BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14489
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P00582|DPO1_ECOLI DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1
Length = 928
Score = 221 bits (562), Expect = 6e-57, Method: Composition-based stats.
Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 20/289 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + R A KL+
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGL---SFRGAKTMAAKLEQNKE 241
Query: 236 ------KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
++ TIKTD +L ++ + + QP E+LL LF KY+ +
Sbjct: 242 VAYLSYQLATIKTDVELE---LTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 218 bits (555), Expect = 4e-56, Method: Composition-based stats.
Identities = 125/292 (42%), Positives = 182/292 (62%), Gaps = 15/292 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRAF+A P + N P A+YG + ML+ L + T+IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAFHAFPSLTNAAGEPTSAMYGVLNMLKSLISQVQPTHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ ++ YK+ R MP +L QI +H M++A+G P+L+++G+EADDVIGTLA QA
Sbjct: 67 KTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLALQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+ KV+IST DKDMAQLV + I LIN NN + DR +I ++G+ PE I+DY +L+GD
Sbjct: 126 SSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRKGVIEKYGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANN-----IKGV--IGKNLRFALNWLPK 233
+DN+PGV +G KTA+ LL S+ I N I+G +G+ L N
Sbjct: 186 SADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKNNADL 245
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK-LNFLMH 284
+ TIKTD +L N+ + + L+L + L++ F +Y+ + LN +M+
Sbjct: 246 SYTLATIKTDVEL--NVTT--DQLLLGESQKDQLIEYFARYEFKRWLNEVMN 293
>sp|Q9F173|DPO1_SALTY DNA polymerase I OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=polA PE=3 SV=2
Length = 928
Score = 217 bits (553), Expect = 7e-56, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 174/286 (60%), Gaps = 14/286 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+N L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK---- 235
D SDN+PGV +G KTA LL L+ + I G+ + + L + K
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 244
Query: 236 ---KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K+ TIKTD +L ++ + + QP ++LL LF KY+ +
Sbjct: 245 LSYKLATIKTDVELE---LTCEQLEVQQPIADELL-GLFKKYEFKR 286
>sp|O67550|EX53_AQUAE 5'-3' exonuclease OS=Aquifex aeolicus (strain VF5) GN=aq_1628 PE=3
SV=1
Length = 289
Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 152/253 (60%), Gaps = 4/253 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
TL ++DGSS +YR+F+ALP + FP A+YG ++ML L K R Y+ +FDA
Sbjct: 2 KTLYILDGSSFVYRSFFALPPLSTSKGFPTNAIYGFLRMLFSLIKKERPQYLVVVFDAPA 61
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K R +Y YK R K P L +QI +I +++K G P+L + G EADDVI LA +
Sbjct: 62 KTKREKIYADYKKQRPKAPDPLKVQIPVIKEILKLAGIPLLELPGYEADDVIAYLA-EKF 120
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ KV I + DKD+ QLVS + +IN N+++ + +I +FGV P+KI DY +L+GD
Sbjct: 121 SQKGFKVKIYSPDKDLLQLVSENVLVINPMNDEVFTKERVIKKFGVEPQKIPDYLALVGD 180
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
DN+PG++ +GPKTA+ +L +Y S+ENI+ N + + + L KL K+ T
Sbjct: 181 KVDNVPGIEGVGPKTAINILKKYGSVENILKNWEKFQREFPRAKKEDLELSYKLVKLYT- 239
Query: 241 KTDCDLTKNIVSI 253
D +L++ + I
Sbjct: 240 DLDIELSEEDLKI 252
>sp|Q9HT80|DPO1_PSEAE DNA polymerase I OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=polA PE=3 SV=1
Length = 913
Score = 182 bits (462), Expect = 2e-45, Method: Composition-based stats.
Identities = 115/281 (40%), Positives = 162/281 (57%), Gaps = 24/281 (8%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+LVDGSS +YRAF+ALP + P GA+ G + ML L K Y + A +FDAK
Sbjct: 3 QAPLVLVDGSSYLYRAFHALPPLTTSTGKPTGAVKGVLNMLLSLRKQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ L+ YKA R MP +L +Q+ +H V+A+G P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IST DKDMAQLV I L+N D + +FGV PE I+D+ +L+G
Sbjct: 123 AAA-DRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQ--------YNSLENI----INNANNIKGVIGKNLRFA 227
D DN+PGV +G KTA+ LL Y SL+ + I A + + +N A
Sbjct: 182 DKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEENREQA 241
Query: 228 -LNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLL 267
L++ ++ TIKTD +L V I + +P+ E L+
Sbjct: 242 FLSY-----QLATIKTDVELD---VEIDKLYPGEPQREALI 274
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 179 bits (453), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 138/222 (62%), Gaps = 5/222 (2%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
+NTLLL+DG ++RA+YA + + PVGALYG ML KL +++ ++A +FD+
Sbjct: 3 QKNTLLLIDGYGFVFRAYYAQQPLTSPKGEPVGALYGFTSMLLKLLSDFKPKHVAVVFDS 62
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLA-K 119
GKNFR+ +YP YKA R P +LI+Q+ L+ + + +PIL G EADD+I T A K
Sbjct: 63 GGKNFRHYIYPEYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADDIIATFATK 122
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A N V+I ++DKD+ QL+S I + + K ++ +FG + +K+ + +L
Sbjct: 123 TAALGEN--VVIISSDKDLLQLMSENIKIYDPLRGKYITEDDVVKKFGTTSDKLREVMAL 180
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV 219
IGD SDN+PGV IGPKTA L+ Q+ S+ENI N+ + + V
Sbjct: 181 IGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSV 222
>sp|Q9RLA0|DPO1_RICTY DNA polymerase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=polA PE=3 SV=1
Length = 872
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 163/274 (59%), Gaps = 17/274 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+NTLLL+DG ++RA+YA + + PVGALYG ML KL +++ Y A +FD+
Sbjct: 4 KNTLLLIDGYGFVFRAYYAQQSLSSAKGEPVGALYGFTSMLLKLLSDFKPQYGAIVFDSG 63
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GKNFR+ +Y +YKA R P +LI Q+ LI + + + IL G EADD+I T A +
Sbjct: 64 GKNFRHKIYQNYKANRPTPPEDLIGQLPLIRDVASHLNFAILEKNGYEADDIIATFATKT 123
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTT--IISRFGVSPEKIVDYFSLIG 179
+T +VII ++DKD+ QL+S I + + K T +I +FG +P+K+ + +LIG
Sbjct: 124 ITLGK-EVIIISSDKDLLQLMSKNIKIYDPIKCKYITEDDVIIKFGTTPDKLREVMALIG 182
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGK----NLRFA--LNWLPK 233
D SDN+PGV IGPKTA L+ Q+ S+ENI N+ + I + + N R A ++W
Sbjct: 183 DRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQISSIKQRKTLQNSREAALISW--- 239
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLL 267
+++ + ++ DL N+ ++ S P EKL+
Sbjct: 240 --RLIGLDSNVDLDFNLNNLEWS---HPNSEKLI 268
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 139/223 (62%), Gaps = 7/223 (3%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
+NTLLL+DG ++RA+YA + + PVGALYG ML KL +++ ++A +FD+
Sbjct: 3 QKNTLLLIDGYGFVFRAYYAQQPLTSPKGEPVGALYGFTSMLLKLLSDFKPKHVAVVFDS 62
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GKNFR+ +YP YKA R P +LI+Q+ L+ + + +PIL G EADD+I T A +
Sbjct: 63 GGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADDIIATFATK 122
Query: 121 --AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFS 176
A+ H V+I ++DKD+ QL++ I + + K ++ +FG + +K+ + +
Sbjct: 123 TAALGAH---VVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKLREVMA 179
