Query psy14489
Match_columns 284
No_of_seqs 142 out of 1188
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 21:06:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1exn_A 5'-exonuclease, 5'-nucl 100.0 3.7E-70 1.3E-74 498.8 12.6 243 4-259 20-276 (290)
2 1bgx_T TAQ DNA polymerase; DNA 100.0 8.5E-67 2.9E-71 535.3 -0.2 274 2-283 11-285 (832)
3 3h7i_A Ribonuclease H, RNAse H 100.0 7.9E-60 2.7E-64 428.7 7.7 262 2-283 12-302 (305)
4 2izo_A FEN1, flap structure-sp 100.0 1.9E-55 6.4E-60 412.7 18.7 250 3-277 18-315 (346)
5 3q8k_A Flap endonuclease 1; he 100.0 2E-54 6.8E-59 404.5 19.1 255 3-278 27-317 (341)
6 1rxw_A Flap structure-specific 100.0 7.6E-54 2.6E-58 400.3 16.8 248 2-278 20-312 (336)
7 1a76_A Flap endonuclease-1 pro 100.0 2.3E-52 7.7E-57 388.9 19.9 242 3-278 21-298 (326)
8 1ul1_X Flap endonuclease-1; pr 100.0 1.2E-51 4E-56 391.1 15.3 253 3-277 27-316 (379)
9 1b43_A Protein (FEN-1); nuclea 100.0 2.5E-50 8.6E-55 377.0 18.6 245 3-278 21-312 (340)
10 3ory_A Flap endonuclease 1; hy 100.0 7.8E-51 2.7E-55 382.8 13.8 249 3-278 35-330 (363)
11 3qe9_Y Exonuclease 1; exonucle 100.0 4.1E-39 1.4E-43 302.1 15.1 220 3-232 24-279 (352)
12 2a1j_A DNA repair endonuclease 97.0 0.00036 1.2E-08 48.7 2.4 27 186-212 7-33 (63)
13 1kft_A UVRC, excinuclease ABC 96.6 0.00099 3.4E-08 48.2 2.4 29 184-212 25-53 (78)
14 1z00_B DNA repair endonuclease 96.6 0.0013 4.4E-08 48.6 3.0 26 187-212 22-47 (84)
15 1x2i_A HEF helicase/nuclease; 96.4 0.0019 6.6E-08 45.7 2.9 27 186-212 17-43 (75)
16 2y35_A LD22664P; hydrolase-DNA 96.4 0.032 1.1E-06 59.0 13.1 187 5-194 31-299 (1140)
17 1z00_A DNA excision repair pro 96.2 0.0023 8E-08 47.3 2.8 27 186-212 22-48 (89)
18 2a1j_B DNA excision repair pro 96.0 0.0026 8.8E-08 47.4 2.1 27 186-212 35-61 (91)
19 2bgw_A XPF endonuclease; hydro 95.9 0.0026 8.8E-08 54.9 1.8 114 84-212 68-191 (219)
20 2nrt_A Uvrabc system protein C 95.6 0.0052 1.8E-07 53.3 2.4 27 186-212 171-197 (220)
21 3pie_A 5'->3' exoribonuclease 95.3 0.35 1.2E-05 51.0 15.6 186 5-194 31-302 (1155)
22 3fqd_A Protein DHP1, 5'-3' exo 95.2 0.61 2.1E-05 47.9 16.6 143 5-150 54-257 (899)
23 3c65_A Uvrabc system protein C 94.2 0.0082 2.8E-07 52.3 0.0 29 184-212 174-202 (226)
24 1ixr_A Holliday junction DNA h 93.2 0.057 2E-06 45.8 3.5 23 188-210 77-102 (191)
25 3v32_B Ribonuclease ZC3H12A; r 92.9 0.97 3.3E-05 38.0 10.6 101 4-136 25-134 (185)
26 2qip_A Protein of unknown func 92.3 0.52 1.8E-05 38.4 8.1 52 91-143 66-126 (165)
27 1cuk_A RUVA protein; DNA repai 92.0 0.1 3.5E-06 44.6 3.5 24 188-211 78-104 (203)
28 4gfj_A Topoisomerase V; helix- 91.8 0.08 2.7E-06 50.0 2.8 27 187-213 472-498 (685)
29 1s5l_U Photosystem II 12 kDa e 90.3 0.094 3.2E-06 41.8 1.5 45 187-232 67-113 (134)
30 3v33_A Ribonuclease ZC3H12A; r 89.5 1.8 6.1E-05 37.4 9.0 101 4-136 25-134 (223)
31 2owo_A DNA ligase; protein-DNA 88.3 0.26 8.8E-06 49.4 3.3 42 187-228 516-564 (671)
32 1vq8_Y 50S ribosomal protein L 87.8 0.11 3.7E-06 45.6 0.2 27 184-210 16-43 (241)
33 1dgs_A DNA ligase; AMP complex 86.6 0.42 1.4E-05 47.9 3.7 26 187-212 511-536 (667)
34 3c1y_A DNA integrity scanning 85.5 0.39 1.3E-05 44.7 2.6 26 188-213 320-345 (377)
35 3sgi_A DNA ligase; HET: DNA AM 85.0 0.17 6E-06 50.1 0.0 27 186-212 532-558 (615)
36 2w9m_A Polymerase X; SAXS, DNA 84.3 0.71 2.4E-05 45.3 4.0 28 186-213 100-128 (578)
37 2fmp_A DNA polymerase beta; nu 83.9 0.62 2.1E-05 42.6 3.2 27 185-212 100-128 (335)
38 2i5h_A Hypothetical protein AF 80.7 1 3.5E-05 38.3 3.1 47 168-214 114-168 (205)
39 2ihm_A POL MU, DNA polymerase 80.6 0.84 2.9E-05 42.2 2.8 25 186-211 105-131 (360)
40 2ztd_A Holliday junction ATP-d 80.5 0.7 2.4E-05 39.6 2.1 18 188-205 93-110 (212)
41 4glx_A DNA ligase; inhibitor, 79.6 1.2 4.1E-05 43.9 3.6 26 187-212 516-541 (586)
42 3arc_U Photosystem II 12 kDa e 79.6 0.73 2.5E-05 34.6 1.6 25 185-209 28-54 (97)
43 2bcq_A DNA polymerase lambda; 79.4 1.1 3.9E-05 40.9 3.2 28 186-213 99-127 (335)
44 3b0x_A DNA polymerase beta fam 77.5 1.4 4.8E-05 43.1 3.4 27 187-213 97-125 (575)
45 3maj_A DNA processing chain A; 77.1 1.5 5E-05 41.0 3.3 40 169-216 20-59 (382)
46 1jms_A Terminal deoxynucleotid 75.6 1.6 5.4E-05 40.7 3.1 24 187-211 125-150 (381)
47 3eef_A N-carbamoylsarcosine am 73.5 13 0.00044 30.3 7.9 43 90-133 100-142 (182)
48 2duy_A Competence protein come 73.3 1.5 5.3E-05 30.6 1.8 18 186-203 30-47 (75)
49 2edu_A Kinesin-like protein KI 69.5 1.5 5.2E-05 32.5 1.1 19 185-203 42-60 (98)
50 2ziu_A MUS81 protein; helix-ha 68.2 3.2 0.00011 37.1 3.2 30 187-216 241-270 (311)
51 2ztd_A Holliday junction ATP-d 62.5 3.2 0.00011 35.5 1.9 29 176-205 117-145 (212)
52 1ixr_A Holliday junction DNA h 62.1 3.1 0.00011 34.9 1.7 24 181-204 105-128 (191)
53 3vdp_A Recombination protein R 61.8 3.3 0.00011 35.3 1.9 17 185-201 28-44 (212)
54 2bgw_A XPF endonuclease; hydro 61.5 3.7 0.00013 34.7 2.1 69 38-121 68-137 (219)
55 1vdd_A Recombination protein R 51.4 5.1 0.00017 34.6 1.3 17 185-201 14-30 (228)
56 3hu5_A Isochorismatase family 51.2 15 0.0005 30.6 4.2 43 90-133 116-158 (204)
57 1im5_A 180AA long hypothetical 50.9 15 0.00052 29.6 4.2 43 90-133 110-152 (180)
58 1j2r_A Hypothetical isochorism 49.5 17 0.00059 29.8 4.4 43 90-133 122-164 (199)
59 1cuk_A RUVA protein; DNA repai 49.0 6.7 0.00023 33.1 1.7 27 177-203 102-128 (203)
60 3hb7_A Isochorismatase hydrola 48.8 18 0.00061 30.0 4.4 43 90-133 110-152 (204)
61 3irv_A Cysteine hydrolase; str 48.8 16 0.00056 31.0 4.2 43 90-133 129-171 (233)
62 3b0x_A DNA polymerase beta fam 48.8 9.5 0.00033 37.1 3.0 24 185-208 130-153 (575)
63 3n0u_A Probable N-glycosylase/ 48.0 7.5 0.00026 33.2 1.9 19 187-205 134-152 (219)
64 1nf9_A Phenazine biosynthesis 47.9 19 0.00064 29.8 4.4 43 90-133 132-174 (207)
65 2zix_A Crossover junction endo 46.9 3.7 0.00013 36.7 -0.2 32 185-216 235-266 (307)
66 1dgs_A DNA ligase; AMP complex 46.7 18 0.00063 36.0 4.7 27 187-213 445-473 (667)
67 3fhf_A Mjogg, N-glycosylase/DN 46.5 8.4 0.00029 32.8 1.9 19 187-205 129-147 (214)
68 3txy_A Isochorismatase family 46.0 20 0.00068 29.6 4.2 43 90-133 116-158 (199)
69 2csb_A Topoisomerase V, TOP61; 45.8 17 0.00057 32.4 3.7 78 189-280 417-494 (519)
70 3fhg_A Mjogg, N-glycosylase/DN 45.4 8.9 0.0003 32.2 1.9 20 186-205 120-139 (207)
71 3mcw_A Putative hydrolase; iso 44.9 18 0.00063 29.8 3.8 43 90-133 103-145 (198)
72 4h17_A Hydrolase, isochorismat 44.8 19 0.00064 29.8 3.8 43 90-133 113-155 (197)
73 3tg2_A Vibriobactin-specific i 44.8 19 0.00066 30.5 4.0 43 90-133 128-170 (223)
74 3gbc_A Pyrazinamidase/nicotina 44.7 23 0.00079 28.9 4.4 43 90-133 115-157 (186)
75 1kft_A UVRC, excinuclease ABC 44.6 5.4 0.00018 27.9 0.3 23 181-203 54-76 (78)
76 3ugs_B Undecaprenyl pyrophosph 44.0 20 0.00067 30.8 3.9 66 50-121 6-82 (225)
77 3zvk_A VAPC2, toxin of toxin-a 43.7 20 0.0007 26.9 3.7 30 109-144 97-127 (134)
78 3oqp_A Putative isochorismatas 43.3 22 0.00074 29.9 4.0 43 90-133 99-141 (211)
79 2a67_A Isochorismatase family 42.9 18 0.00061 28.9 3.3 43 90-133 91-133 (167)
80 3o94_A Nicotinamidase; hydrola 42.9 23 0.0008 29.7 4.2 43 90-133 133-175 (211)
81 3ib6_A Uncharacterized protein 42.7 18 0.00061 28.9 3.4 35 157-195 103-138 (189)
82 3lqy_A Putative isochorismatas 42.3 20 0.0007 29.2 3.7 43 90-133 103-145 (190)
83 1pu6_A 3-methyladenine DNA gly 41.4 9.7 0.00033 32.3 1.5 18 185-202 123-140 (218)
84 2wt9_A Nicotinamidase; hydrola 41.3 27 0.00091 29.6 4.4 42 91-133 158-199 (235)
85 3kl2_A Putative isochorismatas 40.2 23 0.0008 29.9 3.8 43 90-133 141-183 (226)
86 3r2j_A Alpha/beta-hydrolase-li 38.8 30 0.001 29.4 4.2 43 90-133 147-189 (227)
87 3ot4_A Putative isochorismatas 38.7 26 0.00087 30.0 3.8 43 90-133 149-191 (236)
88 1nba_A N-carbamoylsarcosine am 38.4 26 0.00089 30.5 3.9 43 90-133 154-196 (264)
89 2fq1_A Isochorismatase; ENTB, 38.2 31 0.001 30.1 4.4 43 90-133 135-177 (287)
90 1kea_A Possible G-T mismatches 38.1 12 0.0004 31.8 1.5 17 186-202 118-134 (221)
91 2h56_A DNA-3-methyladenine gly 37.9 12 0.0004 32.1 1.5 19 187-205 142-161 (233)
92 1yac_A Ycacgp, YCAC gene produ 37.2 20 0.0007 29.8 2.9 43 90-133 95-137 (208)
93 3v8e_A Nicotinamidase; hydrola 37.0 35 0.0012 28.6 4.4 43 90-133 144-186 (216)
94 3tnd_A TRNA(FMet)-specific end 36.5 26 0.0009 26.2 3.2 32 109-146 96-128 (132)
95 1kg2_A A/G-specific adenine gl 36.4 13 0.00044 31.6 1.5 16 186-201 112-127 (225)
96 4h8e_A Undecaprenyl pyrophosph 36.4 24 0.00081 30.9 3.2 82 50-138 24-122 (256)
97 2abk_A Endonuclease III; DNA-r 36.1 13 0.00045 31.1 1.5 16 187-202 113-128 (211)
98 4e9f_A Methyl-CPG-binding doma 35.1 15 0.0005 29.8 1.6 23 179-201 100-122 (161)
99 1v96_A Hypothetical protein PH 34.8 19 0.00066 27.6 2.2 44 109-164 96-140 (149)
100 1orn_A Endonuclease III; DNA r 33.3 16 0.00053 31.2 1.5 17 185-201 115-131 (226)
101 2yg9_A DNA-3-methyladenine gly 32.9 16 0.00054 31.1 1.5 16 186-201 149-164 (225)
102 2zg6_A Putative uncharacterize 32.6 70 0.0024 25.6 5.5 33 157-196 156-189 (220)
103 3s6i_A DNA-3-methyladenine gly 32.6 16 0.00055 31.2 1.5 22 185-206 141-163 (228)
104 4b21_A Probable DNA-3-methylad 32.5 16 0.00056 31.3 1.5 21 185-205 152-173 (232)
105 1ci4_A Protein (barrier-TO-aut 32.4 20 0.00067 26.3 1.7 23 178-202 15-37 (89)
106 3i0w_A 8-oxoguanine-DNA-glycos 31.0 18 0.0006 32.1 1.5 21 185-205 213-234 (290)
107 1b0a_A Protein (fold bifunctio 30.7 15 0.00053 32.7 1.1 75 125-202 182-274 (288)
108 1yzv_A Hypothetical protein; s 30.5 22 0.00074 29.7 2.0 43 90-133 100-142 (204)
109 3kbb_A Phosphorylated carbohyd 30.5 15 0.0005 29.5 0.9 36 157-196 146-181 (216)
110 1a4i_A Methylenetetrahydrofola 29.6 16 0.00054 32.8 1.0 107 91-202 152-286 (301)
111 2dla_A 397AA long hypothetical 29.1 28 0.00094 29.2 2.3 22 194-215 10-31 (222)
112 3ngx_A Bifunctional protein fo 29.1 16 0.00053 32.5 0.8 74 125-202 173-264 (276)
113 1mpg_A ALKA, 3-methyladenine D 29.0 20 0.00069 31.4 1.5 21 185-205 209-230 (282)
114 2jhn_A ALKA, 3-methyladenine D 28.7 20 0.00069 31.7 1.5 19 186-204 213-232 (295)
115 4a26_A Putative C-1-tetrahydro 28.2 18 0.00062 32.4 1.1 76 125-202 188-288 (300)
116 2gmw_A D,D-heptose 1,7-bisphos 27.9 36 0.0012 27.7 2.9 34 156-193 136-169 (211)
117 1vq8_Y 50S ribosomal protein L 27.7 13 0.00043 32.3 0.0 34 173-206 38-71 (241)
118 3c1y_A DNA integrity scanning 27.6 21 0.00073 33.0 1.5 38 156-200 327-364 (377)
119 3l07_A Bifunctional protein fo 27.3 19 0.00065 32.0 1.1 102 91-202 148-275 (285)
120 3n5n_X A/G-specific adenine DN 25.8 25 0.00084 31.3 1.5 14 188-201 134-147 (287)
121 2h1c_A Trafficking protein B; 25.8 28 0.00094 25.9 1.6 27 109-141 102-129 (139)
122 2kp7_A Crossover junction endo 25.7 25 0.00087 25.4 1.3 14 186-199 61-74 (87)
123 3r8n_M 30S ribosomal protein S 25.4 32 0.0011 26.3 1.9 18 187-204 20-37 (114)
124 1x9g_A Putative MAR1; structur 24.5 45 0.0015 27.6 2.9 41 90-133 99-139 (200)
125 3qas_B Undecaprenyl pyrophosph 24.1 50 0.0017 28.7 3.2 50 52-107 19-69 (253)
126 2xhi_A N-glycosylase/DNA lyase 23.8 28 0.00095 31.9 1.5 20 186-205 256-276 (360)
127 1w8i_A Putative VAPC ribonucle 23.3 54 0.0019 25.4 3.0 26 109-140 101-126 (156)
128 3p2o_A Bifunctional protein fo 23.0 23 0.0008 31.5 0.8 74 125-202 183-275 (285)
129 3sgv_B Undecaprenyl pyrophosph 22.7 22 0.00076 31.1 0.6 64 50-119 17-91 (253)
130 3dbo_B Uncharacterized protein 22.5 72 0.0025 24.9 3.6 44 89-143 98-141 (150)
131 4a5o_A Bifunctional protein fo 22.0 26 0.0009 31.1 0.9 106 90-202 147-276 (286)
132 2c2x_A Methylenetetrahydrofola 21.7 23 0.00078 31.5 0.5 73 126-202 184-273 (281)
133 3fsp_A A/G-specific adenine gl 21.5 33 0.0011 31.2 1.5 17 186-202 121-137 (369)
134 3u5c_S 40S ribosomal protein S 21.3 33 0.0011 27.4 1.3 17 188-204 35-51 (146)
135 1wcn_A Transcription elongatio 21.2 58 0.002 22.3 2.4 30 183-212 7-37 (70)
136 1o4w_A PIN (PILT N-terminus) d 20.5 33 0.0011 26.6 1.2 37 106-150 97-134 (147)
137 3bqs_A Uncharacterized protein 20.5 72 0.0025 23.2 3.0 28 184-211 5-33 (93)
138 3kzs_A Glycosyl hydrolase fami 20.3 5.4E+02 0.018 24.1 10.6 62 77-139 96-171 (463)
139 2xzm_M RPS18E; ribosome, trans 20.2 40 0.0014 27.2 1.6 18 187-204 34-51 (155)
140 2vg0_A Short-chain Z-isoprenyl 20.2 26 0.00089 30.0 0.5 66 51-122 3-80 (227)
No 1
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=100.00 E-value=3.7e-70 Score=498.79 Aligned_cols=243 Identities=22% Similarity=0.299 Sum_probs=232.7
Q ss_pred cEEEEecchHHHHHhccCCCccCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCccccccCchhhhCCCCCC--
Q psy14489 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMP-- 81 (284)
Q Consensus 4 ~~llIDg~~l~~r~~~a~~~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~~i~~fD~~~~~~R~~l~~~YKa~R~~~p-- 81 (284)
+++||||++++||+|| +++|.| |++||++++.++++.++|+|+++|||+++++||+++||+||+||+++|
T Consensus 20 ~lllIDg~~llyRa~~------~~~G~p--av~Gf~~~l~~ll~~~~p~~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~ 91 (290)
T 1exn_A 20 NLMIVDGTNLGFRFKH------NNSKKP--FASSYVSTIQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQ 91 (290)
T ss_dssp EEEEEEHHHHHHHHHH------HCSSSC--CHHHHHHHHHHHHHHTTEEEEEEECCBSCCHHHHHHCTTTTHHHHHHHHT
T ss_pred CEEEEECcHHHHHHHh------CCCCch--HHHHHHHHHHHHHHHcCCCeEEEEEcCCCchhhhhCcHHHHcCCCCCCcc
Confidence 6999999999999998 467888 999999999999999999999999998889999999999999999999
Q ss_pred -----hhHHHH-HHHHHHHHHh--cCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEcCCCccccccCCCeEEEe--C
Q psy14489 82 -----YNLILQ-INLIHQMVKA--IGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--N 151 (284)
Q Consensus 82 -----~~l~~q-~~~i~~~l~~--~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S~DkDl~ql~~~~v~~~~--~ 151 (284)
++|.+| ++.++++|+. +|||++.++||||||+||+||+++.+ .|.+|+|+|+|||++||++++|++|+ +
T Consensus 92 ~~~~~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~-~G~~v~IvS~DkDl~Qlv~~~v~v~~~~~ 170 (290)
T 1exn_A 92 RTEEEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGH-LYDHVWLISTDGDWDTLLTDKVSRFSFTT 170 (290)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGG-GSSCEEEECSCGGGGGGCCSSEEEEETTT
T ss_pred ccccchhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHH-CCCcEEEEeCCCChhhcCCCCEEEEECCC
Confidence 999999 9999999999 99999999999999999999999887 78899999999999999999999998 5
Q ss_pred cEeeeHhHHHHHhCCCh-hHHHhhhhhcCCCCCCCCCCCccChhhHHHHHHhcCCHHHHHHhhhhh-hhhhhccHHHhHh
Q psy14489 152 NKIHDRTTIISRFGVSP-EKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI-KGVIGKNLRFALN 229 (284)
Q Consensus 152 ~~~~~~~~~~~~~G~~p-~q~~~~~~L~GD~sDni~Gv~giG~ktA~~LL~~~gsle~i~~~~~~~-~~~~~~~l~~~~~ 229 (284)
.+.++.+.+.++||++| +|++|+++|+||+|||||||||||||||.+||++|||+|+|+++++++ +++++++|.++++
T Consensus 171 ~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~~~~~~~~~L~~~~~ 250 (290)
T 1exn_A 171 RREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNLNASEE 250 (290)
T ss_dssp TEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCSCCCHHHHHHHTCHH
T ss_pred CEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHhccHHHHHHHHHhHH
Confidence 67899999999999999 999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred hchhhhhhhhhccccCCCCCcCCCcccccc
Q psy14489 230 WLPKLKKILTIKTDCDLTKNIVSIPESLIL 259 (284)
Q Consensus 230 ~~~l~~~L~~l~~d~~~~~~~~~~~~~l~~ 259 (284)
++++||+|++|++|+|++.+ ++++++
T Consensus 251 ~~~ls~~L~~i~~d~~~~~~----~~~l~~ 276 (290)
T 1exn_A 251 LLFRNLILVDLPTYCVDAIA----AVGQDV 276 (290)
T ss_dssp HHHHHHHHHCHHHHHHHHHH----TTCHHH
T ss_pred HHHHHHHhceeeeCCCCCCC----hhhhhh
Confidence 99999999999999998887 666654
No 2
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=8.5e-67 Score=535.28 Aligned_cols=274 Identities=34% Similarity=0.507 Sum_probs=261.7
Q ss_pred CCcEEEEecchHHHHHhccCCCccCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCccccccCchhhhCCCCCC
Q psy14489 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMP 81 (284)
Q Consensus 2 ~~~~llIDg~~l~~r~~~a~~~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~~i~~fD~~~~~~R~~l~~~YKa~R~~~p 81 (284)
.+++++|||++|+||+||+++++++++|.||++++||++++.++++.++ +++++|||+++++||++++|+||+||+++|
T Consensus 11 ~~~~llIDg~~~l~ra~~a~~~l~~~~G~~t~av~gf~~~l~~ll~~~~-~~~v~vFDg~~~tfR~~~~~~YKa~R~~~p 89 (832)
