0 3.0 39 49-87 173-213 (224)
10 2gbz_A Oligoribonuclease; ORN, 95.5 0.013 4.5E-07 52.1 4.8 28 59-86 153-180 (194)
11 1wlj_A Interferon stimulated g 95.3 0.0076 2.6E-07 53.4 2.6 39 47-85 125-167 (189)
12 3v9w_A Ribonuclease T; DEDD nu 95.0 0.016 5.3E-07 52.8 4.0 37 50-86 182-220 (235)
13 1zbu_A ERI-1 homolog, 3'-5' ex 95.0 0.021 7.2E-07 56.0 5.1 38 49-86 274-312 (349)
14 2igi_A Oligoribonuclease; RNAs 94.9 0.019 6.3E-07 50.0 3.9 28 59-86 149-176 (180)
15 1zbh_A 3'-5' exonuclease ERI1; 94.5 0.019 6.7E-07 54.6 3.2 38 49-86 224-262 (299)
16 3cg7_A CRN-4, cell death-relat 93.7 0.049 1.7E-06 52.3 4.4 37 49-85 170-207 (308)
17 3tr8_A Oligoribonuclease; tran 89.5 0.19 6.4E-06 44.9 3.0 28 59-86 153-180 (186)
18 3fp5_A Acyl-COA binding protei 40.3 70 0.0024 26.0 6.5 54 303-359 51-105 (106)
19 3iyk_A VP5; icosahedral virus; 37.0 53 0.0018 33.7 6.3 112 111-236 359-491 (526)
20 4hec_A Putative uncharacterize 32.0 20 0.0007 32.0 2.1 26 62-87 157-182 (190)
21 2ciw_A Chloroperoxidase; oxido 25.8 26 0.00089 33.7 1.8 47 16-64 45-107 (299)
22 1d0q_A DNA primase; zinc-bindi 25.5 12 0.00042 29.8 -0.5 53 19-74 15-71 (103)
23 4dhx_B Enhancer of yellow 2 tr 23.8 1.4E+02 0.0047 24.0 5.5 53 311-363 43-97 (101)
24 3mhs_B Protein SUS1; multi-pro 23.1 1.3E+02 0.0046 23.8 5.3 54 311-366 39-94 (96)
25 3omd_A Uncharacterized protein 20.1 1.1E+02 0.0039 26.2 4.5 59 259-321 47-105 (145)
No 1
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=100.00 E-value=1.2e-94 Score=741.63 Aligned_cols=355 Identities=32% Similarity=0.616 Sum_probs=313.9
Q ss_pred ccccCcccccccccCCCcccHHHHHHHHHHhhcCCCcccCCCCCCCcceecccchhhhCcccccchhhhhhHHHHHHHHH
Q psy14488 2 FWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLAR 81 (368)
Q Consensus 2 fYRNf~dPY~~ew~nGnSRwDli~vvra~yalrPegi~WP~~~dG~pSFKLe~Lt~ANgi~h~~AHDAlsDV~ATI~lAk 81 (368)
|+|++++||.++|+|||++||.++++|.+|.++|+|+.||.+++|.+|+||+.|+.++||.+++||+||+||+||++|++
T Consensus 116 ~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~Gi~~~~aHrAL~DA~aTa~l~~ 195 (482)
T 2qxf_A 116 FYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAK 195 (482)
T ss_dssp HHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCCC---CTTHHHHHHHHHHH
T ss_pred HHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCcchHHHHHhccCHHHHHhhhCCCCCCceEEEecccCCCCCCceEEEeecccCCCCCeEEEEeCCCCchHhhcCC
Q psy14488 82 LIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLND 161 (368)
Q Consensus 82 LIk~kqPkL~~~~~~~r~K~~v~~~l~~~~~~P~lhvs~~f~a~~~~~~~v~pl~~hp~n~N~vi~~DL~~Dp~~L~~l~ 161 (368)