Query: 177 LIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV 219
LIGD SDN+PGV IGPKTA L+ Q+ S+ENI N+ + + V
Sbjct: 180 LIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSV 222
>sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (strain RML369-C) GN=polA
PE=3 SV=1
Length = 871
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 137/220 (62%), Gaps = 3/220 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+NTLLL+DG ++RA+YA + + PVGALYG ML KL +++ + A +FD+
Sbjct: 4 KNTLLLIDGYGFVFRAYYAQQPLTSPKGEPVGALYGFTSMLLKLLNDFKPKHAAVVFDSG 63
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GKNFR+ +YP YKA R P +LI Q+ L+ + + + +PIL G EADD+I T A +
Sbjct: 64 GKNFRHEIYPEYKANRPPPPEDLIAQLPLVRDVARNLNFPILEKNGFEADDIIATFAAKT 123
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ V+IS+ DKD+ QL+++ + + + K ++ +FGV+ +K+ + +LIG
Sbjct: 124 ASIGEEVVVISS-DKDLLQLMNDNVKIYDPLKAKYITEDNVVEKFGVTSDKLREVMALIG 182
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV 219
D SDN+PGV IGPKTA L+ Q+ ++ENI N+ + +
Sbjct: 183 DKSDNIPGVPSIGPKTASSLITQFGTVENIFNSLEQVSSI 222
>sp|O05949|DPO1_RICPR DNA polymerase I OS=Rickettsia prowazekii (strain Madrid E) GN=polA
PE=3 SV=1
Length = 867
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 138/220 (62%), Gaps = 3/220 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+NTLLL+DG ++RA+YA + + PVGALYG ML KL +++ Y+A +FD+
Sbjct: 4 KNTLLLIDGYGFVFRAYYAQKSLSSAKGEPVGALYGFTSMLLKLLSDFKPQYVAIVFDSG 63
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GKNFR+ +Y +YKA R P +LI Q+ L+ + + IL G EADD+I T A +
Sbjct: 64 GKNFRHKIYQNYKANRPLPPKDLIAQLPLVRDVASNFKFAILEKNGYEADDIIATFATKT 123
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINNNKIH--DRTTIISRFGVSPEKIVDYFSLIG 179
V+ +VII ++DKD+ QL+S I + + K ++++FG +P+K+ + +LIG
Sbjct: 124 VSLGE-EVIIISSDKDLLQLMSKNIKIYDPIKCKYITEDNVVTKFGTTPDKLREVMALIG 182
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV 219
D SDN+PGV IGPKTA L+ ++ S+ENI N+ + I +
Sbjct: 183 DRSDNIPGVPSIGPKTASSLITKFGSVENIFNSLDQISSI 222
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 134/221 (60%), Gaps = 3/221 (1%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
+NTLLL+DG ++RA+YA + + PVGALYG ML KL +++ ++A +FD+
Sbjct: 3 QKNTLLLIDGYGFVFRAYYAQQPLTSPKGEPVGALYGFASMLLKLLSDFKPKHVAVVFDS 62
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
GKNFR+ +YP YKA R P +L++Q+ L+ + + +PIL G EADD+I T A +
Sbjct: 63 GGKNFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNFPILEKNGYEADDIIATFAAK 122
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
V+IS+ DKD+ QL+ I + + K ++ +FG + +K+ + +LI
Sbjct: 123 TAALGEDVVVISS-DKDLLQLMGENIKIYDPLKGKYITEDDVVKKFGTTSDKLREVMALI 181
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV 219
GD SDN+PGV IGPKTA L+ Q+ S+ENI N+ + +
Sbjct: 182 GDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLEQVSSL 222
>sp|P57506|EX53_BUCAI 5'-3' exonuclease OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=BU431 PE=3 SV=1
Length = 286
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 146/226 (64%), Gaps = 4/226 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYR-ATYIACIFDAK 61
N ++++DGS +Y ++YA ++ N P GA+YG +K++ ++K Y+ I IFD+
Sbjct: 7 NPVIIIDGSLYLYASYYAFCNLENTSGKPCGAIYGMLKIIDNIFKKYKNLKKIIIIFDSS 66
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
K FRN L+ YK R MP L++QI + +++K IG L I G+EADDVIG+L+ Q
Sbjct: 67 RKTFRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIGSLSYQ- 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ K K++I ++DKDM QLV+ I + + NN I I ++G+ P++ +D+ +L+G
Sbjct: 126 LEKQGEKILILSHDKDMLQLVTENINIFHKKNNCIITSEIIQEKYGIKPKEFIDFLALMG 185
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLR 225
D +DN+PGV KIG KTA+ L+N+++++ENI NN IK + +N +
Sbjct: 186 DATDNIPGVPKIGIKTALFLINKFSNIENIYNNIEKIKSLPLRNAK 231
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 145/254 (57%), Gaps = 11/254 (4%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L++ DG+S +YRAF+ALP++ +N P A+YG + ++ K + + Y+A FD +G+
Sbjct: 3 LVIFDGNSILYRAFFALPELTTSNNIPTNAIYGFVNVILKYLEQEKPDYVAVAFDKRGRE 62
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
R Y YKA RK MP NL +QI + +++ A PI+ +G EADDVIG+L Q
Sbjct: 63 ARKSEYEEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLVNQ-FKN 121
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTT--------IISRFGVSPEKIVDYFS 176
L ++I T D+D QL+ + + + D+T + ++GV ++ DY +
Sbjct: 122 TGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDKTVEDLYTVENVKEKYGVWANQVPDYKA 181
Query: 177 LIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK 236
L+GD SDN+PGVK IG K+A KLL +Y+SLE I N + IK I + L + K+
Sbjct: 182 LVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKSSIREKLEAGKDMAFLSKR 241
Query: 237 ILTIKTDCDLTKNI 250
+ TI CDL N+
Sbjct: 242 LATIV--CDLPLNV 253
>sp|P52028|DPO1T_THET8 DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8
/ ATCC 27634 / DSM 579) GN=polA PE=3 SV=2
Length = 834
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 137/219 (62%), Gaps = 6/219 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKN--YRATYIACIFD 59
+ +LLVDG YR F+AL + PV A+YG K L K K Y+A ++ +FD
Sbjct: 11 KGRVLLVDGHHLAYRTFFALKGLTTSRGEPVQAVYGFAKSLLKALKEDGYKAVFV--VFD 68
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
AK +FR+ Y +YKA R P + Q+ LI ++V +G+ L + G EADDV+ TLAK
Sbjct: 69 AKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATLAK 128
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN-NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
+A K +V I T D+D+ QLVS+++A+++ + + ++G+ PE+ VD+ +L+
Sbjct: 129 KA-EKEGYEVRILTADRDLYQLVSDRVAVLHPEGHLITPEWLWEKYGLRPEQWVDFRALV 187
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIK 217
GD SDNLPGVK IG KTA+KLL ++ SLEN++ N + +K
Sbjct: 188 GDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVK 226
>sp|P0A550|DPO1_MYCTU DNA polymerase I OS=Mycobacterium tuberculosis GN=polA PE=3 SV=1
Length = 904
Score = 168 bits (425), Expect = 5e-41, Method: Composition-based stats.
Identities = 96/284 (33%), Positives = 157/284 (55%), Gaps = 13/284 (4%)
Query: 4 TLLLVDGSSCIYRAFYALP--DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
TL+L+DG+S +RAFYALP + + A+YG ML L ++ T+IA FD
Sbjct: 16 TLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDEAPTHIAAAFDVS 75
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
+ FR YP YKA R P QI++ +++ A+G +L G EADD+I TLA QA
Sbjct: 76 RQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQA 135
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTT------IISRFGVSPEKIVDYF 175
+V++ T D+D QLVS+ + ++ K T ++ ++G++P + D+
Sbjct: 136 -ENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPDFA 194
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L GD SDNLPG+ +G KTA K + +Y SL ++++N + ++G +G LR L + + +
Sbjct: 195 ALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVRNR 254
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
++ + D L + P++L LQP D + +LF+ + L
Sbjct: 255 ELTDLVRDVPLAQT----PDTLRLQPWDRDHIHRLFDDLEFRVL 294
>sp|P0A551|DPO1_MYCBO DNA polymerase I OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=polA PE=3 SV=1
Length = 904
Score = 168 bits (425), Expect = 5e-41, Method: Composition-based stats.