T 1bgx_T 11 KGRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDG-DAVIVVFDAKAPSFRHEAYGGYKAGRAPTP 89 (832)
T ss_dssp CTTSCCCCCSTHHHHTTSSCTTCBCSSSCBCSSSTTHHHHHHHGGGTCC-SCCCCCCCCSSSCSSSGGGGTTTSCCCCCC
T ss_pred CCCEEEEEChHHHHHHHhcCCccccCCCcEehHHHHHHHHHHHHHHHcC-CeEEEEEcCCCccccccchHHHHhccccCh
Confidence 3469999999999999999998999999999999999999999999988 999999999889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEcCCCccccccCCCeEEEe-CcEeeeHhHH
Q psy14489 82 YNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN-NNKIHDRTTI 160 (284)
Q Consensus 82 ~~l~~q~~~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S~DkDl~ql~~~~v~~~~-~~~~~~~~~~ 160 (284)
++|.+|++.++++|+.+|||++.+|||||||+||+||++..+ .|..++|+|+|||++||++++|.+++ +.+.++.+.+
T Consensus 90 e~l~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~-~G~~v~IvS~DkDllql~~~~v~~~~~~g~~~~~~~v 168 (832)
T 1bgx_T 90 EDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK-EGYEVRILTADKDLYQLLSDRIHVLHPEGYLITPAWL 168 (832)
T ss_dssp TTSTTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHH-HTCCBCCCCSSTTCCTTCCTTBCBCCSSSCCBCSTTH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHH-cCCeEEEEeCCCChhhcCcCCEEEEeCCCcEEcHHHH
Confidence 999999999999999999999999999999999999998877 78899999999999999999998887 4468999999
Q ss_pred HHHhCCChhHHHhhhhhcCCCCCCCCCCCccChhhHHHHHHhcCCHHHHHHhhhhhhhhhhccHHHhHhhchhhhhhhhh
Q psy14489 161 ISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI 240 (284)
Q Consensus 161 ~~~~G~~p~q~~~~~~L~GD~sDni~Gv~giG~ktA~~LL~~~gsle~i~~~~~~~~~~~~~~l~~~~~~~~l~~~L~~l 240 (284)
.++||++|+||+|+++|+||+|||||||||||||||.+||++|||+|+|++++++++++++++|.++.+++++|++|++|
T Consensus 169 ~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle~i~~~~~~~~~~~~~~l~~~~~~a~ls~~L~~i 248 (832)
T 1bgx_T 169 WEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLSWDLAKV 248 (832)
T ss_dssp HHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSCSSSSSCCCCCTTTSHHHHSSCSSTTSGGGSSCC
T ss_pred HHHHCcCHHHHHHHHHhcCCccccCCCCCCcCchHHHHHHHHCCCHHHHHHHHHHhChHHHHHHHHhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccccCCCCCcCCCccccccCCCCHHHHHHHHHHcCchhHHhhc
Q psy14489 241 KTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKLNFLM 283 (284)
Q Consensus 241 ~~d~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 283 (284)
++|+|++.+ ++ .|.+||.+++.+||+++||+++++++
T Consensus 249 ~~d~~~~~~----~~--~~~~~d~~~l~~~~~~~~f~~~~~~~ 285 (832)
T 1bgx_T 249 RTDLPLEVD----FA--KRREPDRERLRAFLERLEFGSLLHEF 285 (832)
T ss_dssp CSCCCCCCC----CC--CCCCCCHHHHHHHHTTTTCCSTTCCS
T ss_pred ccCCCCCCC----hh--HcCCccHHHHHHHHHHcCCHHHHHhh
Confidence 999999988 66 89999999999999999999998765
No 3
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=100.00 E-value=7.9e-60 Score=428.73 Aligned_cols=262 Identities=18% Similarity=0.149 Sum_probs=216.4
Q ss_pred CCcEEEEecchHHHHHhccCCCccCCCCcchhHHHH-HHHHHHHHHHh---cCCCEEEEEEeCC-CCccccccCchhhhC
Q psy14489 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYG-TIKMLRKLYKN---YRATYIACIFDAK-GKNFRNILYPSYKAT 76 (284)
Q Consensus 2 ~~~~llIDg~~l~~r~~~a~~~l~~~~g~~t~ai~g-f~~~l~~l~~~---~~~~~~i~~fD~~-~~~~R~~l~~~YKa~ 76 (284)
+++++|||||+++||+++ +.+.+++|.+|||+++ |++++.++++. ++|+|++||||++ +++||+++||+||+|
T Consensus 12 ~~~llLIDgssl~~ra~~--~~f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YKan 89 (305)
T 3h7i_A 12 KEGICLIDFSQIALSTAL--VNFPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKN 89 (305)
T ss_dssp SCCEEEEEHHHHHHHHHH--HHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTTHH
T ss_pred CCCEEEEeccHHHHHHHH--HhcCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhccC
Confidence 347999999999999976 4478889999999987 99999999999 8999999999986 689999999999999
Q ss_pred CCCCChhHHHHH--------HHHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEcCCCccccccC-CCeE
Q psy14489 77 RKKMPYNLILQI--------NLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVS-NKIA 147 (284)
Q Consensus 77 R~~~p~~l~~q~--------~~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S~DkDl~ql~~-~~v~ 147 (284)
|+++|++|..|+ +.++++++++||+++..+||||||+|||||+++.+ .|.+|+|+|+|||++||++ ++|+
T Consensus 90 R~~~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~-~g~~V~IvSgDKDl~QLv~~~~V~ 168 (305)
T 3h7i_A 90 RGKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSL-EGHKILIISSDGDFTQLHKYPNVK 168 (305)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHH-TTCCEEEECSSCCCGGGGGSSSEE
T ss_pred CCCCCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHH-CCCcEEEEeCCCCccccccCCCeE
Confidence 999999987766 78999999999999999999999999999999988 8999999999999999999 8999
Q ss_pred EEeCcEeeeHhHHHHHhCCChhHHHhhhhhcCCCCCCCCCCCccChh------------hHHHHHHhcCCHHHHHHhhhh
Q psy14489 148 LINNNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPK------------TAVKLLNQYNSLENIINNANN 215 (284)
Q Consensus 148 ~~~~~~~~~~~~~~~~~G~~p~q~~~~~~L~GD~sDni~Gv~giG~k------------tA~~LL~~~gsle~i~~~~~~ 215 (284)
+|+ .++.+.|.++||+ |+|++|+++|+||+|||||||||||++ ++.++|. .|+... +
T Consensus 169 ~~~---~~~~~~V~ek~Gv-P~q~iD~~aL~GDsSDNIPGVpGIG~~~~~~~~ger~~~~~~~~~~------~~~~~~-~ 237 (305)
T 3h7i_A 169 QWS---PMHKKWVKIKSGS-AEIDCMTKILKGDKKDNVASVKVRSDFWFTRVEGERTPSMKTSIVE------AIANDR-E 237 (305)
T ss_dssp EEE---TTTTEEECSSCSC-HHHHHHHHHHHCBGGGTBCCTTSCTTHHHHCCTTCCCCCCCHHHHH------HHHHCG-G
T ss_pred EEe---cCCHHHHHHHhCC-HHHHhhHHheeCccccCCCCCCcCCcccccccccccCCcchHHHHH------HHhhcc-c
Confidence 998 2334568899999 999999999999999999999999996 7777774 333211 1
Q ss_pred hhhhhhccHHH--hHhhchhhhhhhhhccccCCCCCcCCCccccc-cCCCCHHHHHHHHHHcCchhHHhhc
Q psy14489 216 IKGVIGKNLRF--ALNWLPKLKKILTIKTDCDLTKNIVSIPESLI-LQPKDEKLLMQLFNKYKLNKLNFLM 283 (284)
Q Consensus 216 ~~~~~~~~l~~--~~~~~~l~~~L~~l~~d~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~ 283 (284)
.+ +++.+ ..+....|+.|+.+.. +|-... ..|++.+. +.++...++..+|.+.|+++++..+
T Consensus 238 ~~----~~~~~~~~~~r~~~n~~lidf~~-ip~~i~-~~i~~~y~~~~~~~~~k~~~yf~~~~l~~l~~~~ 302 (305)
T 3h7i_A 238 QA----KVLLTESEYNRYKENLVLIDFDY-IPDNIA-SNIVNYYNSYKLPPRGKIYSYFVKAGLSKLTNSI 302 (305)
T ss_dssp GH----HHHSCHHHHHHHHHHHHHHCGGG-SCHHHH-HHHHHHHHTCCCCCTTHHHHHHHHTTCTTGGGGG
T ss_pred cH----HHhcCHHHHHHHhhcchhcchhh-ChHHHH-HHHHHHHhcCCCCCccccHHHHHHhhHHHHHhhh
Confidence 11 12221 1334445666666543 332221 24577776 5677889999999999999998765
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.9e-55 Score=412.68 Aligned_cols=250 Identities=17% Similarity=0.306 Sum_probs=189.9
Q ss_pred CcEEEEecchHHHHHhccCC-----CccCCCCcchhHHHHHHHHHHHHHHh-cCCCEEEEEEeCCCCccccccCchhhhC
Q psy14489 3 NTLLLVDGSSCIYRAFYALP-----DIRNIDNFPVGALYGTIKMLRKLYKN-YRATYIACIFDAKGKNFRNILYPSYKAT 76 (284)
Q Consensus 3 ~~~llIDg~~l~~r~~~a~~-----~l~~~~g~~t~ai~gf~~~l~~l~~~-~~~~~~i~~fD~~~~~~R~~l~~~YKa~ 76 (284)
.++++|||++|+||+||+++ ++.+++|.+|++++||+.++.++++. .+ +++||||++++||++.+++||++
T Consensus 18 ~~~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~---Pv~vFDG~~~~~r~~~~~~yk~~ 94 (346)
T 2izo_A 18 GKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVI---PIYVFDGKPPEQKSEELERRRKA 94 (346)
T ss_dssp TEEEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEE---EEEEECC----------------
T ss_pred CCEEEEEhHHHHHHHHHhccccccccccccCCCccHHHHHHHHHHHHHHHCCCc---EEEEECCCCcchhhhHHHHHHHH
Confidence 46999999999999999986 57889999999999999999999875 44 49999998899999999999999
Q ss_pred CCCCChhHH-----------------------HHHHHHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 77 RKKMPYNLI-----------------------LQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 77 R~~~p~~l~-----------------------~q~~~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
|..+|++|. .|++.++++|+.+|||++.+|| ||||+||+|++ .|..+.|+|
T Consensus 95 R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~-EADa~ia~La~-----~g~~~~I~S 168 (346)
T 2izo_A 95 KEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPS-EGEAEAAYLNK-----LGLSWAAAS 168 (346)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHH-----TTSSSEEEC
T ss_pred HHHhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCC-cHHHHHHHHHh-----CCCeEEEEC
Confidence 999999886 7899999999999999999999 99999999997 477899999
Q ss_pred CCCccccccCCCeEEEe--C---------------cEeeeHhHHHHHhCCChhHHHhhhhhcCCCCCCCC-CCCccChhh
Q psy14489 134 NDKDMAQLVSNKIALIN--N---------------NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLP-GVKKIGPKT 195 (284)
Q Consensus 134 ~DkDl~ql~~~~v~~~~--~---------------~~~~~~~~~~~~~G~~p~q~~~~~~L~GD~sDni~-Gv~giG~kt 195 (284)
+|+|++|+++++|.++. + ...++.+.+.+++|++|+||+++++|+| |||+| ||||||+||
T Consensus 169 ~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--~D~~p~Gv~GIG~Kt 246 (346)
T 2izo_A 169 QDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIG--TDYNPDGIRGIGPER 246 (346)
T ss_dssp SSSHHHHTTCSEEEESSCC-----------CCCCCCEEEEHHHHHHHHTCCHHHHHHHHHHHC--CSSSTTCSTTCCHHH
T ss_pred CCCCcceecCCeEEEEecccccccCcccccccccceEEEEHHHHHHHcCCCHHHHHHHHHHcC--CCCCCCCCCCcCHHH
Confidence 99999999999876554 1 1358999999999999999999999999 99999 999999999
Q ss_pred HHHHHHhcCCHHHHHHhhhhhhhhhhccHHHhHhhchhhhhhhhhccccCCCCCcCCCccccccCCCCHHHHHHHH-HHc
Q psy14489 196 AVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF-NKY 274 (284)
Q Consensus 196 A~~LL~~~gsle~i~~~~~~~~~~~~~~l~~~~~~~~l~~~L~~l~~d~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~ 274 (284)
|.+||++|||+|+|+++++++ ++++++ + +++++++.+++++..+ .+++.|.+||.+++.+|| +++
T Consensus 247 A~kLi~~~gsle~i~~~~~~~--k~~~~~----~----~~~l~~i~~~~~v~~~----~~~l~~~~~d~~~l~~~~~~~~ 312 (346)
T 2izo_A 247 ALKIIKKYGKIEKAMEYGEIS--KKDINF----N----IDEIRGLFLNPQVVKP----EEALDLNEPNGEDIINILVYEH 312 (346)
T ss_dssp HHHHHHHSSCC---------------------------CTTHHHHHHSCCCCCC----C-CCCCCCCCHHHHHHHTTTTT
T ss_pred HHHHHHHcCCHHHHHHHHHhc--cCCCCc----c----HHHHHHHhhCCCCCCc----cccCccCCCCHHHHHHHHHHhc
Confidence 999999999999999999866 233333 2 5899999999999887 789999999999999998 999
Q ss_pred Cch
Q psy14489 275 KLN 277 (284)
Q Consensus 275 ~~~ 277 (284)
||+
T Consensus 313 ~f~ 315 (346)
T 2izo_A 313 NFS 315 (346)
T ss_dssp CCC
T ss_pred CCC
Confidence 995
No 5
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=2e-54 Score=404.52 Aligned_cols=255 Identities=19% Similarity=0.262 Sum_probs=223.0
Q ss_pred CcEEEEecchHHHHHhccCC----CccCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCccccccCchhhhCC-
Q psy14489 3 NTLLLVDGSSCIYRAFYALP----DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATR- 77 (284)
Q Consensus 3 ~~~llIDg~~l~~r~~~a~~----~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~~i~~fD~~~~~~R~~l~~~YKa~R- 77 (284)
.++++|||++++||+|||.+ ++.+++|.+|++++||+.++.++++. + ..+++||||++++||++++++||++|
T Consensus 27 gk~l~IDgs~~lyr~~~a~~~~~~~l~~~~G~~T~al~g~~~~~~~ll~~-~-i~P~~VFDg~~~~~r~~~~~~yk~~R~ 104 (341)
T 3q8k_A 27 GRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-G-IKPVYVFDGKPPQLKSGELAKRSERRA 104 (341)
T ss_dssp TCEEEEEHHHHHHHHHHHCEETTEECBCTTSCBCHHHHHHHHHHHHHHTT-T-CEEEEEECCCCCGGGHHHHHHHHHHHH
T ss_pred CCEEEEecHHHHHHHHHccccccCCCCCCCCCCchHHHHHHHHHHHHHHC-C-CCceEEEeCCCcccchhhhHHHHHHHh
Confidence 47999999999999999986 58899999999999999999998862 2 34467899999999999999999655
Q ss_pred -----------CCCChhH-----------HHHHHHHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEcCC
Q psy14489 78 -----------KKMPYNL-----------ILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTND 135 (284)
Q Consensus 78 -----------~~~p~~l-----------~~q~~~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S~D 135 (284)
..+|+++ ..|++.++++|+.+|||++.+|| ||||+||+|+++ |..++|+|+|
T Consensus 105 ~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~-EADd~ia~La~~-----g~v~~i~s~D 178 (341)
T 3q8k_A 105 EAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAALVKA-----GKVYAAATED 178 (341)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHHT-----TSSSEEECSC
T ss_pred HhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECCc-cHHHHHHHHHhc-----CCeEEEEcCC
Confidence 4689999 88999999999999999999998 999999999984 5567789999
Q ss_pred CccccccCCCeEEE-e----C---cEeeeHhHHHHHhCCChhHHHhhhhhcCCCCCCCCCCCccChhhHHHHHHhcCCHH
Q psy14489 136 KDMAQLVSNKIALI-N----N---NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207 (284)
Q Consensus 136 kDl~ql~~~~v~~~-~----~---~~~~~~~~~~~~~G~~p~q~~~~~~L~GD~sDni~Gv~giG~ktA~~LL~~~gsle 207 (284)
+|++|+++++|... + + .+.++.+.+.+++|++|+||+|+++|+| ||+.|||||||||||.+||++|||+|
T Consensus 179 ~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--~D~~~gipGiG~KtA~kll~~~gsle 256 (341)
T 3q8k_A 179 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIE 256 (341)
T ss_dssp THHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHC--CSSSCCCTTCCHHHHHHHHHHHCSHH
T ss_pred ccccccCCcEEEEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcC--CCCCCCCCCccHHHHHHHHHHcCCHH
Confidence 99999999866321 1 1 2679999999999999999999999999 88888999999999999999999999
Q ss_pred HHHHhhhhhhhhhhccHHHhHhhchhhhhhhhhccccCCCCCcCCCccccccCCCCHHHHHHHH-HHcCchh
Q psy14489 208 NIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF-NKYKLNK 278 (284)
Q Consensus 208 ~i~~~~~~~~~~~~~~l~~~~~~~~l~~~L~~l~~d~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~~~~~ 278 (284)
+|++++++.+.++.+++. +. .+|+|. ++++++++.+ +++.|++||.++|.+|| +++||+.
T Consensus 257 ~i~~~~~~~k~~~~~~~~-~~----~~r~l~-l~~~V~~~~~-----~~l~~~~pd~~~l~~fl~~~~~f~~ 317 (341)
T 3q8k_A 257 EIVRRLDPNKYPVPENWL-HK----EAHQLF-LEPEVLDPES-----VELKWSEPNEEELIKFMCGEKQFSE 317 (341)
T ss_dssp HHHHHSCTTTSCCCTTCC-HH----HHHHHH-HSCCCCCTTT-----SCCCCCCCCHHHHHHHHTTTTCCCH
T ss_pred HHHHHHHhcCCCCCcccc-hH----HHHHHh-CCCCCCCCcc-----cccCCCCCCHHHHHHHHHHhcCCCH
Confidence 999999987777766664 32 378888 8888887664 57899999999999999 9999973
No 6
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=7.6e-54 Score=400.28 Aligned_cols=248 Identities=15% Similarity=0.237 Sum_probs=217.0
Q ss_pred CCcEEEEecchHHHHHhccCC-----CccCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCccccccCchhhhC
Q psy14489 2 QNTLLLVDGSSCIYRAFYALP-----DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKAT 76 (284)
Q Consensus 2 ~~~~llIDg~~l~~r~~~a~~-----~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~~i~~fD~~~~~~R~~l~~~YKa~ 76 (284)
..++++|||++|+||+||+++ ++.+++|.+|++++||+.++.++++.. ..+++||||++++||++++++||++
T Consensus 20 ~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~a~~g~~~~l~~ll~~~--i~Pv~vFDg~~~~~R~~~~~~yk~~ 97 (336)
T 1rxw_A 20 SGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVG--IRPVFVFDGEPPEFKKAEIEERKKR 97 (336)
T ss_dssp TTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHHT--CEEEEEECCSCCGGGHHHHHHHHHH
T ss_pred CCCEEEEEhHHHHHHHHHhhccccCCcccccCCCccHHHHHHHHHHHHHHHCC--CEEEEEEcCCCCcccccchHHHHHH
Confidence 347999999999999999986 578899999999999999999998753 2449999998899999999999999
Q ss_pred CCCCC-----------hhHHH-----------HHHHHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEcC
Q psy14489 77 RKKMP-----------YNLIL-----------QINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTN 134 (284)
Q Consensus 77 R~~~p-----------~~l~~-----------q~~~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S~ 134 (284)
|.++| +++.. |++.++++|+.+|||++.+|| |||++||++++ .|..+.|+|+
T Consensus 98 R~~~~~~~~~~~~~g~~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apg-eAEA~lA~la~-----~g~~~~I~S~ 171 (336)
T 1rxw_A 98 RAEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPS-EGEAQAAYMAA-----KGDVEYTGSQ 171 (336)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSS-CHHHHHHHHHH-----TTSSSEEECS
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhccCCHHHHHHHHHHHHhCCCCEEEcCc-hHHHHHHHHHH-----cCCeeEEEcC
Confidence 99988 55655 899999999999999999998 88989999984 5778999999
Q ss_pred CCccccccCCCe----EEEe-------------CcEeeeHhHHHHHhCCChhHHHhhhhhcCCCCCCCCCCCccChhhHH
Q psy14489 135 DKDMAQLVSNKI----ALIN-------------NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAV 197 (284)
Q Consensus 135 DkDl~ql~~~~v----~~~~-------------~~~~~~~~~~~~~~G~~p~q~~~~~~L~GD~sDni~Gv~giG~ktA~ 197 (284)
|+|++||++++| .++. +.+.++.+.+.+++|++|+||+|+++|+| |||+|||||||||||.
