BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14489
(284 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|399018904|ref|ZP_10721060.1| 5'-3' exonuclease (including N-terminal domain of PolI), partial
[Herbaspirillum sp. CF444]
gi|398099216|gb|EJL89485.1| 5'-3' exonuclease (including N-terminal domain of PolI), partial
[Herbaspirillum sp. CF444]
Length = 293
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 162/276 (58%), Positives = 213/276 (77%), Gaps = 3/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
MQ TLLLVDGSS +YRAF+ALPD+RN + P GALYG I MLR+L +Y A+YIACIFDA
Sbjct: 1 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYIACIFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ LY YKATRK MP +L LQI IH V+A+GWPIL+++G+EADDVIGTL +
Sbjct: 61 KGKTFRDDLYTEYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLGVR 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + LK I+ST DKDMAQLV++ + L+N +N+ DR +I++FGV PE+IVDY SLI
Sbjct: 121 AA-EEGLKTIVSTGDKDMAQLVNDHVTLVNTMSNETMDRAGVIAKFGVPPERIVDYLSLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK L QY+SL+ ++ NA+ I GV+G+NLR AL WLP+ + ++
Sbjct: 180 GDTVDNVPGVEKCGPKTAVKWLTQYDSLDGVMANADKITGVVGENLRKALPWLPQARVLV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+KTDCDL+ ++ +I +SL +QP D L ++F +Y
Sbjct: 240 TVKTDCDLSAHMSTILDSLTVQPNDNVALREIFTRY 275
>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
Length = 920
Score = 346 bits (888), Expect = 6e-93, Method: Composition-based stats.
Identities = 161/278 (57%), Positives = 214/278 (76%), Gaps = 3/278 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
MQ TLLLVDGSS +YRAF+ALPD+RN + P GALYG I MLR+L +Y A+Y+AC+FDA
Sbjct: 1 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ LYP YKATRK MP +L LQI IH V+A+GWPIL+++G+EADDVIGTL+ Q
Sbjct: 61 KGKTFRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T L I+ST DKDMAQLV+ + L+N +N++ D + ++FGV PE+IVDY SLI
Sbjct: 121 A-TAAGLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK L Y +L+ ++ NA+ I GV+G+NLR AL+WLP+ + ++
Sbjct: 180 GDTVDNVPGVEKCGPKTAVKWLTAYGTLDGVMANADKISGVVGENLRRALDWLPQGRVLV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
T+KTDCDL+ ++ SI ESL +QP+D+ +L +LF +Y
Sbjct: 240 TVKTDCDLSAHMSSILESLTMQPQDKDVLKELFTRYNF 277
>gi|409409025|ref|ZP_11257460.1| DNA polymerase I protein [Herbaspirillum sp. GW103]
gi|386432347|gb|EIJ45175.1| DNA polymerase I protein [Herbaspirillum sp. GW103]
Length = 920
Score = 345 bits (886), Expect = 9e-93, Method: Composition-based stats.
Identities = 161/278 (57%), Positives = 214/278 (76%), Gaps = 3/278 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
MQ TLLLVDGSS +YRAF+ALPD+RN + P GALYG I MLR+L +Y A+Y+AC+FDA
Sbjct: 1 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ LYP YKATRK MP +L LQI IH V+A+GWPIL+++G+EADDVIGTL+ Q
Sbjct: 61 KGKTFRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T L I+ST DKDMAQLV+ + L+N +N++ D + ++FGV PE+IVDY SLI
Sbjct: 121 A-TAAGLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK L Y SL+ ++ NA+ I GV+G+NLR AL+WLP+ + ++
Sbjct: 180 GDTVDNVPGVEKCGPKTAVKWLTAYGSLDGVMANADKITGVVGENLRKALDWLPQGRVLV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
T+KTDCDL++++ SI ESL +QP+D+ +L +F +Y
Sbjct: 240 TVKTDCDLSQHMQSILESLTMQPQDKDVLKDIFTRYNF 277
>gi|340785918|ref|YP_004751383.1| DNA polymerase I [Collimonas fungivorans Ter331]
gi|340551185|gb|AEK60560.1| DNA polymerase I [Collimonas fungivorans Ter331]
Length = 1165
Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats.
Identities = 159/278 (57%), Positives = 216/278 (77%), Gaps = 3/278 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
MQ TLLLVDGSS +YRAF+ALPD+RN N P GA+YG I MLR+L +Y + Y+AC+FDA
Sbjct: 241 MQKTLLLVDGSSYLYRAFHALPDMRNAANEPTGAMYGIINMLRRLRLDYPSAYLACVFDA 300
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +Y YKATR MP +L+ QI IH V+A+GWPIL+++GVEADDVIGTL Q
Sbjct: 301 KGKTFRDDMYADYKATRASMPEDLVKQITPIHAAVRAMGWPILMVEGVEADDVIGTLTVQ 360
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
AVT H ++ I+ST DKD+AQLV++ + LIN +N+ DR +I++FGV PE+IVDY +LI
Sbjct: 361 AVT-HGMQAIVSTGDKDLAQLVNDNVTLINTMSNETLDRAGVIAKFGVPPERIVDYLTLI 419
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L QY++++ +I +A +I G +G+NLR L+WLPK K+++
Sbjct: 420 GDTVDNIPGVAKVGPKTAVKWLAQYDTVDQVIAHAADIGGAVGENLRQVLDWLPKAKELV 479
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
T+KTDCDL+ ++VSIPESL +D++ L++LF +Y
Sbjct: 480 TVKTDCDLSAHMVSIPESLKAPEQDKETLIELFTRYNF 517
>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
Length = 914
Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats.
Identities = 157/276 (56%), Positives = 213/276 (77%), Gaps = 3/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
MQNTLLLVDGSS +YRAF+ALPD+RN + P GALYG I MLR+L ++ A YIAC+FDA
Sbjct: 1 MQNTLLLVDGSSYLYRAFHALPDLRNKEGAPTGALYGIINMLRRLRSDFPAAYIACVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ LY YKA R MP +L Q+ IH+ V+A+GWP+++++GVEADDVIGTLA
Sbjct: 61 KGKTFRDDLYAEYKAQRASMPEDLARQVEPIHEAVRAMGWPLIMVEGVEADDVIGTLAVD 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
AV +H +K +IST DKD+AQLV++ + LIN +N+ DR ++++FGV PE+IVDY +LI
Sbjct: 121 AV-RHGMKAVISTGDKDLAQLVNDDVMLINTMSNERLDRDGVLAKFGVPPERIVDYLTLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L QY +L+ I+ NA NI G +G+NLR AL+WLP+ K ++
Sbjct: 180 GDTVDNVPGVSKVGPKTAVKWLTQYGTLDGIVENAANIGGAVGENLRKALDWLPQAKVLI 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+KTDCDL ++VSIPESL+ + +D ++ L+ ++
Sbjct: 240 TVKTDCDLVDHMVSIPESLMAKEQDPAKMIDLYARF 275
>gi|398835989|ref|ZP_10593339.1| DNA polymerase I [Herbaspirillum sp. YR522]
gi|398214311|gb|EJN00893.1| DNA polymerase I [Herbaspirillum sp. YR522]
Length = 917
Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats.
Identities = 161/278 (57%), Positives = 210/278 (75%), Gaps = 3/278 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
MQ TLLLVDGSS +YRAF+ALPD+RN + P GALYG I MLR+L +Y A+Y+AC+FDA
Sbjct: 1 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ LY YKATRK MP +L LQI IH V+A+GWPIL+++G+EADDVIGTL+ Q
Sbjct: 61 KGKTFRDDLYADYKATRKAMPDDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T L I+ST DKDMAQLV+ ++ L+N +N+I D + +FGV PE+IVDY SLI
Sbjct: 121 A-TAAGLDTIVSTGDKDMAQLVNERVTLVNTMSNEILDPKGVNEKFGVPPERIVDYLSLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK LN Y SL+ ++ NA I GV+G+NLR AL WLP+ + ++
Sbjct: 180 GDTVDNVPGVEKCGPKTAVKWLNTYGSLDGVMENAAKITGVVGENLRKALGWLPQARVLV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
T+KTDCDL+ ++ +I +SL +QP+D +L LF +Y
Sbjct: 240 TVKTDCDLSAHMGTILDSLTMQPQDNAVLKDLFARYNF 277
>gi|395760857|ref|ZP_10441526.1| DNA polymerase I [Janthinobacterium lividum PAMC 25724]
Length = 916
Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats.
Identities = 153/281 (54%), Positives = 212/281 (75%), Gaps = 3/281 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M NTLLLVDGSS +YRAF+ALPD+R+ D +P GA++G + MLR+L +Y A YIAC+FDA
Sbjct: 1 MHNTLLLVDGSSYLYRAFHALPDLRSPDGYPTGAMHGMVNMLRRLRADYPAAYIACVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKATR MP +L LQI IH+ V+A+GWPIL++ GVEADDVIGTLA Q
Sbjct: 61 KGKTFRDDMYPEYKATRASMPDDLRLQIEPIHEAVRAMGWPILMVDGVEADDVIGTLAVQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + V++ST DKD+AQLV++++ LIN +N+ D ++++FGV P++I+DY SLI
Sbjct: 121 AAAA-GMNVVVSTGDKDLAQLVNSQVTLINTMSNEKLDEAAVLAKFGVPPQRIIDYLSLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K GPKTAVK L Y+SLE +I NA + G +G+NLR AL WLP+ + ++
Sbjct: 180 GDTVDNVPGVSKCGPKTAVKWLTLYDSLEGVIENAAQVGGAVGENLRTALPWLPQARALI 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
T+KTDCDL++++ +I +SL + +D++ L+ FN+Y L
Sbjct: 240 TVKTDCDLSQHMTTIADSLAAKHEDKEALLAFFNRYGFKAL 280
>gi|445494914|ref|ZP_21461958.1| DNA polymerase I [Janthinobacterium sp. HH01]
gi|444791075|gb|ELX12622.1| DNA polymerase I [Janthinobacterium sp. HH01]
Length = 924
Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats.
Identities = 152/281 (54%), Positives = 214/281 (76%), Gaps = 3/281 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
MQNTLLLVDGSS +YRAF+ALPD+R+ D P GA++G + MLR+L ++ A YIAC+FDA
Sbjct: 1 MQNTLLLVDGSSYLYRAFHALPDLRSADGHPTGAMHGMVNMLRRLRADFPAAYIACVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKATR MP +L LQI IH+ VKA+GWPIL+++GVEADDVIGTL+ Q
Sbjct: 61 KGKTFRDDMYPEYKATRASMPDDLRLQIEPIHEAVKAMGWPILMVEGVEADDVIGTLSVQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + + V++ST DKD+AQLV++K+ LIN N+ D ++++FGV P +I+DY +LI
Sbjct: 121 A-AQAGMNVVVSTGDKDLAQLVNDKVMLINTMTNEKMDEAGVLAKFGVPPNRIIDYLTLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K GPKTA+K L Y++L+ +I NA I G +G+NLR AL+WLPK ++++
Sbjct: 180 GDTVDNVPGVSKCGPKTALKWLTAYDTLDGVIANAAQIGGAVGENLRNALDWLPKGRELI 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
T+K DCDL++++ +I ESL+ + +D++ L+ F+KY L
Sbjct: 240 TVKLDCDLSEHMTTIAESLVARGEDKETLLAFFSKYGFKTL 280
>gi|427402574|ref|ZP_18893571.1| DNA polymerase I [Massilia timonae CCUG 45783]
gi|425718380|gb|EKU81327.1| DNA polymerase I [Massilia timonae CCUG 45783]
Length = 944
Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats.
Identities = 151/281 (53%), Positives = 208/281 (74%), Gaps = 3/281 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M NTLLLVDGSS +YRA++ALPD+R+ D FP GA++G + MLR+L ++ A YIAC+FDA
Sbjct: 22 MDNTLLLVDGSSYLYRAYHALPDLRSPDGFPTGAMHGMVNMLRRLRADFPAAYIACVFDA 81
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ LYP YKATR MP +L QI IH++V+ +GWPIL++ GVEADDVIGTLA Q
Sbjct: 82 KGKTFRDDLYPEYKATRASMPEDLGKQIEPIHEVVRYMGWPILMVDGVEADDVIGTLAVQ 141
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T +K ++ST DKD+AQLV++K+ LIN N+ D ++++FGV P +I+DY +L+
Sbjct: 142 A-TARGMKTVVSTGDKDLAQLVNDKVMLINTMTNERMDEAGVLAKFGVPPNRIIDYLTLV 200
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K GPKTAVK L + SL+ +I NA +I G +G NL+ AL WLPK ++++
Sbjct: 201 GDTVDNVPGVAKCGPKTAVKWLTLHGSLDGVIENAASIGGAVGANLQAALEWLPKGRELI 260
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
T+KTDCDL K+++S ESL+ +P+D + L F +Y +
Sbjct: 261 TVKTDCDLVKHVISFEESLVGRPEDAEALRDFFQRYGFKTM 301
>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
Length = 960
Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats.
Identities = 151/275 (54%), Positives = 206/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAK
Sbjct: 21 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAK 80
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A
Sbjct: 81 GKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERA 140
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ ++ST DKD+AQLV++ + L+N +N+ D + ++FGV PEKIVDY SLIG
Sbjct: 141 -AREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVDYLSLIG 199
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT
Sbjct: 200 DTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLT 259
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL+ ++ S ++L+ +D L F +Y
Sbjct: 260 VKTDCDLSPDVSSF-DALVDGGEDRARLADFFGRY 293
>gi|421897737|ref|ZP_16328104.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
Length = 944
Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats.
Identities = 151/275 (54%), Positives = 206/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAK
Sbjct: 5 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAK 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A
Sbjct: 65 GKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ ++ST DKD+AQLV++ + L+N +N+ D + ++FGV PEKIVDY SLIG
Sbjct: 125 -AREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVDYLSLIG 183
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT
Sbjct: 184 DTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRSTLDWLPKGRELLT 243
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL+ ++ S ++L+ +D L F +Y
Sbjct: 244 VKTDCDLSPDVPSF-DALVDGGEDRARLADFFGRY 277
>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
Length = 912
Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats.
Identities = 148/271 (54%), Positives = 208/271 (76%), Gaps = 4/271 (1%)
Query: 6 LLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNY-RATYIACIFDAKGKN 64
+LVDGSS +YRAF+A+PD+R + P GA+YG I MLR+L K+Y A Y+AC+FDAKGK
Sbjct: 1 MLVDGSSYLYRAFHAMPDLRGPNGAPTGAIYGMINMLRRLRKDYPDAEYMACVFDAKGKT 60
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L+ QI IH+ V+A+GWPIL+++G+EADDVIGTLA +AV K
Sbjct: 61 FRDDLYAEYKAQRASMPDDLVKQIEPIHEAVRAMGWPILMVEGIEADDVIGTLAVEAV-K 119
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
H + +IST DKD+AQLV++++ LIN +N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 120 HGMDTVISTGDKDLAQLVNDRVMLINTMSNEKLDRDGVIAKFGVPPERIIDYLTLIGDTV 179
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTAVK L QY +L+ I+ +A +IKG +G NLR AL+WLP+ K ++T+KT
Sbjct: 180 DNVPGVDKVGPKTAVKWLTQYGTLDGIVEHAADIKGAVGDNLRRALDWLPQAKTLITVKT 239
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
DCDL+ ++ +I ESL +P+D+ ++ F +
Sbjct: 240 DCDLSGHMDTIVESLTQRPEDKDAMIDFFTR 270
>gi|344171961|emb|CCA84587.1| DNA polymerase I (POL I) [Ralstonia syzygii R24]
Length = 944
Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats.
Identities = 150/275 (54%), Positives = 205/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAK
Sbjct: 5 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAK 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTL ++A
Sbjct: 65 GKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLTERA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ ++ST DKD+AQLV++ + L+N +N+ D ++++FGV PEKIVDY SLIG
Sbjct: 125 -AREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPEKIVDYLSLIG 183
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L +Y SL+N+I A IKGV+G+NLR L+WLPK + +LT
Sbjct: 184 DTVDNVPGVPKVGPKTAVKWLGEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRALLT 243
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL + ++ E+L+ +D L+ F++Y
Sbjct: 244 VKTDCDLATEVPTL-EALVDGGEDRAKLVDFFSRY 277
>gi|421891276|ref|ZP_16322087.1| DNA polymerase I (POL I) [Ralstonia solanacearum K60-1]
gi|378963385|emb|CCF98835.1| DNA polymerase I (POL I) [Ralstonia solanacearum K60-1]
Length = 944
Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats.
Identities = 151/275 (54%), Positives = 206/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAK
Sbjct: 5 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAK 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A
Sbjct: 65 GKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ ++ST DKD+AQLV++ + L+N +N+ D + ++FGV PEKIVDY SLIG
Sbjct: 125 -AREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVDYLSLIG 183
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT
Sbjct: 184 DTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLT 243
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL+ ++ S ++L+ +D L F +Y
Sbjct: 244 VKTDCDLSPDVPSF-DALVDGGEDRARLADFFGRY 277
>gi|386332868|ref|YP_006029037.1| dna polymeraseIprotein [Ralstonia solanacearum Po82]
gi|334195316|gb|AEG68501.1| dna polymeraseIprotein [Ralstonia solanacearum Po82]
Length = 944
Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats.
Identities = 151/275 (54%), Positives = 206/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAK
Sbjct: 5 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAK 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A
Sbjct: 65 GKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ ++ST DKD+AQLV++ + L+N +N+ D + ++FGV PEKIVDY SLIG
Sbjct: 125 -AREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVDYLSLIG 183
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT
Sbjct: 184 DTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLT 243
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL+ ++ S ++L+ +D L F +Y
Sbjct: 244 VKTDCDLSPDVPSF-DALVDGGEDRARLADFFGRY 277
>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
Length = 944
Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats.
Identities = 151/275 (54%), Positives = 205/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAK
Sbjct: 5 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAK 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A
Sbjct: 65 GKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ ++ST DKD+AQLV++ + L+N N+ D + ++FGV PEKIVDY SLIG
Sbjct: 125 -AREGIRTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPEKIVDYLSLIG 183
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT
Sbjct: 184 DTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLT 243
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL+ ++ S ++L+ +D L F +Y
Sbjct: 244 VKTDCDLSPDVPSF-DALVDGGEDRARLADFFGRY 277
>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
Length = 946
Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats.
Identities = 151/275 (54%), Positives = 205/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAK
Sbjct: 7 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAK 66
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A
Sbjct: 67 GKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERA 126
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ ++ST DKD+AQLV++ + L+N N+ D + ++FGV PEKIVDY SLIG
Sbjct: 127 -AREGIRTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPEKIVDYLSLIG 185
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT
Sbjct: 186 DTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLT 245
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL+ ++ S ++L+ +D L F +Y
Sbjct: 246 VKTDCDLSPDVPSF-DALVDGGEDRARLADFFGRY 279
>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
Length = 917
Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats.
Identities = 149/276 (53%), Positives = 206/276 (74%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNY-RATYIACIFD 59
M TLLLVDGSS +YRAF+A+PD+R + P GA+YG I MLR+L K+Y A Y+AC+FD
Sbjct: 7 MNKTLLLVDGSSYLYRAFHAMPDLRGPEGAPTGAIYGMINMLRRLRKDYPDAEYMACVFD 66
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
AKGK FR+ LY YKA R MP +L+ QI IH+ V+A+GWPIL++ G+EADDVI TLA
Sbjct: 67 AKGKTFRDDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDVIATLAV 126
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
AV H + +IST DKD+AQLV+ + L+N + +I DR ++++FGV PE+IVDY +L
Sbjct: 127 AAV-GHGINTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIVDYLTL 185
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV+K+GPKTAVK L QY +L+ I+ +A IKGV+G+NLR AL+WLP+ K +
Sbjct: 186 VGDTVDNVPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIKGVVGENLRRALDWLPQAKVL 245
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
+T+KTDCDL+ ++ IPESL + +D + ++ F +
Sbjct: 246 ITVKTDCDLSAHMTEIPESLTQKTEDIEAMVAFFKR 281
>gi|134093551|ref|YP_001098626.1| DNA polymerase I [Herminiimonas arsenicoxydans]
Length = 911
Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats.
Identities = 149/276 (53%), Positives = 206/276 (74%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNY-RATYIACIFD 59
M TLLLVDGSS +YRAF+A+PD+R + P GA+YG I MLR+L K+Y A Y+AC+FD
Sbjct: 1 MNKTLLLVDGSSYLYRAFHAMPDLRGPEGAPTGAIYGMINMLRRLRKDYPDAEYMACVFD 60
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
AKGK FR+ LY YKA R MP +L+ QI IH+ V+A+GWPIL++ G+EADDVI TLA
Sbjct: 61 AKGKTFRDDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDVIATLAV 120
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
AV H + +IST DKD+AQLV+ + L+N + +I DR ++++FGV PE+IVDY +L
Sbjct: 121 AAV-GHGINTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIVDYLTL 179
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV+K+GPKTAVK L QY +L+ I+ +A IKGV+G+NLR AL+WLP+ K +
Sbjct: 180 VGDTVDNVPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIKGVVGENLRRALDWLPQAKVL 239
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
+T+KTDCDL+ ++ IPESL + +D + ++ F +
Sbjct: 240 ITVKTDCDLSAHMTEIPESLTQKTEDIEAMVAFFKR 275
>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
Length = 937
Score = 319 bits (817), Expect = 9e-85, Method: Composition-based stats.
Identities = 152/275 (55%), Positives = 206/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y ACIFDAK
Sbjct: 5 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACIFDAK 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL+I+GVEADDVIGTLA++A
Sbjct: 65 GKTFRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVIEGVEADDVIGTLAERA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ I+ST DKD+AQLV++ + L+N N+ D + ++FGV PE+IVDY SLIG
Sbjct: 125 -AREGVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVDYLSLIG 183
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L ++ SL+N+I A IKGV+G+NLR L WLPK +++LT
Sbjct: 184 DTVDNVPGVPKVGPKTAVKWLTEFGSLDNVIARAGEIKGVVGENLRNTLEWLPKGRELLT 243
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+K DCDL+K + + ++LI +D+ L+ F++Y
Sbjct: 244 VKLDCDLSKEVPTF-DALIDGGEDKSKLVDFFSRY 277
>gi|344167306|emb|CCA79516.1| DNA polymerase I (POL I) [blood disease bacterium R229]
Length = 944
Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats.
Identities = 149/275 (54%), Positives = 206/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAK
Sbjct: 5 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAK 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTL ++A
Sbjct: 65 GKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLTERA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ ++ST DKD+AQLV++ + L+N +N+ D ++++FGV PEKIVDY SLIG
Sbjct: 125 -AREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPEKIVDYLSLIG 183
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT
Sbjct: 184 DTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLT 243
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+K DCDL + ++ E+L+ +D L+ F++Y
Sbjct: 244 VKIDCDLATEVPTL-EALVDGGEDRAKLVDFFSRY 277
>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
Length = 944
Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats.
Identities = 149/275 (54%), Positives = 205/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAK
Sbjct: 5 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAK 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTL ++A
Sbjct: 65 GKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLTERA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ ++ST DKD+AQLV++ + L+N +N+ D ++++FGV PEKIVDY SLIG
Sbjct: 125 -AREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPEKIVDYLSLIG 183
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L +Y SL+N+I A IKGV+G+NLR L+WLPK +++LT
Sbjct: 184 DTVDNVPGVPKVGPKTAVKWLGEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLT 243
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+K DCDL + ++ E+L+ +D L+ F++Y
Sbjct: 244 VKIDCDLATEVPTL-EALVDGGEDRAKLVDFFSRY 277
>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
gi|404396629|ref|ZP_10988423.1| DNA polymerase I [Ralstonia sp. 5_2_56FAA]
gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
gi|348610574|gb|EGY60262.1| DNA polymerase I [Ralstonia sp. 5_2_56FAA]
Length = 937
Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats.
Identities = 150/275 (54%), Positives = 207/275 (75%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y ACIFDAK
Sbjct: 5 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACIFDAK 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL+++GVEADDVIGTLA++A
Sbjct: 65 GKTFRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVVEGVEADDVIGTLAERA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ I+ST DKD+AQLV++ + L+N N+ D + ++FGV PE+IVDY SLIG
Sbjct: 125 -AREGVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVDYLSLIG 183
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L ++ SL+N+I +A IKGV+G+NLR L WLPK +++LT
Sbjct: 184 DTVDNVPGVPKVGPKTAVKWLTEFGSLDNVIAHAGEIKGVVGENLRNTLEWLPKGRELLT 243
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+K DC+L+K + + ++LI +D+ L+ F++Y
Sbjct: 244 VKLDCNLSKEVPTF-DALIDGGEDKSKLVDFFSRY 277
>gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
Length = 913
Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats.
Identities = 151/273 (55%), Positives = 204/273 (74%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R+ D P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRSPDGNPTGALYGMINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L QI IH V+A+GWP+L+I GVEADDVIGTL+ QA
Sbjct: 71 TFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLSTQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K + VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 KRGMNVIVSTGDKDLAQLVSDHVTLINTMTNETLDRAGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA+K L Q++SL+ I+ +A+ IKG +G NLR AL++LP KK++T++
Sbjct: 190 VDNVPGVEKCGPKTAIKWLTQFDSLDGIVAHADEIKGAVGDNLRRALDFLPMAKKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+CD+T +IVSI ESL +P+ + L ++F ++
Sbjct: 250 RNCDMTDHIVSIEESLQSRPESREELREVFTRH 282
>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
Length = 946
Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats.
Identities = 149/275 (54%), Positives = 204/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAK
Sbjct: 7 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAK 66
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A
Sbjct: 67 GKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVIGTLAERA 126
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ ++ST DKD+AQLV++ + L+N +N+ D ++++FGV P KIVDY SLIG
Sbjct: 127 -AREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPGKIVDYLSLIG 185
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L +Y SL+++I A IKGV+G+NLR L+WLPK +++LT
Sbjct: 186 DTVDNVPGVPKVGPKTAVKWLGEYGSLDSVIARAGEIKGVVGENLRNTLDWLPKGRELLT 245
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL + + E+L+ +D L+ F +Y
Sbjct: 246 VKTDCDLATEVPTF-EALVDGGEDRAKLVDFFGRY 279
>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
Length = 959
Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats.
Identities = 150/275 (54%), Positives = 204/275 (74%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAK
Sbjct: 21 QETLLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAK 80
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A
Sbjct: 81 GKTFRDDLYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVIGTLAERA 140
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
T+ ++ ++ST DKD+AQLV++ + L+N +N+ D ++++FGV P KIVDY SLIG
Sbjct: 141 -TREGVRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPGKIVDYLSLIG 199
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTAVK L +Y SL+++I A IKGV+G+NLR L+WLPK +++LT
Sbjct: 200 DTVDNVPGVPKVGPKTAVKWLGEYGSLDSVIARAGEIKGVVGENLRNTLDWLPKGRELLT 259
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL + + +LI +D L+ F +Y
Sbjct: 260 VKTDCDLATEVPTFA-ALIDGGEDRAKLVDFFGRY 293
>gi|421746990|ref|ZP_16184743.1| DNA polymerase I, partial [Cupriavidus necator HPC(L)]
gi|409774428|gb|EKN56051.1| DNA polymerase I, partial [Cupriavidus necator HPC(L)]
Length = 302
Score = 313 bits (801), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 144/273 (52%), Positives = 203/273 (74%), Gaps = 4/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A Y AC+FDAKGK
Sbjct: 7 TLLLVDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAEYSACVFDAKGK 66
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LYP+YK R MP +L QI IH+ V+A+GWPI+++ GVEADDVIG+LA QA T
Sbjct: 67 TFRDALYPAYKEHRPSMPDDLARQIEPIHEAVRALGWPIVVVDGVEADDVIGSLACQA-T 125
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
++ ++ST DKD+AQLV++ + L+N + ++ D ++++FGV PE+IVDY SLIGD
Sbjct: 126 AEGIRTVVSTGDKDLAQLVNDSVTLVNTMSGEVLDPPGVVAKFGVPPERIVDYLSLIGDA 185
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K+GPKTAVK L +Y +L+ I+ NA+ IKGV+G+NLR L WLP+ ++++T+K
Sbjct: 186 VDNVPGVPKVGPKTAVKWLTEYGTLDGIMANADKIKGVVGENLRNTLEWLPRARELVTVK 245
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
DCDL++ I +L +D++ L+ F++Y
Sbjct: 246 IDCDLSEPIPDF-HALRDMGEDKEKLIAFFSRY 277
>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Cupriavidus metallidurans CH34]
Length = 934
Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats.
Identities = 144/273 (52%), Positives = 205/273 (75%), Gaps = 4/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A YIAC+FDAKGK
Sbjct: 7 TLLLVDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAQYIACVFDAKGK 66
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +YP+YK R MP +L QI IH+ V+A+GWPI++++GVEADDVIGTLA QA +
Sbjct: 67 TFRDDMYPAYKEHRPSMPEDLAKQIEPIHEAVRALGWPIVVVEGVEADDVIGTLALQA-S 125
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + ++ST DKD+AQLV++ + L+N + ++ D ++++FGV PE+IVDY SLIGD
Sbjct: 126 QQGVNTVVSTGDKDLAQLVNDTVTLVNTMSGEVLDPPGVVAKFGVPPERIVDYLSLIGDA 185
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K+GPKTAVK L +Y +L++I+ NA IKGV+G+NLR L WLP+ ++++T+K
Sbjct: 186 VDNVPGVPKVGPKTAVKWLTEYGTLDDIMGNAEKIKGVVGENLRNTLEWLPRARELVTVK 245
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
TDCDL+ + ++L +D++ L+ F +Y
Sbjct: 246 TDCDLSGAVADF-QALHDLGEDKEKLIAFFQRY 277
>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
Length = 917
Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 203/273 (74%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 71 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H +KV++ST DKD+AQLV++++ L+N N+I DR +I++FGV PE+I+DY +LIGD
Sbjct: 130 RHGMKVVVSTGDKDLAQLVTDRVTLVNTMTNEILDRDGVIAKFGVPPERIIDYLALIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY+SL+ +I +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI +L + LL +F +Y
Sbjct: 250 TACDLAPHLESIEATLATDGEARDLLRDIFARY 282
>gi|385206452|ref|ZP_10033322.1| DNA polymerase I [Burkholderia sp. Ch1-1]
gi|385186343|gb|EIF35617.1| DNA polymerase I [Burkholderia sp. Ch1-1]
Length = 913
Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats.
Identities = 150/273 (54%), Positives = 202/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ Y YKA R MP +L QI IH V+A+GWP+L+I+GVEADDVIGTL+ +A
Sbjct: 71 TFRDDWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLSTEA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K + VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+I+DY SL+GD
Sbjct: 130 KRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIIDYLSLVGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Q++SL+ I+ +A+ IKG +G NLR AL++LP KK++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGAVGDNLRRALDFLPMAKKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+CDLT +IVSI ESL QP+ L ++F ++
Sbjct: 250 RNCDLTDHIVSIEESLQSQPESRAELREVFTRH 282
>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
Length = 916
Score = 311 bits (798), Expect = 2e-82, Method: Composition-based stats.
Identities = 149/275 (54%), Positives = 206/275 (74%), Gaps = 7/275 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
T+LLVDGSS +YRA++ALPD+RN +N P GA++G + MLR+L+K+Y A Y AC+FDAKGK
Sbjct: 3 TVLLVDGSSYLYRAYHALPDLRNRNNEPTGAIHGVLNMLRRLHKDYHADYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +YP YKA R MP L +QI +H ++A+GWP+LII GVEADDVIGTLA+QAV
Sbjct: 63 TFRDEIYPEYKAHRPSMPMELAVQIEPLHACIRAMGWPMLIIDGVEADDVIGTLARQAV- 121
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ +++ IIST DKD+AQLV + I+L+N +N+I D +++++FGV PE+++DY L+GD
Sbjct: 122 EADMRCIISTGDKDIAQLVDSHISLVNTMSNEILDEASVLAKFGVPPERMLDYLMLVGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
SDN+PGV K+GPKTAVK L QY SL+NII +A+ IKG IG NLR AL+W ++++TIK
Sbjct: 182 SDNVPGVHKVGPKTAVKWLTQYGSLDNIIAHADEIKGAIGDNLRTALDWFDTARQLITIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D DL I L LQP+D + L +L+ + +
Sbjct: 242 CDVDLPIKIT----DLALQPQDTEQLARLYEQLDM 272
>gi|430809178|ref|ZP_19436293.1| DNA polymerase I [Cupriavidus sp. HMR-1]
gi|429498322|gb|EKZ96832.1| DNA polymerase I [Cupriavidus sp. HMR-1]
Length = 934
Score = 311 bits (798), Expect = 2e-82, Method: Composition-based stats.
Identities = 144/273 (52%), Positives = 204/273 (74%), Gaps = 4/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A YIAC+FDAKGK
Sbjct: 7 TLLLVDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAQYIACVFDAKGK 66
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +YP+YK R MP +L QI IH+ V+A+GWPI++++GVEADDVIGTLA QA +
Sbjct: 67 TFRDDMYPAYKEHRPSMPEDLAKQIEPIHEAVRALGWPIVVVEGVEADDVIGTLALQA-S 125
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + ++ST DKD+AQLV++ + L+N + ++ D ++++FGV PE+IVDY SLIGD
Sbjct: 126 QQGVNTVVSTGDKDLAQLVNDTVTLVNTMSGEVLDPPGVVAKFGVPPERIVDYLSLIGDA 185
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K+GPKTAVK L +Y +L+ I+ NA IKGV+G+NLR L WLP+ ++++T+K
Sbjct: 186 VDNVPGVPKVGPKTAVKWLTEYGTLDEIMGNAEKIKGVVGENLRNTLEWLPRARELVTVK 245
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
TDCDL+ + ++L +D++ L+ F +Y
Sbjct: 246 TDCDLSGAVADF-QALHDLGEDKEKLIAFFQRY 277
>gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400]
gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400]
Length = 913
Score = 311 bits (798), Expect = 2e-82, Method: Composition-based stats.
Identities = 150/273 (54%), Positives = 202/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ Y YKA R MP +L QI IH V+A+GWP+L+I+GVEADDVIGTL+ +A
Sbjct: 71 TFRDDWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLSTEA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K + VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+I+DY SL+GD
Sbjct: 130 KRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIIDYLSLVGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Q++SL+ I+ +A+ IKG +G NLR AL++LP KK++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGAVGDNLRRALDFLPMAKKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+CDLT +IVSI ESL QP+ L ++F ++
Sbjct: 250 RNCDLTDHIVSIGESLQSQPESRAELREVFTRH 282
>gi|386865579|ref|YP_006278527.1| DNA polymerase I [Burkholderia pseudomallei 1026b]
gi|418536800|ref|ZP_13102469.1| DNA polymerase I [Burkholderia pseudomallei 1026a]
gi|385351692|gb|EIF58158.1| DNA polymerase I [Burkholderia pseudomallei 1026a]
gi|385662707|gb|AFI70129.1| DNA polymerase I [Burkholderia pseudomallei 1026b]
Length = 923
Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats.
Identities = 150/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
Length = 923
Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats.
Identities = 150/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
Length = 923
Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats.
Identities = 150/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
Length = 913
Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats.
Identities = 149/276 (53%), Positives = 196/276 (71%), Gaps = 3/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M LLLVDGSS +YRA++ALPD+RN + P GA+YG + ML +L K+Y Y+ACIFDA
Sbjct: 1 MNRLLLLVDGSSYLYRAYHALPDLRNAEGEPTGAIYGFLNMLHRLEKDYPTAYVACIFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FRN LY YKA R MP +L Q IH++VK +GWPIL I+G+EADDVIGTL
Sbjct: 61 KGKTFRNDLYQEYKANRSAMPDDLARQTGPIHELVKMLGWPILSIEGIEADDVIGTLVSI 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A K ++ST DKDM+QLV + + L+N NN+I D ++ +FGV P++IVDY SL+
Sbjct: 121 AKRK-GFDTVVSTGDKDMSQLVRDCVTLVNTMNNEIMDEEGVMRKFGVPPDRIVDYLSLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD SDN+PGV K+GPKTAVK L QY SL+ II NA NIKG +G NLR +L WLP+ ++++
Sbjct: 180 GDTSDNIPGVNKVGPKTAVKWLTQYGSLDAIIENAVNIKGTVGDNLRESLEWLPQARQLI 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
TI+TDCDL+ SI E+L+ +D L + + +Y
Sbjct: 240 TIRTDCDLSGQFKSIEETLVKNSEDVSGLRKAYERY 275
>gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M]
gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M]
Length = 913
Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 201/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L QI IH V+A+GWP+L+I GVEADDVIGTL+ +A
Sbjct: 71 TFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLSTEA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K + VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 KRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA+K L QY SL+ I+ +A+ IKG +G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTALKWLTQYESLDGIVAHADEIKGAVGDNLRRALDFLPMARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+CDLT++I SI E+L +P+ + L +F ++
Sbjct: 250 RNCDLTEHIASIEENLQSRPESREELRDVFTRH 282
>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
Length = 923
Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|418544112|ref|ZP_13109423.1| DNA polymerase I [Burkholderia pseudomallei 1258a]
gi|418550953|ref|ZP_13115899.1| DNA polymerase I [Burkholderia pseudomallei 1258b]
gi|385350205|gb|EIF56755.1| DNA polymerase I [Burkholderia pseudomallei 1258b]
gi|385350587|gb|EIF57116.1| DNA polymerase I [Burkholderia pseudomallei 1258a]
Length = 923
Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
Length = 923
Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
Length = 923
Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
Length = 923
Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
gi|418397024|ref|ZP_12970773.1| DNA polymerase I [Burkholderia pseudomallei 354a]
gi|418556619|ref|ZP_13121243.1| DNA polymerase I [Burkholderia pseudomallei 354e]
gi|385366784|gb|EIF72386.1| DNA polymerase I [Burkholderia pseudomallei 354e]
gi|385369563|gb|EIF74880.1| DNA polymerase I [Burkholderia pseudomallei 354a]
Length = 923
Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
Length = 923
Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
dolosa AUO158]
gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
dolosa AUO158]
Length = 736
Score = 309 bits (792), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 145/273 (53%), Positives = 196/273 (71%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 14 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 73
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L++ GVEADDVIGTLA++A
Sbjct: 74 TFRDELYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAREA-E 132
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + VI+ST DKD+AQLV+ + L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 133 RRGMNVIVSTGDKDLAQLVTEHVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 192
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY +L+ +I +A IKGV+G NLR AL++LP +K++T+
Sbjct: 193 VDNVPGVEKCGPKTAVKWLSQYGTLDGVIEHAAEIKGVVGDNLRRALDFLPLGRKLVTVD 252
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + LL +F +Y
Sbjct: 253 TACDLAPHLESIDASLKTDGEARDLLRDIFARY 285
>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
Length = 913
Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L QI IH V+A+GWP+L+I GVEADDVIGTL+ +A
Sbjct: 71 TFRDDWYPEYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLSTEA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K + VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 KRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA+K L QY SL+ I+ +A IKG +G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTALKWLTQYESLDGIVAHAGEIKGAVGDNLRRALDFLPMARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+CDLT++I SI E+L +P+ + L +F ++
Sbjct: 250 RNCDLTEHITSIEENLQSRPESREELRDVFTRH 282
>gi|339482762|ref|YP_004694548.1| DNA polymerase I [Nitrosomonas sp. Is79A3]
gi|338804907|gb|AEJ01149.1| DNA polymerase I [Nitrosomonas sp. Is79A3]
Length = 915
Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats.
Identities = 151/275 (54%), Positives = 205/275 (74%), Gaps = 7/275 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+ALPD+RN +N P GA++G + MLR+L+K+Y A Y AC+FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHALPDLRNRNNEPTGAIHGVLNMLRRLHKDYPADYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LYP+YKA R MP++L +QI +H ++A+GWP+LII GVEADDVIGTLAKQAV
Sbjct: 63 TFRDELYPAYKAHRPAMPHDLAVQIEPLHACIRAMGWPMLIIDGVEADDVIGTLAKQAV- 121
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ N++ IIST DKD+AQLV+ I L+N +N++ D +++ +FGV+PE+I+DY LIGD
Sbjct: 122 EENMQCIISTGDKDIAQLVNANITLVNTMSNEVLDEASVVDKFGVTPERILDYLMLIGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
+DN+PGV K+GPKTAVK L QY SL+NII +A+ KG IG NLR AL+W ++++TIK
Sbjct: 182 ADNVPGVHKVGPKTAVKWLTQYGSLDNIIAHADEFKGAIGDNLRKALDWFDTARQLITIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D DL I L +P+D L+ L+ + +
Sbjct: 242 CDVDLPVRIT----DLAPKPQDTGQLILLYEQLDM 272
>gi|415917039|ref|ZP_11554079.1| DNA polymerase I, partial [Herbaspirillum frisingense GSF30]
gi|407761405|gb|EKF70475.1| DNA polymerase I, partial [Herbaspirillum frisingense GSF30]
Length = 263
Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 143/253 (56%), Positives = 192/253 (75%), Gaps = 3/253 (1%)
Query: 24 IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYN 83
+RN + P GALYG I MLR+L +Y A+Y+AC+FDAKGK FR+ LYP YKATRK MP +
Sbjct: 1 MRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDAKGKTFRDDLYPDYKATRKSMPED 60
Query: 84 LILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVS 143
L LQI IH V+A+GWPIL+++G+EADDVIGTL+ QA T L IIST DKDMAQLV
Sbjct: 61 LALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQA-TAAGLDTIISTGDKDMAQLVD 119
Query: 144 NKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLN 201
+ L+N +N++ D + ++FGV P +IVDY SLIGD DN+PGV+K GPKTAVK L
Sbjct: 120 EHVTLVNTMSNEVLDIAGVTAKFGVPPNRIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLT 179
Query: 202 QYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQP 261
Y+SL+ ++ NA+ I GV+G+NLR AL+WLP+ + ++T+KTDCDL+ ++ SI ESL +QP
Sbjct: 180 SYDSLDGVMANADKISGVVGENLRRALDWLPQGRVLVTVKTDCDLSAHMKSILESLTMQP 239
Query: 262 KDEKLLMQLFNKY 274
+D+++L LF +Y
Sbjct: 240 QDKEVLKDLFTRY 252
>gi|390577026|ref|ZP_10257066.1| DNA polymerase I [Burkholderia terrae BS001]
gi|389931004|gb|EIM93092.1| DNA polymerase I [Burkholderia terrae BS001]
Length = 913
Score = 309 bits (791), Expect = 9e-82, Method: Composition-based stats.
Identities = 147/272 (54%), Positives = 199/272 (73%), Gaps = 3/272 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPDGAPTGALYGIINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L QI IH V+++GWP+L+I+GVEADDVIGTLAK+A
Sbjct: 71 TFRDDWYPQYKANRASMPDDLSKQIEPIHVAVRSLGWPLLMIEGVEADDVIGTLAKRAEA 130
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + VI+ST DKD+AQLV++ + LIN N+ DR ++ +FGV PE+IVDY SLIGD
Sbjct: 131 R-GMNVIVSTGDKDLAQLVTDHVTLINTMTNEKLDREGVVGKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA+K L Q+ +L+ I+ +A+ IKG +G NLR AL++LP +K++T+
Sbjct: 190 VDNVPGVEKCGPKTAIKWLTQFETLDGIVAHADEIKGAVGDNLRRALDFLPMARKLVTVD 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
TDCDLT+ I S E+L +P+ + L +F +
Sbjct: 250 TDCDLTEQINSFEETLATRPESREELRDVFTR 281
>gi|420247667|ref|ZP_14751062.1| DNA polymerase I [Burkholderia sp. BT03]
gi|398070561|gb|EJL61855.1| DNA polymerase I [Burkholderia sp. BT03]
Length = 913
Score = 309 bits (791), Expect = 9e-82, Method: Composition-based stats.
Identities = 147/272 (54%), Positives = 199/272 (73%), Gaps = 3/272 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPDGAPTGALYGIINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L QI IH V+++GWP+L+I+GVEADDVIGTLAK+A
Sbjct: 71 TFRDDWYPEYKANRASMPDDLSKQIEPIHVAVRSLGWPLLMIEGVEADDVIGTLAKRAEA 130
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + VI+ST DKD+AQLV++ + LIN N+ DR ++ +FGV PE+IVDY SLIGD
Sbjct: 131 R-GMNVIVSTGDKDLAQLVTDHVTLINTMTNEKLDREGVVGKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA+K L Q+ +L+ I+ +A+ IKG +G NLR AL++LP +K++T+
Sbjct: 190 VDNVPGVEKCGPKTAIKWLTQFETLDGIVAHADEIKGAVGDNLRRALDFLPMARKLVTVD 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
TDCDLT+ I S E+L +P+ + L +F +
Sbjct: 250 TDCDLTEQINSFEETLATRPESREELRDVFTR 281
>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
Length = 915
Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats.
Identities = 145/273 (53%), Positives = 202/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGIINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L QI IH V+++GWP+L+I GVEADDVIGTLAK+A
Sbjct: 71 TFRDDWYPQYKANRPSMPDDLARQIEPIHVAVRSLGWPLLMIDGVEADDVIGTLAKRAEA 130
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + VI+ST DKD+AQLV++ + LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 131 R-GMNVIVSTGDKDLAQLVTDHVTLINTMTNEKLDREGVVAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA+K L Q+ +L+ I+ +A+ IKG +G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAIKWLTQFGTLDGIVAHADEIKGAVGDNLRRALHFLPMARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
TDCDLT+++ S ++L +P+ + L +F ++
Sbjct: 250 TDCDLTEHVTSFADTLPTRPESREELRDVFTRH 282
>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
Length = 923
Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLMQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|444361867|ref|ZP_21162445.1| DNA-directed DNA polymerase [Burkholderia cenocepacia BC7]
gi|444372706|ref|ZP_21172139.1| DNA-directed DNA polymerase [Burkholderia cenocepacia K56-2Valvano]
gi|443592954|gb|ELT61718.1| DNA-directed DNA polymerase [Burkholderia cenocepacia K56-2Valvano]
gi|443597982|gb|ELT66382.1| DNA-directed DNA polymerase [Burkholderia cenocepacia BC7]
Length = 920
Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 201/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 14 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 73
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 74 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 132
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV+ ++ L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 133 RHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 192
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY SL+ +I +A +IKGV+G NLR AL++LP +K++T+
Sbjct: 193 VDNVPGVEKCGPKTAVKWLSQYESLDGVIAHAADIKGVVGDNLRRALDFLPLGRKLVTVD 252
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + +LL +F +Y
Sbjct: 253 TSCDLAPHLESIEASLKTDGEARELLRDIFARY 285
>gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315]
gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315]
Length = 917
Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 201/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 71 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV+ ++ L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 130 RHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY SL+ +I +A +IKGV+G NLR AL++LP +K++T+
Sbjct: 190 VDNVPGVEKCGPKTAVKWLSQYESLDGVIAHAADIKGVVGDNLRRALDFLPLGRKLVTVD 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + +LL +F +Y
Sbjct: 250 TSCDLAPHLESIEASLKTDGEARELLRDIFARY 282
>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
Length = 917
Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 201/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 71 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLVS+++ L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 130 RHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP + ++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRTLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + LL +F +Y
Sbjct: 250 TACDLAPHLESIEASLKTDGEARHLLRDIFARY 282
>gi|393775970|ref|ZP_10364267.1| DNA polymerase I [Ralstonia sp. PBA]
gi|392716913|gb|EIZ04490.1| DNA polymerase I [Ralstonia sp. PBA]
Length = 930
Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats.
Identities = 144/274 (52%), Positives = 202/274 (73%), Gaps = 8/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
LLLVDGSS +YRA++ALPD+RN + FP GA+YG I MLRKL +Y A Y AC+FDAKGK
Sbjct: 2 LLLVDGSSYLYRAYHALPDLRNPEGFPTGAIYGMINMLRKLRNDYPAQYSACVFDAKGKT 61
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YK R MP +L QI IH+ V+A+GWPIL+++GVEADDVIGTL +A T+
Sbjct: 62 FRDDLYPEYKEHRAPMPEDLARQIEPIHEAVRALGWPILMVEGVEADDVIGTLTHRATTQ 121
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++ ++ST DKD+AQLV+ + L+N + ++ D + ++FGV PE+I+DY +LIGD
Sbjct: 122 -GIRSVVSTGDKDLAQLVNADVTLVNTMSGEVLDPAGVQAKFGVPPERIIDYLALIGDTV 180
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTA+K L +Y +L+NII NA IKGV+G+NLR L+WLPK ++++T+K
Sbjct: 181 DNIPGVPKVGPKTALKWLTEYGTLDNIIANAGAIKGVVGENLRNTLDWLPKGRELITVKL 240
Query: 243 DCDLTKNIVSIPESLIL--QPKDEKLLMQLFNKY 274
DCDL+ +P+ L P++ + L++ F +Y
Sbjct: 241 DCDLS---AEVPDFTALHDHPENAQALIEFFTRY 271
>gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
Length = 917
Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 201/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 71 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLVS+++ L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 130 RHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP + ++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRTLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + LL +F +Y
Sbjct: 250 TACDLAPHLESIEASLRTDGEARDLLRDIFARY 282
>gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
gi|424905512|ref|ZP_18329015.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
gi|390928405|gb|EIP85809.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
Length = 926
Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 199/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP ++++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARQLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L +F KY
Sbjct: 250 TACELAPHVESFDASLATDGEGRDALRDIFAKY 282
>gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002]
gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002]
Length = 913
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 198/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R + P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPEGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L QI IH V+A+GWP+L+I VEADDVIGTL +A
Sbjct: 71 TFRDDWYPEYKANRPSMPEDLARQIEPIHVAVRALGWPLLMIDRVEADDVIGTLCTEA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K + V++ST DKD+AQLVSN++ L+N N+ DR ++++FGV PE+I+DY SLIGD
Sbjct: 130 KLGMNVVVSTGDKDLAQLVSNRVTLVNTMTNETLDRDGVVAKFGVPPERIIDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ I+ +A+ IKG +G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLMQYESLDGIVEHASEIKGAVGDNLRRALDFLPMARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
CDLT +IVSI ESL P+ + L LF ++
Sbjct: 250 RHCDLTGHIVSIEESLPSLPESREELRDLFTRH 282
>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
Length = 941
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 143/273 (52%), Positives = 204/273 (74%), Gaps = 4/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A Y AC+FDAKGK
Sbjct: 7 TLLLVDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAEYSACVFDAKGK 66
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +YP+YK R MP +L QI IH+ V+A+GWPI++++GVEADDVIGTLA+QA
Sbjct: 67 TFRDEMYPAYKEHRPSMPEDLARQIEPIHEAVRALGWPIVVVEGVEADDVIGTLARQA-A 125
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ ++ ++ST DKD+AQLV++++ L+N + ++ D + ++FGV PE+IVDY SLIGD
Sbjct: 126 EQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPAGVNAKFGVPPERIVDYLSLIGDA 185
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K+GPKTAVK L ++ +L+NI+ A IKGV+G+NLR L+WLPK ++++T+K
Sbjct: 186 VDNVPGVPKVGPKTAVKWLTEHGTLDNIMAGAAGIKGVVGENLRNTLDWLPKARELVTVK 245
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
TDCDL+ + +L +D++ L+ F +Y
Sbjct: 246 TDCDLSAAVADF-HALREIGEDKEKLIAFFTRY 277
>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
Length = 917
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L++ GVEADDVIGTLA++A
Sbjct: 71 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAREA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLVS+++ L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 130 RHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP + ++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRTLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + LL +F +Y
Sbjct: 250 TACDLAPHLESIEASLKTDGEARDLLRDIFARY 282
>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
Length = 917
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L++ GVEADDVIGTLA++A
Sbjct: 71 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAREA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLVS+++ L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 130 RHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP + ++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRTLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + LL +F +Y
Sbjct: 250 TACDLAPHLESIEASLKTDGEARDLLRDIFARY 282
>gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184]
gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184]
Length = 920
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 146/273 (53%), Positives = 201/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 14 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 73
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 74 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 132
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV+ ++ L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 133 RHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 192
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY++L+ +I +A +IKGV+G NLR AL++LP ++++T+
Sbjct: 193 VDNVPGVEKCGPKTAVKWLTQYDTLDGVIEHAADIKGVVGDNLRRALDFLPLGRQLVTVD 252
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDLT ++ SI SL + LL +F +Y
Sbjct: 253 TSCDLTPHLESIEASLKSDGEARDLLRDIFARY 285
>gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
Length = 917
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 146/273 (53%), Positives = 201/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 71 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV+ ++ L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 130 RHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY++L+ +I +A +IKGV+G NLR AL++LP ++++T+
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYDTLDGVIEHAADIKGVVGDNLRRALDFLPLGRQLVTVD 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDLT ++ SI SL + LL +F +Y
Sbjct: 250 TSCDLTPHLESIEASLKSDGEARDLLRDIFARY 282
>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
Length = 913
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 149/273 (54%), Positives = 198/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L QI IH V+A+GWP+L+I GVEADDVIGTL+ +A
Sbjct: 71 TFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLSTEA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K + VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 KRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA+K L QY SL+ I+ +A IKG +G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTALKWLTQYESLDGIVAHAGEIKGAVGDNLRRALDFLPMARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
CDLT +I SI E+L +P+ + L +F ++
Sbjct: 250 RHCDLTDHIASIEENLQSRPESREELRDVFTRH 282
>gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264]
gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264]
gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264]
Length = 926
Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats.
Identities = 148/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAK+A
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAKRA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F+ Y
Sbjct: 250 TACELAPHVESFDASLATDGEGRDALREIFSTY 282
>gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4]
Length = 926
Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats.
Identities = 148/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAK+A
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAKRA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F+ Y
Sbjct: 250 TACELAPHVESFDASLATDGEGRDALREIFSTY 282
>gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH]
Length = 926
Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats.
Identities = 148/273 (54%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAK+A
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAKRA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F+ Y
Sbjct: 250 TACELAPHVESFDASLATDGEGRDALREIFSTY 282
>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
Length = 926
Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats.
Identities = 148/273 (54%), Positives = 199/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKG +G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGGVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160]
gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160]
Length = 913
Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats.
Identities = 144/273 (52%), Positives = 202/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R + P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPEGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L QI IH V+A+GWP+L+I+ VEADDVIGTL +A
Sbjct: 71 TFRDDWYPEYKANRPSMPEDLARQIEPIHVAVRALGWPLLMIERVEADDVIGTLCTEA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K + V++ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+I+DY SL+GD
Sbjct: 130 KLGMNVVVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVVAKFGVPPERIIDYLSLVGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY+SL+ I+ +A+ IKG +G+NLR AL+++P +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYDSLDGIVEHASEIKGAVGENLRRALDFMPMARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
CDL +++VSI ESL +P+ + L LF ++
Sbjct: 250 RHCDLNEHLVSIEESLSSRPESREELRDLFTRH 282
>gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1]
gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1]
Length = 917
Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats.
Identities = 148/273 (54%), Positives = 199/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K RA Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVRAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ L+ YKA R MP +L LQI IH+ V+A+GWP+L+I+GVEADDVIGTLA+ A
Sbjct: 71 TFRDDLFVDYKANRPSMPPDLALQIEPIHEAVRALGWPLLMIEGVEADDVIGTLARAAEA 130
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ +KV+IST DKD+AQLV++ + L+N N++ DR +I++FGV PE+IVDY SLIGD
Sbjct: 131 R-GMKVVISTGDKDLAQLVTSHVTLVNTMTNELLDREGVIAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY +L+ I+ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYETLDGIVEHAAEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L + SI SL + L+ +F Y
Sbjct: 250 TACELKPQVESIEASLATGAESRAALLPIFETY 282
>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
Length = 923
Score = 306 bits (785), Expect = 5e-81, Method: Composition-based stats.
Identities = 148/273 (54%), Positives = 199/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA
Sbjct: 71 TFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 QRGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ S SL + L ++F KY
Sbjct: 250 TGCELAPHVESFDASLATDGEGRDALREIFAKY 282
>gi|402569615|ref|YP_006618959.1| DNA polymerase I [Burkholderia cepacia GG4]
gi|402250812|gb|AFQ51265.1| DNA polymerase I [Burkholderia cepacia GG4]
Length = 917
Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats.
Identities = 146/273 (53%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 71 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + VI+ST DKD+AQLVS+ + L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 130 RHGMNVIVSTGDKDLAQLVSDHVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP + ++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRTLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + L+ +F +Y
Sbjct: 250 TACDLAPHLESIEASLKTDGEARDLMRDIFARY 282
>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
Length = 919
Score = 306 bits (784), Expect = 7e-81, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 198/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVTAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ L+ YKA R MP +L LQI IHQ V+A+GWP+L+I+GVEADDVIGTLA A
Sbjct: 71 TFRDDLFADYKANRPSMPTDLALQIEPIHQAVRALGWPLLMIEGVEADDVIGTLA-HAAE 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+KV+IST DKD+AQLV+ ++ L+N +N++ DR +I++FGV PE+IVDY SLIGD
Sbjct: 130 ARGMKVVISTGDKDLAQLVTERVTLVNTMSNELLDREGVIAKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY +L+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYETLDGVVEHAAEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L + SI SL + + L+ +F Y
Sbjct: 250 TACELKPQVESIEASLATLGESREALLPIFENY 282
>gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383]
gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383]
Length = 917
Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats.
Identities = 145/273 (53%), Positives = 201/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 71 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H + V++ST DKD+AQLV++ + L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 130 RHGMNVVVSTGDKDLAQLVTDHVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY+SL+ +I +A +IKGV+G NLR AL++LP + ++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLAQYDSLDGVIEHAGDIKGVVGDNLRRALDFLPLGRTLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDLT ++ SI SL + L+ +F +Y
Sbjct: 250 TACDLTPHLESIEASLKSDGEARDLMRDIFARY 282
>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
exonuclease [Cupriavidus taiwanensis LMG 19424]
Length = 939
Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats.
Identities = 141/273 (51%), Positives = 203/273 (74%), Gaps = 4/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A Y AC+FDAKGK
Sbjct: 7 TLLLVDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAEYSACVFDAKGK 66
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LYP+YK R MP +L QI IH+ V+A+GWPI+++ GVEADDVIGTL++QA+
Sbjct: 67 TFRDDLYPAYKEHRPSMPEDLARQIEPIHEAVRALGWPIVVVDGVEADDVIGTLSRQAM- 125
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ ++ ++ST DKD+AQLV+ + L+N + ++ D ++++FGV PE+I+DY SLIGD
Sbjct: 126 EQGVRTVVSTGDKDLAQLVNEHVTLVNTMSGEVLDPPGVLAKFGVPPERIIDYLSLIGDA 185
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K+GPKTAVK L ++ SL+ ++ A+ IKGV+G+NLR L WLP ++++T+K
Sbjct: 186 VDNVPGVPKVGPKTAVKWLAEHGSLDGVMAAASGIKGVVGENLRNTLEWLPMARRLVTVK 245
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
TDCDL+K++ +L +D++ L+ F +Y
Sbjct: 246 TDCDLSKSVADF-HALRETGEDKEQLVAFFQRY 277
>gi|421477008|ref|ZP_15924861.1| DNA-directed DNA polymerase [Burkholderia multivorans CF2]
gi|400227323|gb|EJO57330.1| DNA-directed DNA polymerase [Burkholderia multivorans CF2]
Length = 920
Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 200/273 (73%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 14 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 73
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 74 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 132
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + VI+ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+IVDY +LIGD
Sbjct: 133 RRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALIGDT 192
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY SL+ +I +A IKGV+G NLR AL++LP +K++T++
Sbjct: 193 VDNVPGVEKCGPKTAVKWLSQYGSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVE 252
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + LL +F +Y
Sbjct: 253 TACDLAPHLESIDASLKSDGEARDLLRDIFARY 285
>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
Length = 938
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 141/273 (51%), Positives = 203/273 (74%), Gaps = 4/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A Y AC+FDAKGK
Sbjct: 7 TLLLVDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAEYSACVFDAKGK 66
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +YP+YK R MP +L QI IH+ V+A+GWPI+++ GVEADDVIGTL++QA T
Sbjct: 67 TFRDDMYPAYKEHRPSMPEDLARQIEPIHEAVRAMGWPIVVVDGVEADDVIGTLSRQA-T 125
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ ++ ++ST DKD+AQLV++++ L+N + ++ D ++++FGV PE+I+DY SLIGD
Sbjct: 126 EQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPPGVVAKFGVPPERIIDYLSLIGDA 185
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K+GPKTAVK L ++ SL+ +I A IKGV+G+NLR L+WLP ++++T+K
Sbjct: 186 VDNVPGVPKVGPKTAVKWLAEHGSLDGVIAAAPGIKGVVGENLRNTLDWLPMARQLVTVK 245
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
TDCDL+ + +L +D+ L+ F++Y
Sbjct: 246 TDCDLSAAVADF-HALRETGEDKDKLVAFFSRY 277
>gi|421468295|ref|ZP_15916847.1| DNA-directed DNA polymerase [Burkholderia multivorans ATCC BAA-247]
gi|400232150|gb|EJO61786.1| DNA-directed DNA polymerase [Burkholderia multivorans ATCC BAA-247]
Length = 920
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 199/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 14 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 73
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 74 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 132
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + VI+ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+IVDY +LIGD
Sbjct: 133 RRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALIGDT 192
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ +I +A IKGV+G NLR AL++LP +K++T++
Sbjct: 193 VDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVE 252
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + LL +F +Y
Sbjct: 253 TACDLAPHLESIDASLKSDGEARDLLRDIFARY 285
>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
Length = 920
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 199/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 14 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 73
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 74 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 132
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + VI+ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+IVDY +LIGD
Sbjct: 133 RRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALIGDT 192
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ +I +A IKGV+G NLR AL++LP +K++T++
Sbjct: 193 VDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVE 252
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + LL +F +Y
Sbjct: 253 TACDLAPHLESIDASLKSDGEARDLLRDIFARY 285
>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
Length = 917
Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 199/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 71 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + VI+ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+IVDY +LIGD
Sbjct: 130 RRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ +I +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + LL +F +Y
Sbjct: 250 TACDLAPHLESIDASLKSDGEARDLLRDIFARY 282
>gi|421484077|ref|ZP_15931649.1| DNA polymerase I [Achromobacter piechaudii HLE]
gi|400197784|gb|EJO30748.1| DNA polymerase I [Achromobacter piechaudii HLE]
Length = 905
Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats.
Identities = 143/276 (51%), Positives = 202/276 (73%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL +++A Y ACIFDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDHKAEYAACIFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ LYP YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADDVIGTLAK+
Sbjct: 61 RGKTFRDDLYPEYKSHRPPMPEDLAEQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAKR 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A +H++ I+ST DKD+AQLV++ + L+N ++ D +I++FGV P++IVDY L+
Sbjct: 121 A-AEHDVHTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEPGVINKFGVPPDRIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L ++ S++ ++ A+ IKGV G NLR A+ P +++L
Sbjct: 180 GDTVDNVPGVTKVGPKTAVKWLTEFGSIDKLVEGADGIKGVAGSNLREAIPNFPLTRQLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT ++ S+ + L + +DE L +L+ +Y
Sbjct: 240 TVKYDCDLTGHVESV-DDLTPRERDEATLTELYERY 274
>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
Length = 920
Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 199/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 14 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 73
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 74 TFRDELYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 132
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + VI+ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+IVDY +LIGD
Sbjct: 133 RRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALIGDT 192
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L QY SL+ +I +A IKGV+G NLR AL++LP +K++T++
Sbjct: 193 VDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVE 252
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + LL +F +Y
Sbjct: 253 TACDLAPHLESIDASLKSDGEARDLLRDIFARY 285
>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
Length = 905
Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats.
Identities = 143/276 (51%), Positives = 201/276 (72%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL +++A Y ACIFDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDHKAEYAACIFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ LYP YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADDVIGTLAK+
Sbjct: 61 RGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAKR 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A +H++ I+ST DKD+AQLV++ + L+N ++ D ++++FGV P++IVDY L+
Sbjct: 121 A-AEHDVHTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEPGVVNKFGVPPDRIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L ++ S++ +I A IKGV G NLR A+ P +++L
Sbjct: 180 GDTVDNVPGVTKVGPKTAVKWLTEFGSIDKLIEGAETIKGVAGNNLREAIPNFPLTRQLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT ++ S+ + LI + +D L +L+ +Y
Sbjct: 240 TVKYDCDLTGHVESV-DDLIPRERDTATLTELYERY 274
>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
Length = 905
Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats.
Identities = 141/276 (51%), Positives = 201/276 (72%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL +++A Y ACIFDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDHKAEYAACIFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ LYP YK+ R MP +L QI IH V+A+GWP+L I+GVEADDVIGTLAK+
Sbjct: 61 RGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHSAVRALGWPVLAIEGVEADDVIGTLAKR 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A +H++ I+ST DKD+AQLV++ + L+N ++ D ++++FGV P++IVDY L+
Sbjct: 121 A-AEHDVYTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEAGVVNKFGVPPDRIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L ++ S++ ++ A +IKGV G NLR A+ P +++L
Sbjct: 180 GDAVDNVPGVTKVGPKTAVKWLTEFGSIDKLVEGAEDIKGVAGSNLREAIPNFPLTRQLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDL ++ ++ + L +P+DE L +L+ +Y
Sbjct: 240 TVKYDCDLAGHVDAV-DDLTPRPRDEATLTELYERY 274
>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
Length = 917
Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats.
Identities = 146/273 (53%), Positives = 199/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A
Sbjct: 71 TFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + VI+ST DKD+AQLV+ ++ L+N N+ DR +I++FGV PE+I+DY +LIGD
Sbjct: 130 QRGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP +K++T+
Sbjct: 190 VDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVD 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T CDL ++ SI SL + LL +F +Y
Sbjct: 250 TACDLAPHLESIEASLKTDGEARDLLRDIFARY 282
>gi|456064031|ref|YP_007503001.1| DNA polymerase I [beta proteobacterium CB]
gi|455441328|gb|AGG34266.1| DNA polymerase I [beta proteobacterium CB]
Length = 947
Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats.
Identities = 144/275 (52%), Positives = 203/275 (73%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
++ LLLVDGSS +YRAF+A+PD+RN P GA+YG + M+R+ +A +IAC+FDAK
Sbjct: 8 KHRLLLVDGSSYLYRAFHAMPDLRNGAGDPTGAIYGMVNMMRRARSELKADHIACVFDAK 67
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L+ QI IH MVKA+GWP+L++ GVEADDVIGTLA QA
Sbjct: 68 GKTFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKALGWPVLMVSGVEADDVIGTLACQA 127
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
T+ + IIST DKD+AQLV++ + LIN N+ D +I++FGV PE+IVDY S+IG
Sbjct: 128 -TQAGWETIISTGDKDLAQLVNSSVTLINTMTNEKLDIDGVIAKFGVPPERIVDYLSIIG 186
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K GPKTA K L ++ L+N++ NA+ +KGV+G+NLR +L WLP+ ++++T
Sbjct: 187 DAVDNVPGVPKAGPKTANKWLAEFGDLDNLMANADQVKGVVGENLRNSLQWLPQARQLIT 246
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL+ ++ + + L +P+D LL +LF +Y
Sbjct: 247 VKTDCDLSPHLPGL-DDLHAKPEDAPLLRELFERY 280
>gi|359798525|ref|ZP_09301096.1| DNA polymerase I [Achromobacter arsenitoxydans SY8]
gi|359363347|gb|EHK65073.1| DNA polymerase I [Achromobacter arsenitoxydans SY8]
Length = 905
Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats.
Identities = 140/276 (50%), Positives = 202/276 (73%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL +++A Y ACIFDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDHKAEYAACIFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ LYP YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADDVIGTLA++
Sbjct: 61 RGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAQR 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A +H++ I+ST DKD+AQLV++ + L+N + ++ D ++++FGV P++IVDY L+
Sbjct: 121 A-AQHDVHTIVSTGDKDLAQLVNSHVTLVNTMSGEVLDEPGVVNKFGVPPDRIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTA K + ++ S++ +I A+ IKGV G NLR A+ P +++L
Sbjct: 180 GDTVDNVPGVTKVGPKTAAKWITEFGSIDKLIEGADGIKGVAGNNLREAIPNFPLTRQLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT ++ + E L +P+D+ L +L+ +Y
Sbjct: 240 TVKCDCDLTGHVDGV-EDLTPRPRDDATLTELYERY 274
>gi|413965133|ref|ZP_11404359.1| DNA polymerase I [Burkholderia sp. SJ98]
gi|413927807|gb|EKS67096.1| DNA polymerase I [Burkholderia sp. SJ98]
Length = 912
Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats.
Identities = 147/273 (53%), Positives = 197/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GALYG I MLR+L + A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRLRREINAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ Y YKA R MP +L QI IH V+A+GWP+++I+ VEADDVIGTLA +A
Sbjct: 71 TFRDDWYADYKANRPSMPEDLAKQIEPIHVAVRALGWPLVMIERVEADDVIGTLAVEA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K +KVI+ST DKD+AQLV++ + LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 KRGMKVIVSTGDKDLAQLVTDHVTLINTMTNETLDRAGVLTKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA+K L QY +L+ I+ +AN IKG +G NLR AL++LP +K++T+
Sbjct: 190 VDNVPGVEKCGPKTAIKWLTQYETLDGIVEHANEIKGAVGDNLRKALDFLPMARKLVTVH 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+CDLT I SI +L +P+ L +F ++
Sbjct: 250 TECDLTSQIESIDATLQSRPESRDELRDVFLRH 282
>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
Length = 923
Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats.
Identities = 148/273 (54%), Positives = 198/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAK+A
Sbjct: 71 TFRDDLYAEYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAKEA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ +KVI+ST DKD+AQLV+ + LIN N+ DR ++++FGV PE IVDY SLIGD
Sbjct: 130 RRGMKVIVSTGDKDLAQLVTGHVTLINTMTNEALDRDGVLAKFGVPPELIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY +L+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLSQYGTLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ SI SL + L +F+ Y
Sbjct: 250 TACELAPHVESIESSLATDGEGRDALRDIFSTY 282
>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
Length = 923
Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats.
Identities = 148/273 (54%), Positives = 198/273 (72%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAK+A
Sbjct: 71 TFRDDLYAEYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAKEA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ +KVI+ST DKD+AQLV+ + LIN N+ DR ++++FGV PE IVDY SLIGD
Sbjct: 130 RRGMKVIVSTGDKDLAQLVTGHVTLINTMTNEALDRDGVLAKFGVPPELIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L+QY +L+ ++ +A IKGV+G NLR AL++LP +K++T++
Sbjct: 190 VDNVPGVEKCGPKTAVKWLSQYGTLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVE 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T C+L ++ SI SL + L +F+ Y
Sbjct: 250 TACELAPHVESIESSLATDGEGRDALRDIFSTY 282
>gi|339326741|ref|YP_004686434.1| DNA polymerase I [Cupriavidus necator N-1]
gi|338166898|gb|AEI77953.1| DNA polymerase I [Cupriavidus necator N-1]
Length = 938
Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats.
Identities = 140/273 (51%), Positives = 203/273 (74%), Gaps = 4/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A Y AC+FDAKGK
Sbjct: 7 TLLLVDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAEYSACVFDAKGK 66
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +YP+YK R MP +L QI IH+ V+A+GWPI+++ GVEADDVIGTL++QA T
Sbjct: 67 TFRDDMYPAYKEHRPSMPEDLARQIEPIHEAVRAMGWPIVVVDGVEADDVIGTLSRQA-T 125
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ ++ ++ST DKD+AQLV++++ L+N + ++ D ++++FGV PE+I+DY SLIGD
Sbjct: 126 EQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPPGVVAKFGVPPERIIDYLSLIGDA 185
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K+GPKTAVK L ++ SL+ ++ A IKGV+G+NLR L+WLP ++++T+K
Sbjct: 186 VDNVPGVPKVGPKTAVKWLAEHGSLDGVMAAAPGIKGVVGENLRNTLDWLPMARQLVTVK 245
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
TDCDL+ + +L +D+ L+ F++Y
Sbjct: 246 TDCDLSAAVADF-HALREIGEDKDKLVAFFSRY 277
>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
Length = 914
Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats.
Identities = 146/276 (52%), Positives = 199/276 (72%), Gaps = 3/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M LLLVDGSS +YRA++ALPD+RN P GA+YG + MLR+L K+Y Y ACIFDA
Sbjct: 1 MNKLLLLVDGSSYLYRAYHALPDLRNSAGEPTGAIYGFLNMLRRLQKDYPTAYRACIFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FRN LY YKA R MP +L+ Q I ++V +GWPIL ++GVEADDVIGTLA +
Sbjct: 61 KGKTFRNDLYQEYKANRAAMPDDLVEQTGHILELVDMLGWPILQVEGVEADDVIGTLAVK 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + I+ST DKDM+QLV +K+ L+N NN++ DR +I +FGV PE+IVDY SL+
Sbjct: 121 A-HEDGFDTIVSTGDKDMSQLVDDKVTLVNTMNNEVLDREGVIKKFGVPPERIVDYLSLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD SDN+PGV K+GPKTAVK L QY++L+ +I NA NI G +G+NLR +L+WLP+ +++
Sbjct: 180 GDTSDNVPGVAKVGPKTAVKWLTQYHTLDGVIENAQNIGGAVGENLRQSLDWLPQAHELV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
I+T+C+L SI SL+ +P++ + L + F ++
Sbjct: 240 RIRTNCELPDKFASIETSLLKKPENTEGLKKAFERF 275
>gi|374367613|ref|ZP_09625674.1| DNA polymerase I [Cupriavidus basilensis OR16]
gi|373100916|gb|EHP41976.1| DNA polymerase I [Cupriavidus basilensis OR16]
Length = 937
Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats.
Identities = 142/273 (52%), Positives = 199/273 (72%), Gaps = 4/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++ALPD+RN + P GA+YG I MLRKL ++ A Y AC+FDAKGK
Sbjct: 7 TLLLVDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRSDFPAEYSACVFDAKGK 66
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LYP+YK R MP +L QI IH+ V+A+GWPI++++GVEADDVIGTLA++A T
Sbjct: 67 TFRDDLYPAYKEHRPSMPEDLAKQIEPIHEAVRALGWPIVVVEGVEADDVIGTLARRA-T 125
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
++ ++ST DKD+AQLV + + L+N + +I D + ++FGV P++IVDY SLIGD
Sbjct: 126 AEGMRTVVSTGDKDLAQLVDDHVTLVNTMSGEILDPPGVAAKFGVPPDRIVDYLSLIGDA 185
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K+GPKTAVK L +Y +L++++ A IKGV+G+NLR L WLPK ++++T+K
Sbjct: 186 VDNVPGVPKVGPKTAVKWLTEYGTLDDVMAGAPGIKGVVGENLRNTLEWLPKARELVTVK 245
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
DCDLT ++ L +D+ L+ F +Y
Sbjct: 246 VDCDLTSSLADF-HQLKGGNEDKDRLIDFFARY 277
>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
Length = 910
Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats.
Identities = 146/276 (52%), Positives = 197/276 (71%), Gaps = 7/276 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+ALPD+RN P GA+YG + MLR+L+K+Y A Y AC+FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHALPDLRNKAGEPTGAMYGVLNMLRRLHKDYPADYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +YP YKA R MP +L QI +H+ ++A+GWP+L+I GVEADDVIG LA+QA
Sbjct: 63 TFRDDIYPDYKAHRPPMPDDLSRQIEPLHEAIRAMGWPLLMIDGVEADDVIGCLAQQA-E 121
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
++V+IST DKDMAQLV+ I L+N N+I D + ++FG+ P I+DY +LIGD
Sbjct: 122 AQGMQVVISTGDKDMAQLVTPHIKLVNTMTNEILDEAGVEAKFGIPPSLIIDYLTLIGDS 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K+GPKTAVK L Q+ SL+NII NA NI GV+G NLR AL+WLP ++++ I+
Sbjct: 182 VDNVPGVEKVGPKTAVKWLTQHGSLDNIIANAANIGGVVGNNLRKALDWLPTGRELIKIR 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLN 277
DL + L+ QP D L +L+ +++ N
Sbjct: 242 CRLDLPHMVT----ELVTQPADNAKLAELYERFEFN 273
>gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688]
gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688]
Length = 918
Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats.
Identities = 144/284 (50%), Positives = 204/284 (71%), Gaps = 13/284 (4%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+A+PD+RN N P GA+ G + MLR+L+K+Y A Y AC+FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHAMPDLRNKQNEPTGAIQGVLNMLRRLHKDYPADYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +YP YKA R MP +L LQI +H ++A+GWP+++ GVEADDVIG LAKQA
Sbjct: 63 TFRDDIYPEYKANRASMPDDLRLQIEPLHTAIQAMGWPLIVEDGVEADDVIGALAKQA-E 121
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--------NNKIHDRTTIISRFGVSPEKIVDYF 175
+ ++VIIST DKD++QLV+ I ++N +++ D + ++FGV P +VDY
Sbjct: 122 REGMRVIISTGDKDISQLVNEHITVVNTMRDAFRKTDEVLDPAGVEAKFGVPPSLMVDYL 181
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
LIGD SDN+PGV+K+GPKTAVK L QY SLENI+ NA+ I GV+G+NLR AL WLP +
Sbjct: 182 ILIGDSSDNVPGVEKVGPKTAVKWLTQYGSLENIVANADQITGVVGENLRKALPWLPTAR 241
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+++TI+ D + +++ E L +P+D + L++LF++++ L
Sbjct: 242 ELITIRCDVGIQESL----EDLAPRPQDREKLIELFDRFEFKTL 281
>gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus glucosetrophus SIP3-4]
gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus glucosetrophus SIP3-4]
Length = 918
Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats.
Identities = 144/284 (50%), Positives = 204/284 (71%), Gaps = 13/284 (4%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+A+PD+RN N P GA+ G + MLR+L+K+Y A Y AC+FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHAMPDLRNKQNEPTGAIQGVLNMLRRLHKDYPADYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +YP YKA R MP +L LQI +H ++A+GWP+++ GVEADDVIG LAKQA
Sbjct: 63 TFRDDIYPEYKANRASMPDDLRLQIEPLHTAIQAMGWPLIVEDGVEADDVIGALAKQA-E 121
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--------NNKIHDRTTIISRFGVSPEKIVDYF 175
+ ++VIIST DKD++QLV+ I ++N +++ D + ++FGV P +VDY
Sbjct: 122 REGMRVIISTGDKDISQLVNEHITVVNTMRDAFRKTDEVLDPAGVEAKFGVPPSLMVDYL 181
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
LIGD SDN+PGV+K+GPKTAVK L QY SLENII +A+ I GV+G+NLR AL WLP +
Sbjct: 182 ILIGDSSDNVPGVEKVGPKTAVKWLTQYGSLENIIAHADQITGVVGENLRKALPWLPTAR 241
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+++TI+ D + +++ E L +P+D + L++LF++++ L
Sbjct: 242 ELITIRCDVGIQESL----EDLAPRPQDREKLIELFDRFEFKTL 281
>gi|377813367|ref|YP_005042616.1| DNA polymerase I [Burkholderia sp. YI23]
gi|357938171|gb|AET91729.1| DNA polymerase I [Burkholderia sp. YI23]
Length = 912
Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats.
Identities = 146/273 (53%), Positives = 196/273 (71%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GALYG I MLR+L + A Y AC+FDAKGK
Sbjct: 11 TLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRLRREVNAEYSACVFDAKGK 70
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ Y YKA R MP +L QI IH V+A+GWP+++I+ VEADDVIGTLA QA
Sbjct: 71 TFRDDWYAEYKANRPSMPEDLSKQIEPIHVAVRALGWPLVMIERVEADDVIGTLAVQA-E 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K +KVI+ST DKD+AQLV++ + LIN N+ DR ++++FGV PE+IVDY SLIGD
Sbjct: 130 KRGMKVIVSTGDKDLAQLVTDHVTLINTMTNETLDRAGVLTKFGVPPERIVDYLSLIGDT 189
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA+K L Q+ +L+ I+ +A IKG +G NLR AL++LP KK++T+
Sbjct: 190 VDNVPGVEKCGPKTAIKWLTQFETLDGIVEHAGEIKGAVGDNLRKALDFLPMAKKLVTVH 249
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+CDL I SI +L +P+ + L +F ++
Sbjct: 250 TECDLASQIESIEGTLASRPEAREELRDVFLRH 282
>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
STIR1]
gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
STIR1]
Length = 942
Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats.
Identities = 143/275 (52%), Positives = 201/275 (73%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
++ LLLVDGSS +YRAF+A+PD+RN P GA+YG + M+R+ +A +IAC+FDAK
Sbjct: 3 KHRLLLVDGSSYLYRAFHAMPDLRNGAGEPTGAIYGMVNMMRRTRSELKADHIACVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L+ QI IH MVKA+GWP+L++ GVEADDVIGTLA QA
Sbjct: 63 GKTFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKALGWPVLMVGGVEADDVIGTLACQA 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
T+ + IIST+DKD+AQLV++ + LIN N+ D + +FGV PE IVDY S+IG
Sbjct: 123 -TQAGWETIISTDDKDLAQLVNSSVTLINTMTNEKLDIEGVKEKFGVPPELIVDYLSIIG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K GPKTA K L ++ SL+N++ NA+ +KGV+G+NLR +L+WLP+ +++T
Sbjct: 182 DAVDNVPGVPKAGPKTANKWLAEFGSLDNLMANADQVKGVVGENLRASLDWLPQAHQLIT 241
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL+ ++ + + L + +D LL +LF +Y
Sbjct: 242 VKTDCDLSPHLPGL-DDLHAKSEDAPLLRELFERY 275
>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 943
Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats.
Identities = 143/275 (52%), Positives = 200/275 (72%), Gaps = 4/275 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
++ LLLVDGSS +YRAF+A+PD+RN P GA+YG + M+R+ +A +IAC+FDAK
Sbjct: 3 KHRLLLVDGSSYLYRAFHAMPDLRNGAGEPTGAIYGMVNMMRRARSELKADHIACVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L+ QI IH MVKA+GWP+L++ GVEADDVIGTLA QA
Sbjct: 63 GKTFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKAMGWPVLMVSGVEADDVIGTLACQA 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
T+ + IIST DKD+AQLV+ + LIN N+ D +I +FGV PE IVDY S+IG
Sbjct: 123 -TEAGWETIISTGDKDLAQLVNPSVTLINTMTNEKLDIEGVIEKFGVPPELIVDYLSIIG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K GPKTA K L ++ +L+N++ NA+ +KGV+G+NLR +L WLP+ ++++T
Sbjct: 182 DTVDNVPGVPKAGPKTANKWLAEFGNLDNLMANADQVKGVVGENLRASLTWLPQARQLIT 241
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+KTDCDL+ ++ + + L + +D LL +LF +Y
Sbjct: 242 VKTDCDLSPHLPGL-DDLHEKSEDAALLRELFERY 275
>gi|423016455|ref|ZP_17007176.1| DNA polymerase I [Achromobacter xylosoxidans AXX-A]
gi|338780532|gb|EGP44939.1| DNA polymerase I [Achromobacter xylosoxidans AXX-A]
Length = 905
Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats.
Identities = 138/276 (50%), Positives = 199/276 (72%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL +Y+A Y ACIFDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDYKAEYAACIFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ LYP YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADDVIGTLA +
Sbjct: 61 RGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLACR 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + + ++ST DKD+AQLV++ + L+N + ++ D ++++FGV P++IVDY L+
Sbjct: 121 AAER-GVHTVVSTGDKDLAQLVNSHVTLVNTMSGEVLDEAGVVNKFGVPPDRIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTA K ++++ S++ ++ A IKGV G NLR A+ P +++L
Sbjct: 180 GDTVDNVPGVTKVGPKTAAKWISEFGSIDKLVEGAEGIKGVAGSNLREAIPNFPLTRQLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT ++ S+ + L + +DE L +L+ +Y
Sbjct: 240 TVKCDCDLTGHVESV-DDLTPRGRDEATLTELYERY 274
>gi|422322190|ref|ZP_16403232.1| DNA polymerase I [Achromobacter xylosoxidans C54]
gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
Length = 948
Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats.
Identities = 137/276 (49%), Positives = 200/276 (72%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL +Y+A Y ACIFDA
Sbjct: 44 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDYKAEYAACIFDA 103
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ LYP YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADDVIGTLA +
Sbjct: 104 RGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLACR 163
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + + ++ST DKD+AQLV++ + L+N + ++ D ++++FGV+P++IVDY L+
Sbjct: 164 AAER-GVHTVVSTGDKDLAQLVNSHVTLVNTMSGEVLDEAGVLNKFGVAPDRIVDYLMLV 222
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTA K ++++ S++ ++ A IKGV G NLR A+ P +++L
Sbjct: 223 GDTVDNVPGVTKVGPKTAAKWISEFGSIDKLVEGAEGIKGVAGNNLREAIPNFPLTRQLL 282
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT ++ S+ + L + +D+ L +L+ +Y
Sbjct: 283 TVKCDCDLTGHVDSV-DDLTPRDRDDATLTELYERY 317
>gi|394990045|ref|ZP_10382877.1| DNA polymerase I [Sulfuricella denitrificans skB26]
gi|393790310|dbj|GAB72516.1| DNA polymerase I [Sulfuricella denitrificans skB26]
Length = 906
Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats.
Identities = 143/272 (52%), Positives = 195/272 (71%), Gaps = 7/272 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+ALPD+RN N P GA+YG + MLR+L+K+Y A Y AC+FDAKGK
Sbjct: 5 TLLLVDGSSYLYRAFHALPDLRNRHNEPTGAIYGVLNMLRRLHKDYNADYSACVFDAKGK 64
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LYP YKA R MP +L QI +H+ ++A+GWP+L++ GVEADDVIGTL++ A
Sbjct: 65 TFRDDLYPEYKAHRPPMPDDLARQIEPLHEAIRAMGWPLLMVDGVEADDVIGTLSELA-W 123
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ ++ +IST DKDMAQLV+ + L+N +N+ D + ++FGV +IVDY SL+GD
Sbjct: 124 RQGIRTVISTGDKDMAQLVNPHVTLVNTMSNEKLDEAGVETKFGVPATRIVDYLSLVGDA 183
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
D +PGV K+GPKTAVK L QY SL+N+I +AN I GV+G+NLR L+WLPK ++++TIK
Sbjct: 184 VDGVPGVDKVGPKTAVKWLAQYGSLDNLIAHANEIGGVVGENLRNTLDWLPKGRELVTIK 243
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
D L + + QP D L++LF +
Sbjct: 244 CDVALPVELTELGP----QPPDTPKLIELFER 271
>gi|452126208|ref|ZP_21938791.1| DNA polymerase I [Bordetella holmesii F627]
gi|452129576|ref|ZP_21942151.1| DNA polymerase I [Bordetella holmesii H558]
gi|451921303|gb|EMD71448.1| DNA polymerase I [Bordetella holmesii F627]
gi|451923211|gb|EMD73353.1| DNA polymerase I [Bordetella holmesii H558]
Length = 906
Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats.
Identities = 138/276 (50%), Positives = 199/276 (72%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG I MLRKL +++A Y ACIFDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVINMLRKLVLDHKAEYAACIFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ LYP YK+ R +P +L QI IH V+A+GWP++ ++GVEADD+I TLA++
Sbjct: 61 RGKTFRDDLYPEYKSHRPPIPPDLAAQIEPIHAAVRALGWPVMAVEGVEADDIIATLARR 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L ++ST DKD+AQLV+ ++ L+N ++ D ++++FGV +IVDY L+
Sbjct: 121 A-TEEGLHTVVSTGDKDLAQLVNPQVTLVNTMTGEVLDEAGVVNKFGVPANRIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L+++ S++N+I +A++IKGV G NLR A+ P +K+L
Sbjct: 180 GDAVDNVPGVTKVGPKTAVKWLSEFGSIDNLIQHADDIKGVAGSNLREAMVHFPLTRKLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDL + +++ E L + D+ L LF++Y
Sbjct: 240 TVKEDCDL-EGLITSAEDLKPKAPDQATLSALFDRY 274
>gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N]
gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N]
Length = 904
Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats.
Identities = 139/276 (50%), Positives = 198/276 (71%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG I MLRKL +++A Y AC+FDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVINMLRKLVLDHKAEYAACVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+G FR+ +YP YKA R MP +L Q+ IH ++A+GWP+L ++GVEADDVI TLA++
Sbjct: 61 RGGTFRDDIYPEYKAHRPSMPEDLAAQVEPIHAAIRALGWPVLAVEGVEADDVIATLARR 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L I+ST DKD+AQLV+ ++ L+N ++ D T ++++FGV ++IVDY L+
Sbjct: 121 A-TEAGLHTIVSTGDKDLAQLVNPQVTLVNTMTGEVLDETGVVNKFGVPADRIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L+++ S+E++I NA+ IKGV G NLR A+ P +++L
Sbjct: 180 GDTVDNVPGVTKVGPKTAVKWLSEFGSIEHLIQNADGIKGVAGNNLREAIPNFPMTRQLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDL+ + S+ E L D L +L+++Y
Sbjct: 240 TVKDDCDLSAFLTSL-EDLKPTELDRDTLNRLYDRY 274
>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
Length = 905
Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats.
Identities = 145/275 (52%), Positives = 197/275 (71%), Gaps = 13/275 (4%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+ALPD RN +N P GA+YG + MLR+L+K+Y+A Y AC+FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHALPDFRNRNNEPTGAVYGVLNMLRRLHKDYQADYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LY YKA R MP L QI + + + A+GWP+L ++GVEADDVIGTL KQA
Sbjct: 63 TFRDELYAEYKANRPPMPDELAAQIAPLLECINAMGWPMLSVEGVEADDVIGTLVKQA-E 121
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
N++ IIST DKD+AQLV+ ++ L+N N++ D ++ RFGV PE+++DY +L+GD
Sbjct: 122 GENMRCIISTGDKDIAQLVNPQVTLVNTMTNEMLDEAGVLGRFGVPPERMLDYLALVGDA 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K+GPKTAVK LNQY +L+N++ +A I GV+G+NLR AL WL + +++L+IK
Sbjct: 182 VDNIPGVAKVGPKTAVKWLNQYGTLDNLLVHAGEIGGVVGENLRNALGWLSRSRQLLSIK 241
Query: 242 TDCDLTKNIVSIPESLI---LQPKDEKLLMQLFNK 273
D VS+P SL QP D L +L+ +
Sbjct: 242 CD-------VSLPVSLHDLGPQPPDMVKLAELYER 269
>gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I]
gi|384203684|ref|YP_005589423.1| DNA polymerase I [Bordetella pertussis CS]
gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I]
gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS]
Length = 904
Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats.
Identities = 140/276 (50%), Positives = 196/276 (71%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL ++++A Y C+FDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVQDHKAEYAVCVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ L+P YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADD+IGTLA+Q
Sbjct: 61 RGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLARQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + + I+ST DKD+AQLV + L+N + ++ D + S+FGV PE+IVDY L+
Sbjct: 121 A-SAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNSKFGVPPERIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L ++ S++ ++ A+++KGV G NLR A+ P + +L
Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAGNNLREAIPNFPLTRTLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT + VS E L + +D L LF++Y
Sbjct: 240 TVKCDCDLTGH-VSDWEDLAWRERDAATLTALFDRY 274
>gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822]
gi|410419701|ref|YP_006900150.1| DNA polymerase I [Bordetella bronchiseptica MO149]
gi|427821368|ref|ZP_18988431.1| DNA polymerase I [Bordetella bronchiseptica D445]
gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis]
gi|408446996|emb|CCJ58668.1| DNA polymerase I [Bordetella bronchiseptica MO149]
gi|410572368|emb|CCN20643.1| DNA polymerase I [Bordetella bronchiseptica D445]
Length = 904
Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats.
Identities = 140/276 (50%), Positives = 196/276 (71%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL ++++A Y C+FDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVQDHKAEYAVCVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ L+P YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADD+IGTLA+Q
Sbjct: 61 RGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLARQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + + I+ST DKD+AQLV + L+N + ++ D + S+FGV PE+IVDY L+
Sbjct: 121 A-SAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNSKFGVPPERIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L ++ S++ ++ A+++KGV G NLR A+ P + +L
Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAGNNLREAIPNFPLTRTLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT + VS E L + +D L LF++Y
Sbjct: 240 TVKCDCDLTGH-VSDWEDLAWRERDAATLTALFDRY 274
>gi|408415188|ref|YP_006625895.1| DNA polymerase I [Bordetella pertussis 18323]
gi|401777358|emb|CCJ62644.1| DNA polymerase I [Bordetella pertussis 18323]
Length = 904
Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats.
Identities = 140/276 (50%), Positives = 196/276 (71%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL ++++A Y C+FDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVQDHKAEYAVCVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ L+P YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADD+IGTLA+Q
Sbjct: 61 RGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLARQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + + I+ST DKD+AQLV + L+N + ++ D + S+FGV PE+IVDY L+
Sbjct: 121 A-SAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNSKFGVPPERIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L ++ S++ ++ A+++KGV G NLR A+ P + +L
Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAGNNLREAIPNFPLTRTLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT + VS E L + +D L LF++Y
Sbjct: 240 TVKCDCDLTGH-VSDWEDLAWRERDAATLTALFDRY 274
>gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
Length = 912
Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats.
Identities = 140/270 (51%), Positives = 198/270 (73%), Gaps = 7/270 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+ALPD+RN N P GA+YG + MLR+L+K YR Y AC+FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHALPDLRNRLNEPTGAIYGVLNMLRRLHKEYRPDYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +YP YKA R MP +L+ QI ++ ++A+GWP+LI +GVEADDVIGTL ++A+
Sbjct: 63 TFRDDIYPQYKAHRPPMPEDLVCQIGPLYACIRAMGWPLLIEEGVEADDVIGTLVERAIA 122
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + +I+T DKD+AQLV I L+N NN+ D + I+ +FGV+P +I+D+ +L+GD
Sbjct: 123 RQ-AQCVIATGDKDIAQLVRPGIWLVNTMNNESLDESGILQKFGVTPAQIIDFLALVGDS 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K+GPKTAVK L+QY +L+++I +A+ IKGV+G+NLR AL+WL +K+LTIK
Sbjct: 182 VDNIPGVEKVGPKTAVKWLDQYGTLDDLIAHADEIKGVVGENLRKALDWLKVSRKLLTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
D L + + L+ P D L +L+
Sbjct: 242 CDVPLAMDW----QDLVAVPPDTARLTELY 267
>gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259]
gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259]
Length = 907
Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats.
Identities = 136/275 (49%), Positives = 194/275 (70%), Gaps = 7/275 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+ALPD+RN P A+ G + ML +L K+Y A YIAC+FDAKGK
Sbjct: 12 TLLLVDGSSYLYRAFHALPDLRNAAGEPTSAIKGVLAMLHRLRKDYAADYIACVFDAKGK 71
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LYP+YKA R MP +L QI +H+ ++A GWP+++I GVEADDVIGTL + A
Sbjct: 72 TFRDDLYPAYKANRPAMPDDLRSQIEPLHEAIRAEGWPLVVIDGVEADDVIGTLVRHAAQ 131
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALINNNKIH--DRTTIISRFGVSPEKIVDYFSLIGDM 181
K ++ I+ST DKDMAQLV + L+N + D ++++FGV+P++I+DY +L+GD
Sbjct: 132 K-GIRSIVSTGDKDMAQLVDGHVTLVNTMSLETLDEAGVVAKFGVAPDRIIDYLTLVGDA 190
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTA K L +Y +L+N++ +A+ +KG +G+NLR ++WLP+ + +LTIK
Sbjct: 191 VDNVPGVAKCGPKTAAKWLAEYGTLDNLLAHADAVKGAVGENLRAVVDWLPQARALLTIK 250
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
TD L + + L+L+P+D L LF +Y+
Sbjct: 251 TDVALPFDF----DDLVLKPRDIDALRGLFERYEF 281
>gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50]
gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50]
Length = 904
Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats.
Identities = 139/276 (50%), Positives = 196/276 (71%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL ++++A Y C+FDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVQDHKAEYAVCVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ L+P YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADD+IGTLA+Q
Sbjct: 61 RGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLARQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + + I+ST DKD+AQLV + L+N + ++ D + ++FGV PE+IVDY L+
Sbjct: 121 A-SAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNNKFGVPPERIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L ++ S++ ++ A+++KGV G NLR A+ P + +L
Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAGNNLREAIPNFPLTRTLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT + VS E L + +D L LF++Y
Sbjct: 240 TVKCDCDLTGH-VSDWEDLAWRERDAATLTALFDRY 274
>gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804]
gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii]
Length = 948
Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats.
Identities = 140/276 (50%), Positives = 192/276 (69%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL +++A Y ACIFDA
Sbjct: 44 MNKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDHKADYAACIFDA 103
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ LYP YK+ R MP +L QI IHQ V+A+GW +L I+GVEADD+IGTLA Q
Sbjct: 104 RGKTFRDDLYPDYKSHRPPMPEDLAAQIEPIHQAVRALGWQVLAIEGVEADDIIGTLACQ 163
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + ++ I+ST DKD+AQLV + L+N + ++ D T + ++FGV P++IVDY L+
Sbjct: 164 A-SGMGIRTIVSTGDKDLAQLVDANVTLVNTMSGEVLDETGVRNKFGVPPDRIVDYLMLV 222
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTA K L ++ S+++++ A+ IKGV G NLR A+ P +++L
Sbjct: 223 GDAIDNVPGVAKVGPKTAAKWLAEFGSIDSLVEQADGIKGVAGNNLREAIGQFPLTRQLL 282
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDL +I I + QP D L L+ +Y
Sbjct: 283 TVKCDCDLAGHIGGIDDLAPRQP-DTDTLQALYERY 317
>gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454]
gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
Length = 927
Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats.
Identities = 143/265 (53%), Positives = 192/265 (72%), Gaps = 5/265 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GALYG I M+R+L ++ A Y AC+FDAKGK
Sbjct: 14 TLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGLINMMRRLRRDIPAEYSACVFDAKGK 73
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ Y YKA R MP +L QI IH V+A+GWP+L+I+ VEADDVIGTLA +A
Sbjct: 74 TFRDDWYADYKAHRPPMPEDLARQIEPIHVAVRALGWPLLMIERVEADDVIGTLAVRA-A 132
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + V++ST DKD+AQLV+ ++ LIN N+ DR +I++FGV PE+IVDY +LIGD
Sbjct: 133 QAGMNVVVSTGDKDLAQLVNERVTLINTMTNERLDRDGVIAKFGVPPERIVDYLTLIGDT 192
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTA+K L QY +L+ II +AN+IKG +G NLR AL +LP ++++T+
Sbjct: 193 VDNVPGVDKCGPKTALKWLAQYQTLDGIIEHANDIKGAVGDNLRRALAFLPTARRLVTVH 252
Query: 242 TDCDLTKNIVSIPESLI--LQPKDE 264
T+CDL+ + SI SL + KDE
Sbjct: 253 TECDLSPQVQSIATSLQARAEAKDE 277
>gi|412338365|ref|YP_006967120.1| DNA polymerase I [Bordetella bronchiseptica 253]
gi|427814161|ref|ZP_18981225.1| DNA polymerase I [Bordetella bronchiseptica 1289]
gi|408768199|emb|CCJ52959.1| DNA polymerase I [Bordetella bronchiseptica 253]
gi|410565161|emb|CCN22713.1| DNA polymerase I [Bordetella bronchiseptica 1289]
Length = 904
Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats.
Identities = 139/276 (50%), Positives = 195/276 (70%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL ++++A Y C+FDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVQDHKAEYAVCVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ L+P YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADD+IGTLA+Q
Sbjct: 61 RGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLARQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + + I+ST DKD+AQLV + L+N + ++ D + +FGV PE+IVDY L+
Sbjct: 121 A-SAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNDKFGVPPERIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L ++ S++ ++ A+++KGV G NLR A+ P + +L
Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAGNNLREAIPNFPLTRTLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT + VS E L + +D L LF++Y
Sbjct: 240 TVKCDCDLTGH-VSDWEDLAWRERDAATLTALFDRY 274
>gi|410473538|ref|YP_006896819.1| DNA polymerase I [Bordetella parapertussis Bpp5]
gi|408443648|emb|CCJ50325.1| DNA polymerase I [Bordetella parapertussis Bpp5]
Length = 904
Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats.
Identities = 139/276 (50%), Positives = 195/276 (70%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL ++++A Y C+FDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVQDHKAEYAVCVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ L+P YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADD+IGTLA+Q
Sbjct: 61 RGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLARQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + + I+ST DKD+AQLV + L+N + ++ D + +FGV PE+IVDY L+
Sbjct: 121 A-SAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNDKFGVPPERIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L ++ S++ ++ A+++KGV G NLR A+ P + +L
Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAGNNLREAIPNFPLTRTLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT + VS E L + +D L LF++Y
Sbjct: 240 TVKCDCDLTGH-VSDWEDLAWRERDAATLTALFDRY 274
>gi|427823441|ref|ZP_18990503.1| DNA polymerase I [Bordetella bronchiseptica Bbr77]
gi|410588706|emb|CCN03766.1| DNA polymerase I [Bordetella bronchiseptica Bbr77]
Length = 904
Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats.
Identities = 140/276 (50%), Positives = 195/276 (70%), Gaps = 4/276 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRAF+A+PD+RN P GALYG + MLRKL ++++A Y C+FDA
Sbjct: 1 MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVQDHKAEYAVCVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+GK FR+ L+P YK+ R MP +L QI IH+ V+A GWP+L I+GVEADD+IGTLA+Q
Sbjct: 61 RGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRAQGWPLLAIEGVEADDIIGTLARQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + + I+ST DKD+AQLV + L+N + ++ D + S+FGV PE+IVDY L+
Sbjct: 121 A-SAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNSKFGVPPERIVDYLMLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L ++ S++ ++ A+++KGV G NLR A+ P + +L
Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAGNNLREAIPNFPLTRTLL 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
T+K DCDLT + VS E L + +D L LF++Y
Sbjct: 240 TVKCDCDLTGH-VSDWEDLAWRERDAATLTALFDRY 274
>gi|410693464|ref|YP_003624085.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
Length = 922
Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats.
Identities = 140/286 (48%), Positives = 192/286 (67%), Gaps = 7/286 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRAT----YIACIFD 59
TLLLVDGSS +YRAF+A+PD+R + P GALYG + MLR+L + Y Y AC+FD
Sbjct: 12 TLLLVDGSSYLYRAFHAMPDLRGPEGQPTGALYGMVAMLRRLREQYPVAKGYRYAACVFD 71
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
AKG FRN +Y YKA R MP +L+ QI IHQ V+ +GWP+L + GVEADDVIGTLA
Sbjct: 72 AKGPTFRNAMYDQYKAQRPPMPPDLVAQIEPIHQAVRLMGWPLLEVPGVEADDVIGTLAV 131
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
+A + ++ ++ST DKDMAQLV++ I L+N +N++ D + +FGV P++IVDY +L
Sbjct: 132 RAHAQ-GIRTLVSTGDKDMAQLVNDHITLVNTMSNEVLDPAGVQQKFGVPPDRIVDYLTL 190
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTAVK L +Y SL+ +I A + G GKNLR AL+WLP +K+
Sbjct: 191 VGDAVDNVPGVDKVGPKTAVKWLTEYGSLDALIEQAETVSGAAGKNLRAALDWLPTARKL 250
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKLNFLM 283
+TI TDCDL + L P+D + L+ F + + + + M
Sbjct: 251 VTIHTDCDLDGYAQAFDPDLRPAPEDAQALLPFFTRNGMRRFSAEM 296
>gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91]
gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91]
Length = 906
Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats.
Identities = 141/270 (52%), Positives = 194/270 (71%), Gaps = 7/270 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TL+LVDGSS +YRAF+ALPD+RN N P GA+YG + MLR+LYK Y+ Y AC+FDAKGK
Sbjct: 3 TLVLVDGSSYLYRAFHALPDLRNRLNEPTGAIYGVLNMLRRLYKEYQPDYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR +YP YKA R MP +L QIN ++ ++A+GWP+L+ + VEADDVIGTLA++A
Sbjct: 63 TFREEIYPQYKANRPPMPADLAGQINPLYACIRAMGWPLLVEEQVEADDVIGTLARRAAG 122
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ ++ +IST DKD+AQLV+ I L+N N++ D ++ +FGV P +I+D+ +L+GD
Sbjct: 123 ER-IQCVISTGDKDIAQLVAPGIRLVNTMNSESLDEAGVLQKFGVMPAQIIDFLALVGDS 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K+GPKTAVK LNQY SL N+I +A+ IKGV+G+NLR AL+WL +++LTIK
Sbjct: 182 VDNIPGVEKVGPKTAVKWLNQYGSLNNLIAHAHEIKGVVGENLRKALDWLQVSRELLTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
D L + L+ P D LM L+
Sbjct: 242 CDVPLAMGW----QDLVAAPLDVARLMALY 267
>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
Length = 934
Score = 286 bits (733), Expect = 6e-75, Method: Composition-based stats.
Identities = 140/286 (48%), Positives = 191/286 (66%), Gaps = 7/286 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRAT----YIACIFD 59
TLLLVDGSS +YRAF+A+PD+R + P GALYG + MLR+L + Y Y AC+FD
Sbjct: 24 TLLLVDGSSYLYRAFHAMPDLRGPEGQPTGALYGMVAMLRRLREQYPVAKGYRYAACVFD 83
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
AKG FRN +Y YKA R MP +L+ QI IHQ V+ +GWP+L + GVEADDVIGTLA
Sbjct: 84 AKGPTFRNAMYDQYKAQRPPMPPDLVAQIEPIHQAVRLMGWPLLEVPGVEADDVIGTLAV 143
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
+A + ++ ++ST DKDMAQLV++ I L+N +N++ D + +FGV P++IVDY +L
Sbjct: 144 RAHAQ-GIRTLVSTGDKDMAQLVNDHITLVNTMSNEVLDPAGVQQKFGVPPDRIVDYLTL 202
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTAVK L +Y SL+ +I A + G GKNLR AL+WLP +K+
Sbjct: 203 VGDAVDNVPGVDKVGPKTAVKWLTEYGSLDALIEQAETVSGAAGKNLRAALDWLPTARKL 262
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKLNFLM 283
+TI TDCDL + L P+D + L+ F + + + M
Sbjct: 263 VTIHTDCDLDGYAKAFDPDLRPAPEDAQALLPFFTSNGMRRFSAEM 308
>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
Length = 942
Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats.
Identities = 139/281 (49%), Positives = 199/281 (70%), Gaps = 13/281 (4%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+A+PD+RN N PVGA+ G + MLR+L+K+Y A Y AC+FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHAMPDLRNSANEPVGAIQGVLNMLRRLHKDYPAEYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +YP YKA R MP +L QI + + ++A+GWP++I GVEADDVIG LAKQA
Sbjct: 63 TFRDDIYPEYKANRASMPDDLRSQIEPLFETIRAMGWPLIIEDGVEADDVIGALAKQA-E 121
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--------NNKIHDRTTIISRFGVSPEKIVDYF 175
+ +K IIST DKD++QLV+ +I ++N + + D + ++FG+ P I+DY
Sbjct: 122 QQGIKTIISTGDKDISQLVNEQITVVNTMRDAFRKTDDVLDVAGVENKFGIPPSLIIDYL 181
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
LIGD SDN+PGV+K+GPKTAVK L +Y +L+NI+ NA++IKGV+G+NLR AL WLP +
Sbjct: 182 VLIGDTSDNVPGVEKVGPKTAVKWLKEYGTLDNIVANADSIKGVVGENLRKALPWLPTAR 241
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
+++TI+ D + ++ + L+ Q D+ L LF+ ++
Sbjct: 242 ELITIRCDVGIREHF----DELVQQAPDKAKLAALFDHFEF 278
>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
Length = 927
Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats.
Identities = 136/279 (48%), Positives = 195/279 (69%), Gaps = 8/279 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYR-----ATYIACIFD 59
LLLVDGSS +YRAF+A+PD+RN P GA+YG + MLR+L +Y + IAC+FD
Sbjct: 4 LLLVDGSSYLYRAFHAMPDLRNRAGEPTGAIYGMVNMLRRLRADYNTDDITSNCIACVFD 63
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A GK FR+ +YP YKA R MP +L QI IH++ +A+GWPI++ G+EADDVIGTLA+
Sbjct: 64 APGKTFRDDIYPEYKANRASMPEDLAAQIPHIHEVTRAMGWPIVMEPGIEADDVIGTLAQ 123
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSL 177
A+ + +VI+ST DKDMAQLV++K+ L++ N + R ++ +FGV PE+IVDY +L
Sbjct: 124 VALEQGFDEVIVSTGDKDMAQLVNDKVRLVDTMKNAVMTRDSVFEKFGVYPEQIVDYLTL 183
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV+K+GPKTA K L +Y +L+ ++ NA+ I G +G+NL+ AL+WLP K +
Sbjct: 184 VGDTVDNVPGVEKVGPKTAAKWLAEYKTLDGVVANADKIGGKVGENLQKALDWLPTGKSL 243
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
+TIKTDC+ I E L P+++ L LF +++
Sbjct: 244 VTIKTDCEFELR-RHIEEQLKANPENKDALKDLFQRFEF 281
>gi|375107040|ref|ZP_09753301.1| DNA polymerase I [Burkholderiales bacterium JOSHI_001]
gi|374667771|gb|EHR72556.1| DNA polymerase I [Burkholderiales bacterium JOSHI_001]
Length = 927
Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats.
Identities = 133/282 (47%), Positives = 198/282 (70%), Gaps = 5/282 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+NTLLLVDGSS +YRA++A+PD+R D FP GA++G + M+++L + A + AC+FDA
Sbjct: 6 ENTLLLVDGSSYLYRAYHAMPDLRGPDGFPTGAIHGMVAMMKRLRADVGAGHAACVFDAS 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ YP YKA R MP +L QI IH++V+ +GWP+L + G+EADD IGTLA+
Sbjct: 66 GPTFRDDWYPEYKANRAPMPDDLRQQIAPIHEVVRLLGWPVLEVPGIEADDAIGTLARVG 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ +VIIST DKD+AQLV+ ++ LIN +N+ D ++ +FGV P +I+DY +LIG
Sbjct: 126 ADSGH-RVIISTGDKDLAQLVNEQVTLINTMSNERLDIDGVMKKFGVPPSRIIDYLTLIG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTA K + ++ SL+ ++ A +IKGV G+NLR AL+WLP+ ++++T
Sbjct: 185 DAVDNVPGVDKVGPKTAAKWIAEHGSLDGVVAAAASIKGVAGENLRNALDWLPQGRRLIT 244
Query: 240 IKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
+ TDCDL +I P ++L L+ D + L+ + +Y N+L
Sbjct: 245 VVTDCDLAPHIAGWPVLDALALKAVDREGLLNFYQRYGFNQL 286
>gi|372487149|ref|YP_005026714.1| DNA polymerase I [Dechlorosoma suillum PS]
gi|359353702|gb|AEV24873.1| DNA polymerase I [Dechlorosoma suillum PS]
Length = 910
Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats.
Identities = 142/277 (51%), Positives = 193/277 (69%), Gaps = 10/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRA---TYIACIFDAK 61
LLLVDGSS +YRAF+ALPD+RN P GA+YG + MLR+L +Y+A TY A +FDAK
Sbjct: 4 LLLVDGSSYLYRAFHALPDLRNKAGEPTGAIYGVLNMLRRLESDYKAEGVTYKAVVFDAK 63
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ YP YKA R MP +L+ QI +H +KA GWP+L+ GVEADDVIGTLA+QA
Sbjct: 64 GKTFRDDWYPEYKAQRPPMPTDLVAQIEPLHAAIKASGWPLLMEDGVEADDVIGTLARQA 123
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKD+ QLVS ++ +N +N++ D + ++FGV P +IVDY +LIG
Sbjct: 124 EAA-GMDVVISTGDKDLTQLVSPRVRWVNTMSNEVLDEAGVTAKFGVEPGRIVDYLALIG 182
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTA+K L QY +L+NI+ NA I GV+G NLR AL++LP KK++T
Sbjct: 183 DTVDNVPGVAKVGPKTALKWLEQYGTLDNIMANAEAIGGVVGNNLRQALDFLPLGKKLVT 242
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
+ D L + P SL +P D+ L ++F++Y+
Sbjct: 243 VVCDLPLPET----PASLAPRPLDKAALEEIFSRYEF 275
>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
Length = 907
Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats.
Identities = 140/280 (50%), Positives = 196/280 (70%), Gaps = 12/280 (4%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+A+P++RN P A+YG MLR+L +++ A Y C+FDAKGK
Sbjct: 5 TLLLVDGSSFLYRAFHAIPEMRNQHGEPTNAIYGVHNMLRRLRQDFPADYSLCVFDAKGK 64
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LYP YKA R MP +L+ QI +HQ++ A GW I +++GVEADDVIGTLA+QA +
Sbjct: 65 TFRDDLYPQYKANRPSMPADLVAQIEPLHQLIAASGWKIAMVEGVEADDVIGTLARQA-S 123
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ ++ I++T DKD+AQLV + LIN NN+ D + ++FGV PE IVDY +L+GD
Sbjct: 124 RDGVRCIVATGDKDLAQLVDEHVTLINTMNNETLDMAGVKAKFGVPPELIVDYLALMGDT 183
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K+GPKTAVK L Q+ SL+N++ NA+ I GV+G NLR AL WLP+ ++++T+K
Sbjct: 184 VDNVPGVEKVGPKTAVKWLLQHGSLDNLMRNADTISGVVGANLRNALEWLPQARQLVTVK 243
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKLNF 281
CD+ + + L+ D+ L QLF +LNF
Sbjct: 244 --CDVPD--LPLYAELVAPTPDKAALRQLF-----ERLNF 274
>gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera versatilis 301]
gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera versatilis 301]
Length = 928
Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats.
Identities = 136/281 (48%), Positives = 196/281 (69%), Gaps = 13/281 (4%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+A+PD+RN N P GA+ G + MLR+L+K+Y + Y AC+FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHAMPDLRNSQNEPTGAIQGVLNMLRRLHKDYPSDYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ +Y YKA R MP +L LQI +H+ +KA+GWP+++ GVEADDVIG LAKQA
Sbjct: 63 TFRDDIYAEYKANRASMPDDLRLQIEPLHEAIKAMGWPLIVESGVEADDVIGALAKQA-E 121
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--------NNKIHDRTTIISRFGVSPEKIVDYF 175
+ ++ IIST DKD++QLV+ I ++N + + D + ++FG+ P +VDY
Sbjct: 122 REGIRTIISTGDKDISQLVNEHITVVNTMRDAFRRTDDVLDIAGVENKFGIPPSLMVDYL 181
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
LIGD SDN+PGV+K+GPKTAVK L +Y SL+NI+ NA+ I G +G+NLR AL WLP +
Sbjct: 182 VLIGDTSDNVPGVEKVGPKTAVKWLKEYGSLDNIVANADKITGKVGENLRAALGWLPTAR 241
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
+++TI+ D + +N+ + I D+ L +LF++++
Sbjct: 242 ELITIRCDVGIQENLSDLSPQTI----DKAKLAELFDRFEF 278
>gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
12472]
gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
12472]
Length = 928
Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats.
Identities = 139/270 (51%), Positives = 184/270 (68%), Gaps = 3/270 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLL+DGSS +YRAF+A+PD+R+ D PVGA+YG + MLR+L K Y AC+FDAKGK
Sbjct: 3 TLLLIDGSSYLYRAFHAMPDLRSPDGRPVGAVYGMVNMLRRLEKEVEFDYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LYP YKA R MP L QI +H +V+A GWP+L++ GVEADDVIGTLA+
Sbjct: 63 TFRDDLYPEYKANRPSMPEELASQITAVHDVVQASGWPMLVVPGVEADDVIGTLARLGAA 122
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+KVI+ST DKDMAQLV+ + L+N N++ D + +FGV P I+DY +LIGD
Sbjct: 123 A-GMKVIVSTGDKDMAQLVTPDVTLVNTMTNELLDEAGVKEKFGVPPSLIIDYLTLIGDK 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTAVK L +Y SL+ II A ++ G +G+NLR AL+WLP ++++TI
Sbjct: 182 VDNVPGVDKCGPKTAVKWLEEYGSLDAIIAQAGSVGGKVGENLRAALDWLPMGRRLITID 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
D DL ++ L KD+ L +LF
Sbjct: 242 CDVDLEADLPHGLPGLQHGQKDKPRLAELF 271
>gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
Length = 904
Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 134/242 (55%), Positives = 175/242 (72%), Gaps = 3/242 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+A+PD RN D P G +YG + MLR ++K Y + Y CIFDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHAMPDFRNKDGEPTGVIYGVLNMLRNIHKQYPSDYSVCIFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FRN +Y YKA R MP +L QI + + + A+GWP+LI GVEADDVIGTL +QA
Sbjct: 63 TFRNDIYTEYKANRPSMPDDLACQIEPLKEAINAMGWPMLIESGVEADDVIGTLTQQA-N 121
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
HN+KV+IST DKD+AQLV+ LIN N++ D + ++FGV P+ I+DY S+IGD
Sbjct: 122 SHNIKVVISTGDKDLAQLVNEHTVLINTMTNELLDIDGVKNKFGVPPQLIIDYLSIIGDK 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
+DN+PGV+K+GPKTA+K L +Y L++II NA+ GV+G NLR AL WLP K+++TIK
Sbjct: 182 ADNVPGVEKVGPKTALKWLEEYGDLKSIIGNADKFTGVVGNNLRQALAWLPTAKELITIK 241
Query: 242 TD 243
D
Sbjct: 242 CD 243
>gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
Length = 915
Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats.