Identities = 96/284 (33%), Positives = 157/284 (55%), Gaps = 13/284 (4%)
Query: 4 TLLLVDGSSCIYRAFYALP--DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
TL+L+DG+S +RAFYALP + + A+YG ML L ++ T+IA FD
Sbjct: 16 TLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDEAPTHIAAAFDVS 75
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
+ FR YP YKA R P QI++ +++ A+G +L G EADD+I TLA QA
Sbjct: 76 RQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQA 135
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTT------IISRFGVSPEKIVDYF 175
+V++ T D+D QLVS+ + ++ K T ++ ++G++P + D+
Sbjct: 136 -ENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPDFA 194
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK 235
+L GD SDNLPG+ +G KTA K + +Y SL ++++N + ++G +G LR L + + +
Sbjct: 195 ALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVRNR 254
Query: 236 KILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
++ + D L + P++L LQP D + +LF+ + L
Sbjct: 255 ELTDLVRDVPLAQT----PDTLRLQPWDRDHIHRLFDDLEFRVL 294
>sp|Q9S1G2|DPO1_RHILE DNA polymerase I OS=Rhizobium leguminosarum GN=polA PE=3 SV=1
Length = 1016
Score = 167 bits (422), Expect = 1e-40, Method: Composition-based stats.
Identities = 94/227 (41%), Positives = 132/227 (58%), Gaps = 15/227 (6%)
Query: 5 LLLVDGSSCIYRAFYALPDI-RNIDNFPVGALYGTIKMLRKLYKNYR-------ATYIAC 56
L LVDGS I+RAF+ALP + R D P+GA+ G ML KL ++ R T++A
Sbjct: 24 LFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVTPTHLAV 83
Query: 57 IFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGT 116
IFD K FR LY +YKA R P LI Q LI + +A P + +G EADD+I T
Sbjct: 84 IFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEADDIIAT 143
Query: 117 LAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTT----IISRFGVSPEKIV 172
A+QA V I ++DKD+ QLVS + + ++ K D+ +I ++GV PEK++
Sbjct: 144 YARQAEAT-GADVTIVSSDKDLMQLVSPNVHMYDSMK--DKQIGIPDVIEKWGVPPEKMI 200
Query: 173 DYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV 219
D ++ GD DN+PG+ IGPKTA +LL +Y L+ ++ A IK V
Sbjct: 201 DLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQV 247
>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
SV=2
Length = 834
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 6/219 (2%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKN--YRATYIACIFD 59
+ +LLVDG YR F+AL + PV A+YG K L K K Y+A ++ +FD
Sbjct: 11 KGRVLLVDGHHLAYRTFFALKGLTTSRGEPVQAVYGFAKSLLKALKEDGYKAVFV--VFD 68
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
AK +FR+ Y +YKA R P + Q+ LI ++V +G+ L + G EADDV+ TLAK
Sbjct: 69 AKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATLAK 128
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN-NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
K +V I T D+D+ QLVS+++A+++ + + ++G+ PE+ VD+ +L+
Sbjct: 129 NP-EKEGYEVRILTADRDLDQLVSDRVAVLHPEGHLITPEWLWQKYGLKPEQWVDFRALV 187
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIK 217
GD SDNLPGVK IG KTA+KLL ++ SLEN++ N + +K
Sbjct: 188 GDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVK 226
>sp|P46835|DPO1_MYCLE DNA polymerase I OS=Mycobacterium leprae (strain TN) GN=polA PE=3
SV=1
Length = 911
Score = 164 bits (415), Expect = 6e-40, Method: Composition-based stats.
Identities = 97/283 (34%), Positives = 153/283 (54%), Gaps = 13/283 (4%)
Query: 5 LLLVDGSSCIYRAFYALP--DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
L+L+DG+S +RAFYALP + + A+YG ML L + T+IA FD
Sbjct: 18 LMLLDGNSLAFRAFYALPTENFKTRGGLTTNAVYGFTAMLINLLREEAPTHIAAAFDVSR 77
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ Y YKA R +P QI++ +++ A+G + G EADD+I TLA QA
Sbjct: 78 KTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEADDLIATLATQA- 136
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTT------IISRFGVSPEKIVDYFS 176
+V++ T D+D QLVSN + ++ K T +I ++GV+P + D +
Sbjct: 137 ENEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGVTPAQYPDLAA 196
Query: 177 LIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK 236
L GD SDNLPG+ +G KTA K + Y SL+ +++N +++G +G+ LR L + + ++
Sbjct: 197 LRGDPSDNLPGIPGVGEKTAAKWIVDYGSLQGLVDNVESVRGKVGEALRTHLASVVRNRE 256
Query: 237 ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ + D L V ++L LQP D + +LF+ + L
Sbjct: 257 LTELVKDVPL----VQTSDTLRLQPWDRDRIHRLFDNLEFRVL 295
>sp|P52026|DPO1_GEOSE DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1
SV=2
Length = 876
Score = 163 bits (412), Expect = 2e-39, Method: Composition-based stats.