T Consensus 172 D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--sD~ipGv~GiG~KtA~ 249 (336)
T 1rxw_A 172 DYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVG--TDYNEGVKGVGVKKAL 249 (336)
T ss_dssp SSHHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHHHHTCCHHHHHHHHHHHC--BTTBCCCTTCCHHHHH
T ss_pred CCCcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHHHcCCCHHHHHHHHhhcC--CCCCCCCCCcCHHHHH
Confidence 999999999987 3331 11468999999999999999999999999 9999999999999999
Q ss_pred HHHHhcCCHHHHHHhhhhhhhhhhccHHHhHhhchhhhhhhhhccccCCCCCcCCCccccccCCCCHHHHHHHH-HHcCc
Q psy14489 198 KLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF-NKYKL 276 (284)
Q Consensus 198 ~LL~~~gsle~i~~~~~~~~~~~~~~l~~~~~~~~l~~~L~~l~~d~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~~~ 276 (284)
+||++|||+|+|++++++ +|. +. .+|+++.+++|++ + .+++.|.+||.+++.+|| +++||
T Consensus 250 kLl~~~gsle~i~~~~~~-------~l~-~~------~~l~~i~~~~~v~-~----~~~~~~~~~d~~~l~~~~~~~~~f 310 (336)
T 1rxw_A 250 NYIKTYGDIFRALKALKV-------NID-HV------EEIRNFFLNPPVT-D----DYRIEFREPDFEKAIEFLCEEHDF 310 (336)
T ss_dssp HHHHHHSSHHHHHHHHTC------------C------HHHHHHHHSCCCC-C----CCCCCCCCCCHHHHHHHHTTTTCC
T ss_pred HHHHHcCCHHHHHHhCCC-------CCc-cH------HHHHHHHhCCCCC-C----cccccCCCCCHHHHHHHHHHccCC
Confidence 999999999999999762 222 11 2789999999988 5 689999999999999999 99999
Q ss_pred hh
Q psy14489 277 NK 278 (284)
Q Consensus 277 ~~ 278 (284)
+.
T Consensus 311 ~~ 312 (336)
T 1rxw_A 311 SR 312 (336)
T ss_dssp CH
T ss_pred CH
Confidence 63
No 7
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=2.3e-52 Score=388.86 Aligned_cols=242 Identities=16% Similarity=0.242 Sum_probs=214.2
Q ss_pred CcEEEEecchHHHHHhccCC-----CccCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCccccccCchhhhCC
Q psy14489 3 NTLLLVDGSSCIYRAFYALP-----DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATR 77 (284)
Q Consensus 3 ~~~llIDg~~l~~r~~~a~~-----~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~~i~~fD~~~~~~R~~l~~~YKa~R 77 (284)
.++++|||++|+||+||+++ ++.+++|.+|++++||+.++.+++. .+ ..+++||||++++||++.+++||++|
T Consensus 21 ~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~-~~-i~Pv~vFDG~~~~~k~~~~~~yk~~R 98 (326)
T 1a76_A 21 GKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLE-ND-ITPIWVFDGEPPKLKEKTRKVRREMK 98 (326)
T ss_dssp TCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHH-TT-CEEEEEECCCSSCCCCSSCCSSCSSS
T ss_pred CCEEEEEhHHHHHHHHHhhccccccccccccCCccHHHHHHHHHHHHHHH-CC-CeEEEEEeCcCcccchhhHHHHHHHH
Confidence 46999999999999999986 5788999999999999999999853 33 35599999988999999999999999
Q ss_pred CCCChhHHH-----------------------HHHHHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEcC
Q psy14489 78 KKMPYNLIL-----------------------QINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTN 134 (284)
Q Consensus 78 ~~~p~~l~~-----------------------q~~~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S~ 134 (284)
.++|++|.. |++.++++|+.+|||++.+|| ||||+||+|++ .|..+.|+|+
T Consensus 99 ~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apg-EAD~~ia~La~-----~g~~~~I~S~ 172 (326)
T 1a76_A 99 EKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPS-EGEAQASYMAK-----KGDVWAVVSQ 172 (326)
T ss_dssp CSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHH-----TTSSSEEECS
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCc-cHHHHHHHHHH-----CCCEEEEecC
Confidence 999988754 899999999999999999999 99999999998 4677899999
Q ss_pred CCccccccCCCeEEEe-----CcEeeeHhHHHHHhCCChhHHHhhhhhcCCCCCCCC-CCCccChhhHHHHHHhcCCHHH
Q psy14489 135 DKDMAQLVSNKIALIN-----NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLP-GVKKIGPKTAVKLLNQYNSLEN 208 (284)
Q Consensus 135 DkDl~ql~~~~v~~~~-----~~~~~~~~~~~~~~G~~p~q~~~~~~L~GD~sDni~-Gv~giG~ktA~~LL~~~gsle~ 208 (284)
|+|++|+++++|.+.. ..+.++.+.+.+++|++|+||+|+++|+| |||+| ||||||||||.+||++ ||+|+
T Consensus 173 D~Dll~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--sD~~p~GvpGiG~ktA~kli~~-gsle~ 249 (326)
T 1a76_A 173 DYDALLYGAPRVVRNLTTTKEMPELIELNEVLEDLRISLDDLIDIAIFMG--TDYNPGGVKGIGFKRAYELVRS-GVAKD 249 (326)
T ss_dssp SSGGGGGTCSEEEESSSSCSSCCEEEEHHHHHHHHTCCHHHHHHHHHHHC--CTTSTTTTTTCCHHHHHHHHHH-TCHHH
T ss_pred CcccceecCCEEEEeecCCCCceEEEEHHHHHHHcCCCHHHHHHHHHHcC--CCCCCCCCCCcCHHHHHHHHHc-CCHHH
Confidence 9999999998875543 24689999999999999999999999999 99999 9999999999999999 99999
Q ss_pred HH-HhhhhhhhhhhccHHHhHhhchhhhhhhhhccccCCCCCcCCCccccccCCCCHHHHHHH-HHHcCchh
Q psy14489 209 II-NNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQL-FNKYKLNK 278 (284)
Q Consensus 209 i~-~~~~~~~~~~~~~l~~~~~~~~l~~~L~~l~~d~~~~~~~~~~~~~l~~~~~~~~~l~~~-~~~~~~~~ 278 (284)
|+ +++++++ + ..+++++++|++ |+ ++.|..||.+.+.+| |+++||++
T Consensus 250 i~~~~~~~~~-~--------~~~~~l~~~l~~---~~-----------~~~~~~~d~~~l~~~~~~~~~f~~ 298 (326)
T 1a76_A 250 VLKKEVEYYD-E--------IKRIFKEPKVTD---NY-----------SLSLKLPDKEGIIKFLVDENDFNY 298 (326)
T ss_dssp HHHHHSTTHH-H--------HHHHHHSCCCCC---CC-----------CCCCCCCCHHHHHHHHTTTTCCCH
T ss_pred HHHHHHhHHH-H--------HHHHHhCCCCCC---Cc-----------cCCCCCCCHHHHHHHHHHhcCCCH
Confidence 99 9987552 1 237888888877 21 457889999999999 69999975
No 8
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=1.2e-51 Score=391.10 Aligned_cols=253 Identities=19% Similarity=0.272 Sum_probs=204.0
Q ss_pred CcEEEEecchHHHHHhccCCC----ccCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCccccccCchhhhCCC
Q psy14489 3 NTLLLVDGSSCIYRAFYALPD----IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRK 78 (284)
Q Consensus 3 ~~~llIDg~~l~~r~~~a~~~----l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~~i~~fD~~~~~~R~~l~~~YKa~R~ 78 (284)
.++++|||++|+||+||+++. +.+++|.+|++++||+.++.++++. + ..+++||||++++||++++++||++|.
T Consensus 27 g~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~-~-i~P~~VFDG~~~~~K~~~~~~yk~~R~ 104 (379)
T 1ul1_X 27 GRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-G-IKPVYVFDGKPPQLKSGELAKRSERRA 104 (379)
T ss_dssp TCCEEEEHHHHHHHHHSCC-------------CCHHHHHHHHHHHHHHHT-T-CCEEEEECCSCCSCCCCCCCCC-----
T ss_pred CCEEEEEchHHHHHHHHhCCCcccccCcCCCCCchHHHHHHHHHHHHHHC-C-CCeEEEEeCCCcccccchHHHHHhhhh
Confidence 468999999999999999863 7789999999999999999999974 2 233669999889999999999999998
Q ss_pred CC------------ChhH-----------HHHHHHHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEcCC
Q psy14489 79 KM------------PYNL-----------ILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTND 135 (284)
Q Consensus 79 ~~------------p~~l-----------~~q~~~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S~D 135 (284)
.+ |+++ ..|++.++++|+.+|||++.+|| ||||+||+|+++ +..+.|+|+|
T Consensus 105 ~~~~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apg-EADd~iA~La~~-----g~~~~iiS~D 178 (379)
T 1ul1_X 105 EAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAALVKA-----GKVYAAATED 178 (379)
T ss_dssp ------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHHH-----TSSSEEECSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCeecCCC-cHHHHHHHHHhc-----CCeEEEEecC
Confidence 87 5565 57789999999999999999999 999999999985 4457899999
Q ss_pred CccccccCCCeEEEe--C------cEeeeHhHHHHHhCCChhHHHhhhhhcC-CCCCCCCCCCccChhhHHHHHHhcCCH
Q psy14489 136 KDMAQLVSNKIALIN--N------NKIHDRTTIISRFGVSPEKIVDYFSLIG-DMSDNLPGVKKIGPKTAVKLLNQYNSL 206 (284)
Q Consensus 136 kDl~ql~~~~v~~~~--~------~~~~~~~~~~~~~G~~p~q~~~~~~L~G-D~sDni~Gv~giG~ktA~~LL~~~gsl 206 (284)
+|++|+++++|.++. . ...++.+.+.+++|++|+||+++++|+| |.+|| |||||||||.+||++|||+
T Consensus 179 ~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~d~---IpGIG~KtA~kLl~~~gsl 255 (379)
T 1ul1_X 179 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCES---IRGIGPKRAVDLIQKHKSI 255 (379)
T ss_dssp THHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHHHTCCHHHHHHHHHHHHCSSSCC---CTTCCHHHHHHHHHHSSSH
T ss_pred cCccccccceEEEEecccccCcCCeEEEeHHHHHHHhCCCHHHHHHHHHHhCCCcCCC---CCCcCHHHHHHHHHHcCCH
Confidence 999999999875543 1 3579999999999999999999999999 66554 5788999999999999999
Q ss_pred HHHHHhhhhhhhhhhccHHHhHhhchhhhhhhhhccccCCCCCcCCCccccccCCCCHHHHHHH-HHHcCch
Q psy14489 207 ENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQL-FNKYKLN 277 (284)
Q Consensus 207 e~i~~~~~~~~~~~~~~l~~~~~~~~l~~~L~~l~~d~~~~~~~~~~~~~l~~~~~~~~~l~~~-~~~~~~~ 277 (284)
|+|++++++.+.++.+++... .+++|+ +.++++++.+ + ++.|..||.+.+.+| |+++||+
T Consensus 256 e~i~~~~~~~k~~~~~~~~~~-----~ar~l~-l~~~v~~~~~----~-~l~~~~pd~~~l~~fl~~~~~f~ 316 (379)
T 1ul1_X 256 EEIVRRLDPNKYPVPENWLHK-----EAHQLF-LEPEVLDPES----V-ELKWSEPNEEELIKFMCGEKQFS 316 (379)
T ss_dssp HHHHTTCCCTTSCCCSSCCHH-----HHHHHH-HSCCCCCGGG----C-CCCCCCCCHHHHHHHTTTTSCCC
T ss_pred HHHHHHHHhhcccCCCcCCHH-----HHHHHh-cCCeeCCCCC----c-cCCCCCCCHHHHHHHHHHHcCCC
Confidence 999999988776666666432 488888 9999998777 6 899999999999995 7899995
No 9
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=2.5e-50 Score=377.05 Aligned_cols=245 Identities=14% Similarity=0.210 Sum_probs=213.1
Q ss_pred CcEEEEecchHHHHHhccCC-----CccCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCccccccCc------
Q psy14489 3 NTLLLVDGSSCIYRAFYALP-----DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYP------ 71 (284)
Q Consensus 3 ~~~llIDg~~l~~r~~~a~~-----~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~~i~~fD~~~~~~R~~l~~------ 71 (284)
.++++|||++|+||+||+++ ++.+++|.+|++++||+.++.++++ .+.++++||||++++||++.++
T Consensus 21 g~~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~--~~i~pv~VFDG~~~~~K~~~~~~R~~~r 98 (340)
T 1b43_A 21 GKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLME--AGIKPVYVFDGEPPEFKKKELEKRREAR 98 (340)
T ss_dssp TCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHH--TTCEEEEEECCSCCCCSSCSSTTCCCCT
T ss_pred CCEEEEEhHHHHHHHHHHhccccCCccccccCCchHHHHHHHHHHHHHHh--CCCEEEEEecCCCchhhhhhHHHHHHHH
Confidence 46999999999999999885 5788999999999999999999986 5789999999988999999988
Q ss_pred ---------hhhhCCCCCChhH--------HHHHHHHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEcC
Q psy14489 72 ---------SYKATRKKMPYNL--------ILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTN 134 (284)
Q Consensus 72 ---------~YKa~R~~~p~~l--------~~q~~~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S~ 134 (284)
.||++|.++|+++ ..|++.++++|+.+|||++.+| |||||+||+|+++ |..+.|+|+
T Consensus 99 ~~~~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~ap-~EADa~iA~La~~-----g~~~~i~S~ 172 (340)
T 1b43_A 99 EEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAP-SEGEAQAAYMAAK-----GSVYASASQ 172 (340)
T ss_dssp THHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECS-SCHHHHHHHHHHH-----TSSSEEECS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEEcC-hhHHHHHHHHHHc-----CCEEEEEcc
Confidence 7999999888888 7889999999999999999999 8999999999984 456889999
Q ss_pred CCccccccCCCeEEEe--C--c-------------EeeeHhHHHHHhCCChhHHHhhhhhcCCCCCCCC-CCCccChhhH
Q psy14489 135 DKDMAQLVSNKIALIN--N--N-------------KIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLP-GVKKIGPKTA 196 (284)
Q Consensus 135 DkDl~ql~~~~v~~~~--~--~-------------~~~~~~~~~~~~G~~p~q~~~~~~L~GD~sDni~-Gv~giG~ktA 196 (284)
|+|++|+++++|.... + . +.++.+.+.+++|++|+||+++++|+| |||+| ||||||+|||
T Consensus 173 D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--~Dy~p~gv~GiG~ktA 250 (340)
T 1b43_A 173 DYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVG--TDYNPGGIKGIGLKKA 250 (340)
T ss_dssp SSHHHHTTCSEEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHC--CTTSTTCSTTCCHHHH
T ss_pred CCCcceecCcEEEEEeccCCCccCcccccccccceeEEEHHHHHHHhCCCHHHHHHHHHhcC--CCCCCCCCCCccHHHH
Confidence 9999999998875443 2 1 358999999999999999999999999 99999 9999999999
Q ss_pred HHHHHhcCCHHHHHHhhhhhhhhhhccHHHhHhhchhhhhhhhhccccCCCCCcCCCccccccCCCCHHHHHHHH-HHcC
Q psy14489 197 VKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF-NKYK 275 (284)
Q Consensus 197 ~~LL~~~gsle~i~~~~~~~~~~~~~~l~~~~~~~~l~~~L~~l~~d~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~~ 275 (284)
.+||++|||+|+++++.++++.+ + ...+++++ +.+| .+++.|..||.+++.+|| +++|
T Consensus 251 ~kli~~~gsle~il~~~~~~~~~---~----~~~~~~~~----~v~d----------~~~~~~~~pd~~~l~~~~~~~~~ 309 (340)
T 1b43_A 251 LEIVRHSKDPLAKFQKQSDVDLY---A----IKEFFLNP----PVTD----------NYNLVWRDPDEEGILKFLCDEHD 309 (340)
T ss_dssp HHHHHTCSSGGGGTGGGCSSCHH---H----HHHHHHSC----CCCC----------CCCCCCCCCCHHHHHHHHTTTTC
T ss_pred HHHHHHcCCHHHHHcCCCCccHH---H----HHHHHhCC----CCCC----------cccCCCCCCCHHHHHHHHHHhcC
Confidence 99999999999999998776421 1 12244444 2222 347889999999999998 9999
Q ss_pred chh
Q psy14489 276 LNK 278 (284)
Q Consensus 276 ~~~ 278 (284)
|+.
T Consensus 310 f~~ 312 (340)
T 1b43_A 310 FSE 312 (340)
T ss_dssp CCH
T ss_pred CCH
Confidence 974
No 10
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=7.8e-51 Score=382.82 Aligned_cols=249 Identities=17% Similarity=0.264 Sum_probs=210.5
Q ss_pred CcEEEEecchHHHHHhccCC-----CccCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCccccccCchhhhCC
Q psy14489 3 NTLLLVDGSSCIYRAFYALP-----DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATR 77 (284)
Q Consensus 3 ~~~llIDg~~l~~r~~~a~~-----~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~~i~~fD~~~~~~R~~l~~~YKa~R 77 (284)
.++++|||++|+||+|++++ ++.+++|.+|++++||+.++.+++.. + ..+++||||++++||++++++||++|
T Consensus 35 gk~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al~gf~~r~~~ll~~-~-i~Pv~VFDg~~p~~K~~~~~~yK~~R 112 (363)
T 3ory_A 35 GKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINIVEA-G-IKPVYVFDGKPPELKAREIERRKAVK 112 (363)
T ss_dssp TCEEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHT-T-CEEEEEECSSCGGGCHHHHHHHHHHH
T ss_pred CCEEEEehHHHHHHHHHhhhccCCCccCCCCCCCccHHHHHHHHHHHHHHc-C-CCcEEEEcCCCccchHHHHHHHHHhh
Confidence 47999999999999888763 57899999999999999999998863 2 34589999999999999999999999
Q ss_pred CCCChhHHHH-----------------------HHHHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEcC
Q psy14489 78 KKMPYNLILQ-----------------------INLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTN 134 (284)
Q Consensus 78 ~~~p~~l~~q-----------------------~~~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S~ 134 (284)
..+|+++..| ++.++++|+.+|||++.+|| ||||+||+|++ .|..+.|+|+
T Consensus 113 ~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apg-EADaqiA~La~-----~g~~~~I~S~ 186 (363)
T 3ory_A 113 EEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPA-EGEAQAAYIVK-----KGDAYASASQ 186 (363)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHH-----TTSCSEEECS
T ss_pred hhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCc-cHHHHHHHHHH-----CCCeEEEECC
Confidence 9999999876 89999999999999999998 99999999996 5788999999
Q ss_pred CCccccccCCCeEEE-e-C---------------cEeeeHhHHHHHhCCChhHHHhhhhhcCCCCCCCC-CCCccChhhH
Q psy14489 135 DKDMAQLVSNKIALI-N-N---------------NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLP-GVKKIGPKTA 196 (284)
Q Consensus 135 DkDl~ql~~~~v~~~-~-~---------------~~~~~~~~~~~~~G~~p~q~~~~~~L~GD~sDni~-Gv~giG~ktA 196 (284)
|+|++|+++++|... + + .+.++.+.+.+++|++|+||+|+++|+| |||+| ||||||||||
T Consensus 187 D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--sDy~p~GVpGIG~KtA 264 (363)
T 3ory_A 187 DYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLG--TDYNPDGFEGIGPKKA 264 (363)
T ss_dssp SSHHHHTTCSEEEESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHC--BTTBTTCSTTCCHHHH
T ss_pred CcCccccCCCeEEEEeeccccccCCccccccccceEEEcHHHHHHHhCcCHHHHHHHHHHhC--CCCCCCCCCCcCHHHH
Confidence 999999999876432 2 1 1578999999999999999999999999 99999 9999999999
Q ss_pred HHHHHhcCCHHHHHHhhhhhhhhhhccHHHhHhhchhhhhhhhhccccCCCCCcCCCccccccCCCCHHHHHHHH-HHcC
Q psy14489 197 VKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF-NKYK 275 (284)
Q Consensus 197 ~~LL~~~gsle~i~~~~~~~~~~~~~~l~~~~~~~~l~~~L~~l~~d~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~~ 275 (284)
.+||++|||+|+|+++++.. ++.-.. +...+++ .++++..+ . +++|+.||.+.|.+|| +++|
T Consensus 265 ~kLl~~~gsle~il~~~~~~--~~~~~~-~~~~~~f---------~~p~v~~~----~-~~~w~~pd~~~l~~fl~~~~~ 327 (363)
T 3ory_A 265 LQLVKAYGGIEKIPKPILKS--PIEVDV-IAIKKYF---------LQPQVTDN----Y-RIEWHTPDPDAVKRILVDEHD 327 (363)
T ss_dssp HHHHHHHTSSTTSCGGGCCC--SSCCCH-HHHHHHH---------HSCCCCSC----C-CCCCCCCCHHHHHHHHTTTTC
T ss_pred HHHHHHcCCHHHHHHhcccc--cCCCCH-HHHHHHh---------cCCCCCCC----C-CCCCCCCCHHHHHHHHHhccC
Confidence 99999999999999988741 111011 1122223 24444444 3 5899999999999996 7999
Q ss_pred chh
Q psy14489 276 LNK 278 (284)
Q Consensus 276 ~~~ 278 (284)
|+.