Identities = 130/275 (47%), Positives = 193/275 (70%), Gaps = 5/275 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++ALPD+R+ D FP GAL+G + M+++L + A + C+FDAKG
Sbjct: 7 TLLLVDGSSYLYRAYHALPDLRSPDGFPTGALHGMVAMMKRLREQVPAEHAVCVFDAKGP 66
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ Y YKA R MP L Q+ IH++V+ +GWP+L + G+EADD IGTLA A
Sbjct: 67 TFRDDWYADYKAHRPSMPEPLAQQVAPIHEVVRLLGWPVLEVPGIEADDAIGTLACVA-K 125
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ +V++ST DKD+AQLV + LIN +N+ D ++++FGV P++IVDY +L+GD
Sbjct: 126 RAGHRVVVSTGDKDLAQLVDEHVTLINTMSNETLDPAGVLAKFGVPPQRIVDYLTLVGDA 185
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K+GPKTAVK + ++ SL+ ++ A IKGV G+NLR AL+WLP+ ++++T+
Sbjct: 186 VDNIPGVEKVGPKTAVKWITEHGSLDGVMAAAATIKGVAGENLRRALDWLPQGRRLVTVA 245
Query: 242 TDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKY 274
DCDL ++ P ++L L+P DE L+ + +Y
Sbjct: 246 CDCDLAAHVPGWPALDALALRPADEAGLLDFYRRY 280
>gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9]
gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9]
Length = 932
Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats.
Identities = 133/249 (53%), Positives = 175/249 (70%), Gaps = 3/249 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLL+DGSS +YRAF+A+PD+R+ D P GA+YG I MLR+L + A Y ACIFDAKGK
Sbjct: 3 TLLLIDGSSYLYRAFHAMPDLRSPDGAPTGAVYGMINMLRRLEREVAADYSACIFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LYP+YKA R MP +L QI +H V+A+GWP+L++ GVEADDVIGTLAK A
Sbjct: 63 TFRDDLYPAYKAHRPPMPDDLRQQIAPVHAAVRALGWPLLMVDGVEADDVIGTLAKNAAA 122
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+V+IST DKDMAQLV+ ++ L+N + D + +FGV P +I+DY +L GD
Sbjct: 123 A-GFQVVISTGDKDMAQLVTPQVKLVNTMTEEWLDEAGVAGKFGVPPARIIDYLTLTGDK 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTAVK L Y L+ ++ AN + G +G+NLR AL WLP ++++TIK
Sbjct: 182 VDNVPGVDKCGPKTAVKWLENYGDLDTLMAQANEVGGKVGENLRTALAWLPLSRRLVTIK 241
Query: 242 TDCDLTKNI 250
TD DL +
Sbjct: 242 TDVDLATEL 250
>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
Length = 934
Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats.
Identities = 133/264 (50%), Positives = 189/264 (71%), Gaps = 5/264 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+PD+R D P GA++G + ML+ L A + AC+FDAKG
Sbjct: 9 TLLLVDGSSYLYRAYHAMPDLRGPDGQPTGAIHGLVAMLKLLRSQIGAEHAACVFDAKGP 68
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L LQI IH++V+ +GWP+L + G+EADDVIGTLA Q
Sbjct: 69 TFRDDWYPLYKAQRPPMPDDLRLQIEPIHEVVRLLGWPVLEVPGIEADDVIGTLA-QLAE 127
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K +V+IST DKD+AQLV+ + LIN + + D + ++FGV P++IVDY +L+GD
Sbjct: 128 KSGHRVVISTGDKDLAQLVTEHVTLINTMSRESLDIEGVKAKFGVPPDRIVDYLTLMGDT 187
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K+GPKTA K + ++ SL+ ++ A +IKGV G+NLR AL+WLP +K++T+K
Sbjct: 188 VDNVPGVEKVGPKTAAKWIAEHGSLDGVVAAAGSIKGVAGENLRRALDWLPTARKLVTVK 247
Query: 242 TDCDLTKNIVSIP--ESLILQPKD 263
TDCDL+ ++ + P E+L L+ D
Sbjct: 248 TDCDLSGHVPAWPALEALALREVD 271
>gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13]
gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13]
Length = 901
Score = 273 bits (697), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 130/275 (47%), Positives = 197/275 (71%), Gaps = 7/275 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LL+DGSS +YRA++ALPD+RN +N P G +YG + ML+K Y + ++ C+FDAKGK
Sbjct: 4 ILLIDGSSYLYRAYHALPDLRNQNNEPSGVIYGVLNMLKKTMAEYTSDFVVCVFDAKGKT 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN +Y YKA R MP +L +QI + + + A+G +L I+GVEADDVIGTLA+ AV K
Sbjct: 64 FRNDIYSDYKANRPHMPEDLAVQIEPLKKAIHALGISMLSIEGVEADDVIGTLAEDAV-K 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++ VIIST DKD+AQLV++ I L+N N++ D ++ +FGV PE+IVDY +LIGD +
Sbjct: 123 QDMDVIISTGDKDLAQLVNDNITLVNTMTNEVLDAEGVLKKFGVPPEQIVDYLTLIGDKA 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTAVK LN++ L+NI+ N++ I G +G +L+ A++WLP K ++TIK
Sbjct: 183 DNIPGVDKVGPKTAVKWLNEFGDLDNIVANSDQISGAVGAHLKSAIDWLPTGKSLITIKK 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLN 277
D ++ N++ ++ + +D+K L++++ Y +
Sbjct: 243 DVEM--NVLF--DNFLKSEQDKKELLKIYQHYNFS 273
>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
Length = 944
Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats.
Identities = 140/286 (48%), Positives = 191/286 (66%), Gaps = 9/286 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPV----GALYGTIKMLRKLYKNYRATYIACI 57
+ TLLLVDGSS +YRAF+A+PD+R P GA+ G I M++KL K+ RA Y AC+
Sbjct: 5 KKTLLLVDGSSYLYRAFHAMPDLRANPGDPTSPATGAIRGMINMMQKLRKDVRADYAACV 64
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDAKG FR+ LYP YKA R MP +L Q+ IH++V+ +GW +L + GVEADDVIGTL
Sbjct: 65 FDAKGPTFRDALYPQYKAQRSPMPDDLRSQVEPIHEVVRLLGWKVLDVPGVEADDVIGTL 124
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
A A +K ++VIIS+ DKD++QLV I +I+ N++ D + + FGV P +VDY
Sbjct: 125 ACLA-SKQGIEVIISSGDKDLSQLVDENITVIDTMNDRRRDLAGVEAEFGVPPRLMVDYQ 183
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L+GD DN+PGV K+GPKTAVK L +Y SL+ ++ A IKGV+G NLR +L+WLPK +
Sbjct: 184 ALVGDAVDNVPGVPKVGPKTAVKWLLEYGSLDALVARAGEIKGVVGDNLRLSLDWLPKGR 243
Query: 236 KILTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
++LTIK DCDL I +P ES+ + + L + KY L
Sbjct: 244 ELLTIKKDCDLIGYIDGLPALESIAIGGQQTDALKAFYEKYGFKGL 289
>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
Length = 906
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 135/274 (49%), Positives = 187/274 (68%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
LLLVDGSS +YRAF+ALPD+RN P GA+YG + MLR+L +Y+A Y A +FDAKGK
Sbjct: 4 LLLVDGSSYLYRAFHALPDLRNKAGEPTGAIYGVLNMLRRLESDYKAEYKAVVFDAKGKT 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ YP YKA R MP +L+ QI +H +KA GWP+L++ GVEADDVIGTLA A T
Sbjct: 64 FRDDWYPEYKAHRPPMPDDLVQQIEPLHAAIKAAGWPLLMVDGVEADDVIGTLATNA-TA 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++ +IST DKD+ QLVS+ + N +N++ D + ++FGV P KIVDY +L+GD
Sbjct: 123 DGIETLISTGDKDLTQLVSSHVRWYNTMSNELLDEAGVEAKFGVPPGKIVDYLALVGDTV 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
D +PGV K GPKTA+K L QY SL+ ++ +AN I GV+G+NLR L +LP K+++T+
Sbjct: 183 DGVPGVAKCGPKTALKWLAQYGSLDEVVAHANEIGGVVGQNLRDHLGFLPLGKRLVTVA- 241
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
CDL+ + P +L +D L +L+ +Y+
Sbjct: 242 -CDLSN--LPAPSTLTTTARDTATLRELYTRYQF 272
>gi|393759235|ref|ZP_10348051.1| DNA polymerase I [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393162463|gb|EJC62521.1| DNA polymerase I [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 905
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 131/277 (47%), Positives = 197/277 (71%), Gaps = 6/277 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRA++A+PD+RN P GALYG I MLR+L ++Y+A Y+ C+FDA
Sbjct: 1 MKKTLLLVDGSSYLYRAYHAMPDLRNAQGQPTGALYGVINMLRRLLQDYQADYMVCVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KG+ FR+ LY YKA R MP ++ +QI +H+ V+A+GW ++ GVEADD+IGTL++
Sbjct: 61 KGRTFRDDLYDQYKANRPSMPDDMAVQIEPLHRAVRAMGWHLICQSGVEADDIIGTLSRL 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A ++ ++ ++ST DKD+AQLV+ + L+N +N+ D +IS++GV P++IVDY LI
Sbjct: 121 A-AENGIETVVSTGDKDLAQLVNEHVRLVNTMSNEKLDVDGVISKYGVRPDQIVDYLMLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLR-FALNWLPKLKKI 237
GD SDN+PGV K+GPKTA K L +Y SL+ ++ +A+ IKGV G+NLR F+ N+ +K+
Sbjct: 180 GDTSDNVPGVPKVGPKTAAKWLGEYGSLDELLRHADKIKGVAGQNLRDFSANF-EMTRKL 238
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+T+K DC++ E+L +P+D+ L ++ Y
Sbjct: 239 VTVKLDCEV-PGFTGDFEALEPEPRDKATLQDIYETY 274
>gi|383759240|ref|YP_005438225.1| DNA polymerase I PolA [Rubrivivax gelatinosus IL144]
gi|381379909|dbj|BAL96726.1| DNA polymerase I PolA [Rubrivivax gelatinosus IL144]
Length = 916
Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats.
Identities = 126/253 (49%), Positives = 181/253 (71%), Gaps = 3/253 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++ALPD+R+ D FP GAL+G + M+++L + A + C+FDAKG
Sbjct: 7 TLLLVDGSSYLYRAYHALPDLRSPDGFPTGALHGMVAMMKRLREQVPAEHAVCVFDAKGP 66
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ Y YKA R MP L+ QI IH++V+ +GWP+L + G+EADD IGTLA A
Sbjct: 67 TFRDDWYADYKAQRAPMPEPLVQQIAPIHEVVRLLGWPVLEVPGIEADDAIGTLACVA-K 125
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ +V++ST DKD+AQLV + LIN +N+ D ++++FGV PEKIVDY +L+GD
Sbjct: 126 RAGHRVVVSTGDKDLAQLVDEHVTLINTMSNETLDPAGVLAKFGVPPEKIVDYLTLVGDA 185
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K+GPKTAVK + ++ SL+ ++ A IKGV G+NLR AL+WLP+ ++++T+
Sbjct: 186 VDNIPGVEKVGPKTAVKWIAEHGSLDGVMAAAATIKGVAGENLRRALDWLPQGRRLVTVA 245
Query: 242 TDCDLTKNIVSIP 254
DCDL ++ P
Sbjct: 246 CDCDLAAHVAGWP 258
>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
Length = 921
Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats.
Identities = 133/284 (46%), Positives = 190/284 (66%), Gaps = 9/284 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPV----GALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRAF+A+PD+R + P GA+ G I ML+ L K A Y AC+FD
Sbjct: 6 TLVLVDGSSYLYRAFHAMPDLRAVPGDPTSAATGAIRGMINMLQALKKEVHADYAACVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ +YP YKA R MP +L QI IH++V+ +GWP+L IKGVEADDVIGTLA+
Sbjct: 66 ASGPTFRDAIYPDYKANRAPMPEDLRAQIEPIHEVVRLLGWPVLAIKGVEADDVIGTLAR 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + ++V+IS+ DKD++QLV + +I+ N K D +++ FGV P +VD+ +L
Sbjct: 126 AAAGQ-GMRVVISSGDKDLSQLVDEHVTIIDTMNGKRRDVAGVMAEFGVPPALMVDFQAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTA K L +Y SL+ ++ +A IKGV G+NLR AL+WLP +++
Sbjct: 185 VGDAVDNVPGVPKVGPKTAAKWLAEYGSLDALVAHAGAIKGVAGENLRGALDWLPTAREL 244
Query: 238 LTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
+TIKTDCDL+ ++ +P +++ + L + KY L
Sbjct: 245 VTIKTDCDLSGHVAGLPAMDAIAFGAEQTGNLADFYQKYGFKSL 288
>gi|167915857|ref|ZP_02502948.1| DNA polymerase I [Burkholderia pseudomallei 112]
Length = 248
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 172/236 (72%), Gaps = 3/236 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
MLR++ K+ A Y AC+FDAKGK FR+ LY YKA R MP +L LQI IH V+A+GW
Sbjct: 1 MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRT 158
P+L+I+GVEADDVIGTLAKQA +H + VI+ST DKD+AQLV++++ LIN N+ DR
Sbjct: 61 PLLMIEGVEADDVIGTLAKQA-EQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRD 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
++++FGV PE+IVDY SLIGD DN+PGV+K GPKTAVK L QY SL+ ++ +A IKG
Sbjct: 120 GVLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
V+G NLR AL++LP +K++T++T C+L ++ S SL + L ++F KY
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKY 235
>gi|167743556|ref|ZP_02416330.1| DNA polymerase I [Burkholderia pseudomallei 14]
Length = 257
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 172/236 (72%), Gaps = 3/236 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
MLR++ K+ A Y AC+FDAKGK FR+ LY YKA R MP +L LQI IH V+A+GW
Sbjct: 1 MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRT 158
P+L+I+GVEADDVIGTLAKQA +H + VI+ST DKD+AQLV++++ LIN N+ DR
Sbjct: 61 PLLMIEGVEADDVIGTLAKQA-EQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRD 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
++++FGV PE+IVDY SLIGD DN+PGV+K GPKTAVK L QY SL+ ++ +A IKG
Sbjct: 120 GVLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
V+G NLR AL++LP +K++T++T C+L ++ S SL + L ++F KY
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKY 235
>gi|167724605|ref|ZP_02407841.1| DNA polymerase I [Burkholderia pseudomallei DM98]
Length = 258
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 172/236 (72%), Gaps = 3/236 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
MLR++ K+ A Y AC+FDAKGK FR+ LY YKA R MP +L LQI IH V+A+GW
Sbjct: 1 MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRT 158
P+L+I+GVEADDVIGTLAKQA +H + VI+ST DKD+AQLV++++ LIN N+ DR
Sbjct: 61 PLLMIEGVEADDVIGTLAKQA-EQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRD 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
++++FGV PE+IVDY SLIGD DN+PGV+K GPKTAVK L QY SL+ ++ +A IKG
Sbjct: 120 GVLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
V+G NLR AL++LP +K++T++T C+L ++ S SL + L ++F KY
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKY 235
>gi|167820744|ref|ZP_02452424.1| DNA polymerase I [Burkholderia pseudomallei 91]
Length = 264
Score = 271 bits (692), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 172/236 (72%), Gaps = 3/236 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
MLR++ K+ A Y AC+FDAKGK FR+ LY YKA R MP +L LQI IH V+A+GW
Sbjct: 1 MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRT 158
P+L+I+GVEADDVIGTLAKQA +H + VI+ST DKD+AQLV++++ LIN N+ DR
Sbjct: 61 PLLMIEGVEADDVIGTLAKQA-EQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRD 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
++++FGV PE+IVDY SLIGD DN+PGV+K GPKTAVK L QY SL+ ++ +A IKG
Sbjct: 120 GVLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
V+G NLR AL++LP +K++T++T C+L ++ S SL + L ++F KY
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKY 235
>gi|167899174|ref|ZP_02486575.1| DNA polymerase I [Burkholderia pseudomallei 7894]
Length = 257
Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 172/236 (72%), Gaps = 3/236 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
MLR++ K+ A Y AC+FDAKGK FR+ LY YKA R MP +L LQI IH V+A+GW
Sbjct: 1 MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAYRPPMPPDLALQIEPIHTAVRALGW 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRT 158
P+L+I+GVEADDVIGTLAKQA +H + VI+ST DKD+AQLV++++ LIN N+ DR
Sbjct: 61 PLLMIEGVEADDVIGTLAKQA-EQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRD 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
++++FGV PE+IVDY SLIGD DN+PGV+K GPKTAVK L QY SL+ ++ +A IKG
Sbjct: 120 GVLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
V+G NLR AL++LP +K++T++T C+L ++ S SL + L ++F KY
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKY 235
>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
Length = 927
Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats.
Identities = 131/257 (50%), Positives = 180/257 (70%), Gaps = 7/257 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRAF+A+PD+R + P GA+ G I ML+ L K+Y A Y AC+FD
Sbjct: 6 TLVLVDGSSYLYRAFHAMPDLRAVPGDPASPATGAIRGMINMLQALRKDYPADYAACVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ LYP YKA R MP +L QI IHQ+V+ +GWP++ + GVEADDVIGTLA
Sbjct: 66 ASGPTFRDTLYPEYKAHRAPMPDDLRAQIEPIHQVVRLLGWPVVCVPGVEADDVIGTLAA 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + ++VI+S+ DKD++QLV I +I+ + K D + + FGV P +VDY +L
Sbjct: 126 CA-ARQGIEVIVSSGDKDLSQLVDEHITIIDTMSGKRRDVAGVTAEFGVPPSLMVDYQTL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTA K LN+Y SL+ ++ A IKGV G+NLR AL+WLPK +++
Sbjct: 185 VGDAVDNVPGVPKVGPKTAAKWLNEYGSLDGLLARAGEIKGVAGENLRNALDWLPKGREL 244
Query: 238 LTIKTDCDLTKNIVSIP 254
+TI+TDCDL ++ +P
Sbjct: 245 VTIRTDCDLAGHVEGLP 261
>gi|387131167|ref|YP_006294057.1| DNA polymerase I [Methylophaga sp. JAM7]
gi|386272456|gb|AFJ03370.1| DNA polymerase I [Methylophaga sp. JAM7]
Length = 904
Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats.
Identities = 136/274 (49%), Positives = 191/274 (69%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRA++A+P + N G +YG + MLRKL K+Y+ + +A +FDAKGK
Sbjct: 8 LILVDGSSYLYRAYHAMPPLTNSAGEATGTIYGVVNMLRKLIKDYQPSRMAVVFDAKGKT 67
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKATR MP +L Q+ IH +V A+G P+L+I GVEADDVIGTLA+QA T+
Sbjct: 68 FRHDLYSEYKATRPPMPDDLREQVTPIHDIVTAMGLPLLVIDGVEADDVIGTLARQA-TQ 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ ++ +IST DKDMAQLVS + L+N NN D + +FG+ P++I+DY +L+GD
Sbjct: 127 NGIETVISTGDKDMAQLVSEHVTLVNTMNNTKTDIAAVKEKFGLKPDQIIDYLALMGDKV 186
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV+ +GPKTA KLLNQY+SL+ +I NAN +KG +G+ LR AL LP+ + TIK
Sbjct: 187 DNIPGVESVGPKTASKLLNQYHSLQGVIENANEVKGKLGEKLRAALQDLPRSYDLATIKL 246
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D DL ++ ++L ++ D K L LF +Y+
Sbjct: 247 DVDLPVDL----DTLAIKQPDLKALSTLFEQYEF 276
>gi|387128320|ref|YP_006296925.1| DNA polymerase I [Methylophaga sp. JAM1]
gi|386275382|gb|AFI85280.1| DNA polymerase I [Methylophaga sp. JAM1]
Length = 904
Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats.
Identities = 137/274 (50%), Positives = 189/274 (68%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRA++A+P + N D G +YG I MLRKL ++Y+ ++A +FDAKGK
Sbjct: 7 LILVDGSSYLYRAYHAMPPLTNSDGEATGTIYGVINMLRKLIRDYQPEHMAVVFDAKGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN LY YKATR MP +L QI IH++VKA+G P+L I VEADDVIGTLAKQA T
Sbjct: 67 FRNDLYAEYKATRPPMPDDLREQIEPIHEIVKAMGLPLLCIDNVEADDVIGTLAKQA-TA 125
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++ +IST DKDMAQLVS + L+N NN D + +FG++P++IVDY +L+GD
Sbjct: 126 AGIETVISTGDKDMAQLVSKHVTLVNTMNNTKTDIAAVQEKFGLTPQQIVDYLALMGDKV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV +GPKTA KLL QY SL+ +I +A+ +KG +G+ LR A++ LP ++ TIK
Sbjct: 186 DNIPGVDSVGPKTATKLLQQYGSLQGVIEHADEVKGKLGEKLRAAVDALPLSYQLATIKM 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D +L PE+L +Q D + L +L+ +Y+
Sbjct: 246 DVELD----FTPETLDMQVADNQKLAELYRRYEF 275
>gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
Length = 929
Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats.
Identities = 126/247 (51%), Positives = 178/247 (72%), Gaps = 3/247 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+A+PD+R+ P GA+YG + MLR+L +Y A Y AC+FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHAMPDLRSPQGEPTGAIYGVLNMLRRLRADYPADYSACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L QI +H++V A GW IL++ GVEADDVIGTL QA +
Sbjct: 63 TFRDDWYPEYKAHRPPMPDDLRAQIEPLHEVVAAAGWNILMVDGVEADDVIGTLTHQA-S 121
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ I+ST DKD+ QLV+ + L+N +N++ D ++++FGV P +IVDY +L+GD
Sbjct: 122 SNGAHCIVSTGDKDLTQLVNPHVMLVNTMSNEVLDEAGVLAKFGVEPARIVDYLALVGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTAVK L QY +L+N++ +A+ + G +G+NLR A +WLP+ ++++T+K
Sbjct: 182 VDNVPGVAKCGPKTAVKWLTQYGTLDNLLAHADEVGGAVGENLRAARDWLPQGRRLVTVK 241
Query: 242 TDCDLTK 248
D L +
Sbjct: 242 CDVALDR 248
>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
Length = 911
Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats.
Identities = 134/274 (48%), Positives = 193/274 (70%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + + P GA+ G I M+RKL +++ + + +FDAKGK
Sbjct: 9 VVLVDGSSYLFRAYHALPPLMTSKSHPTGAIKGVISMIRKLEQDFPGSKMVVVFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN LY YKATR MP +L +QI IH MV+A+G P+LI+ GVEADDVIGTLA +A +K
Sbjct: 69 FRNDLYEDYKATRPPMPDDLAVQIQPIHDMVRAMGLPLLIVSGVEADDVIGTLAHEATSK 128
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKDMAQLVS+ + LIN + DR ++ +FG+ P++IVDY +L+GD
Sbjct: 129 -GIDVVVSTGDKDMAQLVSDHVTLINTMTDTRMDRDGVVEKFGIGPDQIVDYLALVGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTAVK L +++L+NII +++ +KG IG+ LR A LP +++ TIKT
Sbjct: 188 DNIPGVNKCGPKTAVKWLQTWDNLDNIIEHSDEVKGKIGEYLREATETLPLSRQLATIKT 247
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D DL + E L L+ +D+ L++LF +Y+L
Sbjct: 248 DVDLEFGL----EDLKLRTQDDSQLLELFREYEL 277
>gi|424776842|ref|ZP_18203817.1| DNA polymerase I [Alcaligenes sp. HPC1271]
gi|422887882|gb|EKU30276.1| DNA polymerase I [Alcaligenes sp. HPC1271]
Length = 905
Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats.
Identities = 129/277 (46%), Positives = 196/277 (70%), Gaps = 6/277 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRA++A+PD+RN P GALYG I MLR+L ++Y+A Y+ C+FDA
Sbjct: 1 MKKTLLLVDGSSYLYRAYHAMPDLRNAQGQPTGALYGVINMLRRLLQDYQADYMVCVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KG+ FR+ LY YKA R MP ++ +QI IH+ V+A+GW ++ GVEADD+IGTL++
Sbjct: 61 KGRTFRDDLYDQYKANRPSMPEDMAVQIEPIHKAVRAMGWHLICQPGVEADDIIGTLSRL 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A ++ ++ ++ST DKD+AQLV+ + L+N +N+ D + S++GV P++I+DY LI
Sbjct: 121 A-AENGIETVVSTGDKDLAQLVNEHVQLVNTMSNEKLDVEGVTSKYGVRPDQIIDYLMLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLR-FALNWLPKLKKI 237
GD SDN+PGV K+GPKTA K L +Y SL+ ++ +A+ IKGV G+NLR F+ N+ +K+
Sbjct: 180 GDTSDNIPGVPKVGPKTAAKWLGEYGSLDELLQHADKIKGVAGQNLRDFSSNF-EMTRKL 238
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+T+K DC++ E+L +P+D +L ++ +
Sbjct: 239 VTVKLDCEV-PGFTGDFEALEPEPRDNAVLQDIYETF 274
>gi|350563876|ref|ZP_08932696.1| DNA polymerase I [Thioalkalimicrobium aerophilum AL3]
gi|349778397|gb|EGZ32753.1| DNA polymerase I [Thioalkalimicrobium aerophilum AL3]
Length = 933
Score = 270 bits (689), Expect = 6e-70, Method: Composition-based stats.
Identities = 137/274 (50%), Positives = 193/274 (70%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RAF+ALP + N D P GA+YG M+ KL + Y+ ++A +FDAKGK
Sbjct: 9 IILVDGSSYLFRAFHALPPLTNKDGHPTGAIYGVTNMIGKLLETYQPEFMAVVFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN LYP YKA R MP +L +QI IHQ+VKA+G P+L+I+GVEADDVIGTLA QA T+
Sbjct: 69 FRNDLYPEYKAHRPPMPDDLRVQIEPIHQIVKALGLPLLVIEGVEADDVIGTLAVQA-TQ 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+IST DKDMAQLV+ I LIN NN + + ++ +FG+ P++I+DY +L+GD S
Sbjct: 128 AQRDALISTGDKDMAQLVNEHITLINTMNNTLMTQDKVVEKFGIRPDQIIDYLALMGDSS 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K GPKTAVK L Y++++N+I +AN+IKG IG+ LR + LP + + TI+T
Sbjct: 188 DNIPGIPKCGPKTAVKWLTAYDTMDNLIAHANDIKGKIGETLREHIPHLPLSRTLTTIRT 247
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
DC+L +++P+ L D + L LF +Y+
Sbjct: 248 DCELP---INLPD-LKRDEADIETLKTLFAEYEF 277
>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 927
Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats.
Identities = 134/284 (47%), Positives = 187/284 (65%), Gaps = 9/284 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRAF+A+PD+R + P GA+ G I ML+ L ++Y A Y AC+FD
Sbjct: 6 TLVLVDGSSYLYRAFHAMPDLRAVPGDPASPATGAIRGMINMLQALRRDYPADYAACVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ LYP YKA R MP +L QI IHQ+V+ +GWP++ + GVEADDVIGTLA
Sbjct: 66 ASGPTFRDTLYPEYKAHRAPMPDDLRAQIEPIHQVVRLMGWPVVCVPGVEADDVIGTLAA 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + ++VI+S+ DKD++QLV I +I+ + K D + + FGV P +VDY +L
Sbjct: 126 CA-ARQGIEVIVSSGDKDLSQLVDEHITIIDTMSGKRRDVAGVTAEFGVPPTLMVDYQTL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTA K LN+Y SL+ ++ A IKGV G+NLR AL WLPK +++
Sbjct: 185 VGDAVDNVPGVPKVGPKTAAKWLNEYGSLDGLLARAGEIKGVAGENLRGALEWLPKGREL 244
Query: 238 LTIKTDCDLTKNIVSIPE--SLILQPKDEKLLMQLFNKYKLNKL 279
+TI+TDCDL ++ +P+ + + D L + Y L
Sbjct: 245 VTIRTDCDLAGHVDGLPDLAGVAMGASDNAALRDFYQAYGFKGL 288
>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
Length = 921
Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats.
Identities = 132/284 (46%), Positives = 189/284 (66%), Gaps = 9/284 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPV----GALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRAF+A+PD+R + P GA+ G I ML+ L K A Y AC+FD
Sbjct: 6 TLVLVDGSSYLYRAFHAMPDLRAVPGDPTSAATGAIRGMINMLQALKKEVHADYAACVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ +YP YKA R MP +L QI IH++V+ +GWP+L I+GVEADDVIGTLA+
Sbjct: 66 ASGPTFRDAIYPDYKANRAPMPEDLRAQIEPIHEVVRLLGWPVLAIEGVEADDVIGTLAR 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + ++V+IS+ DKD++QLV + +I+ N K D + + FGV P +VD+ +L
Sbjct: 126 AAAGQ-GMRVVISSGDKDLSQLVDEHVTIIDTMNGKRRDVAGVTAEFGVPPALMVDFQAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTA K L +Y SL+ ++ +A IKGV G+NLR AL+WLP +++
Sbjct: 185 VGDAVDNVPGVPKVGPKTAAKWLAEYGSLDALVAHAGAIKGVAGENLRGALDWLPTAREL 244
Query: 238 LTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
+TIKTDCDL+ ++ +P +++ + L + KY L
Sbjct: 245 VTIKTDCDLSGHVAGLPAMDAIAFSAEQTGNLADFYQKYGFKSL 288
>gi|350570591|ref|ZP_08938943.1| DNA-directed DNA polymerase I [Neisseria wadsworthii 9715]
gi|349795793|gb|EGZ49587.1| DNA-directed DNA polymerase I [Neisseria wadsworthii 9715]
Length = 928
Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats.
Identities = 142/283 (50%), Positives = 193/283 (68%), Gaps = 10/283 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRAF+A+ + D P GALYG + MLR+L +Y Y A +FDAK
Sbjct: 3 QQTLLLVDGSSYLYRAFHAMAPLTAPDGTPTGALYGVLNMLRRLRADYVHDYCAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G+NFR+ +YP YKATR MP L Q ++ +MV+ +GWP+LI+ VEADDVIGTLAKQ
Sbjct: 63 GENFRHKMYPDYKATRPPMPDELRPQAEMLPEMVRLMGWPVLIVPDVEADDVIGTLAKQG 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLVS + L+N +N+ D + ++FGV P++I+DY +LIG
Sbjct: 123 -EEAGWNVVISTGDKDMAQLVSEHVTLVNTMSNEKLDIDGVKNKFGVHPDQIIDYLTLIG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K GPKTAVK L+QY +L+N+++NA+ IKG +G+NL+ AL LP +++T
Sbjct: 182 DKVDNVPGVDKCGPKTAVKWLDQYGTLQNVMDNASEIKGKVGENLQAALPQLPLSYQLVT 241
Query: 240 IKTDCDLTKNIVSIPESL-ILQPKDEKLLMQLFNKYKLNKLNF 281
IKTD DL ++ ESL PK +L ++ +LNF
Sbjct: 242 IKTDVDLHNDMDDGLESLRRTTPKWSQLAVE------FKRLNF 278
>gi|345864936|ref|ZP_08817131.1| DNA polymerase I [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345124016|gb|EGW53901.1| DNA polymerase I [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 899
Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats.
Identities = 135/280 (48%), Positives = 192/280 (68%), Gaps = 7/280 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q +LVDGSS ++RAF+ALP + N P GA+ G I MLR+L +Y+ ++A +FDA
Sbjct: 4 QKPFILVDGSSYLFRAFHALPPLTNSKGEPTGAIVGVINMLRRLIDDYQPEHMAVVFDAP 63
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G +FRN LYP YKA R MP L QI +HQ+V+A+G P+L+I GVEADDVIGTLA+QA
Sbjct: 64 GGSFRNQLYPDYKANRPPMPEELRQQIEPLHQIVRAMGLPLLMIPGVEADDVIGTLAQQA 123
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ +IST DKDMAQLV+ ++ALIN + DR ++++FGV+PE+I+DY +L+G
Sbjct: 124 -AQLGMQTLISTGDKDMAQLVNAQVALINTMSESYTDRDGVVAKFGVTPEQIIDYLALVG 182
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D +DN+PGV K GPKTA K L QY L+N+I +A+ IKG IG+NLR +L LP +++ T
Sbjct: 183 DSADNIPGVPKCGPKTAAKWLGQYGDLDNLIAHADEIKGKIGENLRASLEQLPLSRQLAT 242
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
IK D L + P+ D ++L Q +++ + N+L
Sbjct: 243 IKLDVALEQG----PDGYRPTEPDREILRQHYSRMESNRL 278
>gi|451936499|ref|YP_007460353.1| DNA polymerase I [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777422|gb|AGF48397.1| DNA polymerase I [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 901
Score = 269 bits (688), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 133/279 (47%), Positives = 191/279 (68%), Gaps = 3/279 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M LLL+DGSS +YRAFYA+PD+RN P GA+YG I M+RKL +Y YIAC+FD+
Sbjct: 1 MPEKLLLLDGSSYLYRAFYAMPDLRNSSGEPTGAIYGVINMVRKLLFDYNTNYIACVFDS 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
K FR ++PSYKA R MP +LI Q I+++++A+G PI EADD+IG++A +
Sbjct: 61 SEKTFRKEIFPSYKANRAHMPEDLIKQTKYIYKIIEALGLPIYYSNNFEADDIIGSIAAK 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
+L ++IS+ DKD++QLV+N+++++N NN++ D + +FGV P I+DY LI
Sbjct: 121 ISKISDLDIVISSGDKDLSQLVNNRVSIVNTMNNEVLDEKGVTKKFGVPPHLIIDYLMLI 180
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGVK IGPKTAVKLLN+Y SL+NII N I G+IG NLR ++ +K+L
Sbjct: 181 GDSVDNIPGVKNIGPKTAVKLLNKYGSLDNIILNIKEITGLIGINLRDFIDRFELTRKLL 240
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLN 277
TIK DCDL +I S E +++P + +L+ L+ K++ +
Sbjct: 241 TIKCDCDLITSINS-KEDFLIKPVNNNVLIDLYTKFEFS 278
>gi|222111840|ref|YP_002554104.1| DNA polymerase I [Acidovorax ebreus TPSY]
gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
Length = 922
Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats.
Identities = 135/284 (47%), Positives = 188/284 (66%), Gaps = 9/284 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNID----NFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRAF+A+PD+R + + P GA+ G I ML+ L K A Y AC+FD
Sbjct: 6 TLVLVDGSSYLYRAFHAMPDLRAVPGDPASAPTGAIRGMINMLQALKKEVPADYAACVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ LYP YK R MP +L QI IH++V+ +GWP+L I GVEADDVIGTLA
Sbjct: 66 ASGPTFRDALYPEYKQHRAPMPDDLRAQIEPIHEVVRLLGWPVLCIPGVEADDVIGTLAA 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + ++V+IS+ DKD++QLV+ I +I+ N K D + + FGV P +VDY +L
Sbjct: 126 TAAGQ-GMQVVISSGDKDLSQLVNEHITIIDTMNGKKRDVAGVTAEFGVPPTLMVDYQAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTA K L +Y SL+ ++ NA IKGV G+NLR AL+WLP + +
Sbjct: 185 VGDAVDNVPGVPKVGPKTAAKWLTEYGSLDALLANAGAIKGVAGENLRGALDWLPTARTL 244
Query: 238 LTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
+TIKTDCDL ++ +P +++ + + +L + KY L
Sbjct: 245 VTIKTDCDLAGHLDGLPAIDAIAVGAEQADVLRDFYQKYGFKSL 288
>gi|334132161|ref|ZP_08505922.1| DNA polymerase I [Methyloversatilis universalis FAM5]
gi|333442807|gb|EGK70773.1| DNA polymerase I [Methyloversatilis universalis FAM5]
Length = 908
Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats.
Identities = 137/279 (49%), Positives = 189/279 (67%), Gaps = 8/279 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+ALPD+RN P GAL G I MLR+L +Y+A Y A +FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHALPDLRNAQGEPTGALRGVINMLRRLAADYKAEYRAVVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR YP YK R MP +L QI IH+ V+A+GWP+L+++GVEADDVIGTLA A T
Sbjct: 63 TFREDWYPDYKGHRPPMPEDLAAQIAPIHEAVRALGWPLLMVEGVEADDVIGTLAAHA-T 121
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + +IST DKD+AQLV+ + L+N + + D ++++FGV P IVDY +LIGD
Sbjct: 122 ERGIDCVISTGDKDLAQLVNRHVTLVNTMSEEKLDEAGVLAKFGVPPSAIVDYLALIGDS 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQY-NSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV K GPKTAVK L QY +L+ +I +A +I G +G+NLR L++LP +++LT+
Sbjct: 182 VDNVPGVDKCGPKTAVKWLQQYGGTLDAVIAHAADIGGKVGENLRAHLDFLPMARRLLTV 241
Query: 241 KTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
K D +L + + ESL ++ + L ++ +Y L
Sbjct: 242 KCDVELPQPL----ESLTSDGENAEALRPIYERYGFRGL 276
>gi|429462710|ref|YP_007184173.1| DNA polymerase I [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|451811535|ref|YP_007447990.1| DNA polymerase I [Candidatus Kinetoplastibacterium crithidii
TCC036E]
gi|429338224|gb|AFZ82647.1| DNA polymerase I [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|451776693|gb|AGF47692.1| DNA polymerase I [Candidatus Kinetoplastibacterium crithidii
TCC036E]
Length = 892
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 133/249 (53%), Positives = 180/249 (72%), Gaps = 2/249 (0%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M +LLLVDGSS +YRAFYALP+++N GA+YG + MLRKL Y Y ACIFDA
Sbjct: 1 MSESLLLVDGSSYLYRAFYALPELKNSKGDHTGAIYGIVSMLRKLLSKYETNYFACIFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GKNFR+ + SYK+ R MP +LI QI+ I+Q++KA+G P+ IKGVEADDVIGT++
Sbjct: 61 PGKNFRHDICSSYKSNRPLMPQDLINQIDKIYQIIKALGLPVFSIKGVEADDVIGTISDL 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
K+ +VII+T DKD+AQLV+ K+ LIN N ++ D + ++ +FGVSP I+DY LI
Sbjct: 121 FSKKYECQVIIATGDKDLAQLVNKKVKLINTMNEEVLDESGVLKKFGVSPSLIIDYLMLI 180
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV KIGPKTA+KLL+++ S+ENII + + I GVIGKN+R + +K++
Sbjct: 181 GDSVDNIPGVAKIGPKTALKLLSEFGSVENIIASVDKITGVIGKNIRDFIPNFINTRKLI 240
Query: 239 TIKTDCDLT 247
TIK DC+L+
Sbjct: 241 TIKRDCNLS 249
>gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens]
gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens]
Length = 896
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 137/272 (50%), Positives = 191/272 (70%), Gaps = 7/272 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ L+L+DGSS +RAF+ALP + N P GA+YG M++K+ K+Y+ IA +FDA
Sbjct: 1 MKPPLILIDGSSYFFRAFHALPPLTNSKGLPTGAIYGVANMIKKIIKDYQPEEIAVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ YP YKA R MP L Q + Q+++A+G P+LII GVEADDVIGTLAKQ
Sbjct: 61 KGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGTLAKQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ + V+IST DKDMAQLV+ ++LIN +N D + ++FGV+PE+I+DY +LI
Sbjct: 121 A-TEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK L +Y +L+N++++AN I G IG+ LR ++ LP KK++
Sbjct: 180 GDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLDHANEIGGKIGEYLRASIPHLPLSKKLV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQL 270
TIKTD DL N+ L+ +P D + L++L
Sbjct: 240 TIKTDLDLPLNL----NQLMPKPADREQLIKL 267
>gi|358635639|dbj|BAL22936.1| DNA polymerase I [Azoarcus sp. KH32C]
Length = 911
Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats.
Identities = 130/274 (47%), Positives = 188/274 (68%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
LLLVDGSS +YRAF+ALPD+RN P GA+ G + MLR+L +Y+A + AC+FDAKGK
Sbjct: 4 LLLVDGSSYLYRAFHALPDLRNSKGEPTGAIRGVLSMLRRLEADYKAEFRACVFDAKGKT 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ YP YK+ R MP +L LQI +H+ VKA GWP+L + GVEADDVIGTL +QA+ +
Sbjct: 64 FRDDWYPEYKSHRPPMPDDLRLQIEPLHEAVKAEGWPLLCVDGVEADDVIGTLTRQALER 123
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+V+IST DKD+ QLV + +N + ++ D + +FGV+PE+IVDY +L+GD
Sbjct: 124 -GWEVVISTGDKDLTQLVRPGVKWVNTMSEEVLDEAGVAEKFGVTPERIVDYLALVGDTV 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV+K GPKTAVK L +Y +L+N++ NA+ + G +G+NLR L +LP +K++T+ T
Sbjct: 183 DNVPGVEKCGPKTAVKWLTEYGTLDNLVANADKVGGKVGENLRKHLEFLPLGRKLVTVAT 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L + +P + D+ L L+ +++
Sbjct: 243 DIALPVALEDLPA----REDDKAALRALYERFEF 272
>gi|337278920|ref|YP_004618391.1| DNA polymerase I [Ramlibacter tataouinensis TTB310]
gi|334729996|gb|AEG92372.1| Candidate DNA polymerase I [Ramlibacter tataouinensis TTB310]
Length = 954
Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats.
Identities = 132/283 (46%), Positives = 191/283 (67%), Gaps = 9/283 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACIFDA 60
LLLVDGSS +YRAF+A+PD+R + P GA+ G I M++KL ++ RA Y AC+FDA
Sbjct: 28 LLLVDGSSYLYRAFHAMPDLRAVPGDPGSPATGAIRGMINMMQKLRRDVRADYAACVFDA 87
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GK FR+ LYP YKA R MP +L QI IH++V+ +GW +L + GVEADDVIGTL+
Sbjct: 88 PGKTFRDDLYPGYKANRSAMPDDLRAQIEPIHEVVRLLGWKVLNVPGVEADDVIGTLSCM 147
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ + +IS+ DKD++QLV++ + +I+ N+K+ D + + FGV P +VDY L+
Sbjct: 148 A-TERGIHTVISSGDKDLSQLVNDHVKVIDTMNDKVRDVAGVEAEFGVPPRLMVDYQVLV 206
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVKLL +Y SL+ ++ A +KG +G+NLR AL WLP +++L
Sbjct: 207 GDSVDNVPGVDKVGPKTAVKLLQEYGSLDALVERAAEVKGAVGENLRKALPWLPTGRELL 266
Query: 239 TIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
TI+ CDL +I +P E +++ +D + L + +Y L
Sbjct: 267 TIRKSCDLRDHIPGLPELEDIVIGGQDTEKLKAFYERYGFKGL 309
>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
Length = 922
Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats.
Identities = 135/284 (47%), Positives = 187/284 (65%), Gaps = 9/284 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNID----NFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRAF+A+PD+R + + P GA+ G I ML+ L K A Y AC+FD
Sbjct: 6 TLVLVDGSSYLYRAFHAMPDLRAVPGDPASAPTGAIRGMINMLQALKKEVPADYAACVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ LYP YK R MP +L QI IH++V+ +GWP+L I GVEADDVIGTLA
Sbjct: 66 ASGPTFRDALYPEYKQHRAPMPDDLRAQIEPIHEVVRLLGWPVLCIPGVEADDVIGTLAA 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + ++V+IS+ DKD++QLV+ I +I+ N K D + + FGV P +VDY +L
Sbjct: 126 TAAGQ-GMQVVISSGDKDLSQLVNENITIIDTMNGKKRDVAGVTAEFGVPPTLMVDYQAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTA K L +Y SL+ ++ NA IKGV G+NLR AL+WLP + +
Sbjct: 185 VGDAVDNVPGVPKVGPKTAAKWLTEYGSLDALLANAGAIKGVAGENLRGALDWLPTARML 244
Query: 238 LTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
+TIKTDCDL ++ +P +++ + + L + KY L
Sbjct: 245 VTIKTDCDLAGHLDGLPAIDAIAVGAEQADALRDFYQKYGFKSL 288
>gi|451823117|ref|YP_007459391.1| DNA polymerase I [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
gi|451775917|gb|AGF46958.1| DNA polymerase I [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
Length = 899
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 188/276 (68%), Gaps = 9/276 (3%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M +LLLVDGSS +YRAFYALPD+RN P GA+YG I MLRKL Y Y C+FDA
Sbjct: 2 MDESLLLVDGSSYLYRAFYALPDLRNSKGEPTGAIYGVISMLRKLIMEYDPKYFVCVFDA 61
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GK FRN + YK+ R MP L+ QI+ IHQ++ A+G +L + GVEADDVIGT+AK
Sbjct: 62 PGKTFRNDISSDYKSNRPSMPEELVFQIDKIHQIINALGLFVLSVNGVEADDVIGTIAKT 121
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A NL+VIIST DKD+AQLV++KI +IN N +I D ++ +FGV+P IVDY L+
Sbjct: 122 ASKLDNLQVIISTGDKDLAQLVNSKIRIINTMNGEILDNAGVLKKFGVNPALIVDYLMLV 181
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL---K 235
GD DN+PGV KIGPKTA+KLLN++ +++NII +A+ IKG++G NL + ++P K
Sbjct: 182 GDSVDNIPGVPKIGPKTAIKLLNEFGNIDNIILSADKIKGIVGANL---IKFIPNFTITK 238
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
++LTIK DC L+ I E +P + LL L+
Sbjct: 239 ELLTIKCDCILSSYFEKI-EDFSRKPLNINLLKDLY 273
>gi|406939826|gb|EKD72766.1| hypothetical protein ACD_45C00589G0003 [uncultured bacterium]
Length = 898
Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 138/265 (52%), Positives = 182/265 (68%), Gaps = 6/265 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRAF+ALP + N FP GA+YG I ML++L Y YIA IFD+K K
Sbjct: 9 LILVDGSSYLYRAFHALPSLSNSKGFPTGAIYGVINMLQRLLTQYEPNYIAVIFDSKEKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR LY YKA R MP LI QI IH++++A+G P+LI +GVEADDVIGTLAKQA
Sbjct: 69 FRETLYEHYKANRPPMPNELIQQIAPIHEVIRALGIPLLIEEGVEADDVIGTLAKQA-KN 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ ++ +IST DKD+AQLV LIN + I + T++ +FG+ PE IVDY +L+GD
Sbjct: 128 YGMETLISTGDKDLAQLVDTHTTLINTMTDTILNPQTVVEKFGIPPECIVDYLALVGDTV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV ++GPKTAVK L +Y SL+NII NA+ +KG +G+NLR +L LP + + TIK
Sbjct: 188 DNIPGVPQVGPKTAVKWLLEYGSLDNIIANADQVKGKVGENLRASLIQLPLARTLATIKL 247
Query: 243 DCDLTKNIVSIPESLILQPKDEKLL 267
D +L +I + +L P EKLL
Sbjct: 248 DVNLKISIDDLQRTL---PDTEKLL 269
>gi|406979046|gb|EKE00901.1| hypothetical protein ACD_21C00255G0003 [uncultured bacterium]
Length = 896
Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 133/273 (48%), Positives = 189/273 (69%), Gaps = 7/273 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TL+L+DGSS ++RAF ALP + P GA+YG + M++K+ +Y+ +IA IFDAK
Sbjct: 6 QKTLVLIDGSSYLHRAFRALPPLTTSKGNPTGAVYGVVNMIKKMISDYKPDHIAVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GKNFR+ +YP YKATR M +L +QI +H+++KA+G P+L+I G EADDVIGTLA++A
Sbjct: 66 GKNFRHEMYPQYKATRPPMEEDLKVQIEPLHEVIKAMGLPLLVIAGAEADDVIGTLARRA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV I L+N N D + +FGV+ E++ DY +L+G
Sbjct: 126 AKK-DFAVLISTGDKDMAQLVDKNITLVNTMTNTAMDEQGVQKKFGVTAERMTDYLTLVG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D SDN+PGV +GPKTAVK L+++ +LENII NA+ IKG +G+NLR +L+ LP +K++T
Sbjct: 185 DTSDNIPGVNGVGPKTAVKWLDEHGTLENIIKNADLIKGKVGENLRASLDQLPLTRKLVT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFN 272
IK D +L + L + D + L++LF
Sbjct: 245 IKDDLELDVGF----DDLSPRASDNQKLIELFT 273
>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
Length = 957
Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats.
Identities = 136/284 (47%), Positives = 191/284 (67%), Gaps = 9/284 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNI----DNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
TLLLVDGSS +YRAF+A+PD+R + + P GA+ G I ML+ L K A Y ACIFD
Sbjct: 14 TLLLVDGSSYLYRAFHAMPDLRAVPGDPSSAPTGAIRGMINMLQSLRKEVPADYAACIFD 73
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
KG FR+ LYP YKA R MP +L QI IH++V+ +GW +L + GVEADDVIGTLA
Sbjct: 74 DKGPTFRDALYPEYKAHRSPMPDDLRSQIEPIHEVVRLMGWKVLAVPGVEADDVIGTLAV 133
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + ++VI+S+ DKD+AQLV++ I +I+ N + D + + FGV P+ +VD+ +L
Sbjct: 134 TA-ARQGIEVIVSSGDKDLAQLVNSHITIIDTMNGRRRDVAGVEAEFGVPPQLMVDFQTL 192
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD+ DN+PGV K+GPKTA K L +Y SL+ ++ NA+ IKGV+G+NL+ +L+WLP +++
Sbjct: 193 VGDVIDNVPGVPKVGPKTAAKWLQEYGSLDAVVANADQIKGVVGENLKKSLDWLPLGRQL 252
Query: 238 LTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
LTIKTDCDL + +P +S+ D L + KY L
Sbjct: 253 LTIKTDCDLDGWMPDLPALDSIATGTMDTGALAIFYEKYGFKGL 296
>gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378776058|ref|YP_005184486.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|364506863|gb|AEW50387.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila ATCC
43290]
Length = 896
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 137/272 (50%), Positives = 190/272 (69%), Gaps = 7/272 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ L+L+DGSS +RAF+ALP + N P GA+YG M++K+ K+Y+ IA +FDA
Sbjct: 1 MKPPLILIDGSSYFFRAFHALPPLTNSKGQPTGAIYGVANMIKKIIKDYQPEEIAVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ YP YKA R MP L Q + Q+++A+G P+LII GVEADDVIGTLAKQ
Sbjct: 61 KGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGTLAKQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ + V+IST DKDMAQLV+ ++LIN +N D + ++FGV+PE+I+DY +LI
Sbjct: 121 A-TEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK L +Y +L+N++ +AN I G IG+ LR ++ LP KK++
Sbjct: 180 GDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGKIGEYLRASIPHLPLSKKLV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQL 270
TIKTD DL N+ L+ +P D + L++L
Sbjct: 240 TIKTDLDLPLNL----NQLMPKPADSEQLIKL 267
>gi|397662653|ref|YP_006504191.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Legionella pneumophila subsp.
pneumophila]
gi|395126064|emb|CCD04242.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Legionella pneumophila subsp.
pneumophila]
Length = 896
Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 137/272 (50%), Positives = 190/272 (69%), Gaps = 7/272 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ L+L+DGSS +RAF+ALP + N P GA+YG M++K+ K+Y+ IA +FDA
Sbjct: 1 MKPPLILIDGSSYFFRAFHALPPLTNSKGQPTGAIYGVANMIKKIIKDYQPEEIAVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ YP YKA R MP L Q + Q+++A+G P+LII GVEADDVIGTLAKQ
Sbjct: 61 KGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGTLAKQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ + V+IST DKDMAQLV+ ++LIN +N D + ++FGV+PE+I+DY +LI
Sbjct: 121 A-TEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK L +Y +L+N++ +AN I G IG+ LR ++ LP KK++
Sbjct: 180 GDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGKIGEYLRASIPHLPLSKKLV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQL 270
TIKTD DL N+ L+ +P D + L++L
Sbjct: 240 TIKTDLDLPLNL----NQLMPKPADSEQLIKL 267
>gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
Length = 977
Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats.
Identities = 131/284 (46%), Positives = 196/284 (69%), Gaps = 13/284 (4%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYR----ATYIACIFD 59
TLLLVDGSS ++RA++ALPD+RN P GA++G + MLR+L + R AT A IFD
Sbjct: 6 TLLLVDGSSYLFRAYHALPDLRNKAGEPTGAIHGMVGMLRRLRDDTRLHGGATLGAVIFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G+ FR+ LY YKA R + P L+ QI IH++ +A+GWP+L++ G+EADDVIGTLA
Sbjct: 66 APGRTFRDDLYEYYKANRSQTPEALVAQIAPIHELTQALGWPLLVVPGIEADDVIGTLAT 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALINN-------NKIHDRTTIISRFGVSPEKIV 172
+A ++ +IST DKD+AQLV ++ L+N + D + +FGV P +I+
Sbjct: 126 RARAA-GMRTVISTGDKDLAQLVDDETLLVNTMTRDGVPPTVMDAAGVRDKFGVDPGQII 184
Query: 173 DYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLP 232
D+ +L GD DN+PGV K+GPKTA K LN+Y SL+ I+ +A+ IKG +G+NLR A +WLP
Sbjct: 185 DFLTLTGDAVDNVPGVDKVGPKTAAKWLNEYGSLDAILQHADEIKGKVGENLRAARDWLP 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
+ ++++T+ D DL+ + + E+L L+P+DE+ L+ LF++++L
Sbjct: 245 RGRELVTVLRDADLSAWVGGV-ETLKLRPEDEEALLGLFDRWEL 287
>gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T]
gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T]
Length = 939
Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats.
Identities = 128/275 (46%), Positives = 190/275 (69%), Gaps = 7/275 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+ALPD+RN P GA+ G + MLR+L +Y+A + AC+FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHALPDLRNSQGEPTGAIRGVLSMLRRLESDYKAEFRACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YK+ R MP +L QI +H+ V+A GWP+L ++GVEADDVIGTL + A+
Sbjct: 63 TFRDDWYPEYKSHRPPMPDDLRAQIAPLHEAVRAEGWPLLSVEGVEADDVIGTLTRLALE 122
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ +V+IST DKD+ QLV + +N + ++ D + ++FGV PE+IVDY +L+GD
Sbjct: 123 R-GWEVVISTGDKDLTQLVRPGVRWVNTMSEEVLDEAGVAAKFGVPPERIVDYLALVGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L +Y +L+N++ NA+ + G +G+NLR L++LP +K++T+
Sbjct: 182 VDNVPGVEKCGPKTAVKWLTEYGTLDNLVANADKVGGKVGENLRRHLDFLPLGRKLVTVA 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
TD +L + +P + D+ L L+ +++
Sbjct: 242 TDVELPVGLDELPA----RADDKAALRALYERFEF 272
>gi|347818577|ref|ZP_08872011.1| DNA polymerase I, partial [Verminephrobacter aporrectodeae subsp.
tuberculatae At4]
Length = 353
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/284 (46%), Positives = 185/284 (65%), Gaps = 9/284 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNI----DNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS IYRA++A+PD+R I + GA+ G I ML+ L K +A Y ACIFD
Sbjct: 6 TLVLVDGSSYIYRAYHAMPDLRAIPGDSGSAATGAIRGMINMLQALRKEVQADYAACIFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ +YP YKA R MP +L QI IH++V+ +GW +L + GVEADDVIGTLA
Sbjct: 66 ASGPTFRDAIYPEYKAQRAPMPDDLRAQIGPIHEVVRLLGWTVLAVGGVEADDVIGTLAV 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + ++VI+S+ DKD++QLV+ I +I+ + K D + + FGV P +VDY +L
Sbjct: 126 VAAAQ-GIEVIVSSGDKDLSQLVNEHITIIDTMSGKKRDVAGVSAEFGVPPRLMVDYQTL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTA K L +Y SL+ ++ A+ IKG G+NLR +WLP +++
Sbjct: 185 VGDSVDNVPGVPKVGPKTAAKWLQEYGSLDALLARASEIKGAAGENLRNTRDWLPTGRRL 244
Query: 238 LTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
LTIKTDCDL+ ++ +P ++L + L + KY L
Sbjct: 245 LTIKTDCDLSADLPDLPVLDALTVADAQTGGLRAFYEKYGFKSL 288
>gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
Length = 941
Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats.
Identities = 134/286 (46%), Positives = 190/286 (66%), Gaps = 9/286 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACI 57
+ TLLLVDGSS +YRAF+A+PD+R P GA+ G + M++KL K+ RA Y C+
Sbjct: 5 KKTLLLVDGSSYLYRAFHAMPDLRVTPGDPQSPATGAIRGMVNMMQKLRKDVRADYAVCV 64
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDAKG FR+ LYP YKA R MP +L Q+ IH++V+ +GW +L + GVEADDVIGTL
Sbjct: 65 FDAKGPTFRDALYPEYKAQRSAMPDDLRSQVEPIHEVVQLLGWKVLAVPGVEADDVIGTL 124
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
A A + ++VIIS+ DKD++QLV I +I+ N++ D + + FGV P +VDY
Sbjct: 125 ACMA-SSQQIEVIISSGDKDLSQLVDEHITVIDTMNDRRRDLAGVEAEFGVPPRLMVDYQ 183
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L+GD DN+PGV K+GPKTAVK L +Y SL+ ++ A IKG++G+NLR +L+WLPK +
Sbjct: 184 TLVGDTVDNVPGVPKVGPKTAVKWLLEYGSLDALVARAGEIKGIVGENLRKSLDWLPKGR 243
Query: 236 KILTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
++LTIK DC+L I +P +S+ + + L + KY L
Sbjct: 244 ELLTIKKDCELADYIDGLPAMDSIAIGAQQTSALRTFYLKYGFKGL 289
>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
Length = 902
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/274 (46%), Positives = 195/274 (71%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS ++RA+YALP + N P GA+YG I MLRKL Y+ Y+A +FD KGK
Sbjct: 16 LILIDGSSYLFRAYYALPPLTNRKGQPTGAMYGVINMLRKLMVEYQPDYVAVVFDPKGKT 75
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY +YKA R +MP L QI + ++++A+G+P++I +G EADDVI TLAK+A K
Sbjct: 76 FRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIATLAKKAKEK 135
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKD+AQ+V+ + L+N +++ + ++ +FGV PEKI+DY +L GD +
Sbjct: 136 -GMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTLTGDTT 194
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTAVK L+QY+S+EN+I +AN IKG +G+NLR ++ LP +++++T+ +
Sbjct: 195 DNIPGVPKVGPKTAVKWLSQYDSVENLIKHANEIKGKVGENLRACIDDLPLMRRLVTVIS 254
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L +N P LI K+ + L++LF +Y+
Sbjct: 255 DLPLEEN----PTDLIQTEKNREKLIELFTEYEF 284
>gi|358450341|ref|ZP_09160805.1| DNA polymerase I [Marinobacter manganoxydans MnI7-9]
gi|357225459|gb|EHJ03960.1| DNA polymerase I [Marinobacter manganoxydans MnI7-9]
Length = 910
Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats.
Identities = 132/274 (48%), Positives = 191/274 (69%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + + P GA+ G I MLR+L +++ + + +FDAKGK
Sbjct: 9 VVLVDGSSYLFRAYHALPPLTTSKDHPTGAIKGVISMLRRLEQDFPGSKMVVVFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L QI IH++VKA+G P+L + GVEADDVIGTLA +A +K
Sbjct: 69 FRHDLYEEYKANRPPMPEDLACQIEPIHEIVKAMGLPLLTVTGVEADDVIGTLANEATSK 128
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKDMAQLVS+ + LIN DR ++ +FGV+PE+IVDY +L+GD
Sbjct: 129 -GIDVVVSTGDKDMAQLVSDHVTLINTMTETRMDRDGVVEKFGVTPEQIVDYLALVGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTAVK L Y++L+N+I +A+ IKG IG+ LR A LP +++ TI+T
Sbjct: 188 DNIPGVNKCGPKTAVKWLQSYDNLDNVIEHADEIKGKIGEYLRDATETLPLSRELATIRT 247
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D +L + E L L+ +D++ L++LF +Y+
Sbjct: 248 DVELDFGL----EDLKLREQDDQQLLELFREYEF 277
>gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis]
Length = 931
Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats.
Identities = 128/284 (45%), Positives = 190/284 (66%), Gaps = 9/284 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNI----DNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRAF+A+PD+R + + P GA+ G + ML+ L K+ A Y C+FD
Sbjct: 6 TLVLVDGSSYLYRAFHAMPDLRAVPGDPSSSPTGAIRGMVNMLQALKKDVVADYAVCVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+++YP YKA R MP L QI IH++V+ +GW +L I GVEADDVIGTLA
Sbjct: 66 ASGPTFRDVIYPEYKAHRPAMPEELRAQIEPIHEVVRLLGWAVLAIPGVEADDVIGTLAH 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + ++V++S+ DKD++QLV+ +I +I+ N K D +++ FGV P +VD+ +L
Sbjct: 126 VA-AQQGVQVVVSSGDKDLSQLVNERITIIDTMNGKKRDVAGVMAEFGVPPALMVDFQAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTA K L++Y SL+ ++ A IKGV+G+NLR L WLP +++
Sbjct: 185 VGDAVDNVPGVPKVGPKTAAKWLSEYGSLDTLMARAGEIKGVVGENLRATLGWLPTGRQL 244
Query: 238 LTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
+TI+TDCDL+ ++ +P +S+ + + L + KY L
Sbjct: 245 VTIQTDCDLSAHVAGLPALDSIAVGAQQTDALAGFYEKYGFKSL 288
>gi|349574759|ref|ZP_08886693.1| DNA-directed DNA polymerase I [Neisseria shayeganii 871]
gi|348013633|gb|EGY52543.1| DNA-directed DNA polymerase I [Neisseria shayeganii 871]
Length = 941
Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats.
Identities = 133/256 (51%), Positives = 181/256 (70%), Gaps = 5/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+A+ + D P GALYG + MLR+L +Y Y A +FDAKG+
Sbjct: 6 TLLLVDGSSYLYRAFHAMAPLTAPDGTPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGE 65
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ +YP YKATR MP L Q ++ ++V+ +GWP+LI+ VEADDVIGTLAKQ
Sbjct: 66 NFRHKMYPDYKATRPPMPDELRPQAEMLPELVRLMGWPVLIVPDVEADDVIGTLAKQG-E 124
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V+IST DKDMAQLVS + L+N +N+ D + ++FGV P++I+DY +LIGD
Sbjct: 125 EAGWNVVISTGDKDMAQLVSEHVTLVNTMSNEKLDIEGVKNKFGVRPDQIIDYLTLIGDK 184
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTAVK L+QY++L+N+++NA IKG +G+NL+ AL LP +++TIK
Sbjct: 185 VDNVPGVDKCGPKTAVKWLDQYSTLQNVMDNAYEIKGKVGENLQAALPQLPLSYQLVTIK 244
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + P+ L
Sbjct: 245 TDVDLHSEL--FPQGL 258
>gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
Length = 906
Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats.
Identities = 138/277 (49%), Positives = 187/277 (67%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRAF+ALP + N P GA+YG I MLRKL + Y +IA +FDA G+N
Sbjct: 10 LVLVDGSSFLYRAFFALPPLTNSHGEPTGAVYGVINMLRKLLQTYDGAHIAVVFDAPGRN 69
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L+ YKA R MP +L QI +HQ+V+A+G P+LI GVEADDVIGTLA+QAV +
Sbjct: 70 FRDELFEHYKAHRPPMPDDLRSQIEPLHQVVRAMGLPMLIEPGVEADDVIGTLARQAVER 129
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+V+IST DKDMAQLV +++ L N + D +I +FGV PE+IVDY +L+GD S
Sbjct: 130 -GFRVVISTGDKDMAQLVCDRVTLENTMFDSRLDVNGVIVKFGVPPERIVDYLALVGDTS 188
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTA K L +Y SL+ +I A I G G+NLR +L +P +++ TI+
Sbjct: 189 DNIPGVPKVGPKTAAKWLAEYGSLDALIARAGEIGGKTGENLRASLELIPLSRELATIR- 247
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
CDL + PESL +P D+ L +L+ + + L
Sbjct: 248 -CDLPLPLT--PESLERRPPDKAALRELYTRLEFKTL 281
>gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72]
gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72]
Length = 918
Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats.
Identities = 128/275 (46%), Positives = 187/275 (68%), Gaps = 7/275 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAF+ALPD+RN P GA+ G + MLR+L +Y+A Y AC+FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFHALPDLRNSRGEPTGAIRGVLSMLRRLESDYKAEYRACVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ YP YKA R MP +L +Q+ +H V+A GWP+L + GVEADDVIGTL +QAV
Sbjct: 63 TFRDDWYPDYKANRPSMPDDLRVQVEPLHAAVQAEGWPLLSVDGVEADDVIGTLTRQAVE 122
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ +V+IST DKD+ QLV + +N + ++ D + ++FGV PE+IVDY +L+GD
Sbjct: 123 R-GWEVVISTGDKDLTQLVRPGVRWVNTMSEEVLDEAGVTAKFGVPPERIVDYLALVGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L +Y +L+ ++ +A+ + G +G+NLR L +LP ++++T+
Sbjct: 182 VDNVPGVEKCGPKTAVKWLTEYGTLDALVASADKVGGKVGENLRKHLEFLPLGRRLVTVA 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
TD L + +P + D + L L+ +++
Sbjct: 242 TDIPLPVTLDELPA----RDDDREALKALYERFEF 272
>gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 903
Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats.
Identities = 134/274 (48%), Positives = 184/274 (67%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRAF+ALP + N P GA+YG MLRKL K+Y ++ +FDAKGK
Sbjct: 7 LVLVDGSSYLYRAFHALPPLTNSRGEPTGAVYGVANMLRKLLKDYAPEHVVVVFDAKGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP L Q+ +HQ+V+A+G P+L++ GVEADDVI TLA++ +
Sbjct: 67 FRDEMYAEYKANRPPMPDELAAQVEPLHQVVQAMGLPMLVVPGVEADDVIATLAREG-RE 125
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
H L+V+IST DKDMAQLV + L+N + D + +FGV+PE+IVDY +LIGD
Sbjct: 126 HGLEVVISTGDKDMAQLVEPGVTLVNTMTDTKMDAEGVKEKFGVAPEQIVDYLALIGDTV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTAVK L Y SL+ I+ +A IKG +G+NLR AL LP ++++T++
Sbjct: 186 DNVPGVDKVGPKTAVKWLEAYGSLDGIMEHAEEIKGKVGENLRAALGHLPLSRELVTVRR 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D +L PESL L D + L LF++ +
Sbjct: 246 DLELDVT----PESLRLGEPDRETLRALFSRLEF 275
>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii Q321]
gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii Q321]
gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
Length = 902
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 195/274 (71%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS ++RA+YALP + N P GA+YG I MLRKL Y+ Y+A +FD KGK
Sbjct: 16 LILIDGSSYLFRAYYALPPLTNRKGQPTGAMYGVINMLRKLMVEYQPDYVAVVFDPKGKT 75
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY +YKA R +MP L QI + ++++A+G+P++I +G EADDVI TLAK+A K
Sbjct: 76 FRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIATLAKKAKEK 135
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKD+AQ+V+ + L+N +++ + ++ +FGV PEKI+DY +L GD +
Sbjct: 136 -GMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTLTGDTT 194
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTAVK L+QY+S+EN+I +A+ IKG +G+NLR ++ LP +++++T+ +
Sbjct: 195 DNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKGKVGENLRACIDDLPLMRRLVTVIS 254
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L +N P LI K+ + L++LF +Y+
Sbjct: 255 DLPLEEN----PTDLIQTEKNREKLIELFTEYEF 284
>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
Length = 902
Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 195/274 (71%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS ++RA+YALP + N P GA+YG I MLRKL Y+ Y+A +FD KGK
Sbjct: 16 LILIDGSSYLFRAYYALPPLTNRKGQPTGAMYGVINMLRKLMVEYQPDYVAVVFDPKGKT 75
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY +YKA R +MP L QI + ++++A+G+P++I +G EADDVI TLAK+A K
Sbjct: 76 FRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIATLAKKAKEK 135
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKD+AQ+V+ + L+N +++ + ++ +FGV PEKI+DY +L GD +
Sbjct: 136 -GMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTLTGDTT 194
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTAVK L+QY+S+EN+I +A+ IKG +G+NLR ++ LP +++++T+ +
Sbjct: 195 DNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKGKVGENLRACIDDLPLMRRLVTVIS 254
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L +N P LI K+ + L++LF +Y+
Sbjct: 255 DLPLEEN----PTDLIQTEKNREKLIELFTEYEF 284
>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 922
Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats.
Identities = 139/278 (50%), Positives = 195/278 (70%), Gaps = 10/278 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRA---TYIACIFDA 60
TLLLVDGSS +YRAF+A+PD+R N P GAL+G + MLR+L +Y+A TY ACIFDA
Sbjct: 3 TLLLVDGSSYLYRAFHAMPDLRTTKNEPTGALHGVLNMLRRLESDYQAAGITYKACIFDA 62
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ YP YKA R MP +++ QI ++ + A+GWP+L I GVEADDVIGTLA Q
Sbjct: 63 KGKTFRDDWYPEYKANRPPMPDDMVRQIEPLNAAIAALGWPLLSIDGVEADDVIGTLATQ 122
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A ++V++ST DKD+AQLV + LIN +N+ D + ++FGV PE+IVDY +LI
Sbjct: 123 AAAA-GIEVVVSTGDKDLAQLVGPHVTLINTMSNEALDEAGVRAKFGVPPERIVDYLALI 181
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTAVK L+QY SL+ +I A I GV+G+NLR +L++LP ++++
Sbjct: 182 GDAVDNVPGVDKVGPKTAVKWLDQYGSLDGVIAAAAAIGGVVGQNLRRSLDFLPLARRLV 241
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
+++ D +L + L +P D + L++LF Y++
Sbjct: 242 SVRCDLELPLAL----RELAPRPADRERLIELFAHYEM 275
>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
Length = 902
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 195/274 (71%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS ++RA+YALP + N P GA+YG I MLRKL Y+ Y+A +FD KGK
Sbjct: 16 LILIDGSSYLFRAYYALPPLTNRKGQPTGAMYGVINMLRKLMVEYQPDYVAVVFDPKGKT 75
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY +YKA R +MP L QI + ++++A+G+P++I +G EADDVI TLAK+A K
Sbjct: 76 FRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIATLAKKAKEK 135
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKD+AQ+V+ + L+N +++ + ++ +FGV PEKI+DY +L GD +
Sbjct: 136 -GMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTLTGDTT 194
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTAVK L+QY+S+EN+I +A+ IKG +G+NLR ++ LP +++++T+ +
Sbjct: 195 DNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKGKVGENLRACIDDLPLMRRLVTVIS 254
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L +N P LI K+ + L++LF +Y+
Sbjct: 255 DLPLEEN----PTDLIQTEKNREKLIELFTEYEF 284
>gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
Length = 937
Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats.
Identities = 128/246 (52%), Positives = 178/246 (72%), Gaps = 3/246 (1%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
LLLVDGSS +YRA++ALPD+RN P GA+ G + ML+KL + + + + AC+FDAKGK
Sbjct: 9 LLLVDGSSYLYRAYHALPDLRNPAGEPTGAVRGMVAMLKKLREEFPSAHAACVFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ YP YKA R MP +L QI IH +V +GWP+L I G+EADDVIGTLA+ A +
Sbjct: 69 FRDDWYPEYKANRASMPEDLARQIAPIHAVVTLLGWPVLEIPGIEADDVIGTLARAAAAR 128
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+VI+ST DKD+AQLV + LIN + + D + +FGV PE+IVDY +L+GD
Sbjct: 129 GQ-RVIVSTGDKDLAQLVDAHVTLINTMSGERLDVAGVTEKFGVPPERIVDYLTLVGDAV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV+K+GPKTA K + ++ SL+ ++ A+ IKGV G+NLR AL+WLP ++++T+KT
Sbjct: 188 DNVPGVEKVGPKTAAKWIAEHGSLDGVMAAADAIKGVAGENLRKALDWLPLGRRLVTVKT 247
Query: 243 DCDLTK 248
DCDL++
Sbjct: 248 DCDLSE 253
>gi|167850581|ref|ZP_02476089.1| DNA polymerase I [Burkholderia pseudomallei B7210]
Length = 253
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 124/232 (53%), Positives = 168/232 (72%), Gaps = 3/232 (1%)
Query: 45 LYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILI 104
+ K+ A Y AC+FDAKGK FR+ LY YKA R MP +L LQI IH V+A+GWP+L+
Sbjct: 1 MRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLM 60
Query: 105 IKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIIS 162
I+GVEADDVIGTLAKQA +H + VI+ST DKD+AQLV++++ LIN N+ DR +++
Sbjct: 61 IEGVEADDVIGTLAKQA-EQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLA 119
Query: 163 RFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGK 222
+FGV PE+IVDY SLIGD DN+PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G
Sbjct: 120 KFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGD 179
Query: 223 NLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
NLR AL++LP +K++T++T C+L ++ S SL + L ++F KY
Sbjct: 180 NLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKY 231
>gi|395005950|ref|ZP_10389805.1| DNA polymerase I [Acidovorax sp. CF316]
gi|394316070|gb|EJE52815.1| DNA polymerase I [Acidovorax sp. CF316]
Length = 941
Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats.
Identities = 132/286 (46%), Positives = 189/286 (66%), Gaps = 9/286 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPV----GALYGTIKMLRKLYKNYRATYIACI 57
+ TL+LVDGSS +YRA++A+PD+R + P GA+ G I M++ L K A Y ACI
Sbjct: 4 KKTLVLVDGSSYLYRAYHAMPDLRAVPGDPTSAATGAIRGMINMMQALRKEVHADYAACI 63
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDA G FR+ +YP YKA R MP +L QI+ IH++V+ +GW +L I GVEADDVIGTL
Sbjct: 64 FDASGPTFRDEIYPEYKAQRAPMPDDLRAQIDPIHEVVRMLGWTVLAIPGVEADDVIGTL 123
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
A A ++ + V++S+ DKD++QLV I +I+ N K D + + FGV P +VDY
Sbjct: 124 AVTAASQ-GVDVVVSSGDKDLSQLVDEHITIIDTMNGKRRDVAGVTAEFGVPPHLMVDYQ 182
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L+GD DN+PGV K+GPKTA K L +Y SL ++ A+ IKGV G+NLR L+WLP +
Sbjct: 183 TLVGDTVDNVPGVPKVGPKTAAKWLMEYGSLAELVARAHEIKGVAGENLRNTLDWLPTGR 242
Query: 236 KILTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
K++TI+TDCDL ++IV +P +++++ + L + KY L
Sbjct: 243 KLVTIRTDCDLVEHIVGLPALDAIVIGEQQVDGLRGFYEKYGFKGL 288
>gi|398803654|ref|ZP_10562672.1| DNA polymerase I [Polaromonas sp. CF318]
gi|398095907|gb|EJL86238.1| DNA polymerase I [Polaromonas sp. CF318]
Length = 943
Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats.
Identities = 133/286 (46%), Positives = 191/286 (66%), Gaps = 9/286 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACI 57
+ TLLLVDGSS +YRAF+A+PD+R P GA+ G + M++KL K+ RA + AC+
Sbjct: 5 KKTLLLVDGSSYLYRAFHAMPDLRANPGDPASPATGAIRGMVNMMQKLRKDVRADFAACV 64
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDAKG FR+ LYP YKA R MP +L Q+ IH++V+ +GW +L + GVEADDVIGTL
Sbjct: 65 FDAKGPTFRDALYPEYKAQRSPMPDDLRSQVEPIHEVVRLLGWKVLDVPGVEADDVIGTL 124
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
A A + ++VIIS+ DKD++QLV I +I+ N++ D + + FGV P ++DY
Sbjct: 125 ACLA-SSQGIEVIISSGDKDLSQLVDENITVIDTMNDRRRDVAGVEAEFGVPPRLMIDYQ 183
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L+GD DN+PGV K+GPKTAVK L +Y SL+ ++ A IKGV+G+NLR +L+WLPK +
Sbjct: 184 ALVGDAVDNVPGVPKVGPKTAVKWLLEYGSLDALVARAGEIKGVVGENLRQSLDWLPKGR 243
Query: 236 KILTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
++LTIK DC L I +P +++ + + + L + KY L
Sbjct: 244 ELLTIKKDCALDDYIAGLPALDAIAMGGQQTEALKAFYEKYGFKGL 289
>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
Length = 902
Score = 263 bits (672), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 194/274 (70%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS ++RA+YALP + N P GA+YG I MLRKL Y+ Y+A +FD KGK
Sbjct: 16 LILIDGSSYLFRAYYALPPLTNRKGQPTGAMYGVINMLRKLMVEYQPDYVAVVFDPKGKT 75
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY +YKA R +MP L QI + ++++A+G+P++I +G EADDVI TLAK+A K
Sbjct: 76 FRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIATLAKKAKEK 135
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKD+AQ+V+ + L+N +++ + ++ +FGV PEKI+DY +L GD +
Sbjct: 136 -GMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTLTGDTT 194
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTAVK L+QY+S+EN+I +AN IKG +G+NLR ++ LP +++++ + +
Sbjct: 195 DNIPGVPKVGPKTAVKWLSQYDSVENLIKHANEIKGKVGENLRACIDDLPLMRRLVMVIS 254
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L +N P LI K+ + L++LF +Y+
Sbjct: 255 DLPLEEN----PTDLIQTEKNREKLIELFTEYEF 284
>gi|403523650|ref|YP_006659219.1| DNA polymerase I [Burkholderia pseudomallei BPC006]
gi|403078717|gb|AFR20296.1| DNA polymerase I [Burkholderia pseudomallei BPC006]
Length = 876
Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats.
Identities = 127/236 (53%), Positives = 172/236 (72%), Gaps = 3/236 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
MLR++ K+ A Y AC+FDAKGK FR+ LY YKA R MP +L LQI IH V+A+GW
Sbjct: 1 MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRT 158
P+L+I+GVEADDVIGTLAKQA +H + VI+ST DKD+AQLV++++ LIN N+ DR
Sbjct: 61 PLLMIEGVEADDVIGTLAKQA-EQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRD 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
++++FGV PE+IVDY SLIGD DN+PGV+K GPKTAVK L QY SL+ ++ +A IKG
Sbjct: 120 GVLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
V+G NLR AL++LP +K++T++T C+L ++ S SL + L ++F KY
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKY 235
>gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
Length = 876
Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats.
Identities = 127/236 (53%), Positives = 172/236 (72%), Gaps = 3/236 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
MLR++ K+ A Y AC+FDAKGK FR+ LY YKA R MP +L LQI IH V+A+GW
Sbjct: 1 MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRT 158
P+L+I+GVEADDVIGTLAKQA +H + VI+ST DKD+AQLV++++ LIN N+ DR
Sbjct: 61 PLLMIEGVEADDVIGTLAKQA-EQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRD 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
++++FGV PE+IVDY SLIGD DN+PGV+K GPKTAVK L QY SL+ ++ +A IKG
Sbjct: 120 GVLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
V+G NLR AL++LP +K++T++T C+L ++ S SL + L ++F KY
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKY 235
>gi|387812902|ref|YP_005428379.1| DNA polymerase I [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381337909|emb|CCG93956.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 965
Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats.
Identities = 129/274 (47%), Positives = 191/274 (69%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I MLR++ +++ + +FDAKGK
Sbjct: 66 VVLVDGSSYLFRAYHALPPLTTSKNHPTGAIKGVISMLRRIEQDFPGSKTVVVFDAKGKT 125
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP +L +QI IH++V+A+G P+LI+ GVEADDVIGTLA +A +K
Sbjct: 126 FRHDMYEEYKANRPPMPDDLAVQIEPIHEIVRAMGLPLLIVPGVEADDVIGTLAHEATSK 185
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKDMAQLVS+ + LIN DR ++ +FGV+PE+I+DY +L+GD
Sbjct: 186 -GIDVVVSTGDKDMAQLVSDHVTLINTMTETAMDRDGVVEKFGVTPEQIIDYLALVGDKV 244
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTAVK L Y++L+N+I +A+ IKG IG+ LR A + LP +++ TI+T
Sbjct: 245 DNIPGVNKCGPKTAVKWLQSYDNLDNLIEHADEIKGKIGEYLREATDTLPLSRELATIRT 304
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D +L + E L + +D+ L++LF +Y+
Sbjct: 305 DVELEFGL----EDLQERQQDDASLLELFKEYEF 334
>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
Length = 915
Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats.
Identities = 142/281 (50%), Positives = 187/281 (66%), Gaps = 13/281 (4%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDN---FPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+LVDGSS ++RA Y +P ++ + N GA++G I ML+ L K Y +A +FDAK
Sbjct: 8 FILVDGSSYLFRA-YHVPQLQRMTNSSGMMTGAVFGVINMLKSLIKEYEPEQMAMVFDAK 66
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN LYP YKA R MP +L QI IH++VKA+G P+L+I GVEADDVIGTLAKQA
Sbjct: 67 GKTFRNDLYPEYKANRPPMPEDLRQQIEPIHEIVKAMGLPLLVIDGVEADDVIGTLAKQA 126
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN----NNKIHDRTTIISRFGVSPEKIVDYFSL 177
K + +IST DKDMAQLVS+ + LIN N I DR +I +FGV PE+I+DY +L
Sbjct: 127 C-KEGRETLISTGDKDMAQLVSDHVTLINTMDKTNPITDRDRVIEKFGVKPEQIIDYLAL 185
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K GPKTAVK L QY SL+ +I++A+ I G IG+NLR A++ LP ++
Sbjct: 186 VGDKVDNIPGVDKCGPKTAVKWLEQYGSLQGVIDHADEIGGKIGENLREAIDRLPLSYEL 245
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIK DCDL PE L + D K L +L++ + +
Sbjct: 246 ATIKLDCDLEFK----PEQLNIGQPDLKELKKLYSDMEFRR 282
>gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
Length = 924
Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats.
Identities = 134/286 (46%), Positives = 186/286 (65%), Gaps = 9/286 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNID----NFPVGALYGTIKMLRKLYKNYRATYIACI 57
+ TLLLVDGSS +YRAF+A+PD+R + + P GA+ G I ML+ L K A Y AC+
Sbjct: 4 KKTLLLVDGSSYLYRAFHAMPDLRAVPGDPASPPTGAIRGMINMLQSLRKEVTADYAACV 63
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDAKG FR+ LYP YKA R MP +L QI IHQ+V+ +GW +L + GVEADDVIGTL
Sbjct: 64 FDAKGPTFRDALYPEYKAQRAPMPDDLRAQIEPIHQVVRLMGWAVLDVPGVEADDVIGTL 123
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
A A + ++V IS+ DKD++QLV+ I +++ N K D + + FGV P +VDY
Sbjct: 124 AVAAAAQ-GVEVFISSGDKDLSQLVNEHIVIVDTMNGKRRDVAGVTAEFGVPPALMVDYQ 182
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L+GD DN+PGV K+GPKTA K L +Y SL+ ++ + IKG G+NLR AL+WLP +
Sbjct: 183 TLVGDAVDNVPGVDKVGPKTAAKWLTEYGSLDALVARSAEIKGAAGENLRKALDWLPTGR 242
Query: 236 KILTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
++LTIKTDCDL + +P +++ + D L + +Y L
Sbjct: 243 QLLTIKTDCDLNGWVPGLPALDAVRVGEPDNAALKTFYEQYGFKGL 288
>gi|407715462|ref|YP_006836742.1| DNA polymerase I [Cycloclasticus sp. P1]
gi|407255798|gb|AFT66239.1| DNA polymerase I [Cycloclasticus sp. P1]
Length = 905
Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats.
Identities = 136/278 (48%), Positives = 185/278 (66%), Gaps = 7/278 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+ TL+LVDGSS ++RA++ALP + N A+ G ML+KL + Y Y IFDA
Sbjct: 3 EKTLVLVDGSSYLFRAYHALPLLTNSKGEYTNAILGVTNMLKKLVETYPEAYFGVIFDAP 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +YP YKA R MP L QI +HQ++KA+G P+++ GVEADDVIGTLAKQA
Sbjct: 63 GKTFRNDMYPEYKANRASMPDELREQIKPLHQLIKAMGLPLVMEPGVEADDVIGTLAKQA 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ +L V+IST DKD+AQLV+NK +LIN NN+ D + +FGVSP+ I+DY +L+G
Sbjct: 123 -EEEDLNVVISTGDKDIAQLVTNKTSLINTMNNQWLDEEGVKEKFGVSPDMIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D SDN+PGV K+GPKTA K LN Y SL+ II A+ +KG +G++LR L+ +P K+++T
Sbjct: 182 DTSDNIPGVPKVGPKTAAKWLNAYGSLDEIIARADEVKGKVGESLRDHLDAIPLSKELVT 241
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLN 277
IK D L K P LI D + L ++ + Y+ N
Sbjct: 242 IKCDVPLDK----APADLIRTQPDTETLKEMVSHYEFN 275
>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
Length = 908
Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats.
Identities = 128/274 (46%), Positives = 191/274 (69%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I MLR++ +++ + +FDAKGK
Sbjct: 9 VVLVDGSSYLFRAYHALPPLTTSKNHPTGAIKGVISMLRRIEQDFPGSKTVVVFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP +L +QI IH++V+A+G P+LI+ GVEADDVIGTLA +A +K
Sbjct: 69 FRHDMYEEYKANRPPMPDDLAVQIEPIHEIVRAMGLPLLIVPGVEADDVIGTLAHEATSK 128
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKDMAQLVS+ + LIN DR ++ +FGV+PE+I+DY +L+GD
Sbjct: 129 -GIDVVVSTGDKDMAQLVSDHVTLINTMTETAMDRDGVVEKFGVTPEQIIDYLALVGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTAVK L Y++L+N+I +++ IKG IG+ LR A + LP +++ TI+T
Sbjct: 188 DNIPGVNKCGPKTAVKWLQSYDNLDNLIEHSDEIKGKIGEYLREATDTLPLSRELATIRT 247
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D +L + E L + +D+ L++LF +Y+
Sbjct: 248 DVELEFGL----EDLQERQQDDASLLELFKEYEF 277
>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
Length = 914
Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats.
Identities = 139/278 (50%), Positives = 181/278 (65%), Gaps = 7/278 (2%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
NTL+LVDGSS +YRA++A+P + N GA+YG ML+ L +Y+ Y+A +FDAKG
Sbjct: 4 NTLILVDGSSYLYRAYHAMPSLSNSQGMLTGAVYGVTNMLKSLRADYQPIYVAIVFDAKG 63
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ LYP YK R MP L++QI+ H MV+A+G+P+L+ GVEADDVIGTLAKQA
Sbjct: 64 KKFRHELYPDYKKNRPPMPEELVVQISSTHDMVRALGFPLLMENGVEADDVIGTLAKQA- 122
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ +I +NDKD AQLV+ I LIN N D + +FG+ P IVDY SLIGD
Sbjct: 123 EAVGMQTLIFSNDKDFAQLVNESITLINTMKNTRLDVEGVTEKFGIPPALIVDYLSLIGD 182
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
SDN+PGVK IGPKTA+KLL Y SLE II N IKG + NLR AL++LP +++L I
Sbjct: 183 KSDNIPGVKTIGPKTAIKLLKNYGSLEAIIENIPQIKGKVADNLREALSYLPLTRQLLMI 242
Query: 241 KTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K D L ++ P+ L L D L +L+ K K
Sbjct: 243 KCDVPL----LNTPQQLKLTTPDVDKLRELYTKLAFKK 276
>gi|374623754|ref|ZP_09696256.1| DNA polymerase I [Ectothiorhodospira sp. PHS-1]
gi|373942857|gb|EHQ53402.1| DNA polymerase I [Ectothiorhodospira sp. PHS-1]
Length = 900
Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats.
Identities = 132/269 (49%), Positives = 180/269 (66%), Gaps = 7/269 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRAF+ALP + N P GA+YG MLRKL Y+ +++A IFDAKG+
Sbjct: 7 LILVDGSSYLYRAFHALPPLTNSRGEPTGAVYGVAGMLRKLIGEYQPSHMAVIFDAKGRT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ +H +V+A+G P+L++ GVEADDVIGTL +QA +
Sbjct: 67 FRDDLYAEYKAHRPPMPEELSAQVAPLHALVQAMGIPMLVVAGVEADDVIGTLTRQA-RR 125
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
N++VIIST DKD+AQLV + L+N N + D + +FGV P +IVDY +L+GD
Sbjct: 126 ANMEVIISTGDKDLAQLVEPGVTLVNTMNGTVMDEAGVEEKFGVPPARIVDYLTLVGDAV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTAVK L + SL+ I+ A+ IKG +G+NLR AL WLP ++++T++
Sbjct: 186 DNVPGVDKVGPKTAVKWLKAHGSLDEIMARADEIKGKVGENLRTALAWLPLSRELVTVRC 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLF 271
D L + P L LQ D L +L
Sbjct: 246 DVALDRE----PLDLQLQGADTSQLRELL 270
>gi|406914615|gb|EKD53778.1| hypothetical protein ACD_60C00155G0005 [uncultured bacterium]
Length = 897
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 132/274 (48%), Positives = 183/274 (66%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRAF+ALP + N FP GA+YG I MLRKL Y YIA +FDAKGK
Sbjct: 8 LILVDGSSYLYRAFHALPSLTNSKGFPTGAVYGVINMLRKLLTQYEPEYIAVVFDAKGKT 67
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR +Y YKA R MP L+ QI+ IH +++A+G P+L+ +GVEADD+IGTLAKQA +
Sbjct: 68 FREEMYEKYKANRPPMPNELVQQISPIHDIIRALGIPLLMEEGVEADDIIGTLAKQA-KE 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+N+ +IST DKD+AQLV LIN + + T++ +FG+ P IVDY +L+GD
Sbjct: 127 NNMDTLISTGDKDLAQLVDPHTTLINTMTDTLLTPETVVEKFGIPPNLIVDYLALVGDTV 186
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV ++GPKTAVK L +Y SL +++ N++ IK +G+NLR +L LP K + TIK
Sbjct: 187 DNIPGVPQVGPKTAVKWLLEYGSLAHVMENSDKIKSKVGENLRASLTQLPLAKSLATIKL 246
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L N+ + + P EKL+ L+ +++
Sbjct: 247 DVPLKINLTDLKQK---APDTEKLVA-LYREFEF 276
>gi|386829462|ref|ZP_10116569.1| DNA polymerase I [Beggiatoa alba B18LD]
gi|386430346|gb|EIJ44174.1| DNA polymerase I [Beggiatoa alba B18LD]
Length = 913
Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats.
Identities = 136/271 (50%), Positives = 189/271 (69%), Gaps = 7/271 (2%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
NTL LVDGSS +YRAF+A+P + N + P GA+YG MLR L K Y+ T+ A IFDAKG
Sbjct: 5 NTLYLVDGSSYLYRAFHAMPSLSNAEGTPTGAVYGVTNMLRNLLKEYQPTHAAVIFDAKG 64
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
+ FR+ L YKATR MP L QI +IH++V+A+G+P+L + GVEADDVIGTLA+QA
Sbjct: 65 ETFRHQLSADYKATRPPMPPELAEQIPVIHEIVQAMGFPLLSVSGVEADDVIGTLARQA- 123
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ + VII T DKD+AQLV+ +I L+N NN D + +FGV+P +IVD+ SL+GD
Sbjct: 124 EQAGMSVIIFTGDKDLAQLVNAQITLVNTMNNSRLDPQGVKDKFGVTPTQIVDFLSLVGD 183
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+ GV K+G KTA K L QY+SL++I+ NA+ IKG +G+NLR AL++LP ++++TI
Sbjct: 184 KVDNVRGVDKVGEKTAAKWLAQYHSLDSIVANASEIKGKVGENLRAALSYLPLTRELVTI 243
Query: 241 KTDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
D L++ P SL L +++ L +L+
Sbjct: 244 CCDVPLSET----PLSLTLATRNDARLHELY 270
>gi|421866293|ref|ZP_16297965.1| DNA polymerase I [Burkholderia cenocepacia H111]
gi|358073876|emb|CCE48843.1| DNA polymerase I [Burkholderia cenocepacia H111]
Length = 870
Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats.
Identities = 123/236 (52%), Positives = 173/236 (73%), Gaps = 3/236 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
MLR++ K A Y AC+FDAKGK FR+ LY YKA R MP +L LQ+ IH V+A+GW
Sbjct: 1 MLRRMRKEVSAEYSACVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGW 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRT 158
P+L+++GVEADDVIGTLA++A +H + VI+ST DKD+AQLV+ ++ L+N N+ DR
Sbjct: 61 PLLMVEGVEADDVIGTLAREA-ERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRD 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
++++FGV PE+I+DY +LIGD DN+PGV+K GPKTAVK L+QY SL+ +I +A +IKG
Sbjct: 120 GVLAKFGVPPERIIDYLALIGDTVDNVPGVEKCGPKTAVKWLSQYESLDGVIAHAADIKG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
V+G NLR AL++LP +K++T+ T CDL ++ SI SL + +LL +F +Y
Sbjct: 180 VVGDNLRRALDFLPLGRKLVTVDTSCDLAPHLESIEASLKTDGEARELLRDIFARY 235
>gi|397665731|ref|YP_006507268.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Legionella pneumophila subsp.
pneumophila]
gi|395129142|emb|CCD07367.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Legionella pneumophila subsp.
pneumophila]
Length = 896
Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats.
Identities = 137/272 (50%), Positives = 190/272 (69%), Gaps = 7/272 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ L+L+DGSS +RAF+ALP + N P GA+YG M++K+ K+Y+ IA +FDA
Sbjct: 1 MKPPLILIDGSSYFFRAFHALPPLTNSKGQPTGAIYGVANMIKKIIKDYQPEEIAVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ YP YKA R MP L Q + Q+++A+G P+LII GVEADDVIGTLAKQ
Sbjct: 61 KGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGTLAKQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ + V+IST DKDMAQLV+ ++LIN +N D + ++FGV+PE+I+DY +LI
Sbjct: 121 A-TEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK L +Y +L+N++ +AN I G IG+ LR ++ LP KK++
Sbjct: 180 GDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGKIGEYLRASIPHLPLSKKLV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQL 270
TIKTD DL N+ L+ +P D + L++L
Sbjct: 240 TIKTDLDLPLNL----NQLMPKPADSEQLIKL 267
>gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
Length = 896
Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats.
Identities = 137/272 (50%), Positives = 190/272 (69%), Gaps = 7/272 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ L+L+DGSS +RAF+ALP + N P GA+YG M++K+ K+Y+ IA +FDA
Sbjct: 1 MKPPLILIDGSSYFFRAFHALPPLTNSKGQPTGAIYGVANMIKKIIKDYQPEEIAVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ YP YKA R MP L Q + Q+++A+G P+LII GVEADDVIGTLAKQ
Sbjct: 61 KGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGTLAKQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ + V+IST DKDMAQLV+ ++LIN +N D + ++FGV+PE+I+DY +LI
Sbjct: 121 A-TEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK L +Y +L+N++ +AN I G IG+ LR ++ LP KK++
Sbjct: 180 GDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGKIGEYLRASIPHLPLSKKLV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQL 270
TIKTD DL N+ L+ +P D + L++L
Sbjct: 240 TIKTDLDLPLNL----NQLMPKPADSEQLIKL 267
>gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS]
gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS]
Length = 937
Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats.
Identities = 134/286 (46%), Positives = 185/286 (64%), Gaps = 9/286 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACI 57
+ TLLLVDGSS +YRAF+A+PD+R + P GA+ G I M+ L + RA Y ACI
Sbjct: 4 KKTLLLVDGSSYLYRAFHAMPDLRAVPGDPKSPATGAIRGMINMMTALRREVRADYAACI 63
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDA GK FR+ YP YKA R MP +L QI+ IH++VK +GWP+L + VEADDVIGTL
Sbjct: 64 FDAPGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVKLLGWPVLTVPDVEADDVIGTL 123
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
AK A + ++VI+S+ DKD++QLV I +I+ N K D + + FGV P +VDY
Sbjct: 124 AKIAAAQ-GVEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPPNLMVDYQ 182
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L+GD DN+PGV+K+GPKTA K L +Y SL+ ++ A +KG G+NLR AL+ LP +
Sbjct: 183 TLVGDSVDNVPGVEKVGPKTAAKWLLEYGSLDALVERAAEVKGAAGENLRKALDKLPLSR 242
Query: 236 KILTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
K++TI+TDCDL ++ +P E L + L + K+ L
Sbjct: 243 KLVTIRTDCDLEGHVTGLPSLEGLPVGAPQTSELKPFYEKFGFKSL 288
>gi|438000056|ref|YP_007183789.1| DNA polymerase I [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451812985|ref|YP_007449438.1| DNA polymerase I [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
gi|429339290|gb|AFZ83712.1| DNA polymerase I [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451778954|gb|AGF49834.1| DNA polymerase I [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
Length = 901
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 131/279 (46%), Positives = 185/279 (66%), Gaps = 3/279 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M LLL+DGSS +YRAFYA+PD+RN P GA+YG I MLRKL + Y+AC+FD+
Sbjct: 1 MSEKLLLLDGSSYLYRAFYAMPDLRNSRGEPTGAIYGVINMLRKLLSDQDTNYVACVFDS 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
K FR ++ SYKA R MP +L+ Q I+++++A+G PI EADD+IG++ +
Sbjct: 61 SEKTFRKDIFSSYKANRSSMPDDLVKQTEYIYKIIEALGLPIYHSNSFEADDIIGSIVTK 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
+ + V+IS+ DKD++QLV+ ++++IN +N I D + +FG+ P IVDY LI
Sbjct: 121 ILEISDFNVVISSGDKDLSQLVNKRVSIINTMSNDILDEEGVARKFGIPPNLIVDYLMLI 180
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGVKKIGPKTAVKLLN+Y SL NII+N + I G+IGKNLR ++ +K+L
Sbjct: 181 GDSVDNVPGVKKIGPKTAVKLLNKYGSLNNIISNIDEIPGLIGKNLRDFIDKFEITRKLL 240
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLN 277
TIK DCDL I S E +++P L+ L+ ++ N
Sbjct: 241 TIKCDCDLGDRINS-KEDFLIKPMIYNELINLYTRFDFN 278
>gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
Length = 908
Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats.
Identities = 126/274 (45%), Positives = 185/274 (67%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
LLLVDGSS +YRAF+ALPD+R P GA+ G + MLR+L +Y+A + AC+FDAKGK
Sbjct: 4 LLLVDGSSYLYRAFHALPDLRTSKGEPTGAIRGVLSMLRRLESDYKAEFRACVFDAKGKT 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ YP YKA R MP +L Q+ +H+ VKA GWP+L + GVEADDVIGTL ++A+ +
Sbjct: 64 FRDDWYPQYKANRPSMPDDLRAQVGPLHEAVKAEGWPLLCVDGVEADDVIGTLTRRALER 123
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+V+IST DKD+ QLV + +N ++++ D + ++FGV P IVDY +L+GD
Sbjct: 124 -GWEVVISTGDKDLTQLVRPGVRWVNTMSDEVLDEAGVAAKFGVPPALIVDYLALVGDTV 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV+K GPKTAVK L +Y +L+N++ NA+ + G +G+NLR L +LP K+++T+ T
Sbjct: 183 DNVPGVEKCGPKTAVKWLTEYGTLDNLVANADKVGGKVGENLRKHLEFLPLGKRLVTVAT 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L + +P + D+ L L+ +++
Sbjct: 243 DLALPIQLEDLPA----RDDDKAALRALYERFEF 272
>gi|407710077|ref|YP_006793941.1| DNA polymerase I [Burkholderia phenoliruptrix BR3459a]
gi|407238760|gb|AFT88958.1| DNA polymerase I [Burkholderia phenoliruptrix BR3459a]
Length = 869
Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats.
Identities = 126/238 (52%), Positives = 171/238 (71%), Gaps = 3/238 (1%)
Query: 39 IKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAI 98
I MLR++ K A Y AC+FDAKGK FR+ YP YKA R MP +L QI IH V+A+
Sbjct: 2 INMLRRMRKEVTAEYSACVFDAKGKTFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRAL 61
Query: 99 GWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHD 156
GWP+L+I+GVEADDVIGTL+ +A K + VI+ST DKD+AQLVS+ + LIN N+ D
Sbjct: 62 GWPLLMIEGVEADDVIGTLSTEA-EKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLD 120
Query: 157 RTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
R ++++FGV PE+IVDY SLIGD DN+PGV+K GPKTA+K L QY SL+ I+ +A I
Sbjct: 121 RAGVLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTALKWLTQYESLDGIVAHAGEI 180
Query: 217 KGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
KG +G NLR AL++LP +K++T++ CDLT +I SI E+L +P+ + L +F ++
Sbjct: 181 KGAVGDNLRRALDFLPMARKLVTVERHCDLTDHIASIEENLQSRPESREELRDVFTRH 238
>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
Length = 940
Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats.
Identities = 127/259 (49%), Positives = 178/259 (68%), Gaps = 7/259 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACI 57
+ TLLLVDGSS +YRAF+A+PD+R + P GA+ G I M+ L + RA Y ACI
Sbjct: 4 KKTLLLVDGSSYLYRAFHAMPDLRAVPGDPKSPATGAIRGMINMMTALRREVRADYAACI 63
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDA GK FR+ LYP YKA R MP +L QI+ IH++VK +GWP+L + +EADDVIGTL
Sbjct: 64 FDAPGKTFRDDLYPEYKANRSPMPDDLRSQIDPIHEVVKLMGWPVLCVPDIEADDVIGTL 123
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
AK A + ++VI+S+ DKD++QLV I +I+ N K D + + FGV P ++DY
Sbjct: 124 AKTA-AQQGIEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPPTLMIDYQ 182
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L+GD DN+PGV+K+GPKTA K L +Y SL+ +I A +KG G+NLR AL+ LP +
Sbjct: 183 TLVGDAVDNVPGVEKVGPKTAAKWLLEYGSLDALIERAAEVKGQAGENLRKALDKLPLSR 242
Query: 236 KILTIKTDCDLTKNIVSIP 254
+++TI+TDC+L ++ +P
Sbjct: 243 QLVTIRTDCNLAAHVAGLP 261
>gi|442611897|ref|ZP_21026597.1| DNA polymerase I [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441746367|emb|CCQ12659.1| DNA polymerase I [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 915
Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats.
Identities = 131/279 (46%), Positives = 189/279 (67%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS ++RA++A P + N GA+YG + ML+ L K Y+ +++A IFDAK
Sbjct: 6 QNPLILVDGSSYLFRAYHAPPHLTNSKGEATGAIYGVVNMLKSLIKQYQPSHMAVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +YP YKA R MP +L QI +H ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYPEYKAHRPPMPEDLRSQIAPLHAIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V+IST DKDMAQLV+ + LIN + + D +I +FGV P+KI+DY +L+G
Sbjct: 126 -SEQQRHVLISTGDKDMAQLVNEHVTLINTMTDTVSDTDMVIEKFGVGPDKIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV GPKTAVK L QY SL+ +I++A+ IKG IG+ L+ A+ LP ++ T
Sbjct: 185 DKVDNIPGVDGCGPKTAVKWLQQYGSLQGVIDSAHEIKGKIGEKLQRAVPHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D D+ ++ E L LQ +D L++L+ + + +
Sbjct: 245 IKLDVDVESDL----EKLALQAQDNDALIELYGECEFKR 279
>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
Length = 926
Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats.
Identities = 130/274 (47%), Positives = 186/274 (67%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I M+R+L ++ + I +FDAKGK
Sbjct: 9 VVLVDGSSYLFRAYHALPPLMTSKNHPTGAIKGVIAMIRRLDLDFPGSKIVVVFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN LYP YKA R MP +L +QI IHQ+V+ +G P+LI+ GVEADDVIGTLA +A +K
Sbjct: 69 FRNDLYPDYKANRPPMPEDLAVQIEPIHQIVRHMGLPLLIVDGVEADDVIGTLAHEATSK 128
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKDMAQLVS + LIN N D + +FGV+P +I+DY +L+GD
Sbjct: 129 -GIDVVVSTGDKDMAQLVSAHVTLINTMTNTYMDNAGVEEKFGVTPAQIIDYLALVGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTAVK L +Y +++N++ NA++IKG +G+ LR A LP + + TIK
Sbjct: 188 DNIPGVNKCGPKTAVKWLQEYQNIDNLMANADDIKGKVGEYLRDARETLPLSRTLATIKL 247
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D +L + E L + ++ L++LF +Y+L
Sbjct: 248 DVELEFGL----EDLQEREQNNSALLELFREYEL 277
>gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby]
gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby]
Length = 896
Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats.
Identities = 136/272 (50%), Positives = 190/272 (69%), Gaps = 7/272 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ L+L+DGSS +RAF+ALP + N P GA+YG M++K+ K+Y+ IA +FDA
Sbjct: 1 MKPPLILIDGSSYFFRAFHALPPLTNSKGQPTGAIYGVANMVKKIIKDYQPEEIAVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ YP YKA R MP L Q + Q+++A+G P+LII GVEADDVIGTLAKQ
Sbjct: 61 KGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGTLAKQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ + V+IST DKDMAQLV+ ++LIN +N D + ++FGV+PE+I+DY +LI
Sbjct: 121 A-TEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK L +Y +L+N++ +AN I G IG+ LR ++ LP KK++
Sbjct: 180 GDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGKIGEYLRASIPHLPLSKKLV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQL 270
TIKTD +L N+ L+ +P D + L++L
Sbjct: 240 TIKTDLELPLNL----NQLMPKPADNEQLIKL 267
>gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris]
gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris]
Length = 896
Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats.
Identities = 136/272 (50%), Positives = 190/272 (69%), Gaps = 7/272 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ L+L+DGSS +RAF+ALP + N P GA+YG M++K+ K+Y+ IA +FDA
Sbjct: 1 MKPPLILIDGSSYFFRAFHALPPLTNSKGQPTGAIYGVANMVKKIIKDYQPEEIAVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ YP YKA R MP L Q + Q+++A+G P+LII GVEADDVIGTLAKQ
Sbjct: 61 KGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGTLAKQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ + V+IST DKDMAQLV+ ++LIN +N D + ++FGV+PE+I+DY +LI
Sbjct: 121 A-TEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK L +Y +L+N++ +AN I G IG+ LR ++ LP KK++
Sbjct: 180 GDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGKIGEYLRASIPHLPLSKKLV 239
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQL 270
TIKTD +L N+ L+ +P D + L++L
Sbjct: 240 TIKTDLELPLNL----NQLMPKPADNEQLIKL 267
>gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
Length = 936
Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats.
Identities = 129/284 (45%), Positives = 188/284 (66%), Gaps = 9/284 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIR----NIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRAF+ALPD+R + + GA+ G I ML+ L K A Y AC+FD
Sbjct: 6 TLVLVDGSSYLYRAFHALPDLRVVPGDARSAATGAIRGMINMLQALRKERPANYAACVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ +YP YKA R MP +L QI H++V+ +GWP+L I GVEADDVIGTLA
Sbjct: 66 ASGPTFRDSIYPEYKARRAPMPEDLRAQIAPTHEVVRLLGWPVLAIAGVEADDVIGTLAV 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + ++V++S+ DKD++QLV+ I +++ + K D + + FGV P+ +VDY +L
Sbjct: 126 TAAAQ-GMQVLVSSGDKDLSQLVNQHITIVDTMSGKKRDVAGVTAEFGVPPQLMVDYQTL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTA K L +Y SL+ ++ +A+ IKGV+G+NLR A+ WLP +++
Sbjct: 185 MGDAVDNVPGVPKVGPKTAAKWLQEYGSLDALLAHAHEIKGVVGENLRGAIGWLPTGRQL 244
Query: 238 LTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
+TI+TDCDL ++ +P ++L + L + KY L
Sbjct: 245 VTIRTDCDLAAHVPGLPALDALAMGAPQVPGLRAFYEKYGFKGL 288
>gi|387904750|ref|YP_006335088.1| DNA polymerase I [Burkholderia sp. KJ006]
gi|387579642|gb|AFJ88357.1| DNA polymerase I [Burkholderia sp. KJ006]
Length = 870
Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats.
Identities = 123/236 (52%), Positives = 171/236 (72%), Gaps = 3/236 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
MLR++ K A Y AC+FDAKGK FR+ LY YKA R MP +L LQ+ IH V+A+GW
Sbjct: 1 MLRRMRKEVSAEYSACVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGW 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRT 158
P+L+++GVEADDVIGTLA++A + + VI+ST DKD+AQLV+ ++ L+N N+ DR
Sbjct: 61 PLLMVEGVEADDVIGTLAREA-EQRGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRD 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
+I++FGV PE+I+DY +LIGD DN+PGV+K GPKTAVK L+QY+SL+ +I +A IKG
Sbjct: 120 GVIAKFGVPPERIIDYLALIGDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
V+G NLR AL++LP +K++T+ T CDL ++ SI SL + LL +F +Y
Sbjct: 180 VVGDNLRRALDFLPLGRKLVTVDTACDLAPHLESIEASLKTDGEARDLLRDIFARY 235
>gi|416964440|ref|ZP_11936580.1| DNA polymerase I, partial [Burkholderia sp. TJI49]
gi|325521684|gb|EGD00447.1| DNA polymerase I [Burkholderia sp. TJI49]
Length = 228
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 119/219 (54%), Positives = 165/219 (75%), Gaps = 3/219 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
MLR++ K A Y AC+FDAKGK FR+ LY YKA R MP +L LQ+ IH V+A+GW
Sbjct: 1 MLRRMRKEVSAEYSACVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGW 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRT 158
P+L+++GVEADDVIGTLA++A + + VI+ST DKD+AQLV++++ L+N N+ DR
Sbjct: 61 PLLMVEGVEADDVIGTLAREA-ERCGMNVIVSTGDKDLAQLVTDRVTLVNTMTNETLDRD 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
+I++FGV PE+I+DY +LIGD DN+PGV+K GPKTAVK L QY+SL+ +I +A IKG
Sbjct: 120 GVIAKFGVPPERIIDYLALIGDTVDNVPGVEKCGPKTAVKWLTQYDSLDGVIEHAAEIKG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESL 257
V+G NLR AL++LP +K++T++T CDL ++ SI SL
Sbjct: 180 VVGDNLRRALDFLPLGRKLVTVETACDLAPHLESIDVSL 218
>gi|344941875|ref|ZP_08781163.1| DNA polymerase I [Methylobacter tundripaludum SV96]
gi|344263067|gb|EGW23338.1| DNA polymerase I [Methylobacter tundripaludum SV96]
Length = 930
Score = 256 bits (654), Expect = 7e-66, Method: Composition-based stats.
Identities = 135/273 (49%), Positives = 182/273 (66%), Gaps = 7/273 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
++ L+LVDGSS ++RA++A+P + N + P A+YG MLRKL +Y + YI +FDA
Sbjct: 18 VRERLILVDGSSFLFRAYHAIPPLTNANGEPTNAIYGVSNMLRKLIADYHSDYITVVFDA 77
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GK FRN LY YKA R MP +L +QI +H +++A+G P++I GVEADDV+G LA+
Sbjct: 78 PGKTFRNELYDQYKAHRPPMPDDLRVQIAPLHNLIRAMGLPLIIESGVEADDVLGVLAQH 137
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + VIIST DKDMAQLV+ I L N +N D +I +FGV PE+I+DY +LI
Sbjct: 138 A-EQQGYDVIISTGDKDMAQLVTEHIILENTMSNTRMDIQGVIDKFGVRPEQIIDYLALI 196
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTA K L QY++LEN+I +A+ I G IG+NLR +L+ LP K++
Sbjct: 197 GDTVDNIPGVPKVGPKTAAKWLEQYSTLENLIAHADKITGKIGENLRASLDQLPLSKQLT 256
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
TIK D DL N+ E L QP D+ L L
Sbjct: 257 TIKCDLDLPYNM----EDLKQQPMDKAELRILL 285
>gi|398808927|ref|ZP_10567783.1| DNA polymerase I [Variovorax sp. CF313]
gi|398086508|gb|EJL77122.1| DNA polymerase I [Variovorax sp. CF313]
Length = 938
Score = 256 bits (654), Expect = 7e-66, Method: Composition-based stats.
Identities = 127/259 (49%), Positives = 178/259 (68%), Gaps = 7/259 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNI----DNFPVGALYGTIKMLRKLYKNYRATYIACI 57
+ TLLLVDGSS +YRAF+A+PD+R + + GA+ G I M+ L + RA Y ACI
Sbjct: 4 KKTLLLVDGSSYLYRAFHAMPDLRAVPGDSKSPATGAIRGMINMMTALRREVRADYAACI 63
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDA GK FR+ YP YKA R MP +L QI+ IH++VK +GWP+L + VEADDVIGTL
Sbjct: 64 FDAPGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVKLLGWPVLSVPDVEADDVIGTL 123
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
AK A + ++VI+S+ DKD++QLV I +I+ N K D + + FGV P ++DY
Sbjct: 124 AKIAAAQ-GVEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPPNLMIDYQ 182
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L+GD DN+PGV+K+GPKTA K L +Y SL+ +I + +KG G+NLR AL+ LP +
Sbjct: 183 TLVGDSVDNVPGVEKVGPKTAAKWLLEYGSLDALIERSTEVKGAAGENLRKALDKLPLSR 242
Query: 236 KILTIKTDCDLTKNIVSIP 254
+++TI+TDCDL ++V +P
Sbjct: 243 RLVTIRTDCDLDGHVVGLP 261
>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
Length = 926
Score = 256 bits (654), Expect = 7e-66, Method: Composition-based stats.
Identities = 132/286 (46%), Positives = 187/286 (65%), Gaps = 9/286 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNID----NFPVGALYGTIKMLRKLYKNYRATYIACI 57
+ TLLLVDGSS +YRAF+A+PD+R + + GA+ G I M++ L K A Y AC+
Sbjct: 4 KKTLLLVDGSSYLYRAFHAMPDLRAVPGDRASAATGAIRGMINMMQALRKEVHADYAACV 63
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDAKG FR+ +YP+YK R MP +L QI IH++V+ +GW +L + GVEADDVIGTL
Sbjct: 64 FDAKGPTFRDTIYPAYKQQRSPMPDDLRTQIAPIHEVVRLLGWKVLDVPGVEADDVIGTL 123
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
A A + + VI+S+ DKD+AQLV +I +I+ N K D + + FGV ++DY
Sbjct: 124 AVVA-ARQGIDVIVSSGDKDLAQLVDERITIIDTMNGKRRDLAGVEAEFGVPARLMLDYQ 182
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L+GD DN+PGV+K+GPKTA K L +Y SL+ ++ +A+ IKGV G+NLR AL+WLP +
Sbjct: 183 TLVGDQVDNVPGVEKVGPKTAAKWLLEYGSLDALVQSADKIKGVAGENLRKALDWLPTGR 242
Query: 236 KILTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
++LTIKTDC+L + +P +L L D + L + Y L
Sbjct: 243 QLLTIKTDCELDSWVDGLPALHALALGTPDGERLRAFYELYGFKGL 288
>gi|399114740|emb|CCG17535.1| DNA polymerase I [Taylorella equigenitalis 14/56]
Length = 908
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 122/275 (44%), Positives = 194/275 (70%), Gaps = 3/275 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRA +A+P++R+ D P GA++G I M+++ + YIAC+FDA
Sbjct: 1 MKKTLLLVDGSSFLYRAHFAMPNLRSPDGEPSGAIFGLINMMKRTQIVSKPDYIACVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
G+ FR+ LY YK+ R MP ++ QI IHQ ++A+GW I++ GVEADD+I T+A
Sbjct: 61 PGRTFRHELYTEYKSHRPPMPDDMRTQIEPIHQAIEALGWTIIMQSGVEADDIIATIADF 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINN-NKIHDRTTIISRFGVSPEKIVDYFSLIG 179
A+ + N+K +I+T+DKD+AQLV + I++I +I D ++ ++GV P++I+DY L+G
Sbjct: 121 AINQ-NIKCVIATSDKDIAQLVDDNISIITGKEEILDSNGVLEKYGVRPDQIIDYLMLMG 179
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D SDN+PGV K+GPKTA K LN++ SLEN++ NA ++KG + +NL A + +K++T
Sbjct: 180 DTSDNIPGVDKVGPKTATKWLNEFGSLENLLKNAGSLKGKVAQNLIEAQSQFDLTRKLVT 239
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
IK DCD++K + SI + L+ + K+ +L +++ ++
Sbjct: 240 IKKDCDISKWVKSI-DDLLPKEKNFDVLKEIYTRF 273
>gi|12043539|emb|CAC19788.1| DNA polymerase 1 [Burkholderia cepacia]
Length = 224
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 120/218 (55%), Positives = 159/218 (72%), Gaps = 3/218 (1%)
Query: 17 AFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKAT 76
A +A+PD+R + P GALYG + MLR++ K A Y AC+FDAKGK FR+ Y YKA
Sbjct: 5 ALHAMPDLRGPEGGPTGALYGIVNMLRRMRKEITAEYSACVFDAKGKTFRDDWYADYKAN 64
Query: 77 RKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDK 136
R MP +L QI IH V+A+GWP+L+I+GVEADDVIGTL+ A K + VI+ST DK
Sbjct: 65 RASMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLS-TAAEKRGMNVIVSTGDK 123
Query: 137 DMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPK 194
D+AQLVS+ + LIN N+ DR +I++FGV PE+I+DY SLIGD DN+PGV+K GPK
Sbjct: 124 DLAQLVSDHVTLINTMTNETLDRAGVIAKFGVPPERIIDYLSLIGDTVDNVPGVEKCGPK 183
Query: 195 TAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLP 232
TA+K L Q++SL+ I+ +A+ IKG +G NLR AL++LP
Sbjct: 184 TALKWLTQFDSLDGIVAHADEIKGAVGDNLRRALDFLP 221
>gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9]
gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9]
Length = 908
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 122/275 (44%), Positives = 194/275 (70%), Gaps = 3/275 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRA +A+P++R+ D P GA++G I M+++ + YIAC+FDA
Sbjct: 1 MKKTLLLVDGSSFLYRAHFAMPNLRSPDGEPSGAIFGLINMMKRTQIVSKPDYIACVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
G+ FR+ LY YK+ R MP ++ QI IHQ ++A+GW I++ GVEADD+I T+A
Sbjct: 61 PGRTFRHELYTEYKSHRPPMPDDMRTQIEPIHQAIEALGWTIIMQSGVEADDIIATIADF 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINN-NKIHDRTTIISRFGVSPEKIVDYFSLIG 179
A+ + N+K +I+T+DKD+AQLV + I++I +I D ++ ++GV P++I+DY L+G
Sbjct: 121 AINQ-NIKCVIATSDKDIAQLVDDNISIITGKEEILDSNGVLEKYGVRPDQIIDYLMLMG 179
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D SDN+PGV K+GPKTA K LN++ SLEN++ NA ++KG + +NL A + +K++T
Sbjct: 180 DTSDNIPGVDKVGPKTATKWLNEFGSLENLLKNAGSLKGKVAQNLIEAQSQFDLTRKLVT 239
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
IK DCD++K + SI + L+ + K+ +L +++ ++
Sbjct: 240 IKKDCDISKWVKSI-DDLLPKEKNFDVLKEIYTRF 273
>gi|397662061|ref|YP_006502761.1| DNA polymerase I [Taylorella equigenitalis ATCC 35865]
gi|394350240|gb|AFN36154.1| DNA polymerase I [Taylorella equigenitalis ATCC 35865]
Length = 908
Score = 256 bits (653), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 122/275 (44%), Positives = 194/275 (70%), Gaps = 3/275 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRA +A+P++R+ D P GA++G I M+++ + YIAC+FDA
Sbjct: 1 MKKTLLLVDGSSFLYRAHFAMPNLRSPDGEPSGAIFGLINMMKRTQIVSKPDYIACVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
G+ FR+ LY YK+ R MP ++ QI IHQ ++A+GW I++ GVEADD+I T+A
Sbjct: 61 PGRTFRHELYTEYKSHRPPMPDDMRTQIEPIHQAIEALGWTIIMQSGVEADDIIATIADF 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINN-NKIHDRTTIISRFGVSPEKIVDYFSLIG 179
A+ + N+K +I+T+DKD+AQLV + I++I +I D ++ ++GV P++I+DY L+G
Sbjct: 121 AINQ-NIKCVIATSDKDIAQLVDDNISIITGKEEILDSNGVLEKYGVRPDQIIDYLMLMG 179
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D SDN+PGV K+GPKTA K LN++ SLEN++ NA ++KG + +NL A + +K++T
Sbjct: 180 DTSDNIPGVDKVGPKTATKWLNEFGSLENLLKNAGSLKGKVAQNLIEAQSQFDLTRKLVT 239
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
IK DCD++K + SI + L+ + K+ +L +++ ++
Sbjct: 240 IKKDCDISKWVKSI-DDLLPKEKNFDVLKEIYTRF 273
>gi|381402205|ref|ZP_09927081.1| DNA polymerase I [Kingella kingae PYKK081]
gi|380832813|gb|EIC12705.1| DNA polymerase I [Kingella kingae PYKK081]
Length = 925
Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats.