.+++++|++|+|++++|+|..+..++++..++|++|||++||+.+||+++|+|||+||+|+|+||||||+.||++|+++|
T Consensus 196 ~l~~~~p~l~~~~l~~~~k~~~~~l~~~~~~~P~~~~s~~fg~~~g~~~~v~pl~~~~~n~n~~~~~dl~~d~~~l~~~~ 275 (482)
T 2qxf_A 196 LVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELD 275 (482)
T ss_dssp HHHHHSHHHHHHHHHTTSHHHHHHTCCTTTTCCEEEECGGGCGGGTTEEEEEEEEECSSCTTEEEEEETTSCCHHHHHCC
T ss_pred HHHHhChhhhHHHHHhhhHHHHHHHHhhccCCcceEeecccccccCeeeEEeeeeeCCCCcccEEEEECCCChHHHhcCC
Confidence 99999999999999999999999999987899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccCCCC--CCceEEeecCCcccccccccCChhhhhhhcCCHHHHHHHHHhHHHHhhChhHHHHHHHHh
Q psy14488 162 INKIRDYLCFKKNSFKED--IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY 239 (368)
Q Consensus 162 ~~~i~~~l~t~~~~l~e~--~plk~i~iNk~P~v~~p~~~l~~~~a~rl~id~~~~~~~~~~~~~l~~~~~l~~kl~~~~ 239 (368)
+++|++||||++++||+. +|||+||||||||| +|+++|++++++|||||.++|++|+++ |+++|++++|++++|
T Consensus 276 ~~~l~~~l~~~~~~l~~~~~~p~k~v~~nk~P~~-~~~~~l~~~~~~r~~id~~~~~~~~~~---~~~~~~~~~~~~~~~ 351 (482)
T 2qxf_A 276 SDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVL-AQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIF 351 (482)
T ss_dssp -------------------CCCEEEEETTSCCEE-EEGGGSCHHHHHHHTCCHHHHHHHHHH---HHHCTTHHHHC----
T ss_pred HHHHHHHhccchhhhccccCCCeEEEEecCCCee-cccccCCHHHHHHhCCCHHHHHHHHHH---HHhCHHHHHHHHHHH
Confidence 999999999999999876 89999999999998 999999999999999999999999999 999999999999999
Q ss_pred hhc-CCCCCCCccHHhhccCCChHHHHHHHHHHcCChhhhhccCCCCCCccHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q psy14488 240 KIN-NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYR 318 (368)
Q Consensus 240 ~~~-~~~~~~d~d~~LY~GF~s~~Dk~~m~~i~~~~p~~l~~~~~~F~D~Rl~eLlfRyraRN~P~~L~~~E~~~W~~~~ 318 (368)
++. .++++.|||++||+||||++||++|++||.++|++|+++...|+|+||++|+|||||||||+|||++|+++|++||
T Consensus 352 ~~~~~~~~~~d~d~~lY~gF~~~~D~~~~~~~~~~~~~~~~~~~~~f~d~rl~~l~~r~~arn~p~~l~~~e~~~w~~~~ 431 (482)
T 2qxf_A 352 AEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHR 431 (482)
T ss_dssp ---------CCGGGCGGGCCCCHHHHHHHHHHHHSCTTTSTTCCCCCCSTHHHHHHHHHHHHHCGGGCCHHHHHHHHHHH
T ss_pred hccccCCCCCChHHHHhCCCCCHHHHHHHHHHHcCCHHHHHhCcCCCcCccHHHHHHHHHHhcCcccCCHHHHHHHHHHH
Confidence 863 3677799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCCCccccHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHHHhh
Q psy14488 319 ISRFYNKKNNLYNINMFYLEIESLLKKANEH--DTKILNALLMYGKSIT 365 (368)
Q Consensus 319 ~~rl~~~~~~~~~~~~~~~~l~~L~~~~~~~--~~~iL~~L~~y~~~l~ 365 (368)
++||+. .|+++|+++|++|+++++.+ |++||++|++|+++|.