T Consensus 328 f~~ 330 (363)
T 3ory_A 328 FSI 330 (363)
T ss_dssp CCH
T ss_pred CCH
Confidence 973
No 11
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=4.1e-39 Score=302.07 Aligned_cols=220 Identities=16% Similarity=0.175 Sum_probs=173.6
Q ss_pred CcEEEEecchHHHHHhccCCCccCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEEEeCCC-Cccccc-------------
Q psy14489 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG-KNFRNI------------- 68 (284)
Q Consensus 3 ~~~llIDg~~l~~r~~~a~~~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~~i~~fD~~~-~~~R~~------------- 68 (284)
.+.+.|||++|+||++|++.. ....|.+|+++.+|+.+..+++.+++ ..+++||||.. +..|..
T Consensus 24 Gk~vaIDas~wL~~~~~~~~~-~l~~G~~t~~l~~~~~r~l~~L~~~g-I~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~ 101 (352)
T 3qe9_Y 24 GQVVAVDTYCWLHKGAIACAE-KLAKGEPTDRYVGFCMKFVNMLLSHG-IKPILVFDGCTLPSKKEVERSRRERRQANLL 101 (352)
T ss_dssp TSEEEEETHHHHHHHHHHTHH-HHHTTCCCCHHHHHHHHHHHHHHHTT-CEEEEEECCSCCTTTHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecHHHHHHhhhccch-hhcCCCCcHHHHHHHHHHHHHHHHcC-CEEEEEECCCCcHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988742 34689999999999999999888877 68899999965 333322
Q ss_pred -cCchhhhCCCCCChhH--------HHHHHHHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEcCCCccc
Q psy14489 69 -LYPSYKATRKKMPYNL--------ILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMA 139 (284)
Q Consensus 69 -l~~~YKa~R~~~p~~l--------~~q~~~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S~DkDl~ 139 (284)
....|+++|.....+. ..+.+.++++|+.+|||++.+| |||||+||+|++ .|..+.|+|+|+|++
T Consensus 102 ~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap-~EADaqiA~La~-----~g~~~~I~S~D~Dll 175 (352)
T 3qe9_Y 102 KGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAP-YEADAQLAYLNK-----AGIVQAIITEDSALL 175 (352)
T ss_dssp HHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECS-SCHHHHHHHHHH-----TTSCSEEECSCGGGG
T ss_pred HHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECC-cchHHHHHHHHH-----CCCeEEEEeCCcCcc
Confidence 2455666663211010 1456789999999999999876 899999999998 477889999999999
Q ss_pred cccCCCeEE-Ee---CcEeeeHhHH--HHHhC--CChhHHHhhhhhcCCCCCCCCCCCccChhhHHHHHHhc--CCHHHH
Q psy14489 140 QLVSNKIAL-IN---NNKIHDRTTI--ISRFG--VSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQY--NSLENI 209 (284)
Q Consensus 140 ql~~~~v~~-~~---~~~~~~~~~~--~~~~G--~~p~q~~~~~~L~GD~sDni~Gv~giG~ktA~~LL~~~--gsle~i 209 (284)
||++++|.. ++ +...++.+.+ .+++| ++|+||+|+++|+| |||+|||||||+|||.+||++| ||++++
T Consensus 176 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~q~id~~~L~G--~D~~pgv~GiG~ktA~kli~~~~~~~l~~i 253 (352)
T 3qe9_Y 176 AFGCKKVILKMDQFGNGLEIDQARLGMCRQLGDVFTEEKFRYMCILSG--CDYLSSLRGIGLAKACKVLRLANNPDIVKV 253 (352)
T ss_dssp GGTCSEEEESCCTTSEEEEEEGGGGTTCCTTCSSCCHHHHHHHHHHHC--CSSSCCCTTCCHHHHHHHHHHCCCSCHHHH
T ss_pred cccCCeEEEeccCCCCcEEEeHHHHHHHHHhCCCCCHHHHHHHHHhcC--CCCCCCCCCeeHHHHHHHHHHhCCCCHHHH
Confidence 999998732 33 2345777775 57889 99999999999999 9999999999999999999999 799999
Q ss_pred HHhhhhh-hh--hhhccHHHhHhhch
Q psy14489 210 INNANNI-KG--VIGKNLRFALNWLP 232 (284)
Q Consensus 210 ~~~~~~~-~~--~~~~~l~~~~~~~~ 232 (284)
++++++. +. ++.+.+.+....|+
T Consensus 254 l~~~~~~l~~~~~vp~~~~~~~~~A~ 279 (352)
T 3qe9_Y 254 IKKIGHYLKMNITVPEDYINGFIRAN 279 (352)
T ss_dssp HTTHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHH
Confidence 9998753 32 45566665544443
No 12
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.95 E-value=0.00036 Score=48.73 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=24.2
Q ss_pred CCCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 186 PGVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
-.|||||+|++..||+.|||+++|..+
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i~~A 33 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAELAAL 33 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHHHTC
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 358899999999999999999999754
No 13
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=96.57 E-value=0.00099 Score=48.18 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=25.8
Q ss_pred CCCCCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 184 NLPGVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 184 ni~Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
-+.+|||||+++|.+|++.||++++++++
T Consensus 25 ~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a 53 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKYMGGLQGLRNA 53 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHHHSCHHHHHHC
T ss_pred HHhcCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 34589999999999999999999998875
No 14
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=96.57 E-value=0.0013 Score=48.65 Aligned_cols=26 Identities=8% Similarity=0.221 Sum_probs=23.9
Q ss_pred CCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 187 GVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
.|||||||++..||+.|||+++|..+
T Consensus 22 ~IpGIG~kr~~~LL~~FgSl~~i~~A 47 (84)
T 1z00_B 22 KMPGVNAKNCRSLMHHVKNIAELAAL 47 (84)
T ss_dssp TCSSCCHHHHHHHHHHSSCHHHHHHS
T ss_pred hCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 58899999999999999999999775
No 15
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.37 E-value=0.0019 Score=45.74 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=24.5
Q ss_pred CCCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 186 PGVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
.||||||+++|.+|++.|||+++++.+
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~~~l~~a 43 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSVERVFTA 43 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 468999999999999999999998765
No 16
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=96.35 E-value=0.032 Score=58.97 Aligned_cols=187 Identities=13% Similarity=0.098 Sum_probs=104.8
Q ss_pred EEEEecchHHHHHhccCCCccCCCCcchhHHHHHHHHHHHHHHhcCCCE-EEEEEeCCCCcc-----ccccCchh-----
Q psy14489 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATY-IACIFDAKGKNF-----RNILYPSY----- 73 (284)
Q Consensus 5 ~llIDg~~l~~r~~~a~~~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~-~i~~fD~~~~~~-----R~~l~~~Y----- 73 (284)
-|.||.|+++|.+.+....-.......-......+.-+.+++...+|.. +++|+||..|.. |..-+...
T Consensus 31 nLYlDmNgIIH~c~h~~~~~~~~~~~e~e~~~~if~yid~l~~~vrPrkll~iAiDGvAPrAKmnqQR~RRfrsa~~~~~ 110 (1140)
T 2y35_A 31 NLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQ 110 (1140)
T ss_dssp EEEEEHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHCCSSEEEEECCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHheeccceeEEEEecCCCchhHHHHHHHHHhhhhhhhhh
Confidence 5789999999999885421000001112333445566666666677755 699999966521 21111111
Q ss_pred ---hh---------CCCC----CC-----hhHHHHHHH-HHHHHHh----cCCcEEe----eCCchHHHHHHHHHHHhhH
Q psy14489 74 ---KA---------TRKK----MP-----YNLILQINL-IHQMVKA----IGWPILI----IKGVEADDVIGTLAKQAVT 123 (284)
Q Consensus 74 ---Ka---------~R~~----~p-----~~l~~q~~~-i~~~l~~----~gi~~~~----~~g~EADD~ia~la~~~~~ 123 (284)
|+ .+=. +| ..|..++.. +..-+.. -++.++. +|| |++-=|-...|..+.
T Consensus 111 ~~~~~~~~g~~~~~~~fdsn~ITPGT~FM~~l~~~L~~~i~~k~~~d~~w~~~~Vi~S~~~vPG-EGEhKIm~~IR~~~~ 189 (1140)
T 2y35_A 111 QEAKAAQRGELREHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPG-EGEHKIMDYIRYMKT 189 (1140)
T ss_dssp HHHHHHHC-------CCCSGGGSTTSHHHHHHHHHHHHHHHHHHHHCGGGSSSEEEEECSSSCS-CHHHHHHHHHHHHHH
T ss_pred hHHHHhhcCCccccccCCccccCCCcHHHHHHHHHHHHHHHHHhccCccccceEEEEeCCCCCC-chHHHHHHHHHHHhh
Confidence 10 0000 13 223433332 3332221 2455654 678 999888888776543
Q ss_pred h----CCCeEEEEcCCCcccccc----CCCeEEEe-C--------------c--EeeeHhHHHH----Hh--------CC
Q psy14489 124 K----HNLKVIISTNDKDMAQLV----SNKIALIN-N--------------N--KIHDRTTIIS----RF--------GV 166 (284)
Q Consensus 124 ~----~~~~v~I~S~DkDl~ql~----~~~v~~~~-~--------------~--~~~~~~~~~~----~~--------G~ 166 (284)
+ ++....|++.|.|+..|. .+++.+++ . . ..++..-+.+ .+ ..
T Consensus 190 ~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~~~~f~~l~i~~lReyL~~ef~~~~~~~~~~ 269 (1140)
T 2y35_A 190 QPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEETRFFLLHLGLLREYLELEFDALRTDEHKL 269 (1140)
T ss_dssp STTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGGGCEEEEEEHHHHHHHHHHHGGGGCCSSSCC
T ss_pred CCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeecccccccccccccccccceEEEEehHHHHHHHHHhhhhccccccc
Confidence 2 356899999999998863 35787776 1 0 1233332222 11 22
Q ss_pred Chh----HHHhhhhhcCCCCCCCCCCCccChh
Q psy14489 167 SPE----KIVDYFSLIGDMSDNLPGVKKIGPK 194 (284)
Q Consensus 167 ~p~----q~~~~~~L~GD~sDni~Gv~giG~k 194 (284)
+.+ -|+.++.|+| .|.+|++|++...
T Consensus 270 d~eriidDfVfl~fl~G--NDFLP~lp~l~I~ 299 (1140)
T 2y35_A 270 DIAQLIDDWVLMGFLVG--NDFIPHLPCLHIS 299 (1140)
T ss_dssp CHHHHHHHHHHHHHHHC--CTTSCCCTTCCTT
T ss_pred cHHHHHHHHHHHHHHhC--CccCCCCCccccC
Confidence 334 4566899999 7999999998743
No 17
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.25 E-value=0.0023 Score=47.33 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 186 PGVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
.+|||||+++|.+|++.|||+++++.+
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl~~l~~a 48 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSLEQLIAA 48 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBHHHHHHC
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHHhC
Confidence 569999999999999999999998865
No 18
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=96.03 E-value=0.0026 Score=47.37 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=24.1
Q ss_pred CCCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 186 PGVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
-+|||||+++|.+|++.||++++++++
T Consensus 35 ~~IpgIG~~~A~~Ll~~fgs~~~l~~a 61 (91)
T 2a1j_B 35 TTVKSVNKTDSQTLLTTFGSLEQLIAA 61 (91)
T ss_dssp TTSTTCCHHHHHHHHHHHSSHHHHHSC
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHHhC
Confidence 468999999999999999999998754
No 19
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=95.88 E-value=0.0026 Score=54.88 Aligned_cols=114 Identities=16% Similarity=0.224 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEeeCCch--------HHHHHHHHHHHhhHhCCCeEEEEcCCCccccccCCCeEEEeCc-E-
Q psy14489 84 LILQINLIHQMVKAIGWPILIIKGVE--------ADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINNN-K- 153 (284)
Q Consensus 84 l~~q~~~i~~~l~~~gi~~~~~~g~E--------ADD~ia~la~~~~~~~~~~v~I~S~DkDl~ql~~~~v~~~~~~-~- 153 (284)
|..|... +.+.+..+++.+.|.. .+++.+.++..... .+..++..++..|..+++..-.....+. .
T Consensus 68 l~~Q~~~---l~~~~~~~~lliE~d~~~~~~~~~~~~i~~~l~~~~~~-~~~~vi~t~s~~eta~~l~~l~~~~~~~~~~ 143 (219)
T 2bgw_A 68 LFEQASR---LAEHYETVFIIVEGPPVPRRYRGRERSLYAAMAALQLD-YGIRLMNTMDPKGTALVIESLARLSTREGGQ 143 (219)
T ss_dssp HHHHHHH---HHHHCSEEEEEEESCSSCGGGTTTHHHHHHHHHHHHHH-SCCEEEEESSHHHHHHHHHHHHHHHSCBCCT
T ss_pred HHHHHHH---HHHhcCCcEEEEEecCccccccCCHHHHHHHHHHHHHH-CCceEEEcCCHHHHHHHHHHHHHhccccccc
Confidence 4444443 3444677777777653 78899999877666 6888777777777665543100000000 0
Q ss_pred eeeHhHHHHHhCCChhHHHhhhhhcCCCCCCCCCCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 154 IHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 154 ~~~~~~~~~~~G~~p~q~~~~~~L~GD~sDni~Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
.++.. -...|....+....+ +.||||||+++|..|++.|||+++++++
T Consensus 144 ai~~~-----~~~~~~~~~~~~~~~------L~~i~gVg~~~a~~Ll~~fgs~~~l~~a 191 (219)
T 2bgw_A 144 RIVIH-----KKPRLSDVREWQLYI------LQSFPGIGRRTAERILERFGSLERFFTA 191 (219)
T ss_dssp TCCCC-----CCCCCCHHHHHHHHH------HHTSTTCCHHHHHHHHHHHSSHHHHTTC
T ss_pred ccccc-----cccccccHHHHHHHH------HhcCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 00000 001121211111111 2369999999999999999999998754
No 20
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=95.55 E-value=0.0052 Score=53.34 Aligned_cols=27 Identities=41% Similarity=0.600 Sum_probs=24.6
Q ss_pred CCCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 186 PGVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
-||||||+++|.+|++.|||++++.++
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~~i~~A 197 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLENIRSA 197 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHTS
T ss_pred cCCCCcCHHHHHHHHHHcCCHHHHHhC
Confidence 689999999999999999999998754
No 21
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=95.34 E-value=0.35 Score=50.98 Aligned_cols=186 Identities=17% Similarity=0.212 Sum_probs=102.8
Q ss_pred EEEEecchHHHHHhccCCCccCCCCcc-hhHHHHHHHHHHHHHHhcCCCEE-EEEEeCCCCc----------cccccCch
Q psy14489 5 LLLVDGSSCIYRAFYALPDIRNIDNFP-VGALYGTIKMLRKLYKNYRATYI-ACIFDAKGKN----------FRNILYPS 72 (284)
Q Consensus 5 ~llIDg~~l~~r~~~a~~~l~~~~g~~-t~ai~gf~~~l~~l~~~~~~~~~-i~~fD~~~~~----------~R~~l~~~ 72 (284)
-|.||.|+++|.+.+....-.. .-.. ...+...+.-+.+++...+|... ++|+||..|. ||...-..
T Consensus 31 nLYlDmNgIIH~c~h~~~~~~~-~~~te~e~~~~if~yid~l~~~vrPrkllyiAiDGVAPrAKmnqQR~RRfrsa~~~~ 109 (1155)
T 3pie_A 31 NLYLDMNSILHNCTHGDGSEVN-SRLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAE 109 (1155)
T ss_pred eEEEecccceeeeecCCCCccc-cCCCHHHHHHHHHHHHHHHHHhcCcceEEEEEecCCCChhHHHHHHHHHHHhhhhhh
Confidence 4789999999999775421000 0111 12333455566666666778554 6999996542 22211111
Q ss_pred ---hhhCCC--C------------CC-----hhHHHHHHH-HHHHHHh----cCCcEEe----eCCchHHHHHHHHHHHh
Q psy14489 73 ---YKATRK--K------------MP-----YNLILQINL-IHQMVKA----IGWPILI----IKGVEADDVIGTLAKQA 121 (284)
Q Consensus 73 ---YKa~R~--~------------~p-----~~l~~q~~~-i~~~l~~----~gi~~~~----~~g~EADD~ia~la~~~ 121 (284)
.|+-+. . +| ..|..++.+ +..-+.. -++.++. +|| |++-=|-...|..
T Consensus 110 ~~~~~~~~~g~~~~~~~~fdsn~ITPGT~FM~~L~~~L~~~i~~k~~~d~~w~~~~vi~S~~~vPG-EGEhKIm~~IR~~ 188 (1155)
T 3pie_A 110 KALQKAIENGDELPKGEPFDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPG-EGQHKIMDYIRAI 188 (1155)
T ss_pred HHHHHHHhcCCcCCcccccccccccCCcHHHHHHHHHHHHHHHHHhhCCcCccccEEEEeCCCCCC-ccHHHHHHHHHHh
Confidence 111110 0 12 123333332 2222211 1344543 578 9998888888765
Q ss_pred hHh----CCCeEEEEcCCCcccccc----CCCeEEEe-C------c-----------EeeeHhHHHH----Hh-------
Q psy14489 122 VTK----HNLKVIISTNDKDMAQLV----SNKIALIN-N------N-----------KIHDRTTIIS----RF------- 164 (284)
Q Consensus 122 ~~~----~~~~v~I~S~DkDl~ql~----~~~v~~~~-~------~-----------~~~~~~~~~~----~~------- 164 (284)
+.+ ++....|++.|.||..|. .+++.+++ . . ..++..-+.| ++
T Consensus 189 r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~~~~~~~~~~~~~f~~l~i~~LREyL~~ef~~~~~~~ 268 (1155)
T 3pie_A 189 RAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLETQNFFLLHLSILREYLALEFEEITDSV 268 (1155)
T ss_pred ccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCcccccccccccCCeEEEEHHHHHHHHHHHHHhhcccc
Confidence 431 355899999999998863 35777765 1 0 1233322221 11
Q ss_pred --CCChh----HHHhhhhhcCCCCCCCCCCCccChh
Q psy14489 165 --GVSPE----KIVDYFSLIGDMSDNLPGVKKIGPK 194 (284)
Q Consensus 165 --G~~p~----q~~~~~~L~GD~sDni~Gv~giG~k 194 (284)
...-+ -|+.+|.|+| .|.+|.+|.+...
T Consensus 269 ~~~~d~ERiiDDfVflcf~vG--NDFLPhlP~l~I~ 302 (1155)
T 3pie_A 269 QFEYDFERVLDDFIFVLFTIG--NDFLPNLPDLHLK 302 (1155)
T ss_pred CCCccHhHhhcceeeehhhhC--cccCCCCCccCcC
Confidence 11223 3556899999 8999999988654
No 22
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=95.25 E-value=0.61 Score=47.86 Aligned_cols=143 Identities=13% Similarity=0.139 Sum_probs=80.4
Q ss_pred EEEEecchHHHHHhccCCCccCCCCcchhHHHHHHHHHHHHHHhcCCCE-EEEEEeCCCCc----------cccccCch-
Q psy14489 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATY-IACIFDAKGKN----------FRNILYPS- 72 (284)
Q Consensus 5 ~llIDg~~l~~r~~~a~~~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~-~i~~fD~~~~~----------~R~~l~~~- 72 (284)
-|.||-|+++|.+.+.... ........-+...+.-+.+++...+|.. +++|+||..|. ||...-..
T Consensus 54 nLYlDmNgIIH~c~h~~~~--~~~~te~e~~~~If~yid~l~~~vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~ 131 (899)
T 3fqd_A 54 NLYLDMNGIVHPCSHPEDR--PAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAAL 131 (899)
T ss_dssp EEEEETHHHHHHHHSCSSS--CCCCSHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecchhhhhhcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHcCcceeEEEeecCCCCchHHHHHHHHHHHhhhhhhh
Confidence 5789999999999886421 0011111223334445555666666744 57999996542 32211000
Q ss_pred -----------h-hhCC--------CC-------CC-----hhHHHHHHH-HHHHHHh----cCCcEEe----eCCchHH
Q psy14489 73 -----------Y-KATR--------KK-------MP-----YNLILQINL-IHQMVKA----IGWPILI----IKGVEAD 111 (284)
Q Consensus 73 -----------Y-Ka~R--------~~-------~p-----~~l~~q~~~-i~~~l~~----~gi~~~~----~~g~EAD 111 (284)
- +.+. .. +| ..|..++.+ |..-+.. -++.++. +|| |++
T Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~fDsN~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vPG-EGE 210 (899)
T 3fqd_A 132 KEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPG-EGE 210 (899)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHSCCCCCGGGSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSCS-CHH
T ss_pred hHHHHHHHHHHHHhcCCCCccccccccCCCcCccCCccHHHHHHHHHHHHHHHHHhhcCcccccceEEEeCCCCCC-ccH
Confidence 0 1110 00 12 124444442 3322221 2455655 578 999
Q ss_pred HHHHHHHHHhhHh----CCCeEEEEcCCCcccccc----CCCeEEEe
Q psy14489 112 DVIGTLAKQAVTK----HNLKVIISTNDKDMAQLV----SNKIALIN 150 (284)
Q Consensus 112 D~ia~la~~~~~~----~~~~v~I~S~DkDl~ql~----~~~v~~~~ 150 (284)
-=|-...|..+.+ ++...+|++.|.||..|. .+++.+++
T Consensus 211 HKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILR 257 (899)
T 3fqd_A 211 HKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLR 257 (899)
T ss_dssp HHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEe
Confidence 8888887764432 346899999999998863 46888876
No 23
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=94.21 E-value=0.0082 Score=52.33 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=0.0
Q ss_pred CCCCCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 184 NLPGVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 184 ni~Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
-+-||||||+++|.+|++.|||+++|.++
T Consensus 174 ~L~~IpGIG~k~ak~Ll~~FGSl~~i~~A 202 (226)
T 3c65_A 174 VLDDIPGVGEKRKKALLNYFGSVKKMKEA 202 (226)
T ss_dssp -----------------------------
T ss_pred cccccCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 35789999999999999999999998764
No 24
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=93.23 E-value=0.057 Score=45.76 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=19.9
Q ss_pred CCccChhhHHHHHHhcCC---HHHHH
Q psy14489 188 VKKIGPKTAVKLLNQYNS---LENII 210 (284)
Q Consensus 188 v~giG~ktA~~LL~~~gs---le~i~ 210 (284)
|+|||||+|..+|+.||+ .+.|.