Identities = 130/251 (51%), Positives = 173/251 (68%), Gaps = 3/251 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRAFYA+ + D P A+YG + ML++L A Y A +FDAK
Sbjct: 3 QKTLLLVDGSSYLYRAFYAMTHLSAPDGTPTNAVYGVLNMLKRLRAEQSADYCAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GKNFR+ LY YKATR MP L LQ +++ +V +GW +L I GVEADDVIGTLA A
Sbjct: 63 GKNFRHALYEDYKATRPPMPDELRLQADMLPDLVDLMGWKVLKISGVEADDVIGTLAIAA 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ VIIST DKDMAQLVS +I L+N N++ D ++++FGV PE+I D+ +L+G
Sbjct: 123 AAQ-DMNVIISTGDKDMAQLVSPRITLVNTMKNEMLDHDGVVAKFGVKPEQIRDFLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+K G KTA K L +Y SL+ I+ A+ KG IG+NLR AL LP +++T
Sbjct: 182 DKVDNVPGVEKCGEKTAAKWLAEYGSLDEIMRRADEFKGKIGENLRAALVQLPLSYELVT 241
Query: 240 IKTDCDLTKNI 250
IKTD DL+ ++
Sbjct: 242 IKTDVDLSTDL 252
>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
Length = 901
Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats.
Identities = 128/271 (47%), Positives = 183/271 (67%), Gaps = 7/271 (2%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
+ L+L+DGSS ++RAF+ALP + P GA+YG I MLRKL ++ Y+A IFDAKG
Sbjct: 5 SVLILIDGSSYLFRAFHALPPLTTSKGQPTGAVYGVINMLRKLLDEHQPHYVAVIFDAKG 64
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YKA R MP L QI +H +++A+G P+L ++GVEADDVIGTLA+QA
Sbjct: 65 KTFRDELFEQYKAHRPPMPEELACQIPPLHDLIRALGLPLLCVEGVEADDVIGTLAQQAS 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+ +IS+ DKD+AQLV++ ++L+N N D + ++F VSPE+IVDY +L+GD
Sbjct: 125 GQH-LETLISSGDKDLAQLVNHHVSLVNSTNQSKLDPAGVKAKFNVSPEQIVDYLALVGD 183
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PG+ IGPKTA KLL+QY+ L+ I+ +A IKG +G+NLR L LP +++ T+
Sbjct: 184 PIDNIPGIPGIGPKTAAKLLDQYHDLDQIMAHAQEIKGKVGENLRLHLAQLPLARQLATV 243
Query: 241 KTDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
+ D L P+ L QP D L +L+
Sbjct: 244 RRDLPLELG----PKDLQCQPPDIPTLRELY 270
>gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
Length = 911
Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats.
Identities = 134/276 (48%), Positives = 183/276 (66%), Gaps = 9/276 (3%)
Query: 5 LLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
++LVDGSS ++RA++ L ++RN P GA+ G I MLRKL K+Y + + +FDAKG
Sbjct: 10 VVLVDGSSYLFRAYHVPNLKELRNSKGQPTGAIRGVISMLRKLQKDYPESQVVAVFDAKG 69
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ +Y YKA R MP +L QI ++ +V+A+G P+LII+GVEADDVIGTLA +A
Sbjct: 70 KNFRHEMYSDYKANRPPMPEDLACQIEPLYDIVRAMGLPLLIIEGVEADDVIGTLAHEAT 129
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
TK L +IST DKDMAQLVS + L+N + DR ++ +FGV PE IVDY +LIGD
Sbjct: 130 TK-GLDAVISTGDKDMAQLVSPHVTLVNTMTDTTMDREGVVEKFGVPPELIVDYLALIGD 188
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV K GPKTAVK L ++ SL +I A+ +KG IG+NLR +L LP K++ TI
Sbjct: 189 TVDNIPGVNKCGPKTAVKWLGEFGSLAQVIAQADEVKGKIGENLRSSLEQLPLSKELATI 248
Query: 241 KTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
KTD +L + E + P D + L + F + +
Sbjct: 249 KTDVELPFTL----EEVHPNPVDTEALHKWFTELEF 280
>gi|388567029|ref|ZP_10153468.1| DNA polymerase I [Hydrogenophaga sp. PBC]
gi|388265734|gb|EIK91285.1| DNA polymerase I [Hydrogenophaga sp. PBC]
Length = 929
Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats.
Identities = 128/284 (45%), Positives = 187/284 (65%), Gaps = 9/284 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACIFD 59
TLLL+DGSS +YRA++A+PD+R + P GA+ G I M++ L K A + ACIFD
Sbjct: 8 TLLLIDGSSYLYRAYHAMPDLRAVPGDPNSPATGAIRGMINMMQSLRKEVPAVFAACIFD 67
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ LY YKA R MP +L QI IH++V+ +G+P++ + GVEADDVIGTLA+
Sbjct: 68 ASGPTFRDALYTEYKANRSPMPDDLRAQIPPIHEVVRLLGFPVIDVPGVEADDVIGTLAR 127
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + VI+S+ DKD+AQLV+ +IA+I+ + K D + + FGV ++DY +L
Sbjct: 128 -AAAEQGFDVIVSSGDKDLAQLVNERIAIIDTMSGKRRDMAGVQAEFGVPANLMIDYQTL 186
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K+GPKTA K L +Y SL+ ++ A +KGV G+NLR AL+WLP +++
Sbjct: 187 VGDTVDNVPGVDKVGPKTAAKWLLEYGSLDALVARAGEVKGVAGENLRKALDWLPTGRQL 246
Query: 238 LTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
+TIKTDCDL + +P +++ ++ D + L + KY L
Sbjct: 247 VTIKTDCDLNGFVPGLPALDAVRMKEPDNEALQGFYEKYGFKTL 290
>gi|334144667|ref|YP_004537823.1| DNA polymerase I [Thioalkalimicrobium cyclicum ALM1]
gi|333965578|gb|AEG32344.1| DNA polymerase I [Thioalkalimicrobium cyclicum ALM1]
Length = 935
Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats.
Identities = 132/274 (48%), Positives = 185/274 (67%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RAF+A+P + N + P GA+YG M+ KL + Y+ IA +FDAKGK
Sbjct: 9 IILVDGSSYLFRAFHAMPPLTNREGHPTGAIYGVTNMIGKLLETYQPEQIAVVFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN LY YKA R MP L +QI IH++VKA+G P+L+I+GVEADDVIGTLA QA T+
Sbjct: 69 FRNDLYADYKAHRPPMPDELRVQIAPIHEIVKALGLPLLVIEGVEADDVIGTLAVQA-TQ 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+IST DKDMAQLV+ I LIN + + ++ +FG+ P++I+DY +L+GD S
Sbjct: 128 AKKDALISTGDKDMAQLVNEHITLINTMTDTLMTPDKVVEKFGIRPDQIIDYLALMGDTS 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K GPKTAVK L Y++++N+I +AN IKG IG LR + L +++ TI+T
Sbjct: 188 DNIPGIPKCGPKTAVKWLTAYDTMDNLIAHANEIKGKIGDTLREHIPHLALSRQLTTIRT 247
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
DCDL +++P+ L Q D L L +Y+
Sbjct: 248 DCDLP---INLPD-LTRQAPDIDALKTLLAEYEF 277
>gi|399543583|ref|YP_006556891.1| DNA polymerase I [Marinobacter sp. BSs20148]
gi|399158915|gb|AFP29478.1| DNA polymerase I [Marinobacter sp. BSs20148]
Length = 936
Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats.
Identities = 128/274 (46%), Positives = 185/274 (67%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I M+R++ ++ + I +FDAKGK
Sbjct: 9 VVLVDGSSYLFRAYHALPPLMTSKNHPTGAIKGVIAMIRRIDLDFPGSKIVVVFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN LY YKA R MP +L LQI IHQ+V+ +G P+LI+ GVEADDVIGTLA +A +K
Sbjct: 69 FRNDLYADYKANRPPMPEDLALQIEPIHQIVRHMGLPLLIVDGVEADDVIGTLAHEATSK 128
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKDMAQLVS + LIN N D + +FGV+P +I+DY +L+GD
Sbjct: 129 -GIDVVVSTGDKDMAQLVSPHVTLINTMTNTHMDAAGVEEKFGVTPAQIIDYLALVGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTAVK L +Y+ ++N++ NA+ +KG +G+ LR A LP + + TIK
Sbjct: 188 DNIPGVNKCGPKTAVKWLQEYHDIDNLMANADKVKGKVGEYLRDARETLPLSRTLATIKL 247
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D +L + E L + ++ L++LF++Y+L
Sbjct: 248 DVELAFGL----EDLQEREQNNSALLELFHEYEL 277
>gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
Length = 930
Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats.
Identities = 130/245 (53%), Positives = 171/245 (69%), Gaps = 3/245 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAFYA+ + D P A+YG + MLR+L Y AC+FDAKGK
Sbjct: 10 TLLLVDGSSYLYRAFYAMTHLSAPDGTPTNAVYGVLNMLRRLRAETPHDYCACVFDAKGK 69
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ L+P YKATR MP +L Q +++ +V+ +GW +L I VEADDVIGTLAKQA +
Sbjct: 70 NFRHALFPDYKATRPPMPDDLRPQADMLPDLVELMGWKVLKISDVEADDVIGTLAKQAES 129
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
++ VIIST DKDMAQLVS +I L+N N+ D + ++FGV P +I D+ +L+GD
Sbjct: 130 A-DMNVIISTGDKDMAQLVSERITLVNTMKNETLDEAGVFNKFGVHPNQIRDFLALMGDK 188
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K G KTA K L ++ SL+NI+N A+ KG IG+NLR AL LP +++TIK
Sbjct: 189 VDNVPGVEKCGEKTAAKWLAEFGSLQNIMNKADEFKGKIGENLRAALPQLPLSYELVTIK 248
Query: 242 TDCDL 246
TD DL
Sbjct: 249 TDVDL 253
>gi|416165079|ref|ZP_11607332.1| DNA polymerase I [Neisseria meningitidis N1568]
gi|433474305|ref|ZP_20431659.1| DNA polymerase I family protein [Neisseria meningitidis 97021]
gi|433482735|ref|ZP_20439987.1| DNA polymerase I family protein [Neisseria meningitidis 2006087]
gi|433484739|ref|ZP_20441956.1| DNA polymerase I family protein [Neisseria meningitidis 2002038]
gi|433486980|ref|ZP_20444169.1| DNA polymerase I family protein [Neisseria meningitidis 97014]
gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568]
gi|432207623|gb|ELK63612.1| DNA polymerase I family protein [Neisseria meningitidis 97021]
gi|432214206|gb|ELK70111.1| DNA polymerase I family protein [Neisseria meningitidis 2006087]
gi|432219545|gb|ELK75386.1| DNA polymerase I family protein [Neisseria meningitidis 2002038]
gi|432220579|gb|ELK76399.1| DNA polymerase I family protein [Neisseria meningitidis 97014]
Length = 937
Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats.
Identities = 129/256 (50%), Positives = 174/256 (67%), Gaps = 3/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GA+YG + MLR+L +Y Y A +FDAKGK
Sbjct: 6 TLLLVDGSSYLYRAYHAMAQLTAPDGAPTGAMYGVLNMLRRLRADYVHDYCAVVFDAKGK 65
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 NFRHEMFSDYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG-A 124
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 EHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGDK 184
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y SL+ +I +A IKG +G+NL+ AL LP ++TIK
Sbjct: 185 VDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHAAEIKGKVGENLQAALPQLPLSYDLVTIK 244
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + ESL
Sbjct: 245 TDVDLHAELSDGIESL 260
>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
Length = 927
Score = 253 bits (645), Expect = 8e-65, Method: Composition-based stats.
Identities = 128/283 (45%), Positives = 186/283 (65%), Gaps = 9/283 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNI----DNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
L+LVDGSS +YRA++A+PD+R + + P GA+ G I ML+ L K Y ++A +FDA
Sbjct: 16 LVLVDGSSYLYRAYHAMPDLRAVPSDPQSAPTGAIRGMINMLQALLKEYPTEHMAVVFDA 75
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
G FR LYP YKA R MP +L +QI I ++++ +G P+L + VEADDVIGTLAK
Sbjct: 76 AGATFREALYPQYKAHRAPMPDDLRVQIEPIDEVIRLLGLPVLRVPDVEADDVIGTLAKT 135
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + +V+IS+ DKD++QLV +I +I+ + K+ D + + FGV P +VDY +L+
Sbjct: 136 AAAQ-GWRVVISSGDKDLSQLVDERITIIDTMSGKVRDIAGVQAEFGVPPALMVDYQTLV 194
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K+GPKTA K L Y SL+ I+ +A+ IKGV G+NLR AL+WLP +++L
Sbjct: 195 GDAVDNVPGVDKVGPKTAAKWLQAYGSLQAIVEHAHEIKGVAGENLRRALDWLPLARQLL 254
Query: 239 TIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
TI+TDCDL ++ +P ++L + D L + +Y L
Sbjct: 255 TIRTDCDLDGHVPGLPALDALRRRAPDVPALRDFYQRYGFRGL 297
>gi|430762992|ref|YP_007218849.1| DNA polymerase I [Thioalkalivibrio nitratireducens DSM 14787]
gi|430012616|gb|AGA35368.1| DNA polymerase I [Thioalkalivibrio nitratireducens DSM 14787]
Length = 902
Score = 253 bits (645), Expect = 8e-65, Method: Composition-based stats.
Identities = 130/276 (47%), Positives = 180/276 (65%), Gaps = 7/276 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRAF+ALP + P GALYG + MLRKL +Y +A +FDA GK
Sbjct: 7 LVLVDGSSYLYRAFHALPPLTAPGGEPSGALYGVLGMLRKLRADYGPQRMAVVFDAPGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L +QI +H++V+A+G P+L I GVEADDVI TLA QA +
Sbjct: 67 FRDDLYAEYKANRPSMPEELAVQIEPLHELVRAMGLPLLCIPGVEADDVIATLAAQAQAR 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
V+IST DKD+AQLVS+++ L+N N + D + +FGV PE+IVD +L+GD
Sbjct: 127 GE-PVVISTGDKDLAQLVSDRVTLVNTMNGTVLDPPRVREKFGVDPERIVDLLTLVGDTV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTA K L +Y SL+ +I NA+ IKG +G+NLR AL LP ++++T++
Sbjct: 186 DNVPGVDKVGPKTAAKWLAEYGSLDAVIENADRIKGKVGENLRAALERLPLSRELVTVRR 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
D DL + L L D L +++ ++ +
Sbjct: 246 DVDLGID----EHELALGKPDTTRLREMYGRFGFRR 277
>gi|340363286|ref|ZP_08685627.1| DNA-directed DNA polymerase I [Neisseria macacae ATCC 33926]
gi|339886227|gb|EGQ75895.1| DNA-directed DNA polymerase I [Neisseria macacae ATCC 33926]
Length = 668
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/256 (49%), Positives = 172/256 (67%), Gaps = 3/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GALYG + MLR+L +Y Y A +FDAKGK
Sbjct: 28 TLLLVDGSSYLYRAYHAMAQLSAPDGAPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGK 87
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLA A
Sbjct: 88 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMA-G 146
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V++ST DKDMAQLV+ ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 147 EAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGDK 206
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y SL ++ +A IKG +G+NL+ AL LP ++TIK
Sbjct: 207 VDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKGKVGENLQAALPQLPLSYDLVTIK 266
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + ESL
Sbjct: 267 TDVDLHTELSDGLESL 282
>gi|333376435|ref|ZP_08468214.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330]
gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330]
Length = 925
Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats.
Identities = 129/251 (51%), Positives = 172/251 (68%), Gaps = 3/251 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q TLLLVDGSS +YRAFYA+ + D P A+YG + ML++L A Y A +FDAK
Sbjct: 3 QKTLLLVDGSSYLYRAFYAMTHLSAPDGTPTNAVYGVLNMLKRLRAEQSADYCAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GKNFR+ LY YKATR MP L Q +++ +V +GW +L I GVEADDVIGTLA A
Sbjct: 63 GKNFRHALYEDYKATRPPMPDELRPQADMLPDLVDLMGWKVLKISGVEADDVIGTLAIAA 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ VIIST DKDMAQLVS +I L+N N++ D ++++FGV PE+I D+ +L+G
Sbjct: 123 AAQ-DMNVIISTGDKDMAQLVSPRITLVNTMKNEMLDHDGVVAKFGVKPEQIRDFLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+K G KTA K L +Y SL+ I+ A+ KG IG+NLR AL LP +++T
Sbjct: 182 DKVDNVPGVEKCGEKTAAKWLAEYGSLDEIMRRADEFKGKIGENLRAALVQLPLSYELVT 241
Query: 240 IKTDCDLTKNI 250
IKTD DL+ ++
Sbjct: 242 IKTDVDLSTDL 252
>gi|416214808|ref|ZP_11623102.1| DNA polymerase I [Neisseria meningitidis M01-240013]
gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013]
Length = 983
Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats.
Identities = 131/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 51 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 110
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 111 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 169
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 170 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 229
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NLR AL LP ++TI
Sbjct: 230 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLRAALPRLPLSYDLVTI 289
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 290 KTDVDLHAELSDGIESL 306
>gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14]
gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14]
Length = 937
Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats.
Identities = 131/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NLR AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLRAALPRLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|433522672|ref|ZP_20479354.1| DNA polymerase I family protein [Neisseria meningitidis 61103]
gi|432257636|gb|ELL12933.1| DNA polymerase I family protein [Neisseria meningitidis 61103]
Length = 931
Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats.
Identities = 131/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NLR AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLRAALPRLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGLESL 261
>gi|421551497|ref|ZP_15997487.1| DNA polymerase I [Neisseria meningitidis 69166]
gi|433472228|ref|ZP_20429606.1| DNA polymerase I family protein [Neisseria meningitidis 68094]
gi|433478535|ref|ZP_20435842.1| DNA polymerase I family protein [Neisseria meningitidis 70012]
gi|433526980|ref|ZP_20483600.1| DNA polymerase I family protein [Neisseria meningitidis 69096]
gi|433539743|ref|ZP_20496208.1| DNA polymerase I family protein [Neisseria meningitidis 70030]
gi|402327161|gb|EJU62553.1| DNA polymerase I [Neisseria meningitidis 69166]
gi|432206854|gb|ELK62855.1| DNA polymerase I family protein [Neisseria meningitidis 68094]
gi|432213061|gb|ELK68989.1| DNA polymerase I family protein [Neisseria meningitidis 70012]
gi|432258403|gb|ELL13688.1| DNA polymerase I family protein [Neisseria meningitidis 69096]
gi|432271076|gb|ELL26205.1| DNA polymerase I family protein [Neisseria meningitidis 70030]
Length = 931
Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats.
Identities = 131/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NLR AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLRAALPRLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGLESL 261
>gi|386816130|ref|ZP_10103348.1| DNA polymerase I [Thiothrix nivea DSM 5205]
gi|386420706|gb|EIJ34541.1| DNA polymerase I [Thiothrix nivea DSM 5205]
Length = 927
Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats.
Identities = 134/274 (48%), Positives = 181/274 (66%), Gaps = 10/274 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS ++RAF+ALP + N P GA++G + ML KL K+Y ++A IFDA GK
Sbjct: 9 LVLVDGSSYLFRAFHALPPLTNSHGEPTGAMHGVLNMLDKLRKDYDPEHMAVIFDAPGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +YP YKA R MP +L QI + +++A G+P+LII VEADDVIGTLA+
Sbjct: 69 FRDDMYPEYKANRPPMPDDLRCQIEPLLDIIRAQGYPLLIIPDVEADDVIGTLAQ----A 124
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++ KVIIST DKDMAQLV ++ LIN + D ++ +FGV+PE+I DY +LIGD
Sbjct: 125 YDGKVIISTGDKDMAQLVDERVHLINTMSGLYSDPAGVVEKFGVAPERIRDYLALIGDTV 184
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTAVK L +Y SLENI+ +A+ KG IG+ LR AL LP ++TIK
Sbjct: 185 DNVPGVNKVGPKTAVKWLQEYGSLENIMAHASEFKGKIGEYLREALAHLPLSYDLVTIKC 244
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D +L PE+L D L +L+ +Y+
Sbjct: 245 DVELDLQ----PETLAFALPDADKLRELYERYEF 274
>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
Length = 901
Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats.
Identities = 129/269 (47%), Positives = 180/269 (66%), Gaps = 7/269 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS ++RAF+ALP + P GA+YG I MLRKL Y+ YIA +FDAKGK
Sbjct: 7 LILIDGSSYLFRAFHALPSLTTSKGQPTGAIYGVINMLRKLLDEYQPQYIAVVFDAKGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L+ YKA R MP L QI +H +++A+G P+L +KGVEADDVIGTLA+QA T
Sbjct: 67 FRHELFEQYKAHRPPMPEELACQIQPLHDLIRALGLPLLCMKGVEADDVIGTLARQA-TA 125
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINNNKIH--DRTTIISRFGVSPEKIVDYFSLIGDMS 182
L+ +IS+ DKD+AQLV+ + L+N + D + ++F VSPE+IVDY +L+GD
Sbjct: 126 QRLETLISSGDKDLAQLVNPHVNLVNTMNLSKLDPAGVKAKFNVSPEQIVDYLALVGDTV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ +GPKTA KLL QY+SL+ I+ A++IKG +G+NLR L LP K++ TI+
Sbjct: 186 DNIPGIPGVGPKTAAKLLCQYHSLDQIMAYASDIKGKMGENLRSHLPQLPLAKQLATIRQ 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLF 271
D L + P+ L P + L +L+
Sbjct: 246 DVSLDWS----PKELQRAPPNISALRELY 270
>gi|349610431|ref|ZP_08889780.1| hypothetical protein HMPREF1028_01755, partial [Neisseria sp.
GT4A_CT1]
gi|348609981|gb|EGY59691.1| hypothetical protein HMPREF1028_01755 [Neisseria sp. GT4A_CT1]
Length = 849
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 126/256 (49%), Positives = 171/256 (66%), Gaps = 3/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GALYG + MLR+L +Y Y A +FDAKGK
Sbjct: 5 TLLLVDGSSYLYRAYHAMAQLSAPDGAPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGK 64
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLA A
Sbjct: 65 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMA-G 123
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 124 EAGWNVVVSTGDKDMAQLVNERVTLVNTMSGEKLDIEGVKEKFGVRPDQIRDYLALMGDK 183
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y SL ++ +A IKG +G+NL+ AL LP ++TIK
Sbjct: 184 VDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKGKVGENLQAALPQLPLSYDLVTIK 243
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + ESL
Sbjct: 244 TDVDLHSELSDGLESL 259
>gi|418289130|ref|ZP_12901513.1| DNA polymerase I [Neisseria meningitidis NM233]
gi|372200282|gb|EHP14384.1| DNA polymerase I [Neisseria meningitidis NM233]
Length = 938
Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 178/257 (69%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GA+YG + MLR+L +Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGAMYGVLNMLRRLRADYVHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491]
gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491]
Length = 938
Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 176/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|421538952|ref|ZP_15985124.1| DNA-directed DNA polymerase I [Neisseria meningitidis 93003]
gi|402315659|gb|EJU51222.1| DNA-directed DNA polymerase I [Neisseria meningitidis 93003]
Length = 930
Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 176/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|418291386|ref|ZP_12903402.1| DNA polymerase I [Neisseria meningitidis NM220]
gi|372199938|gb|EHP14093.1| DNA polymerase I [Neisseria meningitidis NM220]
Length = 938
Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 176/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
Length = 975
Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 176/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 51 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 110
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 111 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 169
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 170 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 229
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 230 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 289
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 290 KTDVDLHAELSDGIESL 306
>gi|421543233|ref|ZP_15989330.1| DNA polymerase I [Neisseria meningitidis NM255]
gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275]
gi|402315439|gb|EJU51003.1| DNA polymerase I [Neisseria meningitidis NM255]
Length = 931
Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 176/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|421562011|ref|ZP_16007848.1| DNA polymerase I family protein [Neisseria meningitidis NM2657]
gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153]
gi|402336396|gb|EJU71657.1| DNA polymerase I family protein [Neisseria meningitidis NM2657]
Length = 930
Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ ++ +A+ IKG +G+NLR AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKGKVGENLRAALPRLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHTELSDGIESL 261
>gi|399116301|emb|CCG19106.1| DNA polymerase I [Taylorella asinigenitalis 14/45]
Length = 908
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 123/275 (44%), Positives = 190/275 (69%), Gaps = 3/275 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRA +A+P++R+ D P GA++G I M+++ + +IAC+FDA
Sbjct: 1 MKKTLLLVDGSSFLYRAHFAMPNLRSPDGEPSGAIFGLINMMKRTQIITKPDFIACVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GK FR+ LY YKA R MP L QI +HQ + A+G I++ GVEADD+I TLA
Sbjct: 61 PGKTFRHDLYKEYKAHRPAMPDELRDQIESVHQAIDALGCNIIMQSGVEADDIIATLADY 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINN-NKIHDRTTIISRFGVSPEKIVDYFSLIG 179
A TK+ +K +I+T DKD+AQLV++ + +I +I DR ++ ++GV PE+I+DY L+G
Sbjct: 121 A-TKNQIKTVIATGDKDIAQLVNSNVEIITGKEEILDRNGVLEKYGVYPEQIIDYLMLMG 179
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D SDN+PGV K+GPKTA K L +Y +LEN++ N +++KG + +NL+ A +K++T
Sbjct: 180 DSSDNIPGVDKVGPKTASKWLQEYGTLENLLQNIDSLKGKVAQNLKEASPQFVLTRKLVT 239
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
IK DCD+++ + S+ + L+ + KD +L +++ +Y
Sbjct: 240 IKNDCDISQWVSSM-DDLLPKDKDYAVLKEIYTRY 273
>gi|433495466|ref|ZP_20452526.1| DNA polymerase I family protein [Neisseria meningitidis NM762]
gi|432227846|gb|ELK83551.1| DNA polymerase I family protein [Neisseria meningitidis NM762]
Length = 930
Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ ++ +A+ IKG +G+NLR AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKGKVGENLRAALPRLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|416179949|ref|ZP_11611251.1| DNA polymerase I [Neisseria meningitidis M6190]
gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190]
Length = 975
Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 51 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 110
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 111 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 169
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 170 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 229
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ ++ +A+ IKG +G+NLR AL LP ++TI
Sbjct: 230 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKGKVGENLRAALPRLPLSYDLVTI 289
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 290 KTDVDLHAELSDGIESL 306
>gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18]
gi|416193506|ref|ZP_11617172.1| DNA polymerase I [Neisseria meningitidis ES14902]
gi|433493413|ref|ZP_20450496.1| DNA polymerase I family protein [Neisseria meningitidis NM586]
gi|433497536|ref|ZP_20454563.1| DNA polymerase I family protein [Neisseria meningitidis M7089]
gi|433499582|ref|ZP_20456586.1| DNA polymerase I family protein [Neisseria meningitidis M7124]
gi|433501648|ref|ZP_20458628.1| DNA polymerase I family protein [Neisseria meningitidis NM174]
gi|433503773|ref|ZP_20460727.1| DNA polymerase I family protein [Neisseria meningitidis NM126]
gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18]
gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902]
gi|432225958|gb|ELK81693.1| DNA polymerase I family protein [Neisseria meningitidis NM586]
gi|432232141|gb|ELK87795.1| DNA polymerase I family protein [Neisseria meningitidis M7089]
gi|432232652|gb|ELK88289.1| DNA polymerase I family protein [Neisseria meningitidis M7124]
gi|432233147|gb|ELK88780.1| DNA polymerase I family protein [Neisseria meningitidis NM174]
gi|432238400|gb|ELK93967.1| DNA polymerase I family protein [Neisseria meningitidis NM126]
Length = 930
Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ ++ +A+ IKG +G+NLR AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKGKVGENLRAALPRLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|421863590|ref|ZP_16295285.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 939
Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 131/258 (50%), Positives = 175/258 (67%), Gaps = 5/258 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL--PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAK
Sbjct: 6 TLLLVDGSSYLYRAYHAMLRQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GKNFR+ ++ YKATR MP +L Q + ++V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 GKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLTGWPVLVIGQVEADDVIGTLAKQG 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V H L+VI+ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L G
Sbjct: 126 V-GHGLQVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALTG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+K GPKTAVK L Y SL+ ++ +A+ IKG +G+NLR AL LP ++T
Sbjct: 185 DKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKGKVGENLRAALPRLPLSYDLVT 244
Query: 240 IKTDCDLTKNIVSIPESL 257
IKTD DL + ESL
Sbjct: 245 IKTDVDLHAELSDGLESL 262
>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
Length = 894
Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 129/244 (52%), Positives = 171/244 (70%), Gaps = 3/244 (1%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +RAF+ALP + N P GA+YG + M+++L K+Y+ +A +FDAKGK
Sbjct: 6 LILVDGSSYFFRAFHALPPLTNSKGQPTGAIYGVVNMIKRLIKDYQPEELAVVFDAKGKT 65
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ YP YKA R MP L Q + ++++A+G PILII+GVEADDVIGTLA QA T+
Sbjct: 66 FRDEWYPEYKAHRPPMPQELSSQFTPLIELLEAMGIPILIIEGVEADDVIGTLATQA-TE 124
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V+IST DKDMAQLV+ I+LIN NN D + +FG+ P +++DY +LIGD
Sbjct: 125 QGVSVVISTGDKDMAQLVNEHISLINTMNNSAMDIEGVKEKFGIMPSQVIDYLTLIGDSV 184
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTA+K L +Y SL+N+I NAN I G IG LR ++ LP KK++TIKT
Sbjct: 185 DNVPGVTKCGPKTAIKWLTEYQSLDNLIRNANQIGGKIGDYLRESIPQLPLSKKLVTIKT 244
Query: 243 DCDL 246
D L
Sbjct: 245 DVSL 248
>gi|433537080|ref|ZP_20493582.1| DNA polymerase I family protein [Neisseria meningitidis 77221]
gi|432272841|gb|ELL27946.1| DNA polymerase I family protein [Neisseria meningitidis 77221]
Length = 930
Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|421557556|ref|ZP_16003459.1| DNA-directed DNA polymerase I [Neisseria meningitidis 80179]
gi|402334637|gb|EJU69920.1| DNA-directed DNA polymerase I [Neisseria meningitidis 80179]
Length = 930
Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|421559939|ref|ZP_16005805.1| DNA-directed DNA polymerase I [Neisseria meningitidis 92045]
gi|402334262|gb|EJU69553.1| DNA-directed DNA polymerase I [Neisseria meningitidis 92045]
Length = 931
Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|421555236|ref|ZP_16001171.1| DNA polymerase I [Neisseria meningitidis 98008]
gi|402331018|gb|EJU66360.1| DNA polymerase I [Neisseria meningitidis 98008]
Length = 931
Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|421564076|ref|ZP_16009887.1| DNA polymerase I [Neisseria meningitidis NM2795]
gi|421907922|ref|ZP_16337785.1| DNA polymerase I [Neisseria meningitidis alpha704]
gi|393290951|emb|CCI73796.1| DNA polymerase I [Neisseria meningitidis alpha704]
gi|402339295|gb|EJU74512.1| DNA polymerase I [Neisseria meningitidis NM2795]
Length = 931
Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|385337292|ref|YP_005891165.1| DNA polymerase I [Neisseria meningitidis WUE 2594]
gi|433476409|ref|ZP_20433741.1| DNA polymerase I family protein [Neisseria meningitidis 88050]
gi|433480620|ref|ZP_20437901.1| DNA polymerase I family protein [Neisseria meningitidis 63041]
gi|433514299|ref|ZP_20471082.1| DNA polymerase I family protein [Neisseria meningitidis 63049]
gi|433516455|ref|ZP_20473216.1| DNA polymerase I family protein [Neisseria meningitidis 2004090]
gi|433518498|ref|ZP_20475236.1| DNA polymerase I family protein [Neisseria meningitidis 96023]
gi|433520665|ref|ZP_20477375.1| DNA polymerase I family protein [Neisseria meningitidis 65014]
gi|433523925|ref|ZP_20480590.1| DNA polymerase I family protein [Neisseria meningitidis 97020]
gi|433529082|ref|ZP_20485688.1| DNA polymerase I family protein [Neisseria meningitidis NM3652]
gi|433531256|ref|ZP_20487834.1| DNA polymerase I family protein [Neisseria meningitidis NM3642]
gi|433533329|ref|ZP_20489886.1| DNA polymerase I family protein [Neisseria meningitidis 2007056]
gi|433535405|ref|ZP_20491932.1| DNA polymerase I family protein [Neisseria meningitidis 2001212]
gi|433541852|ref|ZP_20498292.1| DNA polymerase I family protein [Neisseria meningitidis 63006]
gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594]
gi|432207854|gb|ELK63841.1| DNA polymerase I family protein [Neisseria meningitidis 88050]
gi|432213897|gb|ELK69807.1| DNA polymerase I family protein [Neisseria meningitidis 63041]
gi|432245787|gb|ELL01252.1| DNA polymerase I family protein [Neisseria meningitidis 63049]
gi|432251011|gb|ELL06384.1| DNA polymerase I family protein [Neisseria meningitidis 2004090]
gi|432251505|gb|ELL06871.1| DNA polymerase I family protein [Neisseria meningitidis 96023]
gi|432251856|gb|ELL07218.1| DNA polymerase I family protein [Neisseria meningitidis 65014]
gi|432260824|gb|ELL16082.1| DNA polymerase I family protein [Neisseria meningitidis 97020]
gi|432263706|gb|ELL18919.1| DNA polymerase I family protein [Neisseria meningitidis NM3652]
gi|432264133|gb|ELL19341.1| DNA polymerase I family protein [Neisseria meningitidis NM3642]
gi|432264774|gb|ELL19972.1| DNA polymerase I family protein [Neisseria meningitidis 2007056]
gi|432269406|gb|ELL24565.1| DNA polymerase I family protein [Neisseria meningitidis 2001212]
gi|432275406|gb|ELL30479.1| DNA polymerase I family protein [Neisseria meningitidis 63006]
Length = 938
Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442]
gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442]
Length = 930
Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|385324925|ref|YP_005879364.1| DNA polymerase I [Neisseria meningitidis 8013]
gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013]
Length = 930
Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ +I +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|350546099|ref|ZP_08915523.1| DNA polymerase I [Candidatus Burkholderia kirkii UZHbot1]
gi|350526125|emb|CCD41287.1| DNA polymerase I [Candidatus Burkholderia kirkii UZHbot1]
Length = 868
Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 170/238 (71%), Gaps = 3/238 (1%)
Query: 39 IKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAI 98
+ MLR+L + A Y AC+FDAKGK FR+ Y YKA R+ MP +L QI IH V+A+
Sbjct: 2 VNMLRRLRREINAEYSACVFDAKGKTFRDDWYAEYKANRRSMPDDLSRQIEPIHVAVRAL 61
Query: 99 GWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHD 156
GWP+++I+ VEADDVIGTLA +A K +KVI+ST DKD+AQLV++ + LIN N+ D
Sbjct: 62 GWPLVMIERVEADDVIGTLAVEA-EKCGIKVIVSTGDKDLAQLVTDHVTLINAMTNETLD 120
Query: 157 RTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
R + ++FGV PE+IVDY SLIGD DN+PGV+K GPKTA+K L+QY++L+ I+ +A+ I
Sbjct: 121 RAGVQTKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTALKWLSQYDTLDGIVEHADEI 180
Query: 217 KGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
KG +G LR AL +LP KK++T+ T+CDLT I SI ++L +P+ L +F ++
Sbjct: 181 KGAVGDKLRKALEFLPMAKKLVTVHTECDLTSQIESIEDTLASRPESRDELRDVFMRH 238
>gi|421541233|ref|ZP_15987362.1| DNA polymerase I [Neisseria meningitidis 93004]
gi|402315776|gb|EJU51333.1| DNA polymerase I [Neisseria meningitidis 93004]
Length = 938
Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NLR AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLRAALPRLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|389606716|emb|CCA45628.1| DNA polymerase I [Neisseria meningitidis alpha522]
Length = 931
Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NLR AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLRAALPRLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|451812259|ref|YP_007448713.1| DNA polymerase I [Candidatus Kinetoplastibacterium galatii TCC219]
gi|451778161|gb|AGF49109.1| DNA polymerase I [Candidatus Kinetoplastibacterium galatii TCC219]
Length = 902
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 127/279 (45%), Positives = 192/279 (68%), Gaps = 3/279 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M LLL+DGSS +YRAFYA+PD+RN P GA+YG M+RKL +++ YIAC+FD+
Sbjct: 1 MSEKLLLLDGSSYLYRAFYAMPDLRNSMGEPTGAIYGVTNMVRKLISDHKTNYIACVFDS 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
+ FR ++PSYKA R MP +L+ Q I+++++A+G PI EADD+IG++A +
Sbjct: 61 SEQTFRKDIFPSYKANRVSMPEDLVRQTKHIYKIIEALGLPIYYSNKFEADDIIGSIATK 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
+ N ++IS+ DKD++QLV+N+++++N NN+I D +I +FGV P IVDY LI
Sbjct: 121 VLKISNFDIMISSGDKDLSQLVNNRVSIVNTMNNEILDENGVIRKFGVPPHLIVDYLMLI 180
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGVK IGPKTAVKLLN+Y SL NII N N I G++G NLR +++ +K+L
Sbjct: 181 GDSVDNVPGVKNIGPKTAVKLLNKYGSLNNIILNINEIHGLVGYNLRNSIDKFEITRKLL 240
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLN 277
T+K DC+L ++ S E +++ + +L+ L+ +++ +
Sbjct: 241 TVKCDCNLAPDVNS-EEDFLIKSVNNNILIDLYARFEFS 278
>gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090]
gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090]
gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
Length = 930
Score = 249 bits (637), Expect = 8e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 174/257 (67%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +LIGD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALIGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ ++ +A IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHAPEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHTELSDGIESL 261
>gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62]
gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62]
Length = 930
Score = 249 bits (637), Expect = 8e-64, Method: Composition-based stats.
Identities = 130/257 (50%), Positives = 174/257 (67%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N + + D + ++FGV P++I DY +LIGD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALIGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ ++ +A IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHAPEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHTELSDGIESL 261
>gi|350560184|ref|ZP_08929024.1| DNA polymerase I [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349782452|gb|EGZ36735.1| DNA polymerase I [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 902
Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats.
Identities = 128/276 (46%), Positives = 178/276 (64%), Gaps = 7/276 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRAF+ALP + P GALYG + MLRKL +Y +A +FDA GK
Sbjct: 7 LVLVDGSSYLYRAFHALPPLTAPGGEPTGALYGVVGMLRKLRADYGPQRMAVVFDAPGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q +H++V+A+G P+L I GVEADDVI TLA QA +
Sbjct: 67 FRDDLYAEYKANRPPMPEELAAQTEPLHELVRALGLPLLCIPGVEADDVIATLAAQAEAR 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
V+IST DKD+AQLV +++ L+N N + DR + +FGV PE+IVD +L+GD
Sbjct: 127 GE-PVVISTGDKDLAQLVGDRVTLVNTMNGTVLDRAGVREKFGVDPERIVDLLTLVGDSV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTA K L +Y SL+ +I NA+ IKG +G+NLR AL L ++++T++
Sbjct: 186 DNVPGVDKVGPKTAAKWLAEYGSLDAVIENADRIKGKVGENLRAALERLALSRELVTVRR 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
D DL + L L+ D L +++ ++ +
Sbjct: 246 DVDLGID----EHELTLREPDTTRLREMYARFGFRR 277
>gi|357403761|ref|YP_004915685.1| DNA polymerase I [Methylomicrobium alcaliphilum 20Z]
gi|351716426|emb|CCE22086.1| DNA polymerase I (POL I) [Methylomicrobium alcaliphilum 20Z]
Length = 907
Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats.
Identities = 130/275 (47%), Positives = 181/275 (65%), Gaps = 13/275 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+L+DGSS ++RA++A+P + + D P A+YG MLRKL ++ YI IFDA
Sbjct: 6 QKYLVLIDGSSFLFRAYHAVPPLTSPDGSPTNAIYGVANMLRKLMADHPTDYIGVIFDAP 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LY YKA R MP +L +QI +H++++A+G P+++ VEADDVIG AKQA
Sbjct: 66 GKTFRHDLYDQYKAHRPPMPDDLRVQIEPLHRLIRAMGLPLIMQPDVEADDVIGAFAKQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ +V+IST DKDMAQLV+ I L N + DR +I +FGV+PE+I+DY +L+G
Sbjct: 126 -ERDGFQVVISTGDKDMAQLVTEHITLENTMSGSRTDRQGVIEKFGVTPEQIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTA K LN+Y +LE +I A+ IKG +G+NLR AL+ LP K++ T
Sbjct: 185 DTVDNIPGVPKVGPKTAAKWLNEYQTLERLIECADQIKGKVGENLRNALDQLPLSKQLTT 244
Query: 240 IKTDCDLTKNIVSIP---ESLILQPKDEKLLMQLF 271
I DCD V +P E L + P D+ L +
Sbjct: 245 I--DCD-----VPLPCSAEELKMNPVDQSELKSML 272
>gi|333981901|ref|YP_004511111.1| DNA polymerase I [Methylomonas methanica MC09]
gi|333805942|gb|AEF98611.1| DNA polymerase I [Methylomonas methanica MC09]
Length = 918
Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats.
Identities = 122/246 (49%), Positives = 170/246 (69%), Gaps = 3/246 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
NTL+LVDGSS ++RAF+A+P + N P A+YG MLRKL +Y Y+ +FDA G
Sbjct: 7 NTLILVDGSSFLFRAFHAVPPLSNAQGLPTNAVYGVSNMLRKLINDYDTPYVTVVFDAPG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ LY YKA R MP +L +QI +H++++A+G P++I GVEADDV+G+LA+ A
Sbjct: 67 KTFRHDLYDQYKAHRPPMPDDLRVQIEPLHELIRALGLPLIIEHGVEADDVLGSLAQNA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V+IS+ DKDMAQLV+++I L N+ N D + +FGV PE+I+DY +L+GD
Sbjct: 126 ARQGFHVVISSGDKDMAQLVTDRITLENSMTNTRMDIAGVEEKFGVKPEQIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV K+GPKTA K L QY +L+N++ +A+ IKG IG NLR AL LP +++ TI
Sbjct: 186 AVDNIPGVPKVGPKTAAKWLQQYGTLDNLVAHADEIKGKIGDNLREALPQLPLSQELTTI 245
Query: 241 KTDCDL 246
K D L
Sbjct: 246 KCDVAL 251
>gi|404379564|ref|ZP_10984620.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
gi|404294620|gb|EFG30551.2| DNA polymerase I [Simonsiella muelleri ATCC 29453]
Length = 916
Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats.
Identities = 132/256 (51%), Positives = 174/256 (67%), Gaps = 6/256 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAFYAL + D P A+YG +KML+ L A Y A +FDAKGK
Sbjct: 3 TLLLVDGSSYLYRAFYALTHLSAPDGTPTNAVYGVLKMLKSLRAEQPADYCAVVFDAKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ L+P YKATR MP +L Q ++ ++V+ +GW +L I VEADDVIGTLA QA
Sbjct: 63 NFRHALFPDYKATRPPMPDDLRPQAEMLPELVELMGWKVLKINDVEADDVIGTLAVQAAA 122
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ N+ VIIST DKDMAQLV+ +I L+N N+ D ++ +FGV PE+I D+ +L+GD
Sbjct: 123 Q-NMNVIISTGDKDMAQLVNTQITLVNTMKNETLDSAGVMQKFGVKPEQIRDFLALMGDK 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K G KTA K L ++ SL+ I+ A+ KG IG+NLR AL LP +++TIK
Sbjct: 182 VDNVPGVEKCGEKTAAKWLAEFGSLDEIMRRADEFKGKIGENLRAALPQLPLSYELVTIK 241
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + S+P L
Sbjct: 242 TDVDLHE---SLPNGL 254
>gi|433470123|ref|ZP_20427529.1| DNA polymerase I family protein [Neisseria meningitidis 98080]
gi|432201090|gb|ELK57176.1| DNA polymerase I family protein [Neisseria meningitidis 98080]
Length = 930
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|433465957|ref|ZP_20423427.1| DNA polymerase I family protein [Neisseria meningitidis NM422]
gi|433489153|ref|ZP_20446301.1| DNA polymerase I family protein [Neisseria meningitidis M13255]
gi|433491331|ref|ZP_20448443.1| DNA polymerase I family protein [Neisseria meningitidis NM418]
gi|433505806|ref|ZP_20462736.1| DNA polymerase I family protein [Neisseria meningitidis 9506]
gi|433507967|ref|ZP_20464863.1| DNA polymerase I family protein [Neisseria meningitidis 9757]
gi|433510154|ref|ZP_20467009.1| DNA polymerase I family protein [Neisseria meningitidis 12888]
gi|433512352|ref|ZP_20469160.1| DNA polymerase I family protein [Neisseria meningitidis 4119]
gi|432200654|gb|ELK56744.1| DNA polymerase I family protein [Neisseria meningitidis NM422]
gi|432220612|gb|ELK76431.1| DNA polymerase I family protein [Neisseria meningitidis M13255]
gi|432225465|gb|ELK81208.1| DNA polymerase I family protein [Neisseria meningitidis NM418]
gi|432238941|gb|ELK94502.1| DNA polymerase I family protein [Neisseria meningitidis 9506]
gi|432239177|gb|ELK94736.1| DNA polymerase I family protein [Neisseria meningitidis 9757]
gi|432244612|gb|ELL00098.1| DNA polymerase I family protein [Neisseria meningitidis 12888]
gi|432244713|gb|ELL00198.1| DNA polymerase I family protein [Neisseria meningitidis 4119]
Length = 938
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58]
gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58]
Length = 938
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|421567131|ref|ZP_16012867.1| DNA-directed DNA polymerase I [Neisseria meningitidis NM3001]
gi|402344142|gb|EJU79283.1| DNA-directed DNA polymerase I [Neisseria meningitidis NM3001]
Length = 930
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|421566312|ref|ZP_16012064.1| DNA polymerase I [Neisseria meningitidis NM3081]
gi|402340664|gb|EJU75862.1| DNA polymerase I [Neisseria meningitidis NM3081]
Length = 931
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|421545300|ref|ZP_15991364.1| DNA-directed DNA polymerase I [Neisseria meningitidis NM140]
gi|421547348|ref|ZP_15993386.1| DNA-directed DNA polymerase I [Neisseria meningitidis NM183]
gi|421549385|ref|ZP_15995399.1| DNA-directed DNA polymerase I [Neisseria meningitidis NM2781]
gi|421553556|ref|ZP_15999516.1| DNA-directed DNA polymerase I [Neisseria meningitidis NM576]
gi|402321377|gb|EJU56852.1| DNA-directed DNA polymerase I [Neisseria meningitidis NM140]
gi|402321711|gb|EJU57184.1| DNA-directed DNA polymerase I [Neisseria meningitidis NM183]
gi|402323375|gb|EJU58819.1| DNA-directed DNA polymerase I [Neisseria meningitidis NM2781]
gi|402327868|gb|EJU63253.1| DNA-directed DNA polymerase I [Neisseria meningitidis NM576]
Length = 930
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|385852064|ref|YP_005898579.1| DNA polymerase I [Neisseria meningitidis M04-240196]
gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196]
Length = 938
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|385340828|ref|YP_005894700.1| DNA polymerase I [Neisseria meningitidis G2136]
gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136]
Length = 930
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|416208578|ref|ZP_11621126.1| DNA polymerase I [Neisseria meningitidis 961-5945]
gi|433467978|ref|ZP_20425426.1| DNA polymerase I family protein [Neisseria meningitidis 87255]
gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945]
gi|432201173|gb|ELK57257.1| DNA polymerase I family protein [Neisseria meningitidis 87255]
Length = 930
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|416184988|ref|ZP_11613240.1| DNA polymerase I [Neisseria meningitidis M13399]
gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399]
Length = 931
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 125 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHAELSDGIESL 261
>gi|416198970|ref|ZP_11619280.1| DNA polymerase I [Neisseria meningitidis CU385]
gi|427826643|ref|ZP_18993693.1| DNA polymerase I [Neisseria meningitidis H44/76]
gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76]
gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385]
Length = 983
Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 129/257 (50%), Positives = 175/257 (68%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAKG
Sbjct: 51 TLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKG 110
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 111 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG- 169
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H L+VI+ST DKDMAQLV ++ L+N +++ D + ++FGV P++I DY +L+GD
Sbjct: 170 AEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGD 229
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A+ IKG +G+NL+ AL LP ++TI
Sbjct: 230 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTI 289
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 290 KTDVDLHAELSDGIESL 306
>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
Length = 939
Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats.
Identities = 128/274 (46%), Positives = 182/274 (66%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LVDGSS ++RAF+A+P + N GA++G I M+ KL + Y+ IA +FDAKGKN
Sbjct: 14 FILVDGSSYLFRAFHAMPPLTNTKGHATGAIFGVINMIGKLLEQYQPERIAVVFDAKGKN 73
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L +QI IH+++KA+G P+L+I GVEADDV+GTLA QA T+
Sbjct: 74 FRHELYEDYKAHRPPMPDELRIQIEPIHEIIKALGIPLLVIDGVEADDVMGTLAHQA-TQ 132
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ ++ST DKDMAQLV+ I L+N N+ + ++ +F V PE+I+DY +L+GD S
Sbjct: 133 AKMDALLSTGDKDMAQLVNEHITLVNTMNDTLMTPDSVFEKFHVKPEQIIDYLALMGDSS 192
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K GPKTA K +++Y S++N+I +A IKG IG+NLR L L +++ TI+
Sbjct: 193 DNIPGIPKCGPKTAAKWISEYGSIDNLIEHAEEIKGKIGENLRANLEQLKLSQQLTTIRL 252
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
DCDL + I D + L LF++Y L
Sbjct: 253 DCDLPIALNDIKR----HEADMEALEALFSEYDL 282
>gi|387825251|ref|YP_005824722.1| DNA polymerase I [Francisella cf. novicida 3523]
gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
Length = 897
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/277 (45%), Positives = 184/277 (66%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I ML+KL Y Y+A +FDAKGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPTMYDTEYVAVVFDAKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA RK M L +QI +HQ++K +G+P++I GVEADDVIGTLA Q + K
Sbjct: 64 FRHQLYPEYKAHRKDMDDELRVQIEPLHQIIKKMGFPVIIEDGVEADDVIGTLA-QNLQK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++IIST DKDMAQLV++ I L ++ N D ++ ++ +SP++I+DY +L+GD S
Sbjct: 123 QGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLKKYQISPQQIIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTAVK L Y +++ II N IKG +G+NLR ++ L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + E L + D+ L++ + +Y+ L
Sbjct: 243 DLELDLTV----EDLKCRAADKAYLIEAYTRYEFKSL 275
>gi|416174680|ref|ZP_11609272.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
Length = 937
Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats.
Identities = 127/256 (49%), Positives = 172/256 (67%), Gaps = 3/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GA+YG + MLR+L +Y Y A +FDAKGK
Sbjct: 6 TLLLVDGSSYLYRAYHAMAQLTAPDGAPTGAMYGVLNMLRRLRADYVHDYCAVVFDAKGK 65
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++P YKATR MP +L Q + +V+ IGWP+L+I VEADDVIGTLA A
Sbjct: 66 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLIGWPVLVIPQVEADDVIGTLAAMA-G 124
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V++ST DKDMAQLV+ ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 EAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGDK 184
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y SL ++ +A IKG +G+NLR AL LP ++TIK
Sbjct: 185 VDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKGKVGENLRAALQRLPLSYDLVTIK 244
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + ESL
Sbjct: 245 TDVDLHTELSDGIESL 260
>gi|385329229|ref|YP_005883532.1| DNA polymerase I [Neisseria meningitidis alpha710]
gi|385341173|ref|YP_005895044.1| DNA polymerase I [Neisseria meningitidis M01-240149]
gi|385856471|ref|YP_005902983.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
gi|416189242|ref|ZP_11615204.1| DNA polymerase I [Neisseria meningitidis M0579]
gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710]
gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579]
gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149]
gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
Length = 929
Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats.
Identities = 127/256 (49%), Positives = 172/256 (67%), Gaps = 3/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GA+YG + MLR+L +Y Y A +FDAKGK
Sbjct: 6 TLLLVDGSSYLYRAYHAMAQLTAPDGAPTGAMYGVLNMLRRLRADYVHDYCAVVFDAKGK 65
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++P YKATR MP +L Q + +V+ IGWP+L+I VEADDVIGTLA A
Sbjct: 66 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLIGWPVLVIPQVEADDVIGTLAAMA-G 124
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V++ST DKDMAQLV+ ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 125 EAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGDK 184
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y SL ++ +A IKG +G+NLR AL LP ++TIK
Sbjct: 185 VDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKGKVGENLRAALQRLPLSYDLVTIK 244
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + ESL
Sbjct: 245 TDVDLHTELSDGIESL 260
>gi|333912942|ref|YP_004486674.1| DNA polymerase I [Delftia sp. Cs1-4]
gi|333743142|gb|AEF88319.1| DNA polymerase I [Delftia sp. Cs1-4]
Length = 947
Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats.
Identities = 128/286 (44%), Positives = 187/286 (65%), Gaps = 11/286 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIR----NIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+L+DGSS +YRA++A+PD+R N ++ GA+ G I ML+ + K A Y C+FD
Sbjct: 6 TLVLIDGSSYLYRAYHAMPDLRAEPGNPESPATGAIRGMINMLQAIRKEVAADYAVCVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
G FR+ LYP YKA R MP +L QI IH++V+ +GWP+L I+GVEADDVIGTLAK
Sbjct: 66 TSGPTFRDTLYPEYKAHRSPMPDDLRSQIEPIHEVVRLLGWPVLAIQGVEADDVIGTLAK 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + + V+IS+ DKD++QLV + I +++ + K D + + FGV P +++DY +L
Sbjct: 126 TAAAQ-GVNVVISSGDKDLSQLVDSHIMVMDTMSGKRRDVAGVTAEFGVPPTQMIDYQAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL--NWLPKLK 235
+GD DN+PGV K+GPKTAVK L ++ SL+ +I A+ IKGV G+NLR A+ L +
Sbjct: 185 VGDAVDNVPGVSKVGPKTAVKWLAEHGSLDGLIAAADGIKGVAGQNLRDAIASGQLALSR 244
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPK--DEKLLMQLFNKYKLNKL 279
+++T+KTDCDLT + ++P L P+ D L + +Y L
Sbjct: 245 QLVTMKTDCDLTAEVPTLPVLDALAPREPDTAPLRDFYERYGFKGL 290
>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
Length = 912
Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats.
Identities = 126/277 (45%), Positives = 181/277 (65%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRAF+A+P + N D P GA+YG + M+RKL +YR IA +FDA G+
Sbjct: 8 LILVDGSSYLYRAFHAMPPLTNKDGEPTGAMYGVLNMVRKLLDDYRPERIAVVFDAPGRT 67
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L+ YKA R MP L QI + +++A+G P+L + GVEADDVIGTLA+QA +
Sbjct: 68 FRDELFDQYKAHRPPMPDELRAQIQPLKDIIRAMGLPLLEVPGVEADDVIGTLARQA-AE 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
V+IST DKDMAQLV ++ L+N N+ D + +FGV PE+I+DY +L+GD S
Sbjct: 127 AGQPVVISTGDKDMAQLVDEQVTLLNTMNDTRLDEAGVKEKFGVPPERIIDYLALVGDSS 186
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV ++GPKTA K LNQ+ SL+ + A+ +KG +G++LR L+ L + + TI+
Sbjct: 187 DNIPGVPRVGPKTAAKWLNQFGSLDALKARADEVKGKVGESLRAHLDELALSEDLATIRC 246
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D DL + PE L D + L + + +Y+ +L
Sbjct: 247 DLDLDQR----PEDLKPGESDVERLREYYQRYEFRRL 279
>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
Length = 903
Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats.
Identities = 127/269 (47%), Positives = 178/269 (66%), Gaps = 7/269 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS ++RAF+ALP + P GA+YG I MLRKL Y+ YIA +FDAKGK
Sbjct: 9 LILIDGSSYLFRAFHALPSLTTSKGQPTGAIYGVINMLRKLLDEYQPQYIAVVFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L+ YK R MP L QI +H +++A+G P+L +KGVEADDVIGTLA+QA T
Sbjct: 69 FRHELFEQYKDHRPPMPEELACQIQPLHDLIRALGLPLLCVKGVEADDVIGTLARQA-TA 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINNNKIH--DRTTIISRFGVSPEKIVDYFSLIGDMS 182
L+ +IS+ DKD+AQLV+ ++L+N + D + ++F VSPE+IVDY +L+GD
Sbjct: 128 QRLETLISSGDKDLAQLVNPHVSLVNTMNLSKLDPAGVKAKFNVSPEQIVDYLALVGDTV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ IGPKTA KLL QY+SL+ I+ A+ IKG +G++LR L LP K++ T++
Sbjct: 188 DNIPGIPGIGPKTAAKLLCQYHSLDQIMAYASEIKGKMGESLRSHLTQLPLAKELATVRQ 247
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLF 271
D L P+ L P + L +L+
Sbjct: 248 DLLLDLG----PKDLRCAPPNIPALRELY 272
>gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
Length = 930
Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats.
Identities = 126/257 (49%), Positives = 173/257 (67%), Gaps = 3/257 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
+TLLLVDGSS +YRA++A+ + D P GA+YG + MLR+L +Y Y A +FDAKG
Sbjct: 5 HTLLLVDGSSYLYRAYHAMAQLTAPDGAPTGAMYGVLNMLRRLRADYVHDYCAVVFDAKG 64
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLAK A
Sbjct: 65 KNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAKMA- 123
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 124 GEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALMGD 183
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A IKG +G+NL+ AL LP ++TI
Sbjct: 184 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKGKVGENLQAALEQLPLSYNLVTI 243
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 244 KTDVDLHTELSDDLESL 260
>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
Length = 898
Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats.
Identities = 129/249 (51%), Positives = 171/249 (68%), Gaps = 3/249 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ +LVDG+S +YRAF+ALP + N P GA+YG I MLRKL K YI +FDA
Sbjct: 1 MKKPFILVDGTSYLYRAFHALPPLMNSKGEPTGAIYGVISMLRKLMKENDPEYIVVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR LY YKA R MP +L +QI ++ +++ +G P++I GVEADDVIGTLA +
Sbjct: 61 KGKTFREALYSEYKAHRPLMPDDLQVQIEPLYALIRGLGLPLVIHSGVEADDVIGTLATK 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A+ +H V+IST DKD AQLV +I L+N N DR +I +FGV+PE+I DY SLI
Sbjct: 121 AL-QHLRPVLISTGDKDFAQLVCEEITLVNTMTNTRLDRQGVIDKFGVAPEQITDYLSLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV +GPKTA K LN Y +LE++I NA+ IKG +G NLR + + L ++++
Sbjct: 180 GDPVDNVPGVPNVGPKTAAKWLNHYGNLESLIKNASAIKGKVGDNLRASRDKLLLSRQLV 239
Query: 239 TIKTDCDLT 247
TIKTD DL+
Sbjct: 240 TIKTDVDLS 248
>gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
23834]
gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
23834]
Length = 928
Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats.
Identities = 127/259 (49%), Positives = 173/259 (66%), Gaps = 3/259 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ TLLLVDGSS +YRA++A+ + D P GALYG + MLR+L +Y Y A +FDA
Sbjct: 1 MRKTLLLVDGSSYLYRAYHAMAQLTAPDGAPTGALYGVLNMLRRLRADYVHDYCAVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGKNFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLA
Sbjct: 61 KGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAM 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+
Sbjct: 121 A-GEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALM 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV+K GPKTAVK L Y SL ++ +A IKG +G+NL+ AL LP ++
Sbjct: 180 GDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKGKVGENLQAALPQLPLSYDLV 239
Query: 239 TIKTDCDLTKNIVSIPESL 257
TIKTD DL + ESL
Sbjct: 240 TIKTDVDLHSELSDGLESL 258
>gi|390948708|ref|YP_006412467.1| DNA polymerase I [Thiocystis violascens DSM 198]
gi|390425277|gb|AFL72342.1| DNA polymerase I [Thiocystis violascens DSM 198]
Length = 907
Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats.
Identities = 129/277 (46%), Positives = 177/277 (63%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVD S ++RA++ALP + N P GAL G + MLRKL + +R Y+ +FDA GK+
Sbjct: 7 LILVDASGYLFRAYHALPKLTNSRGEPTGALLGVLNMLRKLIEEHRPEYLGVVFDAAGKS 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN LYP+YKA R MP +L QI + ++++A+G P+L+I VEADDVIGTLA QA
Sbjct: 67 FRNDLYPAYKAHRPPMPEDLREQIQPLQEVIRAMGLPLLVIPEVEADDVIGTLATQAAAM 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ +IST DKDMAQLV + L+N + + D + +FGV PE+IVDY SL+GD +
Sbjct: 127 -GIPTLISTGDKDMAQLVDEHVTLVNTMTDTLLDPAGVREKFGVPPERIVDYLSLMGDSA 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K G KTAVK + +Y LE +I NA IKG IG+NLR AL+ LP +++ TIK
Sbjct: 186 DNVPGVPKCGEKTAVKWIAEYGGLEGVIANAGTIKGKIGENLRAALDQLPLSRQLTTIKR 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D L P L P D + L + +++ +L
Sbjct: 246 DVALEYG----PTDLRRTPPDVETLRGWYERFESRRL 278
>gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
Length = 930
Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats.
Identities = 126/257 (49%), Positives = 173/257 (67%), Gaps = 3/257 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
+TLLLVDGSS +YRA++A+ + D P GALYG + MLR+L +Y Y +FDAKG
Sbjct: 5 HTLLLVDGSSYLYRAYHAMAQLTAPDGAPTGALYGVLNMLRRLRSDYVHDYCVVVFDAKG 64
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLAK A
Sbjct: 65 KNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAKMA- 123
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 124 SEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALMGD 183
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A IKG +G+NL+ AL LP ++TI
Sbjct: 184 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKGKVGENLQAALPQLPLSYDLVTI 243
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 244 KTDVDLHTELSDGLESL 260
>gi|388457969|ref|ZP_10140264.1| DNA polymerase I [Fluoribacter dumoffii Tex-KL]
Length = 892
Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats.
Identities = 129/245 (52%), Positives = 172/245 (70%), Gaps = 3/245 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M + L+L+DGSS +RAF+ALP + N P GA+YG M++KL K+Y+ +A +FDA
Sbjct: 1 MTSPLILIDGSSYFFRAFHALPPLTNSKGQPTGAIYGVANMIKKLIKDYQPEELAVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ Y YKA R MP +L Q + Q+++A+G PILII+GVEADDVIGTLAKQ
Sbjct: 61 KGKTFRDDWYAEYKAHRPPMPDDLSSQFEPLIQLLQAMGLPILIIEGVEADDVIGTLAKQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ + V+IST DKDMAQLV+ I LIN +N + + +FGV PE+++DY +LI
Sbjct: 121 A-TEQGIPVVISTGDKDMAQLVNEHITLINTMSNTSLNVNGVQEKFGVKPEQVIDYLTLI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PGV K GPKTAVK L +Y +L+N+I NA I G IG+ LR ++ LP KK++
Sbjct: 180 GDSVDNIPGVTKCGPKTAVKWLVEYQTLDNLIQNAGKISGKIGEYLRTSIPQLPLSKKLV 239
Query: 239 TIKTD 243
TIKTD
Sbjct: 240 TIKTD 244
>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
Length = 947
Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 187/286 (65%), Gaps = 11/286 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIR----NIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+L+DGSS +YRA++A+PD+R N ++ GA+ G I ML+ + K A Y C+FD
Sbjct: 6 TLVLIDGSSYLYRAYHAMPDLRAEPGNPESPATGAIRGMINMLQAIRKEVAADYAVCVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
G FR+ LYP YKA R MP +L QI IH++V+ +GWP+L I+GVEADDVIGTLAK
Sbjct: 66 TSGPTFRDTLYPEYKAHRSPMPDDLRSQIEPIHEVVRLLGWPVLAIQGVEADDVIGTLAK 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A + + V+IS+ DKD++QLV + I +++ + K D + + FGV P +++DY +L
Sbjct: 126 TAAAQ-GVNVVISSGDKDLSQLVDSHIMVMDTMSGKRRDVAGVTAEFGVPPTQMIDYQAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL--NWLPKLK 235
+GD DN+PGV K+GPKTAVK L ++ SL+ +I A+ IKGV G+NLR A+ L +
Sbjct: 185 VGDAVDNVPGVSKVGPKTAVKWLAEHGSLDGLIAAADGIKGVAGQNLRDAIASGQLALSR 244
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPK--DEKLLMQLFNKYKLNKL 279
+++T+KTDCDL+ + ++P L P+ D L + +Y L
Sbjct: 245 QLVTMKTDCDLSAEVPTLPVLDALAPREPDTAPLRDFYERYGFKGL 290
>gi|260220820|emb|CBA28768.1| hypothetical protein Csp_A08790 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 430
Score = 246 bits (628), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 121/252 (48%), Positives = 167/252 (66%), Gaps = 5/252 (1%)
Query: 32 VGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLI 91
GA+ I M+ L K Y A Y+AC+FDAKG FR+ +YP YKA R MP +L QI I
Sbjct: 50 TGAVRIMINMMNSLRKEYPADYVACVFDAKGPTFRDEIYPEYKAHRDPMPDDLRSQIAPI 109
Query: 92 HQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN- 150
H++V+ +GW +L + GVEADDVIGTLA A ++ ++VI+S+ DKD+AQLV+ I +I+
Sbjct: 110 HEIVRLLGWKVLDVPGVEADDVIGTLAATAASQ-GIEVIVSSGDKDLAQLVNEHITIIDT 168
Query: 151 -NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENI 209
N K D + + FGV ++DY +L+GD DN+PGV K+GPKTAVK L QY SL+ +
Sbjct: 169 MNGKRRDLAGVEAEFGVPARLMLDYQTLVGDTVDNVPGVAKVGPKTAVKWLQQYGSLQGV 228
Query: 210 INNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIP--ESLILQPKDEKLL 267
++NA NI GV+G+NLR AL+WLP + +LTIKTDCDLT + +P +S+ +D L
Sbjct: 229 VDNAANIGGVVGENLRKALDWLPTGRTLLTIKTDCDLTGWVDGLPAMDSIAAGAQDTGAL 288
Query: 268 MQLFNKYKLNKL 279
+ KY L
Sbjct: 289 RAFYEKYGFKGL 300
>gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
Length = 939
Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats.
Identities = 130/258 (50%), Positives = 173/258 (67%), Gaps = 5/258 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL--PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L +Y Y A +FDAK
Sbjct: 6 TLLLVDGSSYLYRAYHAMLRQNLTAPDGAPTGALYGVLNMLRRLRADYPHDYCAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GKNFR+ ++ YKATR MP +L Q + ++V+ GWP+L+I VEADDVIGTLAKQ
Sbjct: 66 GKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLTGWPVLVIGQVEADDVIGTLAKQG 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V H L+VI+ST DKDMAQLV+ + L+N + + D + +FGV P++I DY +L G
Sbjct: 126 V-GHGLQVIVSTGDKDMAQLVNESVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALTG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+K GPKTA K L Y SL+ ++ +A IKG +G+NLR AL LP ++T
Sbjct: 185 DKVDNVPGVEKCGPKTAEKWLEAYGSLQGVMEHALEIKGKVGENLRAALPRLPLSYDLVT 244
Query: 240 IKTDCDLTKNIVSIPESL 257
IKTD DL + ESL
Sbjct: 245 IKTDVDLHAELSDGLESL 262
>gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica 020-06]
gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06]
Length = 932
Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats.
Identities = 129/258 (50%), Positives = 173/258 (67%), Gaps = 5/258 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL--PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
TLLLVDGSS +YRA++A+ ++ D P GALYG + MLR+L Y Y A +FDAK
Sbjct: 6 TLLLVDGSSYLYRAYHAMLRQNLTAPDGAPTGALYGVLNMLRRLRLEYPHDYCAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GKNFR+ ++ YKATR MP +L Q + ++V+ GWP+L++ VEADDVIGTLAKQ
Sbjct: 66 GKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLTGWPVLVVGQVEADDVIGTLAKQG 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V H L+VI+ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L G
Sbjct: 126 V-GHGLQVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALTG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+K GPKTA K L Y SL+ ++ +A IKG +G+NLR AL LP ++T
Sbjct: 185 DKVDNVPGVEKCGPKTAEKWLEAYGSLQGVMEHAAEIKGKVGENLRAALPRLPLSYDLVT 244
Query: 240 IKTDCDLTKNIVSIPESL 257
IKTD DL + ESL
Sbjct: 245 IKTDVDLHAELSDGLESL 262
>gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Pseudogulbenkiania ferrooxidans 2002]
gi|224604032|gb|EEG10206.1| DNA polymerase I [Pseudogulbenkiania ferrooxidans 2002]
Length = 887
Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats.
Identities = 122/238 (51%), Positives = 162/238 (68%), Gaps = 3/238 (1%)
Query: 39 IKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAI 98
+ MLR+L K R Y AC+FDAKGK FR+ LYP YKA R MP L QI +H +V+A
Sbjct: 2 VNMLRRLEKEVRFDYSACVFDAKGKTFRDELYPDYKANRPSMPEELASQITAVHDVVQAS 61
Query: 99 GWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHD 156
GWPIL++ GVEADDVIGTLA+QA ++VI+ST DKD+AQLVS + L+N N+ D
Sbjct: 62 GWPILVVDGVEADDVIGTLARQAEAA-GMQVIVSTGDKDIAQLVSPVVTLVNTMTNETLD 120
Query: 157 RTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
+ +FGV P I+DY +LIGD DN+PGV K GPKTAVK L QY SLE ++ NA I
Sbjct: 121 EGGVKEKFGVPPGLIIDYLTLIGDKVDNVPGVDKCGPKTAVKWLEQYGSLEAVMANAAAI 180
Query: 217 KGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
G +G NLR AL+WLPK ++++TIK D L + E+L+ + +D+ L++LF ++
Sbjct: 181 SGKVGDNLRAALDWLPKGRELITIKCDVPLDAELPQGMETLLHRERDKPKLIELFTRF 238
>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease/3'->5'
polymerase/3'->5' exonuclease [Pseudoalteromonas
haloplanktis TAC125]
gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Pseudoalteromonas haloplanktis TAC125]
Length = 911
Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats.
Identities = 124/279 (44%), Positives = 187/279 (67%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG I ML+ L + Y +++ IFDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLIRQYDPSHMVVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI IH+++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPIHRIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV PE I+DY +L+G
Sbjct: 126 -SEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ +++NA+ IKG IG+ L AL+ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDNASEIKGKIGEKLAAALDHLPLSYQLAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQEPNKDELIALYGECEFRR 279
>gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I, partial [Kingella denitrificans ATCC
33394]
gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
Length = 984
Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats.
Identities = 125/249 (50%), Positives = 169/249 (67%), Gaps = 3/249 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRAFYA+ + D P A+YG + MLR+L + AC+FDAKGK
Sbjct: 65 TLLLVDGSSYLYRAFYAMTHLTAPDGTPTNAVYGVLNMLRRLRAEQPHDFCACVFDAKGK 124
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ L+ YKATR MP +L Q +++ ++V+ +GW +L + VEADDVIGTLA QA
Sbjct: 125 NFRHELFEDYKATRPPMPDDLRPQADMLPELVELMGWKVLKVPQVEADDVIGTLAVQAAA 184
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ + V+IST DKDMAQLVS I L+N N+ D + +FGV P++I D+ +L+GD
Sbjct: 185 Q-KMNVVISTGDKDMAQLVSEHITLVNTMKNETLDSEGVYQKFGVRPDQIRDFLALMGDK 243
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K G KTA K L +Y SL+NI+ A+ KG IG+NLR AL LP +++TIK
Sbjct: 244 VDNVPGVEKCGEKTAAKWLAEYGSLDNIMRQADGFKGKIGENLRAALPQLPLSYELVTIK 303
Query: 242 TDCDLTKNI 250
TD DL+ +
Sbjct: 304 TDVDLSAEL 312
>gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
Length = 929
Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats.
Identities = 126/256 (49%), Positives = 171/256 (66%), Gaps = 3/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GALYG + MLR+L +Y Y A +FDAKGK
Sbjct: 5 TLLLVDGSSYLYRAYHAMAQLSAPDGAPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGK 64
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLA A
Sbjct: 65 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMA-G 123
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 124 EAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALMGDK 183
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y SL ++ +A IKG +G+NL+ AL LP ++TIK
Sbjct: 184 VDNVPGVEKCGPKTAVKWLEAYGSLAGVVEHAAEIKGKVGENLQAALPQLPLSYDLVTIK 243
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + ESL
Sbjct: 244 TDVDLHTELSDGLESL 259
>gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
Length = 933
Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats.
Identities = 126/256 (49%), Positives = 172/256 (67%), Gaps = 3/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GALYG + MLR+L +Y Y A +FDAKGK
Sbjct: 5 TLLLVDGSSYLYRAYHAMAQLSAPDGAPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGK 64
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLA A
Sbjct: 65 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMA-G 123
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V++ST DKDMAQLV+ ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 124 EAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGDK 183
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y SL ++ +A IKG +G+NL+ AL LP ++TIK
Sbjct: 184 VDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKGKVGENLQAALPQLPLSYDLVTIK 243
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + ESL
Sbjct: 244 TDVDLHAELSDGLESL 259
>gi|419797919|ref|ZP_14323369.1| DNA-directed DNA polymerase [Neisseria sicca VK64]
gi|385696768|gb|EIG27236.1| DNA-directed DNA polymerase [Neisseria sicca VK64]
Length = 929
Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats.
Identities = 126/256 (49%), Positives = 171/256 (66%), Gaps = 3/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GALYG + MLR+L +Y Y A +FDAKGK
Sbjct: 5 TLLLVDGSSYLYRAYHAMAQLSAPDGAPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGK 64
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLA A
Sbjct: 65 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMA-G 123
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 124 EAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALMGDK 183
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y SL ++ +A IKG +G+NL+ AL LP ++TIK
Sbjct: 184 VDNVPGVEKCGPKTAVKWLESYGSLAGVMEHAAEIKGKVGENLQAALPQLPLSYDLVTIK 243
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + ESL
Sbjct: 244 TDVDLHTELSDGLESL 259
>gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
Length = 911
Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats.
Identities = 128/279 (45%), Positives = 185/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS ++RAF+ALP + D P GA+ G MLRKL +Y ++A +FDAK
Sbjct: 14 QAPLVLVDGSSYLFRAFHALPPLTAPDGAPTGAMIGVANMLRKLRADYGPEHMAVVFDAK 73
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKATR MP L QI +H++V+A+G P+L ++GVEADDVI TLA QA
Sbjct: 74 GKTFRDDIYPEYKATRPPMPDELAAQIEPLHELVRAMGLPLLCVEGVEADDVIATLADQA 133
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKD+AQLV+++I L+N + DR + +FGV+PE+IVDY +L+G
Sbjct: 134 AAAGH-DVVISTGDKDLAQLVNDRITLVNTMSGVTLDREGVQEKFGVAPEQIVDYLALMG 192
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K+GPKTA K + +Y L+ I+ A++I G IG+NLR A LP ++++T
Sbjct: 193 DSVDNIPGVDKVGPKTAAKWIAKYGDLDTILEQADDIGGKIGENLRAAAERLPTSRELIT 252
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+K D +L P L ++ D + L+++ +Y +
Sbjct: 253 VKRDVELDAG----PNDLNIREPDHERLLEMVRRYGFTR 287
>gi|347541478|ref|YP_004848904.1| DNA polymerase I [Pseudogulbenkiania sp. NH8B]
gi|345644657|dbj|BAK78490.1| DNA polymerase I [Pseudogulbenkiania sp. NH8B]
Length = 887
Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats.
Identities = 121/238 (50%), Positives = 161/238 (67%), Gaps = 3/238 (1%)
Query: 39 IKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAI 98
+ MLR+L K R Y AC+FDAKGK FR+ LYP YKA R MP L QI +H +V+A
Sbjct: 2 VNMLRRLEKEVRFDYSACVFDAKGKTFRDELYPDYKANRPSMPEELASQITAVHDVVQAS 61
Query: 99 GWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHD 156
GWPIL++ GVEADDVIGTL +QA ++VI+ST DKD+AQLVS + L+N N+ D
Sbjct: 62 GWPILVVDGVEADDVIGTLTRQAEAA-GMQVIVSTGDKDIAQLVSPVVTLVNTMTNETLD 120
Query: 157 RTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
+ +FGV P I+DY +LIGD DN+PGV K GPKTAVK L QY SLE ++ NA I
Sbjct: 121 EGGVKEKFGVPPNLIIDYLTLIGDKVDNVPGVDKCGPKTAVKWLEQYGSLEAVMANAAAI 180
Query: 217 KGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
G +G NLR AL+WLPK ++++TIK D L + E+L+ + +D+ L++LF ++
Sbjct: 181 SGKVGDNLRAALDWLPKGRELITIKCDVPLDAEMPQGMETLLHRERDKPKLIELFTRF 238
>gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
BAA-1200]
Length = 932
Score = 244 bits (624), Expect = 3e-62, Method: Composition-based stats.
Identities = 127/273 (46%), Positives = 177/273 (64%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GALYG + MLR+L +Y Y A +FDAKGK
Sbjct: 8 TLLLVDGSSYLYRAYHAMAQLTAPDGVPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGK 67
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++ YKATR MP +L Q + +V+ +GWP+L++ VEADDVIGTLA Q
Sbjct: 68 NFRHEMFADYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVVPQVEADDVIGTLAVQG-G 126
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V+IST DKDMAQLV+ ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 127 EAGWDVVISTGDKDMAQLVNERVTLVNTMSGETLDTDGVKAKFGVRPDQIRDYLALMGDK 186
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y +L ++ +A IKG +G+NL+ AL+ LP ++TIK
Sbjct: 187 VDNVPGVEKCGPKTAVKWLEAYETLAGVMEHAGEIKGKVGENLQAALSQLPLSYDLVTIK 246
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
TD DL + ESL P L F ++
Sbjct: 247 TDVDLHAELSDGLESLRRTPPKWAQLAADFKRW 279
>gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256]
gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256]
Length = 952
Score = 244 bits (624), Expect = 3e-62, Method: Composition-based stats.
Identities = 125/256 (48%), Positives = 171/256 (66%), Gaps = 3/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GALYG + MLR+L +Y Y A +FDAKGK
Sbjct: 28 TLLLVDGSSYLYRAYHAMAQLSAPDGAPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGK 87
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLA A
Sbjct: 88 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMA-G 146
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 147 EAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALMGDK 206
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y SL ++ +A +KG +G+NL+ AL LP ++TIK
Sbjct: 207 VDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVKGKVGENLQAALPQLPLSYDLVTIK 266
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + ESL
Sbjct: 267 TDVDLHAELSDGLESL 282
>gi|315125371|ref|YP_004067374.1| DNA polymerase I [Pseudoalteromonas sp. SM9913]
gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Pseudoalteromonas sp. SM9913]
Length = 911
Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats.
Identities = 122/279 (43%), Positives = 187/279 (67%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG + ML+ L K Y +++ +FDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVVNMLKSLIKQYDPSHMVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPLHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV PE I+DY +L+G
Sbjct: 126 -SEQQRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPETVVEKFGVGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ +I+NA++IKG IG+ L A++ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLQKYGSLQGVIDNASDIKGKIGEKLAKAIDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQTPNKDELIALYGECEFRR 279
>gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703]
gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703]
Length = 938
Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats.
Identities = 125/257 (48%), Positives = 174/257 (67%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GA+YG + MLR+L +Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGAMYGVLNMLRRLRADYVHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLAK A
Sbjct: 66 KNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAKMA- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 125 SEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A +KG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVKGKVGENLQAALEQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHTELSDGLESL 261
>gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
Length = 911
Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats.
Identities = 124/279 (44%), Positives = 186/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG I ML+ L + Y +++ IFDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLIRQYDPSHMVVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI IH ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
T+ V++ST DKDMAQLV+ + LIN + I D T++ +FGV PE I+DY +L+G
Sbjct: 126 -TEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ ++++A+ IKG IG+ L AL+ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDHASEIKGKIGEKLAAALDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQEPNKDELIALYGECEFRR 279
>gi|414071039|ref|ZP_11407015.1| DNA polymerase I [Pseudoalteromonas sp. Bsw20308]
gi|410806545|gb|EKS12535.1| DNA polymerase I [Pseudoalteromonas sp. Bsw20308]
Length = 911
Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats.
Identities = 124/279 (44%), Positives = 186/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG I ML+ L + Y +++ IFDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLIRQYDPSHMVVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI IH ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV PE I+DY +L+G
Sbjct: 126 -SEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPLTVVEKFGVGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ ++++A+ IKG IG+ L AL+ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDHASEIKGKIGEKLAAALDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ E+ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----ETFKLQEPNKDELIALYGECEFRR 279
>gi|406945643|gb|EKD77083.1| hypothetical protein ACD_42C00486G0006, partial [uncultured
bacterium]
Length = 875
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 125/276 (45%), Positives = 188/276 (68%), Gaps = 7/276 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS ++RA++ALP + P GA+YG I M++KL + Y A +FD KGK
Sbjct: 9 LILIDGSSYLFRAYHALPPLTTSAGTPTGAVYGVINMIKKLMHTHEHDYFAVVFDPKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
R+ L+P+YKA R MP L +QI + ++KA+G P++I GVEADDVIGTLA A K
Sbjct: 69 VRHQLFPAYKANRAVMPDELRVQIAPLFDVIKAMGVPLIIQDGVEADDVIGTLAVYA-EK 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
H +K +IST DKDMAQLV++KI LIN ++++ D + +FGV+P++++DY +L+GD S
Sbjct: 128 HGIKTLISTMDKDMAQLVNDKITLINTMSDRVLDVAGVKEKFGVAPKQMIDYLALMGDTS 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTA L +Y +L++I+ +A++I G IG+NLR LN L +K++TI
Sbjct: 188 DNIPGIPKVGPKTAAMWLEKYKTLDHIVKHADDIPGKIGENLRAHLNDLALSRKLVTI-- 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
DCD+ N+ L + + K L++LF++ + K
Sbjct: 246 DCDVKLNVTL--SDLKITTQQSKKLIELFSQLEFTK 279
>gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114]
gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114]
Length = 935
Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats.
Identities = 125/256 (48%), Positives = 171/256 (66%), Gaps = 3/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GALYG + MLR+L +Y Y A +FDAKGK
Sbjct: 6 TLLLVDGSSYLYRAYHAMAQLTAPDGAPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGK 65
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLA A
Sbjct: 66 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMA-G 124
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 125 EAGWNVVVSTGDKDMAQLVNERVTLVNTMSGEKLDIEGVKEKFGVRPDQIRDYLALMGDK 184
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y SL ++ +A +KG +G+NL+ AL LP ++TIK
Sbjct: 185 VDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEVKGKVGENLQAALPQLPLSYDLVTIK 244
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + ESL
Sbjct: 245 TDVDLHTELSDGLESL 260
>gi|429744545|ref|ZP_19278023.1| DNA-directed DNA polymerase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429162539|gb|EKY04852.1| DNA-directed DNA polymerase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 932
Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats.
Identities = 126/273 (46%), Positives = 177/273 (64%), Gaps = 3/273 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GA+YG + MLR+L +Y Y A +FDAKGK
Sbjct: 8 TLLLVDGSSYLYRAYHAMAQLTAPDGAPTGAMYGVLNMLRRLRADYVHDYCAVVFDAKGK 67
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++ YKATR MP +L Q + +V+ +GWP+L++ VEADDVIGTLA Q
Sbjct: 68 NFRHEMFADYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVVPQVEADDVIGTLAAQG-G 126
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V+IST DKDMAQLV+ ++ L+N + + D + ++FGV P++I DY +L+GD
Sbjct: 127 EAGWDVVISTGDKDMAQLVNERVTLVNTMSGETLDIDGVKAKFGVRPDQIRDYLALMGDK 186
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y +L ++ +A IKG +G+NL+ AL+ LP ++TIK
Sbjct: 187 VDNVPGVEKCGPKTAVKWLEAYETLAGVMEHAGEIKGKVGENLQAALSQLPLSYDLVTIK 246
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
TD DL + ESL P L F ++
Sbjct: 247 TDVDLHAELSDGLESLRRTPPKWAQLAADFKRW 279
>gi|392534064|ref|ZP_10281201.1| DNA polymerase I [Pseudoalteromonas arctica A 37-1-2]
Length = 911
Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats.
Identities = 123/279 (44%), Positives = 186/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG I ML+ L + Y +++ IFDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLIRQYDPSHMVVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI IH ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV PE I+DY +L+G
Sbjct: 126 -SEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ ++++A+ IKG IG+ L AL+ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDHASEIKGKIGEKLAIALDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQEPNKDELIALYGECEFRR 279
>gi|359441073|ref|ZP_09230978.1| DNA polymerase I [Pseudoalteromonas sp. BSi20429]
gi|358037086|dbj|GAA67227.1| DNA polymerase I [Pseudoalteromonas sp. BSi20429]
Length = 911
Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats.
Identities = 123/279 (44%), Positives = 186/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG I ML+ L + Y +++ IFDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLIRQYDPSHMVVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI IH ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV PE I+DY +L+G
Sbjct: 126 -SEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ ++++A+ IKG IG+ L AL+ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDHASEIKGKIGEKLAIALDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQEPNKDELIALYGECEFRR 279
>gi|407938083|ref|YP_006853724.1| DNA polymerase I [Acidovorax sp. KKS102]
gi|407895877|gb|AFU45086.1| DNA polymerase I [Acidovorax sp. KKS102]
Length = 932
Score = 243 bits (619), Expect = 8e-62, Method: Composition-based stats.
Identities = 128/288 (44%), Positives = 182/288 (63%), Gaps = 11/288 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPV----GALYGTIKMLRKLYKNYRATYIACI 57
+ TL+LVDGSS +YRAF+A+PD+R + P GA+ G I M++ L K A Y C+
Sbjct: 4 KKTLVLVDGSSYLYRAFHAMPDLRAVPGDPTSPATGAIRGMINMMQALRKEVVADYAVCV 63
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDA G FR+ LY YKATR MP +L QI IH++V +GW ++ + GVEADDVI T+
Sbjct: 64 FDASGPTFRDALYTEYKATRSPMPDDLRSQIEPIHEVVDLLGWKVVAVPGVEADDVIATM 123
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
A A + ++VI+S+ DKD++QLV+ I +I+ + K D + + FGV P +VDY
Sbjct: 124 AHMAAAQ-GIEVIVSSGDKDLSQLVNEHITIIDTMSGKRRDVAGVTAEFGVPPALMVDYQ 182
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL--NWLPK 233
+L+GD DN+PGV K+GPKTA K L +Y SL+N+I NA+ IKGV G NLR A+ L
Sbjct: 183 ALVGDTVDNVPGVTKVGPKTAAKWLEEYGSLDNLIANADAIKGVAGNNLREAIASGQLAL 242
Query: 234 LKKILTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
++++T+KTDC L I +P + + L D + L+ + KY L
Sbjct: 243 SRQLVTMKTDCALADYIPGLPAFDDITLDAPDNEGLLPFYEKYGFKGL 290
>gi|345871043|ref|ZP_08822992.1| DNA polymerase I [Thiorhodococcus drewsii AZ1]
gi|343921197|gb|EGV31921.1| DNA polymerase I [Thiorhodococcus drewsii AZ1]
Length = 900
Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats.
Identities = 128/280 (45%), Positives = 173/280 (61%), Gaps = 7/280 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVD S ++RA++ALP + N GAL G + MLRKL +R YI IFDA
Sbjct: 4 QYPLILVDASGYLFRAYHALPKLTNSKGEATGALIGVLNMLRKLIDAHRPDYIGVIFDAA 63
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GKNFRN LYP YKA R MP +L QI + +++A+G P+L+I VEADDVIGTLA QA
Sbjct: 64 GKNFRNDLYPDYKAHRPPMPEDLREQIQPLQDIIRAMGLPLLVIPEVEADDVIGTLATQA 123
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ +IST DKDMAQLV ++ L+N + D + +FGV PE+IVDY SL+G
Sbjct: 124 -AEQGIQTLISTGDKDMAQLVGERVTLVNTMTDTWLDPEGVREKFGVPPERIVDYLSLMG 182
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D +DN+PGV K GPKTA K + +Y L+ +I NA IKG +G+NLR L+ L +++ T
Sbjct: 183 DSADNVPGVPKCGPKTAAKWIGEYGDLDGVITNAERIKGKVGENLRSVLDQLQLARQLTT 242
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
IK D L P L P D + L + + + +L
Sbjct: 243 IKRDVQLDLG----PADLAPTPPDRETLRTWYARIESRRL 278
>gi|359455121|ref|ZP_09244368.1| DNA polymerase I [Pseudoalteromonas sp. BSi20495]
gi|358047836|dbj|GAA80617.1| DNA polymerase I [Pseudoalteromonas sp. BSi20495]
Length = 911
Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats.
Identities = 123/279 (44%), Positives = 186/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG I ML+ L + Y +++ IFDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLIRQYDPSHMVVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI IH ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV PE I+DY +L+G
Sbjct: 126 -SEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ ++++A+ IKG IG+ L AL+ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDHASEIKGKIGEKLAAALDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQEPNKDELIALYGECEFRR 279
>gi|359431675|ref|ZP_09222097.1| DNA polymerase I [Pseudoalteromonas sp. BSi20652]
gi|357921674|dbj|GAA58346.1| DNA polymerase I [Pseudoalteromonas sp. BSi20652]
Length = 911
Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats.
Identities = 123/279 (44%), Positives = 186/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG I ML+ L + Y +++ IFDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLIRQYDPSHMVVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI IH ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV PE I+DY +L+G
Sbjct: 126 -SEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ ++++A+ IKG IG+ L AL+ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDHASEIKGKIGEKLAAALDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQEPNKDELIALYGECEFRR 279
>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
Length = 920
Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats.
Identities = 121/274 (44%), Positives = 186/274 (67%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS +YRAF+A+P + + P GA+ G + MLRKL + + +A IFDAKGK
Sbjct: 7 IVLVDGSSYLYRAFHAMPPLTTSNGQPTGAIKGVLNMLRKLQADVKPLRMAVIFDAKGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ ++P YKA R MP +L QI ++ ++A+G P++ I GVEADDVIGT +A ++
Sbjct: 67 FRDDIFPEYKAQRPPMPDDLRAQIEPLYDCIRALGLPLISISGVEADDVIGTYCVEA-SR 125
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+V++ST DKD+AQLV+ + LIN N+ + DR +I +FG+ PE+IVDY +L+GD
Sbjct: 126 LGERVLVSTGDKDIAQLVNEHVTLINTMNDTLLDRDGVIEKFGLPPEQIVDYLTLVGDSV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTA+K L+ Y SL+N+I +A+ IKG +G+NLR +L +P +++ TIK
Sbjct: 186 DNIPGVPKCGPKTALKWLDDYGSLDNLIAHADEIKGKVGENLRASLEQIPLSRQLATIKC 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L + ++ L L+ + + L++L+ + +
Sbjct: 246 DVPLAQGVM----ELQLENANTEKLVELYQQLEF 275
>gi|344343099|ref|ZP_08773969.1| DNA polymerase I [Marichromatium purpuratum 984]
gi|343805651|gb|EGV23547.1| DNA polymerase I [Marichromatium purpuratum 984]
Length = 903
Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats.
Identities = 129/277 (46%), Positives = 175/277 (63%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS ++RA++A+P + N P GAL G + MLRKL + YR Y+A +FDA GK
Sbjct: 7 LILVDGSSYLFRAYHAMPKLTNSRGEPTGALIGVLNMLRKLIETYRPDYLAVVFDASGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN LY YKA R MP +L QI +H +++ +G +L + GVEADDVIGTLA QA
Sbjct: 67 FRNDLYADYKAHRPPMPEDLREQIAPLHTIIETMGLALLCVPGVEADDVIGTLATQAAAA 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++ +IST DKDMAQLV +++ LIN + + D + ++GV P +IVDY SL+GD
Sbjct: 127 -GIRTLISTGDKDMAQLVDDRVHLINTMTDALLDAAGVEEKYGVPPARIVDYLSLMGDSV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTAVK L + L+ +I NA IKG +G NLR AL+ LP +++ TIK
Sbjct: 186 DNVPGVPKCGPKTAVKWLAAHGDLDGVIANAAVIKGKVGDNLRAALDQLPLSRQLTTIKC 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D L P L+ D + L + F + + KL
Sbjct: 246 DVALPLG----PTELVPGTPDRERLREWFERIESRKL 278
>gi|392555749|ref|ZP_10302886.1| DNA polymerase I [Pseudoalteromonas undina NCIMB 2128]
Length = 911
Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats.
Identities = 122/279 (43%), Positives = 186/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG + ML+ L K Y +++ +FDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVVNMLKSLIKQYDPSHMVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPLHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV PE I+DY +L+G
Sbjct: 126 -SEQQRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPDTVVEKFGVGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ +I+NA +IKG IG+ L A++ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLQKYGSLQGVIDNAADIKGKIGEKLAKAIDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQTPNKDELIALYGECEFRR 279
>gi|359438125|ref|ZP_09228166.1| DNA polymerase I [Pseudoalteromonas sp. BSi20311]
gi|358027176|dbj|GAA64415.1| DNA polymerase I [Pseudoalteromonas sp. BSi20311]
Length = 911
Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats.
Identities = 122/279 (43%), Positives = 186/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG + ML+ L K Y +++ +FDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVVNMLKSLIKQYDPSHMVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPLHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV PE I+DY +L+G
Sbjct: 126 -SEQQRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPDTVVEKFGVGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ +I+NA +IKG IG+ L A++ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLQKYGSLQGVIDNAADIKGKIGEKLAKAIDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQTPNKDELIALYGECEFRR 279
>gi|359446945|ref|ZP_09236573.1| DNA polymerase I [Pseudoalteromonas sp. BSi20439]
gi|358039199|dbj|GAA72822.1| DNA polymerase I [Pseudoalteromonas sp. BSi20439]
Length = 911
Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats.
Identities = 122/279 (43%), Positives = 186/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG + ML+ L K Y +++ +FDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVVNMLKSLIKQYDPSHMVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPLHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV PE I+DY +L+G
Sbjct: 126 -SEQQRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPDTVVEKFGVGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ +I+NA +IKG IG+ L A++ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLQKYGSLQGVIDNAADIKGKIGEKLAKAIDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQTPNKDELIALYGECEFRR 279
>gi|420555009|ref|ZP_15052116.1| DNA polymerase I, partial [Yersinia pestis PY-03]
gi|391438600|gb|EIQ99332.1| DNA polymerase I, partial [Yersinia pestis PY-03]
Length = 806
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/289 (44%), Positives = 179/289 (61%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N LLLVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLLLVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L +QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + +N + I + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTL---TFRGAKTMSAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + L + P D+K L QLF++Y+ +
Sbjct: 242 VAYLSYKLATIKTDVELDVTC----DELTVSPPDDKQLHQLFSRYEFKR 286
>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
Length = 940
Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats.
Identities = 121/278 (43%), Positives = 187/278 (67%), Gaps = 7/278 (2%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
+L+LVDGSS ++RAF+ALP + D P GA++G I ML+KL + +A +FDA G
Sbjct: 24 SLILVDGSSFLFRAFHALPPLTAPDGTPTGAIHGVINMLQKLRREENPDRMAVVFDAPGP 83
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ LYP YKA R +P +L +QI +H++V+A+G+P+L + GVEADDVIGTL QA
Sbjct: 84 TFRDELYPEYKAQRPPLPDDLRVQIEPVHELVRALGFPLLCVSGVEADDVIGTLMHQA-R 142
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
++ V+++T DKD AQLV+ I L+N N + D I +++G++ + +DY +L+GD
Sbjct: 143 QNGESVLVATADKDFAQLVTEGIRLVNTMTNTVLDEAAIEAKYGITAAQFIDYLTLVGDT 202
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV GPKTA K LN++ SL+N++ +A+ IKG +G++LR A +LP ++++TI+
Sbjct: 203 VDNVPGVPGCGPKTAAKWLNEWQSLDNLMAHADQIKGKVGESLRAAKEFLPIGRELVTIR 262
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
TDCDL +++ + + +P D + L K+ LN L
Sbjct: 263 TDCDLP---IALADLAVEEP-DVDAVRALAEKFGLNTL 296
>gi|417956892|ref|ZP_12599826.1| DNA polymerase I [Neisseria weaveri ATCC 51223]
gi|343969638|gb|EGV37848.1| DNA polymerase I [Neisseria weaveri ATCC 51223]
Length = 907
Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats.
Identities = 127/257 (49%), Positives = 173/257 (67%), Gaps = 10/257 (3%)
Query: 28 DNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQ 87
D P GALYG + MLR+L +Y Y A +FDAKG+NFR+ +YP YKATR MP L Q
Sbjct: 8 DGTPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGENFRHKMYPDYKATRPPMPDELRPQ 67
Query: 88 INLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIA 147
++ +MV+ +GWP+LI+ VEADDVIGTLAKQ V+IST DKDMAQLVS +
Sbjct: 68 AEMLPEMVRLMGWPVLIVPDVEADDVIGTLAKQG-EAAGWNVVISTGDKDMAQLVSEHVT 126
Query: 148 LIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNS 205
L+N +N+ D + ++FGV P++I+DY +LIGD DN+PGV K GPKTAVK L+QY +
Sbjct: 127 LVNTMSNEKLDIEGVKNKFGVRPDQIIDYLTLIGDKVDNVPGVDKCGPKTAVKWLDQYGT 186
Query: 206 LENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESL-ILQPKDE 264
L+N+++NA+ IKG +G+NL+ AL LP +++TIKTD DL ++ ESL PK
Sbjct: 187 LQNVMDNASEIKGKVGENLQAALPQLPLSYQLVTIKTDVDLHGDLSDGLESLRRTTPKWS 246
Query: 265 KLLMQLFNKYKLNKLNF 281
+L ++ +LNF
Sbjct: 247 QLAVE------FKRLNF 257
>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Alteromonadales bacterium TW-7]
gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Alteromonadales bacterium TW-7]
Length = 911
Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats.
Identities = 122/279 (43%), Positives = 185/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG I ML+ L + Y +++ +FDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLIRQYDPSHMVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI IH ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV P+ I+DY +L+G
Sbjct: 126 -SEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDTISDPDTVVEKFGVGPDLIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ +++NA IKG IG+ L AL+ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLQKYGSLQGVMDNAGEIKGKIGEKLANALDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQEPNKDELIALYGECEFRR 279
>gi|359451863|ref|ZP_09241241.1| DNA polymerase I [Pseudoalteromonas sp. BSi20480]
gi|358042321|dbj|GAA77490.1| DNA polymerase I [Pseudoalteromonas sp. BSi20480]
Length = 911
Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats.
Identities = 122/279 (43%), Positives = 185/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG I ML+ L + Y +++ +FDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLIRQYDPSHMVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI IH ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV P+ I+DY +L+G
Sbjct: 126 -SEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPDTVVEKFGVGPDLIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ +++NA IKG IG+ L AL+ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLQKYGSLQGVMDNAGEIKGKIGEKLANALDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQEPNKDELIALYGECEFRR 279
>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella novicida U112]
gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella novicida FTE]
gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
Length = 897
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/277 (44%), Positives = 182/277 (65%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I ML+KL Y Y+A +FDAKGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA RK + L +QI +HQ+++ +G+ ++I GVEADDVIGTLA Q + K
Sbjct: 64 FRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLA-QKLQK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++IIST DKDMAQLV++ I L ++ N D ++ ++ +SP +I+DY +L+GD S
Sbjct: 123 QGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLALVGDTS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTAVK L Y +++ II N IKG +G+NLR ++ L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + E L + D+ L++ + +Y+ L
Sbjct: 243 DLELDLTV----EDLKCKAADKAYLIEAYTRYEFKSL 275
>gi|392539918|ref|ZP_10287055.1| DNA polymerase I [Pseudoalteromonas marina mano4]
Length = 911
Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats.
Identities = 122/279 (43%), Positives = 185/279 (66%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG I ML+ L + Y +++ +FDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLIRQYDPSHMVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI IH ++KA+G+P++ I+GVEADDVIGT A+ A
Sbjct: 66 GKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGTFARIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V++ST DKDMAQLV+ + LIN + I D T++ +FGV P+ I+DY +L+G
Sbjct: 126 -SEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDTISDPDTVVEKFGVGPDLIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV+ GPKTAVK L +Y SL+ +++NA IKG IG+ L AL+ LP ++ T
Sbjct: 185 DKVDNIPGVEGCGPKTAVKWLQKYGSLQGVMDNAGEIKGKIGEKLANALDHLPLSYELAT 244
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IK D ++ ++ ++ LQ ++ L+ L+ + + +
Sbjct: 245 IKCDVEVESDL----DTFKLQEPNKDELIALYGECEFRR 279
>gi|337754632|ref|YP_004647143.1| DNA polymerase I [Francisella sp. TX077308]
gi|336446237|gb|AEI35543.1| DNA polymerase I [Francisella sp. TX077308]
Length = 896
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/277 (43%), Positives = 185/277 (66%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP++ N P GA+ G I ML+KL Y Y+ +FD KGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPNLTNSQGEPTGAIIGVINMLKKLPAMYDTEYVTVVFDPKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +YP YKA RK M L +QI +HQ+++ +G+P++I GVEADDVIGTLA+ + +
Sbjct: 64 FRHEMYPEYKANRKAMDDELRVQIQPLHQIIENMGFPLIIKDGVEADDVIGTLARD-LEQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
VIIST DKDMAQLV++ + L ++ N D +I ++ + P++I+DY +L+GD S
Sbjct: 123 QGYDVIISTGDKDMAQLVTDNVTLYDSMKNVTTDVVGVIEKYQIRPDQIIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTA+K L +Y+ ++ +I N +NIKG +G++LR + L K+ TIK
Sbjct: 183 DNIPGVPKVGPKTAIKWLQEYDDIDGVIANQDNIKGKVGESLRNNIELLKLSYKLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L +I E L + +++ L ++F +Y+ L
Sbjct: 243 DVELNLSI----EDLKCKNANKEYLYEVFTRYEFKSL 275
>gi|345875809|ref|ZP_08827598.1| DNA polymerase I [Neisseria weaveri LMG 5135]
gi|343968507|gb|EGV36735.1| DNA polymerase I [Neisseria weaveri LMG 5135]
Length = 907
Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats.
Identities = 126/257 (49%), Positives = 173/257 (67%), Gaps = 10/257 (3%)
Query: 28 DNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQ 87
D P GALYG + MLR+L +Y Y A +FDAKG+NFR+ +YP YKATR MP L Q
Sbjct: 8 DGTPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGENFRHKMYPDYKATRPPMPGELRPQ 67
Query: 88 INLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIA 147
++ ++V+ +GWP+LI+ VEADDVIGTLAKQ V+IST DKDMAQLVS +
Sbjct: 68 AEMLPELVRLMGWPVLIVPDVEADDVIGTLAKQG-EAAGWNVVISTGDKDMAQLVSEHVT 126
Query: 148 LIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNS 205
L+N +N+ D + ++FGV P++I+DY +LIGD DN+PGV K GPKTAVK L+QY +
Sbjct: 127 LVNTMSNEKLDIEGVKNKFGVCPDQIIDYLTLIGDKVDNVPGVDKCGPKTAVKWLDQYGT 186
Query: 206 LENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESL-ILQPKDE 264
L+N+++NA+ IKG +G+NL+ AL LP +++TIKTD DL ++ ESL PK
Sbjct: 187 LQNVMDNASEIKGKVGENLQAALPQLPLSYQLVTIKTDVDLHGDLSDGLESLRRTTPKWS 246
Query: 265 KLLMQLFNKYKLNKLNF 281
+L ++ +LNF
Sbjct: 247 QLAVE------FKRLNF 257
>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
Length = 897
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 123/277 (44%), Positives = 182/277 (65%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I ML+KL Y Y+A +FDAKGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA RK + L +QI +HQ+++ +G+ ++I GVEADDVIGTLAK + K
Sbjct: 64 FRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAKN-LQK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++IIST DKDMAQLV++ I L ++ N D ++ ++ +SP +I+DY +L+GD S
Sbjct: 123 QGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLALMGDAS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTAVK L Y +++ II N IKG +G+NLR ++ L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + E L + D+ L++ + +Y+ L
Sbjct: 243 DLELDLTV----EDLKCKAADKAYLIEAYTRYEFKSL 275
>gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
NRL30031/H210]
gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
NRL30031/H210]
Length = 937
Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats.
Identities = 125/257 (48%), Positives = 173/257 (67%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ D P GA+YG + MLR+L +Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGAMYGVLNMLRRLRADYVHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++ YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLA A
Sbjct: 66 KNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMA- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 125 GEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL+ ++ +A+ IKG +G+NLR AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKGKVGENLRAALPRLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHTELSDGIESL 261
>gi|422939217|ref|YP_007012364.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
gi|407294368|gb|AFT93274.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
Length = 897
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 183/277 (66%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I ML+KL Y Y+A +FDAKGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA RK + L +QI +HQ+++ +G+ ++I GVEADDVIGTLA Q + K
Sbjct: 64 FRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLA-QKLQK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ ++IIST DKDMAQLV++ I L ++ N D ++ ++ +SP +++DY +L+GD S
Sbjct: 123 QDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTAVK L Y +++ II N IKG +G+NLR ++ L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + E L + D+ L++ + +Y+ L
Sbjct: 243 DLELDLTV----EDLKCKAADKAYLIEAYTRYEFKSL 275
>gi|357415770|ref|YP_004928790.1| DNA polymerase I [Pseudoxanthomonas spadix BD-a59]
gi|355333348|gb|AER54749.1| DNA polymerase I [Pseudoxanthomonas spadix BD-a59]
Length = 921
Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats.
Identities = 132/277 (47%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAAGEPTGALFGVVNMLRATLKE-RPEYIAFVIDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP+YKA R MP L Q+ + +V A+G IL ++GVEADDVIGTLA Q +
Sbjct: 63 FRDALYPAYKANRAAMPDQLRAQVEPMCAIVHALGIDILRVEGVEADDVIGTLALQGHAE 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L+V IST+DKD AQLV + L+N +++ ++ +FGV PE+IVD SL+GD
Sbjct: 123 -GLQVTISTSDKDFAQLVRPGVELVNTMSGSRMDSDAAVMDKFGVRPEQIVDLLSLMGDS 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTA K L+QY SLE +I NA +IKG IG+NLR AL LP + ++TI+
Sbjct: 182 VDNVPGVDKCGPKTAAKWLSQYGSLEGVIANAGSIKGKIGENLRAALERLPLNRTLVTIR 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L L+L+ + L L+ +Y N+
Sbjct: 242 TDVPLQ----VAARDLVLREQHVDDLRALYTRYGFNQ 274
>gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 896
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 121/277 (43%), Positives = 183/277 (66%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP++ N P GA+ G I ML+KL Y Y+A +FD KGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPNLTNSQGEPTGAIIGVINMLKKLPAMYDTEYVAVVFDPKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +YP YKA RK M L +QI +HQ+++ +G+P++I GVEADDVIGTLA+ + +
Sbjct: 64 FRHEMYPEYKANRKAMDDELRVQIQPLHQIIENMGFPLIIKDGVEADDVIGTLARD-LEQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
VIIST DKDMAQLV++ + L ++ N D ++ ++ + P++I+DY +L+GD S
Sbjct: 123 QGYDVIISTGDKDMAQLVTDNVVLYDSMKNVTTDFAGVLEKYQIRPDQIIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTA+K L +Y +E II N + I G +G+NLR + L K+ TIK
Sbjct: 183 DNIPGIPKVGPKTAIKWLQEYQDIEGIIANQDKITGKVGENLRNNIELLKLSYKLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L +I E L + +++ L ++F +Y+ L
Sbjct: 243 DVELNLSI----EDLKCKNANKEYLYEVFTRYEFKSL 275
>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
Length = 897
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 183/277 (66%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I ML+KL Y Y+A +FDAKGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA RK + L +QI +HQ+++ +G+ ++I GVEADDVIGTLA Q + K
Sbjct: 64 FRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLA-QKLQK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ ++IIST DKDMAQLV++ I L ++ N D ++ ++ +SP +++DY +L+GD S
Sbjct: 123 QDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTAVK L Y +++ II N IKG +G+NLR ++ L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + E L + D+ L++ + +Y+ L
Sbjct: 243 DLELDLTV----EDLKCKAADKAYLIEAYTRYEFKSL 275
>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
WY96-3418]
gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
gi|421751048|ref|ZP_16188106.1| DNA polymerase I [Francisella tularensis subsp. tularensis AS_713]
gi|421752904|ref|ZP_16189914.1| DNA polymerase I [Francisella tularensis subsp. tularensis 831]
gi|421756636|ref|ZP_16193539.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700103]
gi|421758503|ref|ZP_16195349.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70102010]
gi|423051306|ref|YP_007009740.1| DNA polymerase I [Francisella tularensis subsp. holarctica F92]
gi|424673771|ref|ZP_18110702.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70001275]
gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|409088923|gb|EKM88979.1| DNA polymerase I [Francisella tularensis subsp. tularensis 831]
gi|409089034|gb|EKM89088.1| DNA polymerase I [Francisella tularensis subsp. tularensis AS_713]
gi|409092195|gb|EKM92173.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70102010]
gi|409093375|gb|EKM93321.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700103]
gi|417435546|gb|EKT90436.1| DNA polymerase I [Francisella tularensis subsp. tularensis
70001275]
gi|421952028|gb|AFX71277.1| DNA polymerase I [Francisella tularensis subsp. holarctica F92]
Length = 897
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 183/277 (66%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I ML+KL Y Y+A +FDAKGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA RK + L +QI +HQ+++ +G+ ++I GVEADDVIGTLA Q + K
Sbjct: 64 FRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLA-QKLQK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ ++IIST DKDMAQLV++ I L ++ N D ++ ++ +SP +++DY +L+GD S
Sbjct: 123 QDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTAVK L Y +++ II N IKG +G+NLR ++ L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + E L + D+ L++ + +Y+ L
Sbjct: 243 DLELDLTV----EDLKCKAADKAYLIEAYTRYEFKSL 275
>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
Length = 897
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 183/277 (66%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I ML+KL Y Y+A +FDAKGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA RK + L +QI +HQ+++ +G+ ++I GVEADDVIGTLA Q + K
Sbjct: 64 FRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLA-QKLQK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ ++IIST DKDMAQLV++ I L ++ N D ++ ++ +SP +++DY +L+GD S
Sbjct: 123 QDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTAVK L Y +++ II N IKG +G+NLR ++ L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + E L + D+ L++ + +Y+ L
Sbjct: 243 DLELDLTV----EDLKCKAADKAYLIEAYTRYEFKSL 275
>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|379716484|ref|YP_005304820.1| DNA polymerase I [Francisella tularensis subsp. tularensis TIGB03]
gi|379725167|ref|YP_005317353.1| DNA polymerase I [Francisella tularensis subsp. tularensis TI0902]
gi|385793869|ref|YP_005830275.1| DNA polymerase I [Francisella tularensis subsp. tularensis
NE061598]
gi|421754721|ref|ZP_16191687.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700075]
gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
NE061598]
gi|377826616|gb|AFB79864.1| DNA polymerase I [Francisella tularensis subsp. tularensis TI0902]
gi|377828161|gb|AFB78240.1| DNA polymerase I [Francisella tularensis subsp. tularensis TIGB03]
gi|409090484|gb|EKM90500.1| DNA polymerase I [Francisella tularensis subsp. tularensis
80700075]
Length = 897
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 183/277 (66%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I ML+KL Y Y+A +FDAKGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA RK + L +QI +HQ+++ +G+ ++I GVEADDVIGTLA Q + K
Sbjct: 64 FRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLA-QKLQK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ ++IIST DKDMAQLV++ I L ++ N D ++ ++ +SP +++DY +L+GD S
Sbjct: 123 QDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTAVK L Y +++ II N IKG +G+NLR ++ L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + E L + D+ L++ + +Y+ L
Sbjct: 243 DLELDLTV----EDLKCKAADKAYLIEAYTRYEFKSL 275
>gi|385793571|ref|YP_005826547.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1]
Length = 897
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 123/277 (44%), Positives = 182/277 (65%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I ML+KL Y Y+A +FDAKGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA RK + L +QI +HQ+++ +G+ ++I GVEADDVIGTLAK + K
Sbjct: 64 FRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAKN-LQK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++IIST DKDMAQLV++ I L ++ N D ++ ++ +SP +I+DY +L+GD S
Sbjct: 123 QGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLALMGDAS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTAVK L Y +++ II N IKG +G+NLR ++ L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + E L + D+ L++ + +Y+ L
Sbjct: 243 DLELDLTV----EDLKCKAADKAYLIEAYTRYEFKSL 275
>gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102]
gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102]
Length = 930
Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats.
