Your job contains 1 sequence.
>psy14488
MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN
LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH
MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI
PISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK
INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRAR
NFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY
GKSITQKI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14488
(368 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|SO_2790 - symbol:SO_2790 "exodeoxyribonuclease I... 550 3.8e-53 1
UNIPROTKB|Q483M2 - symbol:sbcB "Exodeoxyribonuclease I" s... 528 8.3e-51 1
TIGR_CMR|CPS_2014 - symbol:CPS_2014 "exodeoxyribonuclease... 528 8.3e-51 1
UNIPROTKB|P04995 - symbol:sbcB "exonuclease I, 3' --> 5' ... 524 2.2e-50 1
UNIPROTKB|Q9KSM2 - symbol:VC_1234 "Exodeoxyribonuclease I... 474 4.4e-45 1
TIGR_CMR|VC_1234 - symbol:VC_1234 "exodeoxyribonuclease I... 474 4.4e-45 1
TIGR_CMR|CBU_1363 - symbol:CBU_1363 "exodeoxyribonuclease... 164 3.2e-09 1
DICTYBASE|DDB_G0284147 - symbol:DDB_G0284147 species:4468... 122 7.9e-05 1
>TIGR_CMR|SO_2790 [details] [associations]
symbol:SO_2790 "exodeoxyribonuclease I" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS] [GO:0008852
"exodeoxyribonuclease I activity" evidence=ISS] InterPro:IPR012337
InterPro:IPR013620 InterPro:IPR023607 Pfam:PF08411
PIRSF:PIRSF000977 Pfam:PF00929 GO:GO:0006281 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR013520
SUPFAM:SSF53098 HOGENOM:HOG000276591 KO:K01141 OMA:PYAREWQ
ProtClustDB:PRK11779 GO:GO:0008852 HSSP:P04995 RefSeq:NP_718368.1
ProteinModelPortal:Q8EDG2 SMR:Q8EDG2 GeneID:1170490
KEGG:son:SO_2790 PATRIC:23525215 Uniprot:Q8EDG2
Length = 470
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 126/369 (34%), Positives = 204/369 (55%)
Query: 2 FWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNL 61
F+RN I+PY REW+N +RWD+I++++A Y P GI WP K +G PSFKLEHL+ N L
Sbjct: 114 FYRNFIDPYAREWQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGL 173
Query: 62 SHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHM 121
SH+KAHDA+SDV AT+ +A+LI+ P+L+ + LR+K+ V A+I +P +++
Sbjct: 174 SHEKAHDAMSDVYATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSK 233
Query: 122 FSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-- 179
S+ H +L+ P+ HP NKN +I NL D D+ +I+ + + +D
Sbjct: 234 ISAMHGCTTLIAPVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELADDEL 293
Query: 180 -IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKI 235
IP+ +HLN+ P + S K+L R D A +K +K + ++
Sbjct: 294 PIPVKQVHLNKCPFITS-AKILDDAQAERLSIDKAFARGQYKRLKAHPELREKL---AQL 349
Query: 236 FL-DYKINNSDLELNIDEELYNN-FISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEEL 293
F D + +D +L LY+ F S D K+ I+R P+ L+ ++ F++ ++ E+
Sbjct: 350 FEHDGEATTTDPDLM----LYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEM 405
Query: 294 IFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDT 351
+F YRARN+ E L +E RW+ + R ++ + L++E+LL+ + +EH
Sbjct: 406 LFRYRARNYPELLDDQESHRWRTFCQQRLADQD--------YLLKLENLLQDTEGDEHKQ 457
Query: 352 KILNALLMY 360
K+L AL Y
Sbjct: 458 KLLAALCHY 466
>UNIPROTKB|Q483M2 [details] [associations]
symbol:sbcB "Exodeoxyribonuclease I" species:167879
"Colwellia psychrerythraea 34H" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
InterPro:IPR012337 InterPro:IPR013620 InterPro:IPR023607