T Consensus 77 v~GIGpk~A~~iL~~f~~~~l~~aI~ 102 (191)
T 1ixr_A 77 VSGVGPKVALALLSALPPRLLARALL 102 (191)
T ss_dssp SSCCCHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhCChHHHHHHHH
Confidence 899999999999999999 44454
No 25
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=92.91 E-value=0.97 Score=37.96 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=54.8
Q ss_pred cEEEEecchHHHHHhccCCCccCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCccccccCchhhhCCCCCC-h
Q psy14489 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMP-Y 82 (284)
Q Consensus 4 ~~llIDg~~l~~r~~~a~~~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~~i~~fD~~~~~~R~~l~~~YKa~R~~~p-~ 82 (284)
+.++|||+|++|.. +. .+.....+|. ..+..+ +..+. ..+++|+ ++||++.. |+..+ .
T Consensus 25 R~IVIDGsNVA~~~--g~-----~~~Fs~rgI~---~aV~yf-~~rGh-~~v~Vfv---P~~r~~~~------~~~~~~~ 83 (185)
T 3v32_B 25 RPVVIDGSNVAMSH--GN-----KEVFSCRGIL---LAVNWF-LERGH-TDITVFV---PSWRKEQP------RPDVPIT 83 (185)
T ss_dssp CCEEEEHHHHHHHH--TT-----TTSEEHHHHH---HHHHHH-HHTTC-CCEEEEE---EGGGGSCC------CTTSCEE
T ss_pred CeEEEeCHHHHhhh--CC-----CCCcCHHHHH---HHHHHH-HHcCC-CceEEEe---chHhhhcc------cccCCCC
Confidence 57899999999855 21 1222333322 233333 33343 3366676 57876531 22211 1
Q ss_pred hHHHHHHHHHHHHHhcCCcEEeeCCc--------hHHHHHHHHHHHhhHhCCCeEEEEcCCC
Q psy14489 83 NLILQINLIHQMVKAIGWPILIIKGV--------EADDVIGTLAKQAVTKHNLKVIISTNDK 136 (284)
Q Consensus 83 ~l~~q~~~i~~~l~~~gi~~~~~~g~--------EADD~ia~la~~~~~~~~~~v~I~S~Dk 136 (284)
+. +.+.+ |...|+-++...+. .+|-.|..+|... ..+|||+|+
T Consensus 84 d~----~~L~~-L~~~g~l~~TPs~~~~g~~~~~ydD~~il~~A~~~------~g~IVSND~ 134 (185)
T 3v32_B 84 DQ----HILRE-LEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYES------DGIVVSNDT 134 (185)
T ss_dssp CT----HHHHH-HHHTTCEEEECCCC-------CCHHHHHHHHHHHT------TCEEECSCC
T ss_pred CH----HHHHH-HHHCCCEEECCCcccCCCcccCccHHHHHHHHHHc------CCEEEeCcc
Confidence 11 11222 33468877765553 4777788888752 357999884
No 26
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=92.31 E-value=0.52 Score=38.38 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=33.8
Q ss_pred HHHHHHhcCCcEEeeCC---------chHHHHHHHHHHHhhHhCCCeEEEEcCCCccccccC
Q psy14489 91 IHQMVKAIGWPILIIKG---------VEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVS 143 (284)
Q Consensus 91 i~~~l~~~gi~~~~~~g---------~EADD~ia~la~~~~~~~~~~v~I~S~DkDl~ql~~ 143 (284)
..+.|...|+.++..|- =.+|=-|+.=+-.... .-+.++++|+|.||..++.
T Consensus 66 ~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~-~~d~~vLvSgD~DF~plv~ 126 (165)
T 2qip_A 66 FHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAP-DVDRVILVSGDGDFSLLVE 126 (165)
T ss_dssp HHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGG-GCSEEEEECCCGGGHHHHH
T ss_pred HHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhc-cCCEEEEEECChhHHHHHH
Confidence 44566778997664331 1456445444433333 5678999999999999863
No 27
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=92.01 E-value=0.1 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=20.7
Q ss_pred CCccChhhHHHHHHhcCC---HHHHHH
Q psy14489 188 VKKIGPKTAVKLLNQYNS---LENIIN 211 (284)
Q Consensus 188 v~giG~ktA~~LL~~~gs---le~i~~ 211 (284)
|+|||||+|..+|+.||+ .+.|.+
T Consensus 78 V~GIGpk~A~~iL~~f~~~~l~~aI~~ 104 (203)
T 1cuk_A 78 TNGVGPKLALAILSGMSAQQFVNAVER 104 (203)
T ss_dssp SSSCCHHHHHHHHHHSCHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHhhCChHHHHHHHHh
Confidence 899999999999999999 555543
No 28
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=91.82 E-value=0.08 Score=50.00 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCCccChhhHHHHHHhcCCHHHHHHhh
Q psy14489 187 GVKKIGPKTAVKLLNQYNSLENIINNA 213 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~gsle~i~~~~ 213 (284)
.||||||.+|..||++|||++.+..+-
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe~Vm~At 498 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYSKVREAG 498 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHHHHHHSC
T ss_pred ccCCCCHHHHHHHHHHhcCHHHHHhCC
Confidence 379999999999999999999998753
No 29
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=90.33 E-value=0.094 Score=41.80 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=28.8
Q ss_pred CCCccChhhHHHHHHh--cCCHHHHHHhhhhhhhhhhccHHHhHhhch
Q psy14489 187 GVKKIGPKTAVKLLNQ--YNSLENIINNANNIKGVIGKNLRFALNWLP 232 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~--~gsle~i~~~~~~~~~~~~~~l~~~~~~~~ 232 (284)
-+|||||++|.++++. |.|+|++++ +.-+..+..+.++++++++-
T Consensus 67 ~LpGiGp~~A~~II~~GpF~svedL~~-V~GIg~k~~e~l~~~~~~~t 113 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVKNAPYESVEDVLN-IPGLTERQKQILRENLEHFT 113 (134)
T ss_dssp GSTTCTHHHHHHHHHTCCCSSGGGGGG-CTTCCHHHHHHHHHHHTTEE
T ss_pred HCCCCCHHHHHHHHHcCCCCCHHHHHh-CCCCCHHHHHHHHHhhccee
Confidence 3689999999999974 667777642 33333344455665555433
No 30
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=89.49 E-value=1.8 Score=37.38 Aligned_cols=101 Identities=16% Similarity=0.215 Sum_probs=53.0
Q ss_pred cEEEEecchHHHHHhccCCCccCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCccccccCchhhhCCCCCC-h
Q psy14489 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMP-Y 82 (284)
Q Consensus 4 ~~llIDg~~l~~r~~~a~~~l~~~~g~~t~ai~gf~~~l~~l~~~~~~~~~i~~fD~~~~~~R~~l~~~YKa~R~~~p-~ 82 (284)
+.++|||+|++|.. +. .+..... |....+.- ++..+. ..+++|+ ++||++.. |+..+ .
T Consensus 25 R~IVIDGsNVA~~~--g~-----~~~Fs~r---gI~~aV~y-F~~RGh-~~V~Vfv---P~~r~~~~------~~~~~~~ 83 (223)
T 3v33_A 25 RPVVIDGSNVAMSH--GN-----KEVFSCR---GILLAVNW-FLERGH-TDITVFV---PSWRKEQP------RPDVPIT 83 (223)
T ss_dssp CCEEEEHHHHHHHS--SS-----TTSEEHH---HHHHHHHH-HHTTTC-CCEEEEE---EGGGGSCC------CTTSCEE
T ss_pred CeEEEeCHHHHhhh--CC-----CCCcCHH---HHHHHHHH-HHHcCC-CceEEEe---chhhhccc------cccCCCC
Confidence 57899999999843 21 1222222 32223333 333343 3366675 57886531 22211 1
Q ss_pred hHHHHHHHHHHHHHhcCCcEEeeCCc--------hHHHHHHHHHHHhhHhCCCeEEEEcCCC
Q psy14489 83 NLILQINLIHQMVKAIGWPILIIKGV--------EADDVIGTLAKQAVTKHNLKVIISTNDK 136 (284)
Q Consensus 83 ~l~~q~~~i~~~l~~~gi~~~~~~g~--------EADD~ia~la~~~~~~~~~~v~I~S~Dk 136 (284)
+. +.+.+ |...|+-++...+. -+|-.|..+|... ..+|||+|.
T Consensus 84 d~----~~L~~-L~k~g~L~~TPs~~v~G~r~~sydD~~iL~~A~~~------~g~IVSND~ 134 (223)
T 3v33_A 84 DQ----HILRE-LEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYES------DGIVVSNDT 134 (223)
T ss_dssp ST----HHHHH-HHHTTCEEEECEEEETTEEEECCHHHHHHHHHHHT------TCEEECSCC
T ss_pred cH----HHHHH-HHHCCCEEECCCCCcCCccccccchHHHHHHHHHc------CCEEEeCcc
Confidence 10 11222 33468866654442 3677788888752 357999884
No 31
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=88.34 E-value=0.26 Score=49.38 Aligned_cols=42 Identities=19% Similarity=0.385 Sum_probs=31.2
Q ss_pred CCCccChhhHHHHHHhcCCHHHHHHhh-hhh------hhhhhccHHHhH
Q psy14489 187 GVKKIGPKTAVKLLNQYNSLENIINNA-NNI------KGVIGKNLRFAL 228 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~gsle~i~~~~-~~~------~~~~~~~l~~~~ 228 (284)
||||||+++|..|++.|||++++.++- +++ ..++.+++.++.
T Consensus 516 gi~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp TCTTCCHHHHHHHHHHHCSHHHHHTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHcCCHHHHHhCCHHHHhhcCCCCHHHHHHHHHHH
Confidence 899999999999999999999986543 222 225555666543
No 32
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=87.79 E-value=0.11 Score=45.64 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=0.0
Q ss_pred CCCCCCccChhhHHHHHHh-cCCHHHHH
Q psy14489 184 NLPGVKKIGPKTAVKLLNQ-YNSLENII 210 (284)
Q Consensus 184 ni~Gv~giG~ktA~~LL~~-~gsle~i~ 210 (284)
-+-.|||||||+|.+|++. |+|+++|.
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~gf~sve~L~ 43 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREAGFESVEDVR 43 (241)
T ss_dssp ----------------------------
T ss_pred HHhcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 4567899999999999998 99999985
No 33
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=86.64 E-value=0.42 Score=47.85 Aligned_cols=26 Identities=15% Similarity=0.484 Sum_probs=23.7
Q ss_pred CCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 187 GVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
||||||+++|.+|++.|||++++.++
T Consensus 511 GI~~VG~~~Ak~La~~Fgsl~~l~~A 536 (667)
T 1dgs_A 511 GLPGVGEVLARNLARRFGTMDRLLEA 536 (667)
T ss_dssp TCSSCCHHHHHHHHHTTSBHHHHTTC
T ss_pred ccCCccHHHHHHHHHHcCCHHHHHhC
Confidence 89999999999999999999998643
No 34
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=85.54 E-value=0.39 Score=44.72 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=24.4
Q ss_pred CCccChhhHHHHHHhcCCHHHHHHhh
Q psy14489 188 VKKIGPKTAVKLLNQYNSLENIINNA 213 (284)
Q Consensus 188 v~giG~ktA~~LL~~~gsle~i~~~~ 213 (284)
||++|++.|.+|+.+|||+++|+++-
T Consensus 320 IPrl~~~iae~Lv~~FGsLq~Il~AS 345 (377)
T 3c1y_A 320 VARIPLSIGYNVVRMFKTLDQISKAS 345 (377)
T ss_dssp TSCCCHHHHHHHHHHHCSHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhCC
Confidence 89999999999999999999999863
No 35
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=84.99 E-value=0.17 Score=50.06 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=0.0
Q ss_pred CCCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 186 PGVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
=||||||+++|..|++.|||++++.++
T Consensus 532 LGIp~VG~~~ak~La~~Fgsle~L~~A 558 (615)
T 3sgi_A 532 LSIRHVGPTAARALATEFGSLDAIAAA 558 (615)
T ss_dssp ---------------------------
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 478999999999999999999998865
No 36
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=84.31 E-value=0.71 Score=45.31 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=23.4
Q ss_pred CCCCccChhhHHHHHHh-cCCHHHHHHhh
Q psy14489 186 PGVKKIGPKTAVKLLNQ-YNSLENIINNA 213 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~-~gsle~i~~~~ 213 (284)
-.|+|||||+|.++++. +.|++++..++
T Consensus 100 ~~v~GVGpk~A~~i~~~G~~s~edL~~a~ 128 (578)
T 2w9m_A 100 LGVRGLGPKKIRSLWLAGIDSLERLREAA 128 (578)
T ss_dssp TTSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHcCCCCHHHHHHHH
Confidence 46899999999999986 56899988764
No 37
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=83.94 E-value=0.62 Score=42.65 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=22.9
Q ss_pred CCCCCccChhhHHHHHHhcC--CHHHHHHh
Q psy14489 185 LPGVKKIGPKTAVKLLNQYN--SLENIINN 212 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~~~g--sle~i~~~ 212 (284)
.-.|||||||||.+|.++ | |++++.++
T Consensus 100 l~~V~GiGpk~a~~l~~~-Gi~tledL~~a 128 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFVDE-GIKTLEDLRKN 128 (335)
T ss_dssp HTTSTTCCHHHHHHHHHT-TCCSHHHHHTC
T ss_pred HhCCCCCCHHHHHHHHHc-CCCCHHHHHHh
Confidence 356999999999999987 6 89998764
No 38
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=80.74 E-value=1 Score=38.29 Aligned_cols=47 Identities=21% Similarity=0.402 Sum_probs=30.9
Q ss_pred hhHHHhhhhhcCC---CCCCCCCCCccChhhHHHHHHh-----cCCHHHHHHhhh
Q psy14489 168 PEKIVDYFSLIGD---MSDNLPGVKKIGPKTAVKLLNQ-----YNSLENIINNAN 214 (284)
Q Consensus 168 p~q~~~~~~L~GD---~sDni~Gv~giG~ktA~~LL~~-----~gsle~i~~~~~ 214 (284)
.+.|+++..-+|- +..-+..+||||+++|.+++.. |.|+|++...+.
T Consensus 114 E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~ 168 (205)
T 2i5h_A 114 EKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVK 168 (205)
T ss_dssp HHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHST
T ss_pred hhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcC
Confidence 4556665433331 2233456899999999999973 789999876554
No 39
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=80.61 E-value=0.84 Score=42.19 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.2
Q ss_pred CCCCccChhhHHHHHHhcC--CHHHHHH
Q psy14489 186 PGVKKIGPKTAVKLLNQYN--SLENIIN 211 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~~g--sle~i~~ 211 (284)
-.|+|||||||.+|.++ | |++++..
T Consensus 105 ~~I~GvG~kta~~l~~~-Gi~tledL~~ 131 (360)
T 2ihm_A 105 TQVFGVGVKTANRWYQE-GLRTLDELRE 131 (360)
T ss_dssp HTSTTCCHHHHHHHHHT-TCCSHHHHHT
T ss_pred hCCCCCCHHHHHHHHHc-CCCCHHHHHh
Confidence 36899999999999987 5 8898873
No 40
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=80.47 E-value=0.7 Score=39.63 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=17.1
Q ss_pred CCccChhhHHHHHHhcCC
Q psy14489 188 VKKIGPKTAVKLLNQYNS 205 (284)
Q Consensus 188 v~giG~ktA~~LL~~~gs 205 (284)
|+|||||+|..+|..|+.
T Consensus 93 v~GIGpk~A~~Ils~~~~ 110 (212)
T 2ztd_A 93 VSGVGPRLAMAALAVHDA 110 (212)
T ss_dssp STTCCHHHHHHHHHHSCH
T ss_pred cCCcCHHHHHHHHHhCCH
Confidence 999999999999999887
No 41
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=79.56 E-value=1.2 Score=43.87 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=18.4
Q ss_pred CCCccChhhHHHHHHhcCCHHHHHHh
Q psy14489 187 GVKKIGPKTAVKLLNQYNSLENIINN 212 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~gsle~i~~~ 212 (284)
|||+||+++|..|.+.|+|++++.++
T Consensus 516 GI~~vG~~~a~~La~~f~sl~~l~~a 541 (586)
T 4glx_A 516 GIREVGEATAAGLAAYFGTLEALEAA 541 (586)
T ss_dssp TCTTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred CCCchhHHHHHHHHHHcCCHHHHHcc
Confidence 56777777777777777777776653
No 42
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=79.55 E-value=0.73 Score=34.60 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=18.8
Q ss_pred CCCCCccChhhHHHHHHh--cCCHHHH
Q psy14489 185 LPGVKKIGPKTAVKLLNQ--YNSLENI 209 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~~--~gsle~i 209 (284)
+..+||||+++|.++++. |.|++++
T Consensus 28 L~~lpGIG~~~A~~IV~~GpF~s~edL 54 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVKNAPYESVEDV 54 (97)
T ss_dssp GGGSTTCTTHHHHHHHHHCCCSSGGGG
T ss_pred HhHCCCCCHHHHHHHHHcCCCCCHHHH
Confidence 345899999999999983 4455554
No 43
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=79.36 E-value=1.1 Score=40.90 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCCCccChhhHHHHHHh-cCCHHHHHHhh
Q psy14489 186 PGVKKIGPKTAVKLLNQ-YNSLENIINNA 213 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~-~gsle~i~~~~ 213 (284)
..|||||||||.+|.++ +.|++++.++.
T Consensus 99 ~~v~GiG~k~a~~l~~~Gi~tledL~~a~ 127 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQQGFRSLEDIRSQA 127 (335)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred hcCCCcCHHHHHHHHHcCCCCHHHHHHHh
Confidence 37999999999999886 33899987754
No 44
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=77.50 E-value=1.4 Score=43.13 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCCccChhhHHHHHHh--cCCHHHHHHhh
Q psy14489 187 GVKKIGPKTAVKLLNQ--YNSLENIINNA 213 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~--~gsle~i~~~~ 213 (284)
+|+|||||+|.+++.. +.|++++..++
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~ 125 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAAL 125 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4889999999999997 57899998766
No 45
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=77.14 E-value=1.5 Score=40.96 Aligned_cols=40 Identities=23% Similarity=0.526 Sum_probs=31.3
Q ss_pred hHHHhhhhhcCCCCCCCCCCCccChhhHHHHHHhcCCHHHHHHhhhhh
Q psy14489 169 EKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216 (284)
Q Consensus 169 ~q~~~~~~L~GD~sDni~Gv~giG~ktA~~LL~~~gsle~i~~~~~~~ 216 (284)
++...+..|. -+||+|++++.+|++.|||.++++++...+
T Consensus 20 ~e~~~wL~L~--------~~~gvG~~~~~~Ll~~fgs~~~~~~a~~~~ 59 (382)
T 3maj_A 20 AQRIDWMRLI--------RAENVGPRTFRSLINHFGSARAALERLPEL 59 (382)
T ss_dssp HHHHHHHHHH--------TSTTCCHHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------cCCCCCHHHHHHHHHHcCCHHHHHHcCHHH
Confidence 4445555564 377999999999999999999999876543
No 46
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=75.65 E-value=1.6 Score=40.67 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCCccChhhHHHHHHhcC--CHHHHHH
Q psy14489 187 GVKKIGPKTAVKLLNQYN--SLENIIN 211 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~g--sle~i~~ 211 (284)
.|+|||||||.+|.++ | |+|++.+
T Consensus 125 ~I~GvGpk~a~~ly~~-Gi~tledL~~ 150 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRM-GFRTLSKIQS 150 (381)
T ss_dssp TSTTCCHHHHHHHHHT-TCCSHHHHHH
T ss_pred ccCCCCHHHHHHHHHc-CCCcHHHHHh
Confidence 6899999999999987 5 8888875
No 47
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}
Probab=73.52 E-value=13 Score=30.25 Aligned_cols=43 Identities=21% Similarity=0.398 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+.... .|++|+|++
T Consensus 100 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~-~Gy~V~vv~ 142 (182)
T 3eef_A 100 NLDMILRANGIDTVVLIGLDADICVRHTAADALY-RNYRIIVVE 142 (182)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred CHHHHHHhcCCCeEEEEEeccCHHHHHHHHHHHH-CCCEEEEeh
Confidence 4667788899999999999999999999998888 899998875
No 48
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=73.29 E-value=1.5 Score=30.64 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.5
Q ss_pred CCCCccChhhHHHHHHhc
Q psy14489 186 PGVKKIGPKTAVKLLNQY 203 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~~ 203 (284)
-.+||||+++|.++++.+
T Consensus 30 ~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 30 MALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TTSTTCCHHHHHHHHHTC
T ss_pred HhCCCCCHHHHHHHHHHc
Confidence 457899999999999965
No 49
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=69.54 E-value=1.5 Score=32.47 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=15.5
Q ss_pred CCCCCccChhhHHHHHHhc
Q psy14489 185 LPGVKKIGPKTAVKLLNQY 203 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~~~ 203 (284)
+..|||||+++|.++++.+
T Consensus 42 L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 42 LRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHHSTTCCHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHH
Confidence 3568899999999999865
No 50
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=68.16 E-value=3.2 Score=37.12 Aligned_cols=30 Identities=10% Similarity=0.361 Sum_probs=26.9
Q ss_pred CCCccChhhHHHHHHhcCCHHHHHHhhhhh
Q psy14489 187 GVKKIGPKTAVKLLNQYNSLENIINNANNI 216 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~gsle~i~~~~~~~ 216 (284)
-||||+++.|..++++|+|+..++.+..+.