Identities = 124/257 (48%), Positives = 173/257 (67%), Gaps = 4/257 (1%)
Query: 4 TLLLVDGSSCIYRAFYAL-PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TLLLVDGSS +YRA++A+ ++ + P GA+YG + MLR+L +Y Y A +FDAKG
Sbjct: 6 TLLLVDGSSYLYRAYHAMGQNLSAPNGAPTGAMYGVLNMLRRLRADYVHDYCAVVFDAKG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLAK A
Sbjct: 66 KNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAKMA- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 125 GEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALMGD 184
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV+K GPKTAVK L Y SL ++ +A +KG +G+NL+ AL LP ++TI
Sbjct: 185 KVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVKGKVGENLQAALPQLPLSYDLVTI 244
Query: 241 KTDCDLTKNIVSIPESL 257
KTD DL + ESL
Sbjct: 245 KTDVDLHTELSDGLESL 261
>gi|378824230|ref|ZP_09846756.1| 5'-3' exonuclease, SAM domain protein, partial [Sutterella
parvirubra YIT 11816]
gi|378596944|gb|EHY30306.1| 5'-3' exonuclease, SAM domain protein, partial [Sutterella
parvirubra YIT 11816]
Length = 317
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 182/281 (64%), Gaps = 5/281 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
+ +LL+DGS+ ++RAF+ LP++ P GA+ G + ML ++ + Y A +FDA G
Sbjct: 2 SKILLIDGSNYLFRAFHGLPELSTSRGEPTGAMKGFLGMLGRVAGMVKPDYAAIVFDAPG 61
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
KNFR+ +YP YKA R MP +L +QI +H +++A+GWP+LII GVEADDVI +LA+ A
Sbjct: 62 KNFRHEMYPEYKANRPPMPDDLRVQIAPLHGVLEALGWPLLIIPGVEADDVIASLAEVA- 120
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V+I+T DKDMAQLV +++ L+N N +DR +I ++GV PE I+DY +L+GD
Sbjct: 121 KRDGHDVVIATGDKDMAQLVEDRVILLNTMNTTFYDREGVIEKYGVPPEHIIDYLALMGD 180
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PG++K GPKTA K +N+ ++ I +A+ + G IG+NLR L +L + K++TI
Sbjct: 181 KVDNVPGIEKCGPKTAAKWVNEIGGIDAIKAHAHEVTGKIGENLRKGLGFLDEAVKLVTI 240
Query: 241 KTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKLNF 281
K DC + + E L + D+ L +++++++
Sbjct: 241 KRDCVVPGAEKT--EDLAFRAPDDAALSAFAHRWEMSRAGL 279
>gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 933
Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats.
Identities = 133/277 (48%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA QA
Sbjct: 63 FRDALYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV P++IVD +L+GD
Sbjct: 123 -GLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP ++++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNTETLAVLYARYGFTQ 274
>gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 686
Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 184/295 (62%), Gaps = 21/295 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L G
Sbjct: 126 ANDGK-NVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL SL+ I N + + + + R A PKL+
Sbjct: 185 DASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL---SFRGAKTLAPKLEAEKD 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLM 283
+ TIKTD +L E L++QP+ L++LF +Y+ + LN +M
Sbjct: 242 AADLSYLLATIKTDVELE----VTHEQLVVQPQKRDELVELFGRYEFKRWLNEVM 292
>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 896
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/277 (43%), Positives = 183/277 (66%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP++ N P GA+ G I ML+KL Y Y+A +FD KGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPNLTNSQGEPTGAIIGVINMLKKLPAMYNTEYVAVVFDPKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +YP YKA RK M L +QI +HQ+++ +G+P++I GVEADDVIGTLA+ + +
Sbjct: 64 FRHEMYPEYKANRKAMDDELRVQIQPLHQIIENMGFPLIIKDGVEADDVIGTLARD-LEQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
VIIST DKDMAQLV++ + L ++ N D ++ ++ + P++I+DY +L+GD S
Sbjct: 123 QGYDVIISTGDKDMAQLVTDNVVLYDSMKNITTDIAGVLEKYQIRPDQIIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTA+K L +Y +E II N + I G +G+NLR + L K+ TIK
Sbjct: 183 DNIPGIPKVGPKTAIKWLQEYQDIEGIIANQDKITGKVGENLRNNIELLKLSYKLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L +I E L + +++ L ++F +Y+ L
Sbjct: 243 DVELNLSI----EDLKCKNANKEYLYEVFTRYEFKSL 275
>gi|384083000|ref|ZP_09994175.1| DNA polymerase A [gamma proteobacterium HIMB30]
Length = 896
Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats.
Identities = 130/283 (45%), Positives = 179/283 (63%), Gaps = 11/283 (3%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M L+LVDGSS +YRAF+ALP + PVGA+ G I ML KL + A + +FDA
Sbjct: 1 MPAPLVLVDGSSYLYRAFHALPPLTTSTGQPVGAIRGVISMLNKLADSTGAERMVVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GK FR+ +Y YKA R+KMP L QI +H +VKA G+P+L + GVEADDVIGTLAK
Sbjct: 61 SGKTFRDDMYAEYKANREKMPGELREQIEPLHAIVKAQGFPLLAVPGVEADDVIGTLAKM 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTT----IISRFGVSPEKIVDYFS 176
A V+IST DKD+AQLV++K+ L+N + D T + +FGV PE+I+D+ +
Sbjct: 121 AEAAGE-SVLISTGDKDLAQLVTDKVTLVNT--MSDTTLTPAGVSEKFGVPPERIIDFLA 177
Query: 177 LIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK 236
L GD DN+PG+ K GPKTA K LN Y +L+ ++ +AN+I G IG+ R ++ LP K
Sbjct: 178 LTGDSVDNVPGIPKCGPKTAAKWLNAYGTLDGVVASANDIGGKIGETFREHMHVLPLSKA 237
Query: 237 ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
++TIKTDC+L + E L D + L L+ + +LN+
Sbjct: 238 LVTIKTDCELPVGL----EELSRSGPDLERLTALYTELELNQF 276
>gi|381150379|ref|ZP_09862248.1| DNA polymerase I [Methylomicrobium album BG8]
gi|380882351|gb|EIC28228.1| DNA polymerase I [Methylomicrobium album BG8]
Length = 901
Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats.
Identities = 127/272 (46%), Positives = 176/272 (64%), Gaps = 7/272 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRA++ALP + + A+YG ML+K+ +Y + A +FDA G N
Sbjct: 7 LILVDGSSFLYRAYHALPPLTSPQGLATNAVYGVSNMLKKMLGDYPDAHFAVVFDAPGNN 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L QI +H+MVKA+G P++I G+EADDV+G LA++A K
Sbjct: 67 FRHDLYEHYKAHRPPMPDDLRCQIEPLHRMVKAMGLPLIIEAGIEADDVLGCLARKA-EK 125
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+IIST DKDMAQLV+ I+L N NN +I +FGV P++IVDY +LIGD
Sbjct: 126 EGFDIIISTGDKDMAQLVNEHISLENTMNNVRMGVQGVIEKFGVRPDQIVDYLALIGDTV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPKTA K L QY +L+N++ +A I G IG+NLR +L+ LP K++ TIK
Sbjct: 186 DNIPGVPKVGPKTAAKWLEQYGTLDNLVAHAAEITGKIGENLRASLDQLPLSKQLATIKC 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
+ +L I L +P D L L +++
Sbjct: 246 EVELPYEI----GELTRKPIDPAELRPLLSEF 273
>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
Length = 897
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 182/277 (65%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I ML+KL Y Y+A +FDAKGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA RK + L +QI +HQ+++ +G+ ++I GVEADDVIGTLAK + K
Sbjct: 64 FRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAKN-LQK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++IIST DKDMAQLV++ I L ++ N D ++ ++ +SP +++DY +L+GD S
Sbjct: 123 QGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTAVK L Y +++ II N IKG +G+NLR ++ L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + E L + D+ L++ + +Y+ L
Sbjct: 243 DLELDLTV----EDLKCKAADKAYLIEAYTRYEFKSL 275
>gi|350551678|ref|ZP_08920891.1| DNA polymerase I [Thiorhodospira sibirica ATCC 700588]
gi|349796816|gb|EGZ50599.1| DNA polymerase I [Thiorhodospira sibirica ATCC 700588]
Length = 928
Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats.
Identities = 128/268 (47%), Positives = 173/268 (64%), Gaps = 3/268 (1%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRAF+ALP +R P GA+ G I MLR L + A +A IFDAKGKN
Sbjct: 10 LILVDGSSYLYRAFHALPPLRTRQGQPTGAIKGVIAMLRSLRASDPAALMAVIFDAKGKN 69
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA R MP L+ QI + +++ A+G L + VEADDVI TL QA+ +
Sbjct: 70 FRHSLYPDYKAQRPPMPDELVAQIAPLQEVIDAMGLLRLAVPEVEADDVIATLTTQALQR 129
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
L+V+IST DKD+AQLV +I+L+N +++ D + +FGVSP +IVDY SLIGD +
Sbjct: 130 -GLEVLISTGDKDLAQLVGPRISLLNTMSDERLDEAGVWQKFGVSPAQIVDYLSLIGDKA 188
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+GPK A K L +Y SLE II +A +I G +G+NLR L LP + ++ +KT
Sbjct: 189 DNIPGVPKVGPKMASKWLAEYGSLEGIIEHAADISGKVGENLRATLPQLPLYQSLIRVKT 248
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQL 270
D L + + QP+ +L L
Sbjct: 249 DLPLDIDWTRLEPGAADQPRLRELFTAL 276
>gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB 702]
gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB 4381]
Length = 933
Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats.
Identities = 133/277 (48%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA QA
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV P++IVD +L+GD
Sbjct: 123 -GLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDEAVIAKFGVRPDQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP ++++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNTETLAVLYARYGFTQ 274
>gi|365920203|ref|ZP_09444552.1| DNA-directed DNA polymerase [Cardiobacterium valvarum F0432]
gi|364578420|gb|EHM55625.1| DNA-directed DNA polymerase [Cardiobacterium valvarum F0432]
Length = 900
Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats.
Identities = 125/278 (44%), Positives = 182/278 (65%), Gaps = 11/278 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RAF+ LP + D P GAL+G +KML KLY +++ YI +FDA+GK
Sbjct: 10 VVLVDGSSYLFRAFHGLPPLTTRDGRPTGALHGVVKMLAKLYDDHQPAYIGVVFDAQGKT 69
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP+YKA R MP +L QI +H++++A+G+P++I GVEADDVIGTLA QA+ +
Sbjct: 70 FRHDLYPAYKAHRPPMPDDLRAQIEPLHRLIEALGFPLIIEDGVEADDVIGTLAMQALAR 129
Query: 125 HNLKVIISTNDKDMAQ-LVSNKIALINN--NKIHDRTTIISRFGVS---PEKIVDYFSLI 178
H +V+IS+ DKDM Q LV I L++ N I + +RF V ++++DY +L+
Sbjct: 130 H-YQVVISSGDKDMTQLLVHADITLLDTMKNAITTADDVAARFKVDALRADQVIDYLALV 188
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD +DN+PGV K+GPKTA K L +Y +++N+I+NA+ I G IG NLR + L +++
Sbjct: 189 GDSADNIPGVPKVGPKTAAKWLAEYGNIDNLIDNASKIPGKIGDNLRAGIPTLHLARELA 248
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
TI T L I L LQP+ L L + Y+L
Sbjct: 249 TINTSLPLATTIA----DLALQPRQPDKLAALCDTYEL 282
>gi|365087991|ref|ZP_09327697.1| DNA polymerase I [Acidovorax sp. NO-1]
gi|363417297|gb|EHL24379.1| DNA polymerase I [Acidovorax sp. NO-1]
Length = 932
Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats.
Identities = 131/288 (45%), Positives = 184/288 (63%), Gaps = 11/288 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNI----DNFPVGALYGTIKMLRKLYKNYRATYIACI 57
+ TL+LVDGSS +YRAF+A+PD+R + + GA+ G I M++ L K RA Y AC+
Sbjct: 4 KKTLVLVDGSSYLYRAFHAMPDLRAVPGDSTSPATGAIRGMINMMQALRKEVRADYAACV 63
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDA G FR+ LY YKATR MP +L QI IHQ+V +GW ++ + GVEADDVI TL
Sbjct: 64 FDASGPTFRDALYTEYKATRSPMPDDLRSQIEPIHQVVDLLGWKVVAVPGVEADDVIATL 123
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
A A + ++VI+S+ DKD++QLV+ I +I+ + K D + + FGV P +VDY
Sbjct: 124 ANAAAAQ-GIEVIVSSGDKDLSQLVNEHITIIDTMSGKRRDVAGVTAEFGVPPALMVDYQ 182
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL--NWLPK 233
+L+GD DN+PGV K+GPKTA K L +Y SL+N+I NA+ IKGV G NLR A+ L
Sbjct: 183 ALVGDTVDNVPGVAKVGPKTAAKWLEEYGSLDNLIANADAIKGVAGNNLREAIASGQLAL 242
Query: 234 LKKILTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
++++T+KTDC L I +P + + L D + L+ + KY L
Sbjct: 243 SRQLVTMKTDCALADYIPGLPAFDDITLDAPDNEGLLPFYEKYGFKGL 290
>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
Length = 936
Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats.
Identities = 130/282 (46%), Positives = 184/282 (65%), Gaps = 9/282 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
Q+ L+LVDGSS ++RA++ L + D P GA+ G + M R L K+Y I IFD
Sbjct: 14 QSPLILVDGSSYLFRAYHVPYLQALSTADGQPTGAITGVLNMFRSLKKDYPNGNIIAIFD 73
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
AKGK FRN ++P YKA R MP +L QI IH+++ A+G P+L+I GVEADDVIGTLAK
Sbjct: 74 AKGKTFRNDMFPEYKANRPPMPDDLRTQIAPIHEIITAMGLPLLVIPGVEADDVIGTLAK 133
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
QA + ++ +IST DKDMAQLV+ + LIN + D + +FGV P++I+DY +L
Sbjct: 134 QA-DELGIETVISTGDKDMAQLVTKHVRLINTMTDVEMDVAGVSEKFGVRPDQIIDYLAL 192
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K GPKTAVK L ++ +++ +I NA+ +KG IG+NLR AL LP ++
Sbjct: 193 MGDKVDNIPGVVKCGPKTAVKWLAEHGTMQEVIANADKVKGKIGENLRDALEQLPLSYQL 252
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
TIK D +L + + S +P D L +L+ K++L +L
Sbjct: 253 ATIKCDVELEQTAGELAAS---EP-DVDALAELYQKFELKRL 290
>gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
Length = 933
Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats.
Identities = 132/277 (47%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA QA
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV P++IVD +L+GD
Sbjct: 123 -GLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDEAVIAKFGVRPDQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTA K L +Y+SL+ +I NA+ IKG IG+NLR AL LP ++++TIK
Sbjct: 182 VDNVPGVDKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGENLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNAETLAVLYARYGFTQ 274
>gi|389757324|ref|ZP_10191642.1| DNA polymerase I, partial [Rhodanobacter sp. 115]
gi|388430940|gb|EIL88059.1| DNA polymerase I, partial [Rhodanobacter sp. 115]
Length = 315
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/272 (46%), Positives = 170/272 (62%), Gaps = 8/272 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA G
Sbjct: 4 LTLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKA-RPDYVAFVSDASGPT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN +Y YKA R MP +L Q+ + +V A+G+PIL + GVEADDVIGTLA QA
Sbjct: 63 FRNDMYDQYKANRPPMPDDLRAQVEPMLAIVGALGFPILRVSGVEADDVIGTLAVQA-HA 121
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++V IST DKDMAQLV I L+N + D + ++FGV P +I+D+ +L GD
Sbjct: 122 QGIEVEISTGDKDMAQLVRPGITLVNTMTSTTMDDAGVEAKFGVPPNRIIDFLTLTGDSI 181
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTA K L +Y+SL+ +I +A+ I G IG+ LR AL LP ++++TIKT
Sbjct: 182 DNVPGVHKCGPKTAAKWLAEYDSLDGVIAHADKIGGKIGEYLREALPNLPLSRELVTIKT 241
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
D L P L L+ D L +L+ +Y
Sbjct: 242 DVPLDAG----PTELALREADTAALRELYTRY 269
>gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118]
gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118]
Length = 933
Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats.
Identities = 132/277 (47%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L+V IST DKD AQLV I L+N +++ +I++FGV P++IVD +L+GD
Sbjct: 123 -GLQVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP ++++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
Length = 934
Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats.
Identities = 133/277 (48%), Positives = 174/277 (62%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV PE+IVD +L+GD
Sbjct: 123 -GLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPEQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP + ++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRTLVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|418517767|ref|ZP_13083925.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|410705480|gb|EKQ63952.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 934
Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats.
Identities = 133/277 (48%), Positives = 174/277 (62%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV PE+IVD +L+GD
Sbjct: 123 -GLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPEQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP + ++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRTLVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|418522210|ref|ZP_13088248.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410701574|gb|EKQ60095.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 934
Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats.
Identities = 133/277 (48%), Positives = 174/277 (62%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV PE+IVD +L+GD
Sbjct: 123 -GLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPEQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP + ++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRTLVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|381172148|ref|ZP_09881282.1| DNA polymerase I [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|380687415|emb|CCG37769.1| DNA polymerase I [Xanthomonas citri pv. mangiferaeindicae LMG 941]
Length = 934
Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats.
Identities = 133/277 (48%), Positives = 174/277 (62%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV PE+IVD +L+GD
Sbjct: 123 -GLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPEQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP + ++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRTLVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|390990081|ref|ZP_10260372.1| DNA polymerase I [Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|372555183|emb|CCF67347.1| DNA polymerase I [Xanthomonas axonopodis pv. punicae str. LMG 859]
Length = 934
Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats.
Identities = 133/277 (48%), Positives = 174/277 (62%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV PE+IVD +L+GD
Sbjct: 123 -GLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPEQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP + ++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRTLVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|389772408|ref|ZP_10192124.1| DNA polymerase I [Rhodanobacter sp. 115]
gi|388429614|gb|EIL86918.1| DNA polymerase I [Rhodanobacter sp. 115]
Length = 761
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/272 (46%), Positives = 171/272 (62%), Gaps = 8/272 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA G
Sbjct: 4 LTLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKA-RPDYVAFVSDASGPT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN +Y YKA R MP +L Q+ + +V A+G+PIL + GVEADDVIGTLA QA +
Sbjct: 63 FRNDMYDQYKANRPPMPDDLRAQVEPMLAIVGALGFPILRVSGVEADDVIGTLAVQAHAQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++V IST DKDMAQLV I L+N + D + ++FGV P +I+D+ +L GD
Sbjct: 123 -GIEVEISTGDKDMAQLVRPGITLVNTMTSTTMDDAGVEAKFGVPPNRIIDFLTLTGDSI 181
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTA K L +Y+SL+ +I +A+ I G IG+ LR AL LP ++++TIKT
Sbjct: 182 DNVPGVHKCGPKTAAKWLAEYDSLDGVIAHADKIGGKIGEYLREALPNLPLSRELVTIKT 241
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
D L P L L+ D L +L+ +Y
Sbjct: 242 DVPLDAG----PTELALREADTAALRELYTRY 269
>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
Length = 932
Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats.
Identities = 128/286 (44%), Positives = 179/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N LLLVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLLLVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L +QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + L + P D+K L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELDVTC----DELTVSPPDDKQLHQLFSRYEFKR 286
>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
FSC147]
gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 897
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 121/277 (43%), Positives = 183/277 (66%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP + N P GA+ G I ML+KL Y Y+A +FDAKGK+
Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNNQGEPTGAIIGVINMLKKLPIMYDTEYVAVVFDAKGKS 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA RK + L +QI +HQ+++ +G+ ++I GVEADDVIGTLA Q + K
Sbjct: 64 FRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLA-QKLQK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ ++IIST DKDMAQLV++ I L ++ N D ++ ++ +SP +++DY +L+GD S
Sbjct: 123 QDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTAVK L Y +++ II N IKG +G+NLR ++ L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKGKVGENLRNNIDLLKLSYQLATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + E L + D+ L++ + +Y+ L
Sbjct: 243 DLELDLTV----EDLKCKAADKAYLIEAYTRYEFKSL 275
>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM10+]
gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
gi|384120608|ref|YP_005503228.1| DNA polymerase I [Yersinia pestis D106004]
gi|384138000|ref|YP_005520702.1| DNA polymerase I [Yersinia pestis A1122]
gi|384416569|ref|YP_005625931.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|420544025|ref|ZP_15042305.1| DNA polymerase I [Yersinia pestis PY-01]
gi|420549705|ref|ZP_15047375.1| DNA polymerase I [Yersinia pestis PY-02]
gi|420560395|ref|ZP_15056779.1| DNA polymerase I [Yersinia pestis PY-04]
gi|420565839|ref|ZP_15061678.1| DNA polymerase I [Yersinia pestis PY-05]
gi|420571301|ref|ZP_15066649.1| DNA polymerase I [Yersinia pestis PY-06]
gi|420576581|ref|ZP_15071425.1| DNA polymerase I [Yersinia pestis PY-07]
gi|420582034|ref|ZP_15076380.1| DNA polymerase I [Yersinia pestis PY-08]
gi|420592458|ref|ZP_15085783.1| DNA polymerase I [Yersinia pestis PY-09]
gi|420597790|ref|ZP_15090577.1| DNA polymerase I [Yersinia pestis PY-10]
gi|420598026|ref|ZP_15090785.1| DNA polymerase I [Yersinia pestis PY-11]
gi|420603500|ref|ZP_15095645.1| DNA polymerase I [Yersinia pestis PY-12]
gi|420608858|ref|ZP_15100507.1| DNA polymerase I [Yersinia pestis PY-13]
gi|420614435|ref|ZP_15105485.1| DNA polymerase I family protein [Yersinia pestis PY-14]
gi|420619720|ref|ZP_15110092.1| DNA polymerase I [Yersinia pestis PY-15]
gi|420624853|ref|ZP_15114736.1| DNA polymerase I [Yersinia pestis PY-16]
gi|420634939|ref|ZP_15123833.1| DNA polymerase I [Yersinia pestis PY-19]
gi|420635129|ref|ZP_15123996.1| DNA polymerase I [Yersinia pestis PY-25]
gi|420640746|ref|ZP_15129066.1| DNA polymerase I [Yersinia pestis PY-29]
gi|420650972|ref|ZP_15138348.1| DNA polymerase I [Yersinia pestis PY-32]
gi|420651609|ref|ZP_15138902.1| DNA polymerase I [Yersinia pestis PY-34]
gi|420656953|ref|ZP_15143729.1| DNA polymerase I [Yersinia pestis PY-36]
gi|420662127|ref|ZP_15148347.1| DNA polymerase I [Yersinia pestis PY-42]
gi|420672410|ref|ZP_15157672.1| DNA polymerase I family protein [Yersinia pestis PY-45]
gi|420677790|ref|ZP_15162571.1| DNA polymerase I [Yersinia pestis PY-46]
gi|420678137|ref|ZP_15162874.1| DNA polymerase I [Yersinia pestis PY-47]
gi|420683438|ref|ZP_15167639.1| DNA polymerase I [Yersinia pestis PY-48]
gi|420693865|ref|ZP_15176847.1| DNA polymerase I [Yersinia pestis PY-52]
gi|420694173|ref|ZP_15177119.1| DNA polymerase I [Yersinia pestis PY-53]
gi|420705727|ref|ZP_15186696.1| DNA polymerase I family protein [Yersinia pestis PY-54]
gi|420710681|ref|ZP_15191215.1| DNA polymerase I [Yersinia pestis PY-55]
gi|420716203|ref|ZP_15196106.1| DNA polymerase I [Yersinia pestis PY-56]
gi|420716471|ref|ZP_15196341.1| DNA polymerase I [Yersinia pestis PY-58]
gi|420722124|ref|ZP_15201148.1| DNA polymerase I [Yersinia pestis PY-59]
gi|420727693|ref|ZP_15206091.1| DNA polymerase I [Yersinia pestis PY-60]
gi|420737860|ref|ZP_15215275.1| DNA polymerase I [Yersinia pestis PY-61]
gi|420738255|ref|ZP_15215618.1| DNA polymerase I [Yersinia pestis PY-63]
gi|420743356|ref|ZP_15220211.1| DNA polymerase I [Yersinia pestis PY-64]
gi|420749354|ref|ZP_15225224.1| DNA polymerase I [Yersinia pestis PY-65]
gi|420760457|ref|ZP_15234575.1| DNA polymerase I [Yersinia pestis PY-66]
gi|420760611|ref|ZP_15234694.1| DNA polymerase I [Yersinia pestis PY-71]
gi|420765633|ref|ZP_15239240.1| DNA polymerase I [Yersinia pestis PY-72]
gi|420770826|ref|ZP_15243888.1| DNA polymerase I [Yersinia pestis PY-76]
gi|420776041|ref|ZP_15248609.1| DNA polymerase I [Yersinia pestis PY-88]
gi|420781442|ref|ZP_15253347.1| DNA polymerase I [Yersinia pestis PY-89]
gi|420786967|ref|ZP_15258170.1| DNA polymerase I family protein [Yersinia pestis PY-90]
gi|420792449|ref|ZP_15263117.1| DNA polymerase I [Yersinia pestis PY-91]
gi|420802870|ref|ZP_15272489.1| DNA polymerase I [Yersinia pestis PY-92]
gi|420802973|ref|ZP_15272574.1| DNA polymerase I [Yersinia pestis PY-93]
gi|420808238|ref|ZP_15277351.1| DNA polymerase I family protein [Yersinia pestis PY-94]
gi|420813715|ref|ZP_15282246.1| DNA polymerase I [Yersinia pestis PY-95]
gi|420819047|ref|ZP_15287103.1| DNA polymerase I [Yersinia pestis PY-96]
gi|420829404|ref|ZP_15296402.1| DNA polymerase I [Yersinia pestis PY-98]
gi|420829822|ref|ZP_15296761.1| DNA polymerase I [Yersinia pestis PY-99]
gi|420834867|ref|ZP_15301310.1| DNA polymerase I [Yersinia pestis PY-100]
gi|420845246|ref|ZP_15310725.1| DNA polymerase I [Yersinia pestis PY-101]
gi|420845622|ref|ZP_15311051.1| DNA polymerase I [Yersinia pestis PY-102]
gi|420850769|ref|ZP_15315681.1| DNA polymerase I [Yersinia pestis PY-103]
gi|420856406|ref|ZP_15320392.1| DNA polymerase I [Yersinia pestis PY-113]
gi|421761441|ref|ZP_16198241.1| DNA polymerase I [Yersinia pestis INS]
gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM10+]
gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342853129|gb|AEL71682.1| DNA polymerase I [Yersinia pestis A1122]
gi|391434738|gb|EIQ95899.1| DNA polymerase I [Yersinia pestis PY-02]
gi|391434977|gb|EIQ96095.1| DNA polymerase I [Yersinia pestis PY-01]
gi|391450511|gb|EIR10140.1| DNA polymerase I [Yersinia pestis PY-05]
gi|391451018|gb|EIR10563.1| DNA polymerase I [Yersinia pestis PY-04]
gi|391452375|gb|EIR11784.1| DNA polymerase I [Yersinia pestis PY-06]
gi|391453481|gb|EIR12793.1| DNA polymerase I [Yersinia pestis PY-09]
gi|391466715|gb|EIR24764.1| DNA polymerase I [Yersinia pestis PY-07]
gi|391467365|gb|EIR25351.1| DNA polymerase I [Yersinia pestis PY-10]
gi|391467553|gb|EIR25523.1| DNA polymerase I [Yersinia pestis PY-08]
gi|391484596|gb|EIR40834.1| DNA polymerase I [Yersinia pestis PY-12]
gi|391484982|gb|EIR41178.1| DNA polymerase I [Yersinia pestis PY-11]
gi|391498899|gb|EIR53604.1| DNA polymerase I [Yersinia pestis PY-13]
gi|391499180|gb|EIR53831.1| DNA polymerase I [Yersinia pestis PY-15]
gi|391500256|gb|EIR54779.1| DNA polymerase I [Yersinia pestis PY-19]
gi|391502336|gb|EIR56646.1| DNA polymerase I family protein [Yersinia pestis PY-14]
gi|391513900|gb|EIR67062.1| DNA polymerase I [Yersinia pestis PY-16]
gi|391516538|gb|EIR69427.1| DNA polymerase I [Yersinia pestis PY-25]
gi|391517582|gb|EIR70370.1| DNA polymerase I [Yersinia pestis PY-32]
gi|391529396|gb|EIR81090.1| DNA polymerase I [Yersinia pestis PY-29]
gi|391532088|gb|EIR83519.1| DNA polymerase I [Yersinia pestis PY-34]
gi|391535002|gb|EIR86121.1| DNA polymerase I family protein [Yersinia pestis PY-45]
gi|391546567|gb|EIR96543.1| DNA polymerase I [Yersinia pestis PY-36]
gi|391548382|gb|EIR98190.1| DNA polymerase I [Yersinia pestis PY-46]
gi|391548809|gb|EIR98568.1| DNA polymerase I [Yersinia pestis PY-42]
gi|391563323|gb|EIS11645.1| DNA polymerase I [Yersinia pestis PY-52]
gi|391563540|gb|EIS11846.1| DNA polymerase I [Yersinia pestis PY-47]
gi|391565484|gb|EIS13592.1| DNA polymerase I [Yersinia pestis PY-48]
gi|391566715|gb|EIS14674.1| DNA polymerase I family protein [Yersinia pestis PY-54]
gi|391578932|gb|EIS25125.1| DNA polymerase I [Yersinia pestis PY-55]
gi|391579094|gb|EIS25267.1| DNA polymerase I [Yersinia pestis PY-53]
gi|391580149|gb|EIS26179.1| DNA polymerase I [Yersinia pestis PY-56]
gi|391606774|gb|EIS49467.1| DNA polymerase I [Yersinia pestis PY-60]
gi|391608253|gb|EIS50765.1| DNA polymerase I [Yersinia pestis PY-61]
gi|391608547|gb|EIS51023.1| DNA polymerase I [Yersinia pestis PY-58]
gi|391609178|gb|EIS51603.1| DNA polymerase I [Yersinia pestis PY-59]
gi|391622214|gb|EIS63169.1| DNA polymerase I [Yersinia pestis PY-63]
gi|391623734|gb|EIS64470.1| DNA polymerase I [Yersinia pestis PY-66]
gi|391631264|gb|EIS70914.1| DNA polymerase I [Yersinia pestis PY-64]
gi|391632922|gb|EIS72400.1| DNA polymerase I [Yersinia pestis PY-65]
gi|391643976|gb|EIS82075.1| DNA polymerase I [Yersinia pestis PY-71]
gi|391647023|gb|EIS84706.1| DNA polymerase I [Yersinia pestis PY-72]
gi|391656567|gb|EIS93188.1| DNA polymerase I [Yersinia pestis PY-76]
gi|391664114|gb|EIS99880.1| DNA polymerase I [Yersinia pestis PY-88]
gi|391669288|gb|EIT04428.1| DNA polymerase I [Yersinia pestis PY-89]
gi|391670250|gb|EIT05309.1| DNA polymerase I family protein [Yersinia pestis PY-90]
gi|391673402|gb|EIT08128.1| DNA polymerase I [Yersinia pestis PY-91]
gi|391673777|gb|EIT08456.1| DNA polymerase I [Yersinia pestis PY-92]
gi|391687906|gb|EIT21176.1| DNA polymerase I [Yersinia pestis PY-93]
gi|391690645|gb|EIT23657.1| DNA polymerase I family protein [Yersinia pestis PY-94]
gi|391691607|gb|EIT24519.1| DNA polymerase I [Yersinia pestis PY-98]
gi|391702763|gb|EIT34613.1| DNA polymerase I [Yersinia pestis PY-95]
gi|391705298|gb|EIT36863.1| DNA polymerase I [Yersinia pestis PY-96]
gi|391706171|gb|EIT37631.1| DNA polymerase I [Yersinia pestis PY-101]
gi|391717328|gb|EIT47706.1| DNA polymerase I [Yersinia pestis PY-99]
gi|391721177|gb|EIT51138.1| DNA polymerase I [Yersinia pestis PY-100]
gi|391732011|gb|EIT60637.1| DNA polymerase I [Yersinia pestis PY-102]
gi|391735443|gb|EIT63583.1| DNA polymerase I [Yersinia pestis PY-103]
gi|391737910|gb|EIT65756.1| DNA polymerase I [Yersinia pestis PY-113]
gi|411177763|gb|EKS47775.1| DNA polymerase I [Yersinia pestis INS]
Length = 932
Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats.
Identities = 128/286 (44%), Positives = 179/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N LLLVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLLLVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L +QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + L + P D+K L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELDVTC----DELTVSPPDDKQLHQLFSRYEFKR 286
>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
Length = 926
Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats.
Identities = 132/277 (47%), Positives = 178/277 (64%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA QA +
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAASD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV P +IVD +L+GD
Sbjct: 123 -GLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPNQIVDLLALMGDA 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG+NLR AL LP ++++TIK
Sbjct: 182 IDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGENLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y ++
Sbjct: 242 TDVVLA----SGPRALDLRDPNAEALAVLYARYGFSQ 274
>gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 933
Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats.
Identities = 132/277 (47%), Positives = 175/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA QA
Sbjct: 63 FRDALYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV P++IVD +L+GD
Sbjct: 123 -GLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP ++++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
D L S P +L L+ + + L L+ +Y +
Sbjct: 242 IDVTLA----SGPRALDLREPNTETLAVLYARYGFTQ 274
>gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 933
Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats.
Identities = 131/277 (47%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q
Sbjct: 63 FRDDLYADYKANRPPMPEDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L+V IST DKD AQLV I L+N +++ +I++FGV P++IVD +L+GD
Sbjct: 123 -GLQVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP ++++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|346726843|ref|YP_004853512.1| DNA polymerase I [Xanthomonas axonopodis pv. citrumelo F1]
gi|346651590|gb|AEO44214.1| DNA polymerase I [Xanthomonas axonopodis pv. citrumelo F1]
Length = 933
Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats.
Identities = 132/277 (47%), Positives = 175/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV P++IVD +L+GD
Sbjct: 123 -GLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP ++++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 934
Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats.
Identities = 132/277 (47%), Positives = 174/277 (62%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ ++++FGV PE+IVD +L+GD
Sbjct: 123 -GLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVVAKFGVRPEQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP + ++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRALVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 934
Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats.
Identities = 132/277 (47%), Positives = 174/277 (62%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ ++++FGV PE+IVD +L+GD
Sbjct: 123 -GLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVVAKFGVRPEQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP + ++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRALVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|253987782|ref|YP_003039138.1| dna polymerase I polA [Photorhabdus asymbiotica]
gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
ATCC 43949]
gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
Length = 929
Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats.
Identities = 128/285 (44%), Positives = 181/285 (63%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYHAFPPLTNSTGEPTGAMYGVLNMLRSLVMQYKPSHVAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YK+ R MP +L QI +HQ+V+A+G P+L++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDELFAEYKSHRPPMPDDLRAQIEPLHQLVEAMGLPLLVVPGVEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
K V+IST DKDMAQLV+ I LIN NN I ++ ++GV PE I+D+ +L+GD
Sbjct: 126 EKEGRSVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVVEKYGVPPELIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
SDN+PGV +G KTA+ LL +++I N + I G+ + + N L K
Sbjct: 186 SSDNIPGVPGVGEKTALGLLQGIGGIDDIFANLDKIAGLSFRGAKTLANKLEPHKDVAYL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L K V++ + +P EK L QLF++Y+ +
Sbjct: 246 SYKLATIKTDVELDKTCVALS---VAKPDTEK-LHQLFSRYEFKR 286
>gi|389872699|ref|YP_006380118.1| DNA polymerase I [Advenella kashmirensis WT001]
gi|388537948|gb|AFK63136.1| DNA polymerase I [Advenella kashmirensis WT001]
Length = 865
Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats.
Identities = 112/236 (47%), Positives = 166/236 (70%), Gaps = 4/236 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
M+RK +Y+A Y ACIFDAKGK FR+ LYP YK R MP +L +Q IH+ ++A+GW
Sbjct: 1 MMRKCIDDYKADYAACIFDAKGKTFRDDLYPEYKGDRPPMPDDLAVQTGPIHEAIRAMGW 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRT 158
P++ GVEADDVI TLA A + ++ IIST DKD+AQLV++ I+L+N + D
Sbjct: 61 PVIAAPGVEADDVIATLADMA-ARSDIHTIISTGDKDLAQLVNSHISLVNTMTGENLDEA 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
++++FGV PE+IVDY LIGD DN+PGV K+GPKTAVK L++Y+S++N++ NA+NIKG
Sbjct: 120 GVLAKFGVRPERIVDYLMLIGDNVDNVPGVAKVGPKTAVKWLSEYDSIDNLVANADNIKG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
V G+NLR A+ + ++T++ DC+LT+ + + + L+ +P D L ++++Y
Sbjct: 180 VAGQNLRDAIPQFELTRNLITVRRDCELTEFMQGV-QDLLPKPPDVPTLTTIYDRY 234
>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
Length = 932
Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 179/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L +QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + L + P D+K L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELDVTC----DELTVSPPDDKQLHQLFSRYEFKR 286
>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
Length = 932
Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 179/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L +QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + L + P D+K L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELDVTC----DELTVSPPDDKQLHQLFSRYEFKR 286
>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
Length = 932
Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 179/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L +QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + L + P D+K L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELDVTC----DELTVSPPDDKQLHQLFSRYEFKR 286
>gi|383318117|ref|YP_005378959.1| DNA polymerase I [Frateuria aurantia DSM 6220]
gi|379045221|gb|AFC87277.1| DNA polymerase I [Frateuria aurantia DSM 6220]
Length = 948
Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats.
Identities = 129/276 (46%), Positives = 174/276 (63%), Gaps = 8/276 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR R Y+ + DA G
Sbjct: 31 LILIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRSALAA-RPEYLVFVSDASGPT 89
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ YP YKA R MP +L QI + +V A+G PIL I GVEADDVIGTLA QA
Sbjct: 90 FRHQQYPQYKAQRPPMPDDLRAQIQPMLDIVAALGVPILRIAGVEADDVIGTLALQA-HA 148
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
H+++VIIST DKD+AQLV I+L+N D ++++FGV P++I+D+ SL GD S
Sbjct: 149 HDIEVIISTGDKDLAQLVRPGISLVNTMTQTTMDDAAVMAKFGVRPDQIIDFLSLTGDTS 208
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTA K L +Y SL+ +I +A +IKG IG++LR AL L ++++TIKT
Sbjct: 209 DNIPGVPKCGPKTAAKWLAEYQSLDGVIAHAGDIKGKIGESLREALPGLALSRQLVTIKT 268
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
D L + S +L D L L+ +Y +
Sbjct: 269 DVPLD----GVVTSFVLGQPDRDRLHALYTRYDFKQ 300
>gi|384417449|ref|YP_005626809.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353460363|gb|AEQ94642.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 933
Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats.
Identities = 132/277 (47%), Positives = 175/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R YIA + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYIAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R M +L Q+ + +V A+G IL I GVEADDVIGTLA QA
Sbjct: 63 FRDALYADYKANRPSMADDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQAAAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV I L+N +++ +I++FGV P++IVD +L+GD
Sbjct: 123 -GLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG NLR AL LP ++++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVTLA----SGPRALDLREPNTETLAVLYARYGFTQ 274
>gi|422349819|ref|ZP_16430708.1| DNA polymerase I [Sutterella wadsworthensis 2_1_59BFAA]
gi|404658028|gb|EKB30908.1| DNA polymerase I [Sutterella wadsworthensis 2_1_59BFAA]
Length = 947
Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats.
Identities = 117/275 (42%), Positives = 180/275 (65%), Gaps = 5/275 (1%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LL+DGS+ ++RAF+ LPD+R P GA+ G + ML K++ + + IFDA+GKN
Sbjct: 4 ILLIDGSNYLFRAFHGLPDLRTSSGEPTGAVRGFLGMLGKVWALAKPDHAVIIFDAQGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ ++P YK+ R MP +L +QI +H ++K +GWP++ + GVEADDVI T+A++A
Sbjct: 64 FRHEMFPEYKSNRPPMPDDLRVQIEPLHGILKDLGWPVVSVPGVEADDVIATIAEKARAA 123
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+K II+T DKDMAQLV + I LIN N K +DR +I ++GV PE+IVDY SL+GD
Sbjct: 124 -GMKSIIATGDKDMAQLVDDDIVLINTMNVKFYDREGVIEKYGVPPERIVDYLSLMGDKV 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG++K GPKTA K + +Y LE + +A +KG G+ LR L +L +++ TI
Sbjct: 183 DNVPGIEKCGPKTAAKWIAEYGDLEGVKAHAGEVKGKAGEYLRAGLAFLDDARRLTTICR 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLN 277
L + V PE+L+++P D + +++++
Sbjct: 243 TVKLPEGCV--PEALVVKPADPDAVSAFCRRWEMS 275
>gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Pseudoalteromonas tunicata D2]
gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Pseudoalteromonas tunicata D2]
Length = 916
Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats.
Identities = 123/271 (45%), Positives = 176/271 (64%), Gaps = 7/271 (2%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS ++RAF++ P + N GA+YG + ML+ L K + +++ IFDAKG
Sbjct: 7 NPLILVDGSSYLFRAFHSPPHLTNSRGESTGAIYGVVNMLKSLVKQFDPSHMVVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +Y YKA R MP L QI +H +++A+G P++ I+GVEADDVIGT A+ A
Sbjct: 67 KTFRNDMYAEYKANRPPMPDELRGQIAPLHDIIRAMGLPLISIEGVEADDVIGTFARIA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
T+ V+IST DKDMAQLV+ + LIN + + D + +FGV PE I+DY +L+GD
Sbjct: 126 TEQKRNVLISTGDKDMAQLVNEHVTLINTMTDTVLDPAGVTEKFGVPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV GPKTAVK L QY SL +I NA IKG IG+ L+ A+ LP ++ TI
Sbjct: 186 KVDNIPGVDGCGPKTAVKWLQQYGSLSQVIENAAAIKGKIGEKLQAAVPHLPLSFELATI 245
Query: 241 KTDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
K D +++ ++ + L +Q ++ L++L+
Sbjct: 246 KLDVEVSDDL----DQLTIQAPNKDELIKLY 272
>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
Length = 927
Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats.
Identities = 130/277 (46%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q +
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGASD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV + L+N +++ +I++FGV P +IVD +L+GD
Sbjct: 123 -GLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG+NLR AL LP ++++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGENLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVVLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|384425931|ref|YP_005635288.1| DNA polymerase I [Xanthomonas campestris pv. raphani 756C]
gi|341935031|gb|AEL05170.1| DNA polymerase I [Xanthomonas campestris pv. raphani 756C]
Length = 927
Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats.
Identities = 130/277 (46%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q +
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGASD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV + L+N +++ +I++FGV P +IVD +L+GD
Sbjct: 123 -GLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG+NLR AL LP ++++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGENLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVVLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100]
gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris]
Length = 927
Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats.
Identities = 130/277 (46%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G IL I GVEADDVIGTLA Q +
Sbjct: 63 FRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGASD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV + L+N +++ +I++FGV P +IVD +L+GD
Sbjct: 123 -GLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y+SL+ +I NA+ IKG IG+NLR AL LP ++++TIK
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGENLRAALPRLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L S P +L L+ + + L L+ +Y +
Sbjct: 242 TDVVLA----SGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|387886293|ref|YP_006316592.1| DNA polymerase I [Francisella noatunensis subsp. orientalis str.
Toba 04]
gi|386871109|gb|AFJ43116.1| DNA polymerase I [Francisella noatunensis subsp. orientalis str.
Toba 04]
Length = 896
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/277 (43%), Positives = 181/277 (65%), Gaps = 7/277 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RA++ALP++ N P GA+ G I ML+KL Y Y+A +FD KGKN
Sbjct: 4 IVLVDGSSYLFRAYHALPNLTNSQGDPAGAIIGVINMLKKLPAMYDTEYVAVVFDPKGKN 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +YP YKA RK M L +QI +HQ+++ +G+P++I GVEADDVIGTLA+ + K
Sbjct: 64 FRHEMYPEYKANRKVMDDELRVQIQPLHQIIENMGFPLIIKDGVEADDVIGTLARD-LEK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
VIIST DKDMAQLV++ + L ++ N D + ++ + P++I+DY +L+GD S
Sbjct: 123 QGYDVIISTGDKDMAQLVTDSVVLYDSMKNVTTDIAGLFEKYQIRPDQIIDYLALMGDSS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ K+GPKTA+K L +Y + II N + I G +G+NLR + L ++ TIK
Sbjct: 183 DNIPGIPKVGPKTAIKWLQEYQDIGGIIANQDKITGKVGENLRNNIELLKLSYELATIKC 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L +I E L + +++ L ++F +Y+ L
Sbjct: 243 DVELNLSI----EDLRCKNANKEYLYEVFTRYEFKSL 275
>gi|330858981|emb|CBX69340.1| hypothetical protein YEW_IM36920 [Yersinia enterocolitica W22703]
Length = 323
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/289 (44%), Positives = 180/289 (62%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSKGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ +N + I + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTL---TFRGAKTMSAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ E + P DE+ L QLF++Y+ +
Sbjct: 242 VAYLSYKLATIKTDVELD---ITCDELNVSAPDDEQ-LHQLFSRYEFKR 286
>gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44]
gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44]
Length = 937
Score = 234 bits (598), Expect = 3e-59, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 181/286 (63%), Gaps = 11/286 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRA++A+PD+R I P GA+ G + M++ L K+ +A Y C+FD
Sbjct: 6 TLVLVDGSSYLYRAYHAMPDLRAIPGDPASPATGAIRGMVNMMQALRKDVQADYAVCVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ +Y YKATR MP +L QI IH++V+ +GW ++ + GVEADDVI
Sbjct: 66 ASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVQLLGWKVVAVPGVEADDVI-ATLA 124
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
Q ++VI+S+ DKD++QLV+ + +I+ N K D + + FGV P ++DY +L
Sbjct: 125 QTAAAQGIQVIVSSGDKDLSQLVNEHVTIIDTMNGKKRDVAGVTAEFGVPPALMIDYQAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL--NWLPKLK 235
+GD DN+PGV K+GPKTA K L ++ SL+N+I A +IKGV G+NLR A+ L +
Sbjct: 185 VGDTVDNVPGVTKVGPKTAAKWLEEHGSLDNLIARAADIKGVAGQNLRDAIASGQLALSR 244
Query: 236 KILTIKTDCDLTKNIVSIPE--SLILQPKDEKLLMQLFNKYKLNKL 279
+++T+KTDCDL+ I +P+ ++ L D L + KY L
Sbjct: 245 QLVTMKTDCDLSSYISGLPQLDAITLAEPDSAALAPFYEKYGFKGL 290
>gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
Length = 929
Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats.
Identities = 126/285 (44%), Positives = 182/285 (63%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPSHVAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YK+ R MP +L QI +HQMV+A+G P+L++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDELFAEYKSHRPPMPDDLRTQIEPLHQMVEAMGLPLLVVPGVEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
K V+IST DKDMAQLV+ I LIN NN I ++ ++GV PE I+D+ +L+GD
Sbjct: 126 EKEGRAVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVVEKYGVPPELIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
SDN+PGV +G KTA+ LL +++I N + I G+ + + + + + K
Sbjct: 186 SSDNIPGVPGVGEKTALGLLQGIGGMDDIFANLDKIAGLSFRGAKTLADKMVQHKDVAYL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L K V++ + +P EK L QLF++Y+ +
Sbjct: 246 SYQLATIKTDVELDKTCVALS---VKEPDTEK-LHQLFSRYEFKR 286
>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
Length = 957
Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats.
Identities = 132/296 (44%), Positives = 187/296 (63%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLIAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP NL Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDNLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L G
Sbjct: 126 ANDGK-NVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D+SDN+PGVK +G KTA+ LL SL+ I N + + + + R A +PKL+
Sbjct: 185 DVSDNIPGVKGVGGKTALGLLQGIGSLKEIYANLDQVATL---SFRGAKTLVPKLEAEKE 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L E L++QP+ L++LF +Y+ + LN +M+
Sbjct: 242 AADLSYLLATIKTDVELEVT----HEQLVVQPQKRDELVELFGRYEFKRWLNEVMN 293
>gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2]
gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2]
Length = 931
Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 180/286 (62%), Gaps = 11/286 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRA++A+PD+R I P GA+ G + M++ L K+ +A Y C+FD
Sbjct: 6 TLVLVDGSSYLYRAYHAMPDLRAIPGDPASPATGAIRGMVNMMQALRKDVQADYAVCVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ +Y YKATR MP +L QI IH++V+ +GW ++ + GVEADDVI
Sbjct: 66 ASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVQLLGWKVVAVPGVEADDVI-ATLA 124
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
Q ++VI+S+ DKD++QLV + +I+ N K D + + FGV P ++DY +L
Sbjct: 125 QTAAAQGIQVIVSSGDKDLSQLVGEHVTIIDTMNGKKRDVAGVTAEFGVPPALMIDYQAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL--NWLPKLK 235
+GD DN+PGV K+GPKTA K L ++ SL+N+I A +IKGV G+NLR A+ L +
Sbjct: 185 VGDTVDNVPGVTKVGPKTAAKWLEEHGSLDNLIARAADIKGVAGQNLRDAIASGQLALSR 244
Query: 236 KILTIKTDCDLTKNIVSIPE--SLILQPKDEKLLMQLFNKYKLNKL 279
+++T+KTDCDL+ I +P+ ++ L D L + KY L
Sbjct: 245 QLVTMKTDCDLSSYISGLPQLDAITLAEPDSAALAPFYEKYGFKGL 290
>gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1]
gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1]
Length = 937
Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 180/286 (62%), Gaps = 11/286 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRA++A+PD+R I P GA+ G + M++ L K+ +A Y C+FD
Sbjct: 6 TLVLVDGSSYLYRAYHAMPDLRAIPGDPASPATGAIRGMVNMMQALRKDVQADYAVCVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ +Y YKATR MP +L QI IH++V +GW ++ + GVEADDVI
Sbjct: 66 ASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVAMLGWKVVAVPGVEADDVI-ATLA 124
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
Q ++VI+S+ DKD++QLV+ + +I+ N K D + + FGV P ++DY +L
Sbjct: 125 QTAAAQGIQVIVSSGDKDLSQLVNEHVTIIDTMNGKKRDVAGVTAEFGVPPALMIDYQAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL--NWLPKLK 235
+GD DN+PGV K+GPKTA K L ++ +L+N+I NA IKGV G+NLR A+ L +
Sbjct: 185 VGDTVDNVPGVTKVGPKTAAKWLEEFGTLDNLIANAAGIKGVAGQNLRDAIASGQLALSR 244
Query: 236 KILTIKTDCDLTKNIVSIPE--SLILQPKDEKLLMQLFNKYKLNKL 279
+++T+KTDCDL+ I +P+ ++ L D L + KY L
Sbjct: 245 QLVTMKTDCDLSAYIGGLPQLDAVTLAEPDSAALAPFYEKYGFKGL 290
>gi|422021521|ref|ZP_16368033.1| DNA polymerase I [Providencia sneebia DSM 19967]
gi|414099379|gb|EKT61022.1| DNA polymerase I [Providencia sneebia DSM 19967]
Length = 928
Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats.
Identities = 128/288 (44%), Positives = 185/288 (64%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPSHVAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ SYK+ R MP +L QI +H+MV+A+G P+L++ GVEADDVIGTLA+QA
Sbjct: 67 KTFRDELFESYKSHRPPMPDDLREQIEPLHEMVEAMGLPLLVVSGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ + V+IST DKDMAQLV I LIN NN I + ++G+ PE I+D+ +L+GD
Sbjct: 126 SKNGIPVLISTGDKDMAQLVEPNITLINTMNNTILGPQEVEDKYGIPPELIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
SDN+PGV +G KTA+ LL L+ I N+ ++I G+ R + PK++
Sbjct: 186 SSDNIPGVPGVGEKTALALLQGIGGLDKIYNSLDDIAGL---GFRGSKTLAPKMEENREL 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L K S E ++ P +K L QLF++Y+ +
Sbjct: 243 AFLSYQLATIKTDVELDK---SCEELVVADPNVDK-LHQLFSRYEFKR 286
>gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
gi|415995091|ref|ZP_11560316.1| DNA polymerase I [Acidithiobacillus sp. GGI-221]
gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
gi|339835555|gb|EGQ63217.1| DNA polymerase I [Acidithiobacillus sp. GGI-221]
Length = 899
Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats.
Identities = 119/248 (47%), Positives = 164/248 (66%), Gaps = 6/248 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q+ +LVD SS +YRAF+ALPD+R DN P GA+YG MLR+L K + + I IFDA
Sbjct: 3 QDPRILVDASSFLYRAFHALPDLRAPDNLPTGAIYGVANMLRRLLKEHPSDEIIVIFDAP 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ LYP YKA R MP L +Q+ L+H ++A G P++I VEADDVIGTLA++A
Sbjct: 63 GGTFRDRLYPEYKAHRPAMPEELRVQVPLLHDWIRATGLPLVIEPDVEADDVIGTLAREA 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLIG 179
+V+I T DKDMAQLV++++ LI+ K D + RFGV PE+I D +LIG
Sbjct: 123 APDQ--QVLIVTGDKDMAQLVNSRVRLIDTMKGIETDAAGVEERFGVPPERIADLLALIG 180
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV +GPKTA + L QY L+ ++ +A +I G +G+ LR + ++LP + + T
Sbjct: 181 DKVDNIPGVPGVGPKTAARWLTQYGDLDGVLAHAGDIGGKVGEALRASAHYLPLSRDLAT 240
Query: 240 IKTDCDLT 247
I+ CDLT
Sbjct: 241 IR--CDLT 246
>gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
Length = 958
Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats.
Identities = 125/256 (48%), Positives = 170/256 (66%), Gaps = 3/256 (1%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TLLLVDGSS +YRA++A+ + D P GALYG + MLR+L +Y Y A +FDAKGK
Sbjct: 34 TLLLVDGSSYLYRAYHAMAQLSAPDGAPTGALYGVLNMLRRLRADYVHDYCAVVFDAKGK 93
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFR+ ++P YKATR MP +L Q + +V+ +GWP+L+I VEADDVIGTLA A
Sbjct: 94 NFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGTLAAMA-G 152
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V++ST DKDMAQLV+ ++ L+N + + D + +FGV P++I DY +L+GD
Sbjct: 153 EAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALMGDK 212
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTAVK L Y SL ++ +A IKG +G+NL+ AL L ++TIK
Sbjct: 213 VDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKGKVGENLQAALPQLLLSYDLVTIK 272
Query: 242 TDCDLTKNIVSIPESL 257
TD DL + ESL
Sbjct: 273 TDVDLHTELSDGLESL 288
>gi|406943258|gb|EKD75303.1| hypothetical protein ACD_44C00179G0006, partial [uncultured
bacterium]
Length = 672
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 121/272 (44%), Positives = 180/272 (66%), Gaps = 7/272 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GA+YG + M++KL +Y Y+A IFDAKGK
Sbjct: 7 LILIDGSSYLYRAFHALPPLVNSKGEPSGAIYGVMNMIKKLLNDYSPQYVAVIFDAKGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L+ Q+ + ++++A G P+L I+ VEADDVIGTL A+ K
Sbjct: 67 FRDDLYEDYKAHRDAMPDDLVTQVEPLKEIIQAWGLPLLTIENVEADDVIGTLTASALKK 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+V+IST DKDM QLV+ +++LIN N + D + +FG+ PE ++DY SL+GD S
Sbjct: 127 -KWQVLISTGDKDMTQLVNPRVSLINTMTNTLLDSKGVQEKFGLPPECMIDYLSLVGDSS 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ +GPKTA+K L +Y+S++N++ +A+ I G +G+ LR + + K ++TIK
Sbjct: 186 DNIPGIPGVGPKTAIKWLLEYDSVKNLLKHADKIPGKVGERLRENKDKIDLWKTLVTIKQ 245
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
D L I + L + +D L++LF Y
Sbjct: 246 DVPLKIKI----DDLTQKDQDIPKLIKLFKHY 273
>gi|410610880|ref|ZP_11321985.1| DNA polymerase I [Glaciecola psychrophila 170]
gi|410169591|dbj|GAC35874.1| DNA polymerase I [Glaciecola psychrophila 170]
Length = 916
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 184/282 (65%), Gaps = 11/282 (3%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNF---PVGALYGTIKMLRKLYKNYRATYIACIFD 59
N L+LVDGSS ++RA++ +P ++ + P GA+ G + M++ L K+Y I +FD
Sbjct: 10 NPLVLVDGSSYLFRAYH-VPYLQALSTSYGQPTGAITGVLNMIKSLQKDYPDGNIVVVFD 68
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
AKGK FRN +Y YKA R MP +L QI +H ++ A+G P+L+I GVEADDVIGTLA
Sbjct: 69 AKGKTFRNEMYAEYKANRPPMPDDLRTQIAPLHDIIGAMGLPLLVIDGVEADDVIGTLAN 128
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
QA + ++ IIST DKDMAQLV+ + LIN N D ++ +F V P++I+DY +L
Sbjct: 129 QA-SNLGMETIISTGDKDMAQLVTAHVRLINTMTNVEMDEAGVLEKFAVRPDQIIDYLAL 187
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PGV K GPKTA K L ++ +LE ++ A+++KG +G++LR AL+ LP ++
Sbjct: 188 MGDKVDNIPGVDKCGPKTAAKWLAEHGTLEQVMAKASSVKGKVGEHLRNALSHLPLSYEL 247
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
TIK D DL +N+ I S I D + L+ L +++L +L
Sbjct: 248 ATIKLDVDLPENVQDIKPSEI----DYEKLITLSTQFELKRL 285
>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
Length = 932
Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats.
Identities = 126/286 (44%), Positives = 179/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHSVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + L + P D++ L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELDVTC----DELTVSPPDDEQLHQLFSRYEFKR 286
>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
Length = 932
Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats.
Identities = 126/286 (44%), Positives = 179/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHSVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + L + P D++ L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELDVTC----DELTVSPPDDEQLHQLFSRYEFKR 286
>gi|385330034|ref|YP_005883985.1| LOW QUALITY PROTEIN: DNA polymerase I [Marinobacter adhaerens HP15]
gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [Marinobacter adhaerens HP15]
Length = 868
Score = 233 bits (593), Expect = 8e-59, Method: Composition-based stats.
Identities = 117/240 (48%), Positives = 167/240 (69%), Gaps = 7/240 (2%)
Query: 39 IKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAI 98
I MLR+L +++ + + +FDAKGK FR+ LY YKA R MP +L QI IH++VKA+
Sbjct: 2 ISMLRRLEQDFPGSKMVVVFDAKGKTFRHDLYEEYKANRPPMPEDLACQIEPIHEIVKAM 61
Query: 99 GWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHD 156
G P+L + GVEADDVIGTLA +A +K + V++ST DKDMAQLVS+ + LIN D
Sbjct: 62 GLPLLTVTGVEADDVIGTLANEATSK-GIDVVVSTGDKDMAQLVSDHVTLINTMTETRMD 120
Query: 157 RTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
R ++ +FGV+PE+IVDY +L+GD DN+PGV K GPKTAVK L Y++L+N+I +A+ I
Sbjct: 121 RDGVVEKFGVTPEQIVDYLALVGDKVDNIPGVNKCGPKTAVKWLQSYDNLDNVIEHADEI 180
Query: 217 KGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
KG IG+ LR A LP +++ TI+TD +L + E L L+ +D++ L++LF +Y+
Sbjct: 181 KGKIGEYLRDATETLPLSRELATIRTDVELDFGL----EDLKLREQDDQQLLELFREYEF 236
>gi|418530696|ref|ZP_13096619.1| DNA polymerase I [Comamonas testosteroni ATCC 11996]
gi|371452415|gb|EHN65444.1| DNA polymerase I [Comamonas testosteroni ATCC 11996]
Length = 937
Score = 233 bits (593), Expect = 9e-59, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 179/286 (62%), Gaps = 11/286 (3%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFP----VGALYGTIKMLRKLYKNYRATYIACIFD 59
TL+LVDGSS +YRA++A+PD+R I P GA+ G + M++ L K+ +A Y C+FD
Sbjct: 6 TLVLVDGSSYLYRAYHAMPDLRAIPGDPASPATGAIRGMVNMMQALRKDVQADYAVCVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FR+ +Y YKATR MP +L QI IH++V+ +GW ++ + GVEADDVI
Sbjct: 66 ASGPTFRDEMYSEYKATRSPMPDDLRSQIEPIHEVVQLLGWKVVAVPGVEADDVI-ATLA 124
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
Q + VI+S+ DKD++QLV + +I+ N K D + + FGV P ++DY +L
Sbjct: 125 QTAAAQGINVIVSSGDKDLSQLVDEHVTIIDTMNGKKRDVAGVTAEFGVPPALMIDYQAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL--NWLPKLK 235
+GD DN+PGV K+GPKTA K L ++ SL+N+I A +IKGV G+NLR A+ L +
Sbjct: 185 VGDTVDNVPGVTKVGPKTAAKWLEEHGSLDNLIARAADIKGVAGQNLRDAIASGQLALSR 244
Query: 236 KILTIKTDCDLTKNIVSIPE--SLILQPKDEKLLMQLFNKYKLNKL 279
+++T+KTDCDL+ I +P+ ++ L D L + KY L
Sbjct: 245 QLVTMKTDCDLSAYIGGLPQLDAITLAEPDSAALAPFYEKYGFKGL 290
>gi|381157945|ref|ZP_09867178.1| DNA polymerase I [Thiorhodovibrio sp. 970]
gi|380879303|gb|EIC21394.1| DNA polymerase I [Thiorhodovibrio sp. 970]
Length = 905
Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats.
Identities = 116/244 (47%), Positives = 168/244 (68%), Gaps = 3/244 (1%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+D S ++RA++ALP + N P GAL G + M+R L + Y+ YI +FDA G
Sbjct: 7 LVLLDASGYLFRAYHALPKLSNSRGEPTGALVGVLNMIRSLCERYQPRYIGVVFDAPGPT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN L+ YKA R +MP +L QI+ + ++V+A+G P+LII VEADDV+GTLA +A
Sbjct: 67 FRNALFADYKANRPEMPADLREQIDPLREIVRALGLPLLIIPEVEADDVLGTLATRA-EA 125
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
L+ +IST DKD+AQLV+++I LIN ++ + D + +FGV PE+IVDY SL+GD
Sbjct: 126 AGLRTLISTGDKDLAQLVTDRIHLINTMSDSLLDPDGVREKFGVPPERIVDYLSLMGDSV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTAVK L +Y L+ ++ +A+ I G +G+NLR +L+ LP +++ TIK
Sbjct: 186 DNIPGVPKCGPKTAVKWLGEYGDLDGVMAHADKIGGKVGENLRESLSQLPLARQLTTIKR 245
Query: 243 DCDL 246
D +L
Sbjct: 246 DLEL 249
>gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
11859]
gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
11859]
Length = 950
Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats.
Identities = 121/272 (44%), Positives = 176/272 (64%), Gaps = 6/272 (2%)
Query: 9 DGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNI 68
DGS+ I+RA++ALP + P A+ G + MLR L K+ Y+AC+ D KGK FR+
Sbjct: 23 DGSNFIFRAYHALPPLSTSTGTPTNAIRGFLSMLRVLMKDVPTDYVACVVDPKGKTFRSD 82
Query: 69 LYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLK 128
+YP YKA R MP +L +QI LI + V+ G P L I G+EADD IGTL K+AV +
Sbjct: 83 IYPDYKANRPPMPEDLSVQIPLIFEGVQKEGIPFLQIPGIEADDTIGTLTKKAVAE-GFN 141
Query: 129 VIISTNDKDMAQLVSNKIALIN----NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDN 184
V+I+T DKD AQLV++ + L+N +N + + +FGV PEKI+D+ +L+GD DN
Sbjct: 142 VVIATGDKDFAQLVNDNVLLVNTMGKDNSWLNSEGVEKKFGVPPEKIIDFLALMGDKIDN 201
Query: 185 LPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDC 244
+PGV K G KTA K + ++ S++ +I NA +KG IG+NLR AL +LP ++++TIKTD
Sbjct: 202 VPGVPKCGEKTAAKWITEFGSVDGVIENAEKVKGKIGENLRSALGFLPIARQLVTIKTDA 261
Query: 245 DLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
DL+ + S+ ESL L+ + L+ +NK +
Sbjct: 262 DLSAEVPSL-ESLKLKTPNRTELLDYYNKLEF 292
>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
Length = 954
Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats.
Identities = 132/296 (44%), Positives = 185/296 (62%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKQGEPTGAMYGVLNMLKSLIAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP L QI +H ++KA+G P+L I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLLSIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L+G
Sbjct: 126 -SQAGKHVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYLALLG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL S++ I N + + + + R A + PKL+
Sbjct: 185 DSSDNIPGVKGVGEKTAIALLQGIGSMQAIYANLDKVAEL---SFRGAKTFAPKLEAEKE 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD L + LI QP+ L++LF +Y+ + LN +M+
Sbjct: 242 TADLSYLLATIKTDVALDVTY----DQLITQPQQRDQLVELFGRYEFKRWLNEVMN 293
>gi|422015986|ref|ZP_16362576.1| DNA polymerase I [Providencia burhodogranariea DSM 19968]
gi|414095433|gb|EKT57095.1| DNA polymerase I [Providencia burhodogranariea DSM 19968]
Length = 930
Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats.
Identities = 128/289 (44%), Positives = 181/289 (62%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ SYK+ R MP +L QI +H+MV+A+G P+L++ GVEADDVIGTLA+QA
Sbjct: 66 GKTFRDELFESYKSHRPPMPDDLREQIAPLHEMVEAMGLPLLVVSGVEADDVIGTLARQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 SQK-GIPVLISTGDKDMAQLVEPNITLINTMNNTILGPQEVEEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA+ LL SLE I ++ ++I + R + PK+
Sbjct: 185 DSSDNIPGVPGVGEKTALALLQGIGSLEKIYDSLDDIAPL---GFRGSKTLAPKMAENRE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L K+ E L + D L QLF++Y+ +
Sbjct: 242 LAFLSYQLATIKTDVELDKSC----EQLAVSELDTDKLHQLFSRYEFKR 286
>gi|335423868|ref|ZP_08552886.1| DNA polymerase I [Salinisphaera shabanensis E1L3A]
gi|334890619|gb|EGM28881.1| DNA polymerase I [Salinisphaera shabanensis E1L3A]
Length = 911
Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats.
Identities = 125/279 (44%), Positives = 172/279 (61%), Gaps = 14/279 (5%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRA++ LP + N P GA+YG MLRK + Y A I +FD +G
Sbjct: 21 LILIDGSSWLYRAYHVLPPLTNAAGEPTGAIYGMTNMLRKFLREYEADRIVVVFDPRGPT 80
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN L+ YKA R +P L Q I +V A+G P+L + GVEADDVIGTLA T+
Sbjct: 81 FRNDLFADYKANRPPVPEELSAQFAGIRDVVTALGLPLLQVDGVEADDVIGTLA----TR 136
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTTIISR----FGVSPEKIVDYFSLIGD 180
+V+I T DKDMAQLV+ ++ L++ + DR T ++R FGV PE I DY +L+GD
Sbjct: 137 DAGEVLIVTGDKDMAQLVNERVNLLDT--MQDRRTDVARVHEKFGVGPELITDYLALVGD 194
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
SDN+PGV K+GPKTA K L QY+ L+ +I +A I G + NLR AL+ LP K + TI
Sbjct: 195 SSDNIPGVAKVGPKTAAKWLLQYDGLDGVIAHAGEIGGKVADNLRAALDDLPLYKDLATI 254
Query: 241 KTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ D DL S+ E+L + D + L L+ Y+ ++
Sbjct: 255 RCDLDLG----SVGEALTRREADIRALSDLYRGYEFHQF 289
>gi|389775724|ref|ZP_10193589.1| DNA polymerase I [Rhodanobacter spathiphylli B39]
gi|388436965|gb|EIL93791.1| DNA polymerase I [Rhodanobacter spathiphylli B39]
Length = 920
Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats.
Identities = 125/274 (45%), Positives = 176/274 (64%), Gaps = 8/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K + Y+A + DA G
Sbjct: 4 LILIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKA-KPEYLAFVSDAPGPT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G+PIL + GVEADDVIGTLA QA +
Sbjct: 63 FRDALYDQYKANRPPMPDDLRAQVEPMLAIVGALGFPILRVGGVEADDVIGTLAMQA-HE 121
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++V +ST DKDMAQLV + L+N +N + D ++ +FGV P++I+D+ +L GD
Sbjct: 122 LGIEVEVSTGDKDMAQLVGPHVTLVNTMSNTVMDSNGVMEKFGVRPDQIIDFLALTGDAI 181
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTA K L +Y+SL+ +I NA+ I G IG++LR AL LP ++++TIKT
Sbjct: 182 DNVPGVPKCGPKTAAKWLAEYDSLDGVIANADKIGGKIGESLREALPRLPLSRELVTIKT 241
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L P L + D L +L+ +Y+
Sbjct: 242 DVPLEFG----PTELAQRDADVAQLRELYTRYEF 271
>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
gi|418363147|ref|ZP_12963742.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida 01-B526]
gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
gi|356685587|gb|EHI50229.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida 01-B526]
Length = 918
Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats.
Identities = 130/291 (44%), Positives = 183/291 (62%), Gaps = 22/291 (7%)
Query: 3 NTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
N L+LVDGSS +YRAF+A D+R P GA+ M+R L K Y ++A +FDA
Sbjct: 5 NPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSLRKQYPDCHVAVVFDA 64
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKATR MP +L Q+ IHQM+KA+G+P L+++GVEADDVIGTLA+Q
Sbjct: 65 KGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADDVIGTLARQ 124
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L V+IST DKDMAQLVS+ + LI+ K DR +I +FGV PE I+DY +L+
Sbjct: 125 A-TEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK-- 236
GD DN+PG+ +G KTA+ LL S++ I A N+ V R + + K ++
Sbjct: 184 GDKVDNIPGMTGVGEKTALALLQGIGSIDEI---AANLDKVAALGFRGSKAFADKFREQE 240
Query: 237 --------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ TIKTD +L +++ E L L P D++ L+ ++ +Y+L L
Sbjct: 241 EQVRLSYVLATIKTDVELEQSL----EELQLGPIDKESLLAVYREYELRNL 287
>gi|416892197|ref|ZP_11923627.1| DNA polymerase I [Aggregatibacter aphrophilus ATCC 33389]
gi|347814961|gb|EGY31605.1| DNA polymerase I [Aggregatibacter aphrophilus ATCC 33389]
Length = 458
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/285 (43%), Positives = 180/285 (63%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 51 NPLVLVDGSSYLYRAFHAFPPLTNSNGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 110
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H MV+A+G P+L+++GVEADDVIGTLA+QA
Sbjct: 111 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMVRALGIPLLVVEGVEADDVIGTLARQA- 169
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+++ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 170 SQNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 229
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I+G +G+ L +
Sbjct: 230 SSDNIPGVSGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGEKLLAEKDMADL 289
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD L + P+ L L + L++ F +Y+ +
Sbjct: 290 SYALATIKTDVALAFS----PQELALGDSNNDALIEYFGRYEFKR 330
>gi|351731099|ref|ZP_08948790.1| DNA polymerase I [Acidovorax radicis N35]
Length = 932
Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats.
Identities = 128/288 (44%), Positives = 180/288 (62%), Gaps = 11/288 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPV----GALYGTIKMLRKLYKNYRATYIACI 57
+ TL+LVDGSS +YRAF+A+PD+R + P GA+ G I M++ L K A Y C+
Sbjct: 4 KKTLVLVDGSSYLYRAFHAMPDLRAVPGDPTSAATGAIRGMINMMQALRKEVTADYAVCV 63
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDA G FR+ LY YKATR MP +L QI IH++V +GW ++ + GVEADDVI TL
Sbjct: 64 FDASGPTFRDALYTEYKATRSPMPDDLRSQIEPIHEVVDLLGWKVVAVPGVEADDVIATL 123
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
A A + ++VI+S+ DKD++QLV+ I +I+ + K D + + FGV P +VDY
Sbjct: 124 ANAAAAQ-GIEVIVSSGDKDLSQLVNEHITIIDTMSGKRRDVAGVTAEFGVPPTLMVDYQ 182
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL--NWLPK 233
+L+GD DN+PGV K+GPKTA K L +Y SL+++I NA IKGV G NLR A+ L
Sbjct: 183 ALVGDTVDNVPGVTKVGPKTAAKWLEEYGSLDSLIANAEAIKGVAGNNLREAIASGQLAL 242
Query: 234 LKKILTIKTDCDLTKNIVSIP--ESLILQPKDEKLLMQLFNKYKLNKL 279
++++T+KTDC L I +P + + L D L+ + KY L
Sbjct: 243 SRQLVTMKTDCALADYIPGLPAFDDITLDAPDNAGLLPFYEKYGFKGL 290
>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
Length = 932
Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats.
Identities = 126/286 (44%), Positives = 177/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP +L QI +HQMVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDEIFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + NN + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALFNNLDKIATLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + L + P D++ L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELDVTC----DELTVSPPDDEQLHQLFSRYEFKR 286
>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 957
Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats.
Identities = 131/296 (44%), Positives = 185/296 (62%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L G
Sbjct: 126 ANAGK-NVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL SL+ I N + + + + R A PKL+
Sbjct: 185 DASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL---SFRGAKTLAPKLEAEKD 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L E L++QP+ L++LF +Y+ + LN +M+
Sbjct: 242 AAALSYLLATIKTDVELEVT----HEQLVVQPQKRDELVELFGRYEFKRWLNEVMN 293
>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 957
Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats.
Identities = 131/296 (44%), Positives = 185/296 (62%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L G
Sbjct: 126 ANDGK-NVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL SL+ I N + + + + R A PKL+
Sbjct: 185 DASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL---SFRGAKTLAPKLEAEKD 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L E L++QP+ L++LF +Y+ + LN +M+
Sbjct: 242 AADLSYLLATIKTDVELEVT----HEQLVVQPQKRDELVELFGRYEFKRWLNEVMN 293
>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
gi|452743761|ref|ZP_21943621.1| DNA polymerase I [Mannheimia haemolytica serotype 6 str. H23]
gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
gi|452088205|gb|EME04568.1| DNA polymerase I [Mannheimia haemolytica serotype 6 str. H23]
Length = 952
Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats.
Identities = 134/295 (45%), Positives = 186/295 (63%), Gaps = 24/295 (8%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 KNPLVLVDGSSYLYRAFHAFPPLTNRLGEPTGAMYGVLNMLKSLISQVNPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+D+ +L+G
Sbjct: 126 -AKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D +DN+PGVK +G KTA+ LL SLE I N + I + + R A N+ PKL+
Sbjct: 185 DSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATL---SFRGAKNFAPKLEAEKA 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYK----LNKLN 280
+ TIKTD +L + L+ QP+D L QLF Y+ LN++N
Sbjct: 242 NADLSYLLATIKTDVELDVT----HDQLLTQPQDRAELAQLFEHYEFKRWLNEVN 292
>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 957
Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats.
Identities = 131/296 (44%), Positives = 185/296 (62%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L G
Sbjct: 126 ANAGK-NVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL SL+ I N + + + + R A PKL+
Sbjct: 185 DASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL---SFRGAKTLAPKLEAEKD 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L E L++QP+ L++LF +Y+ + LN +M+
Sbjct: 242 AAALSYLLATIKTDVELEVT----HEQLVVQPQKRDELVELFGRYEFKRWLNEVMN 293
>gi|190149819|ref|YP_001968344.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 957
Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 131/296 (44%), Positives = 185/296 (62%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L G
Sbjct: 126 ANAGK-NVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL SL+ I N + + + + R A PKL+
Sbjct: 185 DASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL---SFRGAKTLAPKLEAEKD 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L E L++QP+ L++LF +Y+ + LN +M+
Sbjct: 242 AAALSYLLATIKTDVELEVT----HEQLVVQPQKRDELVELFGRYEFKRWLNEVMN 293
>gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73]
gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans GPE PC73]
Length = 922
Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats.
Identities = 129/277 (46%), Positives = 171/277 (61%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAAGEPTGALFGVVNMLRATLKE-RPEYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA R MP L Q+ + Q+V A+G IL GVEADDVIGTLA Q V
Sbjct: 63 FRDALYPQYKANRPPMPDELRAQVEPMCQIVHALGITILRESGVEADDVIGTLALQGVGD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V IST DKD AQLV + L+N +++ ++ +FGV P +IVD +L+GD
Sbjct: 123 -GMDVTISTGDKDFAQLVRPGVQLVNTMSGSRMDSDAAVMEKFGVLPHQIVDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L Y SL+ +I NA+ IKG IG NLR AL LP + ++TIK
Sbjct: 182 IDNVPGVEKCGPKTAAKWLADYGSLDGVIANADAIKGKIGDNLRAALGRLPLNRDLVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L+ P +L L+ + + L L+ +Y +
Sbjct: 242 TDVVLSGG----PRTLGLREPEPEQLRGLYQRYGFTQ 274
>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 957
Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats.
Identities = 131/296 (44%), Positives = 185/296 (62%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L G
Sbjct: 126 ANAGK-NVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL SL+ I N + + + + R A PKL+
Sbjct: 185 DASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL---SFRGAKTLAPKLEAEKD 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L E L++QP+ L++LF +Y+ + LN +M+
Sbjct: 242 AAALSYLLATIKTDVELEVT----HEQLVVQPQKRDELVELFGRYEFKRWLNEVMN 293
>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
Length = 911
Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats.
Identities = 123/280 (43%), Positives = 169/280 (60%), Gaps = 7/280 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVD S ++RA++ALP + N P GAL G + MLRKL +++R YI +FDA
Sbjct: 4 QYPLILVDASGYLFRAYHALPKLTNSRGEPTGALVGVLNMLRKLIEDHRPEYIGVVFDAG 63
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G+ FR+ YP YKA R MP +L QI + +++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 64 GRGFRHDRYPDYKANRPAMPEDLRAQIEPLRTIIRAMGLPLLVVPGVEADDVIGTLATQA 123
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
L +IST DKD+AQLV + LIN D + +FGV PE+IVDY +L+G
Sbjct: 124 AAT-GLPTLISTGDKDLAQLVGEHVTLINTMTGTRLDPDGVREKFGVPPERIVDYLALMG 182
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV K GPKTA K + +Y L+ ++ A IKG IG++LR L+ LP + + T
Sbjct: 183 DSVDNVPGVPKCGPKTAAKWIAEYGDLDGVMAQAGTIKGKIGESLRAVLDQLPLARDLTT 242
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
IK D L P L P D + L + + + +L
Sbjct: 243 IKRDVALDLG----PTDLRPTPPDVETLRNWYERLESRRL 278
>gi|359299477|ref|ZP_09185316.1| DNA polymerase I [Haemophilus [parainfluenzae] CCUG 13788]
gi|402304367|ref|ZP_10823437.1| DNA-directed DNA polymerase [Haemophilus sputorum HK 2154]
gi|400377955|gb|EJP30820.1| DNA-directed DNA polymerase [Haemophilus sputorum HK 2154]
Length = 959
Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats.
Identities = 132/295 (44%), Positives = 184/295 (62%), Gaps = 21/295 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
+ L+LVDGSS +YRAF+A P + N D P GA+YG I ML+ L ++IA +FDAKG
Sbjct: 7 DPLVLVDGSSYLYRAFHAFPPLTNRDGEPTGAVYGVINMLKSLITQVSPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YK+ R MP +L QI +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 67 KTFRDELFEQYKSHRPPMPDDLRAQIQPLHAIIKALGIPLISIEGVEADDVIGTLAVQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V+IST DKDMAQLV+ I LIN NN + DR +I ++G+ PE I+DY +L GD
Sbjct: 126 ARDGKNVLISTGDKDMAQLVNEHIMLINTMNNTLLDREGVIEKYGIPPELIIDYLALQGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK---- 236
SDN+PGVK +G KTA+ LL SL+ I N + + + + R A PKL
Sbjct: 186 SSDNIPGVKGVGEKTALALLQGIGSLKTIYENLDKVASL---SFRGAKTMAPKLLAEKEM 242
Query: 237 ------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD L + L++QP+++ L+QLF +Y+ + LN +M+
Sbjct: 243 ADLSYLLATIKTDVPLEVK----HDELVMQPQNQDELVQLFGRYEFKRWLNEVMN 293
>gi|334702620|ref|ZP_08518486.1| DNA polymerase I [Aeromonas caviae Ae398]
Length = 916
Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats.
Identities = 130/291 (44%), Positives = 182/291 (62%), Gaps = 22/291 (7%)
Query: 3 NTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
N L+LVDGSS +YRAF+A D+R P GA+ M+R L K Y ++A +FDA
Sbjct: 5 NPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSLRKQYPDCHVAVVFDA 64
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKATR MP +L Q+ IHQM+KA+G+P L+++GVEADDVIGTLA+Q
Sbjct: 65 KGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADDVIGTLARQ 124
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L V+IST DKDMAQLVS+ + LI+ K DR +I +FGV PE I+DY +L+
Sbjct: 125 A-TEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK-- 236
GD DN+PG+ +G KTA+ LL S++ I A N+ V R + + K ++
Sbjct: 184 GDKVDNIPGMTGVGEKTALALLQGIGSIDEI---AANLDKVAALGFRGSKAFADKFREQE 240
Query: 237 --------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ TIKTD L +++ E L L P D++ L+ ++ +Y+L L
Sbjct: 241 EQVRLSYVLATIKTDVALEQSL----EELQLGPIDKEALLAVYREYELRNL 287
>gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
Length = 924
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 125/277 (45%), Positives = 177/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRSTLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + ++V+A+G IL I GVEADDVIGTLA Q V +
Sbjct: 63 FRDDLYEQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGVAQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+LKV IST DKD AQLV I L+N +++ ++ +FGV ++I+D +L+GD
Sbjct: 123 -DLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y L+ ++ A +KG IG+NLR AL LP ++++TI+
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIGENLRAALERLPLNRELVTIR 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD +L + P +L L+ +D L +L+ +Y +
Sbjct: 242 TDVELEAS----PTTLALREQDVPELTELYARYGFTQ 274
>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|420260959|ref|ZP_14763621.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|404511594|gb|EKA25467.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
WA-314]
Length = 932
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 180/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSKGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ N+ + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDSLFNHLDKIPTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ E + P DE+ L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELD---ITCDELNVSAPDDEQ-LHQLFSRYEFKR 286
>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
domains [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
5b str. L20]
Length = 957
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRGELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L G
Sbjct: 126 ANAGK-NVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL SL+ I N + + + + R A PKL+
Sbjct: 185 DASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL---SFRGAKTLAPKLEAEKD 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L E L++QP+ L++LF +Y+ + LN +M+
Sbjct: 242 AAALSYLLATIKTDVELEVT----HEQLVVQPQKRDELVELFGRYEFKRWLNEVMN 293
>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
Length = 950
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 182/286 (63%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L + ++IA +FDAK
Sbjct: 24 ENPLVLVDGSSYLYRAFHAFPPLTNSNGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAK 83
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++GVEADDVIGTLA+QA
Sbjct: 84 GKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLARQA 143
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+++ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+G
Sbjct: 144 -SQNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMG 202
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLP 232
D SDN+PGV +G KTA++LL S+ I N + I+G +G+ L +
Sbjct: 203 DSSDNIPGVSGVGEKTALRLLQGIGSMAQIYANLDKVAELPIRGAKKLGEKLLAEKDMAD 262
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD L + P+ L L D L++ F +Y+ +
Sbjct: 263 LSYALATIKTDVALAFS----PQELALGDSDNDALIEYFGRYEFKR 304
>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 932
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 180/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSKGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ E + P DE+ L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELD---ITCDELNVSAPDDEQ-LHQLFSRYEFKR 286
>gi|344209382|ref|YP_004794523.1| DNA polymerase I [Stenotrophomonas maltophilia JV3]
gi|343780744|gb|AEM53297.1| DNA polymerase I [Stenotrophomonas maltophilia JV3]
Length = 924
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 124/277 (44%), Positives = 177/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRSTLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + ++V+A+G IL I GVEADDVIGTLA Q + +
Sbjct: 63 FRDDLYEQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGLAQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+LKV IST DKD AQLV I L+N +++ ++ +FGV ++I+D +L+GD
Sbjct: 123 -DLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y L+ ++ A +KG IG+NLR AL LP ++++TI+
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIGENLRAALERLPLNRELVTIR 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD +L + P +L L+ +D L +L+ +Y +
Sbjct: 242 TDVELDAS----PTTLALREQDVPALTELYTRYGFTQ 274
>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
Length = 932
Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats.
Identities = 126/286 (44%), Positives = 177/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + L + P D+ L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELDITC----DELKVSPPDDDQLHQLFSRYEFKR 286
>gi|386310384|ref|YP_006006440.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
gi|418243097|ref|ZP_12869591.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|433548771|ref|ZP_20504819.1| DNA polymerase I [Yersinia enterocolitica IP 10393]
gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
gi|351777459|gb|EHB19671.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|431790285|emb|CCO67859.1| DNA polymerase I [Yersinia enterocolitica IP 10393]
Length = 932
Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 180/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSKGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPLEVCEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ E + P DE+ L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELD---ITCDELNVSAPDDEQ-LHQLFSRYEFKR 286
>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 957
Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats.
Identities = 131/296 (44%), Positives = 185/296 (62%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L G
Sbjct: 126 ANAGK-NVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL SL+ I N + + + + R A PKL+
Sbjct: 185 DASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL---SFRGAKTLAPKLEAEKD 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L E L++QP+ L++LF +Y+ + LN +M+
Sbjct: 242 AAALSYLLATIKTDVELEVT----HEQLVVQPQKRDELVELFGRYEFKRWLNEVMN 293
>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
Length = 932
Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 179/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISSLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L V+ E + P D++ L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELD---VTCDELKVTAPDDDQ-LYQLFSRYEFKR 286
>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
Length = 932
Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 180/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKADHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L V+ E + P D++ L QLF++Y+ +
Sbjct: 245 LSYKLATIKTDVELD---VTCDELKVSAPDDDQ-LHQLFSRYEFKR 286
>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
Length = 951
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 180/288 (62%), Gaps = 18/288 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAFYA P + N P GA+YG + ML+ L + T+IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFYAFPPLTNSLGEPTGAMYGVLNMLKSLIAQVQPTHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP +L QI +H ++KA+G P+L ++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE IVDY +L+G
Sbjct: 126 -SQQGKNVLISTGDKDMAQLVDDNIMLINTMNNSLLDRDGVIDKYGIPPELIVDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D SDN+PGV +G KTA+ LL S+ I N++ V G ++R A KL +
Sbjct: 185 DSSDNIPGVSGVGEKTALGLLQGIGSMAEIY---ANLEKVAGLSIRGAKKLGEKLS---S 238
Query: 240 IKTDCDLTKNIVSI---------PESLILQPKDEKLLMQLFNKYKLNK 278
K D DL+ + +I P+ L+L ++ L++ F +Y+ +
Sbjct: 239 AKADADLSYLLATIKTNVELDITPDQLVLGQNNQDQLIEYFARYEFKR 286
>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
Length = 951
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 180/288 (62%), Gaps = 18/288 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAFYA P + N P GA+YG + ML+ L + T+IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFYAFPPLTNSLGEPTGAMYGVLNMLKSLIAQVQPTHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP +L QI +H ++KA+G P+L ++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE IVDY +L+G
Sbjct: 126 -SQQGKNVLISTGDKDMAQLVDDNIMLINTMNNSLLDRDGVIDKYGIPPELIVDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D SDN+PGV +G KTA+ LL S+ I N++ V G ++R A KL +
Sbjct: 185 DSSDNIPGVSGVGEKTALGLLQGIGSMAEIY---ANLEKVAGLSVRGAKKLGEKLS---S 238
Query: 240 IKTDCDLTKNIVSI---------PESLILQPKDEKLLMQLFNKYKLNK 278
K D DL+ + +I P+ L+L ++ L++ F +Y+ +
Sbjct: 239 AKADADLSYLLATIKTNVELDITPDQLVLGQNNQDQLIEYFARYEFKR 286
>gi|422006555|ref|ZP_16353544.1| DNA polymerase I [Providencia rettgeri Dmel1]
gi|414098771|gb|EKT60416.1| DNA polymerase I [Providencia rettgeri Dmel1]
Length = 930
Score = 230 bits (586), Expect = 5e-58, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 183/289 (63%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ SYK+ R MP +L QI +H+MV+A+G P+L++ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVSGVEADDVIGTLACEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -SRKGMPVLISTGDKDMAQLVEPNITLINTMNNTILGPDEVKEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA+ LL SLE I N+++ + R + PK+
Sbjct: 185 DSSDNIPGVPGVGEKTALALLQGIGSLEAIY---NDLEAIAPLGFRGSKTLAPKMAENRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L K + E ++QP +K L QLF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVELEK---TCEELQVVQPDVDK-LHQLFSRYEFKR 286
>gi|385855992|ref|YP_005902505.1| DNA polymerase I [Neisseria meningitidis M01-240355]
gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355]
Length = 908
Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats.
Identities = 117/232 (50%), Positives = 156/232 (67%), Gaps = 3/232 (1%)
Query: 28 DNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQ 87
D P GALYG + MLR+L Y Y A +FDAKGKNFR+ ++ YKATR MP +L Q
Sbjct: 9 DGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQ 68
Query: 88 INLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIA 147
+ +V+ GWP+L+I VEADDVIGTLAKQ +H L+VI+ST DKDMAQLV ++
Sbjct: 69 AEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG-AEHGLRVIVSTGDKDMAQLVDERVT 127
Query: 148 LIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNS 205
L+N + + D + ++FGV P++I DY +L+GD DN+PGV+K GPKTAVK L Y S
Sbjct: 128 LVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGS 187
Query: 206 LENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESL 257
L+ ++ +A+ IKG +G+NLR AL LP ++TIKTD DL + ESL
Sbjct: 188 LQGVMEHASEIKGKVGENLRAALPRLPLSYDLVTIKTDVDLHAELSDGIESL 239
>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
Length = 954
Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats.
Identities = 130/296 (43%), Positives = 185/296 (62%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 KNLLVLVDGSSYLYRAFHAFPPLTNKQGEPTGAMYGVLNMLKSLIAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP L QI +H ++KA+G P+L I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLLSIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L+G
Sbjct: 126 -SQAGKHVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYLALLG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL S++ I N + + + + R A + PKL+
Sbjct: 185 DSSDNIPGVKGVGEKTAIALLQGIGSMQAIYANLDKVAEL---SFRGAKTFAPKLEAEKE 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD L + L+ QP+ L++LF +Y+ + LN +M+
Sbjct: 242 TADLSYLLATIKTDVALDVTY----DQLVTQPQQRDQLVELFGRYEFKRWLNEVMN 293
>gi|380512069|ref|ZP_09855476.1| DNA polymerase I [Xanthomonas sacchari NCPPB 4393]
Length = 923
Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats.
Identities = 128/277 (46%), Positives = 173/277 (62%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAAGEPTGALFGVVNMLRATLKE-RPEYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA R MP L Q+ + Q+V A+G IL GVEADDVIGTLA Q
Sbjct: 63 FRDDLYPQYKANRPPMPDELRAQVEPMCQIVHALGITILREDGVEADDVIGTLALQGAGD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV + L+N +++ ++ +FGV P +IVD +L+GD
Sbjct: 123 -GLDVTISTGDKDFAQLVRPGVQLVNTMSGSRMDSDAAVMEKFGVWPHQIVDLLALMGDA 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y SL+ +I +A++IKG IG NLR AL LP ++++TIK
Sbjct: 182 IDNVPGVEKCGPKTAAKWLAEYGSLDGVIAHADSIKGKIGDNLRAALERLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L P +L L+ ++ + L L+ +Y +
Sbjct: 242 TDVALPGG----PRTLGLREQEPEQLRGLYQRYGFTQ 274
>gi|424670757|ref|ZP_18107780.1| DNA polymerase I [Stenotrophomonas maltophilia Ab55555]
gi|401070244|gb|EJP78761.1| DNA polymerase I [Stenotrophomonas maltophilia Ab55555]
Length = 924
Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats.
Identities = 124/277 (44%), Positives = 177/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRSTLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + ++V+A+G IL + GVEADDVIGTLA Q V +
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRVPGVEADDVIGTLALQGVAQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+LKV IST DKD AQLV I L+N +++ ++ +FGV ++I+D +L+GD
Sbjct: 123 -DLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDLLALMGDA 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y L+ ++ A +KG IG+NLR AL LP ++++TI+
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPAMKGKIGENLRAALERLPLNRELVTIR 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD +L + P +L L+ +D L +L+ +Y +
Sbjct: 242 TDVELDAS----PTTLALREQDVPELTELYTRYGFTQ 274
>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 952
Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats.
Identities = 133/295 (45%), Positives = 185/295 (62%), Gaps = 24/295 (8%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L ++IA +FD K
Sbjct: 6 KNPLVLVDGSSYLYRAFHAFPPLTNRLGEPTGAMYGVLNMLKSLISQVNPSHIAVVFDTK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+D+ +L+G
Sbjct: 126 -AKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D +DN+PGVK +G KTA+ LL SLE I N + I + + R A N+ PKL+
Sbjct: 185 DSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATL---SFRGAKNFAPKLEAEKA 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYK----LNKLN 280
+ TIKTD +L + L+ QP+D L QLF Y+ LN++N
Sbjct: 242 NADLSYLLATIKTDVELDVT----HDQLLTQPQDRAELAQLFEHYEFKRWLNEVN 292
>gi|344337497|ref|ZP_08768431.1| DNA polymerase I [Thiocapsa marina 5811]
gi|343802450|gb|EGV20390.1| DNA polymerase I [Thiocapsa marina 5811]
Length = 905
Score = 229 bits (585), Expect = 7e-58, Method: Composition-based stats.
Identities = 114/244 (46%), Positives = 159/244 (65%), Gaps = 3/244 (1%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVD S ++RA++ALP + N GAL G + MLRKL + +R YI +FDA GK
Sbjct: 7 LILVDASGYLFRAYHALPKLTNSKGEATGALMGVVSMLRKLIEEHRPDYIGVVFDAPGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +YP YKA R MP L QI + ++++A+G P+L++ VEADDVIGTLA +A +
Sbjct: 67 FRDDIYPEYKANRPAMPDELREQILPLQEVIRAMGLPLLVVPDVEADDVIGTLATRAAAQ 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ ++ST DKDMAQLV + L+N + + D + +FGV PE+IVDY SL+GD
Sbjct: 127 -GIPTLVSTGDKDMAQLVGEHVTLVNTMTDTVLDPAGVKEKFGVPPERIVDYLSLMGDSI 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTA K + + L+ +I NA IKG +G+NLR L+ LP +++ TIK
Sbjct: 186 DNIPGVDKCGPKTAAKWIADFGDLDGVIANAETIKGKVGENLRAVLDRLPLSRELTTIKR 245
Query: 243 DCDL 246
D L
Sbjct: 246 DVAL 249
>gi|406903016|gb|EKD45223.1| hypothetical protein ACD_70C00016G0004 [uncultured bacterium]
Length = 894
Score = 229 bits (585), Expect = 8e-58, Method: Composition-based stats.
Identities = 122/274 (44%), Positives = 188/274 (68%), Gaps = 7/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS ++RA++ALP + P GA+YG + M++KL YIA +FD KGK
Sbjct: 9 LILIDGSSYLFRAYHALPPLTTSAGVPTGAVYGVMNMIKKLMSTTPFDYIAVVFDPKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L+ YKA R MP L +QI +H++++A G P+++ +GVEADDVIGTLA+ A K
Sbjct: 69 FRHELFKEYKANRTVMPDELRVQIAPLHELIRAFGLPLIVQEGVEADDVIGTLARFA-EK 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ +IST DKDMAQLV+ +I LIN ++K++D + +FGV+P++++ Y +L+GD S
Sbjct: 128 KGIDTLISTMDKDMAQLVNARITLINTMSDKMYDAAAVQEKFGVTPDQMIGYLALMGDAS 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K+G KTAV L++Y SL+NI+ +AN+I G +G++ R L+ L KK++TI+
Sbjct: 188 DNIPGVPKVGSKTAVVWLSKYKSLDNIVKHANDIPGKLGESFRAHLDDLALSKKLVTIQ- 246
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
CD+T ++ +L LQ K+ + L LF++ +
Sbjct: 247 -CDVTMDLDL--SALQLQEKNVEKLRALFSELEF 277
>gi|416108059|ref|ZP_11590897.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348004683|gb|EGY45181.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 431
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 128/286 (44%), Positives = 177/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I+G +GK L A +
Sbjct: 186 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGKKL-LAEKAMAD 244
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD L + P L + D L+ F +Y+ +
Sbjct: 245 LSYALATIKTDVMLEFS----PHELAIGDSDNDALIAYFGRYEFKR 286
>gi|408822585|ref|ZP_11207475.1| DNA polymerase I [Pseudomonas geniculata N1]
Length = 924
Score = 229 bits (585), Expect = 9e-58, Method: Composition-based stats.
Identities = 125/277 (45%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRSTLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + ++V+A+G IL I GVEADDVIGTLA Q V +
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGVAQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+LKV IST DKD AQLV I L+N +++ ++ +FGV ++I+D +L+GD
Sbjct: 123 -DLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y L+ ++ A +KG IG+NLR AL LP ++++TI+
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIGENLRAALERLPLNRELVTIR 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD +L + P L L+ +D L +L+ +Y +
Sbjct: 242 TDVELDAS----PTMLALREQDVPELTELYARYGFTQ 274
>gi|416083777|ref|ZP_11586899.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348010514|gb|EGY50552.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
Length = 381
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/286 (44%), Positives = 177/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 36 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 95
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 96 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 154
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 155 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 214
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I+G +GK L A +
Sbjct: 215 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKAAELPIRGAKKLGKKL-LAEKAMAD 273
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD L + P L + D L+ F +Y+ +
Sbjct: 274 LSYALATIKTDVMLEFS----PHELAIGDSDNDALIAYFGRYEFKR 315
>gi|386743146|ref|YP_006216325.1| DNA polymerase I [Providencia stuartii MRSN 2154]
gi|384479839|gb|AFH93634.1| DNA polymerase I [Providencia stuartii MRSN 2154]
Length = 930
Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats.
Identities = 126/289 (43%), Positives = 180/289 (62%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ SYK+ R MP +L QI +H+MV+A+G P+L++ GVEADDVIGTLA+QA
Sbjct: 66 GKTFRDELFESYKSHRPPMPDDLREQIAPLHEMVEAMGLPLLVVSGVEADDVIGTLARQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV I LIN N I + ++GV PE I+D+ +L+G
Sbjct: 126 SQK-GIPVLISTGDKDMAQLVEPNITLINTMTNTILGPQEVEDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA+ LL SL+ I ++ + I + R + PK++
Sbjct: 185 DSSDNIPGVPGVGEKTALALLQGIGSLKEIYDSLDKIAPL---GFRGSKTLAPKMEENRE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L K+ E L + D L QLF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVELEKSC----EELAISEPDTDKLYQLFSRYEFKR 286
>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
Length = 930
Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 182/289 (62%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ SYK+ R MP +L QI +H+MV+A+G P+L++ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVSGVEADDVIGTLACEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -SRKGMPVLISTGDKDMAQLVEPNITLINTMNNTILGPDEVKEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA+ LL SLE I N+++ + R + PK+
Sbjct: 185 DSSDNIPGVPGVGEKTALALLQGIGSLEAIY---NDLEAIAPLGFRGSKTLAPKMAENRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L K + E + QP +K L QLF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVELEK---TCEELQVAQPDVDK-LHQLFSRYEFKR 286
>gi|386720463|ref|YP_006186789.1| DNA polymerase I [Stenotrophomonas maltophilia D457]
gi|384080025|emb|CCH14628.1| DNA polymerase I [Stenotrophomonas maltophilia D457]
Length = 924
Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats.
Identities = 124/277 (44%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRSTLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + ++V+A+G IL I GVEADDVIGTLA Q + +
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGLAQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+LKV IST DKD AQLV I L+N +++ ++ +FGV ++I+D +L+GD
Sbjct: 123 -DLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDLLALMGDA 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y L+ ++ A +KG IG+NLR AL LP ++++TI+
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPAMKGKIGENLRAALERLPLNRELVTIR 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L + P +L L+ +D L +L+ +Y +
Sbjct: 242 TDVQLDAS----PTTLALREQDVPALTELYTRYGFTQ 274
>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 917
Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats.
Identities = 129/291 (44%), Positives = 181/291 (62%), Gaps = 22/291 (7%)
Query: 3 NTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
N L+LVDGSS +YRAF+A D+R P GA+ M+R L K Y ++A +FDA
Sbjct: 5 NPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSLRKQYPDCHVAVVFDA 64
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKA R MP +L Q+ IHQM+KA+G+P L+++GVEADDVIGTLA+Q
Sbjct: 65 KGKTFRDDIYPEYKANRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADDVIGTLARQ 124
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L V+IST DKDMAQLVS+ + LI+ K DR +I +FGV PE I+DY +L+
Sbjct: 125 A-TEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK-- 236
GD DN+PG+ +G KTA+ LL S++ I A N+ V R + + K ++
Sbjct: 184 GDKVDNIPGMTGVGEKTALALLQGIGSIDEI---AANLDKVAALGFRGSKAFADKFREQE 240
Query: 237 --------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ TIKTD L +++ E L L P D++ L+ ++ +Y+L L
Sbjct: 241 EQVRLSYVLATIKTDVALEQSL----EELQLGPIDKEALLAVYREYELRNL 287
>gi|384085835|ref|ZP_09997010.1| DNA polymerase I [Acidithiobacillus thiooxidans ATCC 19377]
Length = 907
Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats.
Identities = 117/258 (45%), Positives = 169/258 (65%), Gaps = 5/258 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q+ +LVD SS +YRAF+ALPD+R DN P GA++G MLR+L K Y + I +FDA
Sbjct: 3 QDPRILVDASSFLYRAFHALPDLRAPDNLPTGAIFGVANMLRRLAKEYPSDEIIVVFDAP 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ LYP YKA R MP +L QI L+H+ ++A G P++++ VEADDVIGTLA A
Sbjct: 63 GGTFRDRLYPEYKAQRPAMPEDLRAQIPLLHEWIQATGLPLVLVPDVEADDVIGTLAGSA 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLIG 179
+ +V+I T DKDMAQLV++++ L++ K D + R+GV+PE I D +L G
Sbjct: 123 QSGQ--QVVIVTGDKDMAQLVNDQVTLLDTMKGVKTDVAGVWERYGVAPEHIADLLALTG 180
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D +DN+PGV GPKTA K + QY SL+ ++ +A+ I G IG+ LR +L++LP + T
Sbjct: 181 DKADNIPGVPGAGPKTAAKWIQQYGSLDGVLAHADEIGGKIGEALRASLDYLPLSLDLAT 240
Query: 240 IKTDCDL-TKNIVSIPES 256
I+ + L ++ +PE+
Sbjct: 241 IRCNLHLPEQSYQRVPEN 258
>gi|344201171|ref|YP_004785497.1| DNA polymerase I [Acidithiobacillus ferrivorans SS3]
gi|343776615|gb|AEM49171.1| DNA polymerase I [Acidithiobacillus ferrivorans SS3]
Length = 899
Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats.
Identities = 118/248 (47%), Positives = 163/248 (65%), Gaps = 6/248 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q+ +LVD SS +YRAF+ALPD+R DN P GA+YG MLR+L K Y + I IFDA
Sbjct: 3 QDPRILVDASSFLYRAFHALPDLRAPDNLPTGAIYGVANMLRRLLKEYPSDEIIVIFDAP 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ LYP YKA R MP L Q++L+++ ++A+G P++I VEADDVIGTLA+ A
Sbjct: 63 GGTFRDRLYPEYKAQRPSMPEELRAQVSLLYEWIRAMGLPLVIEPDVEADDVIGTLAQAA 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLIG 179
+V++ T DKDMAQLVS ++ LI+ K D + RFGV PE+I D +L G
Sbjct: 123 APDQ--EVLVITGDKDMAQLVSPRVRLIDTMKGVATDVAGVEERFGVPPERIADLLALTG 180
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV GPKTA K L QY L+ ++ +A +I G +G+ LR A ++LP +++ T
Sbjct: 181 DKVDNIPGVPGAGPKTAAKWLMQYGDLDGVLAHAGDIGGKVGEALRAAAHYLPLSRELAT 240
Query: 240 IKTDCDLT 247
I+ C++T
Sbjct: 241 IR--CNVT 246
>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
gi|188023732|gb|EDU61772.1| DNA-directed DNA polymerase [Providencia stuartii ATCC 25827]
Length = 930
Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats.
Identities = 126/289 (43%), Positives = 180/289 (62%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ SYK+ R MP +L QI +H+MV+A+G P+L++ GVEADDVIGTLA+QA
Sbjct: 66 GKTFRDELFESYKSHRPPMPDDLREQIAPLHEMVEAMGLPLLVVSGVEADDVIGTLARQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV I LIN N I + ++GV PE I+D+ +L+G
Sbjct: 126 SQK-GIPVLISTGDKDMAQLVEPNITLINTMTNTILGPQEVEDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA+ LL SL+ I ++ + I + R + PK++
Sbjct: 185 DSSDNIPGVPGVGEKTALALLQGIGSLKEIYDSLDKIAPL---GFRGSKTLAPKMEENRE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L K+ E L + D L QLF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVELEKSC----EELAISEPDTDKLYQLFSRYEFKR 286
>gi|387773168|ref|ZP_10128763.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
gi|386905208|gb|EIJ69979.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
Length = 950
Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats.
Identities = 130/296 (43%), Positives = 183/296 (61%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNREGEPTGAMYGVVNMLKSLISQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP L QI +H ++KA+G P++ ++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLISVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE ++D+ +L G
Sbjct: 126 -AKEGKHVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELVIDWLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL S++ I N + + + + R A + PKL
Sbjct: 185 DSSDNIPGVKGVGEKTALALLQGIGSIKTIYENLDKVAEL---SFRGAKTFAPKLLAEKE 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L + L P+D L++LF KY+ K LN +M+
Sbjct: 242 MADLSYLLATIKTDVELDVT----HDQLTTSPQDRDKLVELFGKYEFKKWLNEVMN 293
>gi|392952206|ref|ZP_10317761.1| DNA polymerase I [Hydrocarboniphaga effusa AP103]
gi|391861168|gb|EIT71696.1| DNA polymerase I [Hydrocarboniphaga effusa AP103]
Length = 937
Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats.
Identities = 117/279 (41%), Positives = 176/279 (63%), Gaps = 7/279 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
++ L+L+DGSS ++RAF+ALP + N P GA+YG + ML++L + Y I +FD
Sbjct: 7 EHPLILIDGSSWLFRAFHALPPLSNSRGEPTGAVYGIVNMLKRLCREYEPQRICVVFDPS 66
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FRN LY YKA R + P L Q + ++KA+G+P+L++ GVEADDVIGTL +Q
Sbjct: 67 GPVFRNELYADYKANRDETPAELSAQYPDVVAVIKALGFPLLVVDGVEADDVIGTLTRQG 126
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ L V+I T+DKDMAQLV + L++ N+ DR +I +FGV PE+I+DY +L+G
Sbjct: 127 -RERGLPVLIVTSDKDMAQLVDEHVHLLDTMKNRRMDRAGVIEKFGVPPERIIDYLALVG 185
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV +GPKTA K L ++ SL+ I + + I G IG+ LR AL+ LP ++ T
Sbjct: 186 DTVDNIPGVPGVGPKTAAKWLTEFGSLDAIRDRSGEIGGKIGEKLRAALDILPLSHRLAT 245
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
I D +L + + L+ +D + L+ L+ K + ++
Sbjct: 246 IICDVELPVQL----DELVPGERDVEQLVALYRKLEFHR 280
>gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1]
gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1]
Length = 904
Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats.
Identities = 125/279 (44%), Positives = 172/279 (61%), Gaps = 10/279 (3%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
+ L+LVDGSS +YRAF+ALP + N + P GALYG + ML KL A +FDA G
Sbjct: 6 DRLVLVDGSSYLYRAFHALPALTNANGEPTGALYGVVNMLHKLLAEEPEARFAVVFDAPG 65
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YKA R MP L Q + ++ A+G P+L + GVEADDVIGTLA +A
Sbjct: 66 KTFRDELFEQYKAHRPPMPDELRAQREPLKAIIAALGVPVLEVPGVEADDVIGTLAARA- 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V+IST DKDMAQLV ++ L+N + D + +FGV PE I DY +L+GD
Sbjct: 125 ---SGPVLISTTDKDMAQLVDEQVTLLNTMSGTRLDPEGVREKFGVPPELIRDYLALVGD 181
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
SDN+PGV K+GPKTA K LN Y SL+ + A+ I+G +G++LR L+ LP ++TI
Sbjct: 182 TSDNIPGVPKVGPKTAAKWLNAYGSLDALREQADEIRGKVGESLRAHLDELPLSVDLVTI 241
Query: 241 KTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ CDL + PE L+ Q D + L L+ +Y + +
Sbjct: 242 R--CDLALEVA--PEDLVRQSPDRETLGGLYQRYGMRRF 276
>gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
Length = 924
Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats.
Identities = 124/277 (44%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRSTLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + ++V+A+G IL I GVEADDVIGTLA Q + +
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGLAQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+LKV IST DKD AQLV I L+N +++ ++ +FGV ++I+D +L+GD
Sbjct: 123 -DLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMDKFGVRADQIIDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y L+ ++ A +KG IG+NLR AL LP ++++TI+
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIGENLRAALERLPLNRELVTIR 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L + P +L L+ +D L +L+ +Y +
Sbjct: 242 TDVALDAS----PTTLALREQDVPELTELYTRYGFTQ 274
>gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945]
gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18]
gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140]
gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1]
gi|385336953|ref|YP_005890900.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945]
gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 908
Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats.
Identities = 117/232 (50%), Positives = 155/232 (66%), Gaps = 3/232 (1%)
Query: 28 DNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQ 87
D P GALYG + MLR+L Y Y A +FDAKGKNFR+ ++ YKATR MP +L Q
Sbjct: 9 DGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQ 68
Query: 88 INLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIA 147
+ +V+ GWP+L+I VEADDVIGTLAKQ +H L+VI+ST DKDMAQLV ++
Sbjct: 69 AEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG-AEHGLRVIVSTGDKDMAQLVDERVT 127
Query: 148 LIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNS 205
L+N + + D + ++FGV P++I DY +LIGD DN+PGV+K GPKTAVK L Y S
Sbjct: 128 LVNTMSGETLDIEGVKAKFGVRPDQIRDYLALIGDKVDNVPGVEKCGPKTAVKWLEAYGS 187
Query: 206 LENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESL 257
L+ ++ +A IKG +G+NL+ AL LP ++TIKTD DL + ESL
Sbjct: 188 LQGVMEHAPEIKGKVGENLQAALPQLPLSYDLVTIKTDVDLHTELSDGIESL 239
>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 952
Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats.
Identities = 133/295 (45%), Positives = 184/295 (62%), Gaps = 24/295 (8%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L ++IA +FD K
Sbjct: 6 KNPLVLVDGSSYLYRAFHAFPPLTNRLGEPTGAMYGVLNMLKSLISQVNPSHIAVVFDTK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR L+ YK+ R MP +L QI +H+++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRYELFKQYKSHRPPMPDDLRPQIEPLHRIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+D+ +L+G
Sbjct: 126 -AKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D +DN+PGVK +G KTA+ LL SLE I N + I + + R A N+ PKL+
Sbjct: 185 DSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATL---SFRGAKNFAPKLEAEKA 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYK----LNKLN 280
+ TIKTD +L + L+ QP+D L QLF Y+ LN++N
Sbjct: 242 NADLSYLLATIKTDVELDVT----HDQLLTQPQDRAELAQLFEHYEFKRWLNEVN 292
>gi|445053310|ref|ZP_21368314.1| DNA polymerase I [Escherichia coli 95.0083]
gi|444659467|gb|ELW31882.1| DNA polymerase I [Escherichia coli 95.0083]
Length = 516
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
Length = 927
Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats.
Identities = 128/284 (45%), Positives = 175/284 (61%), Gaps = 16/284 (5%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K + Y+A + DA GK
Sbjct: 4 LILIDGSSYLYRAFHALPPLTNAAGEPTGALFGVVNMLRATLKE-KPDYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA R MP L Q+ + +V A+G IL + GVEADDVIGTLA QA
Sbjct: 63 FRDDLYPQYKANRPPMPDELRAQVQPMCDIVHALGIDILRVDGVEADDVIGTLATQAADA 122
Query: 125 HNLKVIISTNDKDMAQLV-------SNKIALINN---NKIHDRTTIISRFGVSPEKIVDY 174
++V IST DKD AQLV IAL+N +++ +I +FGV +IVD
Sbjct: 123 -GMEVTISTGDKDFAQLVRAPDGNGGGSIALVNTMTGSRMDSDAAVIEKFGVPAGRIVDL 181
Query: 175 FSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL 234
+L+GD DN+PGV+K GPKTA K + ++ SLE +I A IKG IG NLR AL+ LP
Sbjct: 182 LALMGDTIDNVPGVEKCGPKTAAKWIGEHGSLEGVIAAAPGIKGKIGDNLRAALDRLPLN 241
Query: 235 KKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++++TI+TD L + PE+L+L+ + L L+ +Y N+
Sbjct: 242 RELVTIRTDVPLEQG----PEALVLRERHVDQLRGLYARYGFNQ 281
>gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
Length = 901
Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats.
Identities = 120/281 (42%), Positives = 181/281 (64%), Gaps = 11/281 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RAFYALP + P GA++G IKML +LY +Y+ Y A +FDA GK
Sbjct: 8 VVLVDGSSYLFRAFYALPPLTTQKGHPTGAMHGVIKMLMRLYDDYQPNYFAVVFDAAGKT 67
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +YP YKA R MP +L +QI +HQ++ A+G+P+++ GVEADDVIGTLA+QA+ +
Sbjct: 68 FRHQIYPDYKANRPPMPEDLAVQIQPLHQLITALGFPLIMESGVEADDVIGTLARQALAE 127
Query: 125 HNLKVIISTNDKDMAQLVSN-KIALINN--NKIHDRTTIISRFGV---SPEKIVDYFSLI 178
+ +VIIS+ DKDM QL+++ I L++ N+ + + RF + + +++D+ +L+
Sbjct: 128 -DYQVIISSGDKDMTQLLTHADITLLDTMKNETITASDVAKRFKIEQLTAAQVIDFLALV 186
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD SDN+PGV+K+G KTA K L Y SL+ II NA+ I+G +G NLR L L +++
Sbjct: 187 GDKSDNIPGVEKVGAKTAEKWLATYGSLDAIIENADKIRGKVGDNLRAGLAQLKCSQQLA 246
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
TI DL I + ++ L L +Y+LN +
Sbjct: 247 TINQTLDLPYRIADLARG----AENPHKLAALCAQYELNDI 283
>gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50]
Length = 665
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKIMAAKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 245 LSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
Length = 932
Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 180/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L YR +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSHLDKISTLTFRGAKTMSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + P +E+LL QLF++Y+ +
Sbjct: 245 LSYQLATIKTDVELD---ITCDQLTVSSPDNEQLL-QLFSRYEFKR 286
>gi|407692488|ref|YP_006817277.1| DNA polymerase I [Actinobacillus suis H91-0380]
gi|407388545|gb|AFU19038.1| DNA polymerase I [Actinobacillus suis H91-0380]
Length = 957
Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats.
Identities = 130/296 (43%), Positives = 184/296 (62%), Gaps = 21/296 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLIAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L G
Sbjct: 126 ANDGK-NVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK +G KTA+ LL SL+ I N + + + + R A PKL+
Sbjct: 185 DASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL---SFRGAKTLAPKLEAEKE 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L E L++Q + L++LF +Y+ + LN +M+
Sbjct: 242 AADLSYLLATIKTDVELEVT----HEQLVVQSQKRDELVELFGRYEFKRWLNEVMN 293
>gi|385854026|ref|YP_005900540.1| DNA polymerase I [Neisseria meningitidis H44/76]
gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76]
Length = 916
Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats.
Identities = 116/232 (50%), Positives = 156/232 (67%), Gaps = 3/232 (1%)
Query: 28 DNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQ 87
D P GALYG + MLR+L Y Y A +FDAKGKNFR+ ++ YKATR MP +L Q
Sbjct: 9 DGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQ 68
Query: 88 INLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIA 147
+ +V+ GWP+L+I VEADDVIGTLAKQ +H L+VI+ST DKDMAQLV ++
Sbjct: 69 AEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQG-AEHGLRVIVSTGDKDMAQLVDERVT 127
Query: 148 LIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNS 205
L+N +++ D + ++FGV P++I DY +L+GD DN+PGV+K GPKTAVK L Y S
Sbjct: 128 LVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGS 187
Query: 206 LENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESL 257
L ++ +A+ IKG +G+NL+ AL LP ++TIKTD DL + ESL
Sbjct: 188 LAGVMEHASEIKGKVGENLQAALPQLPLSYDLVTIKTDVDLHAELSDGIESL 239
>gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145]
gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145]
Length = 924
Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats.
Identities = 124/292 (42%), Positives = 182/292 (62%), Gaps = 15/292 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +LVDGSS ++RAF+A P + N P GA+YG + MLR L K Y+ +++A +FDAK
Sbjct: 7 ENPFILVDGSSYLFRAFHAPPHLTNSAGEPTGAVYGVVNMLRSLLKRYKPSHMAVVFDAK 66
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L QI +H +VKA+G P+L ++GVEADDVIGTLAKQA
Sbjct: 67 GKTFRSDIYDEYKAHRPPMPDDLRTQIEPLHAIVKAMGLPLLCVEGVEADDVIGTLAKQA 126
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K +IST DKDMAQLV++ + LIN + + D + +I +FGV P +I+DY +L+G
Sbjct: 127 GDKGRF-TLISTGDKDMAQLVNDHVMLINTMTDTLLDESGVIEKFGVKPNQIIDYLALMG 185
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ K+G KTA +L S++ I + N + + + K L + L
Sbjct: 186 DSSDNIPGLPKVGEKTAQAMLQGIPSIDKIYEDINAVTELGFRGAKSMPKKLEEFKDQLL 245
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLM 283
+++ TIK D +L P++L ++P D L L+ K + + LN L+
Sbjct: 246 MSRELATIKCDVELE----CAPDALTIEPADTDQLQTLYGKMEFRRWLNELL 293
>gi|424789171|ref|ZP_18215867.1| DNA-directed DNA polymerase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422798725|gb|EKU26775.1| DNA-directed DNA polymerase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 922
Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats.