T Consensus 432 ~~~l~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~y~~~~~ 475 (482)
T 2qxf_A 432 RQVFTP-----EFLQGYADELQMLVQQYADDKEKVALLKALWQYADEIV 475 (482)
T ss_dssp HHHSCH-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHC-
T ss_pred HHHhhh-----hhHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 999985 28999999999999998766 8899999999999885
No 2
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=97.35 E-value=9e-05 Score=72.22 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=44.3
Q ss_pred ccHHHHHHH-HHHhhcCCCcccCCCCCCCcceecccchhh-hCcccccchhhhhhHHHHHHHHHHHHhh
Q psy14488 20 RWDLINVIK-AFYVLSPYGITWPYKNNGKPSFKLEHLSFV-NNLSHKKAHDALSDVRATLGLARLIRNN 86 (368)
Q Consensus 20 RwDli~vvr-a~yalrPegi~WP~~~dG~pSFKLe~Lt~A-Ngi~h~~AHDAlsDV~ATI~lAkLIk~k 86 (368)
-.|.+.++| +...+ ||....+..++||+.|+.. -||.+.++|+|++||+||.++.+.+.++
T Consensus 152 ~iDTL~l~r~L~r~~------~P~~~~~~~~~~L~~L~~~l~gi~~~~aHrAl~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 152 CVDSIAALKALEQAS------SPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp EEEHHHHHHHHHTTC-------------CCCCSHHHHHHHHHSSCCSCSSSHHHHHHHHHHHHHSSHHH
T ss_pred EEeHHHHHHHHHHHh------CccccccCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 347777777 33333 6654456789999999999 9999999999999999999988866553
No 3
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=97.14 E-value=0.00019 Score=66.83 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=44.4
Q ss_pred cccHHHHHHHHHH-hhcCCCcccCCCCCCCcceecccchhh-hCcccccchhhhhhHHHHHHHHHHHHh
Q psy14488 19 SRWDLINVIKAFY-VLSPYGITWPYKNNGKPSFKLEHLSFV-NNLSHKKAHDALSDVRATLGLARLIRN 85 (368)
Q Consensus 19 SRwDli~vvra~y-alrPegi~WP~~~dG~pSFKLe~Lt~A-Ngi~h~~AHDAlsDV~ATI~lAkLIk~ 85 (368)
.-.|.+.++|.++ .. ||....+.++++|+.|+.. -||.+.++|+|++||.||.++.+.+.+
T Consensus 151 ~~iDtl~l~r~l~~~~------~p~~~~~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~ata~l~~~~~~ 213 (242)
T 3mxm_B 151 FCVDSIAALKALEQAS------SPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDDLTLLSICQWKPQ 213 (242)
T ss_dssp EEEEHHHHHHHHHHHH------CC------CCCSHHHHHHHHHSSCCSSTTSHHHHHHHHHHHHTSSHH
T ss_pred eEeehHHHHHHHHhhc------CccccCCCCCcCHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHHHH
Confidence 3358888888543 33 5544456789999999977 999999999999999999888765544
No 4
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=96.92 E-value=0.00062 Score=60.52 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=35.7
Q ss_pred CCcceecccchhhhCcccc-cchhhhhhHHHHHHHHHHHHhh
Q psy14488 46 GKPSFKLEHLSFVNNLSHK-KAHDALSDVRATLGLARLIRNN 86 (368)
Q Consensus 46 G~pSFKLe~Lt~ANgi~h~-~AHDAlsDV~ATI~lAkLIk~k 86 (368)
+.++.+|+.|+...||... ++|+|++|+.||..+.+.+.++
T Consensus 153 ~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~ 194 (204)
T 1w0h_A 153 PRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQD 194 (204)
T ss_dssp CGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCccchHHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHHHC
Confidence 3567899999999999987 6999999999999998777654
No 5
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=96.83 E-value=0.0014 Score=59.78 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=31.1