Pfam:PF08411 PIRSF:PIRSF000977 Pfam:PF00929 GO:GO:0006281
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006308 eggNOG:COG2925
HOGENOM:HOG000276591 KO:K01141 OMA:PYAREWQ ProtClustDB:PRK11779
GO:GO:0008852 RefSeq:YP_268744.1 ProteinModelPortal:Q483M2
SMR:Q483M2 STRING:Q483M2 GeneID:3520948 KEGG:cps:CPS_2014
PATRIC:21467155 BioCyc:CPSY167879:GI48-2084-MONOMER Uniprot:Q483M2
Length = 487
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 118/358 (32%), Positives = 198/358 (55%)
Query: 1 MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWP-YKNNGKP--SFKLEHLSF 57
+ +RN +PY REW+N SRWD+I++++A Y L P GI WP K +G+ SF+LE L+
Sbjct: 119 LLYRNFYDPYAREWQNGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTA 178
Query: 58 VNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFY 117
N++SH+ AHDA+SDV AT+ +A+LI+ P+L++FI +L+ K V I P +
Sbjct: 179 ANDISHEAAHDAMSDVYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVH 238
Query: 118 ITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK 177
+ SS H S P+ HP+NKN +I +L D L +I+ L + +
Sbjct: 239 TSSKVSSAHGCTSWFAPVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLA 298
Query: 178 ED---IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK 234
D IP+ +IH+N+ P++ +L N R + N+
Sbjct: 299 PDELPIPVKLIHVNKCPVIAPAKTLLPENAE-RLAIPRDVCLDNLALLRKHAELRDKLSD 357
Query: 235 IFLDYKINNSDLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEEL 293
+F +N D++ ++ LY +F S D ++ ILR +SP++L+N F F++++L L
Sbjct: 358 VFATSDFDNDDVDA--EQALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVL 415
Query: 294 IFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDT 351
+F YRARN+ TLS +E ++W++Y ++ + +++ F ++IE+L A+EH+T
Sbjct: 416 LFRYRARNYPYTLSTEEQQKWQQYCQNKLQYGGKGILSLDEFMMKIENL---AHEHET 470
>TIGR_CMR|CPS_2014 [details] [associations]
symbol:CPS_2014 "exodeoxyribonuclease I" species:167879
"Colwellia psychrerythraea 34H" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
InterPro:IPR012337 InterPro:IPR013620 InterPro:IPR023607
Pfam:PF08411 PIRSF:PIRSF000977 Pfam:PF00929 GO:GO:0006281
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006308 eggNOG:COG2925
HOGENOM:HOG000276591 KO:K01141 OMA:PYAREWQ ProtClustDB:PRK11779
GO:GO:0008852 RefSeq:YP_268744.1 ProteinModelPortal:Q483M2
SMR:Q483M2 STRING:Q483M2 GeneID:3520948 KEGG:cps:CPS_2014
PATRIC:21467155 BioCyc:CPSY167879:GI48-2084-MONOMER Uniprot:Q483M2
Length = 487
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 118/358 (32%), Positives = 198/358 (55%)
Query: 1 MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWP-YKNNGKP--SFKLEHLSF 57
+ +RN +PY REW+N SRWD+I++++A Y L P GI WP K +G+ SF+LE L+
Sbjct: 119 LLYRNFYDPYAREWQNGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTA 178
Query: 58 VNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFY 117
N++SH+ AHDA+SDV AT+ +A+LI+ P+L++FI +L+ K V I P +
Sbjct: 179 ANDISHEAAHDAMSDVYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVH 238
Query: 118 ITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK 177
+ SS H S P+ HP+NKN +I +L D L +I+ L + +
Sbjct: 239 TSSKVSSAHGCTSWFAPVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLA 298
Query: 178 ED---IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK 234
D IP+ +IH+N+ P++ +L N R + N+
Sbjct: 299 PDELPIPVKLIHVNKCPVIAPAKTLLPENAE-RLAIPRDVCLDNLALLRKHAELRDKLSD 357
Query: 235 IFLDYKINNSDLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEEL 293