Identities = 128/277 (46%), Positives = 172/277 (62%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNPAGEPTGALFGVVNMLRATLKE-RPEYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + Q+V A+G IL GVEADDVIGTLA Q
Sbjct: 63 FRDDLYAQYKANRPPMPDELRAQVEPMCQIVHALGISILREGGVEADDVIGTLALQGAGD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L+V IST DKD AQLV + L+N +++ ++ +FGV P +IVD +L+GD
Sbjct: 123 -GLEVTISTGDKDFAQLVRPGVQLVNTMSGSRMDSDAAVMEKFGVWPSQIVDLLALMGDA 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTA K L +Y SL+ ++ NA+ IKG IG+NLR AL LP ++++TIK
Sbjct: 182 IDNVPGVDKCGPKTAAKWLAEYGSLDGVMANADAIKGKIGENLRAALARLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L P +L L+ +D + L L+ +Y +
Sbjct: 242 TDVALPGG----PRTLGLREQDPEQLRGLYQRYGFTQ 274
>gi|389811664|ref|ZP_10206203.1| DNA polymerase I [Rhodanobacter thiooxydans LCS2]
gi|388440171|gb|EIL96577.1| DNA polymerase I [Rhodanobacter thiooxydans LCS2]
Length = 915
Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats.
Identities = 124/274 (45%), Positives = 169/274 (61%), Gaps = 8/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K Y+A + DA G
Sbjct: 4 LILIDGSSYLYRAFHALPPLSNARGEPTGALFGVVNMLRATLKA-NPDYLAFVSDAPGPT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + V A+G+PIL + GVE DDVIGTLA QA
Sbjct: 63 FRDALYDRYKANRPPMPEELRSQVEPMLATVGALGFPILRVGGVEGDDVIGTLALQA-QA 121
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++V +ST+DKDMAQLV + L+N DR ++++FGV PE+I+D+ +L GD
Sbjct: 122 LGIEVEVSTSDKDMAQLVGPHVTLVNTMTGTTTDRAGVLAKFGVQPEQIIDFLALTGDAI 181
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTA K L +Y +L+ +I NA+ I G IG++LR L LP +++ TIKT
Sbjct: 182 DNIPGVPKCGPKTAAKWLAEYATLDGVIANADKIGGKIGESLRATLPQLPLSRQLATIKT 241
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L P L + D LL +L+ +Y+
Sbjct: 242 DVALEFG----PTDLTRREADTTLLRELYTRYEF 271
>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 957
Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats.
Identities = 131/298 (43%), Positives = 186/298 (62%), Gaps = 25/298 (8%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV++ I LIN NN + DR +I ++G+ PE I+DY +L G
Sbjct: 126 ANAGK-NVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI-----KGVIGKNLRF-------A 227
D SDN+PGVK +G KTA+ LL SL+ I N + + +G L+ A
Sbjct: 185 DASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLALKLEAEKDAAA 244
Query: 228 LNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
L++L + TIKTD +L E L++QP+ L++LF +Y+ + LN +M+
Sbjct: 245 LSYL-----LATIKTDVELEVT----HEQLVVQPQKRDELVELFGRYEFKRWLNEVMN 293
>gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a]
gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a]
Length = 924
Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats.
Identities = 123/277 (44%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRSTLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + ++V+A+G IL + GVEADDVIGTLA Q + +
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRVPGVEADDVIGTLALQGLAQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+LKV IST DKD AQLV I L+N +++ ++ +FGV ++I+D +L+GD
Sbjct: 123 -DLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDLLALMGDT 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y L+ ++ A +KG IG+NLR AL LP ++++TI+
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIGENLRAALERLPLNRELVTIR 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L + P +L L+ +D L +L+ +Y +
Sbjct: 242 TDLALDAS----PTTLALREQDVPELTELYARYGFTQ 274
>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
Length = 900
Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats.
Identities = 119/262 (45%), Positives = 168/262 (64%), Gaps = 11/262 (4%)
Query: 14 IYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSY 73
++RAF+ALP + N P GA+ G I M+R L K + + + +FDAKG FRN +Y Y
Sbjct: 1 MFRAFHALPPLTNSKGAPTGAVKGVINMIRSLMKGFPESRVIVVFDAKGPTFRNEIYAEY 60
Query: 74 KATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133
KA R MP +L +QI IH++++A+G P+LI+ GVEADDVIGTLAKQA T ++ST
Sbjct: 61 KANRPPMPDDLRVQIEPIHEIIRAMGLPLLIVDGVEADDVIGTLAKQA-TDSGQDALVST 119
Query: 134 NDKDMAQLVSNKI--ALINNNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKI 191
DKDMAQLVS + N DR +I +FG+ PE+I+DY +L+GD DN+PGV K
Sbjct: 120 GDKDMAQLVSPHVTLMNTMTNTTMDRDGVIEKFGIPPERIIDYLALVGDKVDNIPGVHKC 179
Query: 192 GPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIV 251
GPKTA+K L Y+S++ +I++A IKG IG+ LR A+ LP + TI+ + +L +++
Sbjct: 180 GPKTALKWLEAYDSMQGVIDHAEEIKGKIGEYLREAVPTLPMSYDLATIRCELELPQSLA 239
Query: 252 SIPESLILQP--KDEKLLMQLF 271
I QP D + L+ LF
Sbjct: 240 EI------QPVEADRERLLALF 255
>gi|440730656|ref|ZP_20910734.1| DNA polymerase I [Xanthomonas translucens DAR61454]
gi|440378040|gb|ELQ14673.1| DNA polymerase I [Xanthomonas translucens DAR61454]
Length = 922
Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats.
Identities = 128/277 (46%), Positives = 171/277 (61%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNPAGEPTGALFGVVNMLRATLKE-RPEYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + Q+V A+G IL GVEADDVIGTLA Q
Sbjct: 63 FRDDLYAQYKANRPPMPDELRAQVEPMCQIVHALGISILREGGVEADDVIGTLALQGAGD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV + L+N +++ ++ +FGV P +IVD +L+GD
Sbjct: 123 -GLDVTISTGDKDFAQLVRPGVQLVNTMSGSRMDSDAAVMEKFGVWPSQIVDLLALMGDA 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTA K L +Y SL+ ++ NA+ IKG IG+NLR AL LP ++++TIK
Sbjct: 182 IDNVPGVDKCGPKTAAKWLAEYGSLDGVMANADAIKGKIGENLRAALARLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L P +L L+ +D + L L+ +Y +
Sbjct: 242 TDVALPGG----PRTLGLREQDPEQLRGLYQRYGFTQ 274
>gi|433677503|ref|ZP_20509476.1| DNA polymerase I [Xanthomonas translucens pv. translucens DSM
18974]
gi|430817375|emb|CCP39879.1| DNA polymerase I [Xanthomonas translucens pv. translucens DSM
18974]
Length = 922
Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats.
Identities = 128/277 (46%), Positives = 171/277 (61%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNPAGEPTGALFGVVNMLRATLKE-RPEYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + Q+V A+G IL GVEADDVIGTLA Q
Sbjct: 63 FRDDLYAQYKANRPPMPDELRAQVEPMCQIVHALGISILREGGVEADDVIGTLALQGAGD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
L V IST DKD AQLV + L+N +++ ++ +FGV P +IVD +L+GD
Sbjct: 123 -GLDVTISTGDKDFAQLVRPGVQLVNTMSGSRMDSDAAVMEKFGVWPSQIVDLLALMGDA 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTA K L +Y SL+ ++ NA+ IKG IG+NLR AL LP ++++TIK
Sbjct: 182 IDNVPGVDKCGPKTAAKWLAEYGSLDGVMANADAIKGKIGENLRAALARLPLNRELVTIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L P +L L+ +D + L L+ +Y +
Sbjct: 242 TDVALPGG----PRTLGLREQDPEQLRGLYQRYGFTQ 274
>gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703]
gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703]
Length = 931
Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats.
Identities = 126/288 (43%), Positives = 176/288 (61%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y +++A +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYHPSHVAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YK+ R MP +L QI +H MVKA+G+P+L++ GVEADDVIGTLA+QA
Sbjct: 67 KTFRDELFEDYKSHRPPMPDDLRAQIEPLHNMVKAMGFPLLVVPGVEADDVIGTLAQQAA 126
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V+IST DKDMAQLV+ I LIN NN I + +++G+ PE I+D+ +L+GD
Sbjct: 127 NEGK-PVLISTGDKDMAQLVTPDITLINTMNNTILGPDEVRAKYGIPPELIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
SDN+PGV +G KTA LL L+ + N + I G+ + R A KL+
Sbjct: 186 SSDNIPGVPGVGEKTAQALLQGLGGLDALFANLDKIAGL---SFRGAKTMAAKLEQHKDV 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L N E L L D +L ++F +Y+ +
Sbjct: 243 AYLSYKLATIKTDVELVLN----SEQLTLIEPDTDVLKEMFTRYEFKR 286
>gi|456735300|gb|EMF60061.1| DNA polymerase I [Stenotrophomonas maltophilia EPM1]
Length = 924
Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats.
Identities = 123/277 (44%), Positives = 176/277 (63%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y+A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLFNAQGEPTGALFGVVNMLRSTLKE-RPAYVAFVVDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP L Q+ + ++V+A+G IL + GVEADDVIGTLA Q + +
Sbjct: 63 FRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRVPGVEADDVIGTLALQGLAQ 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+LKV IST DKD AQLV I L+N +++ ++ +FGV ++I+D +L+GD
Sbjct: 123 -DLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDLLALMGDA 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV+K GPKTA K L +Y L+ ++ A +KG IG+NLR AL LP ++++TI+
Sbjct: 182 VDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIGENLRAALERLPLNRELVTIR 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L + P +L L+ +D L +L+ +Y +
Sbjct: 242 TDLALDAS----PTTLALREQDVPELTELYARYGFTQ 274
>gi|389794440|ref|ZP_10197592.1| DNA polymerase I [Rhodanobacter fulvus Jip2]
gi|388432246|gb|EIL89260.1| DNA polymerase I [Rhodanobacter fulvus Jip2]
Length = 914
Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats.
Identities = 124/272 (45%), Positives = 171/272 (62%), Gaps = 8/272 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR + Y+A + DA G
Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNEFGEPTGALFGVVNMLRATLRE-APDYLAFVCDAPGPT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN LY YKA R MP +L Q+ + +V A+G+PIL GVEADDVIGT+A QA
Sbjct: 63 FRNELYDQYKANRPSMPDDLRGQVQPMLAIVGALGFPILCESGVEADDVIGTIALQA-QA 121
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++V IST DKD+AQLV +++ L+N N D + ++FGV PE+I+D+ +L GD
Sbjct: 122 QGIEVEISTGDKDLAQLVGSQVTLVNTMTNTTLDTAGVTAKFGVPPERIIDFLALTGDSV 181
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTA K L +Y SL+ ++ +A+ + G IG+ LR AL LP ++++TIKT
Sbjct: 182 DNVPGVTKCGPKTAAKWLAEYGSLDGVMAHADKVGGKIGEYLRDALPQLPLSRELVTIKT 241
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
D L P L L+ +D L LF +Y
Sbjct: 242 DVPLP----LAPTDLTLRERDTDTLRALFTRY 269
>gi|386390037|ref|ZP_10074834.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus
HK411]
gi|385694079|gb|EIG24705.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus
HK411]
Length = 950
Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats.
Identities = 129/293 (44%), Positives = 182/293 (62%), Gaps = 15/293 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNQEGEPTGAMYGVVNMLKSLISQVEPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP L QI +H ++KA+G P++ ++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLISVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+N I LIN NN + DR +I ++G+ PE ++D+ +L G
Sbjct: 126 -AKEGKHVLISTGDKDMAQLVNNHIMLINTMNNTLLDREGVIEKYGIPPELVIDWLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLR-FALNWLPKLKK-- 236
D SDN+PGVK +G KTA+ LL S++ I N + + + + + FA L + +
Sbjct: 185 DSSDNIPGVKGVGEKTALALLQGIGSIKTIYENLDKVAELSFRGAKTFATKLLAEKEMAD 244
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L + L P+D L+ LF KY+ K LN +M+
Sbjct: 245 LSYLLATIKTDVELDVT----HDQLTTSPQDHDKLVALFGKYEFKKWLNEVMN 293
>gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
Length = 898
Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats.
Identities = 118/275 (42%), Positives = 175/275 (63%), Gaps = 7/275 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRA+YALP + P GA+YG + MLRKL Y Y +FDAKGK
Sbjct: 8 LILVDGSSYLYRAYYALPPLTTPAGEPTGAVYGVVSMLRKLLAEYDTAYFGVVFDAKGKT 67
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L+ +YKA R MP L +Q+ + ++V A+G + I+GVEADDVIGTLA +A
Sbjct: 68 FRDELFEAYKANRAPMPDELRVQLEPLKRIVCALGLSRIEIEGVEADDVIGTLAVRASVA 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
L+ II+T DKDMAQ+V++ + L+N + D + +FGV PE++VDY +L+GD
Sbjct: 128 -GLRTIIATGDKDMAQIVNDNVVLLNTMSGTWLDAAAVQDKFGVPPERMVDYLALVGDAV 186
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV ++GPKTA K L QY SL+ ++ + IKG +G++LR L L +++ TI+
Sbjct: 187 DNIPGVPRVGPKTAAKWLGQYGSLDALLECVDEIKGKVGESLREHLEQLALSRELATIRC 246
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLN 277
D DL + P+++ + D L +L+ ++ +
Sbjct: 247 DLDLDLD----PKAMRPRAPDVDALARLYRQHAFS 277
>gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52]
gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52]
Length = 481
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRGN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa subsp. sandyi Ann-1]
Length = 923
Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats.
Identities = 125/277 (45%), Positives = 171/277 (61%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAAGEPTGALFGVVNMLRTTLKE-RPDYAAFVIDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L YK R MP +L +Q+ + +V A+G IL I GVEADDVIGTLA AV
Sbjct: 63 FRDALDCEYKMHRPPMPDDLRMQVEPMCGIVHALGIDILCIDGVEADDVIGTLALAAVAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V IST DKD AQLV + L+N +++ +I++FGV+P++I+D+ +L+GD
Sbjct: 123 -GIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLALMGDS 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTA K L +Y SL+ +I NA+ IKG IG NLR L L + ++TIK
Sbjct: 182 VDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIGDNLRIVLPRLLLNRALITIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L K P+ L L+ +D + L + +Y +
Sbjct: 242 TDVVLEKR----PQDLALRERDTEALRDFYRRYGFTQ 274
>gi|327387327|gb|AEA72258.1| putative DNA polymerase I [uncultured bacterium]
Length = 729
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/285 (41%), Positives = 174/285 (61%), Gaps = 14/285 (4%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
+Q L+LVDGSS +YRAF+ALP + P GA+ G + MLRKL ++Y +A +FDA
Sbjct: 4 VQTPLVLVDGSSYLYRAFFALPPLTTSKGQPTGAVRGVVSMLRKLLEDYSPKQVAVVFDA 63
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GK FR+ ++ YKA R MP +L QI ++ +++A+G P++I +GVEADDVIGTLA+Q
Sbjct: 64 PGKTFRDEMFEEYKAQRPPMPDDLRAQIEPLYAIIRAMGLPLIIKEGVEADDVIGTLARQ 123
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A K V+IST DKDMAQLVS I L+N +N ++D + ++GV PE I+D +L
Sbjct: 124 AEAKGQ-HVVISTGDKDMAQLVSEHITLVNTMSNTVYDVEEVQKKYGVGPELIIDLLALQ 182
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK--- 235
GD +DN+PGV +G KTA+ LL S+E I N + + + + + L + +
Sbjct: 183 GDSADNIPGVPGVGEKTALALLQGIGSMEEIYNALDKVPELGFRGAKTMPKRLEEHREVA 242
Query: 236 ----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
K+ TIK DC+L + + + L +QP+D L + F + +
Sbjct: 243 FLSYKLATIKVDCELEETL----DDLTIQPEDTAALTEHFTELEF 283
>gi|418464049|ref|ZP_13034991.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359757390|gb|EHK91544.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 932
Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 178/286 (62%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N I+G +G+ L A +
Sbjct: 186 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLEKVAELPIRGAKKLGEKL-LAEKAMAD 244
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD +L + P L + D L+ F +Y+ +
Sbjct: 245 LSYALATIKTDVELAFS----PHELTIGDSDNDALITYFGRYEFKR 286
>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
Length = 934
Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats.
Identities = 126/285 (44%), Positives = 171/285 (60%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N +LVDGSS ++RA++A P+ N + P GA+YG I MLR L K + IA IFDAKG
Sbjct: 7 NPFILVDGSSYLFRAYHAAPNFTNGNGEPTGAVYGVINMLRSLLKQFETNRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +YP YKA R MP L QI +H+++KA+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRNDMYPEYKANRPPMPDELRCQIEPLHKLIKAMGLPLISISGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + V+IST DKDMAQLV + LIN N I ++ +FGV PE I+DY +L+GD
Sbjct: 126 SKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMGPEGVVEKFGVPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
SDN+PGV IG KTA LL L+ + N ++I + + + L + K
Sbjct: 186 ASDNIPGVPGIGDKTARALLQGVGGLDTLYANLDDIAPLGFRGSKGMAKKLEENKEGAYL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIK D +L + PE L+ Q + L+Q+F + +
Sbjct: 246 SYKLATIKLDVELEQQ----PEELVKQEPNVDELIQMFGQMNFKR 286
>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
Length = 934
Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats.
Identities = 125/289 (43%), Positives = 178/289 (61%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYSPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ SYK+ R MP +L QI +H+MV+A+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K + V+IST DKDMAQLV I LIN N I + +++GV P I+D+ +L+G
Sbjct: 126 SSK-GMPVLISTGDKDMAQLVEPNITLINTMTNTILGPEEVEAKYGVPPSLIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA+ LL SLE I N+++ + R + PK+
Sbjct: 185 DSSDNIPGVPGVGEKTALALLQGIGSLEAIY---NDLEAIAPLGFRGSKTLAPKMAENRE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L K E L + D L QLF++Y+ +
Sbjct: 242 LAFLSYQLATIKTDVELEKPC----EELKVSELDADKLHQLFSRYEFKR 286
>gi|431931900|ref|YP_007244946.1| DNA polymerase I [Thioflavicoccus mobilis 8321]
gi|431830203|gb|AGA91316.1| DNA polymerase I [Thioflavicoccus mobilis 8321]
Length = 894
Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats.
Identities = 116/244 (47%), Positives = 161/244 (65%), Gaps = 5/244 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS ++RA++ALP + N P GAL G + MLRKL +R IA +FDA GK
Sbjct: 7 LILVDGSSYLFRAYHALPKLTNSRGEPTGALVGVLNMLRKLRDEHRPERIAVVFDAPGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LYP YKA R +P +L QI + +++A+G P++++ VEADDVIGTLA +A +
Sbjct: 67 FRDDLYPKYKANRPPLPDDLREQIEPLLTVIRAMGLPLVVVPDVEADDVIGTLAMRA-AE 125
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
L ++ST DKD+AQLV +I L+N ++ DR + ++FGV+PE+IVD SL GD
Sbjct: 126 AGLDTLVSTGDKDLAQLVDERITLVNTMSDTFLDREAVKAKFGVAPERIVDLLSLTGDSV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV GPKTA K L Y L+ +I +A+ IKG G+ LR AL LP +++ I+
Sbjct: 186 DNIPGVAGCGPKTAAKWLAAYGDLDGVIAHADEIKGKAGEGLRAALEQLPLARELTKIR- 244
Query: 243 DCDL 246
CDL
Sbjct: 245 -CDL 247
>gi|387770848|ref|ZP_10127021.1| DNA-directed DNA polymerase [Pasteurella bettyae CCUG 2042]
gi|386903269|gb|EIJ68085.1| DNA-directed DNA polymerase [Pasteurella bettyae CCUG 2042]
Length = 956
Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats.
Identities = 128/287 (44%), Positives = 179/287 (62%), Gaps = 16/287 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNSLGEPTGAMYGVMNMLKSLIAQVQPTHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP L QI +H M+KA+G P+L I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDELRKQIQPLHHMIKALGIPLLSIEGVEADDVIGTLATQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ KV+IST DKDMAQLV + + LIN NN + DR +I ++G+ PE I+DY +L+G
Sbjct: 126 -SQAGKKVLISTGDKDMAQLVDDNVMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D +DN+PGV +G KTA+ LL S+ I N + + + +G+ L A
Sbjct: 185 DSADNIPGVAGVGEKTALGLLQGIGSMTEIYANLDKVADLPIRGAKKLGEKLESA-KADA 243
Query: 233 KLKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+L IL TIKTD L+ N P+ L + + L++ F +Y+ +
Sbjct: 244 ELSYILATIKTDVQLSVN----PDQLTIGKANNDQLVEYFGRYEFKR 286
>gi|416054127|ref|ZP_11579105.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|348003777|gb|EGY44333.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
Length = 977
Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats.
Identities = 125/286 (43%), Positives = 178/286 (62%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 51 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 110
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 111 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 169
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 170 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 229
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I + +G+ L A +
Sbjct: 230 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKIAELPIRGAKKLGEKL-LAEKAMAD 288
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD +L + P L + + L++ F +Y+ +
Sbjct: 289 LSYALATIKTDVELAFS----PHELTIGDSNNDALIEYFGRYEFKR 330
>gi|387891183|ref|YP_006321481.1| DNA polymerase I [Escherichia blattae DSM 4481]
gi|414594470|ref|ZP_11444106.1| DNA polymerase I [Escherichia blattae NBRC 105725]
gi|386926016|gb|AFJ48970.1| DNA polymerase I [Escherichia blattae DSM 4481]
gi|403194465|dbj|GAB81758.1| DNA polymerase I [Escherichia blattae NBRC 105725]
Length = 928
Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats.
Identities = 123/289 (42%), Positives = 176/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L + +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLSQFHPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ SYK+ R MP +L +QI +H MVKA+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFESYKSNRPPMPDDLRVQIEPLHAMVKAMGLPLLVVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN NN I +++++GV PE I+D+ +L+G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMNNTILGPEEVVAKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGV +G KTA LL L+ + + I G+ + R A KL++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYQHPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD +L E L + D L+ LF +Y+ +
Sbjct: 242 VAYLSYTLATIKTDVELELGC----EQLAITAPDSAALLGLFERYEFKR 286
>gi|389799363|ref|ZP_10202358.1| DNA polymerase I [Rhodanobacter sp. 116-2]
gi|388442780|gb|EIL98947.1| DNA polymerase I [Rhodanobacter sp. 116-2]
Length = 916
Score = 224 bits (572), Expect = 3e-56, Method: Composition-based stats.
Identities = 121/274 (44%), Positives = 173/274 (63%), Gaps = 8/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N GAL+G + MLR K + Y+A + DA G
Sbjct: 4 LILIDGSSYLYRAFHALPPLSNARGEATGALFGVVNMLRATLKA-KPDYLAFVSDAPGPT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G+PIL + GVEADDVIGTLA QA
Sbjct: 63 FRDALYAQYKANRPPMPDDLRSQVEPMLAIVAALGFPILRVGGVEADDVIGTLALQA-QA 121
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++V +ST+DKDMAQLV + + L+N +N + D ++ +FGV P +I+D+ +L GD
Sbjct: 122 QGIEVEVSTSDKDMAQLVGSHVTLVNTMSNTVLDSAGVMEKFGVMPAQIIDFLALTGDAI 181
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTA + L +Y SL+ +I +A+ I G IG++LR L LP +++ TIKT
Sbjct: 182 DNIPGVPKCGPKTAARWLGEYGSLDGVIAHADRIGGKIGESLRATLPQLPLSRQLATIKT 241
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L P L + D + L +L+ +Y+
Sbjct: 242 DVPLEFG----PTDLARREADVEQLRELYTRYEF 271
>gi|352086477|ref|ZP_08953979.1| DNA polymerase I [Rhodanobacter sp. 2APBS1]
gi|351679442|gb|EHA62583.1| DNA polymerase I [Rhodanobacter sp. 2APBS1]
Length = 916
Score = 224 bits (572), Expect = 3e-56, Method: Composition-based stats.
Identities = 121/274 (44%), Positives = 173/274 (63%), Gaps = 8/274 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N GAL+G + MLR K + Y+A + DA G
Sbjct: 4 LILIDGSSYLYRAFHALPPLSNARGEATGALFGVVNMLRATLKA-KPDYLAFVSDAPGPT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY YKA R MP +L Q+ + +V A+G+PIL + GVEADDVIGTLA QA
Sbjct: 63 FRDALYAQYKANRPPMPDDLRSQVEPMLAIVAALGFPILRVGGVEADDVIGTLALQA-QA 121
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++V +ST+DKDMAQLV + + L+N +N + D ++ +FGV P +I+D+ +L GD
Sbjct: 122 QGIEVEVSTSDKDMAQLVGSHVTLVNTMSNTVLDSAGVMEKFGVMPAQIIDFLALTGDAI 181
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PGV K GPKTA + L +Y SL+ +I +A+ I G IG++LR L LP +++ TIKT
Sbjct: 182 DNIPGVPKCGPKTAARWLGEYGSLDGVIAHADRIGGKIGESLRATLPQLPLSRQLATIKT 241
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
D L P L + D + L +L+ +Y+
Sbjct: 242 DVPLEFG----PTDLARREADVEQLRELYTRYEF 271
>gi|429732469|ref|ZP_19267079.1| DNA-directed DNA polymerase [Aggregatibacter actinomycetemcomitans
Y4]
gi|429155977|gb|EKX98619.1| DNA-directed DNA polymerase [Aggregatibacter actinomycetemcomitans
Y4]
Length = 933
Score = 224 bits (572), Expect = 3e-56, Method: Composition-based stats.
Identities = 125/286 (43%), Positives = 178/286 (62%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I + +G+ L A +
Sbjct: 186 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKIAELPIRGAKKLGEKL-LAEKAMAD 244
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD +L + P L + + L++ F +Y+ +
Sbjct: 245 LSYALATIKTDVELAFS----PHELTIGDSNNDALIEYFGRYEFKR 286
>gi|387121098|ref|YP_006286981.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
gi|385875590|gb|AFI87149.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 933
Score = 224 bits (572), Expect = 3e-56, Method: Composition-based stats.
Identities = 125/286 (43%), Positives = 178/286 (62%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I + +G+ L A +
Sbjct: 186 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKIAELPIRGAKKLGEKL-LAEKAMAD 244
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD +L + P L + + L++ F +Y+ +
Sbjct: 245 LSYALATIKTDVELAFS----PHELTIGDSNNDALIEYFGRYEFKR 286
>gi|444334877|ref|ZP_21150292.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
gi|443549787|gb|ELT58415.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
Length = 933
Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats.
Identities = 125/286 (43%), Positives = 178/286 (62%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I + +G+ L A +
Sbjct: 186 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKIAELPIRGAKKLGEKL-LAEKAMAD 244
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD +L + P L + + L++ F +Y+ +
Sbjct: 245 LSYALATIKTDVELAFS----PHELTIGDSNNDALIEYFGRYEFKR 286
>gi|416068114|ref|ZP_11582638.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|348001358|gb|EGY42106.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
Length = 933
Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats.
Identities = 125/286 (43%), Positives = 178/286 (62%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I + +G+ L A +
Sbjct: 186 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKIAELPIRGAKKLGEKL-LAEKAMAD 244
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD +L + P L + + L++ F +Y+ +
Sbjct: 245 LSYALATIKTDVELAFS----PHELTIGDSNNDALIEYFGRYEFKR 286
>gi|444347338|ref|ZP_21155248.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|443548872|gb|ELT58000.1| LOW QUALITY PROTEIN: DNA polymerase I [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 966
Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats.
Identities = 128/286 (44%), Positives = 177/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 41 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 100
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 101 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 159
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 160 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 219
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I+G +GK L A +
Sbjct: 220 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKAAELPIRGAKKLGKKL-LAEKAMAD 278
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD L + P L + D L+ F +Y+ +
Sbjct: 279 LSYALATIKTDVMLEFS----PHELAIGDSDNDALIAYFGRYEFKR 320
>gi|422020130|ref|ZP_16366670.1| DNA polymerase I [Providencia alcalifaciens Dmel2]
gi|414101725|gb|EKT63322.1| DNA polymerase I [Providencia alcalifaciens Dmel2]
Length = 934
Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats.
Identities = 125/289 (43%), Positives = 177/289 (61%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYTPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ SYK+ R MP +L QI +H+MV A+G P+L+I GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFESYKSHRPPMPDDLRAQIEPLHEMVAAMGLPLLVIPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K + V+IST DKDMAQLV I LIN N I + +++GV P I+D+ +L+G
Sbjct: 126 SSK-GMPVLISTGDKDMAQLVEPNITLINTMTNTILGPEEVEAKYGVPPSLIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA+ LL SLE+I N++ + R + PK++
Sbjct: 185 DSSDNIPGVPGVGEKTALALLQGIGSLEDIY---KNLEAIAPLGFRGSKTLAPKMEDNRE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L K E L + D L LF++Y+ +
Sbjct: 242 LAFLSYQLATIKTDVELDKPC----EELKVAELDADKLHALFSRYEFKR 286
>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
30120]
gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
30120]
Length = 934
Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats.
Identities = 125/289 (43%), Positives = 177/289 (61%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYTPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ SYK+ R MP +L QI +H+MV A+G P+L+I GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFESYKSHRPPMPDDLRAQIEPLHEMVAAMGLPLLVIPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K + V+IST DKDMAQLV I LIN N I + +++GV P I+D+ +L+G
Sbjct: 126 SSK-GMPVLISTGDKDMAQLVEPNITLINTMTNTILGPEEVEAKYGVPPSLIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA+ LL SLE+I N++ + R + PK++
Sbjct: 185 DSSDNIPGVPGVGEKTALALLQGIGSLEDIY---KNLEAIAPLGFRGSKTLAPKMEDNRE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L K E L + D L LF++Y+ +
Sbjct: 242 LAFLSYQLATIKTDVELDKPC----EELKVAELDADKLHALFSRYEFKR 286
>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
Length = 932
Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats.
Identities = 126/290 (43%), Positives = 178/290 (61%), Gaps = 18/290 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SKAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLPK 233
DN+PGV +G KTA LL S+E + N ++I + + K L +
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLIDNKDNAEM 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + PESL+ QP ++L+ QL K LN+L
Sbjct: 246 SYQLATIKLDVELEET----PESLVKTQPNTDELIKLYGQLVFKSWLNEL 291
>gi|417951299|ref|ZP_12594406.1| DNA polymerase I [Vibrio splendidus ATCC 33789]
gi|342805251|gb|EGU40529.1| DNA polymerase I [Vibrio splendidus ATCC 33789]
Length = 932
Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats.
Identities = 126/290 (43%), Positives = 178/290 (61%), Gaps = 18/290 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SKAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL S+E + N ++I + + + L K
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLIDNKDNAEM 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + PESL+ QP ++L+ QL K LN+L
Sbjct: 246 SYQLATIKLDVELEET----PESLVKTQPNTDELIKLYGQLVFKSWLNEL 291
>gi|416031112|ref|ZP_11572398.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|348002278|gb|EGY42982.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
Length = 962
Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats.
Identities = 125/286 (43%), Positives = 178/286 (62%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 36 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 95
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 96 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 154
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 155 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 214
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I + +G+ L A +
Sbjct: 215 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKIAELPIRGAKKLGEKL-LAEKAMAD 273
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD +L + P L + + L++ F +Y+ +
Sbjct: 274 LSYALATIKTDVELAFS----PHELTIGDSNNDALIEYFGRYEFKR 315
>gi|416045430|ref|ZP_11575392.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|347995330|gb|EGY36518.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
Length = 962
Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats.
Identities = 125/286 (43%), Positives = 178/286 (62%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 36 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 95
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 96 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 154
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 155 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 214
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I + +G+ L A +
Sbjct: 215 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKIAELPIRGAKKLGEKL-LAEKAMAD 273
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD +L + P L + + L++ F +Y+ +
Sbjct: 274 LSYALATIKTDVELAFS----PHELTIGDSNNDALIEYFGRYEFKR 315
>gi|410629495|ref|ZP_11340195.1| DNA polymerase I [Glaciecola arctica BSs20135]
gi|410150980|dbj|GAC17062.1| DNA polymerase I [Glaciecola arctica BSs20135]
Length = 916
Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats.
Identities = 122/284 (42%), Positives = 187/284 (65%), Gaps = 11/284 (3%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNF---PVGALYGTIKMLRKLYKNYRATYIACI 57
+ N L+LVDGSS ++RA Y +P ++ + P GA+ G + M++ L K+Y + I +
Sbjct: 8 LTNPLILVDGSSYLFRA-YHVPYLQALSTSYGQPTGAITGVLNMIKSLQKDYPSGNIVVV 66
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDAKGK FRN +Y YKA R MP +L QI +H++++A+G P+L+I+GVEADDVIGTL
Sbjct: 67 FDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPLHEIIEAMGLPLLVIEGVEADDVIGTL 126
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYF 175
A QA +K ++ +IST DKDMAQLV+ + LIN N D + +F V P++I+DY
Sbjct: 127 ANQA-SKLGMETVISTGDKDMAQLVTPHVRLINTMTNVEMDEAGVEEKFAVRPDQIIDYL 185
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L+GD DN+PGV K GPKTA K L ++ +L+ ++ NA+++KG +G++LR AL+ LP
Sbjct: 186 ALMGDKVDNIPGVDKCGPKTAAKWLAEHGTLKQVMANADSVKGKVGEHLRNALSHLPLSY 245
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
++ TI+ D DL + + I + + K L+ L +++L +L
Sbjct: 246 ELATIRLDVDLPQKVQDIKATEVNFEK----LIALSTQFELKRL 285
>gi|440233105|ref|YP_007346898.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Serratia marcescens FGI94]
gi|440054810|gb|AGB84713.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Serratia marcescens FGI94]
Length = 932
Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats.
Identities = 128/289 (44%), Positives = 176/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L + Y T++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLQQYAPTHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L+ GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLVTPGVEADDVIGTLALQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N ++I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYANLDSIATL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L VS E +L P D L QLF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---VSCSELNVL-PPDVDQLHQLFKQYEFKR 286
>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
gi|444345405|ref|ZP_21153423.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|443542932|gb|ELT53212.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
Length = 933
Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats.
Identities = 128/286 (44%), Positives = 177/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I+G +GK L A +
Sbjct: 186 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGKKL-LAEKAMAD 244
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD L + P L + D L+ F +Y+ +
Sbjct: 245 LSYALATIKTDVMLEFS----PHELAIGDSDNDALIAYFGRYEFKR 286
>gi|416052203|ref|ZP_11578105.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347992293|gb|EGY33702.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 933
Score = 223 bits (569), Expect = 5e-56, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 177/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N I+G +G+ L A +
Sbjct: 186 SSDNIPGVAGVGEKTALGLLQGIGSMAKIYANLEKVAELPIRGAKKLGEKL-LAEKAMAD 244
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD L + P L + D L+ F +Y+ +
Sbjct: 245 LSYALATIKTDVALAFS----PHELTIGDSDNDALITYFGRYEFKR 286
>gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
Length = 927
Score = 223 bits (569), Expect = 5e-56, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 173/286 (60%), Gaps = 10/286 (3%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + MLR + ++Y + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRHYASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H ++KA+G P++ + GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLICVPGVEADDVIGTLATQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ + V+IST DKDMAQLV I LIN N + DR ++ +FG+ PE I+DY +L+GD
Sbjct: 126 SAEGIPVLISTGDKDMAQLVDENITLINTMTNTVMDREGVVEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + +N ++I + + + L + K
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGGLEQLYDNLDSIAALGFRGSKTMAKKLEENKDDAML 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
++ TIK D L +I S+ +S Q KL QL K LN+L
Sbjct: 246 SYQLATIKLDVKLDHDIPSLSKSAPDQDSLIKLYGQLVFKSWLNEL 291
>gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021]
gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
Length = 635
Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/292 (42%), Positives = 183/292 (62%), Gaps = 15/292 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML++L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKRLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N I+G +G+ L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKPNADL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L N+ + + L+L + L++ F +Y+ + LN +M+
Sbjct: 246 SYTLATIKTDVEL--NVTT--DQLLLGESQKDQLIEYFARYEFKRWLNEVMN 293
>gi|348590443|ref|YP_004874905.1| DNA polymerase I [Taylorella asinigenitalis MCE3]
gi|347974347|gb|AEP36882.1| DNA polymerase I [Taylorella asinigenitalis MCE3]
Length = 888
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 174/255 (68%), Gaps = 3/255 (1%)
Query: 21 LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKM 80
+P++R+ D P GA++G I M+++ + +IAC+FDA GK FR+ LY YKA R M
Sbjct: 1 MPNLRSPDGEPSGAIFGLINMMKRTQIITKPDFIACVFDAPGKTFRHDLYKEYKAHRPAM 60
Query: 81 PYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQ 140
P +L QI +HQ + A+G I++ GVEADD+I TLA A TK+ +K +I+T DKD+AQ
Sbjct: 61 PDDLRDQIESVHQAIDALGCNIIMQSGVEADDIIATLADYA-TKNQIKTVIATGDKDIAQ 119
Query: 141 LVSNKIALINN-NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKL 199
LV++ + +I +I DR ++ ++GV PE+I+DY L+GD SDN+PGV K+GPKTA K
Sbjct: 120 LVNSNVEIITGKEEILDRNGVLEKYGVYPEQIIDYLMLMGDSSDNIPGVDKVGPKTASKW 179
Query: 200 LNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLIL 259
L +Y +LEN++ N +++KG + +NL+ A +K++TIK DCD+++ + S+ + L+
Sbjct: 180 LQEYGTLENLLQNIDSLKGKVAQNLKEASPQFELTRKLVTIKNDCDISQWVSSM-DDLLP 238
Query: 260 QPKDEKLLMQLFNKY 274
+ KD +L +++ +Y
Sbjct: 239 KDKDYAVLKEIYTQY 253
>gi|417345051|ref|ZP_12125266.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|357953429|gb|EHJ79973.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
Length = 527
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7]
gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7]
Length = 860
Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats.
Identities = 104/230 (45%), Positives = 158/230 (68%), Gaps = 4/230 (1%)
Query: 47 KNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIK 106
++Y+A Y AC+FDA+GK FR+ +YP YK R MP L Q IH+ V A+GWP+L +
Sbjct: 2 QDYKADYAACVFDARGKTFRDDIYPLYKGNRPSMPEELAAQTEPIHRAVAALGWPVLAVP 61
Query: 107 GVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRF 164
GVEADD+IGTLA++A + + ++ST DKD+AQLV+ + L+N + + D +I +F
Sbjct: 62 GVEADDIIGTLARRA-AQEGVHTVVSTGDKDLAQLVNEHVELVNTMSGERQDIDGVIKKF 120
Query: 165 GVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNL 224
GV+P++IVD+ L GD DN+PGV+K+GPKTA K L QY +++ ++ NA+++KGV G NL
Sbjct: 121 GVTPDQIVDFLMLTGDTVDNIPGVEKVGPKTAAKWLAQYKTIDALVENADSVKGVAGNNL 180
Query: 225 RFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
R A+ ++++TIKTDCD+ + + S +L P D +L+ L+N+Y
Sbjct: 181 RAAIPNFDMTRQLVTIKTDCDIPE-LASGLSALTPTPVDRDVLVNLYNEY 229
>gi|417437255|ref|ZP_12161758.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353613056|gb|EHC65251.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
Length = 535
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 245 LSYKLATIKTDVELELTC----EQLEVQQPIADELLGLFKKYEFKR 286
>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
Length = 934
Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNASGEPTGAMYGVLNMLRSLLLQYHPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + +FGV PE I+D+ +L+G
Sbjct: 126 -EKAGYSVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVREKFGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYSNLDKIASLTFRGAKTLSAKLEQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L VS E LI+ D L LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELE---VSCGE-LIVSTPDIDQLHTLFARYEFKR 286
>gi|365966721|ref|YP_004948283.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans ANH9381]
gi|365745634|gb|AEW76539.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans ANH9381]
Length = 933
Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats.
Identities = 128/286 (44%), Positives = 177/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIKKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I+G +GK L A +
Sbjct: 186 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKAAELPIRGAKKLGKKL-LAEKAMAD 244
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD L + P L + D L+ F +Y+ +
Sbjct: 245 LSYALATIKTDVMLEFS----PHELAIGDSDNDALIAYFGRYEFKR 286
>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 933
Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNRAGEPTGAMYGVLNMLRSLMLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MV+A+G P+L + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLREQIEPLHKMVQAVGLPLLAVSGVEADDVIGTLA-QA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 125 AEKAGRHVLISTGDKDMAQLVTPNITLINTMNNTILGPQEVCDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PGV +G KTA LL SL+ I ++ + + + +G L +
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGIGSLKQIYSDLDKVATLSFRGAKTMGAKLELNKDQAD 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD +L + L L+P D L +LF++Y+ +
Sbjct: 245 LSYLLATIKTDVELDVTC----DDLKLKPMDTAQLHELFSRYEFKR 286
>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
gi|423211776|ref|ZP_17198309.1| DNA polymerase I [Aeromonas veronii AER397]
gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
gi|404612997|gb|EKB10041.1| DNA polymerase I [Aeromonas veronii AER397]
Length = 921
Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats.
Identities = 130/291 (44%), Positives = 186/291 (63%), Gaps = 22/291 (7%)
Query: 3 NTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
N L+LVDGSS +YRAF+A D+R P GA+ M+R L K Y ++A +FDA
Sbjct: 5 NPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSLRKQYPDCHVAVVFDA 64
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKATR MP +L Q+ IHQM+KA+G+P L+++GVEADDVIGTLA+Q
Sbjct: 65 KGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADDVIGTLARQ 124
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L V+IST DKDMAQLVS+ + LI+ K DR +I +FGV PE I+DY +L+
Sbjct: 125 A-TEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK--- 235
GD DN+PG+ +G KTA+ LL S+++I A N+ V R + + K +
Sbjct: 184 GDKVDNIPGMTGVGEKTALALLQGIGSIDDI---AANLDKVAALGFRGSKAFADKFREQE 240
Query: 236 -------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
++ TIKTD +L +++ E L+L+P D++ L+ ++ +Y+L L
Sbjct: 241 EQVRLSYRLATIKTDVELEQSL----EELLLKPVDKESLLAVYREYELRNL 287
>gi|423204492|ref|ZP_17191048.1| DNA polymerase I [Aeromonas veronii AMC34]
gi|404626846|gb|EKB23654.1| DNA polymerase I [Aeromonas veronii AMC34]
Length = 921
Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats.
Identities = 130/291 (44%), Positives = 185/291 (63%), Gaps = 22/291 (7%)
Query: 3 NTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
N L+LVDGSS +YRAF+A D+R P GA+ M+R L K Y ++A +FDA
Sbjct: 5 NPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSLRKQYPDCHVAVVFDA 64
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKATR MP +L Q+ IHQM+KA+G+P L+++GVEADDVIGTLA+Q
Sbjct: 65 KGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADDVIGTLARQ 124
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L V+IST DKDMAQLVS+ + LI+ K DR +I +FGV PE I+DY +L+
Sbjct: 125 A-TEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK--- 235
GD DN+PG+ +G KTA+ LL S++ I A N+ V R + + K +
Sbjct: 184 GDKVDNIPGMTGVGEKTALALLQGIGSIDEI---AANLDKVAALGFRGSKTFADKFREQE 240
Query: 236 -------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
++ TIKTD +L +++ E L+L+P D++ L+ ++ +Y+L L
Sbjct: 241 EQVRLSYRLATIKTDVELEQSL----EELLLKPVDKESLLAVYREYELRNL 287
>gi|416074754|ref|ZP_11584683.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|444337963|ref|ZP_21151873.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|348006757|gb|EGY47152.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|443545907|gb|ELT55637.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
Length = 933
Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats.
Identities = 128/286 (44%), Positives = 177/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I+G +GK L A +
Sbjct: 186 SSDNIPGVAGVGKKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGKKL-LAEKAMAD 244
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD L + P L + D L+ F +Y+ +
Sbjct: 245 LSYALATIKTDVMLEFS----PHELSIGDSDNDALIAYFGRYEFKR 286
>gi|422908651|ref|ZP_16943330.1| DNA polymerase I [Vibrio cholerae HE-09]
gi|341639314|gb|EGS63934.1| DNA polymerase I [Vibrio cholerae HE-09]
Length = 934
Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEQS----PQTLLKQTPDRDALMSLYGK 281
>gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031]
gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031]
Length = 935
Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats.
Identities = 124/295 (42%), Positives = 184/295 (62%), Gaps = 21/295 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLDKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALALLQGIGSMTEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
KT+ DL+ + +I + L+L + L++ F++Y+ + LN +M+
Sbjct: 239 EKTNADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFSRYEFKRWLNEVMN 293
>gi|365834656|ref|ZP_09376100.1| DNA-directed DNA polymerase [Hafnia alvei ATCC 51873]
gi|364568931|gb|EHM46565.1| DNA-directed DNA polymerase [Hafnia alvei ATCC 51873]
Length = 933
Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNRAGEPTGAMYGVLNMLRSLMLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MV+A+G P+L + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLREQIEPLHKMVQAVGLPLLAVSGVEADDVIGTLA-QA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 125 AEKAGRHVLISTGDKDMAQLVTPNITLINTMNNTILGPQEVCDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PGV +G KTA LL SL+ I ++ + + + +G L +
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGIGSLKQIYSDLDKVATLSFRGAKTMGAKLELNKDQAD 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD +L + L L+P D L +LF++Y+ +
Sbjct: 245 LSYLLATIKTDVELDVTC----DDLKLKPMDTAQLHELFSRYEFKR 286
>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
Length = 931
Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats.
Identities = 120/280 (42%), Positives = 174/280 (62%), Gaps = 9/280 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +HQ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV +G KTA LL L + ++ ++I + + + KK++
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSK------TMAKKLVD 238
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
K + L+ + +I + LQ E LL NK +L KL
Sbjct: 239 NKDNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKL 278
>gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341]
gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341]
Length = 938
Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats.
Identities = 119/283 (42%), Positives = 173/283 (61%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + IA IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMVRSMMRQFASDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP +L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL L ++ N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLNDLYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 ATLSYQLATIKCDVELAES----PQTLLKQTPDRDALMALYGK 281
>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
Length = 931
Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats.
Identities = 120/280 (42%), Positives = 174/280 (62%), Gaps = 9/280 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +HQ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV +G KTA LL L + ++ ++I + + + KK++
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSK------TMAKKLVD 238
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
K + L+ + +I + LQ E LL NK +L KL
Sbjct: 239 NKDNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKL 278
>gi|429887035|ref|ZP_19368565.1| DNA polymerase I [Vibrio cholerae PS15]
gi|429225982|gb|EKY32161.1| DNA polymerase I [Vibrio cholerae PS15]
Length = 934
Score = 223 bits (567), Expect = 8e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|421348985|ref|ZP_15799355.1| DNA polymerase I [Vibrio cholerae HE-25]
gi|395956834|gb|EJH67424.1| DNA polymerase I [Vibrio cholerae HE-25]
Length = 934
Score = 223 bits (567), Expect = 8e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|421352875|ref|ZP_15803214.1| DNA polymerase I [Vibrio cholerae HE-45]
gi|395956671|gb|EJH67264.1| DNA polymerase I [Vibrio cholerae HE-45]
Length = 934
Score = 223 bits (567), Expect = 8e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|419835047|ref|ZP_14358496.1| DNA polymerase I [Vibrio cholerae HC-46B1]
gi|421341636|ref|ZP_15792046.1| DNA polymerase I [Vibrio cholerae HC-43B1]
gi|423733392|ref|ZP_17706626.1| DNA polymerase I family protein [Vibrio cholerae HC-41B1]
gi|424007690|ref|ZP_17750649.1| DNA polymerase I [Vibrio cholerae HC-44C1]
gi|395947220|gb|EJH57876.1| DNA polymerase I [Vibrio cholerae HC-43B1]
gi|408632497|gb|EKL04948.1| DNA polymerase I family protein [Vibrio cholerae HC-41B1]
gi|408859489|gb|EKL99147.1| DNA polymerase I [Vibrio cholerae HC-46B1]
gi|408868117|gb|EKM07462.1| DNA polymerase I [Vibrio cholerae HC-44C1]
Length = 934
Score = 223 bits (567), Expect = 8e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|417822273|ref|ZP_12468874.1| DNA polymerase I [Vibrio cholerae HE48]
gi|422305523|ref|ZP_16392724.1| DNA polymerase I family protein [Vibrio cholerae CP1035(8)]
gi|340049709|gb|EGR10622.1| DNA polymerase I [Vibrio cholerae HE48]
gi|408628621|gb|EKL01352.1| DNA polymerase I family protein [Vibrio cholerae CP1035(8)]
Length = 934
Score = 223 bits (567), Expect = 8e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
Length = 934
Score = 223 bits (567), Expect = 8e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69]
gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75]
gi|417758306|ref|ZP_12406365.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2B]
gi|418999442|ref|ZP_13547016.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1A]
gi|419004684|ref|ZP_13552190.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1B]
gi|419010365|ref|ZP_13557771.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1C]
gi|419016069|ref|ZP_13563401.1| DNA polymerase I [Escherichia coli DEC1D]
gi|419020994|ref|ZP_13568289.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1E]
gi|419026447|ref|ZP_13573657.1| DNA polymerase I [Escherichia coli DEC2A]
gi|419031598|ref|ZP_13578735.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2C]
gi|419037245|ref|ZP_13584314.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2D]
gi|419042293|ref|ZP_13589306.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2E]
gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5'
exonuclease [Escherichia coli O127:H6 str. E2348/69]
gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75]
gi|377838663|gb|EHU03773.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1C]
gi|377838814|gb|EHU03923.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1A]
gi|377841511|gb|EHU06576.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1B]
gi|377852587|gb|EHU17503.1| DNA polymerase I [Escherichia coli DEC1D]
gi|377855678|gb|EHU20543.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC1E]
gi|377857526|gb|EHU22375.1| DNA polymerase I [Escherichia coli DEC2A]
gi|377870015|gb|EHU34709.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2B]
gi|377871995|gb|EHU36649.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2C]
gi|377873573|gb|EHU38206.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2D]
gi|377885554|gb|EHU50048.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC2E]
Length = 928
Score = 223 bits (567), Expect = 8e-56, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|417542920|ref|ZP_12194240.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|353657735|gb|EHC98100.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
Length = 536
Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 245 LSYKLATIKTDVELELTC----EQLEVQQPIADELLGLFKKYEFKR 286
>gi|417387060|ref|ZP_12151594.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|353601507|gb|EHC57124.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
Length = 527
Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|417369471|ref|ZP_12140652.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|353584182|gb|EHC44363.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
Length = 527
Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972]
gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
gi|386621499|ref|YP_006141079.1| DNA polymerase I [Escherichia coli NA114]
gi|386631826|ref|YP_006151546.1| exonuclease IX [Escherichia coli str. 'clone D i2']
gi|386636746|ref|YP_006156465.1| exonuclease IX [Escherichia coli str. 'clone D i14']
gi|386641513|ref|YP_006108311.1| DNA polymerase I [Escherichia coli ABU 83972]
gi|417287474|ref|ZP_12074760.1| DNA-directed DNA polymerase [Escherichia coli TW07793]
gi|422364493|ref|ZP_16445009.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
gi|432414174|ref|ZP_19656824.1| DNA polymerase I [Escherichia coli KTE39]
gi|432424282|ref|ZP_19666817.1| DNA polymerase I [Escherichia coli KTE178]
gi|432434136|ref|ZP_19676555.1| DNA polymerase I [Escherichia coli KTE187]
gi|432438837|ref|ZP_19681212.1| DNA polymerase I [Escherichia coli KTE188]
gi|432459022|ref|ZP_19701194.1| DNA polymerase I [Escherichia coli KTE201]
gi|432493131|ref|ZP_19734959.1| DNA polymerase I [Escherichia coli KTE214]
gi|432506772|ref|ZP_19748488.1| DNA polymerase I [Escherichia coli KTE220]
gi|432526353|ref|ZP_19763463.1| DNA polymerase I [Escherichia coli KTE230]
gi|432561148|ref|ZP_19797798.1| DNA polymerase I [Escherichia coli KTE49]
gi|432571154|ref|ZP_19807657.1| DNA polymerase I [Escherichia coli KTE53]
gi|432595133|ref|ZP_19831441.1| DNA polymerase I [Escherichia coli KTE60]
gi|432605317|ref|ZP_19841525.1| DNA polymerase I [Escherichia coli KTE67]
gi|432653533|ref|ZP_19889269.1| DNA polymerase I [Escherichia coli KTE87]
gi|432682655|ref|ZP_19918005.1| DNA polymerase I [Escherichia coli KTE143]
gi|432708272|ref|ZP_19943346.1| DNA polymerase I [Escherichia coli KTE6]
gi|432781201|ref|ZP_20015410.1| DNA polymerase I [Escherichia coli KTE63]
gi|432799771|ref|ZP_20033771.1| DNA polymerase I [Escherichia coli KTE84]
gi|432847117|ref|ZP_20079611.1| DNA polymerase I [Escherichia coli KTE141]
gi|432891500|ref|ZP_20104191.1| DNA polymerase I [Escherichia coli KTE165]
gi|432976103|ref|ZP_20164934.1| DNA polymerase I [Escherichia coli KTE209]
gi|432993083|ref|ZP_20181713.1| DNA polymerase I [Escherichia coli KTE218]
gi|433002280|ref|ZP_20190795.1| DNA polymerase I [Escherichia coli KTE223]
gi|433060405|ref|ZP_20247433.1| DNA polymerase I [Escherichia coli KTE124]
gi|433089610|ref|ZP_20275964.1| DNA polymerase I [Escherichia coli KTE137]
gi|433117813|ref|ZP_20303589.1| DNA polymerase I [Escherichia coli KTE153]
gi|433127515|ref|ZP_20313052.1| DNA polymerase I [Escherichia coli KTE160]
gi|433141588|ref|ZP_20326822.1| DNA polymerase I [Escherichia coli KTE167]
gi|433151540|ref|ZP_20336533.1| DNA polymerase I [Escherichia coli KTE174]
gi|433210033|ref|ZP_20393692.1| DNA polymerase I [Escherichia coli KTE97]
gi|433214912|ref|ZP_20398482.1| DNA polymerase I [Escherichia coli KTE99]
gi|442607185|ref|ZP_21021974.1| DNA polymerase I [Escherichia coli Nissle 1917]
gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972]
gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972]
gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
gi|333972000|gb|AEG38805.1| DNA polymerase I [Escherichia coli NA114]
gi|355422725|gb|AER86922.1| exonuclease IX [Escherichia coli str. 'clone D i2']
gi|355427645|gb|AER91841.1| exonuclease IX [Escherichia coli str. 'clone D i14']
gi|386248259|gb|EII94431.1| DNA-directed DNA polymerase [Escherichia coli TW07793]
gi|430932134|gb|ELC52567.1| DNA polymerase I [Escherichia coli KTE39]
gi|430941335|gb|ELC61488.1| DNA polymerase I [Escherichia coli KTE178]
gi|430949673|gb|ELC69100.1| DNA polymerase I [Escherichia coli KTE187]
gi|430959557|gb|ELC77874.1| DNA polymerase I [Escherichia coli KTE188]
gi|430978834|gb|ELC95628.1| DNA polymerase I [Escherichia coli KTE201]
gi|431030755|gb|ELD43761.1| DNA polymerase I [Escherichia coli KTE214]
gi|431034507|gb|ELD46438.1| DNA polymerase I [Escherichia coli KTE220]
gi|431047137|gb|ELD57143.1| DNA polymerase I [Escherichia coli KTE230]
gi|431088066|gb|ELD93971.1| DNA polymerase I [Escherichia coli KTE49]
gi|431096778|gb|ELE02238.1| DNA polymerase I [Escherichia coli KTE53]
gi|431125390|gb|ELE27805.1| DNA polymerase I [Escherichia coli KTE60]
gi|431143842|gb|ELE45556.1| DNA polymerase I [Escherichia coli KTE67]
gi|431186650|gb|ELE86190.1| DNA polymerase I [Escherichia coli KTE87]
gi|431216927|gb|ELF14519.1| DNA polymerase I [Escherichia coli KTE143]
gi|431254716|gb|ELF47984.1| DNA polymerase I [Escherichia coli KTE6]
gi|431333918|gb|ELG21094.1| DNA polymerase I [Escherichia coli KTE63]
gi|431353976|gb|ELG40727.1| DNA polymerase I [Escherichia coli KTE84]
gi|431391752|gb|ELG75358.1| DNA polymerase I [Escherichia coli KTE141]
gi|431429602|gb|ELH11527.1| DNA polymerase I [Escherichia coli KTE165]
gi|431485237|gb|ELH64901.1| DNA polymerase I [Escherichia coli KTE209]
gi|431503843|gb|ELH82577.1| DNA polymerase I [Escherichia coli KTE223]
gi|431513852|gb|ELH91931.1| DNA polymerase I [Escherichia coli KTE218]
gi|431565348|gb|ELI38481.1| DNA polymerase I [Escherichia coli KTE124]
gi|431600133|gb|ELI69809.1| DNA polymerase I [Escherichia coli KTE137]
gi|431630020|gb|ELI98362.1| DNA polymerase I [Escherichia coli KTE153]
gi|431639519|gb|ELJ07375.1| DNA polymerase I [Escherichia coli KTE160]
gi|431655070|gb|ELJ22111.1| DNA polymerase I [Escherichia coli KTE167]
gi|431666577|gb|ELJ33205.1| DNA polymerase I [Escherichia coli KTE174]
gi|431727834|gb|ELJ91569.1| DNA polymerase I [Escherichia coli KTE97]
gi|431731156|gb|ELJ94666.1| DNA polymerase I [Escherichia coli KTE99]
gi|441711644|emb|CCQ07951.1| DNA polymerase I [Escherichia coli Nissle 1917]
Length = 928
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a]
gi|432443411|ref|ZP_19685741.1| DNA polymerase I [Escherichia coli KTE189]
gi|432448554|ref|ZP_19690848.1| DNA polymerase I [Escherichia coli KTE191]
gi|433016201|ref|ZP_20204523.1| DNA polymerase I [Escherichia coli KTE104]
gi|433025790|ref|ZP_20213753.1| DNA polymerase I [Escherichia coli KTE106]
gi|433326840|ref|ZP_20403528.1| DNA polymerase I [Escherichia coli J96]
gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli ED1a]
gi|430961855|gb|ELC79854.1| DNA polymerase I [Escherichia coli KTE189]
gi|430970239|gb|ELC87311.1| DNA polymerase I [Escherichia coli KTE191]
gi|431525713|gb|ELI02494.1| DNA polymerase I [Escherichia coli KTE104]
gi|431529957|gb|ELI06647.1| DNA polymerase I [Escherichia coli KTE106]
gi|432345234|gb|ELL39752.1| DNA polymerase I [Escherichia coli J96]
Length = 928
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39]
gi|386626765|ref|YP_006146493.1| fused DNA polymerase I 5'-3' polymerase/3'-5' exonuclease/5'-3'
exonuclease [Escherichia coli O7:K1 str. CE10]
gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli IAI39]
gi|349740501|gb|AEQ15207.1| fused DNA polymerase I 5'-3' polymerase/3'-5' exonuclease/5'-3'
exonuclease [Escherichia coli O7:K1 str. CE10]
Length = 928
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536]
gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11]
gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
gi|419911928|ref|ZP_14430389.1| DNA polymerase I [Escherichia coli KD1]
gi|422376112|ref|ZP_16456365.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
gi|422381926|ref|ZP_16462089.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
gi|432395267|ref|ZP_19638064.1| DNA polymerase I [Escherichia coli KTE25]
gi|432408949|ref|ZP_19651649.1| DNA polymerase I [Escherichia coli KTE28]
gi|432468218|ref|ZP_19710293.1| DNA polymerase I [Escherichia coli KTE205]
gi|432473232|ref|ZP_19715266.1| DNA polymerase I [Escherichia coli KTE206]
gi|432556112|ref|ZP_19792825.1| DNA polymerase I [Escherichia coli KTE47]
gi|432585407|ref|ZP_19821796.1| DNA polymerase I [Escherichia coli KTE57]
gi|432715737|ref|ZP_19950760.1| DNA polymerase I [Escherichia coli KTE8]
gi|432725345|ref|ZP_19960257.1| DNA polymerase I [Escherichia coli KTE17]
gi|432729953|ref|ZP_19964824.1| DNA polymerase I [Escherichia coli KTE18]
gi|432734632|ref|ZP_19969452.1| DNA polymerase I [Escherichia coli KTE45]
gi|432743642|ref|ZP_19978354.1| DNA polymerase I [Escherichia coli KTE23]
gi|432761717|ref|ZP_19996203.1| DNA polymerase I [Escherichia coli KTE46]
gi|432988374|ref|ZP_20177051.1| DNA polymerase I [Escherichia coli KTE217]
gi|433075166|ref|ZP_20261797.1| DNA polymerase I [Escherichia coli KTE129]
gi|433080091|ref|ZP_20266604.1| DNA polymerase I [Escherichia coli KTE131]
gi|433113155|ref|ZP_20299000.1| DNA polymerase I [Escherichia coli KTE150]
gi|433122497|ref|ZP_20308149.1| DNA polymerase I [Escherichia coli KTE157]
gi|433185623|ref|ZP_20369853.1| DNA polymerase I [Escherichia coli KTE85]
gi|433200644|ref|ZP_20384523.1| DNA polymerase I [Escherichia coli KTE94]
gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536]
gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11]
gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
gi|388392439|gb|EIL53857.1| DNA polymerase I [Escherichia coli KD1]
gi|430920118|gb|ELC41028.1| DNA polymerase I [Escherichia coli KTE25]
gi|430925757|gb|ELC46359.1| DNA polymerase I [Escherichia coli KTE28]
gi|430990375|gb|ELD06810.1| DNA polymerase I [Escherichia coli KTE205]
gi|430994985|gb|ELD11293.1| DNA polymerase I [Escherichia coli KTE206]
gi|431080073|gb|ELD86879.1| DNA polymerase I [Escherichia coli KTE47]
gi|431114039|gb|ELE17593.1| DNA polymerase I [Escherichia coli KTE57]
gi|431251139|gb|ELF45157.1| DNA polymerase I [Escherichia coli KTE8]
gi|431261652|gb|ELF53677.1| DNA polymerase I [Escherichia coli KTE17]
gi|431270346|gb|ELF61512.1| DNA polymerase I [Escherichia coli KTE45]
gi|431270396|gb|ELF61561.1| DNA polymerase I [Escherichia coli KTE18]
gi|431280671|gb|ELF71586.1| DNA polymerase I [Escherichia coli KTE23]
gi|431304983|gb|ELF93506.1| DNA polymerase I [Escherichia coli KTE46]
gi|431501567|gb|ELH80546.1| DNA polymerase I [Escherichia coli KTE217]
gi|431582029|gb|ELI54465.1| DNA polymerase I [Escherichia coli KTE129]
gi|431592627|gb|ELI63197.1| DNA polymerase I [Escherichia coli KTE131]
gi|431624098|gb|ELI92720.1| DNA polymerase I [Escherichia coli KTE150]
gi|431638293|gb|ELJ06331.1| DNA polymerase I [Escherichia coli KTE157]
gi|431701092|gb|ELJ66013.1| DNA polymerase I [Escherichia coli KTE85]
gi|431716480|gb|ELJ80592.1| DNA polymerase I [Escherichia coli KTE94]
Length = 928
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
gi|379740006|ref|YP_005331975.1| DNA polymerase I [Vibrio cholerae IEC224]
gi|417811189|ref|ZP_12457856.1| DNA polymerase I [Vibrio cholerae HC-49A2]
gi|418330820|ref|ZP_12941782.1| DNA polymerase I [Vibrio cholerae HC-06A1]
gi|418335786|ref|ZP_12944690.1| DNA polymerase I [Vibrio cholerae HC-23A1]
gi|418342353|ref|ZP_12949169.1| DNA polymerase I [Vibrio cholerae HC-28A1]
gi|418347529|ref|ZP_12952270.1| DNA polymerase I [Vibrio cholerae HC-43A1]
gi|418353036|ref|ZP_12955764.1| DNA polymerase I [Vibrio cholerae HC-61A1]
gi|419824579|ref|ZP_14348091.1| DNA polymerase I family protein [Vibrio cholerae CP1033(6)]
gi|421315395|ref|ZP_15765970.1| DNA polymerase I [Vibrio cholerae CP1032(5)]
gi|421318906|ref|ZP_15769469.1| DNA polymerase I [Vibrio cholerae CP1038(11)]
gi|421322961|ref|ZP_15773495.1| DNA polymerase I [Vibrio cholerae CP1041(14)]
gi|421326412|ref|ZP_15776932.1| DNA polymerase I [Vibrio cholerae CP1042(15)]
gi|421330338|ref|ZP_15780825.1| DNA polymerase I [Vibrio cholerae CP1046(19)]
gi|421337492|ref|ZP_15787951.1| DNA polymerase I [Vibrio cholerae CP1048(21)]
gi|421337845|ref|ZP_15788288.1| DNA polymerase I [Vibrio cholerae HC-20A2]
gi|422890139|ref|ZP_16932588.1| DNA polymerase I [Vibrio cholerae HC-40A1]
gi|422900925|ref|ZP_16936338.1| DNA polymerase I [Vibrio cholerae HC-48A1]
gi|422905109|ref|ZP_16939986.1| DNA polymerase I [Vibrio cholerae HC-70A1]
gi|422911857|ref|ZP_16946397.1| DNA polymerase I [Vibrio cholerae HFU-02]
gi|422924322|ref|ZP_16957383.1| DNA polymerase I [Vibrio cholerae HC-38A1]
gi|423143384|ref|ZP_17131013.1| DNA polymerase I [Vibrio cholerae HC-19A1]
gi|423148366|ref|ZP_17135738.1| DNA polymerase I [Vibrio cholerae HC-21A1]
gi|423152152|ref|ZP_17139377.1| DNA polymerase I [Vibrio cholerae HC-22A1]
gi|423154945|ref|ZP_17142091.1| DNA polymerase I [Vibrio cholerae HC-32A1]
gi|423158809|ref|ZP_17145790.1| DNA polymerase I [Vibrio cholerae HC-33A2]
gi|423163471|ref|ZP_17150282.1| DNA polymerase I [Vibrio cholerae HC-48B2]
gi|423729483|ref|ZP_17702821.1| DNA polymerase I family protein [Vibrio cholerae HC-17A1]
gi|423745263|ref|ZP_17710999.1| DNA polymerase I family protein [Vibrio cholerae HC-50A2]
gi|423889538|ref|ZP_17725038.1| DNA polymerase I family protein [Vibrio cholerae HC-62A1]
gi|423922951|ref|ZP_17729650.1| DNA polymerase I family protein [Vibrio cholerae HC-77A1]
gi|424000656|ref|ZP_17743760.1| DNA polymerase I family protein [Vibrio cholerae HC-17A2]
gi|424004819|ref|ZP_17747818.1| DNA polymerase I family protein [Vibrio cholerae HC-37A1]
gi|424022616|ref|ZP_17762293.1| DNA polymerase I family protein [Vibrio cholerae HC-62B1]
gi|424025635|ref|ZP_17765266.1| DNA polymerase I family protein [Vibrio cholerae HC-69A1]
gi|424585007|ref|ZP_18024615.1| DNA polymerase I [Vibrio cholerae CP1030(3)]
gi|424589380|ref|ZP_18028839.1| DNA polymerase I [Vibrio cholerae CP1037(10)]
gi|424593634|ref|ZP_18032989.1| DNA polymerase I [Vibrio cholerae CP1040(13)]
gi|424597563|ref|ZP_18036776.1| DNA polymerase I [Vibrio Cholerae CP1044(17)]
gi|424600338|ref|ZP_18039508.1| DNA polymerase I [Vibrio cholerae CP1047(20)]
gi|424605240|ref|ZP_18044220.1| DNA polymerase I [Vibrio cholerae CP1050(23)]
gi|424608963|ref|ZP_18047836.1| DNA polymerase I [Vibrio cholerae HC-39A1]
gi|424611875|ref|ZP_18050697.1| DNA polymerase I [Vibrio cholerae HC-41A1]
gi|424615760|ref|ZP_18054466.1| DNA polymerase I [Vibrio cholerae HC-42A1]
gi|424620514|ref|ZP_18059054.1| DNA polymerase I [Vibrio cholerae HC-47A1]
gi|424643330|ref|ZP_18081100.1| DNA polymerase I [Vibrio cholerae HC-56A2]
gi|424651261|ref|ZP_18088798.1| DNA polymerase I [Vibrio cholerae HC-57A2]
gi|443502166|ref|ZP_21069170.1| DNA polymerase I [Vibrio cholerae HC-64A1]
gi|443506065|ref|ZP_21072876.1| DNA polymerase I [Vibrio cholerae HC-65A1]
gi|443509901|ref|ZP_21076587.1| DNA polymerase I [Vibrio cholerae HC-67A1]
gi|443513744|ref|ZP_21080301.1| DNA polymerase I [Vibrio cholerae HC-68A1]
gi|443517548|ref|ZP_21083987.1| DNA polymerase I [Vibrio cholerae HC-71A1]
gi|443522136|ref|ZP_21088398.1| DNA polymerase I [Vibrio cholerae HC-72A2]
gi|443529070|ref|ZP_21095092.1| DNA polymerase I [Vibrio cholerae HC-7A1]
gi|443533807|ref|ZP_21099743.1| DNA polymerase I [Vibrio cholerae HC-80A1]
gi|443536629|ref|ZP_21102489.1| DNA polymerase I [Vibrio cholerae HC-81A1]
gi|449054779|ref|ZP_21733447.1| DNA polymerase I [Vibrio cholerae O1 str. Inaba G4222]
gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
gi|340046114|gb|EGR07048.1| DNA polymerase I [Vibrio cholerae HC-49A2]
gi|341626833|gb|EGS52189.1| DNA polymerase I [Vibrio cholerae HC-70A1]
gi|341628368|gb|EGS53626.1| DNA polymerase I [Vibrio cholerae HC-48A1]
gi|341628713|gb|EGS53931.1| DNA polymerase I [Vibrio cholerae HC-40A1]
gi|341641977|gb|EGS66488.1| DNA polymerase I [Vibrio cholerae HFU-02]
gi|341649245|gb|EGS73239.1| DNA polymerase I [Vibrio cholerae HC-38A1]
gi|356422919|gb|EHH76382.1| DNA polymerase I [Vibrio cholerae HC-06A1]
gi|356423645|gb|EHH77086.1| DNA polymerase I [Vibrio cholerae HC-21A1]
gi|356427793|gb|EHH81033.1| DNA polymerase I [Vibrio cholerae HC-19A1]
gi|356434606|gb|EHH87783.1| DNA polymerase I [Vibrio cholerae HC-23A1]
gi|356435980|gb|EHH89115.1| DNA polymerase I [Vibrio cholerae HC-22A1]
gi|356438865|gb|EHH91867.1| DNA polymerase I [Vibrio cholerae HC-28A1]
gi|356445560|gb|EHH98363.1| DNA polymerase I [Vibrio cholerae HC-32A1]
gi|356448614|gb|EHI01377.1| DNA polymerase I [Vibrio cholerae HC-43A1]
gi|356451269|gb|EHI03964.1| DNA polymerase I [Vibrio cholerae HC-33A2]
gi|356455549|gb|EHI08190.1| DNA polymerase I [Vibrio cholerae HC-61A1]
gi|356456844|gb|EHI09425.1| DNA polymerase I [Vibrio cholerae HC-48B2]
gi|378793516|gb|AFC56987.1| DNA polymerase I [Vibrio cholerae IEC224]
gi|395924140|gb|EJH34949.1| DNA polymerase I [Vibrio cholerae CP1032(5)]
gi|395925310|gb|EJH36110.1| DNA polymerase I [Vibrio cholerae CP1041(14)]
gi|395926448|gb|EJH37231.1| DNA polymerase I [Vibrio cholerae CP1038(11)]
gi|395929115|gb|EJH39866.1| DNA polymerase I [Vibrio cholerae CP1048(21)]
gi|395935946|gb|EJH46680.1| DNA polymerase I [Vibrio cholerae CP1042(15)]
gi|395936336|gb|EJH47061.1| DNA polymerase I [Vibrio cholerae CP1046(19)]
gi|395948110|gb|EJH58764.1| DNA polymerase I [Vibrio cholerae HC-20A2]
gi|395964992|gb|EJH75179.1| DNA polymerase I [Vibrio cholerae HC-56A2]
gi|395965192|gb|EJH75371.1| DNA polymerase I [Vibrio cholerae HC-57A2]
gi|395967822|gb|EJH77862.1| DNA polymerase I [Vibrio cholerae HC-42A1]
gi|395977010|gb|EJH86440.1| DNA polymerase I [Vibrio cholerae HC-47A1]
gi|395979654|gb|EJH88992.1| DNA polymerase I [Vibrio cholerae CP1030(3)]
gi|395980118|gb|EJH89418.1| DNA polymerase I [Vibrio cholerae CP1047(20)]
gi|408011333|gb|EKG49154.1| DNA polymerase I [Vibrio cholerae HC-39A1]
gi|408018277|gb|EKG55732.1| DNA polymerase I [Vibrio cholerae HC-41A1]
gi|408037782|gb|EKG74156.1| DNA polymerase I [Vibrio cholerae CP1037(10)]
gi|408038704|gb|EKG75032.1| DNA polymerase I [Vibrio cholerae CP1040(13)]
gi|408045826|gb|EKG81594.1| DNA polymerase I [Vibrio Cholerae CP1044(17)]
gi|408047697|gb|EKG83263.1| DNA polymerase I [Vibrio cholerae CP1050(23)]
gi|408612554|gb|EKK85889.1| DNA polymerase I family protein [Vibrio cholerae CP1033(6)]
gi|408628549|gb|EKL01285.1| DNA polymerase I family protein [Vibrio cholerae HC-17A1]
gi|408645047|gb|EKL16714.1| DNA polymerase I family protein [Vibrio cholerae HC-50A2]
gi|408660375|gb|EKL31393.1| DNA polymerase I family protein [Vibrio cholerae HC-77A1]
gi|408661197|gb|EKL32189.1| DNA polymerase I family protein [Vibrio cholerae HC-62A1]
gi|408850168|gb|EKL90144.1| DNA polymerase I family protein [Vibrio cholerae HC-37A1]
gi|408850499|gb|EKL90454.1| DNA polymerase I family protein [Vibrio cholerae HC-17A2]
gi|408876294|gb|EKM15422.1| DNA polymerase I family protein [Vibrio cholerae HC-62B1]
gi|408882369|gb|EKM21202.1| DNA polymerase I family protein [Vibrio cholerae HC-69A1]
gi|443433469|gb|ELS75975.1| DNA polymerase I [Vibrio cholerae HC-64A1]
gi|443437307|gb|ELS83403.1| DNA polymerase I [Vibrio cholerae HC-65A1]
gi|443441140|gb|ELS90807.1| DNA polymerase I [Vibrio cholerae HC-67A1]
gi|443444953|gb|ELS98209.1| DNA polymerase I [Vibrio cholerae HC-68A1]
gi|443448814|gb|ELT05427.1| DNA polymerase I [Vibrio cholerae HC-71A1]
gi|443451850|gb|ELT12092.1| DNA polymerase I [Vibrio cholerae HC-72A2]
gi|443460156|gb|ELT27545.1| DNA polymerase I [Vibrio cholerae HC-7A1]
gi|443463029|gb|ELT34044.1| DNA polymerase I [Vibrio cholerae HC-80A1]
gi|443467876|gb|ELT42530.1| DNA polymerase I [Vibrio cholerae HC-81A1]
gi|448265925|gb|EMB03158.1| DNA polymerase I [Vibrio cholerae O1 str. Inaba G4222]
Length = 934
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRGN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|360036669|ref|YP_004938432.1| DNA polymerase I [Vibrio cholerae O1 str. 2010EL-1786]
gi|356647823|gb|AET27878.1| DNA polymerase I [Vibrio cholerae O1 str. 2010EL-1786]
Length = 939
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 12 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 71
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 72 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 130
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 131 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 190
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 191 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRGN 247
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 248 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 286
>gi|422921361|ref|ZP_16954600.1| DNA polymerase I [Vibrio cholerae BJG-01]
gi|341649167|gb|EGS73162.1| DNA polymerase I [Vibrio cholerae BJG-01]
Length = 934
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|419827810|ref|ZP_14351303.1| DNA polymerase I family protein [Vibrio cholerae HC-1A2]
gi|419831471|ref|ZP_14354941.1| DNA polymerase I family protein [Vibrio cholerae HC-61A2]
gi|422915841|ref|ZP_16950198.1| DNA polymerase I [Vibrio cholerae HC-02A1]
gi|423810749|ref|ZP_17714791.1| DNA polymerase I family protein [Vibrio cholerae HC-55C2]
gi|423845608|ref|ZP_17718564.1| DNA polymerase I family protein [Vibrio cholerae HC-59A1]
gi|423877821|ref|ZP_17722194.1| DNA polymerase I family protein [Vibrio cholerae HC-60A1]
gi|423996013|ref|ZP_17739533.1| DNA polymerase I family protein [Vibrio cholerae HC-02C1]
gi|424014924|ref|ZP_17754815.1| DNA polymerase I family protein [Vibrio cholerae HC-55B2]
gi|424018069|ref|ZP_17757882.1| DNA polymerase I family protein [Vibrio cholerae HC-59B1]
gi|424623448|ref|ZP_18061936.1| DNA polymerase I [Vibrio cholerae HC-50A1]
gi|424628018|ref|ZP_18066341.1| DNA polymerase I [Vibrio cholerae HC-51A1]
gi|424631968|ref|ZP_18070100.1| DNA polymerase I [Vibrio cholerae HC-52A1]
gi|424638880|ref|ZP_18076788.1| DNA polymerase I [Vibrio cholerae HC-56A1]
gi|424647132|ref|ZP_18084823.1| DNA polymerase I [Vibrio cholerae HC-57A1]
gi|443526006|ref|ZP_21092109.1| DNA polymerase I [Vibrio cholerae HC-78A1]
gi|341641861|gb|EGS66378.1| DNA polymerase I [Vibrio cholerae HC-02A1]
gi|408017448|gb|EKG54951.1| DNA polymerase I [Vibrio cholerae HC-50A1]
gi|408023038|gb|EKG60219.1| DNA polymerase I [Vibrio cholerae HC-52A1]
gi|408028241|gb|EKG65146.1| DNA polymerase I [Vibrio cholerae HC-56A1]
gi|408038544|gb|EKG74881.1| DNA polymerase I [Vibrio cholerae HC-57A1]
gi|408059974|gb|EKG94701.1| DNA polymerase I [Vibrio cholerae HC-51A1]
gi|408624561|gb|EKK97505.1| DNA polymerase I family protein [Vibrio cholerae HC-1A2]
gi|408637382|gb|EKL09444.1| DNA polymerase I family protein [Vibrio cholerae HC-55C2]
gi|408645131|gb|EKL16797.1| DNA polymerase I family protein [Vibrio cholerae HC-60A1]
gi|408646316|gb|EKL17930.1| DNA polymerase I family protein [Vibrio cholerae HC-59A1]
gi|408652620|gb|EKL23830.1| DNA polymerase I family protein [Vibrio cholerae HC-61A2]
gi|408855519|gb|EKL95220.1| DNA polymerase I family protein [Vibrio cholerae HC-02C1]
gi|408862861|gb|EKM02362.1| DNA polymerase I family protein [Vibrio cholerae HC-55B2]
gi|408871453|gb|EKM10693.1| DNA polymerase I family protein [Vibrio cholerae HC-59B1]
gi|443455641|gb|ELT19405.1| DNA polymerase I [Vibrio cholerae HC-78A1]
Length = 934
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|417818709|ref|ZP_12465330.1| DNA polymerase I [Vibrio cholerae HE39]
gi|423943388|ref|ZP_17733049.1| DNA polymerase I family protein [Vibrio cholerae HE-40]
gi|423973242|ref|ZP_17736594.1| DNA polymerase I family protein [Vibrio cholerae HE-46]
gi|340044058|gb|EGR05013.1| DNA polymerase I [Vibrio cholerae HE39]
gi|408662575|gb|EKL33507.1| DNA polymerase I family protein [Vibrio cholerae HE-40]
gi|408666546|gb|EKL37330.1| DNA polymerase I family protein [Vibrio cholerae HE-46]
Length = 934
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|384423459|ref|YP_005632817.1| DNA polymerase I [Vibrio cholerae LMA3984-4]
gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3984-4]
Length = 934
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
Length = 934
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
Length = 930
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 3 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 62
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 63 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 121
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 122 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 181
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 182 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 238
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 239 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 277
>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
gi|227116440|ref|YP_002818336.1| DNA polymerase I [Vibrio cholerae O395]
gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
Length = 934
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRGN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|432747854|ref|ZP_19982514.1| DNA polymerase I [Escherichia coli KTE43]
gi|431289005|gb|ELF79752.1| DNA polymerase I [Escherichia coli KTE43]
Length = 928
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89]
gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1]
gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88]
gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
gi|386601905|ref|YP_006103411.1| DNA polymerase I [Escherichia coli IHE3034]
gi|386606456|ref|YP_006112756.1| DNA polymerase I [Escherichia coli UM146]
gi|419944324|ref|ZP_14460828.1| DNA polymerase I [Escherichia coli HM605]
gi|422356620|ref|ZP_16437300.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
gi|422751912|ref|ZP_16805818.1| DNA polymerase I [Escherichia coli H252]
gi|422841916|ref|ZP_16889884.1| DNA polymerase I [Escherichia coli H397]
gi|432360334|ref|ZP_19603544.1| DNA polymerase I [Escherichia coli KTE4]
gi|432365134|ref|ZP_19608286.1| DNA polymerase I [Escherichia coli KTE5]
gi|432576125|ref|ZP_19812591.1| DNA polymerase I [Escherichia coli KTE55]
gi|432590334|ref|ZP_19826683.1| DNA polymerase I [Escherichia coli KTE58]
gi|432598705|ref|ZP_19834979.1| DNA polymerase I [Escherichia coli KTE62]
gi|432756837|ref|ZP_19991379.1| DNA polymerase I [Escherichia coli KTE22]
gi|432781042|ref|ZP_20015256.1| DNA polymerase I [Escherichia coli KTE59]
gi|432789906|ref|ZP_20024031.1| DNA polymerase I [Escherichia coli KTE65]
gi|432818670|ref|ZP_20052390.1| DNA polymerase I [Escherichia coli KTE118]
gi|432824802|ref|ZP_20058464.1| DNA polymerase I [Escherichia coli KTE123]
gi|433002782|ref|ZP_20191289.1| DNA polymerase I [Escherichia coli KTE227]
gi|433010082|ref|ZP_20198491.1| DNA polymerase I [Escherichia coli KTE229]
gi|433156073|ref|ZP_20340994.1| DNA polymerase I [Escherichia coli KTE176]
gi|433165900|ref|ZP_20350621.1| DNA polymerase I [Escherichia coli KTE179]
gi|433170895|ref|ZP_20355507.1| DNA polymerase I [Escherichia coli KTE180]
gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89]
gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1]
gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli S88]
gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034]
gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146]
gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252]
gi|371603613|gb|EHN92264.1| DNA polymerase I [Escherichia coli H397]
gi|388419205|gb|EIL78953.1| DNA polymerase I [Escherichia coli HM605]
gi|430872616|gb|ELB96214.1| DNA polymerase I [Escherichia coli KTE4]
gi|430882792|gb|ELC05862.1| DNA polymerase I [Escherichia coli KTE5]
gi|431104027|gb|ELE08634.1| DNA polymerase I [Escherichia coli KTE55]
gi|431117251|gb|ELE20513.1| DNA polymerase I [Escherichia coli KTE58]
gi|431130218|gb|ELE32327.1| DNA polymerase I [Escherichia coli KTE62]
gi|431299081|gb|ELF88657.1| DNA polymerase I [Escherichia coli KTE22]
gi|431323663|gb|ELG11135.1| DNA polymerase I [Escherichia coli KTE59]
gi|431334501|gb|ELG21659.1| DNA polymerase I [Escherichia coli KTE65]
gi|431373038|gb|ELG58698.1| DNA polymerase I [Escherichia coli KTE118]
gi|431377160|gb|ELG62293.1| DNA polymerase I [Escherichia coli KTE123]
gi|431520619|gb|ELH97940.1| DNA polymerase I [Escherichia coli KTE229]
gi|431521362|gb|ELH98608.1| DNA polymerase I [Escherichia coli KTE227]
gi|431669352|gb|ELJ35776.1| DNA polymerase I [Escherichia coli KTE176]
gi|431682917|gb|ELJ48562.1| DNA polymerase I [Escherichia coli KTE179]
gi|431683317|gb|ELJ48954.1| DNA polymerase I [Escherichia coli KTE180]
Length = 928
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5]
gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5]
Length = 928
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101]
gi|432384792|ref|ZP_19627699.1| DNA polymerase I [Escherichia coli KTE16]
gi|432907725|ref|ZP_20116085.1| DNA polymerase I [Escherichia coli KTE194]
gi|432969455|ref|ZP_20158362.1| DNA polymerase I [Escherichia coli KTE207]
gi|433040897|ref|ZP_20228480.1| DNA polymerase I [Escherichia coli KTE113]
gi|433084808|ref|ZP_20271250.1| DNA polymerase I [Escherichia coli KTE133]
gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101]
gi|430911744|gb|ELC33013.1| DNA polymerase I [Escherichia coli KTE16]
gi|431425854|gb|ELH07900.1| DNA polymerase I [Escherichia coli KTE194]
gi|431489979|gb|ELH69602.1| DNA polymerase I [Escherichia coli KTE207]
gi|431547607|gb|ELI21903.1| DNA polymerase I [Escherichia coli KTE113]
gi|431597104|gb|ELI67017.1| DNA polymerase I [Escherichia coli KTE133]
Length = 928
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|432516269|ref|ZP_19753482.1| DNA polymerase I [Escherichia coli KTE224]
gi|432701395|ref|ZP_19936537.1| DNA polymerase I [Escherichia coli KTE169]
gi|433146518|ref|ZP_20331645.1| DNA polymerase I [Escherichia coli KTE168]
gi|431037752|gb|ELD48727.1| DNA polymerase I [Escherichia coli KTE224]
gi|431239483|gb|ELF33960.1| DNA polymerase I [Escherichia coli KTE169]
gi|431656828|gb|ELJ23802.1| DNA polymerase I [Escherichia coli KTE168]
Length = 928
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|429058191|ref|ZP_19122432.1| DNA polymerase I, partial [Escherichia coli 97.1742]
gi|427307730|gb|EKW70162.1| DNA polymerase I, partial [Escherichia coli 97.1742]
Length = 268
Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 118/257 (45%), Positives = 159/257 (61%), Gaps = 16/257 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDL 246
++ TIKTD +L
Sbjct: 242 VAYLSYQLATIKTDVEL 258
>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
Length = 957
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 120/280 (42%), Positives = 173/280 (61%), Gaps = 9/280 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA +FDAK
Sbjct: 32 ENPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 91
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP L QI +HQ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 92 GKTFRDDMYPEYKANRPPMPDELRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGTLAYQA 151
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+G
Sbjct: 152 -SQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYLALMG 210
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV +G KTA LL L + ++ ++I + + + KK++
Sbjct: 211 DKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSK------TMAKKLVD 264
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
K + L+ + +I + LQ E LL NK +L KL
Sbjct: 265 NKDNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKL 304
>gi|449145679|ref|ZP_21776481.1| DNA polymerase I [Vibrio mimicus CAIM 602]
gi|449078712|gb|EMB49644.1| DNA polymerase I [Vibrio mimicus CAIM 602]
Length = 938
Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + IA IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP +L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE++ N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM + K
Sbjct: 243 ANLSYQLATIKCDVELEES----PQTLLKQTPDRDALMTWYGK 281
>gi|417514747|ref|ZP_12178470.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|353632934|gb|EHC79874.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
Length = 535
Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
gi|440711971|ref|ZP_20892598.1| DNA polymerase I [Vibrio cholerae 4260B]
gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
gi|439972394|gb|ELP48680.1| DNA polymerase I [Vibrio cholerae 4260B]
Length = 934
Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMIRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRGN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
Length = 933
Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats.
Identities = 128/290 (44%), Positives = 177/290 (61%), Gaps = 18/290 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL S+E + N ++I + + + L K
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNKANADM 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLI-LQPK-DE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ QP DE KL QL K LN+L
Sbjct: 246 SYELATIKLDVELEET----PESLVKAQPNIDELIKLYGQLVFKSWLNEL 291
>gi|417490155|ref|ZP_12172924.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353631151|gb|EHC78522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
Length = 532
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 245 LSYKLATIKTDVELELTC----EQLEVQQPIADELLGLFKKYEFKR 286
>gi|417394574|ref|ZP_12156712.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353605095|gb|EHC59700.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
Length = 535
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|432383777|ref|ZP_19626700.1| DNA polymerase I [Escherichia coli KTE15]
gi|432613883|ref|ZP_19850038.1| DNA polymerase I [Escherichia coli KTE72]
gi|432648551|ref|ZP_19884334.1| DNA polymerase I [Escherichia coli KTE86]
gi|432658116|ref|ZP_19893811.1| DNA polymerase I [Escherichia coli KTE93]
gi|432940725|ref|ZP_20138599.1| DNA polymerase I [Escherichia coli KTE183]
gi|432987726|ref|ZP_20176435.1| DNA polymerase I [Escherichia coli KTE215]
gi|433103479|ref|ZP_20289545.1| DNA polymerase I [Escherichia coli KTE145]
gi|433190687|ref|ZP_20374770.1| DNA polymerase I [Escherichia coli KTE88]
gi|430902779|gb|ELC24583.1| DNA polymerase I [Escherichia coli KTE15]
gi|431145805|gb|ELE47410.1| DNA polymerase I [Escherichia coli KTE72]
gi|431177261|gb|ELE77193.1| DNA polymerase I [Escherichia coli KTE86]
gi|431187165|gb|ELE86678.1| DNA polymerase I [Escherichia coli KTE93]
gi|431459417|gb|ELH39711.1| DNA polymerase I [Escherichia coli KTE183]
gi|431493006|gb|ELH72601.1| DNA polymerase I [Escherichia coli KTE215]
gi|431615557|gb|ELI84685.1| DNA polymerase I [Escherichia coli KTE145]
gi|431701147|gb|ELJ66067.1| DNA polymerase I [Escherichia coli KTE88]
Length = 928
Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|421492965|ref|ZP_15940323.1| POLA [Morganella morganii subsp. morganii KT]
gi|455737808|ref|YP_007504074.1| DNA polymerase I [Morganella morganii subsp. morganii KT]
gi|400192593|gb|EJO25731.1| POLA [Morganella morganii subsp. morganii KT]
gi|455419371|gb|AGG29701.1| DNA polymerase I [Morganella morganii subsp. morganii KT]
Length = 930
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 127/288 (44%), Positives = 174/288 (60%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y +++A +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYHAFPPLTNSAGQPTGAMYGVLNMLRSLIMQYEPSHVAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ +YK+ R MP +L QI +H MV A+G P+L + GVEADDVIGTLAKQA
Sbjct: 67 KTFRDELFEAYKSHRPPMPDDLREQIAPLHDMVVAMGMPLLSVSGVEADDVIGTLAKQAA 126
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V+IST DKDMAQLV+ I LIN NN I + +++GV P I+DY +L+GD
Sbjct: 127 AEGR-AVLISTGDKDMAQLVTPDITLINTMNNTILGPEEVETKYGVPPSLIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
SDN+PGV +G KTA LL SL++I + + I G+ + R A PK++
Sbjct: 186 SSDNIPGVPGVGEKTAQALLQGLGSLDDIYADLDKIAGL---SFRGAKTLAPKMETNKEM 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD +L +SL+L D L LF +Y+ +
Sbjct: 243 AYLSYTLATIKTDVELD----CTWDSLVLTEPDLDKLHALFTQYEFKR 286
>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
Length = 933
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 128/290 (44%), Positives = 177/290 (61%), Gaps = 18/290 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL S+E + N ++I + + + L K
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNKANADM 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLI-LQPK-DE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ QP DE KL QL K LN+L
Sbjct: 246 SYELATIKLDVELEET----PESLVKAQPNIDELIKLYGQLVFKSWLNEL 291
>gi|417535194|ref|ZP_12188753.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|353657251|gb|EHC97754.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
Length = 535
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|423203112|ref|ZP_17189690.1| DNA polymerase I [Aeromonas veronii AER39]
gi|404613755|gb|EKB10774.1| DNA polymerase I [Aeromonas veronii AER39]
Length = 921
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 130/291 (44%), Positives = 185/291 (63%), Gaps = 22/291 (7%)
Query: 3 NTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
N L+LVDGSS +YRAF+A D+R P GA+ M+R L K Y ++A +FDA
Sbjct: 5 NPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSLRKQYPDCHVAVVFDA 64
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKATR MP +L Q+ IHQM+KA+G+P L+++GVEADDVIGTLA+Q
Sbjct: 65 KGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADDVIGTLARQ 124
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L V+IST DKDMAQLVS+ + LI+ K DR +I +FGV PE I+DY +L+
Sbjct: 125 A-TEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK--- 235
GD DN+PG+ +G KTA+ LL S++ I A N+ V R + + K +
Sbjct: 184 GDKVDNIPGMTGVGEKTALALLQGIGSIDEI---AANLDKVAALGFRGSKAFADKFREQE 240
Query: 236 -------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
++ TIKTD +L +++ E L+L+P D++ L+ ++ +Y+L L
Sbjct: 241 EQVRLSYRLATIKTDVELEQSL----EELLLKPVDKESLLAVYREYELRNL 287
>gi|406675197|ref|ZP_11082387.1| DNA polymerase I [Aeromonas veronii AMC35]
gi|404627967|gb|EKB24756.1| DNA polymerase I [Aeromonas veronii AMC35]
Length = 921
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 130/291 (44%), Positives = 185/291 (63%), Gaps = 22/291 (7%)
Query: 3 NTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
N L+LVDGSS +YRAF+A D+R P GA+ M+R L K Y ++A +FDA
Sbjct: 5 NPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSLRKQYPDCHVAVVFDA 64
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKATR MP +L Q+ IHQM+KA+G+P L+++GVEADDVIGTLA+Q
Sbjct: 65 KGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADDVIGTLARQ 124
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L V+IST DKDMAQLVS+ + LI+ K DR +I +FGV PE I+DY +L+
Sbjct: 125 A-TEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK--- 235
GD DN+PG+ +G KTA+ LL S++ I A N+ V R + + K +
Sbjct: 184 GDKVDNIPGMTGVGEKTALALLQGIGSIDEI---AANLDKVAALGFRGSKAFADKFREQE 240
Query: 236 -------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
++ TIKTD +L +++ E L+L+P D++ L+ ++ +Y+L L
Sbjct: 241 EQVRLSYRLATIKTDVELEQSL----EELLLKPVDKESLLAVYREYELRNL 287
>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
Length = 938
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + IA IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMVRSMMRQFASDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP +L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE++ N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM + K
Sbjct: 243 ANLSYQLATIKCDVELEES----PQTLLKQTPDRDALMTWYGK 281
>gi|421786277|ref|ZP_16222686.1| DNA-directed DNA polymerase I [Serratia plymuthica A30]
gi|407751623|gb|EKF61797.1| DNA-directed DNA polymerase I [Serratia plymuthica A30]
Length = 933
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L+ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ P I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPALIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N +NI + N R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALYANLDNIATL---NFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L +S E L + P D L QLF +Y+ +
Sbjct: 242 VAYLSYKLATIKTDVELD---LSCAE-LEVSPLDVDALQQLFKQYEFKR 286
>gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13]
gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13]
Length = 933
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L+ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ P I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPALIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N +NI + N R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALYANLDNIATL---NFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L +S E L + P D L QLF +Y+ +
Sbjct: 242 VAYLSYKLATIKTDVELD---LSCAE-LEVSPLDVDALQQLFKQYEFKR 286
>gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354]
gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354]
Length = 928
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 176/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL +LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-ELFKKYEFKR 286
>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
Length = 937
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 127/290 (43%), Positives = 177/290 (61%), Gaps = 18/290 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PG+ +G KTA LL S+E + N ++I + + + L K
Sbjct: 186 KVDNIPGIPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNKDNADM 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLI-LQPK-DE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ QP DE KL QL K LN+L
Sbjct: 246 SYQLATIKLDVELEET----PESLVKAQPNIDELIKLYGQLVFKSWLNEL 291
>gi|424658015|ref|ZP_18095284.1| DNA polymerase I [Vibrio cholerae HE-16]
gi|408057005|gb|EKG91874.1| DNA polymerase I [Vibrio cholerae HE-16]
Length = 934
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 120/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQVGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE + N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM L+ K
Sbjct: 243 AKLSYQLATIKCDVELEES----PQTLLKQTPDRDALMSLYGK 281
>gi|417353881|ref|ZP_12130465.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417471096|ref|ZP_12167145.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|353563307|gb|EHC29696.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353623660|gb|EHC72886.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
Length = 535
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|424863848|ref|ZP_18287760.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86A]
gi|400757169|gb|EJP71381.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86A]
Length = 890
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 177/283 (62%), Gaps = 8/283 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M++ + ++DGSS +YRA++A+P + P GA+ G ML L K+ + I +FDA
Sbjct: 1 MKDRIFVIDGSSYLYRAYHAMPPLSTSKGQPTGAVKGVTNMLMNLKKDSEGSPIIVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FRN +Y YKA R MP L LQ+ + + KAIG+P++ I+GVEADDVI T+ K
Sbjct: 61 KGKTFRNDIYSEYKANRPPMPDELRLQLQPVKSICKAIGFPLIEIEGVEADDVIATITKM 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHD---RTTIISRFGVSPEKIVDYFSL 177
A K ++S+ DKD+ QLV + + N H+ + +FGV P +I D +L
Sbjct: 121 A-KDAKYKCVVSSLDKDLMQLVEDPDTTLMNTMKHEIFNEDKVFEKFGVKPSQIRDMLAL 179
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD SDN+PGV K+G KTA K LN+Y +LE II+NA++IKGV+G NLR +L+ L + ++
Sbjct: 180 VGDSSDNIPGVSKVGQKTAAKWLNEYGNLEGIISNADSIKGVVGDNLRNSLDDLDRNIEL 239
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKLN 280
+++K D DL + + LI P DE+ L ++FN+ + +N
Sbjct: 240 VSLKEDVDLN---LKFEDLLICNP-DEEELEKIFNELEFAAIN 278
>gi|417361820|ref|ZP_12135623.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353583009|gb|EHC43496.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
Length = 536
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|373468008|ref|ZP_09559294.1| DNA-directed DNA polymerase [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371757046|gb|EHO45845.1| DNA-directed DNA polymerase [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 935
Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats.
Identities = 127/292 (43%), Positives = 186/292 (63%), Gaps = 15/292 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNTAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N I+G +G+ L N
Sbjct: 186 SADNIPGVASVGEKTALGLLQGIGSMAEIYANLEKVSELPIRGAKKLGEKLLAEKNNADL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L V+ E L+ + ++++L+ + F +Y+ + LN +M+
Sbjct: 246 SYTLATIKTDVELN---VTTDELLLGESQNDQLI-EYFARYEFKRWLNEVMN 293
>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
gi|387869289|ref|YP_005700758.1| DNA polymerase I [Edwardsiella tarda FL6-60]
gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
Length = 930
Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats.
Identities = 124/291 (42%), Positives = 180/291 (61%), Gaps = 24/291 (8%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLMQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMV+A+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVEAMGLPLLVVPGVEADDVIGTLARRA 125
Query: 122 --VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
+H V+IST DKDMAQLV+ I LIN N + + ++GV P I+D+ +L
Sbjct: 126 ELAGRH---VLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVCDKYGVPPSLIIDFLAL 182
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI-----KGVIGKNLRFALNWLP 232
+GD SDN+PGV +G KTA LL SL+ I ++ + + +G + LN
Sbjct: 183 MGDASDNIPGVPGVGEKTAQALLQGIGSLKTIYDDLDRVATLSFRGAKTMGAKLLLN--- 239
Query: 233 KLKKIL-----TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K K L TIKTD DL ++ + L ++P D + L +LF++Y+ +
Sbjct: 240 KEKADLSYLLATIKTDVDLAQDC----DDLAIKPLDSETLHRLFSRYEFKR 286
>gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
Length = 478
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/286 (43%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H +VKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 245 LSYKLATIKTDVELELTC----EQLEVQQPIADELLGLFKKYEFKR 286
>gi|432619180|ref|ZP_19855276.1| DNA polymerase I [Escherichia coli KTE75]
gi|431150112|gb|ELE51169.1| DNA polymerase I [Escherichia coli KTE75]
Length = 928
Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPVAEELLGLFKKYEFKR 286
>gi|333929795|ref|YP_004503374.1| DNA polymerase I [Serratia sp. AS12]
gi|333934748|ref|YP_004508326.1| DNA polymerase I [Serratia plymuthica AS9]
gi|386331618|ref|YP_006027788.1| DNA polymerase I [Serratia sp. AS13]
gi|333476355|gb|AEF48065.1| DNA polymerase I [Serratia plymuthica AS9]
gi|333493855|gb|AEF53017.1| DNA polymerase I [Serratia sp. AS12]
gi|333963951|gb|AEG30724.1| DNA polymerase I [Serratia sp. AS13]
Length = 933
Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L+ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDDLFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ P I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPALIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N +NI + N R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALYANLDNIATL---NFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L +S E L + P D L QLF +Y+ +
Sbjct: 242 VAYLSYKLATIKTDVELD---LSCAE-LEVSPLDVDTLQQLFKQYEFKR 286
>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
Length = 950
Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats.
Identities = 125/288 (43%), Positives = 178/288 (61%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLIAQVEPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 67 KTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
K V+IST DKDMAQLV+ I LIN N + DR +I ++G+ PE I+DY +L GD
Sbjct: 126 AKDGKDVLISTGDKDMAQLVNEHIMLINTMTNTLLDREGVIEKYGIPPELIIDYLALRGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK---- 236
SDN+PGVK +G KTA+ LL S++ I N + ++ + + R A + PKL+
Sbjct: 186 SSDNIPGVKGVGEKTALALLQGIGSIQTIYQNLDKVEEL---SFRGAKTFAPKLEAEKEM 242
Query: 237 ------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD +L + L P++ L+ LF++Y+ K
Sbjct: 243 ADLSYLLATIKTDVELEFR----HDQLTTSPQNHDELVALFSQYEFKK 286
>gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
Length = 928
Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 176/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV++ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTSNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
Length = 938
Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats.
Identities = 119/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP +L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE++ N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM + K
Sbjct: 243 ANLSYQLATIKCDVELEES----PQTLLKQTPDRDALMTWYGK 281
>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
Length = 938
Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats.
Identities = 119/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP +L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE++ N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM + K
Sbjct: 243 ANLSYQLATIKCDVELEES----PQTLLKQTPDRDALMTWYGK 281
>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
Length = 938
Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats.
Identities = 119/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP +L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE++ N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAAL---GFRGSKTMAQKLEENRDN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM + K
Sbjct: 243 ANLSYQLATIKCDVELEES----PQTLLKQTPDRDALMAWYGK 281
>gi|424810745|ref|ZP_18236086.1| DNA polymerase I [Vibrio mimicus SX-4]
gi|342322117|gb|EGU17911.1| DNA polymerase I [Vibrio mimicus SX-4]
Length = 943
Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats.