Q ss_pred CCcceecccchh-hhCcccccchhhhhhHHHHHHHHHHHHh
Q psy14488 46 GKPSFKLEHLSF-VNNLSHKKAHDALSDVRATLGLARLIRN 85 (368)
Q Consensus 46 G~pSFKLe~Lt~-ANgi~h~~AHDAlsDV~ATI~lAkLIk~ 85 (368)
+.++++|+.|+. .-||.+.++|+|++||.||..+.+.+.+
T Consensus 168 ~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~~ta~l~~~l~~ 208 (238)
T 1y97_A 168 GRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAA 208 (238)
T ss_dssp ---CCSHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHH
Confidence 457899999999 5999999999999999999999888764
No 6
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=96.81 E-value=0.00062 Score=60.27 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=33.8
Q ss_pred ceecccchhhhCcccc--cchhhhhhHHHHHHHHHHHHhhCcchHH
Q psy14488 49 SFKLEHLSFVNNLSHK--KAHDALSDVRATLGLARLIRNNNPRLFN 92 (368)
Q Consensus 49 SFKLe~Lt~ANgi~h~--~AHDAlsDV~ATI~lAkLIk~kqPkL~~ 92 (368)
+.+|+.|+..-||... .+|+|++|+.+|..+.+.+.++.+.+|.
T Consensus 145 ~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~~ 190 (194)
T 2gui_A 145 RNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMAT 190 (194)
T ss_dssp CCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC-------
T ss_pred CCCHHHHHHHcCcCCCCCCCCChHHHHHHHHHHHHHHHhccchhhh
Confidence 4699999999999876 5999999999999999998888887764
No 7
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=96.57 E-value=0.0014 Score=57.85 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=36.2
Q ss_pred CCcceecccchhhhCcccccchhhhhhHHHHHHHHHHHHhh
Q psy14488 46 GKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNN 86 (368)
Q Consensus 46 G~pSFKLe~Lt~ANgi~h~~AHDAlsDV~ATI~lAkLIk~k 86 (368)
+.++.+|+.|+..-||...++|+|++|+.+|..|.+.+.++
T Consensus 135 ~~~~~~L~~l~~~~gi~~~~~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 135 KLRSYSLDSVVEKLGLGPFRHHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp CCSCCSHHHHHHHTTCCSTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred hcCCCCHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999989999999999999988777553
No 8
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=96.34 E-value=0.0023 Score=58.40 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=34.4
Q ss_pred CcceecccchhhhCccc-ccchhhhhhHHHHHHHHHHHHh
Q psy14488 47 KPSFKLEHLSFVNNLSH-KKAHDALSDVRATLGLARLIRN 85 (368)
Q Consensus 47 ~pSFKLe~Lt~ANgi~h-~~AHDAlsDV~ATI~lAkLIk~ 85 (368)
.|+.+|+.|+..-||.. +++|+|++|+.||..|.+.+.+
T Consensus 173 ~p~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 173 WPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp CCTTTHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHH
Confidence 46689999999999998 5799999999999999887765
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=96.34 E-value=0.0017 Score=58.97 Aligned_cols=39 Identities=23% Similarity=0.135 Sum_probs=33.7
Q ss_pred ceecccchhhhCcc--cccchhhhhhHHHHHHHHHHHHhhC
Q psy14488 49 SFKLEHLSFVNNLS--HKKAHDALSDVRATLGLARLIRNNN 87 (368)
Q Consensus 49 SFKLe~Lt~ANgi~--h~~AHDAlsDV~ATI~lAkLIk~kq 87 (368)
+.+|+.|+..-||. +..+|+|++|+.||..|.+.+.++.
