RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14488
(368 letters)
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
(Escherichia coli K-12) [TaxId: 83333]}
Length = 467
Score = 133 bits (334), Expect = 1e-35
Identities = 110/368 (29%), Positives = 191/368 (51%), Gaps = 12/368 (3%)
Query: 1 MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60
+F+RN +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N
Sbjct: 108 IFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG 167
Query: 61 LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120
+ H AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++
Sbjct: 168 IEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSG 227
Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLC--FKKNSFKE 178
MF + S + P+ HP N+N +I +L D L D + +R+ L
Sbjct: 228 MFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA 287
Query: 179 DIPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD 238
+P+ ++H+N+ P++ + + + +N N K + +
Sbjct: 288 AVPVKLVHINKCPVLAQANTLRPED---ADRLGINRQHCLDNLKILRENPQVREKVVAIF 344
Query: 239 YKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 298
+ N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 345 AEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 404
Query: 299 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNA 356
ARNF TL Y E +RW ++R F + + + E++ L+++ + K +L A
Sbjct: 405 ARNFPGTLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKA 459
Query: 357 LLMYGKSI 364
L Y I
Sbjct: 460 LWQYADEI 467
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 43.0 bits (100), Expect = 2e-05
Identities = 11/93 (11%), Positives = 22/93 (23%), Gaps = 8/93 (8%)
Query: 2 FWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHL-SFVNN 60
+ + D + ++ +G G+ + L L
Sbjct: 126 LLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRAR----GRQGYSLGSLFHRYFR 181
Query: 61 LSHKKAHDALSDVRATLGLARLIRNNNPRLFNF 93
AH A DV + + L +
Sbjct: 182 AEPSAAHSAEGDVHTL---LLIFLHRAAELLAW 211
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 226
Score = 34.6 bits (78), Expect = 0.012
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 3 WRNLINPYER-EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHL-SFVNN 60
+ L R + ++ I A L + P N + S+ L + + +
Sbjct: 123 FPLLQTELARLSTPSPLDGTFCVDSIAALKALEQA--SSPSGNGSRKSYSLGSIYTRLYW 180
Query: 61 LSHKKAHDALSDVRATLGLARLIRN 85
+ +H A DV L + +
Sbjct: 181 QAPTDSHTAEGDVLTLLSICQWKPQ 205
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli
[TaxId: 562]}
Length = 180
Score = 31.8 bits (71), Expect = 0.083
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 50 FKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRL 90
+ ++ + + H A+ D+R ++ R + +L
Sbjct: 140 ARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL 180
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein,
ISG20 {Human (Homo sapiens) [TaxId: 9606]}
Length = 173
Score = 29.6 bits (65), Expect = 0.39
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 14 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 73
K + S + + + + + + E L + + H ++ D
Sbjct: 93 LKEDMSGYTIYDTSTDRLLWREAKLDHCRRV--SLRVLSERLLHKSIQNSLLGHSSVEDA 150
Query: 74 RATLGLARLIR 84
RAT+ L ++ +
Sbjct: 151 RATMELYQISQ 161
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 202
Score = 28.9 bits (63), Expect = 0.73
Identities = 8/81 (9%), Positives = 18/81 (22%), Gaps = 2/81 (2%)
Query: 1 MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLS--FV 58
+ + + + + + + T L
Sbjct: 107 KRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG 166
Query: 59 NNLSHKKAHDALSDVRATLGL 79
+++AH A D T L
Sbjct: 167 MEFDNREAHSARYDTEKTAEL 187
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 200
Score = 28.7 bits (63), Expect = 0.74
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 14 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSH-KKAHDALSD 72
C L A ++ + + KL + + + + H L D
Sbjct: 117 LNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDD 176
Query: 73 VRATLGLA-RLIRNNNPRLFN 92
+ +A R++++ N
Sbjct: 177 SKNIARIAVRMLQDGCELRIN 197
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 27.8 bits (61), Expect = 2.0
Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 266 KLAILRSMSPK-KLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISRFYN 324
K+ L + S + + ++N E +L E ++ + + +L W+ +++R
Sbjct: 15 KIDSLTAGSRQDEKLDINIDEEVHRLRE-----KSVELTRKI-FADLGAWQIAQLARHPQ 68
Query: 325 KKNNLYNINMFYLEIESL 342
+ L + + + E + L
Sbjct: 69 RPYTLDYVRLAFDEFDEL 86
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 55
Score = 25.5 bits (56), Expect = 2.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 250 IDEELYNNFIS---KKDNLKLAILRSMSPKKLSNVNFCFENKKLEELI 294
ID +L + F S +KD + + +LR + K L + N+ +EEL+
Sbjct: 8 IDHDLIDEFESQGFEKDKI-VEVLRRLGVKSLDPNDNNTANRIIEELL 54
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the
epsilon subunit of DNA polymerase III {Escherichia coli
[TaxId: 562]}
Length = 174
Score = 27.3 bits (59), Expect = 2.2
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 49 SFKLEHLS--FVNNLSHKKAHDALSDVRATLGL 79
L+ L + + S + H AL D + +
Sbjct: 136 RNSLDALCARYEIDNSKRTLHGALLDAQILAEV 168
>d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 140
Score = 26.7 bits (58), Expect = 2.6
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 1/84 (1%)
Query: 72 DVRA-TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 130
DVR T ++ IRN SL + G + F +
Sbjct: 5 DVREITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQGGLIRE 64
Query: 131 LMWPICIHPMNKNILITWNLLHDP 154
+ K +L DP
Sbjct: 65 RFASRILEADPKKLLNEAGDNLDP 88
>d2gana1 d.108.1.1 (A:1-182) Hypothetical protein PH0736 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 182
Score = 25.9 bits (56), Expect = 5.7
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 298 RARNFIETLSYKELKRWKKYRISRFYNKK 326
+ ++E+ R+K++ I +F +KK
Sbjct: 152 AYSYYYMKKGFREIMRYKEFVILKFNHKK 180
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 25.6 bits (55), Expect = 8.9
Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 11/143 (7%)
Query: 196 NLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDEELY 255
+ +S+ MFR A ++ + + + +
Sbjct: 25 GIPHISTGDMFRAAMKEGT--PLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFL 82
Query: 256 NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWK 315
+ + A+ ++ + + + L+ A + T+ R +
Sbjct: 83 LDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDNEATV----ANRLE 138
Query: 316 KYR-----ISRFYNKKNNLYNIN 333
+ FY +K L NIN
Sbjct: 139 VNMKQMKPLVDFYEQKGYLRNIN 161
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 25.2 bits (54), Expect = 9.7
Identities = 20/143 (13%), Positives = 37/143 (25%), Gaps = 11/143 (7%)
Query: 196 NLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDEELY 255
+S+ MFR + A S ++ + D E +
Sbjct: 25 GTPHISTGDMFRAAI--QEGTELGVKAKSFMDQ----GALVPDEVTIGIVRERLSKSDCD 78
Query: 256 NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWK 315
N F+ + ++ ++ AR + R +
Sbjct: 79 NGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTADDNPDTVTNRLE 138
Query: 316 KYR-----ISRFYNKKNNLYNIN 333
+ FY+ K L NIN
Sbjct: 139 VNMNQTAPLLAFYDSKEVLVNIN 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.429
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,455,529
Number of extensions: 71960
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 36
Length of query: 368
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,213,086
Effective search space: 340877166
Effective search space used: 340877166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.6 bits)