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~ 270 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQAYDKC 270 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHHHHHHC
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHHHHHhc
Confidence 488999999999999999999999887654
No 51
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=62.52 E-value=3.2 Score=35.47 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=22.0
Q ss_pred hhcCCCCCCCCCCCccChhhHHHHHHhcCC
Q psy14489 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNS 205 (284)
Q Consensus 176 ~L~GD~sDni~Gv~giG~ktA~~LL~~~gs 205 (284)
++.+| ..-+..|||||+|||.+++.++..
T Consensus 117 I~~~d-~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 117 LADGN-VAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHTTC-HHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred HHhCC-HHHHhhCCCCCHHHHHHHHHHHHH
Confidence 44444 345678999999999999987654
No 52
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=62.08 E-value=3.1 Score=34.93 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.1
Q ss_pred CCCCCCCCCccChhhHHHHHHhcC
Q psy14489 181 MSDNLPGVKKIGPKTAVKLLNQYN 204 (284)
Q Consensus 181 ~sDni~Gv~giG~ktA~~LL~~~g 204 (284)
+.+-+..|||||+|||.+++.++.
T Consensus 105 d~~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 105 DARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHH
Confidence 355678999999999999988764
No 53
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=61.80 E-value=3.3 Score=35.34 Aligned_cols=17 Identities=47% Similarity=0.601 Sum_probs=13.5
Q ss_pred CCCCCccChhhHHHHHH
Q psy14489 185 LPGVKKIGPKTAVKLLN 201 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~ 201 (284)
+.-.||||+|+|.++--
T Consensus 28 l~~LPGIG~KsA~RlA~ 44 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLAF 44 (212)
T ss_dssp HHTSTTCCHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHH
Confidence 35689999999988743
No 54
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=61.50 E-value=3.7 Score=34.74 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCEEEEEEeCCCCccccccCchhhhCCCCCChhHHHHHHHHHHHHHhcCCcEEeeCC-chHHHHHHH
Q psy14489 38 TIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKG-VEADDVIGT 116 (284)
Q Consensus 38 f~~~l~~l~~~~~~~~~i~~fD~~~~~~R~~l~~~YKa~R~~~p~~l~~q~~~i~~~l~~~gi~~~~~~g-~EADD~ia~ 116 (284)
+...+.++.+.+ .++++..-+.... ..| .-.|+.+...+ ..+.-..|++++...+ .|+=.+++.
T Consensus 68 l~~Q~~~l~~~~--~~~~lliE~d~~~------~~~----~~~~~~i~~~l---~~~~~~~~~~vi~t~s~~eta~~l~~ 132 (219)
T 2bgw_A 68 LFEQASRLAEHY--ETVFIIVEGPPVP------RRY----RGRERSLYAAM---AALQLDYGIRLMNTMDPKGTALVIES 132 (219)
T ss_dssp HHHHHHHHHHHC--SEEEEEEESCSSC------GGG----TTTHHHHHHHH---HHHHHHSCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCcEEEEEecCcc------ccc----cCCHHHHHHHH---HHHHHHCCceEEEcCCHHHHHHHHHH
Confidence 344555566664 4555555442221 233 12255555433 2333346999988754 555678888
Q ss_pred HHHHh
Q psy14489 117 LAKQA 121 (284)
Q Consensus 117 la~~~ 121 (284)
+++..
T Consensus 133 l~~~~ 137 (219)
T 2bgw_A 133 LARLS 137 (219)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87754
No 55
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=51.37 E-value=5.1 Score=34.55 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=13.5
Q ss_pred CCCCCccChhhHHHHHH
Q psy14489 185 LPGVKKIGPKTAVKLLN 201 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~ 201 (284)
+.-.||||+|+|..+--
T Consensus 14 l~~LPGIG~KSA~RlA~ 30 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLAF 30 (228)
T ss_dssp HHTSTTCCHHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHHH
Confidence 34679999999988744
No 56
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=51.17 E-value=15 Score=30.56 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 116 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~-~Gy~V~vv~ 158 (204)
T 3hu5_A 116 ECDMLLRRRGVDTLLVSGTQYPNCIRGTAVDAFA-LDYDVVVVT 158 (204)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred CHHHHHHhCCCCeEEEeeeccchHHHHHHHHHHH-CCCEEEEeh
Confidence 4667888899999999999999999999998887 899999886
No 57
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=50.94 E-value=15 Score=29.63 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+.+-|+...+ .|++|+|++
T Consensus 110 ~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~da~~-~Gy~v~vv~ 152 (180)
T 1im5_A 110 DLAKILRGNGVKRVYICGVATEYCVRATALDALK-HGFEVYLLR 152 (180)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred CHHHHHHhCCCCEEEEEEeecCHHHHHHHHHHHH-CCCEEEEeh
Confidence 3667788899999999999999999999998888 899988875
No 58
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3
Probab=49.50 E-value=17 Score=29.76 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 122 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~-~Gy~v~vv~ 164 (199)
T 1j2r_A 122 DLELQLRRRGIDTIVLCGISTNIGVESTARNAWE-LGFNLVIAE 164 (199)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred CHHHHHHHCCCCEEEEEeeeccHHHHHHHHHHHH-CCCEEEEeh
Confidence 3567788899999999999999999999998887 899988875
No 59
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=48.96 E-value=6.7 Score=33.14 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=20.6
Q ss_pred hcCCCCCCCCCCCccChhhHHHHHHhc
Q psy14489 177 LIGDMSDNLPGVKKIGPKTAVKLLNQY 203 (284)
Q Consensus 177 L~GD~sDni~Gv~giG~ktA~~LL~~~ 203 (284)
+.-.+.+-+..|||||+|||.+++.++
T Consensus 102 I~~~d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 102 VEREEVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 333335567899999999999998765
No 60
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens}
Probab=48.84 E-value=18 Score=30.04 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+.... .|++|+|++
T Consensus 110 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~-~Gy~V~vv~ 152 (204)
T 3hb7_A 110 DLDLYLKEEGIDTVVLTGVWTNVCVRSTATDALA-NAYKVITLS 152 (204)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred cHHHHHHHCCCCEEEEEeecccHHHHHHHHHHHH-CCCEEEEec
Confidence 4667788899999999999999999999998888 899998885
No 61
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV}
Probab=48.80 E-value=16 Score=31.04 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 129 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~-~Gy~V~vv~ 171 (233)
T 3irv_A 129 DLDTVLRARDVDTIIVCGTVTNVCCETTIRDGVH-REYKVIALS 171 (233)
T ss_dssp THHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred cHHHHHHhCCCCeEEEEeecccHHHHHHHHHHHH-CCCEEEEec
Confidence 4667888899999999999999999999998888 899999875
No 62
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=48.77 E-value=9.5 Score=37.14 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=18.9
Q ss_pred CCCCCccChhhHHHHHHhcCCHHH
Q psy14489 185 LPGVKKIGPKTAVKLLNQYNSLEN 208 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~~~gsle~ 208 (284)
+..+||||+|||.+++......++
T Consensus 130 l~~~~GiG~k~a~~i~~~l~~~~~ 153 (575)
T 3b0x_A 130 LTRLKGFGPKRAERIREGLALAQA 153 (575)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHH
Confidence 788999999999999776544433
No 63
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=48.00 E-value=7.5 Score=33.23 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=15.6
Q ss_pred CCCccChhhHHHHHHhcCC
Q psy14489 187 GVKKIGPKTAVKLLNQYNS 205 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~gs 205 (284)
.+||||+|||--.|..+|-
T Consensus 134 ~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 134 NAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HSTTCCHHHHHHHHHTTTC
T ss_pred hCCCCCHHHHHHHHHHcCC
Confidence 6789999999888865665
No 64
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A*
Probab=47.86 E-value=19 Score=29.82 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 132 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~-~Gy~V~vv~ 174 (207)
T 1nf9_A 132 DLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYS-NDIQPFLVA 174 (207)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred cHHHHHHHcCCCEEEEEeeecChHHHHHHHHHHH-CCCEEEEeC
Confidence 3567788899999999999999877777888777 899988875
No 65
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=46.95 E-value=3.7 Score=36.70 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=28.0
Q ss_pred CCCCCccChhhHHHHHHhcCCHHHHHHhhhhh
Q psy14489 185 LPGVKKIGPKTAVKLLNQYNSLENIINNANNI 216 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~~~gsle~i~~~~~~~ 216 (284)
+--|||||+++|..+++.|+|+..++++..+.
T Consensus 235 L~~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~~ 266 (307)
T 2zix_A 235 LMQVRGVSGEKAAALVDRYSTPASLLAAYDAC 266 (307)
T ss_dssp TTCSTTCCSTTTTTSSSSSCSHHHHHHHHHCC
T ss_pred HHhccCCCHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 45689999999999999999999998887653
No 66
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=46.72 E-value=18 Score=36.01 Aligned_cols=27 Identities=15% Similarity=0.269 Sum_probs=22.1
Q ss_pred CCCccChhhHHHHHHhcC--CHHHHHHhh
Q psy14489 187 GVKKIGPKTAVKLLNQYN--SLENIINNA 213 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~g--sle~i~~~~ 213 (284)
.|+|+|+|++.+|.++.+ ++.+|+...
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~ 473 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLR 473 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGC
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcC
Confidence 478999999999999865 777777643
No 67
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=46.50 E-value=8.4 Score=32.81 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=14.9
Q ss_pred CCCccChhhHHHHHHhcCC
Q psy14489 187 GVKKIGPKTAVKLLNQYNS 205 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~gs 205 (284)
.+||||+|||--.|...|.
T Consensus 129 ~LpGVG~KTA~~vL~~~g~ 147 (214)
T 3fhf_A 129 NIKGIGYKEASHFLRNVGY 147 (214)
T ss_dssp HSTTCCHHHHHHHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHcCC
Confidence 6889999999887765433
No 68
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0
Probab=46.03 E-value=20 Score=29.64 Aligned_cols=43 Identities=14% Similarity=0.311 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 116 ~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~-~G~~v~v~~ 158 (199)
T 3txy_A 116 DLDVQLRRRGITDIVLTGIATNIGVESTAREAYE-NNYNVVVVS 158 (199)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred cHHHHHHhCCCCEEEEEeeccCHHHHHHHHHHHH-CCCEEEEec
Confidence 4667888899999999999999999999988887 899988885
No 69
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=45.80 E-value=17 Score=32.38 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=43.6
Q ss_pred CccChhhHHHHHHhcCCHHHHHHhhhhhhhhhhccHHHhHhhchhhhhhhhhccccCCCCCcCCCccccccCCCCHHHHH
Q psy14489 189 KKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLM 268 (284)
Q Consensus 189 ~giG~ktA~~LL~~~gsle~i~~~~~~~~~~~~~~l~~~~~~~~l~~~L~~l~~d~~~~~~~~~~~~~l~~~~~~~~~l~ 268 (284)
.|+|.|||-.||..||+.+.+-+-..+.. .++|..-..--. +-|-.+ +|--.+ -+.....|.+...
T Consensus 417 egvgrktaerllrafgnpervkqlarefe---ieklasvegvge--rvlrsl---vpgyas------lisirgidrerae 482 (519)
T 2csb_A 417 EGVGRKTAERLLRAFGNPERVKQLAREFE---IEKLASVEGVGE--RVLRSL---VPGYAS------LISIRGIDRERAE 482 (519)
T ss_dssp TTCCHHHHHHHHHHHSSHHHHHHHHHTTC---HHHHHTSTTCSH--HHHHHH---STTHHH------HHTSTTCCHHHHH
T ss_pred cccchhHHHHHHHHhCCHHHHHHHHHHHh---HHHHhhccchHH--HHHHHh---ccchhh------heeeccccHHHHH
Confidence 59999999999999999988744332221 011111000000 001111 221111 2345678899999
Q ss_pred HHHHHcCchhHH
Q psy14489 269 QLFNKYKLNKLN 280 (284)
Q Consensus 269 ~~~~~~~~~~~~ 280 (284)
.++++||=.+-.
T Consensus 483 rllkkyggyskv 494 (519)
T 2csb_A 483 RLLKKYGGYSKV 494 (519)
T ss_dssp HHHHHHTSHHHH
T ss_pred HHHHHhCChhHH
Confidence 999999865544
No 70
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=45.42 E-value=8.9 Score=32.23 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=15.5
Q ss_pred CCCCccChhhHHHHHHhcCC
Q psy14489 186 PGVKKIGPKTAVKLLNQYNS 205 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~~gs 205 (284)
-.+||||||||--+|.-.|-
T Consensus 120 ~~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 120 LNIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp TTSTTCCHHHHHHHHHHTTC
T ss_pred HcCCCcCHHHHHHHHHHhCC
Confidence 46899999999988864343
No 71
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}
Probab=44.87 E-value=18 Score=29.80 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 103 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~-~Gy~v~vv~ 145 (198)
T 3mcw_A 103 GLEALLRANGWLELVVAGVSTSNSVEATVRMAGN-LGFAVCLAE 145 (198)
T ss_dssp SHHHHHHHHTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred hHHHHHHcCCCCeEEEEEcCcChHHHHHHHHHHH-CCCEEEEeC
Confidence 3566778889999999999999999999998887 899999875
No 72
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=44.84 E-value=19 Score=29.83 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 113 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~-~Gy~V~vv~ 155 (197)
T 4h17_A 113 KLHETLQELGHLDLIVCGFMSHSSVSTTVRRAKD-YGYRCTLVE 155 (197)
T ss_dssp CHHHHHHHHTCSEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred hHHHHHHhcCCCEEEEEeeCcCHHHHHHHHHHHH-CCCEEEEeC
Confidence 4567778889999999999999999999998888 899999875
No 73
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A*
Probab=44.77 E-value=19 Score=30.47 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+.... .|++|+|++
T Consensus 128 ~L~~~L~~~gi~~lii~G~~t~~CV~~Ta~da~~-~Gy~v~vv~ 170 (223)
T 3tg2_A 128 PLLDWLRETGRDQLIITGVYAHIGILSTALDAFM-FDIQPFVIG 170 (223)
T ss_dssp SHHHHHHHHTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred cHHHHHHhcCcCceEEeecccChHHHHHHHHHHH-CCCEEEEeC
Confidence 3567788899999999999999999999988887 899999987
No 74
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=44.71 E-value=23 Score=28.91 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+.+-|+...+ .|++++|++
T Consensus 115 ~L~~~L~~~gi~~lvv~G~~t~~CV~~Ta~da~~-~G~~v~v~~ 157 (186)
T 3gbc_A 115 PLLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVR-NGLATRVLV 157 (186)
T ss_dssp BHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred cHHHHHHhcCCCEEEEEEecccHHHHHHHHHHHH-CCCeEEEEh
Confidence 4667888899999999999999999999998887 899988875
No 75
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=44.57 E-value=5.4 Score=27.95 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=18.2
Q ss_pred CCCCCCCCCccChhhHHHHHHhc
Q psy14489 181 MSDNLPGVKKIGPKTAVKLLNQY 203 (284)
Q Consensus 181 ~sDni~Gv~giG~ktA~~LL~~~ 203 (284)
+.+.+..|||||+++|..++..+
T Consensus 54 ~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 54 SVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp CHHHHTTSSSTTSHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHH
Confidence 34556789999999999987754
No 76
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=43.98 E-value=20 Score=30.85 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=35.9
Q ss_pred CCCEEEEEEeCCCCcc-ccccCchhhhCCCCCChhHHHHHHHHHHHHHhcCCcEEee----------CCchHHHHHHHHH
Q psy14489 50 RATYIACIFDAKGKNF-RNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILII----------KGVEADDVIGTLA 118 (284)
Q Consensus 50 ~~~~~i~~fD~~~~~~-R~~l~~~YKa~R~~~p~~l~~q~~~i~~~l~~~gi~~~~~----------~g~EADD~ia~la 118 (284)
-|.|++|..|| ...| |+.-.|...++|... +.+ ..+.+.+..+||+++.. |..|=+.++.-+.
T Consensus 6 ~P~HVAiIMDG-NrRwAk~rgl~r~~GH~~G~-~~~----~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~ 79 (225)
T 3ugs_B 6 ELKHLAVVMDG-NRRWARAKGFLAKLGYSQGV-KTM----QKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLD 79 (225)
T ss_dssp CCCEEEEEECC-CC--------------CHHH-HHH----HHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHH
T ss_pred CCCeEEEeccC-cHHHHHHCCCCHHHHHHHHH-HHH----HHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHH
Confidence 48999999997 4444 444456667777653 222 34555667799999773 5567777777665
Q ss_pred HHh
Q psy14489 119 KQA 121 (284)
Q Consensus 119 ~~~ 121 (284)
...
T Consensus 80 ~~l 82 (225)
T 3ugs_B 80 RCL 82 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 77
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=43.73 E-value=20 Score=26.90 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHhhHhCCCeEEEEcCC-CccccccCC
Q psy14489 109 EADDVIGTLAKQAVTKHNLKVIISTND-KDMAQLVSN 144 (284)
Q Consensus 109 EADD~ia~la~~~~~~~~~~v~I~S~D-kDl~ql~~~ 144 (284)
-+|-+|+..|.. .|. .++|.| +|+..+.+-
T Consensus 97 ~~D~lIaA~A~~----~~~--~lvT~d~~df~~~~gl 127 (134)
T 3zvk_A 97 NNDLLIASHAIA----ENA--TLVTNNIKEFKRIPNL 127 (134)
T ss_dssp HHHHHHHHHHHH----HTC--EEEESSTTTSCSCTTC
T ss_pred ccHHHHHHHHHH----CCC--EEEECCHHHhcCCCCC
Confidence 579999988875 233 689999 999987553
No 78
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans}
Probab=43.27 E-value=22 Score=29.86 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 99 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~-~Gy~V~vv~ 141 (211)
T 3oqp_A 99 DLAGWLAARQIDTLTVTGYMTHNCDASTINHAVH-SGLAVEFLH 141 (211)
T ss_dssp SHHHHHHTTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEeeccCHHHHHHHHHHHH-CCCeEEEec
Confidence 3567888899999999999999999999998888 899999986
No 79
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis}
Probab=42.91 E-value=18 Score=28.94 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++++|++
T Consensus 91 ~L~~~L~~~gi~~lvv~G~~T~~CV~~Ta~da~~-~Gy~v~v~~ 133 (167)
T 2a67_A 91 NLNDLLTEQAVQTLEIAGVQTEFCVDTTIRMAHG-LGYTCLMTP 133 (167)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-HTCEEEECT
T ss_pred cHHHHHHHCCCCEEEEEecccChHHHHHHHHHHH-CCCEEEEec
Confidence 3567778899999999999999999999988877 899988875
No 80
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=42.89 E-value=23 Score=29.73 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|--+.+-|+.... .|++|+|++
T Consensus 133 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~-~Gy~v~vv~ 175 (211)
T 3o94_A 133 DLDIRLRERRVSTVILTGVLTDISVLHTAIDAYN-LGYDIEIVK 175 (211)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred hHHHHHHhCCCCeEEEEeeccChHHHHHHHHHHH-CCCEEEEec
Confidence 3667888899999999999999999999998887 899988875
No 81
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=42.72 E-value=18 Score=28.93 Aligned_cols=35 Identities=9% Similarity=0.294 Sum_probs=23.8
Q ss_pred HhHHHHHhCCChhHHHhhhhhcCCC-CCCCCCCCccChhh
Q psy14489 157 RTTIISRFGVSPEKIVDYFSLIGDM-SDNLPGVKKIGPKT 195 (284)
Q Consensus 157 ~~~~~~~~G~~p~q~~~~~~L~GD~-sDni~Gv~giG~kt 195 (284)
...+.+++|+.|++ ++++||+ ..++.+....|.++
T Consensus 103 ~~~~~~~~~~~~~~----~l~VGD~~~~Di~~A~~aG~~~ 138 (189)
T 3ib6_A 103 FDFTLNALQIDKTE----AVMVGNTFESDIIGANRAGIHA 138 (189)
T ss_dssp HHHHHHHHTCCGGG----EEEEESBTTTTHHHHHHTTCEE
T ss_pred HHHHHHHcCCCccc----EEEECCCcHHHHHHHHHCCCeE
Confidence 34567789998854 6899998 67776555455443
No 82
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, PROT structure initiative, midwest center for structural genomic; 1.75A {Oleispira antarctica} SCOP: c.33.1.0
Probab=42.25 E-value=20 Score=29.24 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 103 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~-~Gy~v~vv~ 145 (190)
T 3lqy_A 103 DLKKVLDDAGIKKLVIVGAMTHMAIDAVTRAAED-LGYECAVAH 145 (190)
T ss_dssp SHHHHHHHC-CCEEEEEEECTTTHHHHHHHHHHH-HTCEEEEEE
T ss_pred hHHHHHHhCCCCEEEEEecCcChHHHHHHHHHHH-CCCEEEEec
Confidence 4667888899999999999999999999988877 899998875
No 83
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=41.37 E-value=9.7 Score=32.30 Aligned_cols=18 Identities=33% Similarity=0.325 Sum_probs=14.8
Q ss_pred CCCCCccChhhHHHHHHh
Q psy14489 185 LPGVKKIGPKTAVKLLNQ 202 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~~ 202 (284)
+-.+||||+|||--++.-
T Consensus 123 L~~lpGIG~kTA~~il~~ 140 (218)
T 1pu6_A 123 LLDQKGIGKESADAILCY 140 (218)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HHcCCCcCHHHHHHHHHH
Confidence 456899999999888774
No 84
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A*
Probab=41.33 E-value=27 Score=29.65 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=36.9
Q ss_pred HHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 91 IHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 91 i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
+.++|+..|+..+..-|.++|=-+.+-|+...+ .|++|+|++
T Consensus 158 L~~~L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~-~Gy~V~Vv~ 199 (235)
T 2wt9_A 158 LTGYLKERGIDTVYVVGIATDFCVAWTALDAVK-QGFKTLVIE 199 (235)
T ss_dssp HHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred HHHHHHHCCCCEEEEEEeCccHHHHHHHHHHHh-CCCEEEEec
Confidence 556778899999999999999999999998888 899998875
No 85
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0
Probab=40.24 E-value=23 Score=29.87 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 141 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~-~Gy~v~vv~ 183 (226)
T 3kl2_A 141 NLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYE-RGFRVITLT 183 (226)
T ss_dssp SHHHHHHHHTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred hHHHHHhCCCCCcEEEeccCcchHHHHHHHHHHH-CCCEEEEec
Confidence 4778888899999999999999999999988887 899998885
No 86
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum}
Probab=38.80 E-value=30 Score=29.40 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+.+-|+...+ .|++|+|++
T Consensus 147 ~L~~~L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~-~Gy~V~Vv~ 189 (227)
T 3r2j_A 147 GLAGLLHSIGARRVFVCGVAYDFCVFFTAMDARK-NGFSVVLLE 189 (227)
T ss_dssp SHHHHHHHHTCCEEEEEESCTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred cHHHHHHHcCCCEEEEEEeccchHHHHHHHHHHH-CCCEEEEEh
Confidence 3567778889999999999999999999998888 899998875
No 87
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A
Probab=38.72 E-value=26 Score=30.00 Aligned_cols=43 Identities=9% Similarity=0.281 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 149 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~-~Gy~V~vv~ 191 (236)
T 3ot4_A 149 MLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMS-AGFRPLVLS 191 (236)
T ss_dssp SHHHHHHHTTCCEEEEEESCTTTHHHHHHHHHHH-HTCEEEEEE
T ss_pred hHHHHHHHCCCCEEEEeCccCcHHHHHHHHHHHH-CCCEEEEec
Confidence 4667888899999999999999999888888777 899998885
No 88
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3
Probab=38.36 E-value=26 Score=30.48 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+.... .|++|+|++
T Consensus 154 ~L~~~Lr~~gi~~lvI~Gv~T~~CV~~Ta~dA~~-~Gy~V~Vv~ 196 (264)
T 1nba_A 154 NLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIA-KGFRPIIPR 196 (264)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-HTCEEEEEG
T ss_pred hHHHHHHhCCCCEEEEEecCcCCHHHHHHHHHHH-CCCEEEEec
Confidence 3567788899999999999999888888888777 899999886
No 89
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=38.15 E-value=31 Score=30.11 Aligned_cols=43 Identities=33% Similarity=0.315 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+.+-|+.... .|++|+|++
T Consensus 135 ~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~-~Gy~V~vv~ 177 (287)
T 2fq1_A 135 PLEQMLKESGRNQLIITGVYAHIGCMTTATDAFM-RDIKPFMVA 177 (287)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred cHHHHHHHCCCCEEEEEEeCcchHHHHHHHHHHH-CCCEEEEec
Confidence 3567888899999999999999888888888877 899998885
No 90
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=38.06 E-value=12 Score=31.78 Aligned_cols=17 Identities=12% Similarity=0.175 Sum_probs=13.9
Q ss_pred CCCCccChhhHHHHHHh
Q psy14489 186 PGVKKIGPKTAVKLLNQ 202 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~ 202 (284)
-.+||||++||.-++..