T Consensus 173 ~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~ 213 (224)
T 2f96_A 173 QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRW 213 (224)
T ss_dssp CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 36899999999998 4589999999999999988777653
No 10
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=95.46 E-value=0.013 Score=52.08 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=25.3
Q ss_pred hCcccccchhhhhhHHHHHHHHHHHHhh
Q psy14488 59 NNLSHKKAHDALSDVRATLGLARLIRNN 86 (368)
Q Consensus 59 Ngi~h~~AHDAlsDV~ATI~lAkLIk~k 86 (368)
++|.+.++|+||+|+.||+++.+.++++
T Consensus 153 ~~i~~~~~H~Al~Da~ata~ll~~~~~~ 180 (194)
T 2gbz_A 153 SGFAKSSAHTALSDVRDSIDELRHYRQF 180 (194)
T ss_dssp TTCCCCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred hCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999999999875
No 11
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=95.27 E-value=0.0076 Score=53.35 Aligned_cols=39 Identities=26% Similarity=0.258 Sum_probs=32.5
Q ss_pred Ccceecccchhh-hCccccc---chhhhhhHHHHHHHHHHHHh
Q psy14488 47 KPSFKLEHLSFV-NNLSHKK---AHDALSDVRATLGLARLIRN 85 (368)
Q Consensus 47 ~pSFKLe~Lt~A-Ngi~h~~---AHDAlsDV~ATI~lAkLIk~ 85 (368)
.++.+|+.|+.. =|+...+ +|+|++|++||..|.+.+.+
T Consensus 125 ~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~l~~ 167 (189)
T 1wlj_A 125 CRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQR 167 (189)
T ss_dssp ---CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 468999999999 5998776 99999999999999888765
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=95.02 E-value=0.016 Score=52.84 Aligned_cols=37 Identities=27% Similarity=0.189 Sum_probs=32.2
Q ss_pred eecccchhhhCccc--ccchhhhhhHHHHHHHHHHHHhh
Q psy14488 50 FKLEHLSFVNNLSH--KKAHDALSDVRATLGLARLIRNN 86 (368)
Q Consensus 50 FKLe~Lt~ANgi~h--~~AHDAlsDV~ATI~lAkLIk~k 86 (368)
.+|+.|+..-||.. ..+|+|++|+.+|..|...+.++
T Consensus 182 ~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~ 220 (235)
T 3v9w_A 182 TVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNR 220 (235)
T ss_dssp CSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHH
Confidence 58999999999975 47999999999999988877653
No 13
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=95.02 E-value=0.021 Score=56.04 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=32.8
Q ss_pred ceecccchhhhCcccc-cchhhhhhHHHHHHHHHHHHhh
Q psy14488 49 SFKLEHLSFVNNLSHK-KAHDALSDVRATLGLARLIRNN 86 (368)
Q Consensus 49 SFKLe~Lt~ANgi~h~-~AHDAlsDV~ATI~lAkLIk~k 86 (368)
+.+|+.|+..-||.+. .+|+|+.|+.||..|.+.+.++
T Consensus 274 ~~~L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~ 312 (349)
T 1zbu_A 274 QTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQD 312 (349)
T ss_dssp GGSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3999999999999987 5999999999999887765543
No 14
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=94.90 E-value=0.019 Score=50.02 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=25.4
Q ss_pred hCcccccchhhhhhHHHHHHHHHHHHhh
Q psy14488 59 NNLSHKKAHDALSDVRATLGLARLIRNN 86 (368)
Q Consensus 59 Ngi~h~~AHDAlsDV~ATI~lAkLIk~k 86 (368)
+||.+.++|+||+|++||+++.+.++++
T Consensus 149 ~~i~~~~~H~Al~Da~ata~l~~~~~~~ 176 (180)
T 2igi_A 149 DGFTKQGTHQAMDDIRESVAELAYYREH 176 (180)