+F +N D++ ++ LY +F S D ++ ILR +SP++L+N F F++++L L
Sbjct: 358 VFATSDFDNDDVDA--EQALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVL 415
Query: 294 IFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDT 351
+F YRARN+ TLS +E ++W++Y ++ + +++ F ++IE+L A+EH+T
Sbjct: 416 LFRYRARNYPYTLSTEEQQKWQQYCQNKLQYGGKGILSLDEFMMKIENL---AHEHET 470
>UNIPROTKB|P04995 [details] [associations]
symbol:sbcB "exonuclease I, 3' --> 5' specific;
deoxyribophosphodiesterase" species:83333 "Escherichia coli K-12"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008852
"exodeoxyribonuclease I activity" evidence=IEA;IDA] [GO:0006308
"DNA catabolic process" evidence=IDA] InterPro:IPR012337
InterPro:IPR013620 InterPro:IPR023607 Pfam:PF08411
PIRSF:PIRSF000977 Pfam:PF00929 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006281
GO:GO:0003676 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006308
EMBL:U00009 EMBL:J02641 PIR:B64966 RefSeq:NP_416515.1
RefSeq:YP_490253.1 PDB:1FXX PDB:2QXF PDB:3C94 PDB:3C95 PDB:3HL8
PDB:3HP9 PDBsum:1FXX PDBsum:2QXF PDBsum:3C94 PDBsum:3C95
PDBsum:3HL8 PDBsum:3HP9 ProteinModelPortal:P04995 SMR:P04995
DIP:DIP-10827N IntAct:P04995 MINT:MINT-1241098 PRIDE:P04995
EnsemblBacteria:EBESCT00000000980 EnsemblBacteria:EBESCT00000015407
GeneID:12931420 GeneID:946529 KEGG:ecj:Y75_p1973 KEGG:eco:b2011
PATRIC:32119357 EchoBASE:EB0919 EcoGene:EG10926 eggNOG:COG2925
HOGENOM:HOG000276591 KO:K01141 OMA:PYAREWQ ProtClustDB:PRK11779
BioCyc:EcoCyc:EG10926-MONOMER BioCyc:ECOL316407:JW1993-MONOMER
BioCyc:MetaCyc:EG10926-MONOMER BRENDA:3.1.11.1
EvolutionaryTrace:P04995 Genevestigator:P04995 GO:GO:0008852
Uniprot:P04995
Length = 475
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 119/372 (31%), Positives = 203/372 (54%)
Query: 1 MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60
+F+RN +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N
Sbjct: 115 IFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG 174
Query: 61 LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120
+ H AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++
Sbjct: 175 IEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSG 234
Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED- 179
MF + S + P+ HP N+N +I +L D L D + +R+ L K ++
Sbjct: 235 MFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA 294
Query: 180 -IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---I 235
+P+ ++H+N+ P V++ L R + N+K + N + +K I
Sbjct: 295 AVPVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAI 350
Query: 236 FLDYK-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELI 294
F + + SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+
Sbjct: 351 FAEAEPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLL 407
Query: 295 FLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI- 353
F YRARNF TL Y E +RW ++R F + + + E++ L+++ + K+
Sbjct: 408 FNYRARNFPGTLDYAEQQRWLEHRRQVFTPEF-----LQGYADELQMLVQQYADDKEKVA 462
Query: 354 -LNALLMYGKSI 364
L AL Y + I
Sbjct: 463 LLKALWQYAEEI 474
>UNIPROTKB|Q9KSM2 [details] [associations]
symbol:VC_1234 "Exodeoxyribonuclease I" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006308 "DNA catabolic process"
evidence=ISS] [GO:0008852 "exodeoxyribonuclease I activity"
evidence=ISS] InterPro:IPR012337 InterPro:IPR013620
InterPro:IPR023607 Pfam:PF08411 PIRSF:PIRSF000977 Pfam:PF00929