Identities = 119/283 (42%), Positives = 172/283 (60%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 12 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 71
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP +L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 72 KTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 130
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 131 SQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 190
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL LE++ N + I + R + KL+
Sbjct: 191 KVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAAL---GFRGSKTMAQKLEENRDN 247
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D +L ++ P++L+ Q D LM + K
Sbjct: 248 ANLSYQLATIKCDVELEES----PQTLLKQTPDRDALMAWYGK 286
>gi|432374190|ref|ZP_19617221.1| DNA polymerase I [Escherichia coli KTE11]
gi|430893612|gb|ELC15936.1| DNA polymerase I [Escherichia coli KTE11]
Length = 928
Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 177/289 (61%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L +QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRVQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV++ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTSNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|407069591|ref|ZP_11100429.1| DNA polymerase I [Vibrio cyclitrophicus ZF14]
Length = 937
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 128/290 (44%), Positives = 177/290 (61%), Gaps = 18/290 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SALGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL S+E + N ++I + + + L K
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNKANADM 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLI-LQPK-DE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ QP DE KL QL K LN+L
Sbjct: 246 SYQLATIKLDVELEET----PESLVKAQPNIDELIKLYGQLVFKSWLNEL 291
>gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197]
gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617]
gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197]
gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617]
Length = 928
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYGEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|422835409|ref|ZP_16883464.1| DNA polymerase I [Escherichia coli E101]
gi|371612389|gb|EHO00900.1| DNA polymerase I [Escherichia coli E101]
Length = 928
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSSGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|366158352|ref|ZP_09458214.1| DNA polymerase I [Escherichia sp. TW09308]
Length = 928
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 177/289 (61%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L +QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRVQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV++ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTSNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|417844401|ref|ZP_12490445.1| DNA polymerase I [Haemophilus haemolyticus M21639]
gi|341956854|gb|EGT83270.1| DNA polymerase I [Haemophilus haemolyticus M21639]
Length = 935
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 123/295 (41%), Positives = 183/295 (62%), Gaps = 21/295 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLIDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+LT
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLT 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
KT+ DL+ + +I + L+L + L++ F +Y+ + LN +M+
Sbjct: 239 EKTNADLSYTLATIKTDVELNVTTDELLLGESQNEQLIEYFARYEFKRWLNEVMN 293
>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
Length = 950
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 125/288 (43%), Positives = 177/288 (61%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N + P GA+YG + ML+ L ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLIAQVEPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YK+ R MP +L Q+ +H ++KA+G P++ I+GVEADDVIGTLA QA
Sbjct: 67 KTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
K V+IST DKDMAQLV+ I LIN N + DR +I ++G+ PE I+DY +L GD
Sbjct: 126 AKAGKDVLISTGDKDMAQLVNEHIMLINTMTNTLLDREGVIEKYGIPPELIIDYLALRGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK---- 236
SDN+PGVK +G KTA+ LL S++ I N + + + + R A + PKL+
Sbjct: 186 SSDNIPGVKGVGEKTALALLQGIGSIQTIYQNLDKVAEL---SFRGAKTFAPKLEAEKEM 242
Query: 237 ------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD +L + L P++ L+ LF++Y+ K
Sbjct: 243 ADLSYLLATIKTDVELEFR----HDQLTTSPQNHDELVALFSQYEFKK 286
>gi|420333477|ref|ZP_14835115.1| DNA polymerase I [Shigella flexneri K-1770]
gi|391245445|gb|EIQ04713.1| DNA polymerase I [Shigella flexneri K-1770]
Length = 928
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYTEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|407892765|ref|ZP_11151795.1| DNA polymerase I [Diplorickettsia massiliensis 20B]
Length = 901
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 113/247 (45%), Positives = 164/247 (66%), Gaps = 3/247 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+ L+LVDGSS +YRA++ALP + N P GA+YG + MLRKL K+Y Y+A +FD+K
Sbjct: 3 KKPLILVDGSSYLYRAYHALPPLNNSQGQPTGAIYGVVNMLRKLLKSYTPEYLAIVFDSK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
K FR+ L YKA R MP L QI ++ ++ A+G P + GVEADD+I TLA++
Sbjct: 63 EKTFRHSLCEDYKANRPTMPEELQQQIEPLYAIIDAMGLPRFLQPGVEADDIIATLAEKL 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+ + ++IS+ DKD AQLV+ I L+N + D ++++FGV+PE+I+DY +L+G
Sbjct: 123 VSA-DQPILISSGDKDFAQLVNAHIILVNTMSETYLDEQGVLAKFGVTPEQIIDYLALVG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D SDN+ GV +GPKTA K L Y SL N++ +A +I G IG+ LR L+ L ++++T
Sbjct: 182 DTSDNVAGVPGVGPKTAAKWLQHYGSLSNLVAHAADIPGKIGEKLRAHLDQLSLAQRLVT 241
Query: 240 IKTDCDL 246
IK D DL
Sbjct: 242 IKRDVDL 248
>gi|342903660|ref|ZP_08725468.1| DNA polymerase I [Haemophilus haemolyticus M21621]
gi|341954911|gb|EGT81380.1| DNA polymerase I [Haemophilus haemolyticus M21621]
Length = 935
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 121/288 (42%), Positives = 177/288 (61%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK 278
KT+ DL+ + +I + L+L+ L++ F +Y+ +
Sbjct: 239 EKTNADLSYTLATIKTDVELNVTTDELLLRESQNDQLIEYFGRYEFKR 286
>gi|417841860|ref|ZP_12487958.1| DNA polymerase I [Haemophilus haemolyticus M19501]
gi|341948234|gb|EGT74865.1| DNA polymerase I [Haemophilus haemolyticus M19501]
Length = 935
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 124/295 (42%), Positives = 181/295 (61%), Gaps = 21/295 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
KT+ DL+ + +I + L+L L++ F +Y+ + LN +M+
Sbjct: 239 EKTNADLSYTLATIKTDVELNVTTDQLLLGESQNDQLIEYFARYEFKRWLNEVMN 293
>gi|415770541|ref|ZP_11484884.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-2]
gi|348656714|gb|EGY74321.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D17P-2]
Length = 933
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/286 (44%), Positives = 176/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVD SS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDSSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I+G +GK L A +
Sbjct: 186 SSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGKKL-LAEKAMAD 244
Query: 234 LKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L L TIKTD L + P L + D L+ F +Y+ +
Sbjct: 245 LSYALATIKTDVMLEFS----PHELAIGDSDNDALIAYFGRYEFKR 286
>gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895]
gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895]
Length = 928
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 125/286 (43%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L +S + + QP E+LL LF KY+ +
Sbjct: 245 LSYQLATIKTDVELE---LSCDQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|419357576|ref|ZP_13898820.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC13C]
gi|378195296|gb|EHX55795.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC13C]
Length = 928
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|419347639|ref|ZP_13889004.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC13A]
gi|419352100|ref|ZP_13893425.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC13B]
gi|419362546|ref|ZP_13903750.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC13D]
gi|419367692|ref|ZP_13908839.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC13E]
gi|378182038|gb|EHX42693.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC13A]
gi|378195438|gb|EHX55936.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC13B]
gi|378197868|gb|EHX58343.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC13D]
gi|378209426|gb|EHX69799.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC13E]
Length = 928
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|417692309|ref|ZP_12341507.1| DNA polymerase I [Shigella boydii 5216-82]
gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82]
Length = 928
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGCPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKKMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
33392]
gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
33392]
Length = 932
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/292 (43%), Positives = 180/292 (61%), Gaps = 15/292 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H +++A+G P+L+I+GVEADDVIGTLA +A
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLVIEGVEADDVIGTLAVEA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K N KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKANQKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREAVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N + I+G +G L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLDKVAELPIRGAKKLGDKLLAEKEMADL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
++ TIKTD L PE L L + L + F +Y+ + LN +M+
Sbjct: 246 SYRLATIKTDVALDIT----PEQLTLGASNNDQLTEYFGRYEFKRWLNEVMN 293
>gi|432878270|ref|ZP_20095680.1| DNA polymerase I [Escherichia coli KTE154]
gi|431417054|gb|ELG99524.1| DNA polymerase I [Escherichia coli KTE154]
Length = 928
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRSVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
Length = 933
Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 172/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L+ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLVTPGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I + ++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNITLINTMNNTILGPQEVCDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N+ G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLY---GNLDGIAALSFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L L + +D L QLF Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELEITCA----DLTVAEQDADQLQQLFKHYEFKR 286
>gi|432871788|ref|ZP_20091782.1| DNA polymerase I [Escherichia coli KTE147]
gi|431407283|gb|ELG90495.1| DNA polymerase I [Escherichia coli KTE147]
Length = 928
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKSGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|419840236|ref|ZP_14363632.1| DNA-directed DNA polymerase [Haemophilus haemolyticus HK386]
gi|386908057|gb|EIJ72756.1| DNA-directed DNA polymerase [Haemophilus haemolyticus HK386]
Length = 935
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/292 (43%), Positives = 182/292 (62%), Gaps = 15/292 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N I+G +G+ L N
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKNNADL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L N+ + + L L L++ F +Y+ + LN +M+
Sbjct: 246 SYTLATIKTDVEL--NVTT--DQLFLGESQNDQLIEYFARYEFKRWLNEVMN 293
>gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227]
gi|420355446|ref|ZP_14856510.1| DNA polymerase I [Shigella boydii 4444-74]
gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227]
gi|391272350|gb|EIQ31204.1| DNA polymerase I [Shigella boydii 4444-74]
Length = 928
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLQQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|410087504|ref|ZP_11284207.1| DNA polymerase I [Morganella morganii SC01]
gi|409765948|gb|EKN50046.1| DNA polymerase I [Morganella morganii SC01]
Length = 930
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/288 (44%), Positives = 173/288 (60%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y +++A +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYHAFPPLTNSAGQPTGAMYGVLNMLRSLIMQYEPSHVAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ +YK+ R MP +L QI +H MV A+G P+L + GVEADDVIGTLAKQA
Sbjct: 67 KTFRDELFEAYKSHRPPMPDDLREQIAPLHDMVVAMGMPLLSVSGVEADDVIGTLAKQAA 126
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V+IST DKDMAQLV+ I LIN NN I + +++GV P I+DY +L+GD
Sbjct: 127 AEGR-AVLISTGDKDMAQLVTPDITLINTMNNTILGPEEVETKYGVPPSLIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
SDN+PGV +G KTA LL SL++I + + I G+ + R A PK++
Sbjct: 186 SSDNIPGVPGVGEKTAQALLQGLGSLDDIYADLDKIAGL---SFRGAKTLAPKMETNKEM 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD +L +SL L D L LF +Y+ +
Sbjct: 243 AYLSYTLATIKTDVELD----CTWDSLALTEPDLDKLHALFTQYEFKR 286
>gi|420104970|ref|ZP_14615562.1| DNA polymerase I [Escherichia coli O111:H11 str. CVM9455]
gi|394400822|gb|EJE76714.1| DNA polymerase I [Escherichia coli O111:H11 str. CVM9455]
Length = 928
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|419229262|ref|ZP_13772098.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC9A]
gi|419251540|ref|ZP_13794105.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC9E]
gi|378068593|gb|EHW30691.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC9A]
gi|378089642|gb|EHW51484.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC9E]
Length = 928
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|419212384|ref|ZP_13755445.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC8C]
gi|378047856|gb|EHW10213.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC8C]
Length = 928
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
Length = 928
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
gi|415865198|ref|ZP_11538083.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1]
gi|417202174|ref|ZP_12018424.1| DNA-directed DNA polymerase [Escherichia coli 4.0522]
gi|417208254|ref|ZP_12020273.1| DNA-directed DNA polymerase [Escherichia coli JB1-95]
gi|417594329|ref|ZP_12245015.1| DNA polymerase I [Escherichia coli 2534-86]
gi|417641881|ref|ZP_12292003.1| DNA polymerase I [Escherichia coli TX1999]
gi|418040246|ref|ZP_12678493.1| DNA-directed DNA polymerase [Escherichia coli W26]
gi|419172818|ref|ZP_13716688.1| DNA polymerase I [Escherichia coli DEC7A]
gi|419183380|ref|ZP_13726984.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC7C]
gi|419188994|ref|ZP_13732495.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC7D]
gi|419193930|ref|ZP_13737367.1| DNA polymerase I [Escherichia coli DEC7E]
gi|419199648|ref|ZP_13742934.1| DNA polymerase I [Escherichia coli DEC8A]
gi|419206032|ref|ZP_13749184.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC8B]
gi|419223963|ref|ZP_13766871.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC8E]
gi|419235133|ref|ZP_13777895.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC9B]
gi|419245961|ref|ZP_13788589.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC9D]
gi|419286565|ref|ZP_13828725.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC10F]
gi|419372413|ref|ZP_13913520.1| DNA polymerase I [Escherichia coli DEC14A]
gi|419377989|ref|ZP_13919002.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC14B]
gi|419383382|ref|ZP_13924320.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC14C]
gi|419388618|ref|ZP_13929481.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC14D]
gi|419891458|ref|ZP_14411543.1| DNA polymerase I [Escherichia coli O111:H8 str. CVM9570]
gi|419895921|ref|ZP_14415694.1| DNA polymerase I [Escherichia coli O111:H8 str. CVM9574]
gi|419947806|ref|ZP_14464121.1| DNA polymerase I [Escherichia coli CUMT8]
gi|420088854|ref|ZP_14600713.1| DNA polymerase I [Escherichia coli O111:H8 str. CVM9602]
gi|420097575|ref|ZP_14608871.1| DNA polymerase I [Escherichia coli O111:H8 str. CVM9634]
gi|420388222|ref|ZP_14887550.1| DNA polymerase I [Escherichia coli EPECa12]
gi|422963564|ref|ZP_16973178.1| DNA polymerase I [Escherichia coli H494]
gi|424768925|ref|ZP_18196163.1| DNA polymerase I [Escherichia coli O111:H8 str. CFSAN001632]
gi|427807054|ref|ZP_18974121.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Escherichia coli chi7122]
gi|427811643|ref|ZP_18978708.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Escherichia coli]
gi|432811606|ref|ZP_20045460.1| DNA polymerase I [Escherichia coli KTE101]
gi|432965621|ref|ZP_20154542.1| DNA polymerase I [Escherichia coli KTE203]
gi|433132438|ref|ZP_20317856.1| DNA polymerase I [Escherichia coli KTE163]
gi|433137110|ref|ZP_20322431.1| DNA polymerase I [Escherichia coli KTE166]
gi|443615339|ref|YP_007379195.1| DNA polymerase I [Escherichia coli APEC O78]
gi|450227601|ref|ZP_21897574.1| DNA polymerase I [Escherichia coli O08]
gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1]
gi|345331436|gb|EGW63896.1| DNA polymerase I [Escherichia coli 2534-86]
gi|345389398|gb|EGX19203.1| DNA polymerase I [Escherichia coli TX1999]
gi|371591668|gb|EHN80611.1| DNA polymerase I [Escherichia coli H494]
gi|378009935|gb|EHV72883.1| DNA polymerase I [Escherichia coli DEC7A]
gi|378020776|gb|EHV83508.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC7C]
gi|378023768|gb|EHV86437.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC7D]
gi|378034351|gb|EHV96916.1| DNA polymerase I [Escherichia coli DEC7E]
gi|378042601|gb|EHW05048.1| DNA polymerase I [Escherichia coli DEC8A]
gi|378043089|gb|EHW05527.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC8B]
gi|378060496|gb|EHW22686.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC8E]
gi|378073037|gb|EHW35091.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC9B]
gi|378086299|gb|EHW48177.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC9D]
gi|378125461|gb|EHW86861.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC10F]
gi|378212873|gb|EHX73193.1| DNA polymerase I [Escherichia coli DEC14A]
gi|378214579|gb|EHX74885.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC14B]
gi|378223864|gb|EHX84074.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC14C]
gi|378227514|gb|EHX87685.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC14D]
gi|383476838|gb|EID68770.1| DNA-directed DNA polymerase [Escherichia coli W26]
gi|386187061|gb|EIH75884.1| DNA-directed DNA polymerase [Escherichia coli 4.0522]
gi|386196794|gb|EIH91007.1| DNA-directed DNA polymerase [Escherichia coli JB1-95]
gi|388349887|gb|EIL15319.1| DNA polymerase I [Escherichia coli O111:H8 str. CVM9570]
gi|388359645|gb|EIL23932.1| DNA polymerase I [Escherichia coli O111:H8 str. CVM9574]
gi|388422498|gb|EIL82076.1| DNA polymerase I [Escherichia coli CUMT8]
gi|391301185|gb|EIQ59083.1| DNA polymerase I [Escherichia coli EPECa12]
gi|394383854|gb|EJE61437.1| DNA polymerase I [Escherichia coli O111:H8 str. CVM9634]
gi|394389341|gb|EJE66487.1| DNA polymerase I [Escherichia coli O111:H8 str. CVM9602]
gi|412965236|emb|CCK49167.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Escherichia coli chi7122]
gi|412971822|emb|CCJ46488.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Escherichia coli]
gi|421944849|gb|EKU02089.1| DNA polymerase I [Escherichia coli O111:H8 str. CFSAN001632]
gi|431359458|gb|ELG46095.1| DNA polymerase I [Escherichia coli KTE101]
gi|431476197|gb|ELH55991.1| DNA polymerase I [Escherichia coli KTE203]
gi|431641856|gb|ELJ09589.1| DNA polymerase I [Escherichia coli KTE163]
gi|431652854|gb|ELJ19974.1| DNA polymerase I [Escherichia coli KTE166]
gi|443419847|gb|AGC84751.1| DNA polymerase I [Escherichia coli APEC O78]
gi|449313460|gb|EMD03669.1| DNA polymerase I [Escherichia coli O08]
Length = 928
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
gi|415786131|ref|ZP_11493377.1| DNA polymerase I [Escherichia coli EPECa14]
gi|419257347|ref|ZP_13799845.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC10A]
gi|419269345|ref|ZP_13811687.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC10C]
gi|419876840|ref|ZP_14398510.1| DNA polymerase I [Escherichia coli O111:H11 str. CVM9534]
gi|419879979|ref|ZP_14401396.1| DNA polymerase I [Escherichia coli O111:H11 str. CVM9545]
gi|419904106|ref|ZP_14423113.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM9942]
gi|419909427|ref|ZP_14428006.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM10026]
gi|420111695|ref|ZP_14621518.1| DNA polymerase I [Escherichia coli O111:H11 str. CVM9553]
gi|420116411|ref|ZP_14625821.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM10021]
gi|420122742|ref|ZP_14631652.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM10030]
gi|420128758|ref|ZP_14637307.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM10224]
gi|420134725|ref|ZP_14642827.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM9952]
gi|424753467|ref|ZP_18181422.1| DNA polymerase I [Escherichia coli O26:H11 str. CFSAN001629]
gi|424759275|ref|ZP_18186943.1| DNA polymerase I [Escherichia coli O111:H11 str. CFSAN001630]
gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14]
gi|378097212|gb|EHW58971.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC10A]
gi|378107116|gb|EHW68738.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC10C]
gi|388342244|gb|EIL08291.1| DNA polymerase I [Escherichia coli O111:H11 str. CVM9534]
gi|388368261|gb|EIL31903.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM9942]
gi|388370216|gb|EIL33756.1| DNA polymerase I [Escherichia coli O111:H11 str. CVM9545]
gi|388373169|gb|EIL36503.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM10026]
gi|394384726|gb|EJE62281.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM10224]
gi|394397973|gb|EJE74195.1| DNA polymerase I [Escherichia coli O111:H11 str. CVM9553]
gi|394403734|gb|EJE79273.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM10021]
gi|394418394|gb|EJE92070.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM10030]
gi|394421114|gb|EJE94603.1| DNA polymerase I [Escherichia coli O26:H11 str. CVM9952]
gi|421935239|gb|EKT92932.1| DNA polymerase I [Escherichia coli O26:H11 str. CFSAN001629]
gi|421947453|gb|EKU04527.1| DNA polymerase I [Escherichia coli O111:H11 str. CFSAN001630]
Length = 928
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 929
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 125/289 (43%), Positives = 177/289 (61%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEATGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YKA R MP +L QI +HQMVKA+G P+L + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFENYKAHRPPMPEDLREQIEPLHQMVKAMGLPLLAVSGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGKPVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ N + I G+ + R A PKL+
Sbjct: 185 DASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGL---SFRGAKTMAPKLEQHKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + + L + D L +LF++Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELSC----DQLTVNELDVDELHRLFSRYEFKR 286
>gi|422976191|ref|ZP_16977027.1| DNA polymerase I [Escherichia coli TA124]
gi|371594184|gb|EHN83055.1| DNA polymerase I [Escherichia coli TA124]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206]
gi|422367992|ref|ZP_16448412.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
gi|432901529|ref|ZP_20111548.1| DNA polymerase I [Escherichia coli KTE192]
gi|433030822|ref|ZP_20218664.1| DNA polymerase I [Escherichia coli KTE109]
gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206]
gi|431421282|gb|ELH03495.1| DNA polymerase I [Escherichia coli KTE192]
gi|431539828|gb|ELI15466.1| DNA polymerase I [Escherichia coli KTE109]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301]
gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5
exonuclease [Shigella flexneri 2a str. 301]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|416298142|ref|ZP_11651859.1| DNA polymerase I [Shigella flexneri CDC 796-83]
gi|420327809|ref|ZP_14829548.1| DNA polymerase I [Shigella flexneri CCH060]
gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83]
gi|391246194|gb|EIQ05456.1| DNA polymerase I [Shigella flexneri CCH060]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299]
gi|450195819|ref|ZP_21892662.1| DNA polymerase I [Escherichia coli SEPT362]
gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299]
gi|449315924|gb|EMD06050.1| DNA polymerase I [Escherichia coli SEPT362]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026]
gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412]
gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302]
gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
gi|419931853|ref|ZP_14449226.1| DNA polymerase I [Escherichia coli 576-1]
gi|422334909|ref|ZP_16415913.1| DNA polymerase I [Escherichia coli 4_1_47FAA]
gi|432355894|ref|ZP_19599153.1| DNA polymerase I [Escherichia coli KTE2]
gi|432404259|ref|ZP_19647000.1| DNA polymerase I [Escherichia coli KTE26]
gi|432428526|ref|ZP_19671004.1| DNA polymerase I [Escherichia coli KTE181]
gi|432463227|ref|ZP_19705356.1| DNA polymerase I [Escherichia coli KTE204]
gi|432478222|ref|ZP_19720205.1| DNA polymerase I [Escherichia coli KTE208]
gi|432491694|ref|ZP_19733551.1| DNA polymerase I [Escherichia coli KTE213]
gi|432520075|ref|ZP_19757252.1| DNA polymerase I [Escherichia coli KTE228]
gi|432540243|ref|ZP_19777132.1| DNA polymerase I [Escherichia coli KTE235]
gi|432633807|ref|ZP_19869722.1| DNA polymerase I [Escherichia coli KTE80]
gi|432643459|ref|ZP_19879278.1| DNA polymerase I [Escherichia coli KTE83]
gi|432663581|ref|ZP_19899189.1| DNA polymerase I [Escherichia coli KTE116]
gi|432768236|ref|ZP_20002625.1| DNA polymerase I [Escherichia coli KTE50]
gi|432772636|ref|ZP_20006945.1| DNA polymerase I [Escherichia coli KTE54]
gi|432841719|ref|ZP_20075172.1| DNA polymerase I [Escherichia coli KTE140]
gi|432882609|ref|ZP_20098331.1| DNA polymerase I [Escherichia coli KTE158]
gi|432915527|ref|ZP_20120782.1| DNA polymerase I [Escherichia coli KTE190]
gi|432964712|ref|ZP_20153737.1| DNA polymerase I [Escherichia coli KTE202]
gi|433021116|ref|ZP_20209190.1| DNA polymerase I [Escherichia coli KTE105]
gi|433055490|ref|ZP_20242640.1| DNA polymerase I [Escherichia coli KTE122]
gi|433065332|ref|ZP_20252231.1| DNA polymerase I [Escherichia coli KTE125]
gi|433070226|ref|ZP_20256985.1| DNA polymerase I [Escherichia coli KTE128]
gi|433161016|ref|ZP_20345828.1| DNA polymerase I [Escherichia coli KTE177]
gi|433180735|ref|ZP_20365104.1| DNA polymerase I [Escherichia coli KTE82]
gi|433205616|ref|ZP_20389355.1| DNA polymerase I [Escherichia coli KTE95]
gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli UMN026]
gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412]
gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302]
gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
gi|373244191|gb|EHP63681.1| DNA polymerase I [Escherichia coli 4_1_47FAA]
gi|388420338|gb|EIL80034.1| DNA polymerase I [Escherichia coli 576-1]
gi|430871724|gb|ELB95351.1| DNA polymerase I [Escherichia coli KTE2]
gi|430922333|gb|ELC43089.1| DNA polymerase I [Escherichia coli KTE26]
gi|430950049|gb|ELC69440.1| DNA polymerase I [Escherichia coli KTE181]
gi|430984932|gb|ELD01542.1| DNA polymerase I [Escherichia coli KTE204]
gi|431001523|gb|ELD17104.1| DNA polymerase I [Escherichia coli KTE208]
gi|431016941|gb|ELD30460.1| DNA polymerase I [Escherichia coli KTE213]
gi|431047187|gb|ELD57192.1| DNA polymerase I [Escherichia coli KTE228]
gi|431066391|gb|ELD75020.1| DNA polymerase I [Escherichia coli KTE235]
gi|431166622|gb|ELE66929.1| DNA polymerase I [Escherichia coli KTE80]
gi|431176614|gb|ELE76557.1| DNA polymerase I [Escherichia coli KTE83]
gi|431206194|gb|ELF04619.1| DNA polymerase I [Escherichia coli KTE116]
gi|431321500|gb|ELG09101.1| DNA polymerase I [Escherichia coli KTE50]
gi|431323058|gb|ELG10611.1| DNA polymerase I [Escherichia coli KTE54]
gi|431384771|gb|ELG68773.1| DNA polymerase I [Escherichia coli KTE140]
gi|431422951|gb|ELH05081.1| DNA polymerase I [Escherichia coli KTE158]
gi|431435129|gb|ELH16742.1| DNA polymerase I [Escherichia coli KTE190]
gi|431467009|gb|ELH47021.1| DNA polymerase I [Escherichia coli KTE202]
gi|431526282|gb|ELI03039.1| DNA polymerase I [Escherichia coli KTE105]
gi|431565150|gb|ELI38292.1| DNA polymerase I [Escherichia coli KTE122]
gi|431577389|gb|ELI50024.1| DNA polymerase I [Escherichia coli KTE125]
gi|431578256|gb|ELI50867.1| DNA polymerase I [Escherichia coli KTE128]
gi|431672917|gb|ELJ39150.1| DNA polymerase I [Escherichia coli KTE177]
gi|431697508|gb|ELJ62617.1| DNA polymerase I [Escherichia coli KTE82]
gi|431715344|gb|ELJ79509.1| DNA polymerase I [Escherichia coli KTE95]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
exonuclease [Escherichia coli str. K-12 substr. MG1655]
gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046]
gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A]
gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739]
gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94]
gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638]
gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A]
gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22]
gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019]
gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171]
gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1]
gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11]
gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1]
gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989]
gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952]
gi|251787128|ref|YP_003001432.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Escherichia coli BL21(DE3)]
gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606]
gi|254290565|ref|YP_003056313.1| DNA polymerase I [Escherichia coli BL21(DE3)]
gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088]
gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736]
gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718]
gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271]
gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280]
gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591]
gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Shigella sp. D9]
gi|383181120|ref|YP_005459125.1| DNA polymerase I [Shigella sonnei 53G]
gi|386282476|ref|ZP_10060127.1| DNA polymerase I [Escherichia sp. 4_1_40B]
gi|386597612|ref|YP_006094012.1| DNA polymerase I [Escherichia coli DH1]
gi|387623508|ref|YP_006131136.1| DNA polymerase I [Escherichia coli DH1]
gi|388479394|ref|YP_491586.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
3'->5' exonuclease [Escherichia coli str. K-12 substr.
W3110]
gi|415799665|ref|ZP_11498922.1| DNA polymerase I [Escherichia coli E128010]
gi|415810400|ref|ZP_11502807.1| DNA polymerase I [Escherichia coli LT-68]
gi|415838362|ref|ZP_11520340.1| DNA polymerase I [Escherichia coli RN587/1]
gi|415876603|ref|ZP_11542985.1| DNA polymerase I [Escherichia coli MS 79-10]
gi|416269221|ref|ZP_11642393.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
gi|417121886|ref|ZP_11971259.1| DNA-directed DNA polymerase [Escherichia coli 97.0246]
gi|417132273|ref|ZP_11977058.1| DNA-directed DNA polymerase [Escherichia coli 5.0588]
gi|417148809|ref|ZP_11988900.1| DNA-directed DNA polymerase [Escherichia coli 1.2264]
gi|417157845|ref|ZP_11995469.1| DNA-directed DNA polymerase [Escherichia coli 96.0497]
gi|417161211|ref|ZP_11997544.1| DNA-directed DNA polymerase [Escherichia coli 99.0741]
gi|417175027|ref|ZP_12004823.1| DNA-directed DNA polymerase [Escherichia coli 3.2608]
gi|417185465|ref|ZP_12010866.1| DNA-directed DNA polymerase [Escherichia coli 93.0624]
gi|417222352|ref|ZP_12025792.1| DNA-directed DNA polymerase [Escherichia coli 96.154]
gi|417241761|ref|ZP_12037518.1| DNA-directed DNA polymerase [Escherichia coli 9.0111]
gi|417249349|ref|ZP_12041133.1| DNA-directed DNA polymerase [Escherichia coli 4.0967]
gi|417273368|ref|ZP_12060715.1| DNA-directed DNA polymerase [Escherichia coli 2.4168]
gi|417279156|ref|ZP_12066466.1| DNA-directed DNA polymerase [Escherichia coli 3.2303]
gi|417281688|ref|ZP_12068988.1| DNA-directed DNA polymerase [Escherichia coli 3003]
gi|417293514|ref|ZP_12080793.1| DNA-directed DNA polymerase [Escherichia coli B41]
gi|417599297|ref|ZP_12249921.1| DNA polymerase I [Escherichia coli 3030-1]
gi|417604764|ref|ZP_12255325.1| DNA polymerase I [Escherichia coli STEC_94C]
gi|417615522|ref|ZP_12265969.1| DNA polymerase I [Escherichia coli STEC_EH250]
gi|417626036|ref|ZP_12276323.1| DNA polymerase I [Escherichia coli STEC_H.1.8]
gi|417636816|ref|ZP_12287020.1| DNA polymerase I [Escherichia coli STEC_S1191]
gi|417669451|ref|ZP_12318986.1| DNA polymerase I [Escherichia coli STEC_O31]
gi|417944988|ref|ZP_12588226.1| DNA polymerase I [Escherichia coli XH140A]
gi|417976886|ref|ZP_12617676.1| DNA polymerase I [Escherichia coli XH001]
gi|418305488|ref|ZP_12917282.1| DNA polymerase I [Escherichia coli UMNF18]
gi|418943606|ref|ZP_13496778.1| DNA polymerase I [Escherichia coli O157:H43 str. T22]
gi|418960257|ref|ZP_13512150.1| DNA-directed DNA polymerase [Escherichia coli J53]
gi|419144967|ref|ZP_13689692.1| DNA polymerase I [Escherichia coli DEC6A]
gi|419150986|ref|ZP_13695630.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC6B]
gi|419156374|ref|ZP_13700926.1| DNA polymerase I [Escherichia coli DEC6C]
gi|419177643|ref|ZP_13721448.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC7B]
gi|419292076|ref|ZP_13834157.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC11A]
gi|419297355|ref|ZP_13839388.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC11B]
gi|419302947|ref|ZP_13844936.1| DNA polymerase I [Escherichia coli DEC11C]
gi|419308892|ref|ZP_13850779.1| DNA polymerase I [Escherichia coli DEC11D]
gi|419313857|ref|ZP_13855711.1| DNA polymerase I [Escherichia coli DEC11E]
gi|419319356|ref|ZP_13861149.1| DNA polymerase I [Escherichia coli DEC12A]
gi|419325305|ref|ZP_13866990.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12B]
gi|419331576|ref|ZP_13873166.1| DNA polymerase I [Escherichia coli DEC12C]
gi|419336747|ref|ZP_13878260.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12D]
gi|419342444|ref|ZP_13883895.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12E]
gi|419393813|ref|ZP_13934612.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15A]
gi|419399255|ref|ZP_13940013.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15B]
gi|419404501|ref|ZP_13945216.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15C]
gi|419409666|ref|ZP_13950346.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15D]
gi|419415224|ref|ZP_13955853.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15E]
gi|419804621|ref|ZP_14329775.1| DNA-directed DNA polymerase [Escherichia coli AI27]
gi|419812011|ref|ZP_14336882.1| DNA polymerase I [Escherichia coli O32:H37 str. P4]
gi|419866526|ref|ZP_14388885.1| DNA polymerase I [Escherichia coli O103:H25 str. CVM9340]
gi|419871483|ref|ZP_14393539.1| DNA polymerase I [Escherichia coli O103:H2 str. CVM9450]
gi|419927717|ref|ZP_14445450.1| DNA polymerase I [Escherichia coli 541-1]
gi|419938064|ref|ZP_14454907.1| DNA polymerase I [Escherichia coli 75]
gi|420361304|ref|ZP_14862244.1| DNA polymerase I [Shigella sonnei 3226-85]
gi|420393995|ref|ZP_14893238.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli EPEC C342-62]
gi|421684781|ref|ZP_16124563.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri 1485-80]
gi|421777457|ref|ZP_16214053.1| DNA-directed DNA polymerase [Escherichia coli AD30]
gi|422352191|ref|ZP_16432985.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
gi|422773743|ref|ZP_16827425.1| DNA polymerase I [Escherichia coli E482]
gi|422789071|ref|ZP_16841804.1| DNA polymerase I [Escherichia coli H489]
gi|422793704|ref|ZP_16846398.1| DNA polymerase I [Escherichia coli TA007]
gi|422819009|ref|ZP_16867221.1| DNA polymerase I [Escherichia coli M919]
gi|422832065|ref|ZP_16880190.1| DNA polymerase I [Escherichia coli B093]
gi|423703380|ref|ZP_17677812.1| DNA polymerase I [Escherichia coli H730]
gi|423708167|ref|ZP_17682547.1| DNA polymerase I [Escherichia coli B799]
gi|425122204|ref|ZP_18523872.1| DNA polymerase I [Escherichia coli 8.0569]
gi|425291075|ref|ZP_18681881.1| DNA polymerase I [Escherichia coli 3006]
gi|432379093|ref|ZP_19622073.1| DNA polymerase I [Escherichia coli KTE12]
gi|432394529|ref|ZP_19637344.1| DNA polymerase I [Escherichia coli KTE21]
gi|432483272|ref|ZP_19725218.1| DNA polymerase I [Escherichia coli KTE210]
gi|432528715|ref|ZP_19765785.1| DNA polymerase I [Escherichia coli KTE233]
gi|432531649|ref|ZP_19768670.1| DNA polymerase I [Escherichia coli KTE234]
gi|432545697|ref|ZP_19782518.1| DNA polymerase I [Escherichia coli KTE236]
gi|432551175|ref|ZP_19787922.1| DNA polymerase I [Escherichia coli KTE237]
gi|432624231|ref|ZP_19860242.1| DNA polymerase I [Escherichia coli KTE76]
gi|432629480|ref|ZP_19865443.1| DNA polymerase I [Escherichia coli KTE77]
gi|432634762|ref|ZP_19870658.1| DNA polymerase I [Escherichia coli KTE81]
gi|432663105|ref|ZP_19898732.1| DNA polymerase I [Escherichia coli KTE111]
gi|432672950|ref|ZP_19908466.1| DNA polymerase I [Escherichia coli KTE119]
gi|432677037|ref|ZP_19912476.1| DNA polymerase I [Escherichia coli KTE142]
gi|432689186|ref|ZP_19924450.1| DNA polymerase I [Escherichia coli KTE161]
gi|432706590|ref|ZP_19941682.1| DNA polymerase I [Escherichia coli KTE171]
gi|432734904|ref|ZP_19969717.1| DNA polymerase I [Escherichia coli KTE42]
gi|432752313|ref|ZP_19986889.1| DNA polymerase I [Escherichia coli KTE29]
gi|432762720|ref|ZP_19997180.1| DNA polymerase I [Escherichia coli KTE48]
gi|432808104|ref|ZP_20042015.1| DNA polymerase I [Escherichia coli KTE91]
gi|432829476|ref|ZP_20063089.1| DNA polymerase I [Escherichia coli KTE135]
gi|432836870|ref|ZP_20070379.1| DNA polymerase I [Escherichia coli KTE136]
gi|432931655|ref|ZP_20131634.1| DNA polymerase I [Escherichia coli KTE184]
gi|432943551|ref|ZP_20140386.1| DNA polymerase I [Escherichia coli KTE196]
gi|432951137|ref|ZP_20144857.1| DNA polymerase I [Escherichia coli KTE197]
gi|433045393|ref|ZP_20232864.1| DNA polymerase I [Escherichia coli KTE117]
gi|433094254|ref|ZP_20280500.1| DNA polymerase I [Escherichia coli KTE138]
gi|433195916|ref|ZP_20379880.1| DNA polymerase I [Escherichia coli KTE90]
gi|442595830|ref|ZP_21013666.1| DNA polymerase I [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442598570|ref|ZP_21016330.1| DNA polymerase I [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|450253059|ref|ZP_21902332.1| DNA polymerase I [Escherichia coli S17]
gi|118825|sp|P00582.1|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I
gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli]
gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655]
gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
exonuclease [Escherichia coli str. K-12 substr. MG1655]
gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046]
gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
3'->5' exonuclease [Escherichia coli str. K12 substr.
W3110]
gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A]
gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739]
gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94]
gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638]
gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A]
gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22]
gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019]
gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171]
gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1]
gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11]
gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli 55989]
gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia coli IAI1]
gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952]
gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
exonuclease [Escherichia coli BL21(DE3)]
gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606]
gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)]
gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1]
gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088]
gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1]
gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010]
gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68]
gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1]
gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482]
gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489]
gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007]
gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736]
gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718]
gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271]
gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280]
gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591]
gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Shigella sp. D9]
gi|339417586|gb|AEJ59258.1| DNA polymerase I [Escherichia coli UMNF18]
gi|342363371|gb|EGU27480.1| DNA polymerase I [Escherichia coli XH140A]
gi|342928542|gb|EGU97264.1| DNA polymerase I [Escherichia coli MS 79-10]
gi|344193570|gb|EGV47650.1| DNA polymerase I [Escherichia coli XH001]
gi|345346869|gb|EGW79186.1| DNA polymerase I [Escherichia coli STEC_94C]
gi|345348793|gb|EGW81086.1| DNA polymerase I [Escherichia coli 3030-1]
gi|345357418|gb|EGW89613.1| DNA polymerase I [Escherichia coli STEC_EH250]
gi|345371340|gb|EGX03310.1| DNA polymerase I [Escherichia coli STEC_H.1.8]
gi|345384637|gb|EGX14498.1| DNA polymerase I [Escherichia coli STEC_S1191]
gi|359333988|dbj|BAL40435.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Escherichia coli str. K-12 substr. MDS42]
gi|371615784|gb|EHO04170.1| DNA polymerase I [Escherichia coli B093]
gi|375321086|gb|EHS66959.1| DNA polymerase I [Escherichia coli O157:H43 str. T22]
gi|377988276|gb|EHV51455.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC6B]
gi|377988817|gb|EHV51988.1| DNA polymerase I [Escherichia coli DEC6A]
gi|377991817|gb|EHV54966.1| DNA polymerase I [Escherichia coli DEC6C]
gi|378028339|gb|EHV90958.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC7B]
gi|378124368|gb|EHW85776.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC11A]
gi|378137843|gb|EHW99105.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC11B]
gi|378143858|gb|EHX05039.1| DNA polymerase I [Escherichia coli DEC11D]
gi|378145657|gb|EHX06814.1| DNA polymerase I [Escherichia coli DEC11C]
gi|378154412|gb|EHX15486.1| DNA polymerase I [Escherichia coli DEC11E]
gi|378161850|gb|EHX22824.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12B]
gi|378164380|gb|EHX25325.1| DNA polymerase I [Escherichia coli DEC12A]
gi|378165175|gb|EHX26112.1| DNA polymerase I [Escherichia coli DEC12C]
gi|378179479|gb|EHX40205.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12D]
gi|378182119|gb|EHX42773.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC12E]
gi|378234204|gb|EHX94283.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15A]
gi|378239748|gb|EHX99727.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15B]
gi|378242417|gb|EHY02370.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15C]
gi|378250296|gb|EHY10201.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15D]
gi|378254981|gb|EHY14840.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC15E]
gi|384377072|gb|EIE34970.1| DNA-directed DNA polymerase [Escherichia coli J53]
gi|384472339|gb|EIE56396.1| DNA-directed DNA polymerase [Escherichia coli AI27]
gi|385155230|gb|EIF17235.1| DNA polymerase I [Escherichia coli O32:H37 str. P4]
gi|385537437|gb|EIF84309.1| DNA polymerase I [Escherichia coli M919]
gi|385708228|gb|EIG45242.1| DNA polymerase I [Escherichia coli H730]
gi|385709080|gb|EIG46082.1| DNA polymerase I [Escherichia coli B799]
gi|386120525|gb|EIG69151.1| DNA polymerase I [Escherichia sp. 4_1_40B]
gi|386147961|gb|EIG94400.1| DNA-directed DNA polymerase [Escherichia coli 97.0246]
gi|386150127|gb|EIH01416.1| DNA-directed DNA polymerase [Escherichia coli 5.0588]
gi|386161030|gb|EIH22833.1| DNA-directed DNA polymerase [Escherichia coli 1.2264]
gi|386166595|gb|EIH33115.1| DNA-directed DNA polymerase [Escherichia coli 96.0497]
gi|386174350|gb|EIH46350.1| DNA-directed DNA polymerase [Escherichia coli 99.0741]
gi|386177719|gb|EIH55198.1| DNA-directed DNA polymerase [Escherichia coli 3.2608]
gi|386182765|gb|EIH65521.1| DNA-directed DNA polymerase [Escherichia coli 93.0624]
gi|386202154|gb|EII01145.1| DNA-directed DNA polymerase [Escherichia coli 96.154]
gi|386211878|gb|EII22329.1| DNA-directed DNA polymerase [Escherichia coli 9.0111]
gi|386219670|gb|EII36134.1| DNA-directed DNA polymerase [Escherichia coli 4.0967]
gi|386234545|gb|EII66523.1| DNA-directed DNA polymerase [Escherichia coli 2.4168]
gi|386237933|gb|EII74873.1| DNA-directed DNA polymerase [Escherichia coli 3.2303]
gi|386246017|gb|EII87747.1| DNA-directed DNA polymerase [Escherichia coli 3003]
gi|386251702|gb|EIJ01394.1| DNA-directed DNA polymerase [Escherichia coli B41]
gi|388334861|gb|EIL01442.1| DNA polymerase I [Escherichia coli O103:H25 str. CVM9340]
gi|388337025|gb|EIL03541.1| DNA polymerase I [Escherichia coli O103:H2 str. CVM9450]
gi|388406870|gb|EIL67252.1| DNA polymerase I [Escherichia coli 541-1]
gi|388410987|gb|EIL71180.1| DNA polymerase I [Escherichia coli 75]
gi|391277164|gb|EIQ35915.1| DNA polymerase I [Shigella sonnei 3226-85]
gi|391309398|gb|EIQ67068.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli EPEC C342-62]
gi|397782928|gb|EJK93791.1| DNA polymerase I [Escherichia coli STEC_O31]
gi|404335843|gb|EJZ62311.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri 1485-80]
gi|408208645|gb|EKI33277.1| DNA polymerase I [Escherichia coli 3006]
gi|408457555|gb|EKJ81350.1| DNA-directed DNA polymerase [Escherichia coli AD30]
gi|408563865|gb|EKK39986.1| DNA polymerase I [Escherichia coli 8.0569]
gi|430895602|gb|ELC17864.1| DNA polymerase I [Escherichia coli KTE12]
gi|430913383|gb|ELC34505.1| DNA polymerase I [Escherichia coli KTE21]
gi|431003008|gb|ELD18495.1| DNA polymerase I [Escherichia coli KTE210]
gi|431059830|gb|ELD69177.1| DNA polymerase I [Escherichia coli KTE233]
gi|431066733|gb|ELD75356.1| DNA polymerase I [Escherichia coli KTE234]
gi|431070211|gb|ELD78517.1| DNA polymerase I [Escherichia coli KTE236]
gi|431075321|gb|ELD82843.1| DNA polymerase I [Escherichia coli KTE237]
gi|431155378|gb|ELE56134.1| DNA polymerase I [Escherichia coli KTE76]
gi|431159909|gb|ELE60452.1| DNA polymerase I [Escherichia coli KTE77]
gi|431175768|gb|ELE75758.1| DNA polymerase I [Escherichia coli KTE81]
gi|431196545|gb|ELE95471.1| DNA polymerase I [Escherichia coli KTE111]
gi|431207064|gb|ELF05372.1| DNA polymerase I [Escherichia coli KTE119]
gi|431209703|gb|ELF07774.1| DNA polymerase I [Escherichia coli KTE142]
gi|431234211|gb|ELF29618.1| DNA polymerase I [Escherichia coli KTE161]
gi|431239775|gb|ELF34245.1| DNA polymerase I [Escherichia coli KTE171]
gi|431289832|gb|ELF80563.1| DNA polymerase I [Escherichia coli KTE42]
gi|431293243|gb|ELF83623.1| DNA polymerase I [Escherichia coli KTE29]
gi|431315051|gb|ELG02979.1| DNA polymerase I [Escherichia coli KTE48]
gi|431352273|gb|ELG39051.1| DNA polymerase I [Escherichia coli KTE91]
gi|431380854|gb|ELG65490.1| DNA polymerase I [Escherichia coli KTE136]
gi|431381789|gb|ELG66140.1| DNA polymerase I [Escherichia coli KTE135]
gi|431458841|gb|ELH39160.1| DNA polymerase I [Escherichia coli KTE184]
gi|431466770|gb|ELH46787.1| DNA polymerase I [Escherichia coli KTE196]
gi|431477121|gb|ELH56892.1| DNA polymerase I [Escherichia coli KTE197]
gi|431551890|gb|ELI25854.1| DNA polymerase I [Escherichia coli KTE117]
gi|431606368|gb|ELI75745.1| DNA polymerase I [Escherichia coli KTE138]
gi|431712800|gb|ELJ77077.1| DNA polymerase I [Escherichia coli KTE90]
gi|441603992|emb|CCP98800.1| DNA polymerase I [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441652787|emb|CCQ04105.1| DNA polymerase I [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|449314085|gb|EMD04264.1| DNA polymerase I [Escherichia coli S17]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|432604690|ref|ZP_19840915.1| DNA polymerase I [Escherichia coli KTE66]
gi|431136420|gb|ELE38288.1| DNA polymerase I [Escherichia coli KTE66]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|432566241|ref|ZP_19802795.1| DNA polymerase I [Escherichia coli KTE51]
gi|431089336|gb|ELD95155.1| DNA polymerase I [Escherichia coli KTE51]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|419702721|ref|ZP_14230308.1| DNA polymerase I [Escherichia coli SCI-07]
gi|380346091|gb|EIA34392.1| DNA polymerase I [Escherichia coli SCI-07]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|417829955|ref|ZP_12476495.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri J1713]
gi|420322608|ref|ZP_14824428.1| DNA polymerase I [Shigella flexneri 2850-71]
gi|335573637|gb|EGM59988.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri J1713]
gi|391245345|gb|EIQ04618.1| DNA polymerase I [Shigella flexneri 2850-71]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|417714586|ref|ZP_12363539.1| DNA polymerase I [Shigella flexneri K-272]
gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|444376048|ref|ZP_21175297.1| DNA polymerase I [Enterovibrio sp. AK16]
gi|443679819|gb|ELT86470.1| DNA polymerase I [Enterovibrio sp. AK16]
Length = 931
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 121/288 (42%), Positives = 175/288 (60%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA++A P++ N + P GA+YG + MLR L K Y +++A IFDAKG
Sbjct: 7 NPLILVDGSSYLYRAYHASPNLTNANGEPTGAVYGVVNMLRSLVKQYPQSHVAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP +L QI +HQ+++A+G+P+L+I+GVEADDVIGTLA Q
Sbjct: 67 KTFRDDMYAEYKAHRPPMPDDLRSQIAPLHQIIEAMGFPMLVIEGVEADDVIGTLAVQG- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + ++IST DKDMAQLV + LIN N I + ++G PE I+DY +L+GD
Sbjct: 126 SKAGMPILISTGDKDMAQLVDENVTLINTMTNVIMTPQGVHDKYGFGPEHIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA L+ L+ + +N + I + + R + KL+
Sbjct: 186 KVDNIPGVPGVGEKTATALIAGIGGLDALYDNLDKIADL---SFRGSKTMAKKLEDNKEN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK DC+L PE LI + D L++LF + +
Sbjct: 243 AYLSYQLATIKLDCELPFK----PEELINRSADNDKLVELFTELNFKR 286
>gi|432866921|ref|ZP_20089072.1| DNA polymerase I [Escherichia coli KTE146]
gi|431400647|gb|ELG84014.1| DNA polymerase I [Escherichia coli KTE146]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|432855927|ref|ZP_20083551.1| DNA polymerase I [Escherichia coli KTE144]
gi|431396612|gb|ELG80089.1| DNA polymerase I [Escherichia coli KTE144]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|432716490|ref|ZP_19951502.1| DNA polymerase I [Escherichia coli KTE9]
gi|432795121|ref|ZP_20029191.1| DNA polymerase I [Escherichia coli KTE78]
gi|432796632|ref|ZP_20030664.1| DNA polymerase I [Escherichia coli KTE79]
gi|431269612|gb|ELF60918.1| DNA polymerase I [Escherichia coli KTE9]
gi|431335078|gb|ELG22220.1| DNA polymerase I [Escherichia coli KTE78]
gi|431347590|gb|ELG34473.1| DNA polymerase I [Escherichia coli KTE79]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|432687688|ref|ZP_19922974.1| DNA polymerase I [Escherichia coli KTE156]
gi|431218790|gb|ELF16222.1| DNA polymerase I [Escherichia coli KTE156]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHTMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|418259220|ref|ZP_12882222.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri 6603-63]
gi|397894872|gb|EJL11312.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Shigella flexneri 6603-63]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
gi|419921133|ref|ZP_14439228.1| DNA polymerase I [Escherichia coli KD2]
gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
gi|388383196|gb|EIL44983.1| DNA polymerase I [Escherichia coli KD2]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|387609665|ref|YP_006098521.1| DNA polymerase I [Escherichia coli 042]
gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|387831769|ref|YP_003351706.1| DNA polymerase I [Escherichia coli SE15]
gi|417142077|ref|ZP_11984652.1| DNA-directed DNA polymerase [Escherichia coli 97.0259]
gi|417311422|ref|ZP_12098158.1| DNA polymerase I [Escherichia coli PCN033]
gi|432502435|ref|ZP_19744182.1| DNA polymerase I [Escherichia coli KTE216]
gi|432696743|ref|ZP_19931932.1| DNA polymerase I [Escherichia coli KTE162]
gi|432923158|ref|ZP_20125853.1| DNA polymerase I [Escherichia coli KTE173]
gi|432929913|ref|ZP_20130789.1| DNA polymerase I [Escherichia coli KTE175]
gi|432983401|ref|ZP_20172150.1| DNA polymerase I [Escherichia coli KTE211]
gi|433098708|ref|ZP_20284871.1| DNA polymerase I [Escherichia coli KTE139]
gi|433108140|ref|ZP_20294095.1| DNA polymerase I [Escherichia coli KTE148]
gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15]
gi|338766999|gb|EGP21883.1| DNA polymerase I [Escherichia coli PCN033]
gi|386155101|gb|EIH11456.1| DNA-directed DNA polymerase [Escherichia coli 97.0259]
gi|431025507|gb|ELD38609.1| DNA polymerase I [Escherichia coli KTE216]
gi|431230514|gb|ELF26293.1| DNA polymerase I [Escherichia coli KTE162]
gi|431434104|gb|ELH15756.1| DNA polymerase I [Escherichia coli KTE173]
gi|431439286|gb|ELH20621.1| DNA polymerase I [Escherichia coli KTE175]
gi|431486754|gb|ELH66400.1| DNA polymerase I [Escherichia coli KTE211]
gi|431611837|gb|ELI81100.1| DNA polymerase I [Escherichia coli KTE139]
gi|431623190|gb|ELI91864.1| DNA polymerase I [Escherichia coli KTE148]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|222158571|ref|YP_002558710.1| DNA polymerase I [Escherichia coli LF82]
gi|387619172|ref|YP_006122194.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82]
gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000]
gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966]
gi|386616683|ref|YP_006136349.1| DNA polymerase I PolA [Escherichia coli UMNK88]
gi|387509307|ref|YP_006161563.1| DNA polymerase I [Escherichia coli O55:H7 str. RM12579]
gi|387614553|ref|YP_006117669.1| DNA polymerase I [Escherichia coli ETEC H10407]
gi|387885085|ref|YP_006315387.1| DNA polymerase I [Escherichia coli Xuzhou21]
gi|404377251|ref|ZP_10982388.1| DNA polymerase I [Escherichia sp. 1_1_43]
gi|416315402|ref|ZP_11659340.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
gi|416319691|ref|ZP_11662243.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
gi|416327969|ref|ZP_11667838.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
gi|416790193|ref|ZP_11881030.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
gi|416812817|ref|ZP_11890840.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97]
gi|416823301|ref|ZP_11895457.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
gi|416833614|ref|ZP_11900452.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
gi|419047993|ref|ZP_13594921.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3A]
gi|419053738|ref|ZP_13600602.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3B]
gi|419059774|ref|ZP_13606571.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3C]
gi|419065163|ref|ZP_13611869.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3D]
gi|419078095|ref|ZP_13623590.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3F]
gi|419089167|ref|ZP_13634514.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4B]
gi|419095008|ref|ZP_13640281.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4C]
gi|419100900|ref|ZP_13646084.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4D]
gi|419106496|ref|ZP_13651616.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4E]
gi|419111890|ref|ZP_13656938.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4F]
gi|419117425|ref|ZP_13662430.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5A]
gi|419123152|ref|ZP_13668090.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5B]
gi|419128646|ref|ZP_13673513.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5C]
gi|419139223|ref|ZP_13684011.1| DNA polymerase I [Escherichia coli DEC5E]
gi|420277991|ref|ZP_14780268.1| DNA polymerase I [Escherichia coli PA40]
gi|420280179|ref|ZP_14782432.1| DNA polymerase I [Escherichia coli TW06591]
gi|420289423|ref|ZP_14791602.1| DNA polymerase I [Escherichia coli TW10246]
gi|420295048|ref|ZP_14797154.1| DNA polymerase I [Escherichia coli TW11039]
gi|420300999|ref|ZP_14803039.1| DNA polymerase I [Escherichia coli TW09109]
gi|420306942|ref|ZP_14808926.1| DNA polymerase I [Escherichia coli TW10119]
gi|420312224|ref|ZP_14814148.1| DNA polymerase I [Escherichia coli EC1738]
gi|420318013|ref|ZP_14819880.1| DNA polymerase I [Escherichia coli EC1734]
gi|421814930|ref|ZP_16250627.1| DNA polymerase I [Escherichia coli 8.0416]
gi|421820663|ref|ZP_16256144.1| DNA polymerase I [Escherichia coli 10.0821]
gi|421826640|ref|ZP_16261991.1| DNA polymerase I [Escherichia coli FRIK920]
gi|421827511|ref|ZP_16262850.1| DNA polymerase I [Escherichia coli PA7]
gi|422768942|ref|ZP_16822665.1| DNA polymerase I [Escherichia coli E1520]
gi|424080193|ref|ZP_17817130.1| DNA polymerase I [Escherichia coli FDA505]
gi|424086588|ref|ZP_17823056.1| DNA polymerase I [Escherichia coli FDA517]
gi|424112525|ref|ZP_17846734.1| DNA polymerase I [Escherichia coli 93-001]
gi|424118459|ref|ZP_17852276.1| DNA polymerase I [Escherichia coli PA3]
gi|424124658|ref|ZP_17857937.1| DNA polymerase I [Escherichia coli PA5]
gi|424150061|ref|ZP_17881419.1| DNA polymerase I [Escherichia coli PA15]
gi|424163789|ref|ZP_17886839.1| DNA polymerase I [Escherichia coli PA24]
gi|424489790|ref|ZP_17938309.1| DNA polymerase I [Escherichia coli TW09098]
gi|424496486|ref|ZP_17943998.1| DNA polymerase I [Escherichia coli TW09195]
gi|424509383|ref|ZP_17955732.1| DNA polymerase I [Escherichia coli EC4196]
gi|424516787|ref|ZP_17961353.1| DNA polymerase I [Escherichia coli TW14313]
gi|424553362|ref|ZP_17995171.1| DNA polymerase I [Escherichia coli EC4439]
gi|424559563|ref|ZP_18000939.1| DNA polymerase I [Escherichia coli EC4436]
gi|424565884|ref|ZP_18006869.1| DNA polymerase I [Escherichia coli EC4437]
gi|424583993|ref|ZP_18023622.1| DNA polymerase I [Escherichia coli EC1863]
gi|425100667|ref|ZP_18503386.1| DNA polymerase I [Escherichia coli 3.4870]
gi|425106741|ref|ZP_18509039.1| DNA polymerase I [Escherichia coli 5.2239]
gi|425134439|ref|ZP_18535274.1| DNA polymerase I [Escherichia coli 8.2524]
gi|425141033|ref|ZP_18541397.1| DNA polymerase I [Escherichia coli 10.0833]
gi|425152823|ref|ZP_18552420.1| DNA polymerase I [Escherichia coli 88.0221]
gi|425158722|ref|ZP_18557968.1| DNA polymerase I [Escherichia coli PA34]
gi|425195920|ref|ZP_18592674.1| DNA polymerase I [Escherichia coli NE1487]
gi|425208776|ref|ZP_18604557.1| DNA polymerase I [Escherichia coli FRIK2001]
gi|425227306|ref|ZP_18621756.1| DNA polymerase I [Escherichia coli PA49]
gi|425233463|ref|ZP_18627486.1| DNA polymerase I [Escherichia coli PA45]
gi|425239385|ref|ZP_18633089.1| DNA polymerase I [Escherichia coli TT12B]
gi|425245621|ref|ZP_18638911.1| DNA polymerase I [Escherichia coli MA6]
gi|425251815|ref|ZP_18644742.1| DNA polymerase I [Escherichia coli 5905]
gi|425257615|ref|ZP_18650093.1| DNA polymerase I [Escherichia coli CB7326]
gi|425263869|ref|ZP_18655844.1| DNA polymerase I [Escherichia coli EC96038]
gi|425269861|ref|ZP_18661471.1| DNA polymerase I [Escherichia coli 5412]
gi|425297333|ref|ZP_18687440.1| DNA polymerase I [Escherichia coli PA38]
gi|425314032|ref|ZP_18703182.1| DNA polymerase I [Escherichia coli EC1735]
gi|425320014|ref|ZP_18708774.1| DNA polymerase I [Escherichia coli EC1736]
gi|425326154|ref|ZP_18714463.1| DNA polymerase I [Escherichia coli EC1737]
gi|425338641|ref|ZP_18725963.1| DNA polymerase I [Escherichia coli EC1847]
gi|425344935|ref|ZP_18731807.1| DNA polymerase I [Escherichia coli EC1848]
gi|425362996|ref|ZP_18748627.1| DNA polymerase I [Escherichia coli EC1856]
gi|425395181|ref|ZP_18778270.1| DNA polymerase I [Escherichia coli EC1868]
gi|425401236|ref|ZP_18783925.1| DNA polymerase I [Escherichia coli EC1869]
gi|425413689|ref|ZP_18795434.1| DNA polymerase I [Escherichia coli NE098]
gi|425420087|ref|ZP_18801336.1| DNA polymerase I [Escherichia coli FRIK523]
gi|425431301|ref|ZP_18811893.1| DNA polymerase I [Escherichia coli 0.1304]
gi|428949708|ref|ZP_19021963.1| DNA polymerase I [Escherichia coli 88.1467]
gi|428955781|ref|ZP_19027554.1| DNA polymerase I [Escherichia coli 88.1042]
gi|428961911|ref|ZP_19033167.1| DNA polymerase I [Escherichia coli 89.0511]
gi|428968402|ref|ZP_19039089.1| DNA polymerase I [Escherichia coli 90.0091]
gi|428974153|ref|ZP_19044447.1| DNA polymerase I [Escherichia coli 90.0039]
gi|428980634|ref|ZP_19050423.1| DNA polymerase I [Escherichia coli 90.2281]
gi|428986354|ref|ZP_19055726.1| DNA polymerase I [Escherichia coli 93.0055]
gi|428992496|ref|ZP_19061467.1| DNA polymerase I [Escherichia coli 93.0056]
gi|428998393|ref|ZP_19066967.1| DNA polymerase I [Escherichia coli 94.0618]
gi|429010820|ref|ZP_19078199.1| DNA polymerase I [Escherichia coli 95.1288]
gi|429023160|ref|ZP_19089658.1| DNA polymerase I [Escherichia coli 96.0428]
gi|429035348|ref|ZP_19100854.1| DNA polymerase I [Escherichia coli 96.0939]
gi|429047360|ref|ZP_19112055.1| DNA polymerase I [Escherichia coli 96.0107]
gi|429052635|ref|ZP_19117190.1| DNA polymerase I [Escherichia coli 97.0003]
gi|429063710|ref|ZP_19127665.1| DNA polymerase I [Escherichia coli 97.0007]
gi|429075690|ref|ZP_19138931.1| DNA polymerase I [Escherichia coli 99.0678]
gi|429080938|ref|ZP_19144061.1| DNA polymerase I [Escherichia coli 99.0713]
gi|429829119|ref|ZP_19360096.1| DNA polymerase I [Escherichia coli 96.0109]
gi|432419382|ref|ZP_19661970.1| DNA polymerase I [Escherichia coli KTE44]
gi|432578131|ref|ZP_19814575.1| DNA polymerase I [Escherichia coli KTE56]
gi|444927604|ref|ZP_21246856.1| DNA polymerase I [Escherichia coli 09BKT078844]
gi|444933213|ref|ZP_21252208.1| DNA polymerase I [Escherichia coli 99.0814]
gi|444944331|ref|ZP_21262803.1| DNA polymerase I [Escherichia coli 99.0816]
gi|444955420|ref|ZP_21273473.1| DNA polymerase I [Escherichia coli 99.0848]
gi|444960786|ref|ZP_21278596.1| DNA polymerase I [Escherichia coli 99.1753]
gi|444966013|ref|ZP_21283563.1| DNA polymerase I [Escherichia coli 99.1775]
gi|444972048|ref|ZP_21289375.1| DNA polymerase I [Escherichia coli 99.1793]
gi|444977336|ref|ZP_21294400.1| DNA polymerase I [Escherichia coli 99.1805]
gi|444988088|ref|ZP_21304853.1| DNA polymerase I [Escherichia coli PA11]
gi|444993466|ref|ZP_21310095.1| DNA polymerase I [Escherichia coli PA19]
gi|445004189|ref|ZP_21320567.1| DNA polymerase I [Escherichia coli PA2]
gi|445009609|ref|ZP_21325826.1| DNA polymerase I [Escherichia coli PA47]
gi|445014687|ref|ZP_21330780.1| DNA polymerase I [Escherichia coli PA48]
gi|445026018|ref|ZP_21341829.1| DNA polymerase I [Escherichia coli 7.1982]
gi|445031425|ref|ZP_21347079.1| DNA polymerase I [Escherichia coli 99.1781]
gi|445042527|ref|ZP_21357887.1| DNA polymerase I [Escherichia coli PA35]
gi|445056353|ref|ZP_21371253.1| DNA polymerase I [Escherichia coli 99.0670]
gi|452969520|ref|ZP_21967747.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4009]
gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli]
gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli]
gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli]
gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli]
gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli]
gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43]
gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407]
gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520]
gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88]
gi|374361301|gb|AEZ43008.1| DNA polymerase I [Escherichia coli O55:H7 str. RM12579]
gi|377888897|gb|EHU53367.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3A]
gi|377888945|gb|EHU53413.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3B]
gi|377901734|gb|EHU66048.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3C]
gi|377905298|gb|EHU69569.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3D]
gi|377916848|gb|EHU80922.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC3F]
gi|377926429|gb|EHU90363.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4B]
gi|377937173|gb|EHV00960.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4D]
gi|377937552|gb|EHV01328.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4C]
gi|377943526|gb|EHV07236.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4E]
gi|377953582|gb|EHV17151.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC4F]
gi|377956905|gb|EHV20444.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5A]
gi|377961429|gb|EHV24897.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5B]
gi|377969137|gb|EHV32517.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC5C]
gi|377980081|gb|EHV43349.1| DNA polymerase I [Escherichia coli DEC5E]
gi|386798543|gb|AFJ31577.1| DNA polymerase I [Escherichia coli Xuzhou21]
gi|390637395|gb|EIN16944.1| DNA polymerase I [Escherichia coli FDA505]
gi|390638117|gb|EIN17634.1| DNA polymerase I [Escherichia coli FDA517]
gi|390656500|gb|EIN34366.1| DNA polymerase I [Escherichia coli 93-001]
gi|390673839|gb|EIN50054.1| DNA polymerase I [Escherichia coli PA3]
gi|390677169|gb|EIN53232.1| DNA polymerase I [Escherichia coli PA5]
gi|390697244|gb|EIN71668.1| DNA polymerase I [Escherichia coli PA15]
gi|390717323|gb|EIN90110.1| DNA polymerase I [Escherichia coli PA24]
gi|390755585|gb|EIO25121.1| DNA polymerase I [Escherichia coli PA40]
gi|390783322|gb|EIO50929.1| DNA polymerase I [Escherichia coli TW06591]
gi|390786697|gb|EIO54203.1| DNA polymerase I [Escherichia coli TW10246]
gi|390792927|gb|EIO60274.1| DNA polymerase I [Escherichia coli TW11039]
gi|390799843|gb|EIO66966.1| DNA polymerase I [Escherichia coli TW09098]
gi|390804256|gb|EIO71232.1| DNA polymerase I [Escherichia coli TW09109]
gi|390813439|gb|EIO80055.1| DNA polymerase I [Escherichia coli TW10119]
gi|390821898|gb|EIO88059.1| DNA polymerase I [Escherichia coli TW09195]
gi|390827420|gb|EIO93187.1| DNA polymerase I [Escherichia coli EC4196]
gi|390840599|gb|EIP04618.1| DNA polymerase I [Escherichia coli TW14313]
gi|390874701|gb|EIP35793.1| DNA polymerase I [Escherichia coli EC4439]
gi|390880139|gb|EIP40846.1| DNA polymerase I [Escherichia coli EC4436]
gi|390890043|gb|EIP49733.1| DNA polymerase I [Escherichia coli EC4437]
gi|390897733|gb|EIP57040.1| DNA polymerase I [Escherichia coli EC1738]
gi|390905743|gb|EIP64673.1| DNA polymerase I [Escherichia coli EC1734]
gi|390915696|gb|EIP74199.1| DNA polymerase I [Escherichia coli EC1863]
gi|408063511|gb|EKG98002.1| DNA polymerase I [Escherichia coli FRIK920]
gi|408064936|gb|EKG99416.1| DNA polymerase I [Escherichia coli PA34]
gi|408074406|gb|EKH08688.1| DNA polymerase I [Escherichia coli PA7]
gi|408105565|gb|EKH37716.1| DNA polymerase I [Escherichia coli NE1487]
gi|408118639|gb|EKH49763.1| DNA polymerase I [Escherichia coli FRIK2001]
gi|408136746|gb|EKH66481.1| DNA polymerase I [Escherichia coli PA49]
gi|408143598|gb|EKH72877.1| DNA polymerase I [Escherichia coli PA45]
gi|408151979|gb|EKH80433.1| DNA polymerase I [Escherichia coli TT12B]
gi|408157040|gb|EKH85213.1| DNA polymerase I [Escherichia coli MA6]
gi|408161157|gb|EKH89131.1| DNA polymerase I [Escherichia coli 5905]
gi|408170212|gb|EKH97430.1| DNA polymerase I [Escherichia coli CB7326]
gi|408177145|gb|EKI03964.1| DNA polymerase I [Escherichia coli EC96038]
gi|408180093|gb|EKI06724.1| DNA polymerase I [Escherichia coli 5412]
gi|408210477|gb|EKI35040.1| DNA polymerase I [Escherichia coli PA38]
gi|408223409|gb|EKI47182.1| DNA polymerase I [Escherichia coli EC1735]
gi|408234774|gb|EKI57772.1| DNA polymerase I [Escherichia coli EC1736]
gi|408237404|gb|EKI60260.1| DNA polymerase I [Escherichia coli EC1737]
gi|408251695|gb|EKI73415.1| DNA polymerase I [Escherichia coli EC1847]
gi|408255982|gb|EKI77390.1| DNA polymerase I [Escherichia coli EC1848]
gi|408274066|gb|EKI94094.1| DNA polymerase I [Escherichia coli EC1856]
gi|408303028|gb|EKJ20496.1| DNA polymerase I [Escherichia coli EC1868]
gi|408315686|gb|EKJ31990.1| DNA polymerase I [Escherichia coli EC1869]
gi|408322980|gb|EKJ38953.1| DNA polymerase I [Escherichia coli NE098]
gi|408333650|gb|EKJ48596.1| DNA polymerase I [Escherichia coli FRIK523]
gi|408341646|gb|EKJ56089.1| DNA polymerase I [Escherichia coli 0.1304]
gi|408544707|gb|EKK22156.1| DNA polymerase I [Escherichia coli 5.2239]
gi|408545062|gb|EKK22502.1| DNA polymerase I [Escherichia coli 3.4870]
gi|408575538|gb|EKK51196.1| DNA polymerase I [Escherichia coli 10.0833]
gi|408578277|gb|EKK53796.1| DNA polymerase I [Escherichia coli 8.2524]
gi|408593137|gb|EKK67465.1| DNA polymerase I [Escherichia coli 88.0221]
gi|408598787|gb|EKK72728.1| DNA polymerase I [Escherichia coli 8.0416]
gi|408608531|gb|EKK81921.1| DNA polymerase I [Escherichia coli 10.0821]
gi|427200910|gb|EKV71317.1| DNA polymerase I [Escherichia coli 89.0511]
gi|427201162|gb|EKV71558.1| DNA polymerase I [Escherichia coli 88.1042]
gi|427204449|gb|EKV74725.1| DNA polymerase I [Escherichia coli 88.1467]
gi|427217426|gb|EKV86488.1| DNA polymerase I [Escherichia coli 90.0091]
gi|427221188|gb|EKV90056.1| DNA polymerase I [Escherichia coli 90.2281]
gi|427224017|gb|EKV92739.1| DNA polymerase I [Escherichia coli 90.0039]
gi|427237702|gb|EKW05227.1| DNA polymerase I [Escherichia coli 93.0056]
gi|427237781|gb|EKW05304.1| DNA polymerase I [Escherichia coli 93.0055]
gi|427242367|gb|EKW09778.1| DNA polymerase I [Escherichia coli 94.0618]
gi|427257717|gb|EKW23834.1| DNA polymerase I [Escherichia coli 95.1288]
gi|427272955|gb|EKW37661.1| DNA polymerase I [Escherichia coli 96.0428]
gi|427280219|gb|EKW44584.1| DNA polymerase I [Escherichia coli 96.0939]
gi|427295744|gb|EKW58830.1| DNA polymerase I [Escherichia coli 96.0107]
gi|427297467|gb|EKW60501.1| DNA polymerase I [Escherichia coli 97.0003]
gi|427310639|gb|EKW72878.1| DNA polymerase I [Escherichia coli 97.0007]
gi|427324778|gb|EKW86238.1| DNA polymerase I [Escherichia coli 99.0678]
gi|427325913|gb|EKW87340.1| DNA polymerase I [Escherichia coli 99.0713]
gi|429250586|gb|EKY35238.1| DNA polymerase I [Escherichia coli 96.0109]
gi|430935615|gb|ELC55915.1| DNA polymerase I [Escherichia coli KTE44]
gi|431111217|gb|ELE15122.1| DNA polymerase I [Escherichia coli KTE56]
gi|444534786|gb|ELV14970.1| DNA polymerase I [Escherichia coli 99.0814]
gi|444536239|gb|ELV16269.1| DNA polymerase I [Escherichia coli 09BKT078844]
gi|444554136|gb|ELV31716.1| DNA polymerase I [Escherichia coli 99.0816]
gi|444559048|gb|ELV36296.1| DNA polymerase I [Escherichia coli 99.0848]
gi|444568750|gb|ELV45403.1| DNA polymerase I [Escherichia coli 99.1753]
gi|444572207|gb|ELV48652.1| DNA polymerase I [Escherichia coli 99.1775]
gi|444575638|gb|ELV51868.1| DNA polymerase I [Escherichia coli 99.1793]
gi|444587764|gb|ELV63173.1| DNA polymerase I [Escherichia coli 99.1805]
gi|444589141|gb|ELV64484.1| DNA polymerase I [Escherichia coli PA11]
gi|444603034|gb|ELV77750.1| DNA polymerase I [Escherichia coli PA19]
gi|444612198|gb|ELV86498.1| DNA polymerase I [Escherichia coli PA2]
gi|444618731|gb|ELV92802.1| DNA polymerase I [Escherichia coli PA47]
gi|444620084|gb|ELV94100.1| DNA polymerase I [Escherichia coli PA48]
gi|444634956|gb|ELW08398.1| DNA polymerase I [Escherichia coli 7.1982]
gi|444636943|gb|ELW10326.1| DNA polymerase I [Escherichia coli 99.1781]
gi|444651580|gb|ELW24381.1| DNA polymerase I [Escherichia coli PA35]
gi|444671741|gb|ELW43525.1| DNA polymerase I [Escherichia coli 99.0670]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605]
gi|417664507|ref|ZP_12314086.1| DNA polymerase 1 [Escherichia coli AA86]
gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86]
gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|433050332|ref|ZP_20237648.1| DNA polymerase I [Escherichia coli KTE120]
gi|431561430|gb|ELI34800.1| DNA polymerase I [Escherichia coli KTE120]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|432817650|ref|ZP_20051399.1| DNA polymerase I [Escherichia coli KTE115]
gi|431359693|gb|ELG46319.1| DNA polymerase I [Escherichia coli KTE115]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|432487613|ref|ZP_19729519.1| DNA polymerase I [Escherichia coli KTE212]
gi|433175750|ref|ZP_20360251.1| DNA polymerase I [Escherichia coli KTE232]
gi|431013445|gb|ELD27178.1| DNA polymerase I [Escherichia coli KTE212]
gi|431686990|gb|ELJ52543.1| DNA polymerase I [Escherichia coli KTE232]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
gi|384545465|ref|YP_005729529.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
[Shigella flexneri 2002017]
gi|417725276|ref|ZP_12374065.1| DNA polymerase I [Shigella flexneri K-304]
gi|417730558|ref|ZP_12379243.1| DNA polymerase I [Shigella flexneri K-671]
gi|417735536|ref|ZP_12384177.1| DNA polymerase I [Shigella flexneri 2747-71]
gi|420343956|ref|ZP_14845419.1| DNA polymerase I [Shigella flexneri K-404]
gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
[Shigella flexneri 2002017]
gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671]
gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71]
gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304]
gi|391263277|gb|EIQ22287.1| DNA polymerase I [Shigella flexneri K-404]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|419166823|ref|ZP_13711269.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC6E]
gi|378005954|gb|EHV68945.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Escherichia coli DEC6E]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|407466864|ref|YP_006786694.1| DNA polymerase I [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407484410|ref|YP_006781560.1| DNA polymerase I [Escherichia coli O104:H4 str. 2011C-3493]
gi|410484956|ref|YP_006772502.1| DNA polymerase I [Escherichia coli O104:H4 str. 2009EL-2050]
gi|417807549|ref|ZP_12454476.1| DNA polymerase I [Escherichia coli O104:H4 str. LB226692]
gi|417835288|ref|ZP_12481727.1| DNA polymerase I [Escherichia coli O104:H4 str. 01-09591]
gi|417867766|ref|ZP_12512800.1| polA [Escherichia coli O104:H4 str. C227-11]
gi|422990124|ref|ZP_16980896.1| DNA polymerase I [Escherichia coli O104:H4 str. C227-11]
gi|422997021|ref|ZP_16987783.1| DNA polymerase I [Escherichia coli O104:H4 str. C236-11]
gi|423002117|ref|ZP_16992868.1| DNA polymerase I [Escherichia coli O104:H4 str. 09-7901]
gi|423005772|ref|ZP_16996517.1| DNA polymerase I [Escherichia coli O104:H4 str. 04-8351]
gi|423012333|ref|ZP_17003065.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-3677]
gi|423021564|ref|ZP_17012269.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4404]
gi|423026721|ref|ZP_17017415.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4522]
gi|423032549|ref|ZP_17023235.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4623]
gi|423035424|ref|ZP_17026100.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423040545|ref|ZP_17031213.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423047230|ref|ZP_17037888.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423055768|ref|ZP_17044574.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423057772|ref|ZP_17046570.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C5]
gi|429721605|ref|ZP_19256518.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9450]
gi|429773681|ref|ZP_19305693.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02030]
gi|429778865|ref|ZP_19310829.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02033-1]
gi|429782700|ref|ZP_19314623.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02092]
gi|429788093|ref|ZP_19319978.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02093]
gi|429794532|ref|ZP_19326371.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02281]
gi|429800492|ref|ZP_19332279.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02318]
gi|429804104|ref|ZP_19335859.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02913]
gi|429808752|ref|ZP_19340466.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-03439]
gi|429814694|ref|ZP_19346362.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-04080]
gi|429819654|ref|ZP_19351282.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-03943]
gi|429905973|ref|ZP_19371947.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9990]
gi|429910107|ref|ZP_19376067.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9941]
gi|429916006|ref|ZP_19381950.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4984]
gi|429921055|ref|ZP_19386980.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-5604]
gi|429926861|ref|ZP_19392771.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4986]
gi|429930792|ref|ZP_19396691.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4987]
gi|429937334|ref|ZP_19403219.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4988]
gi|429943013|ref|ZP_19408884.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-5603]
gi|429945693|ref|ZP_19411552.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-6006]
gi|429953257|ref|ZP_19419100.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec12-0465]
gi|429956601|ref|ZP_19422431.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec12-0466]
gi|340731868|gb|EGR61007.1| DNA polymerase I [Escherichia coli O104:H4 str. 01-09591]
gi|340737807|gb|EGR72061.1| DNA polymerase I [Escherichia coli O104:H4 str. LB226692]
gi|341921055|gb|EGT70658.1| polA [Escherichia coli O104:H4 str. C227-11]
gi|354856874|gb|EHF17331.1| DNA polymerase I [Escherichia coli O104:H4 str. C236-11]
gi|354861191|gb|EHF21631.1| DNA polymerase I [Escherichia coli O104:H4 str. C227-11]
gi|354861483|gb|EHF21922.1| DNA polymerase I [Escherichia coli O104:H4 str. 04-8351]
gi|354869897|gb|EHF30303.1| DNA polymerase I [Escherichia coli O104:H4 str. 09-7901]
gi|354875826|gb|EHF36189.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-3677]
gi|354885105|gb|EHF45413.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4404]
gi|354888414|gb|EHF48671.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4522]
gi|354891932|gb|EHF52148.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4623]
gi|354903965|gb|EHF64061.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354907492|gb|EHF67552.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354909499|gb|EHF69530.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354911776|gb|EHF71779.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354919965|gb|EHF79902.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-4632 C5]
gi|406780118|gb|AFS59542.1| DNA polymerase I [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407056707|gb|AFS76758.1| DNA polymerase I [Escherichia coli O104:H4 str. 2011C-3493]
gi|407062899|gb|AFS83946.1| DNA polymerase I [Escherichia coli O104:H4 str. 2009EL-2071]
gi|429354859|gb|EKY91554.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02030]
gi|429355601|gb|EKY92288.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02033-1]
gi|429356432|gb|EKY93108.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02092]
gi|429370601|gb|EKZ07165.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02093]
gi|429371061|gb|EKZ07621.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02281]
gi|429375284|gb|EKZ11821.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02318]
gi|429386722|gb|EKZ23168.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-02913]
gi|429389099|gb|EKZ25521.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-03439]
gi|429390208|gb|EKZ26623.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-03943]
gi|429399768|gb|EKZ36087.1| DNA polymerase I [Escherichia coli O104:H4 str. 11-04080]
gi|429401695|gb|EKZ37992.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9990]
gi|429404298|gb|EKZ40575.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9450]
gi|429412555|gb|EKZ48748.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4984]
gi|429415275|gb|EKZ51441.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4986]
gi|429422791|gb|EKZ58902.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4987]
gi|429427372|gb|EKZ63456.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-4988]
gi|429431632|gb|EKZ67678.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-5603]
gi|429437903|gb|EKZ73898.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-5604]
gi|429442252|gb|EKZ78210.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec12-0465]
gi|429447423|gb|EKZ83342.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-6006]
gi|429454111|gb|EKZ89976.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec12-0466]
gi|429458402|gb|EKZ94227.1| DNA polymerase I [Escherichia coli O104:H4 str. Ec11-9941]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|422764510|ref|ZP_16818259.1| DNA polymerase I [Escherichia coli E1167]
gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|422784554|ref|ZP_16837333.1| DNA polymerase I [Escherichia coli TW10509]
gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|416345290|ref|ZP_11678883.1| DNA polymerase I [Escherichia coli EC4100B]
gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143]
gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185]
gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS]
gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|432367332|ref|ZP_19610443.1| DNA polymerase I [Escherichia coli KTE10]
gi|430890567|gb|ELC13196.1| DNA polymerase I [Escherichia coli KTE10]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|417631342|ref|ZP_12281572.1| DNA polymerase I [Escherichia coli STEC_MHI813]
gi|345368991|gb|EGX00980.1| DNA polymerase I [Escherichia coli STEC_MHI813]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|417704317|ref|ZP_12353416.1| DNA polymerase I [Shigella flexneri K-218]
gi|417740406|ref|ZP_12388975.1| DNA polymerase I [Shigella flexneri 4343-70]
gi|420376423|ref|ZP_14876171.1| DNA polymerase I [Shigella flexneri 1235-66]
gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70]
gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218]
gi|391303794|gb|EIQ61624.1| DNA polymerase I [Shigella flexneri 1235-66]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W]
gi|378715226|ref|YP_005280119.1| DNA polymerase I [Escherichia coli KO11FL]
gi|386611232|ref|YP_006126718.1| DNA polymerase I [Escherichia coli W]
gi|386699364|ref|YP_006163201.1| DNA polymerase I [Escherichia coli KO11FL]
gi|386711766|ref|YP_006175487.1| DNA polymerase I [Escherichia coli W]
gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W]
gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W]
gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11FL]
gi|383390891|gb|AFH15849.1| DNA polymerase I [Escherichia coli KO11FL]
gi|383407458|gb|AFH13701.1| DNA polymerase I [Escherichia coli W]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
gi|424839834|ref|ZP_18264471.1| DNA polymerase I [Shigella flexneri 5a str. M90T]
gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
gi|383468886|gb|EID63907.1| DNA polymerase I [Shigella flexneri 5a str. M90T]
Length = 928
Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLARE- 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 125 VEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|421498484|ref|ZP_15945589.1| polA [Aeromonas media WS]
gi|407182528|gb|EKE56480.1| polA [Aeromonas media WS]
Length = 918
Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats.
Identities = 127/291 (43%), Positives = 180/291 (61%), Gaps = 22/291 (7%)
Query: 3 NTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
N L+LVDGSS +YRAF+A D+R P GA+ M+R L K Y ++A +FDA
Sbjct: 5 NPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSLRKQYPDCHVAVVFDA 64
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKATR MP +L Q+ IHQM+KA+G+P L+++GVEADDVIGTLA+Q
Sbjct: 65 KGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADDVIGTLARQ 124
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L V+IST DKDMAQLVS+ + LI+ K DR +I +FGV PE I+DY +L+
Sbjct: 125 A-TEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK--- 235
GD DN+PG+ +G KTA LL S++ I A N+ V R + + K +
Sbjct: 184 GDKVDNIPGMAGVGEKTAQALLQGIGSIDQI---AANLDKVAALGFRGSKTFADKFREQE 240
Query: 236 -------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
++ TIKTD +L +++ + P D++ L+ ++ +Y+L L
Sbjct: 241 DQVRLSYQLATIKTDVELEQSLEELLLG----PIDKESLLAVYREYELRNL 287
>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
gi|451967432|ref|ZP_21920674.1| DNA polymerase I [Edwardsiella tarda NBRC 105688]
gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
gi|451313753|dbj|GAC66036.1| DNA polymerase I [Edwardsiella tarda NBRC 105688]
Length = 930
Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ ++IA +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGAGEPTGAMYGVLNMLRSLIMQYQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMV+A+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVQAMGLPLLVVPGVEADDVIGTLARRA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N + + ++GV PE I+D+ +L+G
Sbjct: 126 -EQAGRHVLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVFDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI-----KGVIGKNLRFALNWLPKL 234
D SDN+PGV +G KTA LL L++I + + + +G + LN K
Sbjct: 185 DASDNIPGVPGVGEKTAQALLQGIGGLQSIYGDIDRVATLSFRGAKTMGAKLLLN---KE 241
Query: 235 KKIL-----TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K L TIKTD DL + + L ++P D L LF +Y+ +
Sbjct: 242 KADLSYLLATIKTDVDLALDC----DDLAIKPLDSATLHTLFQRYEFKR 286
>gi|432452124|ref|ZP_19694378.1| DNA polymerase I [Escherichia coli KTE193]
gi|433035787|ref|ZP_20223472.1| DNA polymerase I [Escherichia coli KTE112]
gi|430977274|gb|ELC94125.1| DNA polymerase I [Escherichia coli KTE193]
gi|431545537|gb|ELI20188.1| DNA polymerase I [Escherichia coli KTE112]
Length = 928
Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|386824733|ref|ZP_10111863.1| DNA polymerase I [Serratia plymuthica PRI-2C]
gi|386378410|gb|EIJ19217.1| DNA polymerase I [Serratia plymuthica PRI-2C]
Length = 933
Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L+ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N +NI + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALYANLDNIATL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + + S + D L QLF +Y+ +
Sbjct: 242 VAYLSYKLATIKTDVELDLSCADLEVSAL----DVDTLQQLFKQYEFKR 286
>gi|424818148|ref|ZP_18243299.1| DNA polymerase I [Escherichia fergusonii ECD227]
gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227]
Length = 928
Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|422807554|ref|ZP_16855984.1| DNA polymerase I [Escherichia fergusonii B253]
gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253]
Length = 928
Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|417116344|ref|ZP_11967205.1| DNA-directed DNA polymerase [Escherichia coli 1.2741]
gi|422803142|ref|ZP_16851632.1| DNA polymerase I [Escherichia coli M863]
gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863]
gi|386138888|gb|EIG80043.1| DNA-directed DNA polymerase [Escherichia coli 1.2741]
Length = 928
Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469]
gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Escherichia fergusonii ATCC 35469]
Length = 928
Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012]
gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012]
Length = 928
Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|419926189|ref|ZP_14443990.1| DNA polymerase I [Escherichia coli 541-15]
gi|388383729|gb|EIL45478.1| DNA polymerase I [Escherichia coli 541-15]
Length = 928
Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELEPTCEQLE---VQQPAAEELL-GLFKKYEFKR 286
>gi|419846091|ref|ZP_14369348.1| DNA-directed DNA polymerase [Haemophilus parainfluenzae HK2019]
gi|386414386|gb|EIJ28942.1| DNA-directed DNA polymerase [Haemophilus parainfluenzae HK2019]
Length = 932
Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats.
Identities = 127/292 (43%), Positives = 179/292 (61%), Gaps = 15/292 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H +++A+G P+L+I+GVEADDVIGTLA A
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLVIEGVEADDVIGTLA-VAA 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K N KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKTNQKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREAVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N + I+G +G L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLDKVAELPIRGAKKLGDKLLAEKEMADL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
++ TIKTD L PE L L + L + F +Y+ + LN +M+
Sbjct: 246 SYRLATIKTDVALDIT----PEQLTLGASNNDQLTEYFGRYEFKRWLNEVMN 293
>gi|345428767|ref|YP_004821883.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Haemophilus parainfluenzae T3T1]
gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Haemophilus parainfluenzae T3T1]
Length = 932
Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats.
Identities = 127/292 (43%), Positives = 179/292 (61%), Gaps = 15/292 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H +++A+G P+L+I+GVEADDVIGTLA A
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLVIEGVEADDVIGTLA-VAA 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K N KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKANQKVLISTGDKDMAQLVDDNIMLINTMNNTLLDRDAVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N + I+G +G L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLDKVAELPIRGAKKLGDKLLAEKEMADL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
++ TIKTD L PE L L + L + F +Y+ + LN +M+
Sbjct: 246 SYRLATIKTDVALDIT----PEQLTLGASNNDQLTEYFGRYEFKRWLNEVMN 293
>gi|195940271|ref|ZP_03085653.1| DNA polymerase I, partial [Escherichia coli O157:H7 str. EC4024]
Length = 881
Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
gi|386266417|ref|YP_005829909.1| DNA polymerase I [Haemophilus influenzae R2846]
gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
Length = 930
Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats.
Identities = 120/288 (41%), Positives = 177/288 (61%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV N I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK 278
K++ DL+ + +I + L+L + L++ F +Y+ +
Sbjct: 239 EKSNADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKR 286
>gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114]
gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Vibrio fischeri ES114]
Length = 932
Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats.
Identities = 123/285 (43%), Positives = 170/285 (59%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N +LVDGSS ++RA++A P+ N D P GA+YG I MLR L K + IA IFDAKG
Sbjct: 7 NPFILVDGSSYLFRAYHAAPNFTNGDGQPTGAVYGVINMLRSLLKQFETDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +YP YKA R MP +L QI +H+++KA+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + V+IST DKDMAQLV + LIN N I D ++ +FG+ PE I+DY +L+GD
Sbjct: 126 SKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMDPEGVVEKFGIGPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL L+ + + ++I + + + L K
Sbjct: 186 KVDNIPGVPGVGDKTAKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNKEGAYL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK D +L K PE + Q + L+Q+F + +
Sbjct: 246 SYELATIKLDVELDKT----PEEFVKQEPNVDELIQMFGQMNFKR 286
>gi|386833763|ref|YP_006239077.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. 3480]
gi|385200463|gb|AFI45318.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. 3480]
Length = 930
Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats.
Identities = 126/294 (42%), Positives = 184/294 (62%), Gaps = 17/294 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N N P GA+YG + ML+ L + ++IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP L QI +H +++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPEELRSQILPLHNIIRALGIPLLVVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ KV+IST DKDMAQLV I LIN NN + DR ++ ++G+ PE I+DY +L+G
Sbjct: 126 -SRAGKKVLISTGDKDMAQLVDENIMLINTMNNTLLDREGVLEKYGLPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ +G KTA+ LL S+ I N + + + +G L A + L
Sbjct: 185 DSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAKLAEAKD-LA 243
Query: 233 KLKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
L +L TIKTD L + PE L ++ L++ F +Y+ + LN +M+
Sbjct: 244 DLSYLLATIKTDVALDVS----PEQLTFGVANKDALIEYFARYEFKRWLNEVMN 293
>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
Length = 930
Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats.
Identities = 120/288 (41%), Positives = 177/288 (61%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV N I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK 278
K++ DL+ + +I + L+L + L++ F +Y+ +
Sbjct: 239 EKSNADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKR 286
>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
gi|422337267|ref|ZP_16418238.1| DNA polymerase I [Aggregatibacter aphrophilus F0387]
gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
gi|353345481|gb|EHB89773.1| DNA polymerase I [Aggregatibacter aphrophilus F0387]
Length = 985
Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats.
Identities = 122/285 (42%), Positives = 176/285 (61%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 60 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 119
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 120 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLACQA- 178
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDM QLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 179 SQSGQKVLISTGDKDMTQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLALMGD 238
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
SDN+PGV +G KTA+ LL S+ I N + I+G +G+ L +
Sbjct: 239 SSDNIPGVSGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGEKLLAEKDMADL 298
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD L + P+ L L + L++ F +Y+ +
Sbjct: 299 SYALATIKTDVALEFS----PQDLPLGDSNNDALIEYFGRYEFKR 339
>gi|419801955|ref|ZP_14327158.1| DNA-directed DNA polymerase [Haemophilus parainfluenzae HK262]
gi|385192322|gb|EIF39728.1| DNA-directed DNA polymerase [Haemophilus parainfluenzae HK262]
Length = 932
Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats.
Identities = 127/292 (43%), Positives = 179/292 (61%), Gaps = 15/292 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGMLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H +++A+G P+L+I+GVEADDVIGTLA A
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLVIEGVEADDVIGTLA-VAA 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K N KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKANQKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREAVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N + I+G +G L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLDKVAELPIRGAKKLGDKLLAEKEMADL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
++ TIKTD L PE L L + L + F +Y+ + LN +M+
Sbjct: 246 SYRLATIKTDVALDIT----PEQLTLGASNNDQLTEYFGRYEFKRWLNEVMN 293
>gi|383309782|ref|YP_005362592.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. HN06]
gi|380871054|gb|AFF23421.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. HN06]
Length = 930
Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats.
Identities = 126/294 (42%), Positives = 184/294 (62%), Gaps = 17/294 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N N P GA+YG + ML+ L + ++IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP L QI +H +++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPEELRSQILPLHNIIRALGIPLLVVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ KV+IST DKDMAQLV I LIN NN + DR ++ ++G+ PE I+DY +L+G
Sbjct: 126 -SRAGKKVLISTGDKDMAQLVDENIMLINTMNNTLLDREGVLEKYGLPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ +G KTA+ LL S+ I N + + + +G L A + L
Sbjct: 185 DSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAKLAEAKD-LA 243
Query: 233 KLKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
L +L TIKTD L + PE L ++ L++ F +Y+ + LN +M+
Sbjct: 244 DLSYLLATIKTDVALDVS----PEQLTFGVANKDALIEYFARYEFKRWLNEVMN 293
>gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1]
gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23]
gi|386084472|ref|YP_006000754.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514]
gi|417558861|ref|ZP_12209820.1| DNA polymerase I [Xylella fastidiosa EB92.1]
gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1]
gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23]
gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514]
gi|338178443|gb|EGO81429.1| DNA polymerase I [Xylella fastidiosa EB92.1]
Length = 923
Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats.
Identities = 125/277 (45%), Positives = 171/277 (61%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAAGEPTGALFGVVNMLRTTLKE-RPDYAAFVIDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L YK R MP +L +Q+ + +V A+G IL I GVEADDVIGTLA AV
Sbjct: 63 FRDALDSEYKMHRPPMPDDLRMQVEPMRGIVHALGIDILCIDGVEADDVIGTLALAAVAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V IST DKD AQLV + L+N +++ +I++FGV+P++I+D+ +L+GD
Sbjct: 123 -GIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLALMGDS 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTA K L +Y SL+ +I NA+ IKG IG NLR L L + ++TIK
Sbjct: 182 VDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIGDNLRVVLPRLLLNRALITIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L K P+ L L+ +D + L + +Y +
Sbjct: 242 TDVVLEKR----PQDLALRERDTEALRDFYQRYGFTQ 274
>gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 929
Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 177/289 (61%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEATGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YKA R MP +L QI +H+MVKA+G P+L + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFENYKAHRPPMPEDLREQIEPLHKMVKAMGLPLLAVSGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGKSVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ N + I G+ + R A PKL+
Sbjct: 185 DASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGL---SFRGAKTMAPKLEQHKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + + L + D L +LF++Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELSC----DQLTVNELDVDELHRLFSRYEFKR 286
>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
Length = 923
Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats.
Identities = 118/286 (41%), Positives = 172/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRA++A P+ N D P GA+YG + MLR + + + +IA IFDAK
Sbjct: 6 ENPLILIDGSSYLYRAYHAAPNFTNSDGEPTGAIYGVVNMLRSMLRQFSTEHIAVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H ++KA+G P++ I GVEADDVIGTL+ QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRSQIEPLHAVIKAMGLPLIAISGVEADDVIGTLSTQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + LIN + + D ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDQNVTLINTMTDVVMDPAGVVDKFGIGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L+ + +N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGEKTAKALLTGIGGLDTLYDNLDDIAALGFRGSKTMAKKLIDNKEAAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIK D +L P+ L D +L +LF K + +
Sbjct: 245 MSYKLATIKLDVELDVT----PDELRKGVPDTDVLTELFGKLQFRR 286
>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
Length = 928
Score = 219 bits (559), Expect = 7e-55, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|425065931|ref|ZP_18469051.1| DNA polymerase I [Pasteurella multocida subsp. gallicida P1059]
gi|404383426|gb|EJZ79880.1| DNA polymerase I [Pasteurella multocida subsp. gallicida P1059]
Length = 930
Score = 219 bits (559), Expect = 7e-55, Method: Composition-based stats.
Identities = 126/294 (42%), Positives = 184/294 (62%), Gaps = 17/294 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N N P GA+YG + ML+ L + ++IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP L QI +H +++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPEELRSQILPLHNIIRALGIPLLVVEGVEADDVIGTLAMQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ KV+IST DKDMAQLV I LIN NN + DR ++ ++G+ PE I+DY +L+G
Sbjct: 126 -SRTGKKVLISTGDKDMAQLVDENIMLINTMNNTLLDREGVLEKYGLPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ +G KTA+ LL S+ I N + + + +G L A + L
Sbjct: 185 DSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAKLAEAKD-LA 243
Query: 233 KLKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
L +L TIKTD L + PE L ++ L++ F +Y+ + LN +M+
Sbjct: 244 DLSYLLATIKTDVALDVS----PEQLTFGVANKDALIEYFARYEFKRWLNEVMN 293
>gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168]
gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168]
Length = 928
Score = 219 bits (559), Expect = 7e-55, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNKEVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVKQPIADELL-DLFRKYEFKR 286
>gi|423684810|ref|ZP_17659618.1| DNA polymerase I [Vibrio fischeri SR5]
gi|371495857|gb|EHN71451.1| DNA polymerase I [Vibrio fischeri SR5]
Length = 932
Score = 219 bits (559), Expect = 7e-55, Method: Composition-based stats.
Identities = 123/285 (43%), Positives = 170/285 (59%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N +LVDGSS ++RA++A P+ N D P GA+YG I MLR L K + IA IFDAKG
Sbjct: 7 NPFILVDGSSYLFRAYHAAPNFTNGDGQPTGAVYGVINMLRSLLKQFETDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +YP YKA R MP +L QI +H+++KA+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + V+IST DKDMAQLV + LIN N I D ++ +FG+ PE I+DY +L+GD
Sbjct: 126 SKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMDPEGVVEKFGIGPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL L+ + + ++I + + + L K
Sbjct: 186 KVDNIPGVPGVGDKTAKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNKEGAYL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK D +L K PE + Q + L+Q+F + +
Sbjct: 246 SYELATIKLDVELDKT----PEEFVKQEPNVDELIQMFGQMNFKR 286
>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
Length = 965
Score = 219 bits (559), Expect = 7e-55, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 178/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+A P + N P GA++G + ML+ L + ++IA +FDAK
Sbjct: 15 QNPLVLVDGSSYLYRAFHAFPPLTNSLGEPTGAMFGVLNMLKSLITQVQPSHIAVVFDAK 74
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H +++A+G P+L I+GVEADDVIGTLA QA
Sbjct: 75 GKTFRDELFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLSIEGVEADDVIGTLALQA 134
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+G
Sbjct: 135 SSAGK-KVLISTGDKDMAQLVDDNIMLINTMNNTLLDREGVIEKYGIPPELIIDYLALMG 193
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ +G KTA+ LL S+ I N + + + +G+ L A
Sbjct: 194 DSSDNIPGISGVGEKTALGLLQGIGSMAEIYANLDKVADLPIRGAKKLGEKLAAAKADAD 253
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD +L N PE LI+ ++ L++ F +Y+ +
Sbjct: 254 LSYVLATIKTDVELDLN----PEQLIIGTANKDELIEYFARYEFKR 295
>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
Length = 930
Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats.
Identities = 123/285 (43%), Positives = 179/285 (62%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV N I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N I+G +G+ L +
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKSNADL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD +L N+ + + L+L + L++ F +Y+ +
Sbjct: 246 SYTLATIKTDVEL--NVTT--DELLLGESQKDQLIEYFARYEFKR 286
>gi|213580148|ref|ZP_03361974.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
Length = 281
Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 122/281 (43%), Positives = 167/281 (59%), Gaps = 14/281 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H +VKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
K+ TIKTD +L E L +Q L+ LF K
Sbjct: 245 LSYKLATIKTDVELELTC----EQLEVQQPIADELLGLFKK 281
>gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
Length = 920
Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats.
Identities = 124/279 (44%), Positives = 172/279 (61%), Gaps = 20/279 (7%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS +YRA++ALP + N GA+ G I M+R+L K++ + IFDAKGK
Sbjct: 9 IVLVDGSSYLYRAYHALPPLTNSKGQATGAVKGVINMIRRLLKDHPGSPSVVIFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +YP YKA R MP +L QI IH ++KA+G P++II GVEADDVIGT A+QA T+
Sbjct: 69 FRDDIYPEYKAHRPPMPDDLREQIEPIHNIIKAMGLPLIIIDGVEADDVIGTYARQA-TE 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
L VI+ST DKDMAQLV+ I L+N N+ + D ++ +FG+ P I+DY +LIGD
Sbjct: 128 QGLDVIVSTGDKDMAQLVNKHITLVNTMNDTVMDEEGVLVKFGIPPSLIIDYLALIGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK------ 236
DN+PGV +G KTA+ LL S++ I N + + + +R A KL+K
Sbjct: 188 DNIPGVAGVGEKTALGLLQGIGSIDEIFANLDKVPEL---PIRGAKTLSAKLEKEKEVAY 244
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
+ TIK D DL +I ESL + D +LL+ F
Sbjct: 245 LSYELATIKLDVDLPDSI----ESLAMVEPDSELLLTYF 279
>gi|417087882|ref|ZP_11954701.1| DNA polymerase I [Escherichia coli cloneA_i1]
gi|355349370|gb|EHF98576.1| DNA polymerase I [Escherichia coli cloneA_i1]
Length = 928
Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats.
Identities = 126/289 (43%), Positives = 172/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G+ FR+ L+ YK+ R MP +L QI +H MVKA G P+L + GVEADDVIGTLA++A
Sbjct: 66 GETFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKARGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|378697057|ref|YP_005179015.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Haemophilus influenzae 10810]
gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
exonuclease [Haemophilus influenzae 10810]
Length = 935
Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats.
Identities = 125/292 (42%), Positives = 184/292 (63%), Gaps = 15/292 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEHYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV N I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N I+G +G+ L +
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKSNAAL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L N+ + + L+L + L++ F +Y+ + LN +M+
Sbjct: 246 SYTLATIKTDVEL--NVTT--DELLLGESQKDQLIEYFARYEFKRWLNEVMN 293
>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
gi|340783454|ref|YP_004750061.1| DNA polymerase I [Acidithiobacillus caldus SM-1]
gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
gi|340557605|gb|AEK59359.1| DNA polymerase I [Acidithiobacillus caldus SM-1]
Length = 894
Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats.
Identities = 113/266 (42%), Positives = 160/266 (60%), Gaps = 4/266 (1%)
Query: 6 LLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNF 65
+LVD SS +YRAF+ALPD+R D P GA+ G MLR+L + Y + I +FDA GK F
Sbjct: 7 ILVDASSFLYRAFHALPDLRAPDGLPTGAILGVANMLRRLQREYPQSEIIVVFDAPGKTF 66
Query: 66 RNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKH 125
R+ L+ YKA R MP + Q+ L+HQ V+A+G +L++ GVEADDVIGTLA+ T
Sbjct: 67 RDALFDQYKAQRPPMPEEMRAQVELLHQWVRAMGLRLLVVPGVEADDVIGTLAR--ATPV 124
Query: 126 NLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLIGDMSD 183
VII+T DKD+ QLV L++ K D + +RFGV P +I DY +L+GD D
Sbjct: 125 QTPVIIATGDKDLTQLVDEHTTLMDTMKGTRTDLAEVRARFGVEPTQIADYLALVGDKVD 184
Query: 184 NLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTD 243
N+PGV GPKT K L QY L+ I+ + I G +G++LR LP+ +++ I+ D
Sbjct: 185 NIPGVPGAGPKTVAKWLQQYGDLDGILAHGQEIPGKVGESLRAVAEILPRSRELARIRCD 244
Query: 244 CDLTKNIVSIPESLILQPKDEKLLMQ 269
++ + P+ L+ E+L Q
Sbjct: 245 VEIPPAEATPPDPATLRRLAERLGFQ 270
>gi|422757343|ref|ZP_16811163.1| DNA polymerase I [Escherichia coli H263]
gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263]
Length = 928
Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats.
Identities = 126/289 (43%), Positives = 172/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP + L+ LF K + +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKXEFKR 286
>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
Length = 935
Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats.
Identities = 125/292 (42%), Positives = 184/292 (63%), Gaps = 15/292 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEHYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV N I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N I+G +G+ L +
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKSNAAL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L N+ + + L+L + L++ F +Y+ + LN +M+
Sbjct: 246 SYTLATIKTDVEL--NVTT--DELLLGESQKDQLIEYFARYEFKRWLNEVMN 293
>gi|417853762|ref|ZP_12499110.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|338219066|gb|EGP04780.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
Anand1_goat]
Length = 930
Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats.
Identities = 126/294 (42%), Positives = 184/294 (62%), Gaps = 17/294 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N N P GA+YG + ML+ L + ++IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP L QI +H +++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPEELRSQILPLHNIIRALGIPLLVVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ KV+IST DKDMAQLV I LIN NN + DR ++ ++G+ PE I+DY +L+G
Sbjct: 126 -SRAGKKVLISTGDKDMAQLVDENIMLINTMNNTLLDREGVLEKYGLPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ +G KTA+ LL S+ I N + + + +G L A + L
Sbjct: 185 DSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAKLAEAKD-LA 243
Query: 233 KLKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
L +L TIKTD L + PE L ++ L++ F +Y+ + LN +M+
Sbjct: 244 DLSYLLATIKTDVALDVS----PEQLTFGVANKDALIEYFARYEFKRWLNEVMN 293
>gi|421263814|ref|ZP_15714835.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
P52VAC]
gi|401689101|gb|EJS84601.1| DNA polymerase I [Pasteurella multocida subsp. multocida str.
P52VAC]
Length = 930
Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats.
Identities = 126/294 (42%), Positives = 184/294 (62%), Gaps = 17/294 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N N P GA+YG + ML+ L + ++IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP L QI +H +++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPEELRSQILPLHNIIRALGIPLLVVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ KV+IST DKDMAQLV I LIN NN + DR ++ ++G+ PE I+DY +L+G
Sbjct: 126 -SRTGKKVLISTGDKDMAQLVDENIMLINTMNNTLLDREGVLEKYGLPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ +G KTA+ LL S+ I N + + + +G L A + L
Sbjct: 185 DSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAKLAEAKD-LA 243
Query: 233 KLKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
L +L TIKTD L + PE L ++ L++ F +Y+ + LN +M+
Sbjct: 244 DLSYLLATIKTDVALDVS----PEQLTFGVANKDALIEYFARYEFKRWLNEVMN 293
>gi|410446910|ref|ZP_11301012.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86E]
gi|409979897|gb|EKO36649.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86E]
Length = 899
Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 113/270 (41%), Positives = 179/270 (66%), Gaps = 8/270 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+ L+DGSS +YRAF+A+P + P GA+ G MLR L K ++ +FDAKGKN
Sbjct: 8 IFLIDGSSYLYRAFHAMPPLTTSKGIPTGAVKGVTNMLRNLRKENPDSHYLSVFDAKGKN 67
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP +L Q++ + ++ A+G P++ I VEADDVI TLA +K
Sbjct: 68 FRHDIYKEYKANRPPMPEDLREQLSPLKEICNAMGMPVIEIPNVEADDVIATLAAIG-SK 126
Query: 125 HNLKVIISTNDKDMAQLVSNK-IALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ +IIS+ DKD+ QLV + + ++N NNKI+D + +FGV P +I+DY +++GD
Sbjct: 127 QGMPMIISSLDKDLMQLVEDPLVKMMNTMNNKIYDVAGVEEKFGVHPNQIIDYLAIVGDT 186
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
SDN+PGV K+GPKTAVK L+++ +L+ II+NA+++ GV+G+N R ++ L + +++T+K
Sbjct: 187 SDNIPGVPKVGPKTAVKWLSEFKTLQGIIDNADSLTGVVGQNFRDSIPDLDRNIELVTLK 246
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
D DL ++ E L++ + ++ L +LF
Sbjct: 247 KDVDLRVSL----EDLLMAEESQEELNKLF 272
>gi|378773780|ref|YP_005176023.1| DNA polymerase I [Pasteurella multocida 36950]
gi|356596328|gb|AET15054.1| DNA polymerase I [Pasteurella multocida 36950]
Length = 930
Score = 219 bits (558), Expect = 9e-55, Method: Composition-based stats.
Identities = 126/294 (42%), Positives = 184/294 (62%), Gaps = 17/294 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N N P GA+YG + ML+ L + ++IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP L QI +H +++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPEELRSQILPLHNIIRALGIPLLVVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ KV+IST DKDMAQLV I LIN NN + DR ++ ++G+ PE I+DY +L+G
Sbjct: 126 -SRTGKKVLISTGDKDMAQLVDENIMLINTMNNTLLDREGVLEKYGLPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ +G KTA+ LL S+ I N + + + +G L A + L
Sbjct: 185 DSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAKLAEAKD-LA 243
Query: 233 KLKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
L +L TIKTD L + PE L ++ L++ F +Y+ + LN +M+
Sbjct: 244 DLSYLLATIKTDVALDVS----PEQLTFGVANKDALIEYFARYEFKRWLNEVMN 293
>gi|417851053|ref|ZP_12496845.1| DNA polymerase I [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338220123|gb|EGP05692.1| DNA polymerase I [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 930
Score = 219 bits (558), Expect = 9e-55, Method: Composition-based stats.
Identities = 126/294 (42%), Positives = 184/294 (62%), Gaps = 17/294 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N N P GA+YG + ML+ L + ++IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP L QI +H +++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPEELRSQILPLHNIIRALGIPLLVVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ KV+IST DKDMAQLV I LIN NN + DR ++ ++G+ PE I+DY +L+G
Sbjct: 126 -SRAGKKVLISTGDKDMAQLVDENIMLINTMNNTLLDREGVLEKYGLPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ +G KTA+ LL S+ I N + + + +G L A + L
Sbjct: 185 DSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAKLAEAKD-LA 243
Query: 233 KLKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
L +L TIKTD L + PE L ++ L++ F +Y+ + LN +M+
Sbjct: 244 DLSYLLATIKTDVALDVS----PEQLTFGVANKDALIEYFARYEFKRWLNEVMN 293
>gi|425063764|ref|ZP_18466889.1| DNA polymerase I [Pasteurella multocida subsp. gallicida X73]
gi|404382318|gb|EJZ78779.1| DNA polymerase I [Pasteurella multocida subsp. gallicida X73]
Length = 930
Score = 219 bits (558), Expect = 9e-55, Method: Composition-based stats.
Identities = 126/294 (42%), Positives = 184/294 (62%), Gaps = 17/294 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N N P GA+YG + ML+ L + ++IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP L QI +H +++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPEELRSQILPLHNIIRALGIPLLVVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ KV+IST DKDMAQLV I LIN NN + DR ++ ++G+ PE I+DY +L+G
Sbjct: 126 -SRAGKKVLISTGDKDMAQLVDENIMLINTMNNTLLDREGVLEKYGLPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ +G KTA+ LL S+ I N + + + +G L A + L
Sbjct: 185 DSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAKLAEAKD-LA 243
Query: 233 KLKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
L +L TIKTD L + PE L ++ L++ F +Y+ + LN +M+
Sbjct: 244 DLSYLLATIKTDVALDVS----PEQLTFGVANKDALIEYFARYEFKRWLNEVMN 293
>gi|385874224|gb|AFI92744.1| DNA polymerase I [Pectobacterium sp. SCC3193]
Length = 929
Score = 219 bits (558), Expect = 9e-55, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 176/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N GA+YG + MLR L + Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEATGAMYGVLNMLRSLLQQYSPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YKA R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGKSVLISTGDKDMAQLVTPSVTLINTMNNTILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ N + I G+ + R A PKL+
Sbjct: 185 DASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGL---SFRGAKTMAPKLEQHKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + + L + D L +LF++Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELSC----DQLTVNELDVDELHRLFSRYEFKR 286
>gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
Length = 929
Score = 219 bits (558), Expect = 9e-55, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 176/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N GA+YG + MLR L + Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEATGAMYGVLNMLRSLLQQYSPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YKA R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGKSVLISTGDKDMAQLVTPSVTLINTMNNTILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ N + I G+ + R A PKL+
Sbjct: 185 DASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGL---SFRGAKTMAPKLEQHKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + + L + D L +LF++Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELSC----DQLTVNELDVDELHRLFSRYEFKR 286
>gi|417228878|ref|ZP_12030636.1| DNA-directed DNA polymerase [Escherichia coli 5.0959]
gi|386208213|gb|EII12718.1| DNA-directed DNA polymerase [Escherichia coli 5.0959]
Length = 928
Score = 219 bits (558), Expect = 9e-55, Method: Composition-based stats.
Identities = 126/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EQAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|411011289|ref|ZP_11387618.1| DNA polymerase I [Aeromonas aquariorum AAK1]
Length = 916
Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats.
Identities = 126/291 (43%), Positives = 180/291 (61%), Gaps = 22/291 (7%)
Query: 3 NTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
N L+LVDGSS +YRAF+A D+R P GA+ M+R L K Y ++A +FDA
Sbjct: 5 NPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSLRKQYPDCHVAVVFDA 64
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKA R MP +L Q+ IHQM+KA+G+P L+++GVEADDVIGTLA+Q
Sbjct: 65 KGKTFRDDIYPEYKANRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADDVIGTLARQ 124
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L V+IST DKDMAQLVS+ + LI+ K DR +I +FGV PE I+DY +L+
Sbjct: 125 A-TEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK-- 236
GD DN+PG+ +G KTA+ LL S++ I A N+ V R + + K ++
Sbjct: 184 GDKVDNIPGMTGVGEKTALALLQGIGSIDEI---AANLDKVAALGFRGSKAFADKFREQE 240
Query: 237 --------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ TIKTD +L +++ + P D++ L+ ++ +Y+L L
Sbjct: 241 EQVRLSYVLATIKTDVELEQSLEELELG----PIDKEALLAVYREYELRNL 287
>gi|423199084|ref|ZP_17185667.1| DNA polymerase I [Aeromonas hydrophila SSU]
gi|404629621|gb|EKB26366.1| DNA polymerase I [Aeromonas hydrophila SSU]
Length = 918
Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats.
Identities = 126/291 (43%), Positives = 180/291 (61%), Gaps = 22/291 (7%)
Query: 3 NTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
N L+LVDGSS +YRAF+A D+R P GA+ M+R L K Y ++A +FDA
Sbjct: 5 NPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSLRKQYPDCHVAVVFDA 64
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +YP YKA R MP +L Q+ IHQM+KA+G+P L+++GVEADDVIGTLA+Q
Sbjct: 65 KGKTFRDDIYPEYKANRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADDVIGTLARQ 124
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ L V+IST DKDMAQLVS+ + LI+ K DR +I +FGV PE I+DY +L+
Sbjct: 125 A-TEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK-- 236
GD DN+PG+ +G KTA+ LL S++ I A N+ V R + + K ++
Sbjct: 184 GDKVDNIPGMTGVGEKTALALLQGIGSIDEI---AANLDKVAALGFRGSKAFADKFREQE 240
Query: 237 --------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ TIKTD +L +++ + P D++ L+ ++ +Y+L L
Sbjct: 241 EQVRLSYVLATIKTDVELEQSLEELELG----PIDKEALLAVYREYELRNL 287
>gi|145629928|ref|ZP_01785710.1| DNA polymerase I [Haemophilus influenzae R3021]
gi|144984209|gb|EDJ91632.1| DNA polymerase I [Haemophilus influenzae R3021]
Length = 255
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 162/253 (64%), Gaps = 11/253 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVS 252
K + DL+ + +
Sbjct: 239 EKPNADLSYTLAT 251
>gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
Length = 930
Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats.
Identities = 127/293 (43%), Positives = 179/293 (61%), Gaps = 15/293 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N N P GA+YG + ML+ L + ++IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP L QI +H +++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEMFEQYKSHRPPMPDELRSQILPLHNIIRALGIPLLVVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+G
Sbjct: 126 -SKAGKKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREGVIEKYGLPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLP 232
D SDN+PGV +G KTA+ LL ++ +I N I+G +G L A
Sbjct: 185 DSSDNIPGVPGVGEKTALSLLQGIGNMTDIYANLEKVAELPIRGAKKLGDKLLEAKEMAD 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD L PE L + L++ F +Y+ + L +MH
Sbjct: 245 LSYALATIKTDVKLEIT----PEQLTFGSANNDKLVEYFGRYEFKRWLTEIMH 293
>gi|453065753|gb|EMF06713.1| DNA polymerase I [Serratia marcescens VGH107]
Length = 932
Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 170/289 (58%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L+ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDDLFAEYKSHRPPMPDDLRAQIEPLHSMVKAMGLPLLVTPGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N NI + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGIGGLDALYGNLENIATL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L L + D L QLF +Y+ +
Sbjct: 242 VAYLSYKLATIKTDVELDLTCA----DLTVSEPDVDTLQQLFKQYEFKR 286
>gi|448244558|ref|YP_007408611.1| DNA polymerase I [Serratia marcescens WW4]
gi|445214922|gb|AGE20592.1| DNA polymerase I [Serratia marcescens WW4]
Length = 932
Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 170/289 (58%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L+ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDDLFAEYKSHRPPMPDDLRAQIEPLHSMVKAMGLPLLVTPGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N NI + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGIGGLDALYGNLENIATL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L L + D L QLF +Y+ +
Sbjct: 242 VAYLSYKLATIKTDVELDLTCA----DLTVSEPDVDTLQQLFKQYEFKR 286
>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
Length = 931
Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats.
Identities = 125/290 (43%), Positives = 179/290 (61%), Gaps = 18/290 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA +FDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR ++ +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL ++ + N ++I G+ + + L K
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGGIDKLYENLDDIAGLGFRGSKTMAKKLVDNKENAEL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + P+SL+ +P KDE KL QL K LN+L
Sbjct: 246 SYQLATIKLDVELDET----PDSLVKAEPNKDELVKLYGQLVFKSWLNEL 291
>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
Length = 956
Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats.
Identities = 122/289 (42%), Positives = 180/289 (62%), Gaps = 22/289 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA++G + ML+ L R ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSQGEPTGAMFGVLNMLKSLISQVRPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YK+ R MP +L QI +H +++++G P+L ++GVEADDVIGTLA QA
Sbjct: 67 KTFRDKLFEQYKSHRPPMPDDLRRQIQPLHDIIRSLGIPLLSVEGVEADDVIGTLAVQAS 126
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV I LIN +N + DR +I ++G+ PE I+DY +L+GD
Sbjct: 127 SQGK-KVLISTGDKDMAQLVDENIMLINTMSNTLLDRQGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
SDN+PGV +G KTA+ LL S+ + N + + + + + KL +K+L
Sbjct: 186 SSDNIPGVAGVGEKTALGLLQGIGSMSEVYANLDKVADLPIRGAK-------KLGEKLLA 238
Query: 240 IKTDCDLTKNIVS---------IPESLIL-QPKDEKLLMQLFNKYKLNK 278
K D DL+ + + IPE LI+ P +++L Q F +Y+ +
Sbjct: 239 AKADADLSYVLATIKTDVKLDVIPEKLIIGTPNNDELAAQ-FGRYEFKR 286
>gi|354599764|ref|ZP_09017781.1| DNA polymerase I [Brenneria sp. EniD312]
gi|353677699|gb|EHD23732.1| DNA polymerase I [Brenneria sp. EniD312]
Length = 930
Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLVQYHPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YK+ R MP +L QI +H+MVKA+G P+L + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFENYKSHRPPMPDDLREQIEPLHRMVKAMGLPLLAVSGVEADDVIGTLALQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGIPVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N + I G+ + R A PKL+
Sbjct: 185 DASDNIPGVPGVGEKTAQALLQGLGGLDVLYANLDKIAGL---SFRGAKTMAPKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L + + L LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELDLTC----EQLTVNEPEVDELHGLFTRYEFKR 286
>gi|340001439|ref|YP_004732323.1| DNA polymerase I [Salmonella bongori NCTC 12419]
gi|339514801|emb|CCC32571.1| DNA polymerase I [Salmonella bongori NCTC 12419]
Length = 928
Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 171/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDRLYAEPEKIAGLTFRGAKTMAGKLAQHKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L E L +Q +L+ LF KY+ +
Sbjct: 245 LSYQLATIKTDVELELTC----EQLEVQQPVADVLLDLFKKYEFKR 286
>gi|401677321|ref|ZP_10809298.1| PolA Protein [Enterobacter sp. SST3]
gi|400215512|gb|EJO46421.1| PolA Protein [Enterobacter sp. SST3]
Length = 930
Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 172/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVAKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLSFRGAKTMAGKLEENKEVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 245 LSYKLATIKTDVELELGC----EQLEVQQPSADELLSLFKKYEFKR 286
>gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11]
gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11]
Length = 932
Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats.
Identities = 123/285 (43%), Positives = 170/285 (59%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N +LVDGSS ++RA++A P+ N D P GA+YG I MLR L K + IA IFDAKG
Sbjct: 7 NPFILVDGSSYLFRAYHAAPNFTNGDGQPTGAVYGVINMLRSLLKQFGTDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +YP YKA R MP +L QI +H+++KA+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + V+IST DKDMAQLV + LIN N I D ++ +FG+ PE I+DY +L+GD
Sbjct: 126 SKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMDPEGVVEKFGIGPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL L+ + + ++I + + + L K
Sbjct: 186 KVDNIPGVPGVGDKTAKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNKEGAYL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK D +L K PE + Q + L+Q+F + +
Sbjct: 246 SYELATIKLDVELDKT----PEEFVKQEPNVDELIQMFGQMNFKR 286
>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [gamma proteobacterium HTCC2207]
gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
Length = 926
Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats.
Identities = 129/279 (46%), Positives = 177/279 (63%), Gaps = 20/279 (7%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRA++ALP + N P GA+ G I M+R+L K+Y + +FDAKGK
Sbjct: 7 LILVDGSSYLYRAYHALPPLTNSKGKPTGAVKGVINMMRRLQKDYPDSTHVVVFDAKGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP +L QI IHQ+++A+G P+LII GVEADDVIGTLA QA T
Sbjct: 67 FRDEIYTEYKANRPPMPDDLREQIAPIHQIIEAMGMPMLIIDGVEADDVIGTLAVQA-TA 125
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
V+IST DKD+AQLV+ I LIN NN DR +I +FG+ PE I+DY +L+GD S
Sbjct: 126 AKQPVVISTGDKDIAQLVNEHITLINTMNNSTMDRAGVIEKFGIPPELIIDYLALLGDKS 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-------- 234
DN+PGV +G KTA+ LL SL++I N +++ G+ R A LPKL
Sbjct: 186 DNIPGVPGVGEKTALGLLQGLGSLDDIYANLDDVAGLA---FRGAKTMLPKLLDNKELAY 242
Query: 235 --KKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
++ TIKTD ++ ++ + + +P D+ L+ LF
Sbjct: 243 LSYQLATIKTDVEMPVHLSELKNA---EP-DKAALLSLF 277
>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
Length = 931
Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats.
Identities = 122/290 (42%), Positives = 179/290 (61%), Gaps = 18/290 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA +FDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASERIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ + GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL SLE + +N ++I + + + L K
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGSLEKLYDNLDDIASLGFRGSKTMAKKLVDNKEEAFL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + P+SL+ +P ++L+ QL K LN+L
Sbjct: 246 SYELATIKLDVELEET----PDSLLKAEPNTDELIKLYGQLVFKSWLNEL 291
>gi|440289773|ref|YP_007342538.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Enterobacteriaceae bacterium strain
FGI 57]
gi|440049295|gb|AGB80353.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Enterobacteriaceae bacterium strain
FGI 57]
Length = 930
Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGAGEPTGAMYGVLNMLRSLLLQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEDYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 EAAGR-PVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +QP + L+ LF KY+ +
Sbjct: 242 VAYLSYKLATIKTDVELELTC----EQLEVQPPAAEELLGLFKKYEFKR 286
>gi|420368052|ref|ZP_14868826.1| DNA polymerase I [Shigella flexneri 1235-66]
gi|391322733|gb|EIQ79407.1| DNA polymerase I [Shigella flexneri 1235-66]
Length = 928
Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNKEVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP E+LL LF +Y+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVRQPAAEELL-GLFKQYEFKR 286
>gi|401765845|ref|YP_006580852.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|400177379|gb|AFP72228.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 930
Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 172/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLSFRGAKTMAGKLEENKEVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 245 LSYKLATIKTDVELELGC----EQLEVQQPSADELLNLFKKYEFKR 286
>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Xenorhabdus bovienii SS-2004]
Length = 932
Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats.
Identities = 122/285 (42%), Positives = 174/285 (61%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIIQYKPSHVAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YK+ R MP +L QI +H+MV+A+G PIL++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDELFAEYKSHRPPMPDDLREQIEPLHKMVEAMGLPILVVPGVEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
K V+IST DKDMAQLV+ I LIN N I + ++GV PE I+D+ +L+GD
Sbjct: 126 EKEGRSVLISTGDKDMAQLVTPYITLINTMTNTILGPEGVSEKYGVPPELIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI--- 237
SDN+PGV +G KTA+ LL SL++I + I + + + + + K++
Sbjct: 186 SSDNIPGVPGVGEKTALGLLQGIGSLDDIYARLDEIATLSFRGAKTLSGKMAQHKEVAYL 245
Query: 238 ----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L K + L + D L+ LF++Y+ +
Sbjct: 246 SYQLATIKTDVELDKTCL----ELAVTAPDSDELLALFSRYEFKR 286
>gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon]
gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12]
gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon]
gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
Length = 923
Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats.
Identities = 125/277 (45%), Positives = 171/277 (61%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAAGEPTGALFGVVNMLRTTLKE-RPDYAAFVIDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L YK R MP +L +Q+ + +V A+G IL I GVEADDVIGTLA AV
Sbjct: 63 FRDALDSEYKMHRPPMPDDLRMQVEPMCGIVHALGIDILCIHGVEADDVIGTLALAAVAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V IST DKD AQLV + L+N +++ +I++FGV+P++I+D+ +L+GD
Sbjct: 123 -GIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLALMGDS 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTA K L +Y SL+ +I NA+ IKG IG NLR L L + ++TIK
Sbjct: 182 VDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIGDNLRVVLPRLLLNRALITIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L K P+ L L+ +D + L + +Y +
Sbjct: 242 TDVVLEKR----PQDLALRERDTEALRDFYQRYGFTQ 274
>gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 930
Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 172/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVAKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLSFRGAKTMAGKLEENKEVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 245 LSYKLATIKTDVELELGC----EQLEVQQPSADDLLSLFKKYEFKR 286
>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Bermanella marisrubri]
gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
Length = 916
Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats.
Identities = 125/275 (45%), Positives = 174/275 (63%), Gaps = 19/275 (6%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RAF+ALP + N P GA+ G I M+R L K Y + I +FDAKGK
Sbjct: 16 VILVDGSSYLFRAFHALPPLTNSKGNPTGAVKGVINMIRSLKKGYPDSKIIVVFDAKGKT 75
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN +YP YKA R MP +L +QI IH ++KA+G P+L+I VEADDVIGTLA +A T
Sbjct: 76 FRNDIYPEYKAHRPPMPDDLRVQIQPIHDIIKAMGLPLLVIDNVEADDVIGTLAHEA-TD 134
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
++ ++ST DKDMAQLVS + LIN NN+ D + ++FGV PE IVDY +L+GD
Sbjct: 135 QGIETLVSTGDKDMAQLVSEHVQLINTMNNEQLDVDGVQAKFGVPPEHIVDYLALMGDKV 194
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-------- 234
DN+PGV K+G KTA L+ SLE++ + +++ + + R A + KL
Sbjct: 195 DNIPGVPKVGEKTAKALIAGLGSLEDVYSRLDDVATL---DFRGAKSMKAKLEEHKEQAF 251
Query: 235 --KKILTIKTDCDLTKNIVSIPESLILQPKDEKLL 267
K++ TIKTD +L + I I +P ++KLL
Sbjct: 252 LSKELATIKTDVELEWGLGDIK---IDEPDNKKLL 283
>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Photobacterium angustum S14]
gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
Length = 923
Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats.
Identities = 118/286 (41%), Positives = 171/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRA++A P+ N D P GA+YG + MLR + + + +IA IFDAK
Sbjct: 6 ENPLILIDGSSYLYRAYHAAPNFTNSDGEPTGAIYGVVNMLRSMLRQFSTEHIAVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H ++KA+G P++ I GVEADDVIGTL+ QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRSQIEPLHAVIKAMGLPLIAISGVEADDVIGTLSTQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + LIN + + D ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDQNVTLINTMTDVVMDPAGVVDKFGIGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L+ + +N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGEKTAKALLTGIGGLDALYDNLDDIAALGFRGSKTMAKKLIDNKEAAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIK D +L P+ L D L +LF K + +
Sbjct: 245 MSYKLATIKLDVELDVT----PDELRKGVPDTDALTELFGKLQFRR 286
>gi|343517783|ref|ZP_08754779.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
[Haemophilus pittmaniae HK 85]
gi|343394634|gb|EGV07181.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
[Haemophilus pittmaniae HK 85]
Length = 231
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 149/216 (68%), Gaps = 3/216 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSAGEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H +++A+G P+L+I+GVEADDVIGTLA A
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLVIEGVEADDVIGTLAV-AA 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K N KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SKANQKVLISTGDKDMAQLVDDNIMLINTMNNTLLDRDAVIEKYGIPPEIIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
+DN+PGV +G KTA+ LL S+ I N + +
Sbjct: 186 TADNIPGVAGVGEKTALGLLQGIGSMAEIYANLDKV 221
>gi|354725732|ref|ZP_09039947.1| DNA polymerase I [Enterobacter mori LMG 25706]
Length = 930
Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats.
Identities = 126/289 (43%), Positives = 172/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHTMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ I G+ R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGL---TFRGAKTMAAKLEDNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 242 VAYLSYKLATIKTDVELELGC----EQLEVQQPSADDLLSLFKKYEFKR 286
>gi|416801966|ref|ZP_11885918.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
Length = 928
Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats.
Identities = 126/289 (43%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK D +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKIDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c]
gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c]
Length = 923
Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats.