T ss_dssp GGSCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCcCCcCcHHHHHHHHHHHHHHHHH
Confidence 5898899999999999999999988774
No 15
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=94.45 E-value=0.019 Score=54.65 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=33.2
Q ss_pred ceecccchhhhCcccc-cchhhhhhHHHHHHHHHHHHhh
Q psy14488 49 SFKLEHLSFVNNLSHK-KAHDALSDVRATLGLARLIRNN 86 (368)
Q Consensus 49 SFKLe~Lt~ANgi~h~-~AHDAlsDV~ATI~lAkLIk~k 86 (368)
+.+|+.|+..-||.+. .+|+|++|+.||..|.+.+.++
T Consensus 224 ~~~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~ 262 (299)
T 1zbh_A 224 QTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQD 262 (299)
T ss_dssp GCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 3999999999999987 5999999999999988766553
No 16
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=93.71 E-value=0.049 Score=52.28 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=31.6
Q ss_pred ceecccchhhhCccccc-chhhhhhHHHHHHHHHHHHh
Q psy14488 49 SFKLEHLSFVNNLSHKK-AHDALSDVRATLGLARLIRN 85 (368)
Q Consensus 49 SFKLe~Lt~ANgi~h~~-AHDAlsDV~ATI~lAkLIk~ 85 (368)
+.+|++|+..-||...+ +|+|++|+.||..|.+.+.+
T Consensus 170 ~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~ 207 (308)
T 3cg7_A 170 TTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMIN 207 (308)
T ss_dssp CSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 68999999999999865 59999999999988766543
No 17
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=89.49 E-value=0.19 Score=44.95 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=25.5
Q ss_pred hCcccccchhhhhhHHHHHHHHHHHHhh
Q psy14488 59 NNLSHKKAHDALSDVRATLGLARLIRNN 86 (368)
Q Consensus 59 Ngi~h~~AHDAlsDV~ATI~lAkLIk~k 86 (368)
+||.+.++|.||+|+.|||++.|--++.
T Consensus 153 ~~~~~~~~HrAl~Da~ati~~l~~y~~~ 180 (186)
T 3tr8_A 153 AAHIKESQHLALQDIRDSIEELRYYRAH 180 (186)
T ss_dssp TTSCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCcChHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999988774
No 18
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=40.28 E-value=70 Score=25.98 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHHHcccCCCccccHHHHHHHHHHHHhhcccc-HHHHHHHHHH
Q psy14488 303 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH-DTKILNALLM 359 (368)
Q Consensus 303 P~~L~~~E~~~W~~~~~~rl~~~~~~~~~~~~~~~~l~~L~~~~~~~-~~~iL~~L~~ 359 (368)
|..++...+.+|..+.+ +.+ -...--+..|.+.+++|..+++.. -..+|.+|+.
T Consensus 51 Pg~~d~~~raKw~AW~~--l~g-mS~eeA~~~YI~~v~~l~~~~~~~~~~~~~~~le~ 105 (106)
T 3fp5_A 51 PGLMDFTGKAKWDAWKS--VEG-TSKEVAYQKYVEKLLEILKKADTEESKKYIAEIEA 105 (106)
T ss_dssp CCTTCHHHHHHHHHHHT--TTT-CCHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHH--ccC-CCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 67788889999998855 321 001113689999999999885444 5568888763
No 19
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=37.03 E-value=53 Score=33.75 Aligned_cols=112 Identities=14% Similarity=0.118 Sum_probs=66.1
Q ss_pred CCCceEEEe-cccCCCCCCceEEEeecccCCCCCeEEEEeCCCCchHhhcCCHH----------------HHHHHhcccc
Q psy14488 111 IARPFFYIT-HMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDIN----------------KIRDYLCFKK 173 (368)
Q Consensus 111 ~~~P~lhvs-~~f~a~~~~~~~v~pl~~hp~n~N~vi~~DL~~Dp~~L~~l~~~----------------~i~~~l~t~~ 173 (368)
..+|.+||= .=+.+. +..++-+|+.|-.|..=++||||..|---+-+++.. +-....|.-.