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003676
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006308 KO:K01141
OMA:PYAREWQ ProtClustDB:PRK11779 GO:GO:0008852 HSSP:P04995
PIR:B82227 RefSeq:NP_230879.1 ProteinModelPortal:Q9KSM2 SMR:Q9KSM2
DNASU:2614671 GeneID:2614671 KEGG:vch:VC1234 PATRIC:20081554
Uniprot:Q9KSM2
Length = 474
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 111/365 (30%), Positives = 196/365 (53%)
Query: 3 WRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLS 62
+RN I+PY W++ SRWDL++V++A + L P GI WP ++G SFKLEHLS N +
Sbjct: 115 YRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE 174
Query: 63 HKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMF 122
H AHDA++DV AT+ LA+ ++ P+LF++ ++R K+ + I P +++ M
Sbjct: 175 HSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGML 234
Query: 123 SSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--- 179
+ Y S + PI HP N+N +I +L DP+ L D ++ L + D
Sbjct: 235 GRERHYTSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELP 294
Query: 180 IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY 239
+P+ ++HLN+ PI ++ K L++ + D ++ I + I +K+ +
Sbjct: 295 VPVKLVHLNKCPI-LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVF 350
Query: 240 KINNS-DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 298
+ E ++D +LY F S D + I+R+ +P+ L ++ +K++E L+F YR
Sbjct: 351 SQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYR 410
Query: 299 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILN 355
AR++ TL+ E +RW + R Y ++N + + L +E+L+ + ++ D K IL
Sbjct: 411 ARHYPHTLTDTEQRRWAAH--CRDYFERN----LEGYMLNLENLVHE-HQADPKKMAILK 463
Query: 356 ALLMY 360
++ Y
Sbjct: 464 SVYHY 468
>TIGR_CMR|VC_1234 [details] [associations]
symbol:VC_1234 "exodeoxyribonuclease I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS] [GO:0008852
"exodeoxyribonuclease I activity" evidence=ISS] InterPro:IPR012337
InterPro:IPR013620 InterPro:IPR023607 Pfam:PF08411
PIRSF:PIRSF000977 Pfam:PF00929 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003676
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006308 KO:K01141
OMA:PYAREWQ ProtClustDB:PRK11779 GO:GO:0008852 HSSP:P04995
PIR:B82227 RefSeq:NP_230879.1 ProteinModelPortal:Q9KSM2 SMR:Q9KSM2
DNASU:2614671 GeneID:2614671 KEGG:vch:VC1234 PATRIC:20081554
Uniprot:Q9KSM2
Length = 474
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 111/365 (30%), Positives = 196/365 (53%)
Query: 3 WRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLS 62
+RN I+PY W++ SRWDL++V++A + L P GI WP ++G SFKLEHLS N +
Sbjct: 115 YRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE 174
Query: 63 HKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMF 122
H AHDA++DV AT+ LA+ ++ P+LF++ ++R K+ + I P +++ M
Sbjct: 175 HSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGML 234
Query: 123 SSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--- 179
+ Y S + PI HP N+N +I +L DP+ L D ++ L + D
Sbjct: 235 GRERHYTSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELP 294
Query: 180 IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY 239
+P+ ++HLN+ PI ++ K L++ + D ++ I + I +K+ +
Sbjct: 295 VPVKLVHLNKCPI-LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVF 350
Query: 240 KINNS-DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 298
+ E ++D +LY F S D + I+R+ +P+ L ++ +K++E L+F YR
Sbjct: 351 SQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYR 410