Identities = 88/232 (37%), Positives = 139/232 (59%), Gaps = 8/232 (3%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+N L+L+DG+S YRAF+ALP + N A+YG ML K+ + T+I FDA
Sbjct: 1 MKNKLVLIDGNSVAYRAFFALPLLHNDKGIHTNAVYGFTMMLNKILAEEQPTHILVAFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
FR+ + YK R++ P L Q L+ +++KA P + EADD+IGT+A +
Sbjct: 61 GKTTFRHETFQDYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGTMAAR 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIAL------INNNKIHDRTTIISRFGVSPEKIVDY 174
A + V + + D+D+ QL S ++ + I + + + T++ ++G++PE+IVD
Sbjct: 121 A-EREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTPEQIVDL 179
Query: 175 FSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG-VIGKNLR 225
L+GD SDN+PGV IG KTAVKLL Q+ ++EN++ + + IKG + +NLR
Sbjct: 180 KGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLR 231
>sp|Q8K9D0|EX53_BUCAP 5'-3' exonuclease OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=pol PE=3 SV=1
Length = 287
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 165/282 (58%), Gaps = 11/282 (3%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRK-LYKNYRATYIACIFDAKGK 63
+++VDGS +YR+++ + + + P GA+YG +K ++ L KNY + I IFD+ K
Sbjct: 9 IIIVDGSLYLYRSYFTFQNFNSNEENPSGAIYGMLKTIQNILNKNYNSKKIIIIFDSSKK 68
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
NFRN ++ YK+ R MP L +QI + ++++ IG L I G+EADD+IG+LA +
Sbjct: 69 NFRNTIFKEYKSNRSAMPNKLYVQIQPLFKILEEIGIKTLSILGIEADDIIGSLAYKLEQ 128
Query: 124 KHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K +V+I ++DKDM QL+++ I ++N N I I ++G+ P++ +D +L+GD
Sbjct: 129 KGE-QVLIVSHDKDMIQLITDNINVLNISKNSILTPEKIQEKYGIYPKEFIDLLALMGDS 187
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI- 240
SDN+PGV KIG KTA+ LL ++++++NI NN I+ + +N + A L KK +
Sbjct: 188 SDNIPGVPKIGIKTALFLLKKFSNIKNIYNNIEKIQSLPFRNAKNAAIQLKNYKKTAFLS 247
Query: 241 ----KTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNK 278
K D+ NI S E + L+ K L L Y N+
Sbjct: 248 YQLAKIKLDVPINITS--EEITLKKTCFKKLSNLIRWYSFNE 287
>sp|P30313|DPO1F_THETH DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1
SV=1
Length = 831
Score = 161 bits (407), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 141/246 (57%), Gaps = 3/246 (1%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+ +LLVDG YR F+AL + PV A+YG K L K K + +FDAK
Sbjct: 10 KGRVLLVDGHHLAYRTFFALKGLTTSRGEPVQAVYGFAKSLLKALKE-DGDVVVVVFDAK 68
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
+FR+ Y +YKA R P + Q+ LI ++V +G L + G EADDV+ TLAK+A
Sbjct: 69 APSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDVLATLAKRA 128
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN-NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
K +V I T D+D+ QL+S +IA+++ + + ++G+ PE+ VDY +L GD
Sbjct: 129 -EKEGYEVRILTADRDLYQLLSERIAILHPEGYLITPAWLYEKYGLRPEQWVDYRALAGD 187
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240
SDN+PGVK IG KTA +L+ ++ SLEN+ + + +K + + L+ + L +K+ +
Sbjct: 188 PSDNIPGVKGIGEKTAQRLIREWGSLENLFQHLDQVKPSLREKLQAGMEALALSRKLSQV 247
Query: 241 KTDCDL 246
TD L
Sbjct: 248 HTDLPL 253
>sp|Q89AD1|EX53_BUCBP 5'-3' exonuclease OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=pol PE=3 SV=1
Length = 302
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 155/261 (59%), Gaps = 13/261 (4%)
Query: 6 LLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNF 65
LL+DG+S +YRA+YA +N N P GA+YG + MLR + Y + I IFD+ K F
Sbjct: 11 LLIDGTSYLYRAYYAFLKFKNNFNKPCGAIYGMLNMLRSMLLKYPYSNIVVIFDSPQKTF 70
Query: 66 RNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKH 125
RN L+ YK R KMP +L QI IH ++K IG PI+ I VEADD+IGTLA + K
Sbjct: 71 RNELFIPYKKNRPKMPNDLKEQILPIHHIIKHIGIPIISIPHVEADDIIGTLATKLYKKK 130
Query: 126 NLKVIISTNDKDMAQLVSNKIALI--NNNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSD 183
++ISTNDKD+AQLV+ I ++ +N + D + + ++G+ P+ I D L+GD SD
Sbjct: 131 YF-ILISTNDKDLAQLVNIHIHVLIGTSNIVLDESKVKKKYGIIPKLIPDLLGLMGDNSD 189
Query: 184 NLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLK-------K 236
N+PGV +G KTA+ LL + SLENI NN I + K + N L K K
Sbjct: 190 NIPGVPTVGKKTALILLKTFGSLENIYNNIEKIPKCLIKKAKTIYNNLHTYKKLAFLSQK 249
Query: 237 ILTIKTDCDL---TKNIVSIP 254
+ TIKTD ++ TK I +P
Sbjct: 250 LATIKTDINVNITTKKIKMLP 270
>sp|Q04957|DPO1_BACCA DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1
Length = 877
Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats.
Identities = 93/280 (33%), Positives = 155/280 (55%), Gaps = 12/280 (4%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ L+L+DGSS YRAF+ALP + N A+YG ML K+ T++ FDA
Sbjct: 1 MKKKLVLIDGSSVAYRAFFALPLLHNDKGIHTNAVYGFTMMLNKILAEEEPTHMLVAFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
FR+ + YK R++ P L Q L+ ++++A P ++ EADD+IGTLA +
Sbjct: 61 GKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTLAAR 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIAL------INNNKIHDRTTIISRFGVSPEKIVDY 174
A + +V + + D+D+ QL S + + I + + + + ++G++PE+IVD
Sbjct: 121 A-EQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPEAVREKYGLTPEQIVDL 179
Query: 175 FSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG-VIGKNLRFALNWLPK 233
L+GD SDN+PGV IG KTAVKLL Q+ ++EN++ + + IKG + + LR
Sbjct: 180 KGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREMALL 239
Query: 234 LKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNK 273
KK+ I+ D + ++ + + Q +D + ++ LF +
Sbjct: 240 SKKLAAIRRDAPVELSL----DDIAYQGEDREKVVALFKE 275
>sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable OS=Thermus aquaticus GN=polA PE=1
SV=1
Length = 832
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 140/249 (56%), Gaps = 9/249 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+ +LLVDG YR F+AL + PV A+YG K L K K + +FDAK
Sbjct: 11 KGRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKE-DGDAVIVVFDAK 69
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
+FR+ Y YKA R P + Q+ LI ++V +G L + G EADDV+ +LAK+A
Sbjct: 70 APSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKA 129
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALIN-NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
K +V I T DKD+ QL+S++I +++ + + ++G+ P++ DY +L GD
Sbjct: 130 -EKEGYEVRILTADKDLYQLLSDRIHVLHPEGYLITPAWLWEKYGLRPDQWADYRALTGD 188
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNL-----RFALNW-LPKL 234
SDNLPGVK IG KTA KLL ++ SLE ++ N + +K I + + L+W L K+
Sbjct: 189 ESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLSWDLAKV 248
Query: 235 KKILTIKTD 243
+ L ++ D
Sbjct: 249 RTDLPLEVD 257
>sp|O52225|DPO1_THEFI DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1
SV=1
Length = 833
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 127/214 (59%), Gaps = 4/214 (1%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
+LLVDG YR FYAL + PV +YG + L K K + +FDAK +
Sbjct: 14 VLLVDGHHLAYRTFYAL-SLTTSRGEPVQMVYGFARSLLKALKE-DGQAVVVVFDAKAPS 71
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ Y +YKA R P + Q+ L+ ++V +G L G EADDV+GTLAK+A +
Sbjct: 72 FRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTLAKKA-ER 130
Query: 125 HNLKVIISTNDKDMAQLVSNKIA-LINNNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSD 183
++V I T D+D QL+S K++ L+ + + + ++GV PE+ VD+ +L GD SD
Sbjct: 131 EGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQEKYGVPPERWVDFRALTGDRSD 190
Query: 184 NLPGVKKIGPKTAVKLLNQYNSLENIINNANNIK 217
N+PGV IG KTA++LL ++ S+EN++ N + +K
Sbjct: 191 NIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVK 224
>sp|P74933|DPO1_TREPA DNA polymerase I OS=Treponema pallidum (strain Nichols) GN=polA
PE=3 SV=2
Length = 997
Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats.