T Consensus 118 ~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 118 LDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp HTSTTCCHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 34899999999888764
No 91
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=37.93 E-value=12 Score=32.10 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=14.9
Q ss_pred CCCccChhhHHHHHHh-cCC
Q psy14489 187 GVKKIGPKTAVKLLNQ-YNS 205 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~-~gs 205 (284)
.+||||+|||--++.- +|-
T Consensus 142 ~lpGIG~kTA~~ill~alg~ 161 (233)
T 2h56_A 142 AIKGIGQWTAEMFMMFSLGR 161 (233)
T ss_dssp TSTTCCHHHHHHHHHHTTCC
T ss_pred hCCCcCHHHHHHHHHHhCCC
Confidence 6899999999887763 444
No 92
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Probab=37.16 E-value=20 Score=29.80 Aligned_cols=43 Identities=30% Similarity=0.329 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 95 ~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~-~Gy~V~vv~ 137 (208)
T 1yac_A 95 DFVKAVKATGKKQLIIAGVVTEVCVAFPALSAIE-EGFDVFVVT 137 (208)
T ss_dssp HHHHHHHHTTCSEEEEEEBSCCCCCHHHHHHHHH-TTCEEEEET
T ss_pred hHHHHHHhcCCCEEEEEEeccchhHHHHHHHHHH-CCCEEEEEC
Confidence 5667888899999999999999999988988887 899999986
No 93
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A
Probab=36.96 E-value=35 Score=28.58 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+.+-|+...+ .|++++|++
T Consensus 144 ~L~~~L~~~gi~~l~i~G~~t~~CV~~Ta~~a~~-~g~~v~v~~ 186 (216)
T 3v8e_A 144 DMNKYLEKHHTDEVYIVGVALEYXVKATAISAAE-LGYKTTVLL 186 (216)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred hHHHHHHhCCCCEEEEEEeccccHHHHHHHHHHH-CCCEEEEec
Confidence 3567788899999999999999999988888887 899988875
No 94
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=36.50 E-value=26 Score=26.17 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhhHhCCCeEEEEcCC-CccccccCCCe
Q psy14489 109 EADDVIGTLAKQAVTKHNLKVIISTND-KDMAQLVSNKI 146 (284)
Q Consensus 109 EADD~ia~la~~~~~~~~~~v~I~S~D-kDl~ql~~~~v 146 (284)
-+|-+|+..|.. .|. .++|.| +||..+.+-.+
T Consensus 96 ~~D~lIaA~A~~----~~~--~lvT~d~~dF~~~~gl~v 128 (132)
T 3tnd_A 96 PFDQMIAGHARS----RGL--IIVTNNTREFERVGGLRT 128 (132)
T ss_dssp HHHHHHHHHHHH----TTC--EEEESCCHHHHTSTTCCE
T ss_pred chHHHHHHHHHH----cCC--EEEECCHHHhCCCCCCee
Confidence 578888887764 343 689999 99988755443
No 95
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=36.44 E-value=13 Score=31.59 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.2
Q ss_pred CCCCccChhhHHHHHH
Q psy14489 186 PGVKKIGPKTAVKLLN 201 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~ 201 (284)
-.+||||++||.-++.
T Consensus 112 ~~lpGIG~~TA~~il~ 127 (225)
T 1kg2_A 112 AALPGVGRSTAGAILS 127 (225)
T ss_dssp HTSTTCCHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHH
Confidence 3489999999988776
No 96
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=36.42 E-value=24 Score=30.95 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=47.3
Q ss_pred CCCEEEEEEeCCCCcc-ccccCchhhhCCCCCChhHHHHHHHHHHHHHhcCCcEEee----------CCchHHHHHHHHH
Q psy14489 50 RATYIACIFDAKGKNF-RNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILII----------KGVEADDVIGTLA 118 (284)
Q Consensus 50 ~~~~~i~~fD~~~~~~-R~~l~~~YKa~R~~~p~~l~~q~~~i~~~l~~~gi~~~~~----------~g~EADD~ia~la 118 (284)
-|.|++|+.|| ...| |+.-.|...++|... +. +..+.+++..+||+++.. |..|-+.++.-+.
T Consensus 24 iP~HVAiIMDG-N~RwAk~rgl~r~~GH~~G~-~~----~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~ 97 (256)
T 4h8e_A 24 IPEHIAIIMDG-NGRWAKKRKMPRIKGHYEGM-QT----IKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPV 97 (256)
T ss_dssp CCSEEEEECCC-HHHHHHHTTCCHHHHHHHHH-HH----HHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCC-CHHHHHHCCCCHHHHHHHHH-HH----HHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHH
Confidence 38999999997 3344 333345555555432 12 234455666789999874 4558787777665
Q ss_pred HHhhH------hCCCeEEEEcCCCcc
Q psy14489 119 KQAVT------KHNLKVIISTNDKDM 138 (284)
Q Consensus 119 ~~~~~------~~~~~v~I~S~DkDl 138 (284)
....+ ..+.++-++ +|.+.
T Consensus 98 ~~l~~~~~~l~~~~vrvr~i-Gd~~~ 122 (256)
T 4h8e_A 98 NFLKTFLPELIEKNVKVETI-GFTDK 122 (256)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-SCGGG
T ss_pred HHHHHHHHHHHHcCeEEEEe-cCccc
Confidence 44322 034454444 45554
No 97
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=36.05 E-value=13 Score=31.14 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=13.2
Q ss_pred CCCccChhhHHHHHHh
Q psy14489 187 GVKKIGPKTAVKLLNQ 202 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~ 202 (284)
.+||||+|||--++.-
T Consensus 113 ~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 113 ALPGVGRKTANVVLNT 128 (211)
T ss_dssp HSTTCCHHHHHHHHHH
T ss_pred hCCCCChHHHHHHHHH
Confidence 3789999999887764
No 98
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=35.13 E-value=15 Score=29.84 Aligned_cols=23 Identities=9% Similarity=-0.164 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCccChhhHHHHHH
Q psy14489 179 GDMSDNLPGVKKIGPKTAVKLLN 201 (284)
Q Consensus 179 GD~sDni~Gv~giG~ktA~~LL~ 201 (284)
-++-+.+-.+||||++||-..+.
T Consensus 100 p~~~~~L~~LpGVG~yTAdav~~ 122 (161)
T 4e9f_A 100 TKQWKYPIELHGIGKYGNDSYRI 122 (161)
T ss_dssp HSCCSSGGGSTTCCHHHHHHHHH
T ss_pred CCChhhhhcCCCchHHHHHHHHH
Confidence 34556677899999999977544
No 99
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=34.78 E-value=19 Score=27.59 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhhHhCCCeEEEEcCC-CccccccCCCeEEEeCcEeeeHhHHHHHh
Q psy14489 109 EADDVIGTLAKQAVTKHNLKVIISTND-KDMAQLVSNKIALINNNKIHDRTTIISRF 164 (284)
Q Consensus 109 EADD~ia~la~~~~~~~~~~v~I~S~D-kDl~ql~~~~v~~~~~~~~~~~~~~~~~~ 164 (284)
-+|.+|+..|.. .|. .++|.| +|+..+.+-++ ..+++.+|.+.+
T Consensus 96 ~~D~lIaA~A~~----~~~--~lvT~D~kdf~~i~~~~i------~~i~~~efl~~~ 140 (149)
T 1v96_A 96 MEDIITATTAIY----TNS--LLVTDDPKRYEPIRRFGL------DTMPLDKFIKEV 140 (149)
T ss_dssp HHHHHHHHHHHH----HTC--EEEESCHHHHGGGGGGTC------CEEEHHHHHHHH
T ss_pred HhHHHHHHHHHH----cCC--EEEECCHHHHhhhhhCCe------eecCHHHHHHHH
Confidence 489999988875 233 588999 59988754333 345566665443
No 100
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=33.33 E-value=16 Score=31.18 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=13.9
Q ss_pred CCCCCccChhhHHHHHH
Q psy14489 185 LPGVKKIGPKTAVKLLN 201 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~ 201 (284)
+-.+||||++||.-++.
T Consensus 115 L~~lpGIG~~TA~~il~ 131 (226)
T 1orn_A 115 LMKLPGVGRKTANVVVS 131 (226)
T ss_dssp HTTSTTCCHHHHHHHHH
T ss_pred HHHCCCccHHHHHHHHH
Confidence 34589999999988776
No 101
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=32.92 E-value=16 Score=31.11 Aligned_cols=16 Identities=31% Similarity=0.171 Sum_probs=13.2
Q ss_pred CCCCccChhhHHHHHH
Q psy14489 186 PGVKKIGPKTAVKLLN 201 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~ 201 (284)
-.+||||+|||--++.
T Consensus 149 ~~l~GIG~~TA~~ill 164 (225)
T 2yg9_A 149 VQLPGIGRWTAEMFLL 164 (225)
T ss_dssp HTSTTCCHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHH
Confidence 3589999999987765
No 102
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=32.61 E-value=70 Score=25.59 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=25.5
Q ss_pred HhHHHHHhCCChhHHHhhhhhcCCCCC-CCCCCCccChhhH
Q psy14489 157 RTTIISRFGVSPEKIVDYFSLIGDMSD-NLPGVKKIGPKTA 196 (284)
Q Consensus 157 ~~~~~~~~G~~p~q~~~~~~L~GD~sD-ni~Gv~giG~ktA 196 (284)
...+.+++|+.| +.+||+.. ++.+....|.+++
T Consensus 156 ~~~~~~~~~~~~-------~~vgD~~~~Di~~a~~aG~~~i 189 (220)
T 2zg6_A 156 FGFALAKVGYPA-------VHVGDIYELDYIGAKRSYVDPI 189 (220)
T ss_dssp HHHHHHHHCSSE-------EEEESSCCCCCCCSSSCSEEEE
T ss_pred HHHHHHHcCCCe-------EEEcCCchHhHHHHHHCCCeEE
Confidence 445677899987 89999998 8988877776553
No 103
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=32.59 E-value=16 Score=31.15 Aligned_cols=22 Identities=36% Similarity=0.286 Sum_probs=16.4
Q ss_pred CCCCCccChhhHHHHHH-hcCCH
Q psy14489 185 LPGVKKIGPKTAVKLLN-QYNSL 206 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~-~~gsl 206 (284)
+-.+||||++||.-++. .+|-.
T Consensus 141 L~~l~GIG~~TA~~ill~~lg~p 163 (228)
T 3s6i_A 141 LTQIKGIGRWTVEMLLIFSLNRD 163 (228)
T ss_dssp HTTSTTCCHHHHHHHHHHTSCCS
T ss_pred HHhCCCcCHHHHHHHHHHhCCCC
Confidence 45789999999988765 45543
No 104
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=32.47 E-value=16 Score=31.27 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=15.5
Q ss_pred CCCCCccChhhHHHHHH-hcCC
Q psy14489 185 LPGVKKIGPKTAVKLLN-QYNS 205 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~-~~gs 205 (284)
+-.+||||++||--++- -+|-
T Consensus 152 L~~l~GIG~~TA~~ill~alg~ 173 (232)
T 4b21_A 152 LSKIKGVKRWTIEMYSIFTLGR 173 (232)
T ss_dssp HTTSTTCCHHHHHHHHHHTSCC
T ss_pred HHhCCCcCHHHHHHHHHHhCCC
Confidence 45689999999987665 3443
No 105
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=32.41 E-value=20 Score=26.32 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=16.5
Q ss_pred cCCCCCCCCCCCccChhhHHHHHHh
Q psy14489 178 IGDMSDNLPGVKKIGPKTAVKLLNQ 202 (284)
Q Consensus 178 ~GD~sDni~Gv~giG~ktA~~LL~~ 202 (284)
+||. .+.-||||||..+.+|-.+
T Consensus 15 mgeK--~V~evpGIG~~~~~~L~~~ 37 (89)
T 1ci4_A 15 MGEK--PVGSLAGIGEVLGKKLEER 37 (89)
T ss_dssp CTTC--CGGGSTTCCHHHHHHHHHT
T ss_pred CCCC--CcccCCCcCHHHHHHHHHc
Confidence 5543 3566899999988887763
No 106
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=30.98 E-value=18 Score=32.10 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=15.6
Q ss_pred CCCCCccChhhHHHHHHh-cCC
Q psy14489 185 LPGVKKIGPKTAVKLLNQ-YNS 205 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~~-~gs 205 (284)
+-.+||||||||.-.+-- +|-
T Consensus 213 L~~lpGIG~~TA~~ill~~lg~ 234 (290)
T 3i0w_A 213 LKKFMGVGPQVADCIMLFSMQK 234 (290)
T ss_dssp HTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHhCCCcCHHHHHHHHHHhCCC
Confidence 456899999999887653 444
No 107
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=30.68 E-value=15 Score=32.70 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=39.4
Q ss_pred CCCeEEEEcCC-CccccccCC-CeEEEe--CcEeeeHhHHHHH-----hCCChhHHHhhhhhcCCCC--------CCCCC
Q psy14489 125 HNLKVIISTND-KDMAQLVSN-KIALIN--NNKIHDRTTIISR-----FGVSPEKIVDYFSLIGDMS--------DNLPG 187 (284)
Q Consensus 125 ~~~~v~I~S~D-kDl~ql~~~-~v~~~~--~~~~~~~~~~~~~-----~G~~p~q~~~~~~L~GD~s--------Dni~G 187 (284)
.+..|.++.+. +|+...... .+-+-- ....++.+++++- .|+++ ..+- -|+||-. -.|..
T Consensus 182 ~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~lI~~~~vk~GavVIDVgi~r--~~~g-~l~GDVdf~~v~~~a~~iTP 258 (288)
T 1b0a_A 182 AGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINR--LENG-KVVGDVVFEDAAKRASYITP 258 (288)
T ss_dssp TTCEEEEECSSCSCHHHHHHHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEE--CTTS-CEECSBCHHHHHHHCSEECC
T ss_pred CCCeEEEEeCCchhHHHHhccCCEEEECCCCcCcCCHHHcCCCcEEEEccCCc--cCCC-CccCCcCHHHHhhhccEecC
Confidence 56778777543 344443322 232222 2334555555321 23321 0011 3677731 25778
Q ss_pred CC-ccChhhHHHHHHh
Q psy14489 188 VK-KIGPKTAVKLLNQ 202 (284)
Q Consensus 188 v~-giG~ktA~~LL~~ 202 (284)
|| |+||.|.+-|++.
T Consensus 259 VPGGVGpmT~a~Ll~N 274 (288)
T 1b0a_A 259 VPGGVGPMTVATLIEN 274 (288)
T ss_dssp SSSSSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHH
Confidence 88 6999999999873
No 108
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi}
Probab=30.54 E-value=22 Score=29.67 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+..|+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 100 ~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~-~Gy~V~vv~ 142 (204)
T 1yzv_A 100 QVMPLVDLPEVEQVVLWGFETHVCILQTAAALLD-MKKKVVIAV 142 (204)
T ss_dssp TTHHHHSSTTEEEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEEeccCHHHHHHHHHHHH-CCCEEEEEC
Confidence 4667788899999999999999999999998887 899988875
No 109
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=30.51 E-value=15 Score=29.51 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=25.2
Q ss_pred HhHHHHHhCCChhHHHhhhhhcCCCCCCCCCCCccChhhH
Q psy14489 157 RTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTA 196 (284)
Q Consensus 157 ~~~~~~~~G~~p~q~~~~~~L~GD~sDni~Gv~giG~ktA 196 (284)
.....+++|+.|++ ++++||+.-+|.+....|.++.
T Consensus 146 ~~~a~~~lg~~p~e----~l~VgDs~~Di~aA~~aG~~~i 181 (216)
T 3kbb_A 146 YLLVLERLNVVPEK----VVVFEDSKSGVEAAKSAGIERI 181 (216)
T ss_dssp HHHHHHHHTCCGGG----EEEEECSHHHHHHHHHTTCCCE
T ss_pred HHHHHHhhCCCccc----eEEEecCHHHHHHHHHcCCcEE
Confidence 34567889999965 5789998877765555555553
No 110
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=29.59 E-value=16 Score=32.84 Aligned_cols=107 Identities=19% Similarity=0.341 Sum_probs=54.5
Q ss_pred HHHHHHhcCCcE----EeeCCchHHHHHH-HHHHHhhHhCCCeEEEE-cCCCccccccCC-CeEEEe--CcEeeeHhHHH
Q psy14489 91 IHQMVKAIGWPI----LIIKGVEADDVIG-TLAKQAVTKHNLKVIIS-TNDKDMAQLVSN-KIALIN--NNKIHDRTTII 161 (284)
Q Consensus 91 i~~~l~~~gi~~----~~~~g~EADD~ia-~la~~~~~~~~~~v~I~-S~DkDl~ql~~~-~v~~~~--~~~~~~~~~~~ 161 (284)
+.++|+..|++. +.+-|. -.++| -+|+.... .+..|.|+ |.-+|+...+.. .+-+-- ....++.++++
T Consensus 152 i~~ll~~~~i~l~gk~vvVIG~--s~iVG~p~A~lL~~-~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk 228 (301)
T 1a4i_A 152 CLELIKETGVPIAGRHAVVVGR--SKIVGAPMHDLLLW-NNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIK 228 (301)
T ss_dssp HHHHHHTTTCCCTTCEEEEECC--CTTTHHHHHHHHHH-TTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGGSC
T ss_pred HHHHHHHcCCCCCCCEEEEECC--CchHHHHHHHHHHh-CCCeEEEEECCcccHHHHhccCCEEEECCCCcccCCHHHcC
Confidence 677888776531 112221 11112 22233333 67788888 444566555443 332222 33356666654
Q ss_pred HH-----hCCChhHHHh-----hhhhcCCC--------CCCCCCCC-ccChhhHHHHHHh
Q psy14489 162 SR-----FGVSPEKIVD-----YFSLIGDM--------SDNLPGVK-KIGPKTAVKLLNQ 202 (284)
Q Consensus 162 ~~-----~G~~p~q~~~-----~~~L~GD~--------sDni~Gv~-giG~ktA~~LL~~ 202 (284)
+- .|+++. .+ -.-|+||- +-.|..|| |+||-|.+-||+.
T Consensus 229 ~GavVIDVgi~~~--~d~~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGpmTiamLl~N 286 (301)
T 1a4i_A 229 PGAIVIDCGINYV--PDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQS 286 (301)
T ss_dssp TTCEEEECCCBC------------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEccCCCc--ccccccCCCeeeccccHHHhhhhceEeCCCCCCccHHHHHHHHHH
Confidence 31 233321 11 11377873 22567777 7999999999873
No 111
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii}
Probab=29.15 E-value=28 Score=29.20 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.2
Q ss_pred hhHHHHHHhcCCHHHHHHhhhh
Q psy14489 194 KTAVKLLNQYNSLENIINNANN 215 (284)
Q Consensus 194 ktA~~LL~~~gsle~i~~~~~~ 215 (284)
+.|.+||++|||+.+.++.+..