Query: 299 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILN 355
AR++ TL+ E +RW + R Y ++N + + L +E+L+ + ++ D K IL
Sbjct: 411 ARHYPHTLTDTEQRRWAAH--CRDYFERN----LEGYMLNLENLVHE-HQADPKKMAILK 463
Query: 356 ALLMY 360
++ Y
Sbjct: 464 SVYHY 468
>TIGR_CMR|CBU_1363 [details] [associations]
symbol:CBU_1363 "exodeoxyribonuclease I, putative"
species:227377 "Coxiella burnetii RSA 493" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
InterPro:IPR012337 InterPro:IPR013620 InterPro:IPR023607
Pfam:PF08411 PIRSF:PIRSF000977 Pfam:PF00929 GO:GO:0006281
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR013520 SUPFAM:SSF53098 KO:K01141 GO:GO:0008852
RefSeq:NP_820352.1 HSSP:P04995 ProteinModelPortal:Q83BX4
GeneID:1209269 KEGG:cbu:CBU_1363 PATRIC:17931469
HOGENOM:HOG000065258 OMA:KAQMEFQ ProtClustDB:CLSK914731
BioCyc:CBUR227377:GJ7S-1353-MONOMER Uniprot:Q83BX4
Length = 458
Score = 164 (62.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 35/101 (34%), Positives = 57/101 (56%)
Query: 2 FWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKP-SFKLEHLSFVNN 60
F+RNL+ PY ++ N C R DL + +Y+ P + WP P KLE+LS N
Sbjct: 111 FYRNLLPPYTHQYDNFCGRMDLYPLTILYYLFKPNALNWP-----DPFDLKLENLSKANQ 165
Query: 61 LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKK 101
L+ +AH+A+ DV A++ LA+L+ N ++ +++ KK
Sbjct: 166 LAEGQAHNAMVDVEASVALAKLLMNQEA-MWRYVIGYFDKK 205
>DICTYBASE|DDB_G0284147 [details] [associations]
symbol:DDB_G0284147 species:44689 "Dictyostelium
discoideum" [GO:0007067 "mitosis" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
InterPro:IPR008685 Pfam:PF05859 dictyBase:DDB_G0284147
GO:GO:0005634 GO:GO:0000775 GO:GO:0007067 EMBL:AAFI02000063
RefSeq:XP_638733.1 EnsemblProtists:DDB0218571 GeneID:8624403
KEGG:ddi:DDB_G0284147 InParanoid:Q54Q64 Uniprot:Q54Q64
Length = 315
Score = 122 (48.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 75/302 (24%), Positives = 131/302 (43%)
Query: 85 NNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI---CI--HP 139
NNN N L + ++ E + P+ +I + S H Y + C+ HP
Sbjct: 34 NNNNNNNNEDSLLYDENHLKREADFFKFHPYSFIDDVHESTHDYCADSADFIESCLLGHP 93
Query: 140 M-NKNI----LI------TWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIPISMIHLN 188
+ N N LI W LL ++ ++NK +YL + ED+ ++
Sbjct: 94 LFNNNQEFKQLIQEGTNNVWELL---EQIFTKNLNKYEEYLLSSILNIPEDL---ILPDE 147
Query: 189 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 248
+ PI I N ++N + D N + N S + N + I K D ++N L +
Sbjct: 148 QQPINIFN----NNNNRNKNNSDNNNSHSNNNNNSKLYNKSNIIDKEMEDLRVNIQKL-I 202
Query: 249 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 308
N ++++ N + K ++KL L+S+ N N ++K +E + + + R +E +Y
Sbjct: 203 NENDQIKNKIQTTKQDIKL--LQSI------NTNLKTDSKNIESIADINQKRKVLE-YNY 253
Query: 309 KELKRWKKYRISRFYNKKNNLYNINMFYLEI-ESLLKKANEHDTKILN-ALLMYGKSITQ 366
+ LK ++S N NN N N L I +SLL K N + K +N ++ +I
Sbjct: 254 QVLKS----KLSNTINSDNNNNNNNNNNLCINKSLLDKMNSLNLKTVNECTIIESTNIID 309
Query: 367 KI 368
K+
Sbjct: 310 KV 311
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.139 0.429 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 368 368 0.00085 117 3 11 22 0.48 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 622 (66 KB)
Total size of DFA: 270 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.35u 0.10s 37.45t Elapsed: 00:00:19
Total cpu time: 37.35u 0.10s 37.45t Elapsed: 00:00:22
Start: Thu Aug 15 12:28:14 2013 End: Thu Aug 15 12:28:36 2013