T Consensus 359 ~q~P~IHiYtaPwDSD--~V~ifh~isPhH~~~sF~lgfDL~id~vhfeD~~~~~H~lg~a~~~~grtf~~Ay~eFf~~a 436 (526)
T 3iyk_A 359 AQQPQIHVYSAPWDSD--DVFFFHCISHHHANESFFLGFDLSIDLVHYEDLTAHWHALGAAQTAAGRTLTEAYREFLNLA 436 (526)
T ss_pred ccCCceEEecCCCCCC--cEEEEEeecCccCCceeEEEEecccceEEEEeccccccccCccccccCcCHHHHHHHHHHHH
Confidence 568999874 244444 677788899999999999999999986555554432 1112222111
Q ss_pred ccCCCCCCceEEeecC----CcccccccccCChhhhhhhcCCHHHHHHHHHhHHHHhhChhHHHHHH
Q psy14488 174 NSFKEDIPISMIHLNR----SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF 236 (368)
Q Consensus 174 ~~l~e~~plk~i~iNk----~P~v~~p~~~l~~~~a~rl~id~~~~~~~~~~~~~l~~~~~l~~kl~ 236 (368)
...|....+-.=++-+ .||- +- ..-+.+.+++.+.|+.. |-.+++|+..+.
T Consensus 437 ~~~~~st~iH~~Rl~RS~~~hPIY-lG--------S~~Y~~SY~ql~~NA~~---~v~~~elQ~HiL 491 (526)
T 3iyk_A 437 ISNAFGTQMHTRRLVRSKTVHPIY-LG--------SLHYDISFSDLRGNAQR---IVYDDELQMHIL 491 (526)
T ss_pred hcCCCCcHHHHHHHHhcccCCCee-ec--------cccchhhHHHHHHHHHH---HhCCHHHHHHHH
Confidence 1111110010001111 3443 21 11246788999999999 999999887664
No 20
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=32.02 E-value=20 Score=32.04 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=17.3
Q ss_pred ccccchhhhhhHHHHHHHHHHHHhhC
Q psy14488 62 SHKKAHDALSDVRATLGLARLIRNNN 87 (368)
Q Consensus 62 ~h~~AHDAlsDV~ATI~lAkLIk~kq 87 (368)
.++.+|+||.|.++..+.-+.|...+
T Consensus 157 ~~~~~H~AL~DAR~n~~~~~~~~~~~ 182 (190)
T 4hec_A 157 RPRDVHDALVDARDQLRRFRLITSTD 182 (190)
T ss_dssp -----CCHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCcCcHHHHHHHHHHHHHHhCcc
Confidence 35679999999999998888887654
No 21
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=25.78 E-value=26 Score=33.67 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=36.2
Q ss_pred CCC--cccHHHHHHHHHHhhcCCC--------------cccCCCCCCCcceecccchhhhCcccc
Q psy14488 16 NNC--SRWDLINVIKAFYVLSPYG--------------ITWPYKNNGKPSFKLEHLSFVNNLSHK 64 (368)
Q Consensus 16 nGn--SRwDli~vvra~yalrPeg--------------i~WP~~~dG~pSFKLe~Lt~ANgi~h~ 64 (368)
||. +..+|+.-++-+|-+.|+- +.|. ..|.+.|-|++|..-|.|||.
T Consensus 45 ~G~nit~~~l~~al~~~~n~~~~la~~l~~~a~~~~~~l~ts--~~g~~tf~L~~L~~Hn~iEHD 107 (299)
T 2ciw_A 45 DGRAISRETLQNAFLNHMGIANSVIELALTNAFVVCEYVTGS--DCGDSLVNLTLLAEPHAFEHD 107 (299)
T ss_dssp TCEEECHHHHHHHHHHHHCBCHHHHHHHHHHHHHHHHHHHSS--CCTTSEEESGGGGCTTTTSCS
T ss_pred CCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccccccc--CCCCcccChhhcccCCccccC
Confidence 554 6778888888877777663 4553 347789999999999999984
No 22
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=25.48 E-value=12 Score=29.79 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=38.3
Q ss_pred cccHHHHHHHHHHhhcCCCccc----CCCCCCCcceecccchhhhCcccccchhhhhhHH
Q psy14488 19 SRWDLINVIKAFYVLSPYGITW----PYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 74 (368)
Q Consensus 19 SRwDli~vvra~yalrPegi~W----P~~~dG~pSFKLe~Lt~ANgi~h~~AHDAlsDV~ 74 (368)
++-||.+++.....++..|-+| |.+++..|||++. ...|+-|-.+=.+=.||.