Identities = 125/277 (45%), Positives = 172/277 (62%), Gaps = 9/277 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS +YRAF+ALP + N P GAL+G + MLR K R Y A + DA GK
Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAAGEPTGALFGVVNMLRTTLKE-RPDYAAFVIDAPGKT 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L YK R MP +L +Q+ + +V+A+G IL I GVEADDVIGTLA AV
Sbjct: 63 FRDALDSEYKMHRPPMPDDLRVQVEPMCGIVQALGIDILCIDGVEADDVIGTLALAAVAD 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN---NKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
+ V IST DKD AQLV + L+N +++ +I++FGV+P++I+D+ +L+GD
Sbjct: 123 -GIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLALMGDA 181
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIK 241
DN+PGV K GPKTA K L +Y SL+ +I NA+ IKG IG NLR L L + ++TIK
Sbjct: 182 VDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIGDNLRVVLPRLLLNRALITIK 241
Query: 242 TDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TD L K P+ L L+ +D + L + +Y +
Sbjct: 242 TDVVLEK----CPQDLALRERDTEALRGFYQRYGFTQ 274
>gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886]
gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886]
Length = 931
Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats.
Identities = 120/285 (42%), Positives = 173/285 (60%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA++A P++ N P GA+YG + MLR L K Y +++A IFDAKG
Sbjct: 7 NPLILVDGSSYLYRAYHASPNLTNAKGEPTGAVYGVVNMLRSLVKQYPQSHVAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP +L QI +H++++A+G+P+L+I+GVEADDVIGTLA Q
Sbjct: 67 KTFRDDMYAEYKAHRPPMPDDLRSQIAPLHEIIEAMGFPMLVIEGVEADDVIGTLAVQG- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + ++IST DKDMAQLV + I LIN N I + ++G PE I+DY +L+GD
Sbjct: 126 SKAGMPILISTGDKDMAQLVDDNITLINTMTNVIMTPQGVHDKYGFGPEHIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA L+ L++I N + I + + + L + K
Sbjct: 186 KVDNIPGVPGVGEKTATALIAGIGGLDDIYANLDKIADLGFRGSKTMAKKLEENKENAYL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK DC+L PE L + D + L+ LF + +
Sbjct: 246 SYQLATIKLDCELPFK----PEELTNREPDNEKLVALFTELNFKR 286
>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
Length = 936
Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ ++IA +FDAK
Sbjct: 12 ENPFILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPSHIAVVFDAK 71
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MV A+G P+L++ GVEADDVIGTLA QA
Sbjct: 72 GKTFRDELFEQYKSQRPPMPDDLREQIAPLHEMVAAMGLPLLVVAGVEADDVIGTLALQA 131
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K L V+IST DKDMAQLV+ I LIN N + + ++GV PE +VD+ +L+G
Sbjct: 132 -SKKGLPVLISTGDKDMAQLVTADITLINTMTNTLLGPAEVADKYGVPPELMVDFLALMG 190
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA+ LL L I + + I + + + + + K
Sbjct: 191 DSSDNIPGVPGVGEKTALALLQGIGDLATIYQDLSAIAPLGFRGSKTLAEKMAQHKDIAF 250
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKT+ DLT + + L++Q D + L LF++Y+ +
Sbjct: 251 LSYKLATIKTNVDLTTDY----DGLVMQAPDIEKLHALFSRYEFKR 292
>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
Length = 930
Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats.
Identities = 120/288 (41%), Positives = 176/288 (61%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPSLTNAAGEPTGAMYGVLNMLKNLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK 278
K++ DL+ + +I + L+L + L++ F +Y+ +
Sbjct: 239 EKSNADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKR 286
>gi|392981360|ref|YP_006479948.1| DNA polymerase I [Enterobacter cloacae subsp. dissolvens SDM]
gi|392327293|gb|AFM62246.1| DNA polymerase I [Enterobacter cloacae subsp. dissolvens SDM]
Length = 930
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 172/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVAKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLSFRGAKTMAGKLEENKEVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 245 LSYKLATIKTDVELELGC----EQLEVQQPSADDLLGLFKKYEFKR 286
>gi|383816825|ref|ZP_09972215.1| DNA polymerase I [Serratia sp. M24T3]
gi|383294354|gb|EIC82698.1| DNA polymerase I [Serratia sp. M24T3]
Length = 932
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 122/288 (42%), Positives = 178/288 (61%), Gaps = 18/288 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNAAGEPTGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVK++G P+L++ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFTEYKSHRPPMPDDLRAQIEPLHQMVKSMGLPLLVVPGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHSVLISTGDKDMAQLVTPGVTLINTMNNSILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI-----KGVIGKNLRFALN----W 230
D SDN+PGV +G KTA LL L+ + + + I +G ++ A N +
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGIGGLDALYGDLDKIATLSFRGAKTMGVKLAENKEVAY 244
Query: 231 LPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L K+ TIKTD +L ++ E + +P D L +F +Y+ +
Sbjct: 245 LS--YKLATIKTDVELD---ITCAELTVSEPDDSD-LKTMFERYEFKR 286
>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
Length = 937
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 123/290 (42%), Positives = 175/290 (60%), Gaps = 24/290 (8%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVD SS +YRA++ALP + N P GA+YG + MLR L Y ++IA +FDAKG
Sbjct: 7 NPLILVDASSYLYRAYHALPPLTNSHKEPTGAMYGVLNMLRSLLSQYHPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ LY YK+ R MP +L QI +++MV+A+G P+L++ G EADDVIGTLA+QA
Sbjct: 67 KTFRDELYVQYKSHRPPMPDDLASQIEPLYRMVRAMGLPLLVVAGFEADDVIGTLAQQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
K V+IST DKDMAQLV+ I LIN NN + + ++GV PE ++D+ +L+GD
Sbjct: 126 EKAGRSVVISTGDKDMAQLVTTNITLINTMNNTVLGSQEVRDKYGVPPELMIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
SDN+PGV +G KTA L+ L+ + +N I + R A + KL+
Sbjct: 186 SSDNIPGVPGVGEKTAQALIQGLGGLDCLFSNLEKIATL---TFRGAKTFAAKLQQHKEL 242
Query: 236 -----KILTIKTDC--DLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD D+ + ++IP P D L QLF++Y+ +
Sbjct: 243 AYLSYQLATIKTDVKLDIAHDKLNIP------PPDIDQLHQLFSRYEFKR 286
>gi|417843781|ref|ZP_12489847.1| DNA polymerase I [Haemophilus haemolyticus M21127]
gi|341948529|gb|EGT75155.1| DNA polymerase I [Haemophilus haemolyticus M21127]
Length = 935
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 123/295 (41%), Positives = 181/295 (61%), Gaps = 21/295 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ P+ I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPKLIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
KT+ DL+ + +I + L+L L++ F +Y+ + LN +M+
Sbjct: 239 EKTNADLSYTLATIKTDVELNVTTDELLLGESQNDQLIEYFARYEFKRWLNEVMN 293
>gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC
35316]
gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316]
Length = 930
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 175/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHTMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVAKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMATKLQDNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L ++ + + +P E+LL LF KY+ +
Sbjct: 245 LSYQLATIKTDVELE---LTCEQLHVQEPAAEELL-GLFKKYEFKR 286
>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
Length = 930
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 122/295 (41%), Positives = 181/295 (61%), Gaps = 21/295 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
K++ DL+ + +I + L+L + L++ F +Y+ + LN +M+
Sbjct: 239 EKSNADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMN 293
>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
Length = 930
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 122/295 (41%), Positives = 181/295 (61%), Gaps = 21/295 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P GA+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTGAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
K + DL+ + +I + L+L + L++ F +Y+ + LN +M+
Sbjct: 239 EKPNADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMN 293
>gi|425307668|ref|ZP_18697330.1| DNA polymerase I [Escherichia coli N1]
gi|408224835|gb|EKI48537.1| DNA polymerase I [Escherichia coli N1]
Length = 928
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 126/289 (43%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + VEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSSVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGHPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>gi|238921711|ref|YP_002935226.1| DNA polymerase I, putative [Edwardsiella ictaluri 93-146]
gi|238871280|gb|ACR70991.1| DNA polymerase I, putative [Edwardsiella ictaluri 93-146]
Length = 930
Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats.
Identities = 124/291 (42%), Positives = 178/291 (61%), Gaps = 24/291 (8%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIIQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMV+A+G P+L++ GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVEAMGLPLLVVPGVEADDVIGTLARRA 125
Query: 122 --VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
+H V+IST DKDMAQLV+ I LIN N + + ++GV P I+D+ +L
Sbjct: 126 ELAGRH---VLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVCDKYGVPPSLIIDFLAL 182
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI-----KGVIGKNLRFALNWLP 232
+GD SDN+PGV +G KTA LL SL+ I ++ + + +G + LN
Sbjct: 183 MGDASDNIPGVPGVGEKTAQALLQGIGSLKTIYDDLDRVATLSFRGAKTMGAKLLLN--- 239
Query: 233 KLKKIL-----TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K K L TIKTD DL + + L ++ D + L QLF++Y+ +
Sbjct: 240 KEKADLSYLLATIKTDVDLAQG----GDDLAIKVLDSETLHQLFSRYEFKR 286
>gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2]
gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2]
Length = 928
Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKIGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L ++ + + QP E+LL LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELE---LTCEQLEVRQPAAEELL-GLFKQYEFKR 286
>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
gi|1169402|sp|P43741.1|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
Length = 930
Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats.
Identities = 125/292 (42%), Positives = 182/292 (62%), Gaps = 15/292 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P A+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPSLTNAAGEPTSAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRKGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N I+G +G+ L N
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKNNADL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L N+ + + L+L + L++ F +Y+ + LN +M+
Sbjct: 246 SYTLATIKTDVEL--NVTT--DQLLLGESQKDQLIEYFARYEFKRWLNEVMN 293
>gi|395230167|ref|ZP_10408473.1| DNA polymerase I [Citrobacter sp. A1]
gi|424730867|ref|ZP_18159459.1| dna polymerase i [Citrobacter sp. L17]
gi|394716097|gb|EJF21866.1| DNA polymerase I [Citrobacter sp. A1]
gi|422894580|gb|EKU34389.1| dna polymerase i [Citrobacter sp. L17]
Length = 928
Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L ++ + + QP E+LL LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELE---LTCEQLEVRQPAAEELL-GLFKQYEFKR 286
>gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 929
Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEATGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YKA R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGKPVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ N + I + + R A PKL+
Sbjct: 185 DASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAEL---SFRGAKTMAPKLEQHKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + E L + D L +LF++Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELDLS----SEQLTVNEPDVDELHRLFSRYEFKR 286
>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
Length = 937
Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats.
Identities = 121/286 (42%), Positives = 169/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRA++A P+ N D P GA+YG + MLR L + + +IA IFDAK
Sbjct: 21 ENPLILIDGSSYLYRAYHAAPNFTNSDGEPTGAVYGVVNMLRSLLRQFSTEHIAVIFDAK 80
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H ++KA+G P++ I GVEADDVIGTLA QA
Sbjct: 81 GKTFRDDIYPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLIAISGVEADDVIGTLATQA 140
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K + V+IST DKDMAQLV + LIN + + ++ +FG+ PE I+DY +L+G
Sbjct: 141 -SKAGMPVLISTGDKDMAQLVDENVTLINTMTDVVMGPAGVVEKFGIGPELIIDYLALMG 199
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L+ I +N + I + + + L K
Sbjct: 200 DKVDNIPGVPGVGEKTAKALLTGVGGLDAIYDNLDAIPALGFRGSKTMPKKLADNKEAAY 259
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK D +L S P L+ D L LF K + +
Sbjct: 260 MSYELATIKLDVELD----SAPHELLKTEPDTDELTSLFGKLQFRR 301
>gi|418514098|ref|ZP_13080312.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|366080171|gb|EHN44145.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
Length = 928
Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 171/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + E L +Q L+ LF KY+ +
Sbjct: 245 LSYKLATIKTDVELEQTC----EQLEVQQPIADELLGLFKKYEFKR 286
>gi|365101197|ref|ZP_09331904.1| DNA polymerase I [Citrobacter freundii 4_7_47CFAA]
gi|363647644|gb|EHL86858.1| DNA polymerase I [Citrobacter freundii 4_7_47CFAA]
Length = 928
Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 175/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I ++ ++GV PE I+D+ +L+G
Sbjct: 126 -EKIGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVDKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L ++ + + QP E+LL LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELE---LTCEQLEVRQPAAEELL-GLFKQYEFKR 286
>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
Length = 929
Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats.
Identities = 126/290 (43%), Positives = 178/290 (61%), Gaps = 18/290 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA +FDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASERIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR ++ +FG+ PE I+DY +L+GD
Sbjct: 126 SQSGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL L+ + N ++I + + + L K
Sbjct: 186 KVDNIPGVPGVGDKTATALLRGIGGLDKLYENLDDIAPLGFRGSKTMAKKLVDNKENAQL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 246 SYELATIKLDVELEET----PESLLKAEPNKDELIKLYGQLVFKSWLNEL 291
>gi|421846757|ref|ZP_16279902.1| DNA polymerase I [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|411771849|gb|EKS55504.1| DNA polymerase I [Citrobacter freundii ATCC 8090 = MTCC 1658]
Length = 928
Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L ++ + + QP E+LL LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELE---LTCEQLEVRQPAAEELL-GLFKQYEFKR 286
>gi|455641165|gb|EMF20362.1| DNA polymerase I [Citrobacter freundii GTC 09479]
Length = 928
Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L ++ + + QP E+LL LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELE---LTCEQLEVRQPAAEELL-GLFKQYEFKR 286
>gi|365972782|ref|YP_004954343.1| DNA polymerase I [Enterobacter cloacae EcWSU1]
gi|365751695|gb|AEW75922.1| DNA polymerase I [Enterobacter cloacae EcWSU1]
Length = 944
Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 20 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 79
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 80 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 139
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 140 -EKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVTKYGVPPELIIDFLALMG 198
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 199 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAGKLEENKEVAY 258
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 259 LSYKLATIKTDVELELGC----EQLEVQQPSADELLSLFKKYEFKR 300
>gi|418845772|ref|ZP_13400552.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|392812385|gb|EJA68375.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
Length = 928
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
Length = 922
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 121/286 (42%), Positives = 169/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P+ N + P GA+YG + MLR L + + +IA IFDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAAPNFTNSEGEPTGAVYGVVNMLRSLLRQFSTEHIAVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H ++KA+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDIYPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLIAISGVEADDVIGTLATQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K + V+IST DKDMAQLV + LIN + + ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SKAGMPVLISTGDKDMAQLVDENVTLINTMTDVVMGPAGVVEKFGIGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L+ I +N + I + + + L K
Sbjct: 185 DKVDNIPGVPGVGEKTAKALLTGVGGLDAIYDNLDAIPALGFRGSKTMPKKLADNKEAAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK D +L S P L+ D L LF K + +
Sbjct: 245 MSYELATIKLDVELD----SAPHELLKTEPDTDELTSLFGKLQFRR 286
>gi|441506550|ref|ZP_20988518.1| DNA polymerase I [Photobacterium sp. AK15]
gi|441425756|gb|ELR63250.1| DNA polymerase I [Photobacterium sp. AK15]
Length = 923
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 118/286 (41%), Positives = 171/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRA++A P+ N D P GA+YG + MLR + + Y ++A IFDAK
Sbjct: 6 ENPLILIDGSSYLYRAYHAAPNFTNSDGEPTGAVYGVVNMLRSMLRQYATEHVAVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H ++KA+G P++ + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIYPEYKAHRPPMPDDLRGQIEPLHAVIKAMGLPLISVSGVEADDVIGTLATQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K + V+IST DKDMAQLV + LIN + + D ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SKAGMPVLISTGDKDMAQLVDPNVTLINTMTDVVMDPAGVVDKFGIGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L+ + N ++I + + + L + K
Sbjct: 185 DKVDNIPGVPGVGEKTAKALLTGIGGLDALYANLDDIPALGFRGSKTMPKKLEEHKEAAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK D +L P+ L D L +LF K + +
Sbjct: 245 LSYELATIKLDVELDVT----PDQLRKGEPDTDELTKLFGKLQFRR 286
>gi|445140764|ref|ZP_21385073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444852043|gb|ELX77126.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
Length = 928
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
Length = 930
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 122/295 (41%), Positives = 180/295 (61%), Gaps = 21/295 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P A+YG + ML++L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPSLTNAAGEPTNAMYGVLNMLKRLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRNEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
K + DL+ + +I + L+L + L++ F +Y+ + LN +M+
Sbjct: 239 EKPNADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMN 293
>gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|374979492|ref|ZP_09720827.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|375116809|ref|ZP_09761979.1| putative acyltransferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|378447337|ref|YP_005234969.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378452903|ref|YP_005240263.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378701859|ref|YP_005183817.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378986684|ref|YP_005249840.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|378991281|ref|YP_005254445.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379703242|ref|YP_005244970.1| putative xanthine/uracil permeases family protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
ST4/74]
gi|383498601|ref|YP_005399290.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|386589358|ref|YP_006085758.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|418807167|ref|ZP_13362731.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418811329|ref|ZP_13366860.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418818564|ref|ZP_13374034.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418821527|ref|ZP_13376951.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418827433|ref|ZP_13382581.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
gi|418831377|ref|ZP_13386331.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418838369|ref|ZP_13393217.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418840885|ref|ZP_13395710.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418849367|ref|ZP_13404099.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418854754|ref|ZP_13409419.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|418861287|ref|ZP_13415851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418865840|ref|ZP_13420310.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|418870447|ref|ZP_13424864.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|419728715|ref|ZP_14255679.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419733490|ref|ZP_14260387.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419743169|ref|ZP_14269835.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419749259|ref|ZP_14275743.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|421569881|ref|ZP_16015579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421575614|ref|ZP_16021226.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421578860|ref|ZP_16024432.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421583567|ref|ZP_16029088.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|422028236|ref|ZP_16374548.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422033287|ref|ZP_16379365.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427556588|ref|ZP_18929871.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427574509|ref|ZP_18934462.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427595813|ref|ZP_18939377.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427620388|ref|ZP_18944258.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427644110|ref|ZP_18949146.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427658256|ref|ZP_18953870.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427663513|ref|ZP_18958772.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427680610|ref|ZP_18963663.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427801576|ref|ZP_18969121.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|20141441|sp|Q9F173.2|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I
gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5'
exonuclease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
ST4/74]
gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|380465422|gb|AFD60825.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|381298836|gb|EIC39911.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381299931|gb|EIC40998.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381311661|gb|EIC52473.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|381312256|gb|EIC53060.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|383796402|gb|AFH43484.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|392779092|gb|EJA35762.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392780155|gb|EJA36811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392784747|gb|EJA41329.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392790103|gb|EJA46604.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392796405|gb|EJA52742.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392799476|gb|EJA55733.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392799730|gb|EJA55983.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
gi|392810025|gb|EJA66052.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392821214|gb|EJA77041.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392823291|gb|EJA79088.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|392824930|gb|EJA80693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392826915|gb|EJA82634.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|392830535|gb|EJA86183.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|402522064|gb|EJW29395.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402523802|gb|EJW31113.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402526161|gb|EJW33439.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402532057|gb|EJW39257.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|414011985|gb|EKS95918.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414013209|gb|EKS97096.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414013456|gb|EKS97341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414027139|gb|EKT10383.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414028032|gb|EKT11233.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414030485|gb|EKT13583.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414041506|gb|EKT24076.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414041873|gb|EKT24425.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414046653|gb|EKT28970.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414055423|gb|EKT37316.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414061619|gb|EKT43007.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
Length = 928
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
Length = 928
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|375125296|ref|ZP_09770460.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|378957261|ref|YP_005214748.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|421359814|ref|ZP_15810102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421362904|ref|ZP_15813155.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421365968|ref|ZP_15816176.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421373797|ref|ZP_15823936.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421376354|ref|ZP_15826462.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421380925|ref|ZP_15830986.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421383954|ref|ZP_15833984.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421389796|ref|ZP_15839778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421395824|ref|ZP_15845757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421400268|ref|ZP_15850155.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421402173|ref|ZP_15852034.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421409346|ref|ZP_15859137.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421410900|ref|ZP_15860671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421417014|ref|ZP_15866732.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421419949|ref|ZP_15869632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421428224|ref|ZP_15877839.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421431900|ref|ZP_15881478.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421436456|ref|ZP_15885985.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421440964|ref|ZP_15890435.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421445546|ref|ZP_15894968.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421448636|ref|ZP_15898028.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|436618498|ref|ZP_20514448.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|436689026|ref|ZP_20518010.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|436796223|ref|ZP_20522785.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436806375|ref|ZP_20526620.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436814324|ref|ZP_20532266.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436830311|ref|ZP_20535209.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436848506|ref|ZP_20540097.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436855092|ref|ZP_20544457.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436862070|ref|ZP_20548923.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436872199|ref|ZP_20555263.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436881571|ref|ZP_20560966.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436885642|ref|ZP_20562590.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436892878|ref|ZP_20566975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436900275|ref|ZP_20571329.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436910838|ref|ZP_20576928.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436920828|ref|ZP_20583315.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436923065|ref|ZP_20584966.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436937431|ref|ZP_20592605.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436939923|ref|ZP_20594083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436950222|ref|ZP_20599752.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436957849|ref|ZP_20602992.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436973170|ref|ZP_20610547.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436980241|ref|ZP_20613333.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436990628|ref|ZP_20617031.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437011330|ref|ZP_20624506.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437023386|ref|ZP_20629063.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437031476|ref|ZP_20631460.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437046186|ref|ZP_20638138.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437047685|ref|ZP_20639048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437055140|ref|ZP_20643374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437063720|ref|ZP_20648085.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437074191|ref|ZP_20653602.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437086340|ref|ZP_20660458.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437090480|ref|ZP_20662858.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437107156|ref|ZP_20667404.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437119613|ref|ZP_20670932.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437128211|ref|ZP_20675051.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437140218|ref|ZP_20682282.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437144996|ref|ZP_20685261.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437152357|ref|ZP_20690008.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437158719|ref|ZP_20693490.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437171864|ref|ZP_20700855.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437176222|ref|ZP_20703365.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437182394|ref|ZP_20707008.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437245577|ref|ZP_20714707.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437263996|ref|ZP_20719637.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437271831|ref|ZP_20724020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437274917|ref|ZP_20725488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437289590|ref|ZP_20731112.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437310646|ref|ZP_20735773.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437330241|ref|ZP_20741528.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437339758|ref|ZP_20744301.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437360265|ref|ZP_20748192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437414849|ref|ZP_20753761.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437436194|ref|ZP_20756719.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437458747|ref|ZP_20760798.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437480480|ref|ZP_20768319.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437487832|ref|ZP_20770073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437502622|ref|ZP_20774614.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437526663|ref|ZP_20779844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437562331|ref|ZP_20786562.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437577525|ref|ZP_20790988.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437587069|ref|ZP_20793480.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437602786|ref|ZP_20798685.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437615031|ref|ZP_20802014.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437634776|ref|ZP_20807024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437656446|ref|ZP_20810767.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437686339|ref|ZP_20819365.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437694031|ref|ZP_20821644.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437702963|ref|ZP_20824378.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437727464|ref|ZP_20830260.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437756169|ref|ZP_20834358.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437809821|ref|ZP_20840814.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|438009352|ref|ZP_20854422.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438083028|ref|ZP_20858100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438098741|ref|ZP_20862963.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438108935|ref|ZP_20867200.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|438141513|ref|ZP_20875061.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|445137669|ref|ZP_21383601.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|445156916|ref|ZP_21392872.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|445169569|ref|ZP_21395295.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445186553|ref|ZP_21399286.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445229099|ref|ZP_21404907.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445244284|ref|ZP_21408045.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445331879|ref|ZP_21414316.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445343976|ref|ZP_21417347.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445366481|ref|ZP_21425325.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|357207872|gb|AET55918.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|395984318|gb|EJH93507.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|395989029|gb|EJH98165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395992501|gb|EJI01618.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395996123|gb|EJI05176.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|396002569|gb|EJI11560.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396002713|gb|EJI11703.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396011747|gb|EJI20654.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396015726|gb|EJI24596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396020941|gb|EJI29779.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396023876|gb|EJI32667.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396025136|gb|EJI33917.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396032841|gb|EJI41558.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396043650|gb|EJI52249.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396047189|gb|EJI55766.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396047309|gb|EJI55883.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396050051|gb|EJI58588.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396051723|gb|EJI60239.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396053046|gb|EJI61547.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396064566|gb|EJI72950.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|396065129|gb|EJI73507.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|396072583|gb|EJI80892.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|434939665|gb|ELL46444.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|434961741|gb|ELL55007.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434965670|gb|ELL58593.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434969682|gb|ELL62373.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434974477|gb|ELL66845.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434983901|gb|ELL75675.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434989340|gb|ELL80892.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434993412|gb|ELL84836.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434999498|gb|ELL90673.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435000622|gb|ELL91766.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435002981|gb|ELL94023.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|435004087|gb|ELL95084.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435012967|gb|ELM03641.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435020083|gb|ELM10503.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435022227|gb|ELM12559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435027335|gb|ELM17458.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435027613|gb|ELM17734.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435036067|gb|ELM25905.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435042569|gb|ELM32288.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435047229|gb|ELM36824.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435052817|gb|ELM42303.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435054760|gb|ELM44188.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435056400|gb|ELM45790.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435065056|gb|ELM54163.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435067757|gb|ELM56796.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435070159|gb|ELM59156.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435075348|gb|ELM64169.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435078942|gb|ELM67661.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435080800|gb|ELM69467.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435099236|gb|ELM87453.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435100312|gb|ELM88495.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435101838|gb|ELM89970.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435103763|gb|ELM91839.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435107135|gb|ELM95131.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435114484|gb|ELN02289.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435120948|gb|ELN08511.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435128913|gb|ELN16238.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435129255|gb|ELN16561.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435130276|gb|ELN17532.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435137854|gb|ELN24888.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435142844|gb|ELN29724.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435145519|gb|ELN32330.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435151011|gb|ELN37673.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435155999|gb|ELN42502.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435160377|gb|ELN46656.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435164443|gb|ELN50525.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435169615|gb|ELN55386.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435174024|gb|ELN59483.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435175509|gb|ELN60926.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435182345|gb|ELN67366.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435184697|gb|ELN69620.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435189975|gb|ELN74588.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435195315|gb|ELN79718.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435202743|gb|ELN86568.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435210788|gb|ELN94023.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435213598|gb|ELN96482.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435218297|gb|ELO00699.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435222718|gb|ELO04810.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435232237|gb|ELO13344.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435237426|gb|ELO18117.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435237591|gb|ELO18258.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435243073|gb|ELO23372.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435247486|gb|ELO27418.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435259127|gb|ELO38359.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435259413|gb|ELO38637.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435263321|gb|ELO42387.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435266467|gb|ELO45224.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435271920|gb|ELO50356.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435278938|gb|ELO56762.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435281276|gb|ELO58952.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435291250|gb|ELO68114.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435294124|gb|ELO70773.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435299156|gb|ELO75327.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435310211|gb|ELO84742.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435320315|gb|ELO92975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435326367|gb|ELO98195.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435333010|gb|ELP03897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|435334974|gb|ELP05352.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|444844171|gb|ELX69415.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|444846976|gb|ELX72128.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|444863186|gb|ELX88014.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444865764|gb|ELX90527.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444869430|gb|ELX94013.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444877338|gb|ELY01489.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444880621|gb|ELY04689.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444882603|gb|ELY06544.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|444890583|gb|ELY13903.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
Length = 928
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
Length = 931
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 125/290 (43%), Positives = 180/290 (62%), Gaps = 18/290 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P+ + + P A+YG + MLR + + + + +A +FDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPETMSNGDIPTNAVYGVVNMLRSMMRQFSSDRMAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ + GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVVEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL SLE + N ++I + + + L K
Sbjct: 186 KVDNIPGVPGVGDKTAKALLQGIGSLEKLYENLDDIAPLGFRGSKTMAKKLVDNKDNAML 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLIL-QP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 246 SYELATIKLDVELEET----PESLLKNEPNKDELIKLYGQLVFKSWLNEL 291
>gi|418787067|ref|ZP_13342872.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|418793575|ref|ZP_13349302.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|418800307|ref|ZP_13355969.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|392761647|gb|EJA18467.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|392764069|gb|EJA20873.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|392767239|gb|EJA24010.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
Length = 928
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
Length = 930
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 121/295 (41%), Positives = 181/295 (61%), Gaps = 21/295 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P A+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTSAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
K++ DL+ + +I + L+L + L++ F +Y+ + LN +M+
Sbjct: 239 EKSNADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMN 293
>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 928
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586]
gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586]
Length = 929
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 120/286 (41%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L + Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGAGEPTGAMYGVLNMLRSLLQQYHPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L + GVEADDVIGTLA+QA
Sbjct: 66 GKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLSVSGVEADDVIGTLAQQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ +I LIN NN I + +++G+ P I+D+ +L+G
Sbjct: 126 -ERAGKPVLISTGDKDMAQLVTPQITLINTMNNTILGPDEVCAKYGIPPSLIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + +N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGVGGLDALYDNLDKIATLTFRGAKTMAAKLEQHKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L + D L +LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELELGC----EQLTVNELDVTELRELFARYEFKR 286
>gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
Length = 928
Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|440763596|ref|ZP_20942634.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
str. SH11G1113]
gi|440766212|ref|ZP_20945209.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
str. SH08SF124]
gi|440771510|ref|ZP_20950425.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
str. SH10GFN094]
gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|436419382|gb|ELP17259.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
str. SH11G1113]
gi|436421085|gb|ELP18935.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
str. SH10GFN094]
gi|436423291|gb|ELP21105.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
str. SH08SF124]
Length = 928
Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|397162768|ref|ZP_10486235.1| DNA polymerase I [Enterobacter radicincitans DSM 16656]
gi|396095533|gb|EJI93076.1| DNA polymerase I [Enterobacter radicincitans DSM 16656]
Length = 928
Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 173/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAAKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L E L +Q + L+ LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELELTC----EQLEVQQPAAQELLGLFKQYEFKR 286
>gi|407790686|ref|ZP_11137778.1| DNA polymerase I [Gallaecimonas xiamenensis 3-C-1]
gi|407203023|gb|EKE73011.1| DNA polymerase I [Gallaecimonas xiamenensis 3-C-1]
Length = 923
Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats.
Identities = 121/290 (41%), Positives = 179/290 (61%), Gaps = 24/290 (8%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N P GA+YG + ML+ L + + + +A +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYYAPPHLTNSQGEPTGAVYGVVNMLKSLLRQFNPSEMAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YKA R MP +L Q+ +H +VKA+G P++II+GVEADDVIGTLAK+A
Sbjct: 67 KTFRDELFEQYKAHRPSMPDDLRSQVAPLHALVKAMGLPLIIIEGVEADDVIGTLAKKA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V+IST DKDMAQLV +K+ LIN N + D ++ +FGV PE I+D+ +L+GD
Sbjct: 126 SAEGRHVLISTGDKDMAQLVDDKVTLINTMTNSVLDPAGVVEKFGVGPELIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQ-------YNSLENIINNANNIKGVIGKNL-----RFAL 228
DN+PGV +G KTA+ LL Y++LE I + +GK L + L
Sbjct: 186 KVDNIPGVPGVGEKTALGLLQGIGGMDALYDNLEKIAELSFRGAKTMGKKLADNEDQARL 245
Query: 229 NWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++L + TIKTD DL++ + + ++ +D L++ + K + +
Sbjct: 246 SYL-----LATIKTDVDLSEEQL----DMRIKAEDRDALVEWYGKLEFRR 286
>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 930
Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats.
Identities = 125/294 (42%), Positives = 183/294 (62%), Gaps = 17/294 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRAF+A P + N N P GA+YG + ML+ L + ++IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNEPTGAMYGVLNMLKSLISQVQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP L QI +H +++A+G P+L+++GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPEELRSQILPLHNIIRALGIPLLVVEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ KV+IST DKDMAQLV I LIN N + DR ++ ++G+ PE I+DY +L+G
Sbjct: 126 -SRAGKKVLISTGDKDMAQLVDENIMLINTMTNTLLDREGVLEKYGLPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ +G KTA+ LL S+ I N + + + +G L A + L
Sbjct: 185 DSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAKLAEAKD-LA 243
Query: 233 KLKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
L +L TIKTD L + PE L ++ L++ F +Y+ + LN +M+
Sbjct: 244 DLSYLLATIKTDVALDVS----PEQLTFGVANKDALIEYFARYEFKRWLNEVMN 293
>gi|419741491|ref|ZP_14268182.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381291376|gb|EIC32621.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
Length = 886
Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|375264129|ref|YP_005021572.1| DNA polymerase I [Vibrio sp. EJY3]
gi|369839453|gb|AEX20597.1| DNA polymerase I [Vibrio sp. EJY3]
Length = 930
Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats.
Identities = 127/291 (43%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H +++A+G P++ + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+G
Sbjct: 126 SQK-GMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAPLGFRGSKTMAKKLVDNKENAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPSKDELIKLYGQLTFKSWLNEL 291
>gi|419959557|ref|ZP_14475609.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae GS1]
gi|388605455|gb|EIM34673.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae GS1]
Length = 930
Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYHPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVAKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLADNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 245 LSYQLATIKTDVELELTC----EQLEVQEPAADELLGLFRKYEFKR 286
>gi|334121891|ref|ZP_08495935.1| DNA-directed DNA polymerase I [Enterobacter hormaechei ATCC 49162]
gi|333392672|gb|EGK63773.1| DNA-directed DNA polymerase I [Enterobacter hormaechei ATCC 49162]
Length = 944
Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y T+ A +FDAK
Sbjct: 20 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYHPTHAAVVFDAK 79
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 80 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 139
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 140 -EKAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVTKYGVPPELIIDFLALMG 198
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L K++
Sbjct: 199 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLADNKEVAY 258
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 259 LSYQLATIKTDVELELTC----EQLEVQEPAADELLGLFRKYEFKR 300
>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
Length = 930
Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats.
Identities = 125/291 (42%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLADNKDNAV 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQPK-DE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P DE KL QL K LN+L
Sbjct: 245 LSYELATIKLDVELKET----PESLLKTEPSIDELIKLYGQLTFKSWLNEL 291
>gi|343506692|ref|ZP_08744163.1| DNA polymerase I [Vibrio ichthyoenteri ATCC 700023]
gi|342801915|gb|EGU37367.1| DNA polymerase I [Vibrio ichthyoenteri ATCC 700023]
Length = 933
Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats.
Identities = 124/293 (42%), Positives = 176/293 (60%), Gaps = 24/293 (8%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISISGVEADDVIGTLAHQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQQGIPVLISTGDKDMAQLVDENVTLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL S+E + N ++I + R + KL+
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGSMETLYQNLDDIAPL---GFRGSKTMAKKLEDNKEN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLIL-QPKDEKLLM---QLFNKYKLNKL 279
++ TIK D ++ PE L+ QP ++L+ QL K LN+L
Sbjct: 243 ALLSYQLATIKLDVEMEFK----PEQLVKEQPNTDELIKLYGQLVFKSWLNEL 291
>gi|343510744|ref|ZP_08747955.1| DNA polymerase I [Vibrio scophthalmi LMG 19158]
gi|343516251|ref|ZP_08753292.1| DNA polymerase I [Vibrio sp. N418]
gi|342796671|gb|EGU32344.1| DNA polymerase I [Vibrio sp. N418]
gi|342800959|gb|EGU36453.1| DNA polymerase I [Vibrio scophthalmi LMG 19158]
Length = 933
Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats.
Identities = 124/293 (42%), Positives = 176/293 (60%), Gaps = 24/293 (8%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISISGVEADDVIGTLAHQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQQGIPVLISTGDKDMAQLVDENVTLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL S+E + N ++I + R + KL+
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGSMEKLYQNLDDIAPL---GFRGSKTMAKKLEDNKEN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLIL-QPKDEKLLM---QLFNKYKLNKL 279
++ TIK D ++ PE L+ QP ++L+ QL K LN+L
Sbjct: 243 ALLSYQLATIKLDVEMEFK----PEQLVKEQPNTDELIKLYGQLVFKSWLNEL 291
>gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
Length = 929
Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N GA+YG + MLR L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEATGAMYGVLNMLRSLLLQYHPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YKA R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFENYKAHRPPMPEDLREQIEPLHSMVKAMGLPLLAVSGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGKSVLISTGDKDMAQLVTPSVTLINTMNNTILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ N + I + + R A PKL+
Sbjct: 185 DASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAEL---SFRGAKTMAPKLEQHKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + E L + D L +LF++Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELSC----EQLTVNELDVDELHRLFSRYEFKR 286
>gi|437821830|ref|ZP_20843409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|435306761|gb|ELO82004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
Length = 928
Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|375003860|ref|ZP_09728197.1| DNA-directed DNA polymerase [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|416427170|ref|ZP_11693393.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416432228|ref|ZP_11696062.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416435816|ref|ZP_11698029.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416448652|ref|ZP_11706479.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416452810|ref|ZP_11709241.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416461629|ref|ZP_11715418.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416464264|ref|ZP_11716284.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416473014|ref|ZP_11719631.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416488266|ref|ZP_11725733.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416502050|ref|ZP_11732537.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416547643|ref|ZP_11754665.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416580266|ref|ZP_11771749.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416587353|ref|ZP_11776007.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416592846|ref|ZP_11779563.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416600755|ref|ZP_11784646.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416605988|ref|ZP_11787390.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416616322|ref|ZP_11794003.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416622870|ref|ZP_11797171.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416633002|ref|ZP_11801698.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416645242|ref|ZP_11807353.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416649419|ref|ZP_11809836.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416659027|ref|ZP_11814622.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|416664925|ref|ZP_11816377.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416679427|ref|ZP_11823090.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416694486|ref|ZP_11827197.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416704799|ref|ZP_11830490.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|416710762|ref|ZP_11834739.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416718012|ref|ZP_11840201.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416723813|ref|ZP_11844438.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416729369|ref|ZP_11847951.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416742240|ref|ZP_11855709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|416743752|ref|ZP_11856326.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416758990|ref|ZP_11863958.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416764151|ref|ZP_11867808.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416770010|ref|ZP_11871413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|418484597|ref|ZP_13053593.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418491978|ref|ZP_13058480.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|418494956|ref|ZP_13061402.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418499559|ref|ZP_13065964.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418505902|ref|ZP_13072244.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418506969|ref|ZP_13073296.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|418526421|ref|ZP_13092398.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|418764086|ref|ZP_13320190.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|418764408|ref|ZP_13320506.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|418768917|ref|ZP_13324955.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|418774545|ref|ZP_13330512.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418779832|ref|ZP_13335729.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|418782628|ref|ZP_13338490.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|418800409|ref|ZP_13356062.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|419786616|ref|ZP_14312340.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|419792983|ref|ZP_14318612.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|353073935|gb|EHB39698.1| DNA-directed DNA polymerase [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|366058624|gb|EHN22911.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366058752|gb|EHN23032.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|366060618|gb|EHN24880.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366066589|gb|EHN30749.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366070674|gb|EHN34780.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366081930|gb|EHN45868.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|366828757|gb|EHN55637.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372205753|gb|EHP19260.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|392618007|gb|EIX00421.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|392621599|gb|EIX03953.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|392730995|gb|EIZ88230.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|392741083|gb|EIZ98193.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|392743045|gb|EJA00122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|392750570|gb|EJA07531.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392751476|gb|EJA08426.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|392759820|gb|EJA16663.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|392783783|gb|EJA40393.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
Length = 928
Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|421885454|ref|ZP_16316650.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|379985061|emb|CCF88923.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
Length = 928
Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|416573300|ref|ZP_11767787.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|363572000|gb|EHL55896.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
Length = 928
Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|409247671|ref|YP_006888366.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 928
Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
Length = 928
Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|416505717|ref|ZP_11734092.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416517832|ref|ZP_11739630.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416529100|ref|ZP_11744127.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416537560|ref|ZP_11749000.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416548395|ref|ZP_11754789.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|416560544|ref|ZP_11761263.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|452122227|ref|YP_007472475.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|363552795|gb|EHL37074.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363555982|gb|EHL40202.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363559635|gb|EHL43792.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363563259|gb|EHL47338.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|363570982|gb|EHL54900.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363574649|gb|EHL58512.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|451911231|gb|AGF83037.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 928
Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|345301541|ref|YP_004830899.1| DNA polymerase I [Enterobacter asburiae LF7a]
gi|345095478|gb|AEN67114.1| DNA polymerase I [Enterobacter asburiae LF7a]
Length = 929
Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 171/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEDYKSHRPPMPDDLRAQIEPLHTMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKLGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYGESDKIASLTFRGAKTIAAKLEQNKDLAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF KY+ +
Sbjct: 245 LSYKLATIKTDVELELGC----EQLEVQQPSADDLLSLFKKYEFKR 286
>gi|153840365|ref|ZP_01993032.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
gi|149745970|gb|EDM57100.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
Length = 323
Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 125/294 (42%), Positives = 176/294 (59%), Gaps = 24/294 (8%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L QI +H +++A+G P++ + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + I LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL----- 234
D DN+PGV +G KTA LL L + N ++I + R + KL
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAAL---GFRGSKTMAKKLVDNKD 241
Query: 235 -----KKILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 242 NAMLSYELATIKLDVELEET----PESLLKAEPNKDELIKLYGQLTFKSWLNEL 291
>gi|421079362|ref|ZP_15540306.1| DNA-directed DNA polymerase [Pectobacterium wasabiae CFBP 3304]
gi|401706068|gb|EJS96247.1| DNA-directed DNA polymerase [Pectobacterium wasabiae CFBP 3304]
Length = 929
Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats.
Identities = 123/289 (42%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N GA+YG + MLR L + Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEATGAMYGVLNMLRSLLQQYSPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YKA R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGKSVLISTGDKDMAQLVTPSVTLINTMNNTILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+++ N + I + + R A PKL+
Sbjct: 185 DASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAEL---SFRGAKTMAPKLEQHKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + + L + D L +LF++Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELSC----DQLTVNELDVDELHRLFSRYEFKR 286
>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417955025|ref|ZP_12598051.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342814073|gb|EGU49025.1| DNA polymerase I [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 931
Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats.
Identities = 127/295 (43%), Positives = 178/295 (60%), Gaps = 28/295 (9%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA +FDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI------------KGVIGKNLRFAL 228
DN+PGV +G KTA LL L+ + N ++I K +I L
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGGLDKLYENLDDIAPLGFRGSKTMAKKLIDNQDNAKL 245
Query: 229 NWLPKLKKILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ ++ TIK D L + PESL+ +P KDE KL QL K LN+L
Sbjct: 246 SY-----ELATIKLDVALEET----PESLLKAEPNKDELIKLYGQLVFKSWLNEL 291
>gi|377578488|ref|ZP_09807465.1| DNA polymerase I [Escherichia hermannii NBRC 105704]
gi|377540074|dbj|GAB52630.1| DNA polymerase I [Escherichia hermannii NBRC 105704]
Length = 928
Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPDITLINTMTNTILGPEEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL+ L+ + I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLHGLGGLDTLFAEPEKIAGLSFRGAKTMAAKLAEHKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L ++ + QP + +L+ LF KY+ +
Sbjct: 245 LSYQLATIKTDVELE---LTCDRLEVKQPVVD-VLVDLFKKYEFKR 286
>gi|385786657|ref|YP_005817766.1| DNA polymerase I [Erwinia sp. Ejp617]
gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
Length = 929
Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats.
Identities = 122/288 (42%), Positives = 177/288 (61%), Gaps = 18/288 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYKPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YK+ R MP +L QI +H+MVKA+G P+L I GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFDAYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAISGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I ++ ++G+ P ++D+ +L+G
Sbjct: 126 -EKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL ++ I +N + + + + + L + K
Sbjct: 185 DSSDNIPGVAGVGEKTAQALLQGLGGVKEIYDNLDKVATLTFRGAKTMAARLEQNKEMAL 244
Query: 236 ---KILTIKTDC--DLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +LT + +++ E P E+LL LF Y+ +
Sbjct: 245 LSYKLATIKTDVELELTSDQLTVEE-----PAVEELL-ALFKHYEFKR 286
>gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220]
gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220]
Length = 928
Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats.
Identities = 125/289 (43%), Positives = 177/289 (61%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGAPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ I G+ R A N KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGL---TFRGAKNMAGKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP ++LL LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVKQPIADELL-GLFKQYEFKR 286
>gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
Length = 927
Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats.
Identities = 124/290 (42%), Positives = 175/290 (60%), Gaps = 22/290 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N ++LVDGSS +YRA++A P + N P GA+YG + ML+ L YR +++A +FDAK
Sbjct: 6 ENPIILVDGSSYLYRAYHAFPPLTNRAGEPTGAMYGVLNMLKSLLVQYRPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRSQIAPLHDMVKAMGLPLLAVSGVEADDVIGTLA-LA 124
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLVS KI LIN +N I + +FGV PE I+DY +L+G
Sbjct: 125 AARGGRDVLISTGDKDMAQLVSPKITLINTMSNTILGPEEVQLKFGVPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL LE++ +++ + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLESLYQQLDSVSSL---SFRGAKTMAAKLEQHRE 241
Query: 236 ------KILTIKTDCDLTKNIVSIP-ESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD L +P + L ++ + + LM LF +Y+ +
Sbjct: 242 VAFLSYQLATIKTDVPL-----DLPYDRLTVEEPEAEALMLLFQRYEFKR 286
>gi|336247956|ref|YP_004591666.1| DNA polymerase I [Enterobacter aerogenes KCTC 2190]
gi|334734012|gb|AEG96387.1| DNA polymerase I [Enterobacter aerogenes KCTC 2190]
Length = 926
Score = 216 bits (551), Expect = 8e-54, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L + E L+ QP ++LL LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELD---LGCEELLVAQPAADELL-ALFKQYEFKR 286
>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-3139]
gi|378961778|ref|YP_005219264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. P-stx-12]
gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|374355650|gb|AEZ47411.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. P-stx-12]
Length = 928
Score = 216 bits (551), Expect = 8e-54, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H +VKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1]
gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1]
Length = 928
Score = 216 bits (550), Expect = 8e-54, Method: Composition-based stats.
Identities = 123/289 (42%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MV+A+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVRAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N + +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPGITLINTMTNTVLGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDVLYAQPEKIAEL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD L ++ E L +QP L++LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVALEQSC----EQLEVQPPAADTLVELFKKYEFKR 286
>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
exonuclease [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 923
Score = 216 bits (550), Expect = 8e-54, Method: Composition-based stats.
Identities = 119/286 (41%), Positives = 171/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRA++A P+ N D P GA+YG + MLR + + + +IA IFDAK
Sbjct: 6 ENPLILIDGSSYLYRAYHAAPNFTNSDGEPTGAVYGVVNMLRSMLRQFSTEHIAVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++P YKA R MP +L QI +H ++KA+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMFPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGTLATQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV I LIN + + D ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDQNITLINTMTDVVMDPAGVVDKFGIGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L+ + +N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGEKTAKALLTGIGGLDALYDNLDDIAPLGFRGSKTMAKKLLDNKEAAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIK D +L P+ L D L +LF K + +
Sbjct: 245 MSYKLATIKLDVELDVK----PDELRKGVPDTDALTELFGKLQFRR 286
>gi|372277221|ref|ZP_09513257.1| DNA polymerase I [Pantoea sp. SL1_M5]
Length = 928
Score = 216 bits (550), Expect = 8e-54, Method: Composition-based stats.
Identities = 121/290 (41%), Positives = 175/290 (60%), Gaps = 22/290 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLAQYNPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP L QI +H+MV+A+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDELRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K L V+IST DKDMAQLV+ I LIN +N I + ++GV P I+D+ +++G
Sbjct: 126 -EKKGLSVLISTGDKDMAQLVTPAITLINTMSNTILGPEEVEQKYGVPPALIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL S++ I +N + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADL---GFRGAKTMATKLEQNRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIP-ESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++P E L + D + L LF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVEL-----ALPCEELTVTEPDTEALQALFSRYEFKR 286
>gi|388602773|ref|ZP_10161169.1| DNA polymerase I [Vibrio campbellii DS40M4]
Length = 930
Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats.
Identities = 121/291 (41%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + PESL+ +P ++L+ QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPSTDELIKLYGQLTFKSWLNEL 291
>gi|390437335|ref|ZP_10225873.1| DNA polymerase I [Pantoea agglomerans IG1]
Length = 928
Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats.
Identities = 121/290 (41%), Positives = 175/290 (60%), Gaps = 22/290 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLAQYNPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP L QI +H+MV+A+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDELRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K L V+IST DKDMAQLV+ I LIN +N I + ++GV P I+D+ +++G
Sbjct: 126 -EKKGLSVLISTGDKDMAQLVTPAITLINTMSNTILGPKEVEQKYGVPPALIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL S++ I +N + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADL---GFRGAKTMATKLEQNRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIP-ESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++P E L + D + L LF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVEL-----ALPCEELTVTEPDTEALQALFSRYEFKR 286
>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
Length = 870
Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H +VKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
Length = 930
Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats.
Identities = 121/291 (41%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + PESL+ +P ++L+ QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPSTDELIKLYGQLTFKSWLNEL 291
>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
Length = 935
Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats.
Identities = 121/295 (41%), Positives = 180/295 (61%), Gaps = 21/295 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P A+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAAGEPTSAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KKILT 239
+DN+PGV +G KTA+ LL S+ I N + + KL +K+L
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA-------ELPIRGAKKLGEKLLA 238
Query: 240 IKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
K++ DL+ + +I + L+L + L++ F +Y+ + LN +M+
Sbjct: 239 EKSNADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMN 293
>gi|444921443|ref|ZP_21241279.1| DNA polymerase I [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507481|gb|ELV07657.1| DNA polymerase I [Wohlfahrtiimonas chitiniclastica SH04]
Length = 914
Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats.
Identities = 116/280 (41%), Positives = 173/280 (61%), Gaps = 7/280 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+ T L++DGS+ ++RA++ALP + P GA+ G I M +KL + Y A FDAK
Sbjct: 3 KQTFLIIDGSNFLFRAYHALPPLTTRAGQPTGAIRGVITMFQKLLDTFNPAYAAVTFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK+FR+ LY YKA R MP +L Q+ + +V +G+P LII G+EADDVI TLA +
Sbjct: 63 GKSFRSDLYADYKAHRPPMPDDLRAQVAPLMDVVDFLGFPRLIIDGIEADDVIATLALEG 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K +V+I+++DKD+AQLV I + + N + DR + +FGV PE I DY +L+G
Sbjct: 123 KAK-GYEVVIASSDKDLAQLVGGPIKMFDGMKNLMLDRDGVYEKFGVYPEAIRDYLTLMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D +DN+PGV+ +GPKTA K L +Y +L+ II NA IKG +G+ LR +L L +++ T
Sbjct: 182 DKADNIPGVEGVGPKTAAKWLAEYETLDGIIENAEKIKGKVGERLRNSLEQLELSRQLTT 241
Query: 240 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ D DL + E L L+ + L +L+ +++ N L
Sbjct: 242 LLMDADLPYRV----EDLALRDPNVDELTKLYTEFEFNSL 277
>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
Length = 930
Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats.
Identities = 121/291 (41%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + PESL+ +P ++L+ QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPSTDELIKLYGQLTFKSWLNEL 291
>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
Length = 930
Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats.
Identities = 121/291 (41%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + PESL+ +P ++L+ QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPSTDELIKLYGQLTFKSWLNEL 291
>gi|424048318|ref|ZP_17785872.1| DNA polymerase I [Vibrio cholerae HENC-03]
gi|408882953|gb|EKM21748.1| DNA polymerase I [Vibrio cholerae HENC-03]
Length = 930
Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats.
Identities = 121/291 (41%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + PESL+ +P ++L+ QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKTEPSTDELIKLYGQLTFKSWLNEL 291
>gi|424035698|ref|ZP_17774881.1| DNA polymerase I [Vibrio cholerae HENC-02]
gi|408897485|gb|EKM33248.1| DNA polymerase I [Vibrio cholerae HENC-02]
Length = 930
Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats.
Identities = 121/291 (41%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + PESL+ +P ++L+ QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPSTDELIKLYGQLTFKSWLNEL 291
>gi|444424781|ref|ZP_21220233.1| DNA polymerase I [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444241904|gb|ELU53422.1| DNA polymerase I [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 930
Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats.
Identities = 121/291 (41%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + PESL+ +P ++L+ QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPSTDELIKLYGQLTFKSWLNEL 291
>gi|350529887|ref|ZP_08908828.1| DNA polymerase I [Vibrio rotiferianus DAT722]
Length = 930
Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats.
Identities = 121/291 (41%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + PESL+ +P ++L+ QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPSTDELIKLYGQLTFKSWLNEL 291
>gi|424865266|ref|ZP_18289135.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86B]
gi|400758872|gb|EJP73072.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86B]
Length = 891
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 166/275 (60%), Gaps = 8/275 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+N + ++DGSS +YRAF+ALP + D P GA+ G ML L K + I +FDA
Sbjct: 1 MKNRIFIIDGSSYLYRAFHALPPLTTSDGRPTGAIKGVTNMLMNLKKESEGSPIIVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FRN +Y YK R MP L Q+ + + AIG+P++ I GVEADDVI TL Q
Sbjct: 61 KGKTFRNDIYKEYKQNRPPMPDELRSQLQPVKDICSAIGFPLIEISGVEADDVIATLV-Q 119
Query: 121 AVTKHNLKVIISTNDKDMAQLVSN-KIALINN--NKIHDRTTIISRFGVSPEKIVDYFSL 177
K K +IS+ DKD+ QLV + I +++ +KI D + +FGV P ++ D +L
Sbjct: 120 IAKKEKYKAVISSLDKDLMQLVEDPHITMMDTMKHKIFDEEKVEEKFGVKPNQVRDLLAL 179
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
GD SDN+PGV K+GPKTA K L Y +ENII N N+IKGV+G NLR L + ++
Sbjct: 180 TGDSSDNIPGVPKVGPKTAAKWLLTYGDIENIIKNQNDIKGVVGDNLREFSGSLARNIEL 239
Query: 238 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFN 272
+++K D DL K+ I ++ DE+ L ++F+
Sbjct: 240 VSLKDDVDLGKSFQEILDA----KGDEEELNRIFS 270
>gi|374334321|ref|YP_005091008.1| DNA polymerase I [Oceanimonas sp. GK1]
gi|372984008|gb|AEY00258.1| DNA polymerase I [Oceanimonas sp. GK1]
Length = 911
Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats.
Identities = 122/289 (42%), Positives = 173/289 (59%), Gaps = 22/289 (7%)
Query: 5 LLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
L+LVDGSS +YRA++A D+R D P GA+ MLR L+K + + +A +FDAKG
Sbjct: 9 LILVDGSSYLYRAYFASQQADLRTSDGRPTGAIRVVTNMLRSLHKQFPESRVAVVFDAKG 68
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI IH +++A+G P+LI +GVEADDVIGTLA+QA
Sbjct: 69 KTFRDDIYPEYKAHRPSMPDDLRSQIQPIHDIIRAMGLPLLIEEGVEADDVIGTLARQA- 127
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
T+ L V+IST DKDMAQLVS+ + L++ N DR ++ +FGV PE I+D +L+GD
Sbjct: 128 TEQRLDVVISTGDKDMAQLVSDHVLLMDTMKNSFLDRDGVVEKFGVPPESIIDLLALVGD 187
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK---- 236
DN+PG+ +G KTA+ LL S+++I N + I + R A ++ PK +
Sbjct: 188 KVDNIPGMPGVGEKTALALLQGLGSIDDIAANTDKIASL---GFRGAKSFAPKFVEHEEM 244
Query: 237 ------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ TIKTD L P L D + L L+ +++ L
Sbjct: 245 VRLSYTLATIKTDVALHVG----PADLQQTAPDTEALRALYQEFEFRNL 289
>gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 928
Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKEVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L E L +Q L+ LF +Y+ +
Sbjct: 245 LSYKLATIKTDVELELTC----EQLEVQQPIAHELLGLFKEYEFKR 286
>gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591]
gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591]
Length = 928
Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats.
Identities = 120/286 (41%), Positives = 173/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L + Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGVGEPTGAMYGVLNMLRSLLQQYHPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L + GVEADDVIGTLA+QA
Sbjct: 66 GKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLSVSGVEADDVIGTLAQQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN NN I + +++G+ P I+D+ +L+G
Sbjct: 126 -ERVGKPVLISTGDKDMAQLVTPHITLINTMNNTILGPDEVCAKYGIPPSLIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV IG KTA LL L+ + N + I + + + L + K
Sbjct: 185 DSSDNIPGVPGIGEKTAQALLQGVGGLDALYGNLDKIATLTFRGAKTMAAKLEQHKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + E L + + L +LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELEQGC----EQLTVNEPNVAELSELFTRYEFKR 286
>gi|424034473|ref|ZP_17773878.1| DNA polymerase I [Vibrio cholerae HENC-01]
gi|408873076|gb|EKM12283.1| DNA polymerase I [Vibrio cholerae HENC-01]
Length = 930
Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats.
Identities = 121/291 (41%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +YP YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLM---QLFNKYKLNKL 279
++ TIK D +L + PESL+ +P ++L+ QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPSTDELIKLYGQLTFKSWLNEL 291
>gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937]
gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937]
Length = 944
Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats.
Identities = 119/286 (41%), Positives = 172/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L + Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGAGEPTGAMYGVLNMLRSLLQQYHPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L + GVEADDVIGTLA+QA
Sbjct: 66 GKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLSVSGVEADDVIGTLAQQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN NN I + +++G+ P I+D+ +L+G
Sbjct: 126 -ERAGKPVLISTGDKDMAQLVTPNITLINTMNNTILGPDEVCAKYGIPPSLIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + + + I + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYADLDKIASLTFRGAKTMAAKLEQNKELAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L + D L +LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELELGC----EQLTVNEPDVAELHELFTRYEFKR 286
>gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638]
gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638]
Length = 930
Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 175/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ ++ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGLPTGAMYGVLNMLRSLILQYQPSHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I + +++GV PE I+D+ +L+G
Sbjct: 126 -EKLGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVATKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + ++ I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTIAAKLEQNKEVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP E+LL LF +Y+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIAEELL-GLFKQYEFKR 286
>gi|336122868|ref|YP_004564916.1| DNA polymerase I [Vibrio anguillarum 775]
gi|335340591|gb|AEH31874.1| DNA polymerase I [Vibrio anguillarum 775]
Length = 971
Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats.
Identities = 105/216 (48%), Positives = 144/216 (66%), Gaps = 3/216 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N +L+DGSS +YRAF+A P + P A+YG + MLR + + + A + IFDAKG
Sbjct: 48 NPFILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFSAERMVVIFDAKG 107
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I+GVEADDVIGTLA QA
Sbjct: 108 KTFRDDMYPQYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIEGVEADDVIGTLASQA- 166
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 167 SQAGMPVLISTGDKDMAQLVDENVTLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 226
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
DN+PGV +G KTA+ LL SLE I +N + I
Sbjct: 227 KVDNIPGVPGVGEKTAIALLQGIGSLEQIYDNLDKI 262
>gi|375129559|ref|YP_004991656.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
Length = 932
Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats.
Identities = 118/283 (41%), Positives = 169/283 (59%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG I M+R + + + + +A +FDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVINMVRAMMRQFASDRMAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ LYP YKA R MP +L QI +H +++A+G P+L I+GVEADDVIGTLA QA
Sbjct: 67 KTFRDELYPEYKAQRPPMPDDLRCQIEPLHNVIRAMGLPLLSIEGVEADDVIGTLAHQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGIPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL L + +N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGGLTALYDNLDKIADL---GFRGSKTMAKKLEDNRAN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D L PE+L+ D L++L+ +
Sbjct: 243 AELSYELATIKLDVALD----CTPETLLKATPDRDALIELYGQ 281
>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
Length = 928
Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats.
Identities = 122/288 (42%), Positives = 177/288 (61%), Gaps = 18/288 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGKPTGAMYGVLNMLRSLLLQYKPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YK+ R MP +L QI +H MV+A+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEAYKSHRPPMPDDLRAQIEPLHNMVRAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I ++ ++G+ PE I+D+ +L+G
Sbjct: 126 -GKKGKPVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL +++I N + + + + + L + K
Sbjct: 185 DASDNIPGVPGVGEKTAQALLQGLGGIKDIYANLDKVADLTFRGAKTMATKLEQNKEMAL 244
Query: 236 ---KILTIKTDC--DLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD DLT +++ E P E+LL LF +Y+ +
Sbjct: 245 LSYQLATIKTDVELDLTSEQLTVNE-----PAVEELL-GLFREYEFKR 286
>gi|437932817|ref|ZP_20851210.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435311173|gb|ELO85443.1| DNA polymerase I, partial [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
Length = 254
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 155/250 (62%), Gaps = 10/250 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKT 242
K+ TIKT
Sbjct: 245 LSYKLATIKT 254
>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
Length = 928
Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats.
Identities = 126/291 (43%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L QI +H +++A+G P++ + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV + I LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 SQK-GMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I G+ + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAGLGFRGSKTMAKKLIDNKENAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPNKDELVKLYGQLTFKSWLNEL 291
>gi|365540266|ref|ZP_09365441.1| DNA polymerase I [Vibrio ordalii ATCC 33509]
Length = 931
Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats.
Identities = 105/216 (48%), Positives = 144/216 (66%), Gaps = 3/216 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N +L+DGSS +YRAF+A P + P A+YG + MLR + + + A + IFDAKG
Sbjct: 7 NPFILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFSAERMVVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ I+GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPQYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIEGVEADDVIGTLASQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDENVTLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
DN+PGV +G KTA+ LL SLE I +N + I
Sbjct: 186 KVDNIPGVPGVGEKTAIALLQGIGSLEQIYDNFDKI 221
>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
Length = 932
Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats.
Identities = 122/290 (42%), Positives = 176/290 (60%), Gaps = 18/290 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P+ + P A+YG + MLR + + + + IA +FDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPETMSNGEIPTNAVYGVVNMLRSMMRQFASERIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H ++KA+G P++ + GVEADDVIGTLA QA
Sbjct: 67 KTFRDNMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLICVPGVEADDVIGTLAHQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL ++++ ++I + + + L + K
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGGIKDLYERLDDIAPLGFRGSKTMAKKLTEHKDNAVL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLILQPK--DE--KLLMQLFNKYKLNKL 279
++ TIK D +L PESL+ Q DE KL QL K LN+L
Sbjct: 246 SYELATIKLDVELD----CTPESLLKQQPNVDELTKLYGQLTFKSWLNEL 291
>gi|375258171|ref|YP_005017341.1| DNA polymerase I [Klebsiella oxytoca KCTC 1686]
gi|365907649|gb|AEX03102.1| DNA polymerase I [Klebsiella oxytoca KCTC 1686]
Length = 929
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 173/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L + + L+ QP ++LL LF KY+ +
Sbjct: 245 LSYQLATIKTDVELE---LGCEDLLVAQPVADELL-TLFKKYEFKR 286
>gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
Length = 952
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 105/241 (43%), Positives = 159/241 (65%), Gaps = 3/241 (1%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
LLL+DGS+ ++RA++ALP + P GA+ G + ML + + +A A IFDA GK
Sbjct: 4 LLLIDGSNYLFRAYHALPPLTTSRGEPSGAIKGFLGMLANVARLSKADRAAVIFDAPGKT 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +YP+YKA R MP L QI + +V+A+GWP+LI+ G+EADDVIG+L+ A +
Sbjct: 64 FRHEMYPAYKANRPPMPEELRTQIEPLQGIVRALGWPLLIVPGIEADDVIGSLSAMA-AR 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ +++T DKDMAQLV + + L+N N+K +DR +I ++GV PE ++ Y +L+GD
Sbjct: 123 AGVDTVVATGDKDMAQLVDDHVVLLNTMNSKFYDREGVIEKYGVPPESMIAYLALMGDKV 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+K GPKTA K +N+ ++ I A +KG IG+NLR L ++ + ++TIK
Sbjct: 183 DNVPGIKSCGPKTAAKWINEIGGIDAIRAAAPTMKGKIGENLRAGLPFIDEAVALVTIKR 242
Query: 243 D 243
D
Sbjct: 243 D 243
>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
Length = 929
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 121/286 (42%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYKPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L I GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAIPGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I ++ ++G+ P ++D+ +L+G
Sbjct: 126 -EKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL +++I N + + + + + L + K
Sbjct: 185 DSSDNIPGVAGVGEKTAQALLQGLGGVKDIYANLDKVATLTFRGAKTMAAKLEQNKEMAL 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L N + + QP E+LL LF Y+ +
Sbjct: 245 LSYQLATIKTDVELELNSDQLT---VEQPAVEELL-ALFKHYEFKR 286
>gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972]
gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972]
Length = 932
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 118/283 (41%), Positives = 169/283 (59%), Gaps = 20/283 (7%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG I M+R + + + + +A +FDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVINMVRAMMRQFASDRMAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ LYP YKA R MP +L QI +H +++A+G P+L I+GVEADDVIGTLA QA
Sbjct: 67 KTFRDELYPEYKAQRPPMPDDLRCQIEPLHNVIRAMGLPLLSIEGVEADDVIGTLAHQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + + LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGIPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G KTA LL L + +N + I + R + KL+
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGGLTALYDNLDKIADL---GFRGSKTMAKKLEDNRAN 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
++ TIK D L PE+L+ D L++L+ +
Sbjct: 243 AELSYELATIKLDVALD----CTPETLLKATPDRDALIELYGQ 281
>gi|423122885|ref|ZP_17110569.1| DNA polymerase I [Klebsiella oxytoca 10-5246]
gi|376391819|gb|EHT04487.1| DNA polymerase I [Klebsiella oxytoca 10-5246]
Length = 928
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 123/286 (43%), Positives = 172/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHTMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L +S E +L P + LL LF KY+ +
Sbjct: 245 LSYQLATIKTDVELD---LSCEELHVLPPAADDLL-ALFKKYEFKR 286
>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
gi|387869406|ref|YP_005800775.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
Length = 929
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 121/288 (42%), Positives = 177/288 (61%), Gaps = 18/288 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYKPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YK+ R MP +L QI +H+MVKA+G P+L I GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFDAYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAISGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I ++ ++G+ P ++D+ +L+G
Sbjct: 126 -EKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL ++ I +N + + + + + L + K
Sbjct: 185 DSSDNIPGVAGVGEKTAQALLQGLGGVKEIYDNLDKVATLTFRGAKTMAARLEQNKEMAL 244
Query: 236 ---KILTIKTDC--DLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +LT + +++ E P E+LL LF Y+ +
Sbjct: 245 LSYQLATIKTDVELELTSDQLTVEE-----PAVEELL-ALFKHYEFKR 286
>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
Length = 934
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L+ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV++ + LIN NN I + ++G+ PE I+D+ +L+G
Sbjct: 126 -EKAGHAVLISTGDKDMAQLVTSNVTLINTMNNTILGPQEVCDKYGIPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N ++I + + R A KL+
Sbjct: 185 DASDNIPGVPGVGEKTAQGLLQGLGGLDMLYANLDSIATL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L L + P D L QLF +Y+ +
Sbjct: 242 MAYLSYKLATIKTDVELDITCA----DLQVSPLDVDTLQQLFKQYEFKR 286
>gi|375109946|ref|ZP_09756184.1| DNA polymerase I [Alishewanella jeotgali KCTC 22429]
gi|374569980|gb|EHR41125.1| DNA polymerase I [Alishewanella jeotgali KCTC 22429]
Length = 926
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 115/283 (40%), Positives = 168/283 (59%), Gaps = 10/283 (3%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS ++RA++A P + N GA+YG + ML+ L K Y+ T +A +FDAKG
Sbjct: 7 NPLILVDGSSYLFRAYHAPPHLTNSRGEATGAIYGVVNMLKSLLKQYQPTQMAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
FRN +Y YKA R MP +L QI +H++++A+G P+L I GVEADDVIGTLA+QA
Sbjct: 67 PTFRNEMYAEYKAHRPPMPDDLRSQIEPLHKIIRAMGLPLLCISGVEADDVIGTLARQAS 126
Query: 123 T--KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
+H L IST DKDMAQLV + LIN N + D ++ +FG+ PE I+DY +L+
Sbjct: 127 AAGRHTL---ISTGDKDMAQLVDEHVTLINTMTNTLLDPPAVLEKFGIGPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PG+ +G KTA LL S+E I + + G+ + + L + + L
Sbjct: 184 GDKVDNIPGLPGVGEKTAAALLQGLGSIEQIYQQLDQVAGLSFRGAKTMAVKLQEFEAQL 243
Query: 239 TIKTDCDLTKNIVSIP---ESLILQPKDEKLLMQLFNKYKLNK 278
+ + K V +P + L +QP D L +L+ + + +
Sbjct: 244 KLSYELATIKCDVELPCTLDELTIQPADRAQLAELYRECEFKR 286
>gi|423105652|ref|ZP_17093354.1| DNA polymerase I [Klebsiella oxytoca 10-5242]
gi|376379896|gb|EHS92645.1| DNA polymerase I [Klebsiella oxytoca 10-5242]
Length = 926
Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 173/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLAFRGAKTMAAKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L + + L+ QP ++LL LF KY+ +
Sbjct: 245 LSYQLATIKTDVELE---LGCEDLLVAQPIADELL-TLFKKYEFKR 286
>gi|440758546|ref|ZP_20937710.1| DNA polymerase I [Pantoea agglomerans 299R]
gi|436427720|gb|ELP25393.1| DNA polymerase I [Pantoea agglomerans 299R]
Length = 928
Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats.
Identities = 121/290 (41%), Positives = 176/290 (60%), Gaps = 22/290 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLAQYNPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MV+A+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K L V+IST DKDMAQLV+ I LIN +N I + ++GV P I+D+ +++G
Sbjct: 126 -EKKGLSVLISTGDKDMAQLVTPAITLINTMSNTILGPEEVEQKYGVPPALIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL S++ I +N + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADL---GFRGAKTMATKLEQNRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIP-ESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++P E L + D + L LF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVEL-----ALPCEELNVTEPDVEALQTLFSRYEFKR 286
>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
Length = 928
Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats.
Identities = 121/290 (41%), Positives = 176/290 (60%), Gaps = 22/290 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLAQYNPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MV+A+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K L V+IST DKDMAQLV+ I LIN +N I + ++GV P I+D+ +++G
Sbjct: 126 -EKKGLSVLISTGDKDMAQLVTPAITLINTMSNTILGPEEVEQKYGVPPALIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL S++ I +N + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADL---GFRGAKTMATKLEQNRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIP-ESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++P E L + D + L LF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVEL-----ALPCEELNVTEPDVEALQTLFSRYEFKR 286
>gi|400405845|ref|YP_006588704.1| DNA polymerase I [secondary endosymbiont of Ctenarytaina eucalypti]
gi|400364208|gb|AFP85276.1| DNA polymerase I [secondary endosymbiont of Ctenarytaina eucalypti]
Length = 928
Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats.
Identities = 125/290 (43%), Positives = 181/290 (62%), Gaps = 22/290 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +++DGSS +YRA++A P + N P+GA+YG I ML+ L Y +++A +FDAK
Sbjct: 6 ENPFIIIDGSSYLYRAYHAFPPLTNCFGEPIGAIYGVINMLKSLLVEYHPSHLAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR++L+ +YK+ R MP NL LQI +H++VKA+G P+L + GVEADDVIGTLA A
Sbjct: 66 GKTFRDVLFENYKSHRPPMPENLRLQIAPLHKIVKAMGLPLLAVNGVEADDVIGTLALAA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V K+ V+IST+DKDMAQLVS KI LIN +N I + +FGV PE IVDY +L+G
Sbjct: 126 V-KNGHYVLISTSDKDMAQLVSPKITLINTMSNTILGPEEVRLKFGVPPELIVDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL----- 234
D +DN+PGV +G KT+ LL L+ + ++I+ + + R A KL
Sbjct: 185 DSADNIPGVPGVGKKTSQALLRGLGGLKTLYQQLDSIRTL---SFRGAKTMAEKLIQHRE 241
Query: 235 -----KKILTIKTDCDLTKNIVSIP-ESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKT+ +L +IP E L ++ + LM LF +Y+ +
Sbjct: 242 VAFLSHQLATIKTNVEL-----NIPYERLAVENPNIASLMLLFQRYEFKR 286
>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
Length = 928
Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats.
Identities = 125/291 (42%), Positives = 175/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L QI +H +++A+G P++ + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAHQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV + I LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 SQK-GMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLIDNKENAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPNKDELVKLYGQLTFKSWLNEL 291
>gi|381403373|ref|ZP_09928057.1| DNA polymerase I [Pantoea sp. Sc1]
gi|380736572|gb|EIB97635.1| DNA polymerase I [Pantoea sp. Sc1]
Length = 928
Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats.
Identities = 120/289 (41%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLAQYNPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MV+A+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLVS I LIN N I + ++GV P I+D+ +++G
Sbjct: 126 -EKKGRSVLISTGDKDMAQLVSPGITLINTMTNTILGPEEVEQKYGVPPALIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL S++ I +N + + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADL---SFRGAKTMATKLEQNRE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + E L + D + L LF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVELAQPC----EELTVTDPDIEALQSLFSRYEFKR 286
>gi|423111124|ref|ZP_17098819.1| DNA polymerase I [Klebsiella oxytoca 10-5243]
gi|376377141|gb|EHS89913.1| DNA polymerase I [Klebsiella oxytoca 10-5243]
Length = 929
Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 173/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L + + L+ QP ++LL LF KY+ +
Sbjct: 245 LSYQLATIKTDVELD---LGCEDLLVEQPVADELL-TLFKKYEFKR 286
>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
Length = 931
Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats.
Identities = 124/291 (42%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L QI +H +++A+G P++ + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + I LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPNKDELIKLYGQLTFKSWLNEL 291
>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
Length = 928
Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats.
Identities = 119/289 (41%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLMQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVKAMGLPLLAVTGVEADDVIGTLAQEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N + + ++GV P I+D+ +++G
Sbjct: 126 -EKQGRPVLISTGDKDMAQLVTPGITLINTMTNTVLGPEEVEQKYGVPPSLIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL +++I +N++ V + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGMQSIY---DNLEKVADLSFRGAKTMAAKLEQNRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L + D +L LF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVELELGC----EQLTVNEPDVAVLQTLFSRYEFKR 286
>gi|423117136|ref|ZP_17104827.1| DNA polymerase I [Klebsiella oxytoca 10-5245]
gi|376376437|gb|EHS89215.1| DNA polymerase I [Klebsiella oxytoca 10-5245]
Length = 929
Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 173/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L + + L+ QP ++LL LF KY+ +
Sbjct: 245 LSYQLATIKTDVELD---LGCEDLLVEQPVADELL-TLFKKYEFKR 286
>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
Length = 931
Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats.
Identities = 124/291 (42%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L QI +H +++A+G P++ + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + I LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPNKDELIKLYGQLTFKSWLNEL 291
>gi|417320976|ref|ZP_12107516.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
Length = 930
Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats.
Identities = 124/291 (42%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L QI +H +++A+G P++ + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + I LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPNKDELIKLYGQLTFKSWLNEL 291
>gi|408375632|ref|ZP_11173293.1| DNA polymerase I [Alcanivorax hongdengensis A-11-3]
gi|407764508|gb|EKF72984.1| DNA polymerase I [Alcanivorax hongdengensis A-11-3]
Length = 920
Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats.
Identities = 116/281 (41%), Positives = 172/281 (61%), Gaps = 14/281 (4%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS +YRAF+ALP + P GA+ G MLRKL K+Y Y+A +FDAKGK
Sbjct: 8 IILVDGSSYLYRAFHALPPLTTSSGQPTGAVRGVAAMLRKLMKDYDPEYMAVVFDAKGKT 67
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L+ YK+ R MP +L Q+ +H +++A+G P++I +GVEADDVIGT A+ +
Sbjct: 68 FRDELFEEYKSNRPPMPDDLRAQVQPLHDLIRAMGLPLIIEEGVEADDVIGTFAR-IFGE 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
V+IST DKDMAQLV++K+ LIN N+ ++D + +FGV PE I+D+ +L+GD
Sbjct: 127 QGKPVLISTGDKDMAQLVTDKVTLINTMNDALYDIEGVKKKFGVGPELIIDFLALMGDKV 186
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLPKLK 235
DN+PGV +G KTA+ L+ SLE I N + + + +GK L
Sbjct: 187 DNIPGVPGVGEKTALGLIQGLGSLETIYQNLDKVAELSFRGAKTLGKKLEAHKEQAFLSY 246
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
K+ TIK DC+L+++ + L LQ D + L + + + +
Sbjct: 247 KLATIKLDCELSED----QDDLKLQTPDAEKLAEYYRQLEF 283
>gi|451972454|ref|ZP_21925662.1| DNA polymerase I [Vibrio alginolyticus E0666]
gi|451931664|gb|EMD79350.1| DNA polymerase I [Vibrio alginolyticus E0666]
Length = 928
Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats.
Identities = 125/291 (42%), Positives = 175/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L QI +H +++A+G P++ + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAHQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV + I LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 SQK-GMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLIDNKENAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPNKDELVKLYGQLTFKSWLNEL 291
>gi|433656420|ref|YP_007273799.1| DNA polymerase I [Vibrio parahaemolyticus BB22OP]
gi|432507108|gb|AGB08625.1| DNA polymerase I [Vibrio parahaemolyticus BB22OP]
Length = 931
Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats.
Identities = 124/291 (42%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRAF+A P + P A+YG + MLR + + + + IA +FDAK
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L QI +H +++A+G P++ + GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTLAYQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV + I LIN N + DR ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA LL L + N ++I + + + L K
Sbjct: 185 DKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNKDNAM 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLI-LQP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 245 LSYELATIKLDVELEET----PESLLKAEPNKDELIKLYGQLTFKSWLNEL 291
>gi|407794112|ref|ZP_11141141.1| DNA polymerase I [Idiomarina xiamenensis 10-D-4]
gi|407213536|gb|EKE83392.1| DNA polymerase I [Idiomarina xiamenensis 10-D-4]
Length = 920
Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats.
Identities = 114/286 (39%), Positives = 177/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +LVDGSS ++RAF+A P + N GA+YG + MLR L K Y+ +++A +FDAK
Sbjct: 7 ENPFILVDGSSYLFRAFHAPPHLTNSKGEATGAIYGVVNMLRSLLKRYQPSHMAVVFDAK 66
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FRN +Y YKA R MP L QI +HQ+V+A+G P+L I+GVEADDVIGTL++QA
Sbjct: 67 GPTFRNDIYSEYKAHRPPMPDELRRQIEPLHQIVEAMGLPLLCIEGVEADDVIGTLSRQA 126
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ +IST DKDMAQLV+ + LIN + + D + +++GV PE+ +DY +L+G
Sbjct: 127 -SEAGRFTLISTGDKDMAQLVNEHVMLINTMTDTLLDGDGVFNKYGVKPEQFIDYLALMG 185
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D SDN+PG+ K+G KTA +L + S+E++ + + + + + + LR L
Sbjct: 186 DSSDNIPGLPKVGEKTAQAMLAGFASVEHLYEDPDAVASLSFRGAKSMPEKLREHREQLL 245
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+++ TIK D + I P+ L +Q D L++L+ + + +
Sbjct: 246 MSRELATIKLDVE----IPLTPDKLTIQTADRDRLVELYGQCEFRR 287
>gi|423126574|ref|ZP_17114253.1| DNA polymerase I [Klebsiella oxytoca 10-5250]
gi|376396830|gb|EHT09467.1| DNA polymerase I [Klebsiella oxytoca 10-5250]
Length = 929
Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats.
Identities = 122/286 (42%), Positives = 173/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI-- 237
D SDN+PGV +G KTA LL L+ + I G+ + + L + K++
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLEQNKEVAY 244
Query: 238 -----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L + + L+ QP ++LL LF KY+ +
Sbjct: 245 LSYQLATIKTDVELD---LGCEDLLVAQPIADELL-TLFKKYEFKR 286
>gi|365847528|ref|ZP_09388015.1| DNA-directed DNA polymerase [Yokenella regensburgei ATCC 43003]
gi|364572307|gb|EHM49862.1| DNA-directed DNA polymerase [Yokenella regensburgei ATCC 43003]
Length = 928
Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats.
Identities = 121/286 (42%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ ++ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGAGEPTGAMYGVLNMLRSLILQYQPSHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEDYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLEQSKDLAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + L +Q L+ LF KY+ +
Sbjct: 245 LSYKLATIKTDVELELTC----DQLEVQAPAADELLGLFRKYEFKR 286
>gi|393763384|ref|ZP_10352005.1| DNA polymerase I [Alishewanella agri BL06]
gi|392605724|gb|EIW88614.1| DNA polymerase I [Alishewanella agri BL06]
Length = 930
Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats.
Identities = 114/284 (40%), Positives = 169/284 (59%), Gaps = 10/284 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA++A P + N GA+YG + ML+ L K Y+ T +A +FDAK
Sbjct: 6 KNPLILVDGSSYLFRAYHAPPHLTNSRGEATGAIYGVVNMLKSLLKQYQPTQMAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FRN +Y YKA R MP +L QI +H +++A+G P+L I GVEADDVIGTLA+QA
Sbjct: 66 GPTFRNEMYAEYKAHRPPMPDDLRSQIEPLHNIIRAMGLPLLCISGVEADDVIGTLARQA 125
Query: 122 VT--KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
+H L IST DKDMAQLV + LIN N + D ++ +FG+ PE I+DY +L
Sbjct: 126 SAAGRHTL---ISTGDKDMAQLVDEHVTLINTMTNTLLDPPAVLEKFGIGPELIIDYLAL 182
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
+GD DN+PG+ +G KTA LL S+E I + + + + + L + +
Sbjct: 183 MGDKVDNIPGLPGVGEKTAAALLQGLGSIEQIYQQLDQVAALSFRGAKTMAAKLQEFEAQ 242
Query: 238 LTIKTDCDLTKNIVSIP---ESLILQPKDEKLLMQLFNKYKLNK 278
L + + K V++P + L +QP D+ L +L+ + + +
Sbjct: 243 LKLSYELATIKCDVALPCTLDELQIQPADQAQLAELYRECEFKR 286
>gi|395234013|ref|ZP_10412244.1| DNA polymerase I [Enterobacter sp. Ag1]
gi|394731379|gb|EJF31160.1| DNA polymerase I [Enterobacter sp. Ag1]
Length = 928
Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats.
Identities = 122/285 (42%), Positives = 171/285 (60%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYHAFPPLTNSRGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA +A
Sbjct: 67 KTFRDELFEDYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLALEA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
K V+IST DKDMAQLV+ + LIN N I +++++GV PE I+D+ +L+GD
Sbjct: 126 EKAGRPVLISTGDKDMAQLVTPGVTLINTMTNTILGPEEVLTKYGVPPELIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
SDN+PGV +G KTA LL L+ + N I + + + L + K
Sbjct: 186 SSDNIPGVPGVGEKTAQALLQGLGGLDTLYANPEKIAELTFRGAKTMAAKLEQSKELAYL 245
Query: 236 --KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L + + + QP ++LL LF +Y+ +
Sbjct: 246 SYKLATIKTDVELE---LGCEQLEVQQPAADELLT-LFKQYEFKR 286
>gi|418020806|ref|ZP_12660008.1| DNA polymerase I [Candidatus Regiella insecticola R5.15]
gi|347603842|gb|EGY28605.1| DNA polymerase I [Candidatus Regiella insecticola R5.15]
Length = 937
Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats.
Identities = 122/288 (42%), Positives = 170/288 (59%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVD SS +YRA++ALP + N P GA+YG + MLR L Y ++IA +FDAKG
Sbjct: 7 NPLILVDASSYLYRAYHALPPLTNSHKEPTGAMYGVLNMLRSLLSQYHPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ LY YK+ R MP +L QI +++MV+A+G P+L++ G EADDVIGTLA+QA
Sbjct: 67 KTFRDELYVQYKSHRPPMPDDLTSQIEPLYRMVRAMGLPLLVVAGFEADDVIGTLAQQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
K V+IST DKDMAQLV+ I LIN NN + + ++GV PE + D+ +L+GD
Sbjct: 126 EKAGRSVVISTGDKDMAQLVTTNITLINTMNNTVLGPQEVRDKYGVPPELMTDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
SDN+PGV +G KTA L+ L+ + +N I + R A + KL+
Sbjct: 186 SSDNIPGVPGVGEKTAQALIQGLGGLDCLFSNLEKIATL---TFRGAKTFAAKLQQHKEL 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD L + L + P D L QLF+ Y+ +
Sbjct: 243 AYLSYQLATIKTDVKLDITY----DKLNITPPDIDQLHQLFSHYEFKR 286
>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
exonuclease [Serratia symbiotica str. Tucson]
gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
exonuclease [Serratia symbiotica str. Tucson]
Length = 933
Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats.
Identities = 122/290 (42%), Positives = 177/290 (61%), Gaps = 20/290 (6%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
++N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDA
Sbjct: 5 VENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAVVFDA 64
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L+ GVEADDVIGTLA +
Sbjct: 65 KGKTFRDELFAEYKSHRPPMPDDLRTQIEPLHKMVKAMGLPLLVTPGVEADDVIGTLALE 124
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + V+IST DKDMAQLV+ + LIN NN + + ++G+ PE I+D+ +L+
Sbjct: 125 AEMAGH-PVLISTGDKDMAQLVTPNVTLINTMNNTVLGPQEVCDKYGIPPELIIDFLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK--- 235
GD SDN+PGV +G KTA LL L+ + +N +I + + R A KL+
Sbjct: 184 GDASDNIPGVPGVGEKTAQALLQGLGRLDVLYDNLGSIATL---SFRGAKTMAAKLEQNK 240
Query: 236 -------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKT+ +L VS + L + D +L QLF +Y+ +
Sbjct: 241 EIAYLSYKLATIKTNVELE---VSYAD-LNMSAPDIDVLQQLFKRYEFKR 286
>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
Length = 929
Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats.
Identities = 122/288 (42%), Positives = 175/288 (60%), Gaps = 18/288 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYKPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP L QI +H+MVKA+G P+L I GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEEYKSHRPPMPDELRAQIEPLHKMVKAMGLPLLAISGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN NN I ++ ++G+ P ++D+ +L+G
Sbjct: 126 -EKAGQAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL +++I N + + + + + L K K
Sbjct: 185 DSSDNIPGVAGVGEKTAQALLQGLGGVKDIYANLDKVATLTFRGAKTMAAKLEKNKEMAL 244
Query: 236 ---KILTIKTDC--DLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +LT + +++ E P E+LL LF Y+ +
Sbjct: 245 LSYQLATIKTDVELELTSDQLTVKE-----PAVEELL-ALFKHYEFKR 286
>gi|397168981|ref|ZP_10492417.1| DNA polymerase I [Alishewanella aestuarii B11]
gi|396089568|gb|EJI87142.1| DNA polymerase I [Alishewanella aestuarii B11]
Length = 926
Score = 213 bits (542), Expect = 7e-53, Method: Composition-based stats.
Identities = 115/283 (40%), Positives = 167/283 (59%), Gaps = 10/283 (3%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS ++RA++A P + N GA+YG + ML+ L K Y+ T +A +FDAKG
Sbjct: 7 NPLILVDGSSYLFRAYHAPPHLTNSRGEATGAIYGVVNMLKSLLKQYQPTQMAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
FRN +Y YKA R MP +L QI +H++++A+G P+L I GVEADDVIGTLA+QA
Sbjct: 67 PTFRNEMYAEYKAHRPPMPDDLRSQIEPLHKIIRAMGLPLLCISGVEADDVIGTLARQAS 126
Query: 123 T--KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
+H L IST DKDMAQLV + LIN N + D +I +FG+ PE I+DY +L+
Sbjct: 127 AAGRHTL---ISTGDKDMAQLVDEHVTLINTMTNTLLDPPAVIEKFGIGPELIIDYLALM 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD DN+PG+ +G KTA LL S+ I + + G+ + + L + + L
Sbjct: 184 GDKVDNIPGLPGVGEKTAAALLQGLGSIAQIYQQLDQVAGLSFRGAKTMAAKLQEFEAQL 243
Query: 239 TIKTDCDLTKNIVSIP---ESLILQPKDEKLLMQLFNKYKLNK 278
+ + K V +P + L +QP D L +L+ + + +
Sbjct: 244 KLSYELATIKCDVELPCALDELQIQPADRAQLAELYRECEFKR 286
>gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
Length = 922
Score = 213 bits (542), Expect = 7e-53, Method: Composition-based stats.
Identities = 116/286 (40%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRA++A P + N P GA+YG + MLR L K Y +++A +FDAK
Sbjct: 11 QAPLILVDGSSYLYRAYHAPPHLTNSRGEPTGAVYGVVNMLRSLLKQYGPSHMAVVFDAK 70
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L QI +H +++A+G P++ I GVEADDVIGTLA+QA
Sbjct: 71 GKTFRDEIYAEYKAHRPPMPDDLRCQIEPLHAIIRALGLPLICISGVEADDVIGTLAQQA 130
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ + V+IST DKDMAQLV++KI LIN + + D + ++FGV PE I+D +++G
Sbjct: 131 EAEGH-DVLISTGDKDMAQLVTDKITLINTMTDTVMDVEGVHNKFGVGPELIIDLLAMMG 189
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D DN+PG+ +G KTA+ +L SLE I + + + + + + L + K+
Sbjct: 190 DKVDNIPGLPGVGEKTALAMLQGIGSLEAIYQDVDAVAALGFRGAKTMPKKLAEHKEAAF 249
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD +L + P L++ D L +L+ + +
Sbjct: 250 LSYTLATIKTDVELDQK----PSELLIGEADRDALAKLYGDLEFRR 291
>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
Length = 910
Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats.
Identities = 124/289 (42%), Positives = 177/289 (61%), Gaps = 22/289 (7%)
Query: 5 LLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
L+LVDGSS +YRAF+A D+R + P GA+ MLR L K Y + +A +FDAKG
Sbjct: 7 LILVDGSSYLYRAFFASQQADLRTSNGEPTGAIRVVTNMLRSLLKQYPDSVVAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K+FRN LY YK+ R MP +L QI IHQ++ A+G P+L+I GVEADDVIGTLA+QA
Sbjct: 67 KSFRNDLYAEYKSHRPPMPDDLRSQIEPIHQIIGAMGLPLLVIDGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
T+ + +IST DKDMAQLVS + L++ +++ DR +I +FGV PE IVDY +L+GD
Sbjct: 126 TESQIDTLISTGDKDMAQLVSEHVTLMDTMKDQLTDRQGVIDKFGVPPELIVDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
SDN+PG+ +G KTAV +L S++ I + + + + R A + K K
Sbjct: 186 SSDNIPGMAGVGDKTAVAVLQGVGSIDTIAAHPERVAEL---SFRGAKTFAAKFKEQEAM 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
++ TIKTD +L VS+ E L + +L+ L+ +++ L
Sbjct: 243 VRLSQQLATIKTDVELP---VSLAE-LRRHELQKDVLLALYRQFEFKNL 287
>gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
Length = 930
Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats.
Identities = 121/289 (41%), Positives = 171/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAEL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP L+ LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EELQVQPPAADDLLALFRQYEFKR 286
>gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR]
gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR]
Length = 921
Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats.
Identities = 122/292 (41%), Positives = 178/292 (60%), Gaps = 15/292 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +LVDGSS ++RAF+A P + N P GA+YG + MLR L K Y+ +++A +FDAK
Sbjct: 7 ENPFILVDGSSYLFRAFHAPPHLTNSKGEPTGAIYGVVNMLRSLLKRYKPSHMAVVFDAK 66
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L QI +H +V+A+G P+L I VEADDVIGTLA+QA
Sbjct: 67 GKTFRSDIYQDYKANRPPMPDDLRSQIKPLHDIVQAMGLPLLCIDDVEADDVIGTLARQA 126
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K +IST DKDMAQLV+ + LIN + + D + +FGV P +I+DY +L+G
Sbjct: 127 GDKGRF-TLISTGDKDMAQLVNEHVMLINTMTDTLMDPEGVEKKFGVKPNQIIDYLALMG 185
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVI---GKNLRFALN----WLP 232
D SDN+PG+ K+G KTA LL S++ I N + + + K++ LN L
Sbjct: 186 DSSDNIPGLPKVGEKTAQALLQSIPSIDAIYENVDAVTELSFRGAKSMPAKLNEYKEQLL 245
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLM 283
+++ TIK D + PE L +Q D + L +L+++ + + L+ LM
Sbjct: 246 MSRELATIKLDVAMDLQ----PEELKIQTADSEKLQELYSRCEFRRWLDELM 293
>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
Length = 928
Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats.
Identities = 120/290 (41%), Positives = 175/290 (60%), Gaps = 22/290 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLAQYNPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP L QI +H+MV+A+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDELRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K L V+IST DKDMAQLV+ I LIN +N I + ++GV P I+D+ +++G
Sbjct: 126 -EKKGLSVLISTGDKDMAQLVTPAITLINTMSNTILGPEEVEQKYGVPPALIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL S++ I +N + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADL---GFRGAKTMATKLEQNRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIP-ESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++P E L + + + L LF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVEL-----ALPCEELTVTEPNVEALQTLFSRYEFKR 286
>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Xenorhabdus nematophila ATCC 19061]
Length = 930
Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats.
Identities = 124/285 (43%), Positives = 173/285 (60%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ ++IA +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIIQYKPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ L+ YK+ R MP +L QI +H+MV A+G PIL+I GVEADDVIGTLA QA
Sbjct: 67 KTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVAAMGLPILVISGVEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
K V+IST DKDMAQLV+ I LIN N I +I ++GV E I+D+ +L+GD
Sbjct: 126 EKEGRSVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVIEKYGVPSELIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI--- 237
SDN+PGV +G KTA+ LL L+ I ++I + + + + + K++
Sbjct: 186 SSDNIPGVPGVGEKTALGLLQGIGGLDAIYARLDDIATLSFRGAKTLGGKMEQHKEVAYL 245
Query: 238 ----LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIKTD +L K+ + L + P D L+ LF+ Y+ +
Sbjct: 246 SYQLATIKTDVELDKHCI----ELSVVPPDADELLALFSHYEFKR 286
>gi|343495823|ref|ZP_08733935.1| DNA polymerase I [Vibrio nigripulchritudo ATCC 27043]
gi|342822158|gb|EGU56909.1| DNA polymerase I [Vibrio nigripulchritudo ATCC 27043]
Length = 929
Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats.
Identities = 115/279 (41%), Positives = 171/279 (61%), Gaps = 9/279 (3%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + + P A+YG + MLR + + + + IA +FDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFSSERIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +++++KA+G P++ + GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLYEVIKAMGLPLICVPGVEADDVIGTLAAQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + V+IST DKDMAQLV + LIN N + DR ++ +FG+ PE I+DY +L+GD
Sbjct: 126 SKAGMPVLISTGDKDMAQLVDENVTLINTMTNVVMDREGVVDKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PGV +G KTA LL L+ + +N ++I + + + KK++
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGVGGLDKLYDNLDDIAPLGFRGSK------TMAKKLIDN 239
Query: 241 KTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
K + L+ + +I + L E L + NK +L KL
Sbjct: 240 KDNAYLSYELATIKLDVELDVTAEGLKKETPNKDELIKL 278
>gi|374261140|ref|ZP_09619727.1| DNA polymerase I [Legionella drancourtii LLAP12]
gi|363538527|gb|EHL31934.1| DNA polymerase I [Legionella drancourtii LLAP12]
Length = 856
Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats.
Identities = 114/241 (47%), Positives = 161/241 (66%), Gaps = 3/241 (1%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
M++KL K+Y IA +FDAKGK FR+ YP YKA R MP L Q + Q++ +G
Sbjct: 1 MIKKLIKDYHPAEIAVVFDAKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLAIMGL 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRT 158
P+LII GVEADDVIGTLA+QA T+ + V+IST DKDMAQLV+ + LIN +N D
Sbjct: 61 PLLIIDGVEADDVIGTLARQA-TEQGIPVVISTGDKDMAQLVNEHVTLINTMSNYTMDVA 119
Query: 159 TIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
+ +FGV P +I+DY +L+GD SDN+PGV K GPKTAVK L++Y +L+N++ +++ I G
Sbjct: 120 GVKEKFGVEPAQIIDYLTLVGDTSDNIPGVSKCGPKTAVKWLSEYQTLDNLLAHSHEITG 179
Query: 219 VIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
IG+ LR ++ LP KK++TIKTD DL N+ + + + + +L+ +L K L +
Sbjct: 180 KIGEYLRASIPQLPLSKKLVTIKTDIDLPLNLGELHPKAVAKEQLIELVRELEFKNWLKE 239
Query: 279 L 279
L
Sbjct: 240 L 240
>gi|336450406|ref|ZP_08620857.1| DNA polymerase I [Idiomarina sp. A28L]
gi|336282801|gb|EGN76022.1| DNA polymerase I [Idiomarina sp. A28L]
Length = 944
Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats.
Identities = 113/275 (41%), Positives = 171/275 (62%), Gaps = 15/275 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+ +LVDGSS ++RAFYA P + N P GA+YG + MLR L K + T++A +FDAK
Sbjct: 6 KQPFILVDGSSYLFRAFYAPPHLTNSAGEPTGAIYGVVNMLRSLLKQFEPTHMAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FRN +Y YKA R MP +L QI +H +++A+G P++ I+GVEADDVIGTLA+QA
Sbjct: 66 GGTFRNEMYAEYKANRPPMPDDLRSQIEPLHNIIRAMGLPLISIEGVEADDVIGTLAQQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ +IST DKDMAQLV+ + LIN + + D + ++GV P++++D+ +L+G
Sbjct: 126 -AEEGRTCLISTGDKDMAQLVNEHVILINTMTSTVLDEAAVPEKYGVRPDQMIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL- 238
D SDN+PG+ +G KTA+K+L S+ +I N + + + + + + + + K IL
Sbjct: 185 DSSDNIPGLPGVGEKTALKMLEGMGSIAAMIENPDKLAELSFRGAKSMPDKVREHKDILL 244
Query: 239 ------TIKTDCDLTKNIVSIPESLIL-QPKDEKL 266
TIK D ++ +PE L L +P DE+L
Sbjct: 245 LSQALATIKLDVEME----LLPEQLTLNEPNDEEL 275
>gi|343500982|ref|ZP_08738867.1| DNA polymerase I [Vibrio tubiashii ATCC 19109]
gi|418478599|ref|ZP_13047698.1| DNA polymerase I [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342819561|gb|EGU54404.1| DNA polymerase I [Vibrio tubiashii ATCC 19109]
gi|384573754|gb|EIF04242.1| DNA polymerase I [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 930
Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats.
Identities = 124/293 (42%), Positives = 177/293 (60%), Gaps = 24/293 (8%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P+ + P A+YG + MLR + + + + IA +FDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPETMSNGEIPTNAVYGVVNMLRSMMRQFSSDRIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP +L QI +H +++A+G P++ GVEADDVIGTLA QA
Sbjct: 67 KTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICTPGVEADDVIGTLAYQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + + LIN N + DR ++ +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL------ 234
DN+PGV +G KTA LL + + +N ++I + R + KL
Sbjct: 186 KVDNIPGVPGVGDKTATALLQGIGGINKLYDNLDDIAPL---GFRGSKTMAKKLLDNEEN 242
Query: 235 ----KKILTIKTDCDLTKNIVSIPESLIL-QP-KDE--KLLMQLFNKYKLNKL 279
++ TIK D +L + PESL+ +P KDE KL QL K LN+L
Sbjct: 243 ARLSYELATIKLDVELEET----PESLLKNEPNKDELIKLYGQLVFKSWLNEL 291
>gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
HTCC2148]
gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
HTCC2148]
Length = 896
Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats.
Identities = 118/283 (41%), Positives = 170/283 (60%), Gaps = 20/283 (7%)
Query: 6 LLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNF 65
+LVDGSS +YRAF+ALP + N GA+ G I MLR+L K+Y + + +FDAKGK F
Sbjct: 1 MLVDGSSYVYRAFHALPPLTNSKGQATGAVKGVINMLRRLLKDYPESPVVGVFDAKGKTF 60
Query: 66 RNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKH 125
R+ LYP YKA R MP L QI IH +V+A+G P L ++GVEADDVIGTLA+QA ++
Sbjct: 61 RDDLYPEYKANRPSMPDELREQIVPIHSIVRAMGLPFLCVEGVEADDVIGTLARQA-SEQ 119
Query: 126 NLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSD 183
V+IST DKDMAQLV L+N + + D + +FG+ P I+D+ +L+GD D
Sbjct: 120 GRSVVISTGDKDMAQLVDKHTTLVNTMTDTVMDEAGVEQKFGIPPSLIIDFLALMGDKVD 179
Query: 184 NLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK-------- 235
N+PGV +G KTA+ LL SL++I + + + + + R A PKL+
Sbjct: 180 NIPGVAGVGEKTALGLLQGIGSLDDIYASLDKVAEL---SFRGAKTMAPKLEAEKANAYM 236
Query: 236 --KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
++ TIKTD +L + PE+L D + L++ + + +
Sbjct: 237 SYELATIKTDVELDQR----PEALANAEPDREALVEWYTQMEF 275
>gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179]
gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179]
Length = 925
Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats.
Identities = 124/298 (41%), Positives = 183/298 (61%), Gaps = 23/298 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
+N +LVDGSS +YRA++A + N P GA+YG + ML+ L K T+IA +FD
Sbjct: 6 ENPFVLVDGSSYLYRAYHANFRLGLSNSAGEPTGAMYGVLNMLKSLLKEVNPTHIAVVFD 65
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
AKGK FR+ ++ YK+ R MP +L QI +HQM++A+G P+LI++GVEADDVIGTLAK
Sbjct: 66 AKGKTFRDEMFEQYKSHRPPMPEDLRQQIQPLHQMIEALGLPLLIVEGVEADDVIGTLAK 125
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
QA + +V+IST DKDMAQLV +KI LIN N + DR +I ++ V PE I+D +L
Sbjct: 126 QA-SAAGREVLISTGDKDMAQLVDDKIMLINTMTNTLLDREGVIEKYEVPPELIIDLLAL 184
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL-KK 236
+GD SDN+PGV +G KTA+ LL + +I + + + + + + KL K
Sbjct: 185 MGDSSDNIPGVPSVGNKTAIALLQGLGGIADIYSQLDKVTDLPIRGAK-------KLADK 237
Query: 237 ILTIKTDCDLTKNIVSIP---------ESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+L K D DL+ + +I E L LQP++ L++ + +Y+ + LN L++
Sbjct: 238 LLAGKEDADLSYKLATIKTDVPLDVTFEQLTLQPENRDQLIEYYARYEFKRWLNELLN 295
>gi|392543155|ref|ZP_10290292.1| DNA polymerase I [Pseudoalteromonas piscicida JCM 20779]
Length = 918
Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats.
Identities = 113/286 (39%), Positives = 175/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS ++RA++A P + N GA+YG I ML+ L K Y+ +++ +FDAK
Sbjct: 6 QNPLILVDGSSYLFRAYHAPPHLTNSKGEATGAIYGVINMLKSLLKQYQPSHMVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FRN +Y YKA R MP +L QI IH+++KA+G P++ I GVEADDVIGT +K A
Sbjct: 66 GPTFRNEMYSEYKAHRPPMPDDLRTQIEPIHEIIKAMGLPLVSISGVEADDVIGTFSKIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV+ + LIN N I D ++ +FG+ P+ I+DY +L+G
Sbjct: 126 -SEQSRHVLISTGDKDMAQLVNEHVTLINTMTNTILDPEGVVDKFGIGPDLIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D DN+PGV +G KTA+ +L S++++ N + I + + K L L
Sbjct: 185 DKVDNIPGVPGVGEKTALAMLQGLGSIDSLYENLDKIADLGFRGSKTMAKKLEEHQAQLK 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK DC++ +++ E + D+ L++L+ + + +
Sbjct: 245 LSYELATIKLDCEVEQDL----EQFKIAEMDKDRLIELYGQCEFKR 286
>gi|383192259|ref|YP_005202387.1| DNA polymerase I [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371590517|gb|AEX54247.1| DNA polymerase I [Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 930
Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats.
Identities = 118/286 (41%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYAPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ + LIN NN I ++ ++GV P I+D+ +L+G
Sbjct: 126 -EQAGHAVLISTGDKDMAQLVTPGVTLINTMNNTILGPDEVVEKYGVPPSLIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + + + + + + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGIGGLDALYADLDKVSTLSFRGSKTMAAKLAENKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD L ++ E + +P ++ L QLF +Y+ +
Sbjct: 245 LSYQLATIKTDVKLD---LTCAELTVSEPNADE-LHQLFGRYEFKR 286
>gi|409203693|ref|ZP_11231896.1| DNA polymerase I [Pseudoalteromonas flavipulchra JG1]
Length = 918
Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats.
Identities = 113/286 (39%), Positives = 175/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS ++RA++A P + N GA+YG I ML+ L K Y+ +++ +FDAK
Sbjct: 6 QNPLILVDGSSYLFRAYHAPPHLTNSKGEATGAIYGVINMLKSLLKQYQPSHMVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FRN +Y YKA R MP +L QI IH+++KA+G P++ I GVEADDVIGT +K A
Sbjct: 66 GPTFRNEMYSEYKAHRPPMPDDLRTQIEPIHEIIKAMGLPLVSISGVEADDVIGTFSKIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + V+IST DKDMAQLV+ + LIN N I D ++ +FG+ P+ I+DY +L+G
Sbjct: 126 -SEQSRHVLISTGDKDMAQLVNEHVTLINTMTNTILDPEGVVDKFGIGPDLIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D DN+PGV +G KTA+ +L S++++ N + I + + K L L
Sbjct: 185 DKVDNIPGVPGVGEKTALAMLQGLGSIDSLYENLDKIADLGFRGSKTMAKKLEEHQAQLK 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK DC++ +++ E + D+ L++L+ + + +
Sbjct: 245 LSYELATIKLDCEVEQDL----EQFKIAEMDKDRLIELYGQCEFKR 286
>gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
Length = 937
Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats.
Identities = 121/288 (42%), Positives = 174/288 (60%), Gaps = 20/288 (6%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
+ + L+LVDGSS +YRA++ALP + N P GA+ G + MLR+L K+Y + IA +FDA
Sbjct: 28 VSSPLVLVDGSSYLYRAYHALPPLTNSKGQPTGAVKGVVNMLRRLRKDYPQSPIAVVFDA 87
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ L+ YKA R MP +L Q+ IH +V+A+G P+L+I+GVEADDVIGTLA+Q
Sbjct: 88 KGKTFRDELFAEYKANRPPMPEDLRPQVQPIHDIVQAMGLPLLVIEGVEADDVIGTLARQ 147
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T+ VIIST DKDMAQLV+ + L+N + + D + +++G PE ++DY +L+
Sbjct: 148 A-TEQKRDVIISTGDKDMAQLVNEHVTLVNTMTDSVLDIPGVHAKYGFGPELMIDYLALM 206
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL---- 234
GD DN+PGV +G KTA L+ SL+ I + ++ + + R A KL
Sbjct: 207 GDKVDNIPGVPGVGEKTAQGLIQGIGSLDAIYTDLEKVRSL---SFRGAKTMPEKLIEHR 263
Query: 235 ------KKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
++ TIKTD +L PE+L Q D L LF + +
Sbjct: 264 DMAYLSYQLATIKTDVELPMG----PEALHNQAADNAKLRVLFEEMEF 307
>gi|386311837|ref|YP_006008002.1| DNA polymerase I [Shewanella putrefaciens 200]
gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
Length = 922
Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats.
Identities = 115/286 (40%), Positives = 176/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +Y YKA R MP +L QI +H+++ A+G P++ I GVEADDVIGT+A+QA
Sbjct: 67 KTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIHALGLPLISIPGVEADDVIGTIARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ N V+IST DKDMAQLV I LIN + I + +++GV P++I+D+ +L+GD
Sbjct: 126 SRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI--------KGVIGKNLRFALNWLP 232
+DN+PG+ +G KTA+ +L S+ N++ N+ K + K + A + L
Sbjct: 186 KADNIPGLPGVGEKTALAMLTGAGSVANLLAAPENVSDLGFRGAKTMAAKIIENA-DMLR 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L +P D L++ +++ + +
Sbjct: 245 LSYELATIKTDVELEQDW----HELTAKPADRDELIKCYSEMEFKR 286
>gi|358410693|gb|AEU10079.1| DNA polymerase I [Photobacterium damselae subsp. piscicida]
Length = 923
Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats.
Identities = 116/288 (40%), Positives = 172/288 (59%), Gaps = 18/288 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N+L+L+DGSS +YRA++A P+ N + P GA+YG I MLR + + + +IA IFDAK
Sbjct: 6 ENSLILIDGSSYLYRAYHAAPNFTNSEGQPTGAVYGVINMLRSMLRQFSTEHIAVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YKA R MP +L QI +H ++KA+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEMFADYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGTLATQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K + V+IST DKDMAQLV I LIN + + D ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SKAGMPVLISTGDKDMAQLVDENITLINTMTDVVMDPAGVVEKFGIGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV +G KTA LL L+ + + + I + + + +P KK+L
Sbjct: 185 DKVDNIPGVPGVGEKTAKALLTGIGGLDALYDRLDEIPALGFRGSKT----MP--KKLLD 238
Query: 240 IKTDCDLTKNIVSI---------PESLILQPKDEKLLMQLFNKYKLNK 278
K L+ + +I P+ L+ D L +LF + + +
Sbjct: 239 NKEGAYLSYQLATIKLDVELDITPQELVKAEPDVDELTRLFGQLQFRR 286
>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
Length = 908
Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats.
Identities = 118/284 (41%), Positives = 173/284 (60%), Gaps = 20/284 (7%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRAF+ALP + P GA+ G + MLR+L K+Y + IA +FDAKGK
Sbjct: 6 LILVDGSSYLYRAFHALPPLTTSKGQPTGAIKGVVNMLRRLEKDYPESPIAVVFDAKGKT 65
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP +L Q+ +H++++A+G P+LI++GVEADDVIGTLA++ T+
Sbjct: 66 FRDDMYKDYKANRPPMPDDLRSQVEPLHELIRAMGLPLLIVEGVEADDVIGTLAREG-TE 124
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
L V++ST DKDMAQLV+ I L+N + + D + ++FG+ PE I+DY +L+GD
Sbjct: 125 KGLPVVVSTGDKDMAQLVNEHITLVNTMTDTVMDIEGVKAKFGIPPELIIDYLALMGDKV 184
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK------- 235
DN+PGV +G KTA+ LL L +I + I + + R + + KL+
Sbjct: 185 DNIPGVPGVGEKTALALLQNLGGLNDIYTRLDEIASL---SFRGSKSMAKKLEENRDNAY 241
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
++ TIKTD L I E L P D+ LM + + +
Sbjct: 242 LSYELATIKTDVPLELPI----EELKPAPADKAGLMNWYQELEF 281
>gi|392553088|ref|ZP_10300225.1| DNA polymerase I [Pseudoalteromonas spongiae UST010723-006]
Length = 912
Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats.
Identities = 113/260 (43%), Positives = 162/260 (62%), Gaps = 10/260 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA++A P + N GA+YG I ML+ L K Y +++ IFDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHAPPHLTNSKGEATGAIYGVINMLKSLVKQYSPSHMVVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FRN +Y YKA R MP +L QI IH ++KA+G P++ I GVEADDVIGTLAK+A
Sbjct: 66 GPTFRNDMYSEYKANRPPMPDDLRTQIEPIHNIIKAMGLPLISIPGVEADDVIGTLAKRA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V+IST DKDMAQLV + LIN N I D ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SEQKRHVLISTGDKDMAQLVDEHVTLINTMTNTIMDPAGVVDKFGIGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D DN+PGV +G KTA+ +L S++++ +N + I + + K L L
Sbjct: 185 DKVDNIPGVPGVGEKTALAMLQGLGSIDSLYDNLDKIADLGFRGSKTMSKKLEDNKEQLR 244
Query: 233 KLKKILTIKTDCDLTKNIVS 252
++ TIK D ++ +N+ S
Sbjct: 245 LSYELATIKLDVEVEQNLDS 264
>gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602]
gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602]
Length = 934
Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats.
Identities = 120/289 (41%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYTPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEQYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ + LIN NN I ++ ++GV P I+D+ +L+G
Sbjct: 126 -EQAGHAVLISTGDKDMAQLVTPGVTLINTMNNAILGPDEVVEKYGVPPSLIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + + + + + + R A KL
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGIGGLDALYADLDKVSTL---SFRGAKTMAAKLADNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD L ++ E + +P D L +LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVKLD---LTCAELTVSEP-DADELHKLFGRYEFKR 286
>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
Length = 922
Score = 210 bits (535), Expect = 4e-52, Method: Composition-based stats.
Identities = 115/285 (40%), Positives = 173/285 (60%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN LY YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A+QA
Sbjct: 67 KTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ N V+IST DKDMAQLV I LIN + I + +++GV P++I+D+ +L+GD
Sbjct: 126 SRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIK--GVIGKNLRFA-----LNWLPK 233
+DN+PG+ +G KTA+ +L S+ N++ + G G A + L
Sbjct: 186 KADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNADMLKL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L +P D L++ + + + +
Sbjct: 246 SYELATIKTDVELEQDW----HELTAKPADRDELIKCYGEMEFKR 286
>gi|333906557|ref|YP_004480143.1| DNA polymerase I [Marinomonas posidonica IVIA-Po-181]
gi|333476563|gb|AEF53224.1| DNA polymerase I [Marinomonas posidonica IVIA-Po-181]
Length = 922
Score = 210 bits (535), Expect = 4e-52, Method: Composition-based stats.
Identities = 125/285 (43%), Positives = 174/285 (61%), Gaps = 15/285 (5%)
Query: 2 QNT-LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
QNT ++LVDGSS +YRAF+A+P + + P A G I M+R L K Y + I IFDA
Sbjct: 8 QNTPMILVDGSSYLYRAFHAIPPLTTSEGQPTNAARGVISMIRSLIKTYPNSPIVVIFDA 67
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ +Y YKA R MP L LQI IH+M+ A+G P++II+GVEADDVIGT+AKQ
Sbjct: 68 KGKTFRDDIYSDYKAQRPPMPDELRLQIEPIHRMIDAMGLPLVIIEGVEADDVIGTIAKQ 127
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
V + VI+ST DKDMAQLV++K+ L+N + + D + +FG+ PE I+DY +L+
Sbjct: 128 -VGETGRDVIVSTGDKDMAQLVTDKVTLVNTMTDTVMDIQGVKDKFGIPPELIIDYLALM 186
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI-----KGVIGKNLRFALNW-LP 232
GD DN+PGV +G KTA+ LL SL++I N + I +G + A N +
Sbjct: 187 GDKVDNIPGVPGVGEKTALALLQGLGSLKDIYNRLDEIAALGFRGSKTMKQKMADNQEMA 246
Query: 233 KLKKIL-TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
+L +L TIK D +L N + + I D+ L + F K +
Sbjct: 247 ELSYVLATIKCDVELPFNALELQNKQI----DKDALREWFTKLEF 287
>gi|378581671|ref|ZP_09830315.1| DNA polymerase I [Pantoea stewartii subsp. stewartii DC283]
gi|377815585|gb|EHT98696.1| DNA polymerase I [Pantoea stewartii subsp. stewartii DC283]
Length = 927
Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats.
Identities = 119/289 (41%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y T++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLVQYSPTHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MV+A+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I + ++GV P I+D+ +++G
Sbjct: 126 -EKKGYSVLISTGDKDMAQLVTPAITLINTMTNTILGPEEVEQKYGVPPALIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL +++I +N + + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADL---SFRGAKTMATKLEQNRE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD L + E+L + D + L LF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVALDQPC----EALTVGEPDIQALQALFSRYEFRR 286
>gi|392546883|ref|ZP_10294020.1| DNA polymerase I [Pseudoalteromonas rubra ATCC 29570]
Length = 917
Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats.
Identities = 112/286 (39%), Positives = 173/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA++A P + N GA+YG I ML+ L K Y+ +++ +FDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHAPPHLTNSKGEATGAIYGVINMLKSLLKQYQPSHMVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FRN +Y YKA R MP +L QI IH +++A+G P++ I+GVEADDVIGT ++ A
Sbjct: 66 GPTFRNEMYSEYKAHRPPMPDDLRTQIAPIHDIIRAMGLPLVSIEGVEADDVIGTFSRLA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V+IST DKDMAQLV+ + LIN N I D ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SEQQRHVLISTGDKDMAQLVNEHVTLINTMTNTILDPQGVVDKFGIGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D DN+PGV +G KTA+ +L S++ + N + I + + K L L
Sbjct: 185 DKVDNIPGVPGVGEKTALAMLQGLGSIDELYANLDKIADLGFRGSKTMSKKLTENEAQLK 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK DC++ +++ E +Q D+ L+ L+ + + +
Sbjct: 245 LSYELATIKLDCEVEQDL----EQFKIQEMDKDQLIALYGQCEFKR 286
>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
102761]
Length = 923
Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats.