Identities = 86/223 (38%), Positives = 130/223 (58%), Gaps = 8/223 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALP--DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
+ TL L+D IYR+++A + N V A+YG + L L +YR Y +FD
Sbjct: 4 KKTLYLLDAYGLIYRSYHAFARAPLINDSGANVSAVYGFFRSLHTLLCHYRPRYFVAVFD 63
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
+ FR++ YP+YKA R K L QI LI +++ A+G +L G EADD+I TLAK
Sbjct: 64 SLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEADDLIATLAK 123
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALINNNKIH-----DRTTIISRFGVSPEKIVDY 174
+ +H VIIS+ DKD+ QLV + + ++ + H D + R+ V P +++D
Sbjct: 124 RVAAEHCHVVIISS-DKDVLQLVCDTVQVLRLDIDHKWTCCDAAYVQQRWTVMPTQLLDL 182
Query: 175 FSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIK 217
FSL+GD SDN+PGV+ IGPKTA LL+ + +L+ I + ++K
Sbjct: 183 FSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLK 225
>sp|P75403|EX53_MYCPN 5'-3' exonuclease OS=Mycoplasma pneumoniae (strain ATCC 29342 /
M129) GN=polA PE=3 SV=1
Length = 291
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 159/285 (55%), Gaps = 16/285 (5%)
Query: 6 LLVDGSSCIYRAFYAL---PDIRNIDNFPVG-ALYGTIKMLRKLYKNYRATYIACIFDAK 61
+L+DG+S YRA++A + + N P A+ + M L ++ + Y FD K
Sbjct: 5 ILIDGNSLAYRAYFATWQQVEFAKLHNLPFNNAIRTMLMMCWNLLQSKQYDYGVISFDTK 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
FR+ LY YK+ R K P L++QI ++ + ++ +G+ + G EADD+IG+ A+
Sbjct: 65 APTFRDQLYSEYKSKRSKTPSELLVQIPVVKESLRHLGFLVCEQDGFEADDLIGSYAR-L 123
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIAL------INNNKIHDRTTIISRF-GVSPEKIVDY 174
+T++N+ V I ++D+D+ QLV + ++ K ++ +F G++P+++++Y
Sbjct: 124 MTQNNVAVDIYSSDRDLLQLVDSMTSVWLCVKGTKEMKEYNTDNFAEQFFGLTPKQVIEY 183
Query: 175 FSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL 234
L+GD SDNL G+K IGPK + LL QY +++NI N + + + L+ ++ K
Sbjct: 184 KGLVGDNSDNLTGIKGIGPKKGIDLLKQYGTIDNIFANFDKLSKALQTILQGQIDTAKKF 243
Query: 235 KKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ +IKTD L +IV L+P D++ L++L +KY + L
Sbjct: 244 SFLASIKTDIKLNDDIVHAA----LKPIDKQALLELLDKYGIKAL 284
>sp|O34996|DPO1_BACSU DNA polymerase I OS=Bacillus subtilis (strain 168) GN=polA PE=3
SV=1
Length = 880
Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats.
Identities = 89/252 (35%), Positives = 142/252 (56%), Gaps = 14/252 (5%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+ L+LVDG+S YRAF+ALP + N A+YG +L K+ ++ + T++ FDA
Sbjct: 4 RKKLVLVDGNSLAYRAFFALPLLSNDKGVHTNAVYGFAMILMKMLEDEKPTHMLVAFDAG 63
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
FR+ + YK R+K P L Q+ I +++ A ++ EADD+IGTLAK A
Sbjct: 64 KTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDIIGTLAKSA 123
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIAL------INNNKIHDRTTIISRFGVSPEKIVDYF 175
K +V + + DKD+ QL ++K + I + + + + ++G++PE+I+D
Sbjct: 124 -EKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTPEQIIDMK 182
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL- 234
L+GD SDN+PGV +G KTA+KLL Q++S+E ++ +I V GK L+ L
Sbjct: 183 GLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLL---ESIDEVSGKKLKEKLEEFKDQA 239
Query: 235 ---KKILTIKTD 243
K++ TI TD
Sbjct: 240 LMSKELATIMTD 251
>sp|O08307|DPO1_CHLAA DNA polymerase I OS=Chloroflexus aurantiacus (strain ATCC 29366 /
DSM 635 / J-10-fl) GN=polA PE=3 SV=1
Length = 942
Score = 146 bits (368), Expect = 2e-34, Method: Composition-based stats.
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 13/217 (5%)
Query: 5 LLLVDGSSCIYRAFYALPD--IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
L+LVDG + YRAF+AL + +R+ P A++G ++L YR Y A FD G
Sbjct: 6 LVLVDGHALAYRAFFALRESGLRSSRGEPTYAVFGFAQILLTALAEYRPDYAAVAFDV-G 64
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
+ FR+ LY YKA R + P Q I Q+V+A+ PI +G EADDVIGTLA+QA
Sbjct: 65 RTFRDDLYAEYKAGRAETPEEFYPQFERIKQLVQALNIPIYTAEGYEADDVIGTLARQA- 123
Query: 123 TKHNLKVIISTNDKDMAQLVSN--KIALIN------NNKIHDRTTIISRF-GVSPEKIVD 173
T+ + II T D D+ QLV++ ++AL N + ++D + R+ G+ P+++ D
Sbjct: 124 TERGVDTIILTGDSDVLQLVNDHVRVALANPYGGKTSVTLYDLEQVRKRYDGLEPDQLAD 183
Query: 174 YFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENII 210
L GD SDN+PGV+ IG K A+ LL Q+ SL+ ++
Sbjct: 184 LRGLKGDTSDNIPGVRGIGEKGAIALLKQFRSLDALL 220
>sp|P52027|DPO1_DEIRA DNA polymerase I OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=polA PE=3 SV=2
Length = 956
Score = 145 bits (365), Expect = 4e-34, Method: Composition-based stats.
Identities = 81/213 (38%), Positives = 127/213 (59%), Gaps = 3/213 (1%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
+TL+L+DG + +R+++ALP + N A+ G +K+L +L + ++ + +FD
Sbjct: 47 DTLVLIDGHALAFRSYFALPPLNNSKGEMTHAIVGFMKLLLRLARQ-KSNQVIVVFDPPV 105
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ Y YK+ R + P +L QIN I +V A+G+P L G EADDVI +L + A
Sbjct: 106 KTFRHEQYEGYKSGRAQTPEDLPGQINRIRALVDALGFPRLEEPGYEADDVIASLTRMAE 165
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALINNN-KIHDRTTIISRFGVSPEKIVDYFSLIGDM 181
K +V I T+D+D QL+ + +I N+ + + ++GV+ + VDY +L GD
Sbjct: 166 GK-GYEVRIVTSDRDAYQLLDEHVKVIANDFSLIGPAQVEEKYGVTVRQWVDYRALTGDA 224
Query: 182 SDNLPGVKKIGPKTAVKLLNQYNSLENIINNAN 214
SDN+PG K IGPKTA KLL +Y +LE + A+
Sbjct: 225 SDNIPGAKGIGPKTAAKLLQEYGTLEKVYEAAH 257
>sp|P54161|EX53_BACSU 5'-3' exonuclease OS=Bacillus subtilis (strain 168) GN=ypcP PE=1
SV=1
Length = 296
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 129/231 (55%), Gaps = 13/231 (5%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNI----DNFPVGALYGTIKMLRKLYKNYRATYIACIF 58
N LLLVDG + ++RAF+A RN P + G +K L + ++ T++ C +
Sbjct: 4 NKLLLVDGMALLFRAFFATAVHRNFMINDSGVPTNGVNGFLKHLITAVETFQPTHVVCCW 63
Query: 59 DAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLA 118
D K +RN L+ YKA R P LI Q +L + +G + G EADD IGTLA
Sbjct: 64 DMGSKTYRNDLFQDYKANRSAPPVELIPQFDLAKEAAAELGIMNIGFAGYEADDCIGTLA 123
Query: 119 KQAVTKHNLKVIISTNDKDMAQLVSNKIAL------INNNKIHDRTTIISRFGVSPEKIV 172
+ ++ V+ T D+D+ QL+++K+++ I N K++ + T GV P+ ++
Sbjct: 124 DLFANEADITVV--TGDRDLLQLLTDKVSVALLQKGIGNYKVYTKETFYEETGVMPKALI 181
Query: 173 DYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI-KGVIGK 222
D +L+GD SDN PGVK IG KTA KL+ +Y +++ ++ N + + KG GK
Sbjct: 182 DIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLENLSLLPKGQQGK 232
>sp|Q49406|EX53_MYCGE 5'-3' exonuclease OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=polA PE=3 SV=1
Length = 291
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 150/285 (52%), Gaps = 16/285 (5%)
Query: 6 LLVDGSSCIYRAFYAL---PDIRNIDNFPVG-ALYGTIKMLRKLYKNYRATYIACIFDAK 61
+L+DG+S YRA++A + +N P A+ + M L K Y FD K
Sbjct: 5 ILIDGNSLAYRAYFATWKQVEYAKQNNLPFNNAIRTMLLMCWNLIKANVYQYGIVSFDTK 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
FR+ +Y YK R K P L++QI LI Q + +G+ + G EADD+IG+ A
Sbjct: 65 APTFRDQIYEGYKQKRVKTPVELLVQIPLIKQALVYLGFLVCEKDGFEADDLIGSYAN-L 123
Query: 122 VTKHNLKVIISTNDKDMAQLV---SNKIALINNNK---IHDRTTIISRF-GVSPEKIVDY 174
TK + V I ++D+DM QLV +N I K +++ S F G++P ++V+Y
Sbjct: 124 FTKQEITVDIYSSDRDMLQLVNAFTNVFLCIKGTKEMVMYNNENFKSLFYGLAPYQVVEY 183
Query: 175 FSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL 234
L+GD SDNL G+K IGP ++LL QY +++NI N NN+ + K L
Sbjct: 184 KGLVGDNSDNLAGIKGIGPIKGIELLQQYGTIDNIYTNFNNLPNQLQKLLNNQKEIAKTF 243
Query: 235 KKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ IKTD +L +NI + L+P ++ L+QL ++ K+N L
Sbjct: 244 SFLAKIKTDIELDQNI----DLTGLKPIQKQALIQLLSENKINTL 284
>sp|O32801|DPO1_LACLM DNA polymerase I OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=polA PE=3 SV=2
Length = 877
Score = 131 bits (330), Expect = 5e-30, Method: Composition-based stats.
Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 20/292 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNF--PVG----ALYGTIKMLRKLYKNYRATYIA 55
+N LLL+DGSS +RAF+AL + +D F P G A++ ML L + + T++
Sbjct: 4 KNRLLLIDGSSVAFRAFFALYN--QLDRFKAPNGLHTNAIFAFHTMLSSLMERIQPTHVL 61
Query: 56 CIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIG 115
FDA FR ++ YK R K P Q+ I +M++ +G + EADD+IG
Sbjct: 62 IAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEADDIIG 121
Query: 116 TLAKQAVTKH-NLKVIISTNDKDMAQLVS-NKIALINNNKIHDRTT-----IISRFGVSP 168
TL K A N V I T DKDM QLV N I+ + + ++ + G++P
Sbjct: 122 TLDKMAEAPDVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEKMGLTP 181
Query: 169 EKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL 228
+ +D +L+GD SDN PGV K+G KT +KLL ++ SLEN+ N +K K+ A
Sbjct: 182 SQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKDNLIAD 241
Query: 229 NWLPKL-KKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
+ L +++ TI T L + E +L+ K+ L Q +++ ++
Sbjct: 242 KEMAFLSQQLATINTKAPLEIGL----EDTLLKEKNVAELGQFYDEMGFSQF 289
>sp|Q9CDS1|DPO1_LACLA DNA polymerase I OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=polA PE=3 SV=1
Length = 877
Score = 130 bits (328), Expect = 9e-30, Method: Composition-based stats.
Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 15/230 (6%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNF--PVG----ALYGTIKMLRKLYKNYRATYIA 55
++ LLL+DGSS +RAF+AL + ID F P G A++ ML L + T++
Sbjct: 4 KDRLLLIDGSSVAFRAFFALYN--QIDRFKAPNGLHTNAIFAFHTMLSSLMERIEPTHVL 61
Query: 56 CIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIG 115
FDA FR ++ YK R K P Q+ I +M++ +G + EADD+IG
Sbjct: 62 IAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEADDIIG 121
Query: 116 TLAKQAVTKH-NLKVIISTNDKDMAQLVS-NKIALINNNKIHDRTT-----IISRFGVSP 168
TL K A + N V I T DKDM QLV N I+ + + ++ + G++P
Sbjct: 122 TLDKMAEAPNVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEKMGLTP 181
Query: 169 EKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKG 218
+ +D +L+GD SDN PGV K+G KT +KLL ++ SLEN+ N +++K
Sbjct: 182 AQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVDSLKA 231
>sp|Q9PQ75|EX53_UREPA 5'-3' exonuclease OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=polA PE=3 SV=1
Length = 289
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 151/285 (52%), Gaps = 16/285 (5%)
Query: 6 LLVDGSSCIYRAFYALPDIRNI----DNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+++DG+S IYRAF+A P A+ M+ K+ + TY DA
Sbjct: 5 IVIDGNSLIYRAFHATYKQAEWAVEKQLMPTNAIKLVASMIFKILNQEQFTYGLIAMDAS 64
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
+ FR Y +YKATRK M LI+Q+ + ++ A+G+ I+ G+EADD +G+ +
Sbjct: 65 KQTFRAQEYAAYKATRKPMDAKLIVQLPYLKKLFVAMGFRIISQPGIEADDFVGSFS-NL 123
Query: 122 VTKHNLKVIISTNDKDMAQLVS--NKIALINNNKIHDRTTIISRF-----GVSPEKIVDY 174
+ K ++ I ++D+DM QL++ K+ L+ + ++ F G+ P +I++Y
Sbjct: 124 MNKFDVDTTIYSSDRDMLQLINKNTKLKLLKTGTSVMQEINLTNFSLLNNGILPYQIIEY 183
Query: 175 FSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKL 234
L+GD SDNL GVK IGPKTA+ LL +Y+++ENI N I + L +
Sbjct: 184 KGLVGDSSDNLIGVKGIGPKTAINLLLKYDNIENIYTNLEKIAPSVKNKLIEHKDMAFLS 243
Query: 235 KKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
KK+ I+TD + + E+ +L+P + + L +LF K+N +
Sbjct: 244 KKLAAIQTDLLFDEKL----ENFVLKPYNTQELDELFTSLKINNM 284
>sp|Q55971|DPO1_SYNY3 DNA polymerase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=polA PE=3 SV=1
Length = 986
Score = 128 bits (322), Expect = 5e-29, Method: Composition-based stats.
Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 18/237 (7%)
Query: 5 LLLVDGSSCIYRAFYALP-----DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
LLLVDG S +RA+YA +R P +G + L ++ ++ + IA FD
Sbjct: 10 LLLVDGHSLAFRAYYAFGLSKKGPLRTTAGIPTSVCFGFLNSLMQVMESQKPAAIAIAFD 69
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
+ FR+ +YK+ R++ P + ++ + Q+++A+ + G EADD++GTLA
Sbjct: 70 RREPTFRHEADGAYKSNRQETPEDFAEDLSYLQQLLEALNLQTITYAGYEADDILGTLAC 129
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNK----IALINNNKIHDRTT--------IISRFGVS 167
Q + +V I + D+D+ QLVS + + + N T ++ + GV+
Sbjct: 130 QG-SDAGYQVKILSGDRDLFQLVSPEKNISVLYLTRNPFSSNTGYDELDWQGVVDKMGVT 188
Query: 168 PEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNL 224
P +IVD+ +L GD SD +PG+ IG KTA+KLL +Y +LE + N IKG + L
Sbjct: 189 PAQIVDFKALCGDKSDCIPGINGIGEKTAIKLLAEYETLEKVYENLAQIKGALKTRL 245
>sp|Q9ZJE9|DPO1_HELPJ DNA polymerase I OS=Helicobacter pylori (strain J99) GN=polA PE=3
SV=1
Length = 897
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 8/231 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDN---FPVGALYGTIKMLRKLYKNYR-ATYIACI 57
+ TL L+D + ++R++Y + + N FP G L G + M++K YK+ + +I
Sbjct: 8 EGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPFIVFA 67
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
+++ K R YK RK P ++LQI + + ++ +G+ + + G EADDVI +L
Sbjct: 68 LESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVGGFEADDVIASL 127
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTTIISRFGVSPEKIVDYFSL 177
A T K I + DKD QL+S+KIAL + + ++G+ P + DY +
Sbjct: 128 A----TLSPYKTRIYSKDKDFNQLLSDKIALFDGKTEFLAKDCVEKYGILPSQFTDYQGI 183
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL 228
+GD SDN GVK IG K A +LL + SLE I N + K ++ + AL
Sbjct: 184 VGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQAL 234
>sp|P56105|DPO1_HELPY DNA polymerase I OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=polA PE=3 SV=2
Length = 891
Score = 124 bits (310), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 8/231 (3%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDN---FPVGALYGTIKMLRKLYKNYR-ATYIACI 57
+ TL L+D + ++R++Y + + N FP G L G + M++K YK+ + +I
Sbjct: 8 EGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPFIVFA 67
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
+++ K R YK RK P ++LQI + + ++ +G+ + + G EADDVI +L
Sbjct: 68 LESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEADDVIASL 127
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTTIISRFGVSPEKIVDYFSL 177
A T K I + DKD QL+S+KIAL + + ++G+ P + DY +
Sbjct: 128 A----TLSPYKTRIYSKDKDFNQLLSDKIALFDGKTEFLAKDCVEKYGILPSQFTDYQGI 183
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFAL 228
+GD SDN GVK IG K A +LL + SLE I N + K ++ + AL
Sbjct: 184 VGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYRAL 234
>sp|P59199|DPO1_STRPN DNA polymerase I OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=polA PE=3 SV=1
Length = 877
Score = 123 bits (308), Expect = 2e-27, Method: Composition-based stats.
Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 11/226 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYAL----PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACI 57
+ LLL+DGSS +RAF+AL +N+ A+YG ML L + ++I
Sbjct: 3 KKKLLLIDGSSVAFRAFFALYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVEPSHILVA 62
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDA FR +Y YK R K P Q I +++ +G + EADD+IGTL
Sbjct: 63 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDIIGTL 122
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLV-SNKIALINNNKIHDRTT-----IISRFGVSPEKI 171
K A + + I + DKD+ QL + + I+ + + ++ G++P +
Sbjct: 123 DKLA-EQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQF 181
Query: 172 VDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIK 217
+D +L+GD SDN+PGV K+G KT +KLL ++ SLE I N + +K
Sbjct: 182 IDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMK 227
>sp|P59200|DPO1_STRR6 DNA polymerase I OS=Streptococcus pneumoniae (strain ATCC BAA-255 /
R6) GN=polA PE=3 SV=1
Length = 877
Score = 121 bits (304), Expect = 5e-27, Method: Composition-based stats.
Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 11/226 (4%)
Query: 2 QNTLLLVDGSSCIYRAFYAL----PDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACI 57
+ LLL+DGSS +RAF+AL +N A+YG ML L + ++I
Sbjct: 3 KKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVEPSHILVA 62
Query: 58 FDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
FDA FR +Y YK R K P Q I +++ +G + EADD+IGTL
Sbjct: 63 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGTL 122
Query: 118 AKQAVTKHNLKVIISTNDKDMAQLV-SNKIALINNNKIHDRTT-----IISRFGVSPEKI 171
K A + + I + DKD+ QL + + I+ + + ++ G++P +
Sbjct: 123 DKLA-EQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQF 181
Query: 172 VDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIK 217
+D +L+GD SDN+PGV K+G KT +KLL ++ SLE I N + +K
Sbjct: 182 IDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMK 227
>sp|O51498|DPO1_BORBU DNA polymerase I OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=polA PE=3 SV=1
Length = 908
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 117/214 (54%), Gaps = 7/214 (3%)
Query: 5 LLLVDGSSCIYRAFYALPD--IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
L L+D + I+R ++ + + + N V A G K L + K ++ FD++
Sbjct: 4 LYLIDALNIIFRNYHVMKNYPLLNTQGENVNAFIGFFKTLFFIIKEKNPEHLIITFDSEV 63
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
FR YPSYKATR P +LI QI I + + PI ++G EADD++ + AK+A
Sbjct: 64 PTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLASFAKKAA 123
Query: 123 TKHNLKVIISTNDKDMAQLVSN--KIALINNNKI--HDRTTIISRFGVSPEKIVDYFSLI 178
+ L IIS DKD+ Q +S KI I NN D + +FGV+ +I DY +++
Sbjct: 124 KNNYLTYIISP-DKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIKDYLAIV 182
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINN 212
GD SDN+PG+K IG K A LL ++ +L+ I +N
Sbjct: 183 GDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSN 216
>sp|Q9RJ79|EX53_STRCO 5'-3' exonuclease OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=SCO1622 PE=3 SV=1
Length = 301
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 140/297 (47%), Gaps = 33/297 (11%)
Query: 6 LLVDGSSCIYRAFYALPD-IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK- 63
+L+D +S +RA++ +PD ++ D PV A+ G + + +L K++R ++ DA +
Sbjct: 1 MLLDTASLYFRAYFGVPDSVKAPDGTPVNAVRGLLDFIDRLVKDHRPEHLVACMDADWRP 60
Query: 64 NFRNILYPSYKATR-----------KKMPYNLILQINLIHQMVKAIGWPILIIKGVEADD 112
++R L PSYKA R +++P L Q+ +I ++ A+G + + G EADD
Sbjct: 61 HWRVELIPSYKAHRVAEERPAGPDAEEVPDTLSPQVPVIEAVLDALGIARVGVAGYEADD 120
Query: 113 VIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIAL--------INNNKIHDRTTIISRF 164
VIGT +A V I T D+D+ QLV + + + + D + ++
Sbjct: 121 VIGTYTARATGP----VDIVTGDRDLYQLVDDARGVRVLYPVKGVGTLNLVDEAALREKY 176
Query: 165 GVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIG--- 221
GV D L GD SD LPGV IG KTA KLL ++ L I ++ K +
Sbjct: 177 GVDGAGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIQAAVDDPKARLTPTQ 236
Query: 222 -KNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLN 277
K L A +L K++ + D L ++P P+D L L ++ L
Sbjct: 237 RKRLTEAGPYLAVAPKVVRVAADVPLPDTGTALPHG----PRDAAALEALAARWGLG 289