T Consensus 15 ~~~~i~~v~~~~~~lk~~G~~~~~~CPfh~e~~pSf~V~---~~k~~~~Cf~cg~gGd~i 71 (103)
T 1d0q_A 15 RGVDIVDVIGEYVQLKRQGRNYFGLCPFHGEKTPSFSVS---PEKQIFHCFGCGAGGNAF 71 (103)
T ss_dssp HHCCHHHHHTTTSCCEEETTEEEECCSSSCCSSCCEEEE---TTTTEEEETTTCCEECHH
T ss_pred HcCCHHHHHHHhCCeeecCCeEEEECCCCCCCCCcEEEE---cCCCEEEECCCCCCCCHH
Confidence 3678889987777777888776 8888889999985 356776654444445653
No 23
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=23.82 E-value=1.4e+02 Score=24.01 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcccCCCccccHHHHHHHHHHHHhhc-ccc-HHHHHHHHHHHHHH
Q psy14488 311 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA-NEH-DTKILNALLMYGKS 363 (368)
Q Consensus 311 ~~~W~~~~~~rl~~~~~~~~~~~~~~~~l~~L~~~~-~~~-~~~iL~~L~~y~~~ 363 (368)
+++.+++|++.+...+....|+++-.++|.--+..- +.. |..+|..+..|.++
T Consensus 43 ~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~rIr~fL~~ 97 (101)
T 4dhx_B 43 KDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQ 97 (101)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 466778888887543324578888888887655543 333 99999999998864
No 24
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=23.08 E-value=1.3e+02 Score=23.83 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcccCCCccccHHHHHHHHHHHHhhc-ccc-HHHHHHHHHHHHHHhhh
Q psy14488 311 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA-NEH-DTKILNALLMYGKSITQ 366 (368)
Q Consensus 311 ~~~W~~~~~~rl~~~~~~~~~~~~~~~~l~~L~~~~-~~~-~~~iL~~L~~y~~~l~~ 366 (368)
+++++++|++.+... ...|+++-.++|.--+..- +.. |..||..+..|.+....
T Consensus 39 ~Devr~~~r~~i~~~--~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~~v~ 94 (96)
T 3mhs_B 39 VDKVKDLTKSEMNIN--ESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIVD 94 (96)
T ss_dssp HHHHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHHhc--CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 466777888877543 2368888888877655443 333 99999999999987643
No 25
>3omd_A Uncharacterized protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, unknown function; HET: MSE; 1.50A {Leptospirillum rubarum}
Probab=20.14 E-value=1.1e+02 Score=26.17 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHcCChhhhhccCCCCCCccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q psy14488 259 ISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISR 321 (368)
Q Consensus 259 ~s~~Dk~~m~~i~~~~p~~l~~~~~~F~D~Rl~eLlfRyraRN~P~~L~~~E~~~W~~~~~~r 321 (368)
...-|++.| .+...+|+++...... -+--.+++--.+ .|.+..+|.+|...|.+++.+|
T Consensus 47 ~~~~D~~~l-~flgI~~~~~~~~V~~--~~sD~eil~wv~-~~~~~~~s~~eI~~WN~~~~~r 105 (145)
T 3omd_A 47 NCPLDQAFF-SFFGLDHEKFAEAVKS--RPQDQDMLAWVH-SQSPRSKNPKEVESFNREYESR 105 (145)
T ss_dssp TSHHHHHHH-HHHTCCHHHHHHHHTT--CCSHHHHHHHHH-HHCGGGGCHHHHHHHHHHHHHC
T ss_pred CChHHHHHH-HHhCCCHHHHHHHHHc--CCCHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhc
Confidence 355899999 6779999998777632 233355555555 5688899999999999999988
Done!