Identities = 116/288 (40%), Positives = 171/288 (59%), Gaps = 18/288 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+L+DGSS +YRA++A P+ N + P GA+YG I MLR + + + +IA IFDAK
Sbjct: 6 ENPLILIDGSSYLYRAYHAAPNFTNSEGQPTGAVYGVINMLRSMLRQFSTEHIAVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YKA R MP +L QI +H ++KA+G P++ I GVEADDVIGTLA QA
Sbjct: 66 GKTFRDEMFADYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGTLATQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K + V+IST DKDMAQLV I LIN + + D ++ +FG+ PE I+DY +L+G
Sbjct: 126 -SKAGMPVLISTGDKDMAQLVDENITLINTMTDVVMDPAGVVEKFGIGPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 239
D DN+PGV +G KTA LL L+ + + + I + + + +P KK+L
Sbjct: 185 DKVDNIPGVPGVGEKTAKALLTGIGGLDALYDRLDEIPALGFRGSKT----MP--KKLLD 238
Query: 240 IKTDCDLTKNIVSI---------PESLILQPKDEKLLMQLFNKYKLNK 278
K L+ + +I P+ L+ D L +LF + + +
Sbjct: 239 NKEGAYLSYQLATIKLDVELDITPQELVKAEPDVDELTRLFGQLQFRR 286
>gi|378765067|ref|YP_005193526.1| DNA polymerase I [Pantoea ananatis LMG 5342]
gi|386017735|ref|YP_005936034.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
gi|386077330|ref|YP_005990855.1| DNA polymerase I PolA [Pantoea ananatis PA13]
gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
gi|354986511|gb|AER30635.1| DNA polymerase I PolA [Pantoea ananatis PA13]
gi|365184539|emb|CCF07489.1| DNA polymerase I [Pantoea ananatis LMG 5342]
Length = 928
Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats.
Identities = 118/289 (40%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y T++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLVQYSPTHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MV+A+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV+ I LIN N I + ++GV P I+D+ +++G
Sbjct: 126 EKKGH-AVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVEQKYGVPPSLIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL +++I +N + + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADL---SFRGAKTMAAKLEQNRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + E+L + D L LF++++ +
Sbjct: 242 VAFLSYQLATIKTDVELDQPC----EALTVSEPDVNALQALFSRFEFKR 286
>gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2]
gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2]
Length = 956
Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats.
Identities = 114/274 (41%), Positives = 168/274 (61%), Gaps = 13/274 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+ ++LVDGSS +YRAF+ALP + P GA+ G MLRKL K+Y Y+A IFDAK
Sbjct: 42 EKPIILVDGSSYLYRAFHALPPLTTSSGQPTGAVRGVASMLRKLIKDYDPQYMAVIFDAK 101
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L Q+ +H +++A+G P++I GVEADDVIGT A+
Sbjct: 102 GKTFRDELFEEYKSNRPPMPDDLRAQVQPLHDLIRAMGLPLIIEDGVEADDVIGTFAR-I 160
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV+ + LIN NN ++D + +FGV PE I+D+ +L+G
Sbjct: 161 FGAQGKPVLISTGDKDMAQLVTEHVTLINTMNNALYDIEGVKQKFGVGPELIIDFLALMG 220
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D DN+PGV +G KTA+ L+ SLE+I N + I + + + L + K
Sbjct: 221 DKVDNIPGVPGVGEKTALGLIQGLGSLEDIYANLDKIAELSFRGAKTMAKKLEEHKEMAF 280
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKL 266
++ TIK DC+L++++ + + +P +E L
Sbjct: 281 LSYQLATIKLDCELSEDLNDLK---LGEPDNESL 311
>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
Length = 928
Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats.
Identities = 118/289 (40%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y T++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLVQYSPTHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MV+A+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K + V+IST DKDMAQLV+ I LIN N I + ++GV P I+D+ +++G
Sbjct: 126 EKKGH-AVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVEQKYGVPPSLIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL +++I +N + + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADL---SFRGAKTMAAKLEQNRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + E+L + D L LF++++ +
Sbjct: 242 VAFLSYQLATIKTDVELDQPC----EALTVSEPDVNALQALFSRFEFKR 286
>gi|398797234|ref|ZP_10556557.1| DNA polymerase I [Pantoea sp. GM01]
gi|398103354|gb|EJL93524.1| DNA polymerase I [Pantoea sp. GM01]
Length = 930
Score = 209 bits (533), Expect = 7e-52, Method: Composition-based stats.
Identities = 120/291 (41%), Positives = 175/291 (60%), Gaps = 24/291 (8%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLMQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVKAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N + + ++GV P I+D+ +++G
Sbjct: 126 -EKLGRSVLISTGDKDMAQLVTPAITLINTMTNTVLGPEEVEQKYGVPPTLIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL +++I +N + + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADL---SFRGAKTMAAKLEQNRD 241
Query: 236 ------KILTIKTDC--DLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD DLT + LI+ D + L LF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVALDLT------CDQLIVNEPDVEALQTLFSRYEFKR 286
>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
Length = 926
Score = 209 bits (533), Expect = 8e-52, Method: Composition-based stats.
Identities = 119/284 (41%), Positives = 171/284 (60%), Gaps = 20/284 (7%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
LLLVDGSS +YRAF+A+P + P GA+ G + MLRKL K+Y + IA IFDAKGK
Sbjct: 8 LLLVDGSSYLYRAFHAMPPLTTSSGQPTGAVRGVVNMLRKLAKDYPESPIAVIFDAKGKT 67
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP +L QI +H +++A+G P++I GVEADDVIGT A+QA T+
Sbjct: 68 FRDDIYSDYKANRPPMPDDLRAQIEPLHTIIRAMGLPLIIQDGVEADDVIGTYAQQA-TE 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKDMAQLVS + L+N + D + +FG+ P I+D+ +L+GD
Sbjct: 127 KGIPVVVSTGDKDMAQLVSEHVTLVNTMTETVMDIAGVNEKFGIPPSLIIDFLALMGDKV 186
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK------- 235
DN+PGV +G KTA+ LL S+E+I N + + + +R A + KL+
Sbjct: 187 DNIPGVPGVGEKTALALLQNLGSVEDIYANLDKVPTL---EVRGAKSLAKKLEDNRDKAF 243
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
++ TIK D +L ++ E LI D L+ LF + +
Sbjct: 244 LSYELATIKLDVELEHSL----EELIPVDPDNDALLALFTELEF 283
>gi|384260298|ref|YP_005404232.1| DNA polymerase I [Rahnella aquatilis HX2]
gi|380756274|gb|AFE60665.1| DNA polymerase I [Rahnella aquatilis HX2]
Length = 934
Score = 209 bits (533), Expect = 8e-52, Method: Composition-based stats.
Identities = 119/289 (41%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYTPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ ++ YK+ R MP +L QI +HQMVKA+G P+L++ GVEADDVIGTLA +A
Sbjct: 66 GKTFRDEIFEQYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ + LIN NN I ++ ++GV P I+D+ +L+G
Sbjct: 126 -EQAGHAVLISTGDKDMAQLVTPGVTLINTMNNAILGPDEVVEKYGVPPSLIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + + + + + + R A KL
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGIGGLDALYADLDKVSTL---SFRGAKTMAAKLADNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD L ++ E + +P D L +LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVKLD---LTCAELTVSEP-DADELHKLFGRYEFKR 286
>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
Length = 929
Score = 209 bits (533), Expect = 8e-52, Method: Composition-based stats.
Identities = 117/289 (40%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLMQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ +YK+ R MP +L QI +H+MVKA+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFENYKSHRPPMPDDLRAQIAPLHEMVKAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N + + ++GV P I+D+ +++G
Sbjct: 126 -EKQGRAVLISTGDKDMAQLVTPGITLINTMTNTVLGPEEVEQKYGVPPSLIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KT LL +++I +N + + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTTQALLQGLGGMQSIYDNLDKVADL---SFRGAKTMAAKLEQNRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L + D + L LF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVELELAC----EQLTVNEPDVEALQTLFSRYEFKR 286
>gi|392310092|ref|ZP_10272626.1| DNA polymerase I [Pseudoalteromonas citrea NCIMB 1889]
Length = 915
Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats.
Identities = 114/279 (40%), Positives = 170/279 (60%), Gaps = 14/279 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS ++RA+++ P + N GA+YG I ML+ L K Y +++ +FDAK
Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVINMLKSLLKQYSPSHMVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FRN +Y YKA R MP +L QI IH+++KA+G P++ I GVEADDVIGT AK A
Sbjct: 66 GPTFRNEMYSEYKANRPPMPDDLRTQIEPIHEIIKAMGLPLVCISGVEADDVIGTFAKIA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV + + LIN + I D ++ +FGV+PE I+DY +L+G
Sbjct: 126 -SGQKRHVLISTGDKDMAQLVDDHVTLINTMTDTILDPQGVVDKFGVAPELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D DN+PGV +G KTA+ +L S++N+ N + I G+ + K L L
Sbjct: 185 DKVDNIPGVPGVGEKTALAMLQGLGSIDNLYANLDQIAGLGFRGSKTMAKKLEEHKAQLT 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
++ TIK D D+ +++ + + ++ L++LF
Sbjct: 245 LSYELATIKLDVDVEQDL----NTFAITETNKDRLIELF 279
>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
Length = 922
Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats.
Identities = 115/285 (40%), Positives = 173/285 (60%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN LY YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A+QA
Sbjct: 67 KTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ N V+IST DKDMAQLV I LIN + I + +++GV P++I+D+ +L+GD
Sbjct: 126 SRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIK--GVIGKNLRFA-----LNWLPK 233
+DN+PG+ +G KTA+ +L S+ N++ + G G A + L
Sbjct: 186 KADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNADMLKL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L +P D L++ + + + +
Sbjct: 246 SYELATIKTDVELEQDW----HELEAKPADRDELIKCYGEMEFKR 286
>gi|336313795|ref|ZP_08568717.1| DNA polymerase I [Rheinheimera sp. A13L]
gi|335881734|gb|EGM79611.1| DNA polymerase I [Rheinheimera sp. A13L]
Length = 925
Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats.
Identities = 115/278 (41%), Positives = 168/278 (60%), Gaps = 14/278 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS ++RA+++ P + N GA+YG + ML+ L + Y+ + + +FDAKG
Sbjct: 7 NPLILVDGSSYLFRAYHSPPHLTNSKGEATGAIYGVVNMLKSLLRQYKPSQMVVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
FRN +Y YKA R MP +L QI +HQ+++A+G P++ I GVEADDVIGTLA QA
Sbjct: 67 PTFRNEMYSEYKAHRPPMPDDLRSQIAPLHQIIEAMGLPLICISGVEADDVIGTLAVQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ V+IST DKDMAQLV + LIN + I D + +FGV PE IVDY +L+GD
Sbjct: 126 SQQGRHVLISTGDKDMAQLVDQHVTLINTMTDTILDPAGVAEKFGVGPELIVDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL-- 238
SDN+PG+ +G KTA+ LL S+E + + I + + + + + K+ L
Sbjct: 186 KSDNIPGLPGVGEKTALALLQGIGSIEKLYQQLDQIAALNFRGSKTIAAKMTEFKEQLIL 245
Query: 239 -----TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
TIKTD +L+ +SL ++ D+ L +LF
Sbjct: 246 SYQLATIKTDVELSLQ----ADSLDIKTPDQSKLAELF 279
>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
gi|225204183|gb|EEG86537.1| DNA-directed DNA polymerase [Proteus penneri ATCC 35198]
Length = 949
Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 178/286 (62%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 23 ENPFILVDGSSYLYRAYHAFPPLTNSQGEPTGAMYGVLNMLRSLIIQYKPSHVAVVFDAK 82
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LY YK+ R MP +L QI +H+MV+A+G P+L I GVEADDVIGTLA +A
Sbjct: 83 GKTFRDELYEEYKSNRPPMPDDLREQIAPLHEMVQAMGLPLLSISGVEADDVIGTLALKA 142
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV+ KI LIN N I + ++GV PE I+D+ +L+G
Sbjct: 143 AADGR-DVLISTGDKDMAQLVTPKITLINTMTNVILGPDEVKEKYGVPPELIIDFLALMG 201
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI-----KGVIGKNLRFALNW-LPK 233
D SDN+PGV +G KTA+ LL SL++I +NI +G + A + + K
Sbjct: 202 DSSDNIPGVPGVGEKTALGLLQGLGSLDDIYQQLDNIATLSFRGAKTLGAKMAEHEKVAK 261
Query: 234 LK-KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
L K+ TIKTD +L K + L++ + + L+++F +Y+ +
Sbjct: 262 LSYKLATIKTDVELDKTF----DDLVVSEPNLEQLLEMFTRYEFKR 303
>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
Length = 922
Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats.
Identities = 115/285 (40%), Positives = 173/285 (60%), Gaps = 14/285 (4%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN LY YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A+QA
Sbjct: 67 KTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ N V+IST DKDMAQLV I LIN + I + +++GV P++I+D+ +L+GD
Sbjct: 126 SRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIK--GVIGKNLRFA-----LNWLPK 233
+DN+PG+ +G KTA+ +L S+ N++ + G G A + L
Sbjct: 186 KADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNADMLKL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L +P D L++ + + + +
Sbjct: 246 SYELATIKTDVELEQDW----HELEAKPADRDELIKCYGEMEFKR 286
>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
Length = 922
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 113/288 (39%), Positives = 173/288 (60%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +Y YKA R MP +L QI +H+++ A+G P++ I GVEADDVIGT+A+QA
Sbjct: 67 KTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIHALGLPLISIPGVEADDVIGTIARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ N V+IST DKDMAQLV I LIN + I + +++GV P++I+D+ +L+GD
Sbjct: 126 SRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
+DN+PG+ +G KTA+ +L S+ N++ + + R A K+
Sbjct: 186 KADNIPGLPGVGEKTALAMLTGAGSVANLLAAPEKVSDL---GFRGAKTMAAKITENADM 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L +P D L++ +++ + +
Sbjct: 243 LRLSYELATIKTDVELEQDW----HELTAKPADRDELIKCYSEMEFKR 286
>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter daltonii FRC-32]
gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter daltonii FRC-32]
Length = 891
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 112/280 (40%), Positives = 171/280 (61%), Gaps = 13/280 (4%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L L+DGSS IYRA+YA+ + + FP ALYG I+ML K+ K+ + ++A +FDA
Sbjct: 7 LYLIDGSSYIYRAYYAIRHLSSPKGFPTNALYGFIQMLLKVVKDRKPDHLAVVFDAGKLT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN +YP+YKA R MP +L LQI I + V+A P+L + G EADD+IGT+A K
Sbjct: 67 FRNEIYPAYKANRSAMPDDLRLQIEPIKEAVRAFRIPVLELPGFEADDIIGTIACDC-EK 125
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ +I T DKD+ Q+V++ + L++ +K ++ RFGV PE++VD +L GD S
Sbjct: 126 KGMAAVIVTGDKDLMQIVTDSVTLLDTMKDKASGPAEVVERFGVPPERVVDILALAGDSS 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
DN+PG+ IG KTA+KL+ +++SL+ ++ NA+ +KG +G+ LR + +++ TI
Sbjct: 186 DNIPGIPGIGEKTAIKLIQEHHSLDQLLENASVVKGKVGERLREFADQARLSRRLATI-- 243
Query: 243 DCDLTKNIVSIPES---LILQPKDEKLLMQLFNKYKLNKL 279
+C+ V +P S P D +LL LF +Y L
Sbjct: 244 ECN-----VPVPYSYGDFAASPPDNRLLGDLFREYGFTTL 278
>gi|373947471|ref|ZP_09607432.1| DNA polymerase I [Shewanella baltica OS183]
gi|386326680|ref|YP_006022797.1| DNA polymerase I [Shewanella baltica BA175]
gi|333820825|gb|AEG13491.1| DNA polymerase I [Shewanella baltica BA175]
gi|373884071|gb|EHQ12963.1| DNA polymerase I [Shewanella baltica OS183]
Length = 921
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 114/287 (39%), Positives = 175/287 (60%), Gaps = 16/287 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAK
Sbjct: 6 KNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLTRYQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A+QA
Sbjct: 66 GKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPLISISGVEADDVIGTIARQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ N V+IST DKDMAQLV + LIN + I + +FGV P++I+D +L+G
Sbjct: 126 -SLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDLLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI--------KGVIGKNLRFALNWL 231
D +DN+PG+ +G KTA+ +L S+ N++ + K + K + A + L
Sbjct: 185 DKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIENA-DML 243
Query: 232 PKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L ++P D+ L++ + + + +
Sbjct: 244 KLSYELATIKTDVELEQDW----HELTIKPADKDELIKCYGEMEFKR 286
>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
gi|386338986|ref|YP_006035352.1| DNA polymerase I [Shewanella baltica OS117]
gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
gi|334861387|gb|AEH11858.1| DNA polymerase I [Shewanella baltica OS117]
Length = 921
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 114/287 (39%), Positives = 175/287 (60%), Gaps = 16/287 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAK
Sbjct: 6 KNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLTRYQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A+QA
Sbjct: 66 GKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPLISISGVEADDVIGTIARQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ N V+IST DKDMAQLV + LIN + I + +FGV P++I+D +L+G
Sbjct: 126 -SLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDLLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI--------KGVIGKNLRFALNWL 231
D +DN+PG+ +G KTA+ +L S+ N++ + K + K + A + L
Sbjct: 185 DKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIENA-DML 243
Query: 232 PKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L ++P D+ L++ + + + +
Sbjct: 244 KLSYELATIKTDVELEQDW----HELTIKPADKDELIKCYGEMEFKR 286
>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
gi|378710795|ref|YP_005275689.1| DNA polymerase I [Shewanella baltica OS678]
gi|418022904|ref|ZP_12661890.1| DNA polymerase I [Shewanella baltica OS625]
gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
gi|353537906|gb|EHC07462.1| DNA polymerase I [Shewanella baltica OS625]
Length = 921
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 114/287 (39%), Positives = 175/287 (60%), Gaps = 16/287 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAK
Sbjct: 6 KNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLTRYQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A+QA
Sbjct: 66 GKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPLISISGVEADDVIGTIARQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ N V+IST DKDMAQLV + LIN + I + +FGV P++I+D +L+G
Sbjct: 126 -SLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDLLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI--------KGVIGKNLRFALNWL 231
D +DN+PG+ +G KTA+ +L S+ N++ + K + K + A + L
Sbjct: 185 DKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIENA-DML 243
Query: 232 PKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L ++P D+ L++ + + + +
Sbjct: 244 KLSYELATIKTDVELEQDW----HELTIKPADKDELIKCYGEMEFKR 286
>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
Length = 921
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 114/287 (39%), Positives = 175/287 (60%), Gaps = 16/287 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAK
Sbjct: 6 KNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLTRYQPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A+QA
Sbjct: 66 GKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPLISISGVEADDVIGTIARQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ N V+IST DKDMAQLV + LIN + I + +FGV P++I+D +L+G
Sbjct: 126 -SLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDLLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI--------KGVIGKNLRFALNWL 231
D +DN+PG+ +G KTA+ +L S+ N++ + K + K + A + L
Sbjct: 185 DKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIENA-DML 243
Query: 232 PKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L ++P D+ L++ + + + +
Sbjct: 244 KLSYELATIKTDVELEQDW----HELTIKPADKDELIKCYGEMEFKR 286
>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
Length = 922
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 114/286 (39%), Positives = 175/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +Y YKA R MP +L QI +H+++ A+G P++ I GVEADDVIGT+A+QA
Sbjct: 67 KTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIHALGLPLISIPGVEADDVIGTIARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ N V+IST DKDMAQLV I LIN + I + +++GV P++I+D+ +L+GD
Sbjct: 126 SRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI--------KGVIGKNLRFALNWLP 232
+DN+PG+ +G KTA+ +L S+ N++ + K + K + A + L
Sbjct: 186 KADNIPGLPGVGEKTALAMLTGAGSVANLLAAPEKVSDLGFRGAKTMAAKIIENA-DMLR 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L +P D L++ +++ + +
Sbjct: 245 LSYELATIKTDVELEQDW----HELTAKPADRDELIKCYSEMEFKR 286
>gi|407698144|ref|YP_006822932.1| DNA polymerase I superfamily [Alcanivorax dieselolei B5]
gi|407255482|gb|AFT72589.1| DNA polymerase I superfamily [Alcanivorax dieselolei B5]
Length = 921
Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats.
Identities = 112/253 (44%), Positives = 159/253 (62%), Gaps = 10/253 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS +YRAF+ALP + + P GA+ G MLRKL K+Y Y+A +FDAKGK
Sbjct: 7 IILVDGSSYLYRAFHALPPLTTSNGQPTGAVRGVASMLRKLIKDYDPEYMAVVFDAKGKT 66
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L+ YKA R MP L Q+ +H +++A+G P+++ +GVEADDVIGT A+Q
Sbjct: 67 FRDELFEEYKANRPPMPDELREQVQPLHDLIRAMGLPLIVEEGVEADDVIGTFARQ-FGG 125
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
V+IST DKDMAQLV+ K+ LIN + + D + ++FGV PE I+D+ +L+GD
Sbjct: 126 EGKDVLISTGDKDMAQLVNGKVTLINTMTDTLFDVDGVKNKFGVGPELIIDFLALMGDKV 185
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNAN-----NIKG--VIGKNLRFALNWLPKLK 235
DN+PGV +G KTA+ LL S+E I N + +++G +GK L
Sbjct: 186 DNIPGVPGVGEKTALALLQGLGSMEQIYANLDKVAELSVRGAKTLGKKLEEHREQAFLSY 245
Query: 236 KILTIKTDCDLTK 248
K+ TIK DC+L +
Sbjct: 246 KLATIKVDCELKE 258
>gi|410634866|ref|ZP_11345493.1| DNA polymerase I [Glaciecola lipolytica E3]
gi|410145610|dbj|GAC12698.1| DNA polymerase I [Glaciecola lipolytica E3]
Length = 926
Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats.
Identities = 116/288 (40%), Positives = 173/288 (60%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N +LVDGSS ++RAF+ +P + N GA+YG + MLR L + Y T++A IFDAKG
Sbjct: 7 NPFILVDGSSYLFRAFHGMPPLTNSKGQDTGAIYGVVNMLRSLMQQYSPTHMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +YP YKA R MP L QI +H ++KA+G P+++ +GVEADDVIGTLA+QA
Sbjct: 67 KTFRDDIYPEYKANRPPMPDELRSQIAPLHAIIKAMGLPLIVEEGVEADDVIGTLAQQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
T + +IST DKDMAQLV+ + LIN NN I D ++ +FG+ I+D+ +L GD
Sbjct: 126 TDQGIPTLISTGDKDMAQLVNQHVTLINTMNNHIMDEEGVVEKFGIPANLIIDFLALKGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK----- 235
DN+PGV +G K+A+ LL S+ +I NN + I + R A K++
Sbjct: 186 KVDNIPGVPGVGDKSALGLLQGIGSINDIYNNLDKIAAL---EFRGAKKMADKMREFETQ 242
Query: 236 -----KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK D +L + + +P +++L+ +LF +Y+ +
Sbjct: 243 ARLSYELATIKLDVELEFGPTELTPT---EPSNDELI-ELFREYEFKR 286
>gi|398796189|ref|ZP_10555817.1| DNA polymerase I [Pantoea sp. YR343]
gi|398204041|gb|EJM90853.1| DNA polymerase I [Pantoea sp. YR343]
Length = 930
Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats.
Identities = 116/289 (40%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + ML+ L Y+ +++A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLMQYQPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P+L + GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVKAMGLPLLAVSGVEADDVIGTLALEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N + + ++GV P I+D+ +++G
Sbjct: 126 -EKLGRPVLISTGDKDMAQLVTPAITLINTMTNTVLGPEEVEQKYGVPPALIIDFLAMMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL +++I +N + + + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADL---SFRGAKTMAAKLEQNRD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L + L++ + + L LF++Y+ +
Sbjct: 242 VAFLSYQLATIKTDVELDLTC----DQLVVNEPNVEALQTLFSRYEFKR 286
>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
Length = 935
Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats.
Identities = 114/287 (39%), Positives = 175/287 (60%), Gaps = 16/287 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAK
Sbjct: 20 KNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLTRYQPSHIAVVFDAK 79
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A+QA
Sbjct: 80 GKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPLISISGVEADDVIGTIARQA 139
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ N V+IST DKDMAQLV + LIN + I + +FGV P++I+D +L+G
Sbjct: 140 -SLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDLLALMG 198
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI--------KGVIGKNLRFALNWL 231
D +DN+PG+ +G KTA+ +L S+ N++ + K + K + A + L
Sbjct: 199 DKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIENA-DML 257
Query: 232 PKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L ++P D+ L++ + + + +
Sbjct: 258 KLSYELATIKTDVELEQDW----HELTIKPADKDELIKCYGEMEFKR 300
>gi|24376141|ref|NP_720184.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
gi|24351181|gb|AAN57628.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
Length = 922
Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats.
Identities = 114/286 (39%), Positives = 175/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN LY YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A++A
Sbjct: 67 KTFRNDLYQEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIARRA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ N V+IST DKDMAQLV I LIN + I + +++GV P++I+D+ +L+GD
Sbjct: 126 SRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI--------KGVIGKNLRFALNWLP 232
+DN+PG+ +G KTA+ +L S+ N++ + K + K + A + L
Sbjct: 186 KADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVSELAFRGSKTMAAKIIDNA-DMLR 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L +P D L++ + + + +
Sbjct: 245 LSYELATIKTDVELEQDW----HELTAKPADRDELIKCYGEMEFKR 286
>gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55]
gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55]
Length = 930
Score = 207 bits (528), Expect = 3e-51, Method: Composition-based stats.
Identities = 122/289 (42%), Positives = 171/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I ++S++GV PE I+D+ +L+G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVSKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAAL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP L+ LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EELEVQPPAADDLLALFRQYEFKR 286
>gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342]
gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22]
gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342]
gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22]
Length = 930
Score = 207 bits (528), Expect = 3e-51, Method: Composition-based stats.
Identities = 122/289 (42%), Positives = 171/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I ++S++GV PE I+D+ +L+G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVSKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAAL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP L+ LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EELEVQPPAADDLLALFRQYEFKR 286
>gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36]
gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36]
Length = 931
Score = 207 bits (528), Expect = 4e-51, Method: Composition-based stats.
Identities = 105/216 (48%), Positives = 143/216 (66%), Gaps = 3/216 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS ++RA+++ P + N + GA+YG + ML+ L + ++IA IFDAKG
Sbjct: 7 NPLVLVDGSSYLFRAYHSPPHLTNAEGMATGAVYGVVNMLKSLLTQFDPSHIAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
FRN +YP YKA R MP +L QI +H+ VKA+G P++ I GVEADDVIGT+AKQA
Sbjct: 67 PTFRNEMYPEYKANRPPMPDDLRCQIEPVHKAVKALGLPLICISGVEADDVIGTIAKQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V+IST DKDMAQLV + LIN + + D + +FGV PE I+D L+GD
Sbjct: 126 SAEGRAVLISTGDKDMAQLVDENVTLINTMTDTVLDPQGVKDKFGVPPELIIDLLGLMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
SDN+PGV +G KTA+ LL S+++I NN + I
Sbjct: 186 ASDNIPGVPGVGAKTALGLLQGLGSIKDIYNNLDAI 221
>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
Length = 930
Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats.
Identities = 105/213 (49%), Positives = 142/213 (66%), Gaps = 3/213 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA+YA P + N GA+YG I MLR L Y+ T +A +FDAK
Sbjct: 20 ENPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPTQMAVVFDAK 79
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A+QA
Sbjct: 80 GKTFRNEMYAEYKAHRPPMPDDLRTQIEPLHRIIRALGLPLVCIPGVEADDVIGTIARQA 139
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ V+IST DKDMAQLV +KI LIN N I + +FGV PE I+D +L G
Sbjct: 140 -SQEGRAVLISTGDKDMAQLVDDKITLINTMTNTILGPDEVSEKFGVGPELIIDLLALQG 198
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINN 212
D +DN+PG+ +G KTA+ +L +E I+ N
Sbjct: 199 DKADNIPGLPGVGEKTALAMLQGVGGVEAILAN 231
>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
Length = 918
Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats.
Identities = 115/286 (40%), Positives = 176/286 (61%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y ++IA +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYSPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +Y YKA R MP +L QI +H+++ A+G P++ I GVEADDVIGT+A QA
Sbjct: 67 KTFRNDMYGEYKAQRPPMPDDLRNQIEPLHRIIHAMGLPLISISGVEADDVIGTIALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K +IST DKDMAQLV+ + LIN + I + +++GV P++I+D+ +L+GD
Sbjct: 126 SKEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVKTKYGVGPDRIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI--------KGVIGKNLRFALNWLP 232
SDN+PG+ +G KTA+ +L S+ENI+ + ++ K + K + A + L
Sbjct: 186 KSDNIPGLPGVGEKTALAMLLGMGSVENILADPQSVVEVGFRGSKTMPAKIIENA-DMLK 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + ++P+D L++ F + + +
Sbjct: 245 LSYELATIKTDVELAQDW----HQMTVKPQDRDELIKSFGEMEFKR 286
>gi|336309600|ref|ZP_08564584.1| DNA polymerase I [Shewanella sp. HN-41]
gi|335866911|gb|EGM71853.1| DNA polymerase I [Shewanella sp. HN-41]
Length = 920
Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats.
Identities = 116/286 (40%), Positives = 172/286 (60%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLTRYQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN LY YKA R MP +L QI +++++ A+G P++ I GVEADDVIGT+A+QA
Sbjct: 67 KTFRNDLYDEYKAHRPPMPDDLRSQIEPLYRIIHALGLPLISIPGVEADDVIGTIARQAS 126
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ V+IST DKDMAQLV + I LIN + I + +FGV PE+I+D +L+GD
Sbjct: 127 LEKR-SVLISTGDKDMAQLVDDNITLINTMTDTIMGPKEVTEKFGVGPERIIDLLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI--------KGVIGKNLRFALNWLP 232
+DN+PG+ +G KTA+ +L S+ N++ + K + K + A + L
Sbjct: 186 KADNIPGLPGVGEKTALAMLTGAGSVNNLLAEPEKVSELGFRGAKTMAAKIIENA-DMLK 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ L ++P D L+Q + + + +
Sbjct: 245 LSYELATIKTDVELEQDW----HELTVKPADRDELIQCYGEMEFKR 286
>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
Length = 918
Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats.
Identities = 106/210 (50%), Positives = 140/210 (66%), Gaps = 3/210 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG I MLR L Y+ T +A +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPTQMAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +Y YKA R MP +L QI +H+++KA+G P++ I GVEADDVIGT+A QA
Sbjct: 67 KTFRNEMYSEYKAQRPPMPDDLRNQIEPLHRIIKALGLPLVCISGVEADDVIGTIATQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K V+IST DKDMAQLV + I LIN N I + +FGV PE+I+D +L GD
Sbjct: 126 SKEGRAVLISTGDKDMAQLVDDNITLINTMTNTIMGPAEVTEKFGVGPERIIDLLALQGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENII 210
+DN+PG+ +G KTA+ +L S+ NI+
Sbjct: 186 KADNIPGLPGVGEKTALAMLTGVGSVANIL 215
>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
Length = 919
Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats.
Identities = 115/281 (40%), Positives = 171/281 (60%), Gaps = 14/281 (4%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS +YRAF+A+P + D P A G I M+R L Y + I IFDAKGK
Sbjct: 10 MVLVDGSSYLYRAFHAIPPLTTSDGQPTNAARGVISMIRSLIGKYPESPIVVIFDAKGKT 69
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP +L LQI IH+M++A+G P++II+GVEADDVIGT+AKQ V +
Sbjct: 70 FRDEIYSEYKAQRPPMPDDLRLQIEPIHRMIEAMGLPLVIIEGVEADDVIGTIAKQ-VGE 128
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
VI+ST DKDMAQLV++K+ L+N + + D + +FG+ PE I+DY +L+GD
Sbjct: 129 AGRDVIVSTGDKDMAQLVTDKVTLVNTMTDTVMDIAGVKDKFGIPPELIIDYLALMGDKV 188
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI-------KGVIGKNLRFALNWLPKLK 235
DN+PGV +G KTA+ LL S+++I ++I + K + +
Sbjct: 189 DNIPGVPGVGEKTALALLQGIGSIKDIYERLDDIAPLGFRGSKTMSKKMEDNRDMAELSY 248
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
+ TIK D +L ++ +L +P ++++L + F K +
Sbjct: 249 TLATIKCDVELPFDM----HALKNEPANKEVLREWFQKLEF 285
>gi|410629263|ref|ZP_11339967.1| DNA polymerase I [Glaciecola mesophila KMM 241]
gi|410151059|dbj|GAC26736.1| DNA polymerase I [Glaciecola mesophila KMM 241]
Length = 928
Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats.
Identities = 116/288 (40%), Positives = 171/288 (59%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N +LVDGSS ++RAF+ +P + N GA+YG I MLR L K + T++A +FDAKG
Sbjct: 15 NPFILVDGSSYLFRAFHGMPPLTNSKGQDTGAIYGVINMLRSLIKQFSPTHMAVVFDAKG 74
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L QI +H++++A+G PI++ GVEADDVIGTLA QA
Sbjct: 75 KTFRDDIYSEYKANRPSMPEELRSQIEPLHKIIRAMGLPIIVESGVEADDVIGTLADQA- 133
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + +IST DKDMAQLV+ + LIN NN + D ++ +FG+ PE ++D+ +L GD
Sbjct: 134 SKLGIPTLISTGDKDMAQLVNEHVTLINTMNNHVMDPQGVVEKFGIPPELVIDFLALKGD 193
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK---- 236
DN+PGV +G K+A+ LL S+ +I N + I + + R A K+++
Sbjct: 194 KVDNIPGVPGVGDKSALGLLQGIGSINDIYENLDKIASL---DFRGAKKMADKMREYEEQ 250
Query: 237 ------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIK D ++ N P SL D +L +LF + + +
Sbjct: 251 ARLSYTLATIKLDVEMDCN----PTSLSPIAADYAVLKELFAELEFKR 294
>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
Length = 962
Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats.
Identities = 127/295 (43%), Positives = 182/295 (61%), Gaps = 19/295 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRAF+ + N P GA+YG + MLR L ++IA +FDAK
Sbjct: 6 QNPLVLVDGSSYLYRAFHVFNYLTNSGGEPTGAMYGVLNMLRSLVNQVNPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP L QI +H +++A+G P++ I+GVEADDVIGTLA QA
Sbjct: 66 GKTFRDDLFEQYKSHRPPMPDELRAQIQPLHNIIRALGIPLISIEGVEADDVIGTLAVQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ +V+IST DKDMAQLV+ I LIN N+ + DR +I ++G+ PE I+DY +L G
Sbjct: 126 -AQDGKEVLISTGDKDMAQLVNQHIMLINTMNDSLLDREGVIEKYGIPPELIIDYLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D SDN+PGVK IG KTA+ LL SL+ I N + + + + + L K+
Sbjct: 185 DASDNIPGVKGIGEKTALALLQGIGSLQTIYANLDRVATLSVRGAKTLATKLVAEKQAAD 244
Query: 237 ----ILTIKTDC--DLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD D+T + ++ P + Q ++E L+ LF +Y+ + LN +M+
Sbjct: 245 LSYLLATIKTDVALDMTHHQLT-PSA---QRREE--LIALFERYEFKRWLNDVMN 293
>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
Length = 928
Score = 206 bits (525), Expect = 6e-51, Method: Composition-based stats.
Identities = 116/288 (40%), Positives = 171/288 (59%), Gaps = 20/288 (6%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N +LVDGSS ++RAF+ +P + N GA+YG I MLR L K + T++A +FDAKG
Sbjct: 15 NPFILVDGSSYLFRAFHGMPPLTNSKGQDTGAIYGVINMLRSLIKQFSPTHMAVVFDAKG 74
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L QI +H++++A+G PI++ GVEADDVIGTLA QA
Sbjct: 75 KTFRDDIYKEYKANRPSMPEELRSQIEPLHKIIRAMGLPIIVESGVEADDVIGTLADQA- 133
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + +IST DKDMAQLV+ + LIN NN + D ++ +FG+ PE ++D+ +L GD
Sbjct: 134 SKLGIPTLISTGDKDMAQLVNEHVTLINTMNNHVMDPQGVVEKFGIPPELVIDFLALKGD 193
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK---- 236
DN+PGV +G K+A+ LL S+ +I N + I + + R A K+++
Sbjct: 194 KVDNIPGVPGVGDKSALGLLQGIGSINDIYENLDKIASL---DFRGAKKMADKMREYEEQ 250
Query: 237 ------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIK D ++ N P SL D +L +LF + + +
Sbjct: 251 ARLSYTLATIKLDVEMDCN----PTSLSPVAADYSVLKELFAELEFKR 294
>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
Length = 917
Score = 206 bits (525), Expect = 7e-51, Method: Composition-based stats.
Identities = 116/286 (40%), Positives = 168/286 (58%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA+Y+ P + N GA+YG I MLR L K Y T +A +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAYYSPPHLTNSKGEATGAVYGVINMLRSLLKQYEPTQMAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT++ QA
Sbjct: 66 GKTFRNDMYEDYKAQRPPMPDDLRTQIEPLHRIIRAMGLPLVCISGVEADDVIGTISTQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K V+IST DKDMAQLV + LIN N I + +FGV PE I+D +L G
Sbjct: 126 -SKSGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPAEVTEKFGVGPELIIDLLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL- 238
D SDN+PG+ +G KTAV +L ++ I+ + + + + L + +IL
Sbjct: 185 DKSDNIPGLPGVGEKTAVAMLTGAGGIDKILAAPEKMPELGFRGSKTMPAKLAEHSEILK 244
Query: 239 ------TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIK D +L ++ + L ++P D L++ F + + +
Sbjct: 245 LSYALATIKLDVELEQDW----QDLTIKPADRDELIECFGEMEFKR 286
>gi|410664861|ref|YP_006917232.1| DNA polymerase I [Simiduia agarivorans SA1 = DSM 21679]
gi|409027218|gb|AFU99502.1| DNA polymerase I [Simiduia agarivorans SA1 = DSM 21679]
Length = 915
Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats.
Identities = 118/283 (41%), Positives = 174/283 (61%), Gaps = 20/283 (7%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M ++LVDGSS +YRAF+ALP + N P GA+ G I M+R+L K+Y + + +FDA
Sbjct: 1 MTAPVVLVDGSSYLYRAFHALPPLTNSKGMPTGAVKGVINMIRRLLKDYPGSPVVVVFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
KGK FR+ ++P YKA R MP +L Q+ IH +V+A+G P+L+ +GVEADDVIGT +Q
Sbjct: 61 KGKTFRDDMFPDYKAQRPPMPDDLRPQVQPIHDIVRAMGLPLLVEEGVEADDVIGTYCQQ 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A T + VI+ST DKDMAQLV+ + L+N + + D + ++FG+ P I+D+ +L+
Sbjct: 121 A-TAAGIPVIVSTGDKDMAQLVNEHVTLVNTMTDTVMDPAGVEAKFGLPPSLIIDFLALM 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK-- 236
GD DN+PGV +G KTA+ LL SL++I N + +K + + R A KL++
Sbjct: 180 GDKVDNIPGVPGVGEKTALGLLQGLGSLDSIYANLDKVKDL---SFRGAKTMAAKLEEHK 236
Query: 237 --------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
+ TIK DCDL + I ++L D+ L+ LF
Sbjct: 237 DKAYMSYALATIKLDCDLPEPI----QALANGEPDKARLLALF 275
>gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|424931031|ref|ZP_18349403.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|449059711|ref|ZP_21737397.1| DNA polymerase I [Klebsiella pneumoniae hvKP1]
gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|407805218|gb|EKF76469.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|448874596|gb|EMB09637.1| DNA polymerase I [Klebsiella pneumoniae hvKP1]
Length = 930
Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats.
Identities = 121/289 (41%), Positives = 171/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAEL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP L+ LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EELEVQPPAADDLLALFRQYEFKR 286
>gi|386037302|ref|YP_005957215.1| DNA polymerase I [Klebsiella pneumoniae KCTC 2242]
gi|424833131|ref|ZP_18257859.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|425094967|ref|ZP_18498047.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|339764430|gb|AEK00651.1| DNA polymerase I [Klebsiella pneumoniae KCTC 2242]
gi|405609171|gb|EKB82051.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|414710580|emb|CCN32284.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
Length = 930
Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats.
Identities = 121/289 (41%), Positives = 171/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAEL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP L+ LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EELEVQPPAADDLLALFRQYEFKR 286
>gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 927
Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats.
Identities = 121/289 (41%), Positives = 171/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAEL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP L+ LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EELEVQPPAADDLLALFRQYEFKR 286
>gi|428932828|ref|ZP_19006397.1| DNA polymerase I [Klebsiella pneumoniae JHCK1]
gi|426306738|gb|EKV68835.1| DNA polymerase I [Klebsiella pneumoniae JHCK1]
Length = 930
Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats.
Identities = 121/289 (41%), Positives = 171/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAEL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP L+ LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EELEVQPPAADDLLALFRQYEFKR 286
>gi|365144392|ref|ZP_09348655.1| DNA polymerase I [Klebsiella sp. 4_1_44FAA]
gi|419975303|ref|ZP_14490715.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|419981063|ref|ZP_14496342.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|419986392|ref|ZP_14501525.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|419991989|ref|ZP_14506949.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|419998392|ref|ZP_14513180.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|420004281|ref|ZP_14518920.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|420010026|ref|ZP_14524504.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|420016077|ref|ZP_14530372.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|420021547|ref|ZP_14535726.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|420027070|ref|ZP_14541067.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|420032990|ref|ZP_14546800.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|420038462|ref|ZP_14552108.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|420044576|ref|ZP_14558055.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|420050421|ref|ZP_14563720.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|420055809|ref|ZP_14568972.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|420060642|ref|ZP_14573639.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|420067350|ref|ZP_14580143.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|420073941|ref|ZP_14586560.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|420078532|ref|ZP_14590988.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|420084173|ref|ZP_14596439.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|421917949|ref|ZP_16347489.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|428940113|ref|ZP_19013206.1| DNA polymerase I [Klebsiella pneumoniae VA360]
gi|363648183|gb|EHL87366.1| DNA polymerase I [Klebsiella sp. 4_1_44FAA]
gi|397343546|gb|EJJ36691.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|397344023|gb|EJJ37161.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|397348376|gb|EJJ41477.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|397360567|gb|EJJ53243.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|397361962|gb|EJJ54617.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|397366460|gb|EJJ59077.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|397375400|gb|EJJ67691.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|397379946|gb|EJJ72136.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|397386732|gb|EJJ78801.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|397394187|gb|EJJ85923.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|397396264|gb|EJJ87958.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|397404166|gb|EJJ95686.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|397411095|gb|EJK02359.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|397411690|gb|EJK02940.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|397421229|gb|EJK12254.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|397428163|gb|EJK18909.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|397432887|gb|EJK23542.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|397437148|gb|EJK27719.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|397444658|gb|EJK34925.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|397450498|gb|EJK40602.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|410119651|emb|CCM90114.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|426302813|gb|EKV65002.1| DNA polymerase I [Klebsiella pneumoniae VA360]
Length = 930
Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats.
Identities = 121/289 (41%), Positives = 171/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAEL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP L+ LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EELEVQPPAADDLLALFRQYEFKR 286
>gi|425079111|ref|ZP_18482213.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425084758|ref|ZP_18487851.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405589110|gb|EKB62698.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405608761|gb|EKB81700.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
Length = 930
Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats.
Identities = 121/289 (41%), Positives = 171/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAEL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP L+ LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EELEVQPPAADDLLALFRQYEFKR 286
>gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
Length = 930
Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats.
Identities = 121/289 (41%), Positives = 171/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAEL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP L+ LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EELEVQPPAADDLLALFRQYEFKR 286
>gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium]
Length = 647
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 173/283 (61%), Gaps = 8/283 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LVDGS ++RAF+ALP + A+ G I ++KL + + T++A IFD
Sbjct: 4 FVLVDGSYFLFRAFHALPPLTTSTGLQTNAIRGAISAIQKLMRRVQPTHMAVIFDTPEPT 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR++L P YK R MP L QI +H +++A+G P+ + G EADD+IGTLAK+A K
Sbjct: 64 FRHVLSPIYKGDRPSMPEELSQQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRA-EK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+V+IST DKDMAQLV++K+ L ++ +K D +I +FGV P++I+DY +L+GD S
Sbjct: 123 AGHQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDVDGVIEKFGVRPDQIIDYLTLMGDAS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
D + GV +G KTA KLLN+Y ++ I+ N +NIKG +G++L+ + + ++ +I
Sbjct: 183 DGIRGVPGVGAKTAAKLLNEYGTIAGILENVDNIKGKVGQSLKDNVEGIALDHQLASIVI 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL-NKLNFLMH 284
D DL+ + + L L D + L L+ + + N+L L H
Sbjct: 243 DLDLSLSY----DDLKLCEPDVEALRNLYTELEFRNQLQSLDH 281
>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal),
partial [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
3'->5' polymerase; 3'->5' exonuclease (C-terminal)
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 963
Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats.
Identities = 121/281 (43%), Positives = 170/281 (60%), Gaps = 14/281 (4%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
LLLVDGSS +YRAF+A P + N P GA+YG + MLR+L+ Y +A +FDA G+
Sbjct: 40 LLLVDGSSYLYRAFHAFPPLSNSKGEPTGAIYGVLNMLRRLFLQYSPQNMAIVFDAPGET 99
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L+ YKA R MP +L QI +H ++ A+G P+L+++GVEADDVIGTLAK A K
Sbjct: 100 FRSALFSEYKAHRPSMPDDLRAQIAPLHHILSAMGLPLLVVEGVEADDVIGTLAKDA-EK 158
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+V+IST DKDMAQLVS I LIN N+K D + +FGV P+ IVD +L+GD +
Sbjct: 159 AGYEVVISTGDKDMAQLVSPHITLINTMNDKTLDPDGVCEKFGVPPDLIVDLLALMGDSA 218
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPK-------LK 235
DN+PGV IG KTA LL L+ + ++ + I + + R L K +
Sbjct: 219 DNIPGVPGIGEKTAQALLQGMGGLDKLFDHLDKIADLSFRGARTLAEKLIKHQEQAYLSR 278
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
++ TIKTD L + E + P+ ++ L +LF+ Y+
Sbjct: 279 QLATIKTDVSLD---IRCDELQVCPPQIDE-LKKLFSHYEF 315
>gi|399154619|ref|ZP_10754686.1| DNA polymerase I [gamma proteobacterium SCGC AAA007-O20]
Length = 911
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/253 (41%), Positives = 161/253 (63%), Gaps = 4/253 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYAL--PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIF 58
M L+LVDGS+ ++R++++ ++ N FP GA++G I ++ L + Y+ + IF
Sbjct: 1 MAQQLILVDGSAYLFRSYFSTLSQNLSNDKGFPTGAMFGVINAIKHLQRQYQDAKLIMIF 60
Query: 59 DAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLA 118
D+KG NFR+ +YP YKA RK +LI+QI ++Q+++A+G+ + KGVEADDVI TLA
Sbjct: 61 DSKGSNFRHQIYPQYKANRKPADESLIVQIEPLYQIIRAMGFHFICAKGVEADDVIATLA 120
Query: 119 KQAVTKHNLKVIISTNDKDMAQLVSNKIALIN-NNKIHDRTTIISRFGVSPEKIVDYFSL 177
K A K N+K II+++DKD+ QLV I +N ++D + + GV P +I+D +L
Sbjct: 121 KLAHEK-NIKTIIASSDKDLFQLVGGHIKQLNMKGTLYDAEMVKEKMGVRPHQILDLLAL 179
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
GD SDN+PGV +GPKTA+K L Y +E + NAN I G +G+ LR + + L ++
Sbjct: 180 SGDASDNIPGVPSVGPKTAIKWLQLYGDIEGVKANANKIDGKVGEKLRESFDLLNLSYQL 239
Query: 238 LTIKTDCDLTKNI 250
+ +K D DL NI
Sbjct: 240 VKLKFDVDLPLNI 252
>gi|443691221|gb|ELT93135.1| hypothetical protein CAPTEDRAFT_43589, partial [Capitella teleta]
Length = 739
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/260 (43%), Positives = 165/260 (63%), Gaps = 20/260 (7%)
Query: 32 VGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLI 91
GA+ MLR L + Y+ +++ IFDAKGKNFR+ +Y YKATRK MP +L QI I
Sbjct: 1 TGAIRVMTNMLRSLIRQYQGSHVTVIFDAKGKNFRHAMYSEYKATRKPMPDDLRSQIEPI 60
Query: 92 HQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN- 150
HQ+VKA+G+P+L+I+GVEADDVIGTLA+QA T+ + IIST DKD+AQLV+ +++I+
Sbjct: 61 HQIVKALGFPLLMIEGVEADDVIGTLARQA-TEKKIDTIISTGDKDIAQLVTEHVSMIDT 119
Query: 151 -NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENI 209
N+ D + + S+FGV I+DY +L+GD SDN+PG+ +G KTA+ LLN S++ I
Sbjct: 120 MNDVFTDVSGVESKFGVPAHLIIDYLALMGDSSDNIPGMPGVGQKTALALLNGLGSIDEI 179
Query: 210 INNANNIKGVIGKNLRFALNWLPKL----------KKILTIKTDCDLTKNIVSIPESLIL 259
A + V R + N+ K +++ TIKTD L +I ++L +
Sbjct: 180 ---AERLDEVPALGFRGSKNFAEKFAEHKDIVLLSRELATIKTDVALPVSI----DNLEM 232
Query: 260 QPKDEKLLMQLFNKYKLNKL 279
QP D++ L+ LF +Y+ L
Sbjct: 233 QPIDKERLLALFKEYEFRTL 252
>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
Length = 917
Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats.
Identities = 115/286 (40%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA+Y+ P + N GA+YG I MLR L K Y+ T +A IFDAK
Sbjct: 6 ENPLVLVDGSSYLYRAYYSPPHLTNSKGEATGAVYGVINMLRSLLKQYKPTQMAVIFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT++ QA
Sbjct: 66 GKTFRNDMYADYKAQRPPMPDDLRTQIEPLHRIIRAMGLPLVCISGVEADDVIGTISTQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K V+IST DKDMAQLV + + LIN N I + +FGV PE I+D +L G
Sbjct: 126 -SKEGRSVLISTGDKDMAQLVDDNVTLINTMTNTIMGPDEVTEKFGVGPELIIDLLALQG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL- 238
D +DN+PG+ +G KTAV +L ++ I+ + + + + L + + IL
Sbjct: 185 DKADNIPGLPGVGEKTAVAMLTGAGGIDKILAAPEKMPELGFRGSKTMPAKLAEHRDILE 244
Query: 239 ------TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIK D +L ++ + L ++P + L++ F + + +
Sbjct: 245 LSYALATIKLDVELEQDW----QDLTIEPANRDELIKCFAEMEFKR 286
>gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea blandensis MED297]
gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297]
Length = 933
Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats.
Identities = 116/281 (41%), Positives = 164/281 (58%), Gaps = 14/281 (4%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS ++RAF+ALP + N + GA+ G + MLR L K Y + +A +FDAKG
Sbjct: 8 VVLVDGSSYLFRAFHALPPLANSEGLQTGAIKGVVSMLRNLLKMYPDSPVAVVFDAKGPT 67
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FRN +Y YKA R MP L QI IH V+A+G P+L I GVEADDVIGTLA QA T
Sbjct: 68 FRNEMYDQYKANRPPMPEELREQIEPIHDCVRAMGLPLLCIPGVEADDVIGTLAAQA-TS 126
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+IST DKDMAQLVS + LIN N+ D + +++G P+K++DY +L+GD
Sbjct: 127 CGRDCVISTGDKDMAQLVSPHVTLINTMKNETMDVPGVETKYGFGPDKMIDYLALMGDKV 186
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK------- 235
DN+PGV +G KTA+ L+ L++I + + +K + + + L + K
Sbjct: 187 DNIPGVPGVGEKTALALIQGLGGLDDIYSRLDEVKDLTFRGAKTMAAKLEQHKEQAYLSY 246
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
++ TIK D +L I I P D L+ LF +++
Sbjct: 247 ELATIKLDVELETTINDIQPD----PIDNDRLLALFKRFEF 283
>gi|419240115|ref|ZP_13782819.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
[Escherichia coli DEC9C]
gi|378079927|gb|EHW41895.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
[Escherichia coli DEC9C]
Length = 223
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/195 (51%), Positives = 134/195 (68%), Gaps = 3/195 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPK 194
D SDN+PGV +G K
Sbjct: 185 DSSDNIPGVPGVGEK 199
>gi|417719506|ref|ZP_12368388.1| DNA polymerase I domain protein [Shigella flexneri K-227]
gi|333014002|gb|EGK33363.1| DNA polymerase I domain protein [Shigella flexneri K-227]
Length = 223
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/195 (51%), Positives = 134/195 (68%), Gaps = 3/195 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPK 194
D SDN+PGV +G K
Sbjct: 185 DSSDNIPGVPGVGEK 199
>gi|406595017|ref|YP_006746147.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
gi|406372338|gb|AFS35593.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
Length = 930
Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats.
Identities = 114/286 (39%), Positives = 171/286 (59%), Gaps = 20/286 (6%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LVDGSS ++RAF+ LP + N GA+YG + ML+ L K Y T++A IFDAKGK
Sbjct: 9 FILVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVVNMLKSLIKQYNPTHMAVIFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP L QI +H ++KA+G P+++ GVEADDVIGTLAK A T+
Sbjct: 69 FRDDIYKEYKANRPPMPDELRSQIEPLHAIIKAMGLPVIVESGVEADDVIGTLAKHA-TE 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ +IST DKDMAQLV+ + LIN N++ D + ++FG+ PE ++D+ +L GD
Sbjct: 128 KGIDTLISTGDKDMAQLVNEHVTLINTMTNQLMDVEGVNTKFGIPPELVIDFLALKGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK------ 236
DN+PGV +G K+A LLN +++I N + I + + R + + K+++
Sbjct: 188 DNIPGVPGVGDKSAQALLNGIGGIDDIYKNLDKIADL---SFRGSKSMAAKMQEYEEQAR 244
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TI D DL ++ E+L+ D + L LF +Y+ +
Sbjct: 245 LSYTLATISIDLDLDYDV----EALMPCQADNEQLRDLFAEYEFKR 286
>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
Length = 916
Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats.
Identities = 103/214 (48%), Positives = 145/214 (67%), Gaps = 3/214 (1%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDGSS +YRAF+A+P + D P A G I M+R L K Y + + IFDAKGK
Sbjct: 1 MVLVDGSSYLYRAFHAIPPMHTSDGQPTNATRGVISMIRSLIKTYPDSPMVIIFDAKGKT 60
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP +L QI IH++V+A+G P++I+ GVEADDVIGT+AKQ V +
Sbjct: 61 FRDEIYSEYKAHRPPMPDDLRPQIEPIHRVVEAMGLPLVIVDGVEADDVIGTIAKQ-VGE 119
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+V++ST DKDMAQLV++K+ L+N NN + D + +FG+ PE I+DY +L+GD
Sbjct: 120 QGREVVVSTGDKDMAQLVTDKVTLVNTMNNTVMDIQGVKDKFGIPPELIIDYLALMGDKV 179
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
DN+PGV +G KTA+ LL S+++I + I
Sbjct: 180 DNIPGVPGVGEKTALALLQGLGSIKDIYTRLDEI 213
>gi|407685815|ref|YP_006800988.1| DNA polymerase I [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407289195|gb|AFT93507.1| DNA polymerase I [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 930
Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats.
Identities = 114/286 (39%), Positives = 171/286 (59%), Gaps = 20/286 (6%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LVDGSS ++RAF+ LP + N GA+YG + ML+ L K Y T++A IFDAKGK
Sbjct: 9 FILVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVVNMLKSLIKQYNPTHMAVIFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP L QI +H ++KA+G P+++ GVEADDVIGTLAK A T+
Sbjct: 69 FRDDIYKEYKANRPPMPDELRSQIEPLHAIIKAMGLPVIVESGVEADDVIGTLAKHA-TE 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ +IST DKDMAQLV+ + LIN N++ D + ++FG+ PE ++D+ +L GD
Sbjct: 128 KGIDTLISTGDKDMAQLVNEHVTLINTMTNQLMDVEGVNTKFGIPPELVIDFLALKGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK------ 236
DN+PGV +G K+A LLN +++I N + I + + R + + K+++
Sbjct: 188 DNIPGVPGVGDKSAQALLNGIGGIDDIYKNLDKIADL---SFRGSKSMAAKMQEYEEQAR 244
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TI D DL ++ E+L+ D + L LF +Y+ +
Sbjct: 245 LSYTLATISIDLDLDYDV----ETLMPCQADNEQLRDLFAEYEFKR 286
>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
Length = 945
Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats.
Identities = 114/286 (39%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA+YA P + N GA+YG I MLR L Y+ + +A +FDAK
Sbjct: 32 ENPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPSQMAVVFDAK 91
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H +++A+G P++ I GVEADDVIGT+A QA
Sbjct: 92 GKTFRNDMYEEYKAQRPPMPDDLRTQIEPLHNIIRALGLPLVCIPGVEADDVIGTIATQA 151
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K V+IST DKDMAQLV + + LIN N I + +FGV PE I+D +L G
Sbjct: 152 -SKEGRAVLISTGDKDMAQLVDDNVTLINTMTNTIMGPEEVTEKFGVGPELIIDLLALQG 210
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL- 238
D +DN+PG+ +G KTAV +L S+E I+ I + + + L + ++L
Sbjct: 211 DKADNIPGLPGVGEKTAVAMLTGAGSVEQILAAPEKIPALGFRGSKTMPAKLAEHGEMLK 270
Query: 239 ------TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
TIK D ++ ++ + L++ P ++ L++ + + + +
Sbjct: 271 LSYELATIKLDVEMEQDW----KELVIAPANKDDLVKYYGEMEFKR 312
>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
Length = 916
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 166/254 (65%), Gaps = 4/254 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYAL--PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIF 58
M + L+L+DGS+ ++RA+++ ++ N + FP GA++G + ++ L + Y I IF
Sbjct: 1 MSHQLILMDGSAFLFRAYFSTLAQNLTNDEGFPTGAMFGVVNAVKHLQRKYPNAKIIAIF 60
Query: 59 DAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLA 118
DAKGKN R+ +YP YKA RK L++QI ++++++A+G+ L + GVEADDVI TL+
Sbjct: 61 DAKGKNHRHDIYPKYKAHRKPADSELVMQIEPLYEIIRAMGFHFLCVPGVEADDVIATLS 120
Query: 119 KQAVTKHNLKVIISTNDKDMAQLVSNKIALIN-NNKIHDRTTIISRFGVSPEKIVDYFSL 177
+ A ++ +K II++ DKD+ QLVS+ I+ ++ ++D ++ + GV P++I+D+ +L
Sbjct: 121 RCA-DQNKIKTIIASGDKDLYQLVSDNISQLDMRGNLYDHDGVVEKMGVRPDQIMDFLAL 179
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
GD +DN+PGV +GPKTA+K L YN + + N+ IKG +G+ LR + L ++
Sbjct: 180 TGDSADNIPGVPSVGPKTAIKWLQAYNDVAGVKENSAQIKGKVGEKLRDSFGLLDMSHQL 239
Query: 238 LTIKTDCDLTKNIV 251
+ +K D DL NI+
Sbjct: 240 VELKFDVDLPCNIL 253
>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
Length = 932
Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 6 ENPFILVDGSSYLYRAYHAFPPLTNSKGEPTGAMYGVLNMLRSLIIQYKPSHVAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LY YK+ R MP +L QI +H+MV+A+G P+L I GVEADDVIGTLA +A
Sbjct: 66 GKTFRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGTLALKA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I + ++GV PE I+D+ +L+G
Sbjct: 126 ASDGR-NVLISTGDKDMAQLVTPNITLINTMTNVILGPDEVKEKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVI---GKNLRFALNWLPKLKK 236
D SDN+PGV +G KTA+ LL SLE+I + I + K L + K+ K
Sbjct: 185 DSSDNIPGVPGVGEKTALGLLQGLGSLEDIYQQLDKIATLSFRGAKTLGAKMVEHEKVAK 244
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD L K + + ++ +P +KLL ++F +Y+ +
Sbjct: 245 LSYQLATIKTDVALDK---TFDDLVVNEPNLDKLL-EMFTRYEFKR 286
>gi|425083933|ref|ZP_18487030.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405597853|gb|EKB71101.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
Length = 930
Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats.
Identities = 121/289 (41%), Positives = 170/289 (58%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H+MVKA+G P++ + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L G
Sbjct: 126 -ERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFLALKG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAEL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L E L +QP L+ LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELELTC----EELEVQPPAADDLLALFRQYEFKR 286
>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
Length = 949
Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 23 ENPFILVDGSSYLYRAYHAFPPLTNSKGEPTGAMYGVLNMLRSLIIQYKPSHVAVVFDAK 82
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LY YK+ R MP +L QI +H+MV+A+G P+L I GVEADDVIGTLA +A
Sbjct: 83 GKTFRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGTLALKA 142
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I + ++GV PE I+D+ +L+G
Sbjct: 143 ASDGR-NVLISTGDKDMAQLVTPNITLINTMTNVILGPDEVKEKYGVPPELIIDFLALMG 201
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVI---GKNLRFALNWLPKLKK 236
D SDN+PGV +G KTA+ LL SLE+I + I + K L + K+ K
Sbjct: 202 DSSDNIPGVPGVGEKTALGLLQGLGSLEDIYQQLDKIATLSFRGAKTLGAKMVEHEKVAK 261
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD L K + + ++ +P +KLL ++F +Y+ +
Sbjct: 262 LSYQLATIKTDVALDK---TFDDLVVNEPNLDKLL-EMFTRYEFKR 303
>gi|429118496|ref|ZP_19179259.1| DNA polymerase I [Cronobacter sakazakii 680]
gi|426327042|emb|CCK09996.1| DNA polymerase I [Cronobacter sakazakii 680]
Length = 927
Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats.
Identities = 123/289 (42%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLAK+A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAKEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV+ + LIN N + + +++GV PE I+D+ +L+G
Sbjct: 126 AAA-GRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAEL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L +S + QP+ ++LL LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LSHDRLEVQQPQADELL-ALFRQYEFKR 286
>gi|425069608|ref|ZP_18472723.1| DNA polymerase I [Proteus mirabilis WGLW6]
gi|404597034|gb|EKA97541.1| DNA polymerase I [Proteus mirabilis WGLW6]
Length = 949
Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 23 ENPFILVDGSSYLYRAYHAFPPLTNSKGEPTGAMYGVLNMLRSLIIQYKPSHVAVVFDAK 82
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LY YK+ R MP +L QI +H+MV+A+G P+L I GVEADDVIGTLA +A
Sbjct: 83 GKTFRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGTLALKA 142
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I + ++GV PE I+D+ +L+G
Sbjct: 143 ASDGR-NVLISTGDKDMAQLVTPNITLINTMTNVILGPDEVKEKYGVPPELIIDFLALMG 201
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVI---GKNLRFALNWLPKLKK 236
D SDN+PGV +G KTA+ LL SLE+I + I + K L + K+ K
Sbjct: 202 DSSDNIPGVPGVGEKTALGLLQGLGSLEDIYQQLDKIATLSFRGAKTLGAKMVEHEKVAK 261
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD L K + + ++ +P +KLL ++F +Y+ +
Sbjct: 262 LSYQLATIKTDVALDK---TFDDLVVNEPNLDKLL-EMFTRYEFKR 303
>gi|417791948|ref|ZP_12439361.1| DNA polymerase I [Cronobacter sakazakii E899]
gi|449310239|ref|YP_007442595.1| DNA polymerase I [Cronobacter sakazakii SP291]
gi|333953933|gb|EGL71822.1| DNA polymerase I [Cronobacter sakazakii E899]
gi|449100272|gb|AGE88306.1| DNA polymerase I [Cronobacter sakazakii SP291]
Length = 927
Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats.
Identities = 123/289 (42%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLAK+A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAKEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV+ + LIN N + + +++GV PE I+D+ +L+G
Sbjct: 126 AAA-GRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAEL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L +S + QP+ ++LL LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LSHDRLEVQQPQADELL-ALFRQYEFKR 286
>gi|424801716|ref|ZP_18227258.1| DNA polymerase I [Cronobacter sakazakii 696]
gi|423237437|emb|CCK09128.1| DNA polymerase I [Cronobacter sakazakii 696]
Length = 927
Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats.
Identities = 123/289 (42%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLAK+A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAKEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV+ + LIN N + + +++GV PE I+D+ +L+G
Sbjct: 126 AAA-GRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAEL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L +S + QP+ ++LL LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LSHDRLEVQQPQADELL-ALFRQYEFKR 286
>gi|188997399|ref|YP_001931650.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932466|gb|ACD67096.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
Length = 299
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 161/253 (63%), Gaps = 6/253 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+N +LL+DGSS +YRA+YALP + D P GA+YG I+ML K + Y+A FD
Sbjct: 1 MKNKVLLIDGSSYLYRAYYALPPLTAPDGRPTGAVYGFIRMLLKTLSVFNTPYVAVAFDL 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GK R+ + YKATRK+ P L QI ++ ++++ +G IL I G EADD+I TL+K+
Sbjct: 61 PGKTLRHEKFSEYKATRKETPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIATLSKK 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A K + II T DKDM QL+S+ I + N ++ D+ I ++G+ P++ +DY ++I
Sbjct: 121 A-EKEGYEAIIVTPDKDMNQLISDNIKIFNPVKEELLDKEKIKEKYGIHPQQFIDYLTMI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLR-FALNWLPKLKKI 237
GD DN+PG+K IGPKTA LL ++ SLENI+ N + +KG + ++ + L ++K+I
Sbjct: 180 GDAVDNIPGIKGIGPKTAAALLQEFGSLENILENVDKLKGKLKESFKELDKEQLQRMKEI 239
Query: 238 LTIKTDCDLTKNI 250
IK D ++ NI
Sbjct: 240 --IKLDANIEINI 250
>gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894]
gi|389839021|ref|YP_006341105.1| DNA polymerase I [Cronobacter sakazakii ES15]
gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894]
gi|387849497|gb|AFJ97594.1| DNA polymerase I [Cronobacter sakazakii ES15]
Length = 927
Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats.
Identities = 123/289 (42%), Positives = 173/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLAK+A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAKEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV+ + LIN N + + +++GV PE I+D+ +L+G
Sbjct: 126 AAA-GRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAEL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L +S + QP+ ++LL LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LSHDRLEVQQPQADELL-ALFRQYEFKR 286
>gi|425071066|ref|ZP_18474172.1| DNA polymerase I [Proteus mirabilis WGLW4]
gi|404599891|gb|EKB00344.1| DNA polymerase I [Proteus mirabilis WGLW4]
Length = 949
Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 176/286 (61%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ +++A +FDAK
Sbjct: 23 ENPFILVDGSSYLYRAYHAFPPLTNSKGEPTGAMYGVLNMLRSLIIQYKPSHVAVVFDAK 82
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ LY YK+ R MP +L QI +H+MV+A+G P+L I GVEADDVIGTLA +A
Sbjct: 83 GKTFRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGTLALKA 142
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV+ I LIN N I + ++GV PE I+D+ +L+G
Sbjct: 143 ASDGR-NVLISTGDKDMAQLVTPNITLINTMTNVILGPDEVKEKYGVPPELIIDFLALMG 201
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVI---GKNLRFALNWLPKLKK 236
D SDN+PGV +G KTA+ LL SLE+I + I + K L + K+ K
Sbjct: 202 DSSDNIPGVPGVGEKTALGLLQGLGSLEDIYQQLDKIATLSFRGAKTLGAKMVEHEKVAK 261
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TIKTD L K + + ++ +P +KLL ++F +Y+ +
Sbjct: 262 LSYQLATIKTDVALDK---TFDDLVVNEPNLDKLL-EMFTRYEFKR 303
>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
gi|409911106|ref|YP_006889571.1| DNA polymerase I [Geobacter sulfurreducens KN400]
gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
Length = 891
Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats.
Identities = 107/281 (38%), Positives = 168/281 (59%), Gaps = 11/281 (3%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
+TL L+DGSS IYRA++A+ + + FP ALYG +ML K+ K++ +A +FD
Sbjct: 4 DTLFLIDGSSYIYRAYFAIRHLSSPAGFPTNALYGFTQMLLKVIKDHHPGRLAVVFDKGR 63
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
FR +YP YKA R MP +L+ QI I +MV+A P+L ++G EADD+IGT+A++
Sbjct: 64 TTFRTEIYPDYKANRAAMPDDLVPQIGPIKEMVRAFSIPVLELEGYEADDIIGTIARRC- 122
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTT----IISRFGVSPEKIVDYFSLI 178
+ L+ ++ T DKD+ Q+VS++I L++ K DR + ++ RFGV P +++D L
Sbjct: 123 EEQGLEAVVVTGDKDLMQIVSDRIRLLDTMK--DRVSGIPEVVERFGVGPGQVIDILGLA 180
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD SDN+PGV IG KTA KL+ ++ SL+ ++ A +KG G+ LR +++
Sbjct: 181 GDTSDNIPGVPGIGEKTATKLIQEFGSLDALLERAGEVKGKTGERLREFAEQARLSRRLA 240
Query: 239 TIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
TI D L ++ ++ + P D + L +LF +Y L
Sbjct: 241 TIVRDVPLDFDL----DAFAVAPADNRRLAELFKEYGFTTL 277
>gi|407681925|ref|YP_006797099.1| DNA polymerase I [Alteromonas macleodii str. 'English Channel 673']
gi|407243536|gb|AFT72722.1| DNA polymerase I [Alteromonas macleodii str. 'English Channel 673']
Length = 930
Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats.
Identities = 114/286 (39%), Positives = 171/286 (59%), Gaps = 20/286 (6%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LVDGSS ++RAF+ LP + N GA+YG + ML+ L K Y T++A IFDAKGK
Sbjct: 9 FILVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVVNMLKSLIKQYNPTHMAVIFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP L QI +H ++KA+G P+++ GVEADDVIGTLAK A T+
Sbjct: 69 FRDDIYKEYKANRPPMPDELRSQIEPLHAIIKAMGLPVIVESGVEADDVIGTLAKHA-TE 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ +IST DKDMAQLV+ + LIN N++ D + ++FG+ PE ++D+ +L GD
Sbjct: 128 KGIDTLISTGDKDMAQLVNEHVTLINTMTNQLMDVEGVNTKFGIPPELVIDFLALKGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK------ 236
DN+PGV +G K+A LLN +++I N + I + + R + + K+++
Sbjct: 188 DNIPGVPGVGDKSAQALLNGIGGIDDIYKNLDKIADL---SFRGSKSMAAKMQEYEEQAR 244
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TI D DL ++ E+L+ D + L LF +Y+ +
Sbjct: 245 LSYTLATISIDLDLDYDV----EALMPCQADNEQLRDLFAEYEFKR 286
>gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
Length = 906
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 162/253 (64%), Gaps = 4/253 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYAL--PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIF 58
M + L+L+DGS+ ++RA+++ ++ N D FP GA++G I +++L K Y I IF
Sbjct: 1 MSHKLILMDGSAFLFRAYFSTLKQNLTNQDGFPTGAIFGVISAIKRLQKQYPEAKIITIF 60
Query: 59 DAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLA 118
DAKGKNFR+ +YP YKA RK L++QI ++++++A+G + + VEADDVI TL+
Sbjct: 61 DAKGKNFRHDIYPQYKAHRKPADSELVVQIEPLYEIIRAMGLHFMCVPDVEADDVIATLS 120
Query: 119 KQAVTKHNLKVIISTNDKDMAQLVSNKIALIN-NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A ++N+K II++ DKD+ QLVS I+ ++ ++DR +I + GV+PE +D +L
Sbjct: 121 CYA-NQNNIKTIIASGDKDLMQLVSANISQLDMKGTVYDRQGVIEKMGVAPEIFLDLLAL 179
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
GD +DN+PGV +GPKTA+K L YN + I NA IKG +G+ LR L +++
Sbjct: 180 TGDSADNVPGVPSVGPKTAIKWLQTYNDIAGIKENATQIKGKVGEKLRNNFYLLDLSRRL 239
Query: 238 LTIKTDCDLTKNI 250
+ +K D L NI
Sbjct: 240 VMLKFDVALPCNI 252
>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
Length = 921
Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats.
Identities = 101/217 (46%), Positives = 146/217 (67%), Gaps = 3/217 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y ++IA +FDAK
Sbjct: 6 ENPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLMSRYHPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H+++ A+G P++ I+GVEADDVIGT+AK+A
Sbjct: 66 GKTFRNDMYSEYKAQRPPMPDDLRSQIAPLHRIIHALGLPLISIEGVEADDVIGTIAKRA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ +IST DKDMAQLV+ + LIN + I + ++FGV PE I+D+ +L+G
Sbjct: 126 -SAEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVATKFGVGPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
D SDN+PG+ +G KTA+ +LN S+E ++ + ++
Sbjct: 185 DKSDNIPGLPGVGEKTALAMLNGVGSVEKLLADPQSV 221
>gi|225850014|ref|YP_002730248.1| DNA polymerase I [Persephonella marina EX-H1]
gi|225644888|gb|ACO03074.1| DNA polymerase I [Persephonella marina EX-H1]
Length = 296
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 145/219 (66%), Gaps = 3/219 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M L+LVDGSS +YRAFYALP + + P GA+YG I+M+ L K Y+A +FD
Sbjct: 1 MDKKLVLVDGSSYLYRAFYALPPLTSPKGEPTGAIYGFIRMISTLIKELNPEYMAVVFDL 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GK FR+ Y YKATRK+ P L +QI I +++K G IL I G EADD+I T+AK+
Sbjct: 61 PGKTFRHEKYKEYKATRKETPDELKVQIPKIKEIIKLWGIKILEIPGYEADDIIATIAKK 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
AV K +VII T DKDM QL+ K+ ++N +I +R + ++G+ PE+ VDY S+I
Sbjct: 121 AVDK-GFEVIIVTPDKDMMQLIDEKVFILNPVTGEIFNREKVKEKYGIYPEQFVDYLSMI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIK 217
GD DN+ GV+ +GPKTA KLLNQY +L+NI+ + + +K
Sbjct: 180 GDTVDNIIGVRGVGPKTAEKLLNQYGNLKNILEHKDQLK 218
>gi|225848972|ref|YP_002729136.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643758|gb|ACN98808.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
Length = 298
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 144/220 (65%), Gaps = 3/220 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M LLLVDGSS +YRA+YALP + D P GA+YG ++ML KL + YIA +FD
Sbjct: 1 MDKKLLLVDGSSYLYRAYYALPPLSAPDGTPTGAIYGFVRMLLKLISTFNTPYIAVVFDR 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
K R+ +Y YKATRK+ P +L +QI I +++K +G IL I G EADD+I TL+K+
Sbjct: 61 PEKTVRHKIYKEYKATRKETPNDLQVQIPKIKEIIKLLGIKILEIPGYEADDIIATLSKK 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + + +VII T DKDM QL+ I + N +I D +I ++GVSP++ +DY L+
Sbjct: 121 AENR-SFEVIIVTPDKDMNQLIDQHIKIFNPMKEEIVDTQKVIEKYGVSPQQFIDYLVLV 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
GD DN+PG+K +GPKTA LL ++ S++ I+ N + +KG
Sbjct: 180 GDSIDNIPGIKGVGPKTAASLLQEFGSIDRILENKDKLKG 219
>gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999]
Length = 931
Score = 203 bits (517), Expect = 6e-50, Method: Composition-based stats.
Identities = 114/286 (39%), Positives = 167/286 (58%), Gaps = 20/286 (6%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LVDGSS ++RAF+ +P + N A+YG I ML+ L K Y T+IA +FDAKGK
Sbjct: 9 FVLVDGSSYLFRAFHGMPPMSNSQGQATHAIYGVINMLKSLLKTYEPTHIAVVFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +YP YKA R MP L QI +H ++KA+G P+++ VEADDVIGTL K+A T
Sbjct: 69 FRDDIYPEYKANRPPMPDELRSQIAPLHAIIKAMGLPLIVEPNVEADDVIGTLTKRA-TA 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+K ++ST DKDMAQLV + + LIN NN + D ++ +FG+ PE I+D+ +L GD
Sbjct: 128 LGMKSLVSTGDKDMAQLVDDHVTLINTMNNTLMDVPGVVEKFGIGPELIIDFLALKGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK------- 235
DN+PGV +G K+A+ LL + +I NN + I + + R A K++
Sbjct: 188 DNIPGVPGVGDKSALGLLQGIGGINDIYNNLDKIATL---DFRGAKTMAKKMQEHEQSAR 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TI D L + P+ L ++ D L +LF Y+ +
Sbjct: 245 LSYELATIAIDLPLDYS----PDQLSIKDADNNALAELFQTYEFKR 286
>gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola sp. 4H-3-7+YE-5]
gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola sp. 4H-3-7+YE-5]
Length = 928
Score = 203 bits (516), Expect = 7e-50, Method: Composition-based stats.
Identities = 103/216 (47%), Positives = 143/216 (66%), Gaps = 3/216 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N +LVDGSS ++RAF+ +P + N GA+YG I MLR L K + T++A +FDAKG
Sbjct: 15 NPFILVDGSSYLFRAFHGMPPLTNSKGQDTGAVYGVINMLRSLIKQFNPTHMAVVFDAKG 74
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L QI +H++++A+G PI++ GVEADDVIGTLA QA
Sbjct: 75 KTFRDEIYTEYKANRPSMPEELRSQIAPLHKIIQAMGLPIIVESGVEADDVIGTLADQA- 133
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + +IST DKDMAQLV+ + LIN NN+I D ++ +FG+ PE ++D+ +L GD
Sbjct: 134 SKLGIPTLISTGDKDMAQLVNEHVTLINTMNNQIMDPQGVVEKFGIPPELVIDFLALKGD 193
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
DN+PGV +G K+AV LL S+ I N + I
Sbjct: 194 KVDNIPGVPGVGDKSAVGLLQGIGSINEIYQNLDKI 229
>gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
Length = 909
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 167/254 (65%), Gaps = 4/254 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYAL--PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIF 58
M + L+L+DGS+ ++RA+++ ++ N + FP GA++G I ++ L + Y+ I IF
Sbjct: 1 MPHKLILMDGSAFLFRAYFSTLKQNLTNQNGFPTGAMFGVINAMKSLQRKYQEARIIIIF 60
Query: 59 DAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLA 118
DA+GKNFR+ +YP YKA RK + L++QI +++M++A+G + + VEADDVI TL+
Sbjct: 61 DARGKNFRHNIYPQYKANRKPIDGGLVVQIEPLYEMIQAMGIHFICVSKVEADDVIATLS 120
Query: 119 KQAVTKHNLKVIISTNDKDMAQLVSNKIALINNNKI-HDRTTIISRFGVSPEKIVDYFSL 177
A ++N+K II++ DKD+ QLV I+ +N + HDR ++I + GV+PEKI+D+ +L
Sbjct: 121 CCA-NQNNIKTIIASGDKDLMQLVGTNISQLNMKGVLHDRQSVIEKIGVAPEKILDFLAL 179
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 237
GD +DN+PGV +GPKTA+K L Y+ + I NA IKG +G+ LR + L ++
Sbjct: 180 TGDSADNIPGVPSVGPKTAIKWLQIYSDILGIKENAMQIKGKVGEKLRDNFDLLDLSYQL 239
Query: 238 LTIKTDCDLTKNIV 251
+ +K D L NI+
Sbjct: 240 VKLKFDVVLPCNIL 253
>gi|410647438|ref|ZP_11357870.1| DNA polymerase I [Glaciecola agarilytica NO2]
gi|410133028|dbj|GAC06269.1| DNA polymerase I [Glaciecola agarilytica NO2]
Length = 928
Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats.
Identities = 103/216 (47%), Positives = 143/216 (66%), Gaps = 3/216 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N +LVDGSS ++RAF+ +P + N GA+YG I MLR L K + T++A +FDAKG
Sbjct: 15 NPFILVDGSSYLFRAFHGMPPLTNSKGQDTGAVYGVINMLRSLIKQFNPTHMAVVFDAKG 74
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L QI +H++++A+G PI++ GVEADDVIGTLA QA
Sbjct: 75 KTFRDEIYTEYKANRPSMPEELRSQIAPLHKIIQAMGLPIIVESGVEADDVIGTLADQA- 133
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K + +IST DKDMAQLV+ + LIN NN+I D ++ +FG+ PE ++D+ +L GD
Sbjct: 134 SKLGIPTLISTGDKDMAQLVNEHVTLINTMNNQIMDPQGVVEKFGIPPELVIDFLALKGD 193
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
DN+PGV +G K+AV LL S+ I N + I
Sbjct: 194 KVDNIPGVPGVGDKSAVGLLQGIGSINEIYQNLDKI 229
>gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032]
gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032]
Length = 966
Score = 202 bits (515), Expect = 9e-50, Method: Composition-based stats.
Identities = 123/289 (42%), Positives = 172/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 45 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 104
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLAK+A
Sbjct: 105 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAKEA 164
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV+ + LIN N + + +++GV PE I+D+ +L+G
Sbjct: 165 AAA-GRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFLALMG 223
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N I + + R A KL+
Sbjct: 224 DSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAEL---SFRGAKTMAAKLEQNKD 280
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L +S + QP ++LL LF +Y+ +
Sbjct: 281 VAYLSYQLATIKTDVELE---LSHDRLEVQQPLADELL-ALFRQYEFKR 325
>gi|395651405|ref|ZP_10439255.1| DNA polymerase I [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 931
Score = 202 bits (515), Expect = 9e-50, Method: Composition-based stats.
Identities = 120/281 (42%), Positives = 166/281 (59%), Gaps = 24/281 (8%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ LQI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDEMYAEYKAHRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
N V+IST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-NRPVVISTGDKDMAQLVDGHITLVNTMTGSSMDVEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL--------NQYNSLENI----INNANNIKGVIGKNLRFA 227
D SDN+PGV IGPKTA LL Y L+ + I A + + ++ A
Sbjct: 182 DSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHREMA 241
Query: 228 -LNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLL 267
L++ ++ TIK D L V + + +++P EKLL
Sbjct: 242 FLSY-----QLATIKVDVPLD---VGLDDLHLIEPDREKLL 274
>gi|119946792|ref|YP_944472.1| multifunctional 5'-3' exonuclease/3'-5' polymerase/3'-5'
exonuclease [Psychromonas ingrahamii 37]
gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
3'->5' exonuclease [Psychromonas ingrahamii 37]
Length = 938
Score = 202 bits (515), Expect = 1e-49, Method: Composition-based stats.
Identities = 111/286 (38%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +LVDGSS +YRAF++ P + N GA+YG + ML+ L K + +++ +FDAK
Sbjct: 6 ENPFILVDGSSYLYRAFFSPPHLTNSAGEATGAVYGVVNMLQSLLKQFNPSHVVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YK+ R MP +L +QI +H ++KA+G PIL I GVEADDVIGTL++QA
Sbjct: 66 GKTFRDDMYTEYKSNRPSMPDDLRIQIEPLHAVIKAMGLPILTIPGVEADDVIGTLSRQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ + +IST DKDMAQLV LIN N + D + +FG+ PE I+DY L+G
Sbjct: 126 -SAQGITTLISTGDKDMAQLVDTNTLLINTMTNTVLDVEGVNEKFGIPPELIIDYLGLMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-------IGKNLRFALNWLP 232
D DN+PGV +G KTA+ +L S+++I N + + + I K ++
Sbjct: 185 DKVDNIPGVPGVGEKTALAMLQGLGSMDDIYLNLDKLAALGFRGSKTIAKKMQDNEEMAR 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L+++ E + +D L++LF + + +
Sbjct: 245 LSYQLATIKTDVELSESY----EDFKPKAQDTDALIKLFGQLEFRR 286
>gi|395495864|ref|ZP_10427443.1| DNA polymerase I [Pseudomonas sp. PAMC 25886]
Length = 930
Score = 202 bits (515), Expect = 1e-49, Method: Composition-based stats.
Identities = 119/279 (42%), Positives = 166/279 (59%), Gaps = 20/279 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPNSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ LY YKA R MP ++ +QI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDELYAEYKANRASMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-DRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYN-SLENIINNANNIKGVIGKNLRFALNWLPKLK--- 235
D SDN+PGV IGPKTA LL N L+ + + + + +R A + KL+
Sbjct: 182 DSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTL---PIRGAKTLVAKLEEHK 238
Query: 236 -------KILTIKTDCDLTKNIVSIPESLILQPKDEKLL 267
++ TIK D L V + + +++P EKLL
Sbjct: 239 ESAFLSYQLATIKIDVPLD---VGLDDLHLIEPDREKLL 274
>gi|440738561|ref|ZP_20918089.1| DNA polymerase I [Pseudomonas fluorescens BRIP34879]
gi|440380921|gb|ELQ17473.1| DNA polymerase I [Pseudomonas fluorescens BRIP34879]
Length = 927
Score = 202 bits (515), Expect = 1e-49, Method: Composition-based stats.
Identities = 117/276 (42%), Positives = 164/276 (59%), Gaps = 14/276 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L + Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRRQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ LQI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDDMYADYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAASR-PVVISTGDKDMAQLVDGHITLVNTMTGSAMDVEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYN-SLENIINNANNIKGVI---GKNLRFALNWLPKLK 235
D SDN+PGV IGPKTA LL N L+ + + + + K LR L ++
Sbjct: 182 DSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPSLPIRGAKTLRAKLEEHREMA 241
Query: 236 ----KILTIKTDCDLTKNIVSIPESLILQPKDEKLL 267
++ TIK D L + + + +++P EKLL
Sbjct: 242 FLSYRLATIKIDVPLD---IGLDDLHLIEPDREKLL 274
>gi|429102476|ref|ZP_19164450.1| DNA polymerase I [Cronobacter turicensis 564]
gi|426289125|emb|CCJ90563.1| DNA polymerase I [Cronobacter turicensis 564]
Length = 927
Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats.
Identities = 123/289 (42%), Positives = 172/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLAK+A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAKEA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV+ + LIN N + + +++GV PE I+D+ +L+G
Sbjct: 126 AAA-GRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N I + + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAEL---SFRGAKTMAAKLEQNKD 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L +S + QP ++LL LF +Y+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LSHDRLEVQQPLADELL-ALFRQYEFKR 286
>gi|374314445|ref|YP_005060874.1| 5'-3' exonuclease [Serratia symbiotica str. 'Cinara cedri']
gi|363988671|gb|AEW44862.1| 5'-3' exonuclease domain of DNA polymerase I [Serratia symbiotica
str. 'Cinara cedri']
Length = 922
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 175/283 (61%), Gaps = 12/283 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+ +L+LVDGSS +YRA+YALP + N P+GA+YG + MLR+L + Y+ ++IA +FDAK
Sbjct: 6 EKSLILVDGSSYLYRAYYALPSLHNSAGEPIGAIYGVLNMLRRLLQAYKPSHIAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK R MP +L +QI ++Q++ A+G P+L+I GVEADDVIGTLA A
Sbjct: 66 GKTFRDDLFVKYKEHRPPMPDDLRVQIEPLYQIITAMGLPLLVIPGVEADDVIGTLAIDA 125
Query: 122 -VTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHD--RTTIISRFGVSPEKIVDYFSLI 178
++ H+ V+I T DKDM QLV++KI +IN + + ++GV P+ I+D +L+
Sbjct: 126 EISNHS--VLIMTGDKDMTQLVTSKITIINTINNIEFGPQEVFKKYGVPPKLIIDLLALV 183
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKIL 238
GD SDN+PGV IG KTA LL + L+ + NN +NI + + + L + KKI
Sbjct: 184 GDTSDNIPGVPGIGKKTAQTLLMTFGGLDVLYNNLDNITKLSFRGAKTTAEKLKQYKKIA 243
Query: 239 TI-----KTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
+ K D+T N+ L L D L QLF +++
Sbjct: 244 YLSYKLAKIKTDVTLNVTY--ADLKLFTPDINTLHQLFVRFEF 284
>gi|445421530|ref|ZP_21435932.1| DNA-directed DNA polymerase [Acinetobacter sp. WC-743]
gi|444757498|gb|ELW82020.1| DNA-directed DNA polymerase [Acinetobacter sp. WC-743]
Length = 920
Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats.
Identities = 113/283 (39%), Positives = 173/283 (61%), Gaps = 8/283 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LVDGS ++RAF+ALP + A+ G I ++KL + + T++A IFD
Sbjct: 4 FVLVDGSYFLFRAFHALPPLTTSTGLQTNAIRGAISAIQKLMRRVQPTHMAVIFDTPEPT 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L P YK R MP L QI +H +++A+G P+ + G EADD+IGTLAK+A K
Sbjct: 64 FRHQLSPIYKGDRPSMPEELSQQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRA-EK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+V+IST DKDMAQLV++K+ L ++ +K D +I +FGV P++I+DY +L+GD S
Sbjct: 123 EGYQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDVDGVIEKFGVRPDQIIDYLTLMGDAS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
D + GV +G KTA KLLN+Y S++ I+ N +NIKG +G++L+ ++ + ++ +I
Sbjct: 183 DGIRGVPGVGAKTAAKLLNEYGSIDGILKNVDNIKGKVGQSLKDNVDGITLDHQLASIII 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL-NKLNFLMH 284
D DL + E L L D + L L+ + + N+L L H
Sbjct: 243 DLDLNISY----EDLKLCDPDVEALRNLYTELEFRNQLQSLDH 281
>gi|403054037|ref|ZP_10908521.1| DNA polymerase I [Acinetobacter bereziniae LMG 1003]
Length = 920
Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats.
Identities = 113/283 (39%), Positives = 173/283 (61%), Gaps = 8/283 (2%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LVDGS ++RAF+ALP + A+ G I ++KL + + T++A IFD
Sbjct: 4 FVLVDGSYFLFRAFHALPPLTTSTGLQTNAIRGAISAIQKLMRRVQPTHMAVIFDTPEPT 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L P YK R MP L QI +H +++A+G P+ + G EADD+IGTLAK+A K
Sbjct: 64 FRHQLSPIYKGDRPSMPEELSQQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRA-EK 122
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+V+IST DKDMAQLV++K+ L ++ +K D +I +FGV P++I+DY +L+GD S
Sbjct: 123 EGYQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDVDGVIEKFGVRPDQIIDYLTLMGDAS 182
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKT 242
D + GV +G KTA KLLN+Y S++ I+ N +NIKG +G++L+ ++ + ++ +I
Sbjct: 183 DGIRGVPGVGAKTAAKLLNEYGSIDGILKNVDNIKGKVGQSLKDNVDGITLDHQLASIII 242
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL-NKLNFLMH 284
D DL + E L L D + L L+ + + N+L L H
Sbjct: 243 DLDLNISY----EDLKLCDPDVEALRNLYTELEFRNQLQSLDH 281
>gi|421141572|ref|ZP_15601554.1| DNA polymerase I [Pseudomonas fluorescens BBc6R8]
gi|404507239|gb|EKA21227.1| DNA polymerase I [Pseudomonas fluorescens BBc6R8]
Length = 930
Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats.
Identities = 119/279 (42%), Positives = 166/279 (59%), Gaps = 20/279 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPNSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ LY YKA R MP ++ +QI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDELYAEYKANRASMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-DRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYN-SLENIINNANNIKGVIGKNLRFALNWLPKLK--- 235
D SDN+PGV IGPKTA LL N L+ + + + + +R A + KL+
Sbjct: 182 DSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTL---PIRGAKTLVAKLEEHK 238
Query: 236 -------KILTIKTDCDLTKNIVSIPESLILQPKDEKLL 267
++ TIK D L V + + +++P EKLL
Sbjct: 239 ASAFLSYELATIKIDVPLD---VGLDDLHLIEPDREKLL 274
>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
Length = 930
Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats.
Identities = 113/286 (39%), Positives = 170/286 (59%), Gaps = 20/286 (6%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LVDGSS ++RAF+ LP + N GA+YG + ML+ L K Y T++A IFDAKGK
Sbjct: 9 FILVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVVNMLKSLIKQYNPTHMAVIFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP L QI +H ++KA+G P+++ GVEADDVIGTLAK A T+
Sbjct: 69 FRDDIYKEYKANRPPMPEELRSQIEPLHTIIKAMGLPVIVESGVEADDVIGTLAKHA-TE 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ +IST DKDMAQLV+ + LIN N++ D + ++FG+ PE ++D+ +L GD
Sbjct: 128 KGIDTLISTGDKDMAQLVNKHVTLINTMTNQLMDVEGVNTKFGIPPELVIDFLALKGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK------ 236
DN+PGV +G K+A LLN ++ I N + I + + R + + K+++
Sbjct: 188 DNIPGVPGVGDKSAQALLNGIGGIDEIYKNLDKIADL---SFRGSKSMAAKMEEYEEQAR 244
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TI D +L ++ E+L+ D + L LF +Y+ +
Sbjct: 245 LSYTLATISIDLELDYDV----ETLMPCQADNEQLRDLFAEYEFKR 286
>gi|388256406|ref|ZP_10133587.1| DNA polymerase I [Cellvibrio sp. BR]
gi|387940106|gb|EIK46656.1| DNA polymerase I [Cellvibrio sp. BR]
Length = 921
Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats.
Identities = 114/283 (40%), Positives = 171/283 (60%), Gaps = 20/283 (7%)
Query: 6 LLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNF 65
+LVDGSS +YRA++ALP + N P GA+ G + M+R+L K+Y + IA +FDAKGK F
Sbjct: 1 MLVDGSSYLYRAYHALPPLTNSKGQPTGAVKGVVNMMRRLVKDYPRSPIAVVFDAKGKTF 60
Query: 66 RNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKH 125
R+ ++ YKA R MP +L Q+ IH +V+A+G P+L+I+GVEADDVIGTLA+QA T+
Sbjct: 61 RDDMFAEYKANRPPMPDDLRPQVQPIHDIVQAMGLPLLVIEGVEADDVIGTLARQA-TEQ 119
Query: 126 NLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSD 183
V+IST DKDMAQLV+ + L+N + D + +++G PE ++DY +L+GD D
Sbjct: 120 KRDVVISTGDKDMAQLVNEHVTLVNTMTETVLDIPGVNAKYGFGPELMIDYLALMGDKVD 179
Query: 184 NLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL--------- 234
N+PGV +G KTA L+ L+ I + ++ + + R A KL
Sbjct: 180 NIPGVPGVGEKTAQGLIQGMGGLDAIYADLEKVRTL---SFRGAKTMPEKLIEHRDMAYL 236
Query: 235 -KKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
++ TIK D +L + P+S+ L D + L +LF + +
Sbjct: 237 SYRLATIKVDVELPLS----PKSIHLSAPDNQRLRELFEELEF 275
>gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
Length = 881
Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats.
Identities = 106/242 (43%), Positives = 160/242 (66%), Gaps = 11/242 (4%)
Query: 41 MLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGW 100
ML KLY +++ Y +FDAKGK FR+ LYP+YKA R MP +L +QI +H++++A+G+
Sbjct: 1 MLAKLYDDHQPAYFGVVFDAKGKTFRHDLYPAYKAHRPPMPDDLRVQIEPLHRLIEALGF 60
Query: 101 PILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSN-KIALINN--NKIHDR 157
P++I GVEADDVIGTLA QA+++H +V+IS+ DKDMAQL+++ I L++ N +
Sbjct: 61 PLIIEPGVEADDVIGTLAMQALSEH-YQVVISSGDKDMAQLLTHADITLLDTMKNAVTTT 119
Query: 158 TTIISRFGVS---PEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNAN 214
I RF V ++++D+ +L+GD +DN+PGV K+GPKTA K L +Y +++N+I++A+
Sbjct: 120 ANIAERFKVDALRADQVIDFLALVGDSADNIPGVAKVGPKTAAKWLAEYQTIDNLIDHAS 179
Query: 215 NIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 274
I G IG NLR ++ L + + TI T DL I L LQP+ L L + Y
Sbjct: 180 KIPGKIGDNLRAGIDTLRLSQTLATINTTLDLNTRIA----DLALQPRQPDKLAALCDTY 235
Query: 275 KL 276
+L
Sbjct: 236 EL 237
>gi|410859668|ref|YP_006974902.1| DNA polymerase I [Alteromonas macleodii AltDE1]
gi|410816930|gb|AFV83547.1| DNA polymerase I [Alteromonas macleodii AltDE1]
Length = 930
Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats.
Identities = 113/286 (39%), Positives = 171/286 (59%), Gaps = 20/286 (6%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LVDGSS ++RAF+ LP + N GA+YG + ML+ L K Y T++A IFDAKGK
Sbjct: 9 FILVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVVNMLKSLIKQYNPTHMAVIFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP L QI +H ++KA+G P+++ GVEADDVIGTLAK A T+
Sbjct: 69 FRDDIYKEYKANRPPMPEELRSQIAPLHTIIKAMGLPVIVESGVEADDVIGTLAKHA-TE 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ +IST DKDMAQLV+ + LIN N++ D + ++FG+ PE ++D+ +L GD
Sbjct: 128 KGIDTLISTGDKDMAQLVNKHVTLINTMTNQLMDVEGVNTKFGIPPELVIDFLALKGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK------ 236
DN+PGV +G K+A LLN +++I N + I + + R + + K+++
Sbjct: 188 DNIPGVPGVGDKSAQALLNGIGGIDDIYKNLDKIADL---SFRGSKSMAAKMEEYEEQAR 244
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TI D +L ++ E+L+ D + L LF +Y+ +
Sbjct: 245 LSYTLATISIDLELDYDV----ETLMPCQADNEQLRDLFAEYEFKR 286
>gi|372267076|ref|ZP_09503124.1| DNA polymerase I [Alteromonas sp. S89]
Length = 913
Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats.
Identities = 117/279 (41%), Positives = 164/279 (58%), Gaps = 20/279 (7%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+LVDGSS +YRAF+ALP + P GA+ G I MLRK K + + + +FDAKGK
Sbjct: 11 LILVDGSSYLYRAFHALPPLATSTGQPTGAVRGVISMLRKHLKEHPDSPVVVVFDAKGKT 70
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ L+ YK+ R MP +L QI IH ++ A+G P L+I GVEADDVIGTLA Q +
Sbjct: 71 FRDELFEEYKSHRPPMPDDLRAQIQPIHDIIDAMGLPRLVIDGVEADDVIGTLALQG-AE 129
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ VIIST DKDMAQLV + L+N +N + D + ++FGV PE I+D+ +L+GD
Sbjct: 130 QGMDVIISTGDKDMAQLVRPGVTLVNTMSNTVMDVEGVKAKFGVGPELIIDFLALMGDKV 189
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK------ 236
DN+PGV +G KTA+ LL SL++I N+ G+ R + K+++
Sbjct: 190 DNIPGVPGVGEKTALALLQGLGSLKDIY---ANLDGIAPLGFRGSKTLAKKMEEHKDAAD 246
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF 271
+ TIKTD ++ P++L D L +LF
Sbjct: 247 MSYVLATIKTDVEMDYQ----PQTLTNSEPDSDKLRELF 281
>gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6]
gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6]
Length = 931
Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats.
Identities = 102/201 (50%), Positives = 134/201 (66%), Gaps = 3/201 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ LQI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDDMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-DRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVDGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D SDN+PGV IGPKTA LL
Sbjct: 182 DSSDNIPGVPGIGPKTASGLL 202
>gi|408479978|ref|ZP_11186197.1| DNA polymerase I [Pseudomonas sp. R81]
Length = 925
Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats.
Identities = 102/201 (50%), Positives = 134/201 (66%), Gaps = 3/201 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPNSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ LQI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDEMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-DRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDIEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D SDN+PGV IGPKTA LL
Sbjct: 182 DSSDNIPGVPGIGPKTASGLL 202
>gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
Length = 891
Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats.
Identities = 105/234 (44%), Positives = 153/234 (65%), Gaps = 6/234 (2%)
Query: 47 KNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIK 106
K+ Y+AC+ D KGK FR+ +YP YKA R MP +L +QI LI + V+ G P L I
Sbjct: 2 KDVPTDYVACVVDPKGKTFRSDIYPDYKANRPPMPEDLSVQIPLIFEGVQKEGIPFLQIP 61
Query: 107 GVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN----NNKIHDRTTIIS 162
G+EADD IGTL K+AV + V+I+T DKD AQLV++ + L+N +N + +
Sbjct: 62 GIEADDTIGTLTKKAVAE-GFNVVIATGDKDFAQLVNDNVLLVNTMGKDNSWLNSEGVEK 120
Query: 163 RFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGK 222
+FGV PEKI+D+ +L+GD DN+PGV K G KTA K + ++ S++ +I NA +KG IG+
Sbjct: 121 KFGVPPEKIIDFLALMGDKIDNVPGVPKCGEKTAAKWITEFGSVDGVIENAEKVKGKIGE 180
Query: 223 NLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
NLR AL +LP ++++TIKTD DL+ + S+ ESL L+ + L+ +NK +
Sbjct: 181 NLRSALGFLPIARQLVTIKTDADLSAEVPSL-ESLKLKTPNRTELLDYYNKLEF 233
>gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
Length = 907
Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats.
Identities = 118/287 (41%), Positives = 170/287 (59%), Gaps = 20/287 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+ L+LVDGSS +YRA++ALP + N GA+ G I MLR+L K+Y + IA +FDAK
Sbjct: 4 KTPLILVDGSSYLYRAYHALPPLTNSKGVATGAVKGVINMLRRLQKDYPDSTIAVVFDAK 63
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L Q+ IH +V+ +G P+L GVEADDVIGTLA+QA
Sbjct: 64 GKTFRDDIYKEYKANRPPMPDDLREQVQPIHDIVRGMGLPLLCEPGVEADDVIGTLARQA 123
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
++ + VI+ST DKDMAQLV+ ++ L+N N+ + D ++ +FG+ PE I+D +L+G
Sbjct: 124 -SEADCHVIVSTGDKDMAQLVNERVTLVNTMNDTVMDPQGVVDKFGIPPELIIDLLALMG 182
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK--- 236
D DN+PGV +G KTA+ LL L I + + I+G+ R A KL+K
Sbjct: 183 DKVDNIPGVPGVGEKTALGLLQGLGGLNQIYASLDQIEGL---PFRGAKTMAAKLEKERD 239
Query: 237 -------ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKL 276
+ TI TD +L + + P D L+ LF + +
Sbjct: 240 NAYLSYTLATIATDLELPLVYADLENA----PPDNVALLDLFKELEF 282
>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
Length = 936
Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats.
Identities = 102/217 (47%), Positives = 143/217 (65%), Gaps = 3/217 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N +LVDGSS +YRAF++ P + N GA+YG + ML+ L + + ++I +FDAK
Sbjct: 6 ENPFVLVDGSSYLYRAFFSPPHLTNSAGDATGAVYGVVNMLKSLMQQFSPSHIVVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ +Y YKA R MP +L +QI +H ++KA+G PILI+ GVEADDVIGTL+KQA
Sbjct: 66 GKTFRDDMYSQYKANRPSMPDDLRIQIEPLHAVIKAMGLPILIVPGVEADDVIGTLSKQA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K +K +IST DKDMAQLV LIN N + D + +FGV E I+DY +L+G
Sbjct: 126 SAK-GIKTLISTGDKDMAQLVDEHTLLINTMTNSVLDIDGVTEKFGVPAELIIDYLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
D +DN+PGV +G KTA+ +L S++ I N + +
Sbjct: 185 DTADNIPGVPGVGSKTALAMLQGIGSMDLIYENLDKL 221
>gi|395800154|ref|ZP_10479433.1| DNA polymerase I [Pseudomonas sp. Ag1]
gi|395335996|gb|EJF67858.1| DNA polymerase I [Pseudomonas sp. Ag1]
Length = 930
Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats.
Identities = 118/279 (42%), Positives = 166/279 (59%), Gaps = 20/279 (7%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L + Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRRQYPNSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ LY YKA R MP ++ +QI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDELYAEYKANRASMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-DRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYN-SLENIINNANNIKGVIGKNLRFALNWLPKLK--- 235
D SDN+PGV IGPKTA LL N L+ + + + + +R A + KL+
Sbjct: 182 DSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTL---PIRGAKTLVAKLEEHK 238
Query: 236 -------KILTIKTDCDLTKNIVSIPESLILQPKDEKLL 267
++ TIK D L V + + +++P EKLL
Sbjct: 239 ASAFLSYELATIKIDVPLD---VGLDDLHLIEPDREKLL 274
>gi|429088783|ref|ZP_19151515.1| DNA polymerase I [Cronobacter universalis NCTC 9529]
gi|426508586|emb|CCK16627.1| DNA polymerase I [Cronobacter universalis NCTC 9529]
Length = 964
Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats.
Identities = 123/289 (42%), Positives = 172/289 (59%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 43 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAK 102
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLAK+A
Sbjct: 103 GKTFRDELFEHYKSHRPPMPDDLRGQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAKEA 162
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV+ + LIN N + + +++GV PE I+D+ +L+G
Sbjct: 163 AAA-GRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVRAKYGVPPELIIDFLALMG 221
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + N I + + R A KL+
Sbjct: 222 DSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAEL---SFRGAKTMAAKLEQNKE 278
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L +S + QP ++LL LF +Y+ +
Sbjct: 279 VAYLSYQLATIKTDVELE---LSHDRLEVQQPLADELL-ALFRQYEFKR 323
>gi|407698276|ref|YP_006823063.1| DNA polymerase I [Alteromonas macleodii str. 'Black Sea 11']
gi|407247423|gb|AFT76608.1| DNA polymerase I [Alteromonas macleodii str. 'Black Sea 11']
Length = 929
Score = 201 bits (512), Expect = 3e-49, Method: Composition-based stats.
Identities = 113/286 (39%), Positives = 170/286 (59%), Gaps = 20/286 (6%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LVDGSS ++RAF+ LP + N GA+YG + ML+ L K Y T++A IFDAKGK
Sbjct: 9 FILVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVVNMLKSLIKQYNPTHMAVIFDAKGKT 68
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ +Y YKA R MP L QI +H ++KA+G P+++ GVEADDVIGTLAK A T+
Sbjct: 69 FRDDIYKEYKANRPPMPDELRSQIEPLHAIIKAMGLPVIVEPGVEADDVIGTLAKHA-TE 127
Query: 125 HNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ +IST DKDMAQLV+ + LIN N++ D + ++FG+ PE ++D+ +L GD
Sbjct: 128 KGIDTLISTGDKDMAQLVNEHVTLINTMTNQLMDVEGVNTKFGIPPELVIDFLALKGDKV 187
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK------ 236
DN+PGV +G K+A LLN +++I N + I + + R + + K+++
Sbjct: 188 DNIPGVPGVGDKSAQALLNGIGGIDDIYKNLDKIAEL---SFRGSKSMAAKMQEYEEQAR 244
Query: 237 ----ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
+ TI D DL ++ E L+ D + L LF +++ +
Sbjct: 245 LSHTLATISIDLDLDYDV----EELMPCQADNEQLRDLFAEFEFKR 286
>gi|388466601|ref|ZP_10140811.1| DNA-directed DNA polymerase [Pseudomonas synxantha BG33R]
gi|388010181|gb|EIK71368.1| DNA-directed DNA polymerase [Pseudomonas synxantha BG33R]
Length = 931
Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats.
Identities = 102/201 (50%), Positives = 133/201 (66%), Gaps = 3/201 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ LQI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDEMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAASR-PVVISTGDKDMAQLVDGHITLVNTMTGSSMDVEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D SDN+PGV IGPKTA LL
Sbjct: 182 DSSDNIPGVPGIGPKTASGLL 202
>gi|339477901|ref|YP_004706721.1| putative DNA polymerase I [Candidatus Moranella endobia PCIT]
gi|338172452|gb|AEI74853.1| putative DNA polymerase I [Candidatus Moranella endobia PCIT]
Length = 939
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 170/288 (59%), Gaps = 18/288 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+NTL+LVDGS +YRA++ALP + NI P GA+YG + ML+ L Y+ +++A +FD K
Sbjct: 7 KNTLILVDGSFYLYRAYHALPSLNNIAGEPTGAMYGVLNMLKSLLIQYQPSHVAVVFDTK 66
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
K FR+ L+ YK R MP NL QI ++ MVKA+G PIL I G+EADDVIGTLA A
Sbjct: 67 DKTFRDQLFEHYKLHRPIMPENLRKQITPLYDMVKAMGLPILSISGIEADDVIGTLAITA 126
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V I T DKD+AQLVS+KI + N N I + ++FGV P I+DY +L+G
Sbjct: 127 A-RDGCDVRIITGDKDIAQLVSSKITMTNTLANTIIGPEEVKTKFGVPPALIIDYLALMG 185
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVI---GKNLRFALNWLPKLK- 235
D +DN+PGV IG KTA LL++ LE I ++I + KN+ L L
Sbjct: 186 DRADNIPGVMGIGKKTAQILLHEIGGLETIYQQLDSISILCCRGAKNIATKLEQQRDLAF 245
Query: 236 ---KILTIKTDC--DLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD DL+ +++ E KLL LF +Y+ +
Sbjct: 246 LSYQLATIKTDVVLDLSYYQLTVEEP------QYKLLRLLFQRYEFKR 287
>gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
Length = 929
Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats.
Identities = 102/201 (50%), Positives = 134/201 (66%), Gaps = 3/201 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 7 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAK 66
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ LQI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 67 GGTFRDDMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 126
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 127 AAA-DRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDIEGVKEKFGVAPEQIIDYLALMG 185
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D SDN+PGV IGPKTA LL
Sbjct: 186 DSSDNIPGVPGIGPKTASGLL 206
>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
Length = 918
Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats.
Identities = 115/286 (40%), Positives = 167/286 (58%), Gaps = 16/286 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG I MLR L Y+ + +A +FDAKG
Sbjct: 7 NPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPSQMAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +Y YKA R MP +L QI +H+++KA+G P++ I GVEADDVIGT+A QA
Sbjct: 67 KTFRNDMYSEYKAQRPPMPDDLRTQIEPLHRIIKALGLPLVSISGVEADDVIGTIATQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K V+IST DKDMAQLV + LIN N I + +FGV PE I+D +L GD
Sbjct: 126 SKEGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPAEVTEKFGVGPELIIDLLALQGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI--------KGVIGKNLRFALNWLP 232
+DN+PG+ +G KTA+ +L ++ I+ + K + K + A + L
Sbjct: 186 KADNIPGLPGVGEKTALAMLTGVGGVDKILAAPEKMPELGFRGSKTMPAKIIEHA-DMLK 244
Query: 233 KLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIK D +L ++ L + P D+ L++ + + + +
Sbjct: 245 LSYELATIKLDVELEQDW----HQLSITPADKDELIKCYGEMEFKR 286
>gi|398989628|ref|ZP_10692864.1| DNA polymerase I [Pseudomonas sp. GM24]
gi|399012734|ref|ZP_10715052.1| DNA polymerase I [Pseudomonas sp. GM16]
gi|398114978|gb|EJM04773.1| DNA polymerase I [Pseudomonas sp. GM16]
gi|398147094|gb|EJM35812.1| DNA polymerase I [Pseudomonas sp. GM24]
Length = 934
Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats.
Identities = 102/201 (50%), Positives = 135/201 (67%), Gaps = 3/201 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ +QI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ VIIST DKDMAQLV I L+N + D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-DRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D SDN+PGV IGPKTA LL
Sbjct: 182 DSSDNIPGVPGIGPKTASGLL 202
>gi|237756074|ref|ZP_04584652.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691767|gb|EEP60797.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 299
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/253 (41%), Positives = 160/253 (63%), Gaps = 6/253 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+N +LL+DGSS +YRA+YALP + D P GA+YG I+ML K + Y+A FD
Sbjct: 1 MKNKVLLIDGSSYLYRAYYALPPLTAPDGRPTGAVYGFIRMLLKTLSVFNTPYVAVAFDL 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GK R+ + YKATRK+ P L QI ++ ++++ +G IL I G EADD+I TL+K+
Sbjct: 61 PGKTLRHEKFSEYKATRKETPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIATLSKK 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
A + II T DKDM QL+S+ I + N ++ D+ I ++G+ P++ +DY ++I
Sbjct: 121 AEI-EGYEAIIVTPDKDMNQLISDNIKIFNPVKEELLDKEKIKEKYGIYPQQFIDYLTMI 179
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLR-FALNWLPKLKKI 237
GD DN+PG+K IGPKTA LL ++ SLENI+ N + +KG + ++ + L ++K+I
Sbjct: 180 GDAVDNIPGIKGIGPKTAAALLQEFGSLENILENVDKLKGKLKESFKEVDKEQLQRMKEI 239
Query: 238 LTIKTDCDLTKNI 250
IK D ++ NI
Sbjct: 240 --IKLDANIEINI 250
>gi|398891443|ref|ZP_10644819.1| DNA polymerase I [Pseudomonas sp. GM55]
gi|398187124|gb|EJM74478.1| DNA polymerase I [Pseudomonas sp. GM55]
Length = 936
Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats.
Identities = 102/201 (50%), Positives = 134/201 (66%), Gaps = 3/201 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ +QI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDDMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ VIIST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-DRPVIISTGDKDMAQLVDGHITLVNTMTGSSMDVEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D SDN+PGV IGPKTA LL
Sbjct: 182 DSSDNIPGVPGIGPKTASGLL 202
>gi|387891333|ref|YP_006321630.1| DNA polymerase I [Pseudomonas fluorescens A506]
gi|387160474|gb|AFJ55673.1| DNA polymerase I [Pseudomonas fluorescens A506]
Length = 931
Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats.
Identities = 102/201 (50%), Positives = 133/201 (66%), Gaps = 3/201 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ LQI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDEMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
V+IST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAASR-PVVISTGDKDMAQLVDGHITLVNTMTGSSMDIEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D SDN+PGV IGPKTA LL
Sbjct: 182 DSSDNIPGVPGIGPKTASGLL 202
>gi|398963743|ref|ZP_10679810.1| DNA polymerase I [Pseudomonas sp. GM30]
gi|398149264|gb|EJM37917.1| DNA polymerase I [Pseudomonas sp. GM30]
Length = 934
Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats.
Identities = 102/201 (50%), Positives = 135/201 (67%), Gaps = 3/201 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ +QI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ VIIST DKDMAQLV I L+N + D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-DRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D SDN+PGV IGPKTA LL
Sbjct: 182 DSSDNIPGVPGIGPKTASGLL 202
>gi|398883351|ref|ZP_10638308.1| DNA polymerase I [Pseudomonas sp. GM60]
gi|398197013|gb|EJM84003.1| DNA polymerase I [Pseudomonas sp. GM60]
Length = 923
Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats.
Identities = 102/201 (50%), Positives = 134/201 (66%), Gaps = 3/201 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ +QI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDDMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ VIIST DKDMAQLV I L+N D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-DRPVIISTGDKDMAQLVDGHITLVNTMTGSSMDVEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D SDN+PGV IGPKTA LL
Sbjct: 182 DSSDNIPGVPGIGPKTASGLL 202
>gi|398976332|ref|ZP_10686238.1| DNA polymerase I [Pseudomonas sp. GM25]
gi|398139168|gb|EJM28169.1| DNA polymerase I [Pseudomonas sp. GM25]
Length = 935
Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats.
Identities = 102/201 (50%), Positives = 135/201 (67%), Gaps = 3/201 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ +QI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ VIIST DKDMAQLV I L+N + D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-DRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D SDN+PGV IGPKTA LL
Sbjct: 182 DSSDNIPGVPGIGPKTASGLL 202
>gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
Length = 916
Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats.
Identities = 103/210 (49%), Positives = 139/210 (66%), Gaps = 3/210 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG I MLR L Y+ + +A +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPSQMAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN +Y YKA R MP +L QI +HQ++KA+G P++ I GVEADDVIGT+A QA
Sbjct: 67 KTFRNDMYSEYKAQRPPMPDDLRGQIAPLHQIIKALGLPLVCIPGVEADDVIGTIATQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+K V+IST DKDMAQLV + + LIN N + + +FGV PE I+D +L GD
Sbjct: 126 SKEGRAVLISTGDKDMAQLVDDNVTLINTMTNTVMGPAEVTEKFGVGPELIIDLLALQGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENII 210
+DN+PG+ +G KTA+ +L ++NI+
Sbjct: 186 KADNIPGLPGVGEKTALAMLLGVGGVDNIL 215
>gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
Length = 935
Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats.
Identities = 102/201 (50%), Positives = 135/201 (67%), Gaps = 3/201 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML+ L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ +Y YKA R MP ++ +QI +HQ V A+G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ VIIST DKDMAQLV I L+N + D + +FGV+PE+I+DY +L+G
Sbjct: 123 AAA-DRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVDGVKEKFGVAPEQIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D SDN+PGV IGPKTA LL
Sbjct: 182 DSSDNIPGVPGIGPKTASGLL 202
>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
Length = 933
Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats.
Identities = 101/211 (47%), Positives = 140/211 (66%), Gaps = 3/211 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA+YA P + N GA+YG I MLR L Y+ + +A +FDAK
Sbjct: 20 ENPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPSQMAVVFDAK 79
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FRN +Y YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT++ QA
Sbjct: 80 GKTFRNDMYEEYKAHRPAMPDDLRSQIEPLHRIIRALGLPLVCIPGVEADDVIGTISTQA 139
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+K V+IST DKDMAQLV + LIN N I + + +FGV PE I+D +L G
Sbjct: 140 -SKEGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPSEVTEKFGVGPELIIDLLALQG 198
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENII 210
D +DN+PG+ +G KTA+ +L S++ I+
Sbjct: 199 DKADNIPGLPGVGEKTALAMLTGAGSIDKIL 229
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,162,274,669
Number of Sequences: 23463169
Number of extensions: 163462966
Number of successful extensions: 468554
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5782
Number of HSP's successfully gapped in prelim test: 384
Number of HSP's that attempted gapping in prelim test: 449798
Number of HSP's gapped (non-prelim): 6675
length of query: 284
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 143
effective length of database: 9,050,888,538
effective search space: 1294277060934
effective search space used: 1294277060934
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)