>sp|Q10699|EX53_MYCTU 5'-3' exonuclease OS=Mycobacterium tuberculosis GN=Rv2090 PE=3 SV=2
Length = 318
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 136/278 (48%), Gaps = 34/278 (12%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPD-IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
M++ L+L+DG+S +R+F+ +P I D PV A+ G I + + R +A D
Sbjct: 1 MRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 60
Query: 60 AKGK-NFRNILYPSYKATR------------KKMPYNLILQINLIHQMVKAIGWPILIIK 106
+ FR L PSYKA R +++P L Q+++I +++ A G +
Sbjct: 61 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 120
Query: 107 GVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN---------NNKIHDR 157
G EADDV+GTLA + + VI+ + D+D+ Q+V++ + +
Sbjct: 121 GFEADDVLGTLATR---ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 177
Query: 158 TTIISRFGVSPEKIVDYFS----LIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNA 213
+ R+G+ + ++ L GD SD LPGV +G KTA LL ++ SL+ I+ A
Sbjct: 178 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 237
Query: 214 NNIKGVIGKNLR----FALNWLPKLKKILTIKTDCDLT 247
++ K + K LR A ++ +++ + TD +T
Sbjct: 238 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVT 275
>sp|Q12L39|XNI_SHEDO Protein Xni OS=Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013) GN=xni PE=3 SV=1
Length = 252
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 115/216 (53%), Gaps = 8/216 (3%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
NTLL++DG + + R A PD +I+N L KML K ++ +++ ++D
Sbjct: 2 NTLLIIDGLNLVRRIHAAQPDENDINNVQQMTLLACTKML----KTHQPSHVIVVWDGDE 57
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
+++R LY YK RK MP L + + I + G L + EADDVI TLA + V
Sbjct: 58 ESWRKKLYSDYKKGRKPMPEALKIALVGIRNTLSEAGIHSLEAES-EADDVIATLATKMV 116
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISRFGVSPEKIVDYFSLIGD 180
+I+ST DK +QLV I + ++ K D + + V + +D+ +L GD
Sbjct: 117 ENSGAAIIVST-DKGFSQLVKKNIQIWDHFKQLFLDISAHEKKLAVEQYQFLDFIALAGD 175
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
+ +PG+ IGPK+A LLN++ +L NI N+ +N+
Sbjct: 176 SGNKIPGIAGIGPKSAADLLNKFRTLANIYNSLDNL 211
>sp|A7MR03|XNI_CROS8 Protein Xni OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=xni
PE=3 SV=1
Length = 251
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 123/254 (48%), Gaps = 14/254 (5%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD- 59
M LL+VD + I R +A+ +D + L +L N + T+ +FD
Sbjct: 1 MPVHLLIVDALNLIRR-IHAVQGTPCVDT--------CLHALEQLIGNSQPTHAVAVFDD 51
Query: 60 -AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLA 118
A+ + +R+ L P YKA R MP +L ++ + G P ++G EADD+ TLA
Sbjct: 52 EARAQGWRHQLLPDYKAGRPPMPDDLHQEMPALRDAFTRRGVPCWHVEGNEADDLAATLA 111
Query: 119 KQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFS 176
+ + I+ST DK QL+ +I + + + D I S FGVSP ++ D++
Sbjct: 112 VKVAAAGHEATIVST-DKGYCQLLRPEIRIRDYFQKRWLDAPFIESEFGVSPGQLADFWG 170
Query: 177 LIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK 236
L G S +PGV IGPK+A +L+N + +LE + +++ K L +
Sbjct: 171 LAGISSSKIPGVPGIGPKSATQLINDFGTLEALYERLDDVPDKWRKKLEAHRESAFVCRA 230
Query: 237 ILTIKTDCDLTKNI 250
+ T+KTD L N+
Sbjct: 231 VATLKTDLQLDGNL 244
>sp|A8GIF8|XNI_SERP5 Protein Xni OS=Serratia proteamaculans (strain 568) GN=xni PE=3
SV=1
Length = 251
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 15/218 (6%)
Query: 42 LRKLYKNYRATYIACIFDA--KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIG 99
L++L ++ R T+ +FD + +++R+ + P YKA R MP NL ++ + Q +++G
Sbjct: 33 LQQLIQHSRPTHAVAVFDEDDRSESWRHQILPDYKAGRSPMPDNLQQEMPQLRQAFESLG 92
Query: 100 WPILIIKGVEADDVIGTL-AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHD 156
G EADD+ TL AK A H +V I + DK QL++ + + + + D
Sbjct: 93 VACWHSPGNEADDLAATLTAKVAGGGH--QVTIVSTDKGYCQLLAPSVQIRDYFQKRWLD 150
Query: 157 RTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216
+ FGVSP+++ DY+ L G S +PGV IGPKTAV LL Q SL+ + + +
Sbjct: 151 MPFVQQEFGVSPQQLSDYWGLAGISSSKIPGVAGIGPKTAVLLLQQAGSLDGLYQDLEQV 210
Query: 217 ----KGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNI 250
+G + ++ A K++ T++TD LT N+
Sbjct: 211 PEKWRGKLEQHREMAY----VSKRVATLRTDLALTGNL 244
>sp|Q8DFB4|XNI_VIBVU Protein Xni OS=Vibrio vulnificus (strain CMCP6) GN=xni PE=3 SV=1
Length = 259
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 16/253 (6%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG-- 62
L+++D + I R A PD +I N + T + L+++ T+I +FD G
Sbjct: 5 LVIIDALNLIRRVHSAQPDPTDIAN----TIQNTRRTLQRIISESHPTHIVAVFDHLGSD 60
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
+ +R + P YK RK MP L+ + I + +G L+ +G EADD++ TLA + V
Sbjct: 61 RGWRAEILPEYKQGRKPMPEPLLNGLEKIQEAWWQLGIDSLLSEGDEADDLVATLACK-V 119
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H KV I + DK QL+S + + + ++ D+ I FGV P+++ DY+ L G
Sbjct: 120 AQHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDQPFIEQEFGVKPQQLSDYWGLTGI 179
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNAN---NIKGVIGKNLRFALNWLPKLKKI 237
S + G+ IGPK A ++L+Q++ +E + + + +++ A + K++
Sbjct: 180 SSSQVTGIPGIGPKAAKEILSQFDDIEQAFLSPDLPKKYRTKFDQHIELAR----RCKRV 235
Query: 238 LTIKTDCDLTKNI 250
+KTD +L N+
Sbjct: 236 SALKTDIELGFNL 248
>sp|Q7MN34|XNI_VIBVY Protein Xni OS=Vibrio vulnificus (strain YJ016) GN=xni PE=3 SV=1
Length = 259
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 129/253 (50%), Gaps = 16/253 (6%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG-- 62
L+++D + I R A PD +I N + T + L+++ T+I +FD G
Sbjct: 5 LVIIDALNLIRRVHSAQPDPTDIAN----TIQNTCRTLQRIISESHPTHIVAVFDHLGSD 60
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
+ +R + P YK RK MP L+ + I +G L+ +G EADD++ TLA + V
Sbjct: 61 RGWRAEILPEYKQGRKPMPEPLLNGLEKIQDAWWQLGIDSLLSEGDEADDLVATLACK-V 119
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+H KV I + DK QL+S + + + ++ D+ I FGV P+++ DY+ L G
Sbjct: 120 AQHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDQPFIEQEFGVKPQQLSDYWGLTGI 179
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNAN---NIKGVIGKNLRFALNWLPKLKKI 237
S + G+ IGPK A ++L+Q++ +E + + + +++ A + K++
Sbjct: 180 SSSQVTGIPGIGPKAAKEILSQFDDIEQAFLSPDLPKKYRTKFDQHIELAR----RCKRV 235
Query: 238 LTIKTDCDLTKNI 250
+KTD +L N+
Sbjct: 236 SALKTDIELGFNL 248
>sp|A4SQK3|XNI_AERS4 Protein Xni OS=Aeromonas salmonicida (strain A449) GN=xni PE=3 SV=1
Length = 265
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 31 PVGALYGT----IKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLIL 86
P AL T I RKL T++ +FD + ++R +YP+YK R MP L
Sbjct: 27 PAQALIATRANLINTCRKLLTGSEPTHVIAVFDGEIHSWRKEVYPAYKEGRTPMPVELRE 86
Query: 87 QINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKI 146
+N + G L+ + EADD+I TLA + +H + I + DK QL+ +I
Sbjct: 87 GLNTLQDAFWECGVDALLSQTDEADDLIATLAS-GIAQHGARATIISTDKGFCQLICPQI 145
Query: 147 ALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYN 204
+ + N + D + ++GV P ++VD+++L G N+ GV IGPKTA +LL QY
Sbjct: 146 QIRDYFNKRWLDAAFVEQQYGVVPAQLVDFWALTGISGSNIKGVPGIGPKTATQLLQQYG 205
Query: 205 SLENII 210
SL ++
Sbjct: 206 SLSALL 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,333,658
Number of Sequences: 539616
Number of extensions: 4009208
Number of successful extensions: 12240
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 11745
Number of HSP's gapped (non-prelim): 335
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)