T Consensus 10 ~~Ak~LlkeFG~in~fLe~IP~ 31 (222)
T 2dla_A 10 EKAKELLKGFGSINDFMDAIPK 31 (222)
T ss_dssp HHHHHHTTTTSSHHHHHHHGGG
T ss_pred HHHHHHHHHhccHHHHHHHccc
Confidence 5799999999999999987753
No 112
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=29.05 E-value=16 Score=32.46 Aligned_cols=74 Identities=23% Similarity=0.461 Sum_probs=40.5
Q ss_pred CCCeEEEEcCC-CccccccCC-CeEEEe--CcEeeeHhHHHHH-----hCCChhHHHhhhhhcCCC--------CCCCCC
Q psy14489 125 HNLKVIISTND-KDMAQLVSN-KIALIN--NNKIHDRTTIISR-----FGVSPEKIVDYFSLIGDM--------SDNLPG 187 (284)
Q Consensus 125 ~~~~v~I~S~D-kDl~ql~~~-~v~~~~--~~~~~~~~~~~~~-----~G~~p~q~~~~~~L~GD~--------sDni~G 187 (284)
.|..|.|+.+. +|+-..... .+-+-- ....++.+++++- .|.++ .+- -|+||- +-.|..
T Consensus 173 ~gAtVtv~~~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~---~~g-kl~GDVdf~~v~~~a~~iTP 248 (276)
T 3ngx_A 173 RNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINY---VND-KVVGDANFEDLSEYVEAITP 248 (276)
T ss_dssp TTCEEEEECTTCSCHHHHHHHSSEEEECSSCTTCBCGGGCCTTCEEEECCCEE---ETT-EEECSBCHHHHHTTSSEECC
T ss_pred CCCeEEEEeCCcccHHHhhccCCEEEECCCCCccccHhhccCCcEEEEeccCc---cCC-ceeccccHHHHhhhceEeCC
Confidence 57788888553 344333322 232222 2335666665331 24443 222 367773 124666
Q ss_pred CC-ccChhhHHHHHHh
Q psy14489 188 VK-KIGPKTAVKLLNQ 202 (284)
Q Consensus 188 v~-giG~ktA~~LL~~ 202 (284)
|| |+||.|.+-|++.
T Consensus 249 VPGGVGpmT~a~Ll~n 264 (276)
T 3ngx_A 249 VPGGVGPITATNILEN 264 (276)
T ss_dssp TTTSSHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHH
Confidence 77 6999999999884
No 113
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=28.95 E-value=20 Score=31.45 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=15.6
Q ss_pred CCCCCccChhhHHHHHH-hcCC
Q psy14489 185 LPGVKKIGPKTAVKLLN-QYNS 205 (284)
Q Consensus 185 i~Gv~giG~ktA~~LL~-~~gs 205 (284)
+-.+||||+|||.-.+. -+|-
T Consensus 209 L~~lpGIG~~TA~~ill~~lg~ 230 (282)
T 1mpg_A 209 LQTFPGIGRWTANYFALRGWQA 230 (282)
T ss_dssp HTTSTTCCHHHHHHHHHHHSCC
T ss_pred HhcCCCcCHHHHHHHHHHhCCC
Confidence 34789999999987665 3444
No 114
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=28.72 E-value=20 Score=31.69 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=14.6
Q ss_pred CCCCccChhhHHHHHHh-cC
Q psy14489 186 PGVKKIGPKTAVKLLNQ-YN 204 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~-~g 204 (284)
-.+||||||||.-.+.- +|
T Consensus 213 ~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 213 TSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HTSTTCCHHHHHHHHHHTTC
T ss_pred hcCCCcCHHHHHHHHHHccC
Confidence 35799999999887663 44
No 115
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=28.17 E-value=18 Score=32.40 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=40.0
Q ss_pred CCCeEEEEcC-CCccc--cccCC-CeEEEe--CcEeeeHhHHHHH-----hCCChhHHHh-----hhhhcCCC-------
Q psy14489 125 HNLKVIISTN-DKDMA--QLVSN-KIALIN--NNKIHDRTTIISR-----FGVSPEKIVD-----YFSLIGDM------- 181 (284)
Q Consensus 125 ~~~~v~I~S~-DkDl~--ql~~~-~v~~~~--~~~~~~~~~~~~~-----~G~~p~q~~~-----~~~L~GD~------- 181 (284)
.|..|.|+.. -+|+- ..... .+-+-- ....++.+++++. .|.++. .+ -.-|+||-
T Consensus 188 ~gAtVtv~~~~T~~l~l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~--~~~~~~~g~kl~GDVdf~~v~~ 265 (300)
T 4a26_A 188 ENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPV--PDPSRKDGYRLVGDVCFEEAAA 265 (300)
T ss_dssp TTCEEEEECTTSCHHHHHHHHHTCSEEEECSCCTTCBCGGGSCTTCEEEECCCEEE--SCSCSTTSCEEECSBCHHHHTT
T ss_pred CCCeEEEEeCCCCCchhhhhhccCCEEEECCCCCCCCcHHhcCCCcEEEEEeccCC--cCCcccCCceeecCccHHHHHh
Confidence 5778888865 45554 43332 332222 2334555555321 232220 01 01367772
Q ss_pred -CCCCCCCC-ccChhhHHHHHHh
Q psy14489 182 -SDNLPGVK-KIGPKTAVKLLNQ 202 (284)
Q Consensus 182 -sDni~Gv~-giG~ktA~~LL~~ 202 (284)
+-.|..|| |+||.|.+-||+.
T Consensus 266 ~a~~iTPVPGGVGpmT~a~Ll~N 288 (300)
T 4a26_A 266 RAAWISPVPGGVGPMTIAMLLEN 288 (300)
T ss_dssp TCSEEECTTTSSSHHHHHHHHHH
T ss_pred hceEeCCCCCcChHHHHHHHHHH
Confidence 12355677 6999999999884
No 116
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=27.88 E-value=36 Score=27.69 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=22.4
Q ss_pred eHhHHHHHhCCChhHHHhhhhhcCCCCCCCCCCCccCh
Q psy14489 156 DRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGP 193 (284)
Q Consensus 156 ~~~~~~~~~G~~p~q~~~~~~L~GD~sDni~Gv~giG~ 193 (284)
-...+.+++|+.|++ ++++||+.-++.+....|.
T Consensus 136 ~~~~~~~~lgi~~~~----~~~VGD~~~Di~~a~~aG~ 169 (211)
T 2gmw_A 136 MLLSARDYLHIDMAA----SYMVGDKLEDMQAAVAANV 169 (211)
T ss_dssp HHHHHHHHHTBCGGG----CEEEESSHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHH----EEEEcCCHHHHHHHHHCCC
Confidence 344567889998865 5789988766644443443
No 117
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=27.70 E-value=13 Score=32.31 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCCCCCCCccChhhHHHHHHhcCCH
Q psy14489 173 DYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSL 206 (284)
Q Consensus 173 ~~~~L~GD~sDni~Gv~giG~ktA~~LL~~~gsl 206 (284)
.+..|..-+.+-+..|||||+|+|.+++......
T Consensus 38 sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~~ 71 (241)
T 1vq8_Y 38 SVEDVRGADQSALADVSGIGNALAARIKADVGGL 71 (241)
T ss_dssp ----------------------------------
T ss_pred CHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3444555556778899999999999998766543
No 118
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=27.63 E-value=21 Score=33.02 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=29.4
Q ss_pred eHhHHHHHhCCChhHHHhhhhhcCCCCCCCCCCCccChhhHHHHH
Q psy14489 156 DRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLL 200 (284)
Q Consensus 156 ~~~~~~~~~G~~p~q~~~~~~L~GD~sDni~Gv~giG~ktA~~LL 200 (284)
..+++.++|| .++.++--+.+.+.-|.|||+++|.++=
T Consensus 327 iae~Lv~~FG-------sLq~Il~AS~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 327 IGYNVVRMFK-------TLDQISKASVEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHHHHHHHHC-------SHHHHTTCCHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHhC-------CHHHHHhCCHHHHHhccCccHHHHHHHH
Confidence 3444555555 6788888888999999999999998653
No 119
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=27.30 E-value=19 Score=32.02 Aligned_cols=102 Identities=18% Similarity=0.342 Sum_probs=54.4
Q ss_pred HHHHHHhcCCc-----EEeeCCc-h-HHHHHHHHHHHhhHhCCCeEEEEcC-CCccccccCC-CeEEEe--CcEeeeHhH
Q psy14489 91 IHQMVKAIGWP-----ILIIKGV-E-ADDVIGTLAKQAVTKHNLKVIISTN-DKDMAQLVSN-KIALIN--NNKIHDRTT 159 (284)
Q Consensus 91 i~~~l~~~gi~-----~~~~~g~-E-ADD~ia~la~~~~~~~~~~v~I~S~-DkDl~ql~~~-~v~~~~--~~~~~~~~~ 159 (284)
+.++|+..|++ ++. -|. + .=-.+|.+. .. .|..|.|+.+ -+|+-..... .+-+-- ....++.++
T Consensus 148 v~~lL~~~~i~l~Gk~vvV-IG~s~iVG~p~A~lL---~~-~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~ 222 (285)
T 3l07_A 148 IMTMLREYGIKTEGAYAVV-VGASNVVGKPVSQLL---LN-AKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADM 222 (285)
T ss_dssp HHHHHHHTTCCCTTCEEEE-ECCCTTTHHHHHHHH---HH-TTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGG
T ss_pred HHHHHHHhCCCCCCCEEEE-ECCCchhHHHHHHHH---HH-CCCeEEEEeCCchhHHHhcccCCEEEECCCCCCCCCHHH
Confidence 56777777653 222 231 1 222333322 22 5677888854 3455444433 232222 334567666
Q ss_pred HHHH-----hCCChhHHHhhhhhcCCCCC---------CCCCCC-ccChhhHHHHHHh
Q psy14489 160 IISR-----FGVSPEKIVDYFSLIGDMSD---------NLPGVK-KIGPKTAVKLLNQ 202 (284)
Q Consensus 160 ~~~~-----~G~~p~q~~~~~~L~GD~sD---------ni~Gv~-giG~ktA~~LL~~ 202 (284)
+++- .|+++.. --|+||- | .|..|| |+||.|.+-||+.
T Consensus 223 vk~GavVIDvgi~~~~----g~l~GDV-df~~v~~~a~~iTPVPGGVGpmT~a~Ll~n 275 (285)
T 3l07_A 223 VKEGAVVIDVGINHVD----GKIVGDV-DFAAVKDKVAAITPVPGGVGPMTITELLYN 275 (285)
T ss_dssp SCTTCEEEECCCEEET----TEEECSB-CHHHHTTTCSEECCSSSSSHHHHHHHHHHH
T ss_pred cCCCcEEEEecccCcC----CceecCc-cHHHHHhhheEeCCCCCcChHHHHHHHHHH
Confidence 6432 3444422 1377873 3 466677 5999999999874
No 120
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=25.84 E-value=25 Score=31.27 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=12.3
Q ss_pred CCccChhhHHHHHH
Q psy14489 188 VKKIGPKTAVKLLN 201 (284)
Q Consensus 188 v~giG~ktA~~LL~ 201 (284)
+||||+|||--++.
T Consensus 134 LpGIG~kTA~~iL~ 147 (287)
T 3n5n_X 134 LPGVGRYTAGAIAS 147 (287)
T ss_dssp STTCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 79999999988776
No 121
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=25.78 E-value=28 Score=25.93 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhhHhCCCeEEEEcCC-Cccccc
Q psy14489 109 EADDVIGTLAKQAVTKHNLKVIISTND-KDMAQL 141 (284)
Q Consensus 109 EADD~ia~la~~~~~~~~~~v~I~S~D-kDl~ql 141 (284)
-+|-+|+..|.. .| ..++|.| +|+..+
T Consensus 102 ~~D~liaA~A~~----~~--~~lvT~d~~df~~~ 129 (139)
T 2h1c_A 102 AADGYIAATAKQ----HS--LTVATRDTGSFFAA 129 (139)
T ss_dssp HHHHHHHHHHHH----HT--CEEECSCCHHHHHT
T ss_pred ccHHHHHHHHHH----cC--CeEEECCHHHHhhC
Confidence 578888888764 23 3689999 898876
No 122
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=25.69 E-value=25 Score=25.41 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=10.8
Q ss_pred CCCCccChhhHHHH
Q psy14489 186 PGVKKIGPKTAVKL 199 (284)
Q Consensus 186 ~Gv~giG~ktA~~L 199 (284)
.-++|||+|+|.+|
T Consensus 61 ~~L~giG~ki~~~L 74 (87)
T 2kp7_A 61 KILQHFGDRLCRML 74 (87)
T ss_dssp HTCTTTCHHHHHHH
T ss_pred HHhhcccHHHHHHH
Confidence 34789999998765
No 123
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=25.45 E-value=32 Score=26.28 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=16.0
Q ss_pred CCCccChhhHHHHHHhcC
Q psy14489 187 GVKKIGPKTAVKLLNQYN 204 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~g 204 (284)
.|.|||+.+|..++++.|
T Consensus 20 ~I~GIG~~~A~~I~~~~g 37 (114)
T 3r8n_M 20 SIYGVGKTRSKAILAAAG 37 (114)
T ss_dssp GSTTCCHHHHHHHHHHTT
T ss_pred hhcCcCHHHHHHHHHHcC
Confidence 378999999999999876
No 124
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A
Probab=24.54 E-value=45 Score=27.57 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEc
Q psy14489 90 LIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 133 (284)
Q Consensus 90 ~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S 133 (284)
.+.++|+ |+..+..-|.++|=-+-+-|+...+ .|++|+|++
T Consensus 99 ~L~~~L~--gi~~lvi~Gv~T~~CV~~Ta~dA~~-~Gy~V~Vv~ 139 (200)
T 1x9g_A 99 QVEELLE--DVDNAVVFGIEGHACILQTVADLLD-MNKRVFLPK 139 (200)
T ss_dssp HHHHTTT--TCCEEEEEEECTTTHHHHHHHHHHH-TTCEEEEEG
T ss_pred hHHHHhC--CCCEEEEEEEecCcHHHHHHHHHHh-CCCEEEEeC
Confidence 4566677 9999999999999999999998888 899999885
No 125
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=24.09 E-value=50 Score=28.72 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=29.7
Q ss_pred CEEEEEEeCCCCccc-cccCchhhhCCCCCChhHHHHHHHHHHHHHhcCCcEEeeCC
Q psy14489 52 TYIACIFDAKGKNFR-NILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKG 107 (284)
Q Consensus 52 ~~~i~~fD~~~~~~R-~~l~~~YKa~R~~~p~~l~~q~~~i~~~l~~~gi~~~~~~g 107 (284)
.|++|+.|| ...|- +.-.|...++|... ..+..+.+++..+||+++..-.
T Consensus 19 ~HVAiImDG-N~RwAk~~gl~r~~GH~~G~-----~~l~~iv~~c~~~GI~~lTlYa 69 (253)
T 3qas_B 19 RHVAIIMDG-NGRWAKKQGKIRAFGHKAGA-----KSVRRAVSFAANNGIEALTLYA 69 (253)
T ss_dssp SEEEEECCC-HHHHHHHTTCCHHHHHHHHH-----HHHHHHHHHHHHTTCSEEEEEC
T ss_pred CEEEEEecC-CHHHHHHcCCChhhhHHHHH-----HHHHHHHHHHHHCCCCEEEEEE
Confidence 899999997 33442 22234444444331 2233455677779999988644
No 126
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=23.81 E-value=28 Score=31.87 Aligned_cols=20 Identities=15% Similarity=0.032 Sum_probs=15.4
Q ss_pred CCCCccChhhHHHHHHh-cCC
Q psy14489 186 PGVKKIGPKTAVKLLNQ-YNS 205 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~-~gs 205 (284)
-.+||||||||--.+.- +|-
T Consensus 256 ~~LpGIGp~TA~~ill~alg~ 276 (360)
T 2xhi_A 256 CILPGVGTCVADKICLMALDK 276 (360)
T ss_dssp TTSTTCCHHHHHHHHHHHSCC
T ss_pred HhCCCCCHHHHHHHHHHhCCC
Confidence 47899999999887753 454
No 127
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=23.29 E-value=54 Score=25.35 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHhhHhCCCeEEEEcCCCcccc
Q psy14489 109 EADDVIGTLAKQAVTKHNLKVIISTNDKDMAQ 140 (284)
Q Consensus 109 EADD~ia~la~~~~~~~~~~v~I~S~DkDl~q 140 (284)
=+|-+|+..|.. .|. .++|.|+|+.+
T Consensus 101 ~~Dali~A~A~~----~g~--~l~T~D~dF~~ 126 (156)
T 1w8i_A 101 YTDAISEVVAEE----LKL--KLISYDSRFSL 126 (156)
T ss_dssp HHHHHHHHHHHH----HTC--EEECSCTTCSS
T ss_pred HhHHHHHHHHHH----cCC--EEEEeCcccCc
Confidence 478888888875 233 89999999998
No 128
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=23.05 E-value=23 Score=31.46 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=41.2
Q ss_pred CCCeEEEEcCC-CccccccCC-CeEEEe--CcEeeeHhHHHHH-----hCCChhHHHhhhhhcCCCCC---------CCC
Q psy14489 125 HNLKVIISTND-KDMAQLVSN-KIALIN--NNKIHDRTTIISR-----FGVSPEKIVDYFSLIGDMSD---------NLP 186 (284)
Q Consensus 125 ~~~~v~I~S~D-kDl~ql~~~-~v~~~~--~~~~~~~~~~~~~-----~G~~p~q~~~~~~L~GD~sD---------ni~ 186 (284)
.|..|.|+.+- +|+-..... .+-+-- ....++.+++++- .|+++. .+- -|+|| .| .|.
T Consensus 183 ~gAtVtv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~~--~~g-kl~GD-Vdf~~v~~~a~~iT 258 (285)
T 3p2o_A 183 AGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRL--ESG-KIVGD-VDFEEVSKKSSYIT 258 (285)
T ss_dssp TTCEEEEECTTCSCHHHHHTTCSEEEECSSCTTCBCGGGSCTTEEEEECCCEEC--TTS-CEECS-BCHHHHTTTEEEEC
T ss_pred CCCeEEEEeCCchhHHHHhhcCCEEEECCCCCCcCCHHHcCCCeEEEEeccCcc--cCC-CEecc-ccHHHHHhhheEeC
Confidence 56778887543 344444333 232222 3345666666432 344331 122 37787 34 356
Q ss_pred CCC-ccChhhHHHHHHh
Q psy14489 187 GVK-KIGPKTAVKLLNQ 202 (284)
Q Consensus 187 Gv~-giG~ktA~~LL~~ 202 (284)
.|| |+||.|.+-|++.
T Consensus 259 PVPGGVGpmT~a~Ll~n 275 (285)
T 3p2o_A 259 PVPGGVGPMTIAMLLEN 275 (285)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHH
Confidence 677 5999999999874
No 129
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=22.70 E-value=22 Score=31.06 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=37.4
Q ss_pred CCCEEEEEEeCCCCcc-ccccCchhhhCCCCCChhHHHHHHHHHHHHHhcCCcEEee----------CCchHHHHHHHHH
Q psy14489 50 RATYIACIFDAKGKNF-RNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILII----------KGVEADDVIGTLA 118 (284)
Q Consensus 50 ~~~~~i~~fD~~~~~~-R~~l~~~YKa~R~~~p~~l~~q~~~i~~~l~~~gi~~~~~----------~g~EADD~ia~la 118 (284)
-|.|++|+.|| +..| |+.-.|...++|... +. +..+.+++..+||+++.. |..|=+.++.-+.
T Consensus 17 iP~HVAiIMDG-NrRwAk~rgl~r~~GH~~G~-~~----l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~ 90 (253)
T 3sgv_B 17 GCRHVAIIMDG-NGRWAKKQGKIRAFGHKAGA-KS----VRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFV 90 (253)
T ss_dssp CCSEEEEEECC-HHHHHHHTTCCHHHHHHHHH-HH----HHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHH
T ss_pred CCCEEEEEecC-cHHHHHHCCCCHHHHHHHHH-HH----HHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHH
Confidence 37999999997 3444 333345555665542 12 234555667799999874 3456777666554
Q ss_pred H
Q psy14489 119 K 119 (284)
Q Consensus 119 ~ 119 (284)
.
T Consensus 91 ~ 91 (253)
T 3sgv_B 91 W 91 (253)
T ss_dssp T
T ss_pred H
Confidence 3
No 130
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=22.45 E-value=72 Score=24.93 Aligned_cols=44 Identities=23% Similarity=0.186 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCcEEeeCCchHHHHHHHHHHHhhHhCCCeEEEEcCCCccccccC
Q psy14489 89 NLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVS 143 (284)
Q Consensus 89 ~~i~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~~v~I~S~DkDl~ql~~ 143 (284)
..++..++..|.+ .+ -+|-+||..|.. .|. .++|.|+||..+.+
T Consensus 98 ~~l~~~l~~~G~~----~~-~~D~lIaA~A~~----~~~--~LvT~d~dF~~i~~ 141 (150)
T 3dbo_B 98 ARLRIHLAESGRR----VR-INDLWIAAVAAS----RAL--PVITQDDDFAALDG 141 (150)
T ss_dssp HHHHHHHHHHTCC----CB-HHHHHHHHHHHH----TTC--CEEESSSSGGGGTT
T ss_pred HHHHHHHHHcCCC----CC-CchHHHHHHHHH----CCC--EEEECChhhhhCCC
Confidence 3455555566753 23 789999998875 343 48999999988754
No 131
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=21.98 E-value=26 Score=31.14 Aligned_cols=106 Identities=19% Similarity=0.304 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCcE----EeeCCc-h-HHHHHHHHHHHhhHhCCCeEEEEcC-CCccccccCC-CeEEEe--CcEeeeHhH
Q psy14489 90 LIHQMVKAIGWPI----LIIKGV-E-ADDVIGTLAKQAVTKHNLKVIISTN-DKDMAQLVSN-KIALIN--NNKIHDRTT 159 (284)
Q Consensus 90 ~i~~~l~~~gi~~----~~~~g~-E-ADD~ia~la~~~~~~~~~~v~I~S~-DkDl~ql~~~-~v~~~~--~~~~~~~~~ 159 (284)
-+.++|+..|++. +.+-|. + .=--+|.+.. . .+..|.|+.+ -+|+-..... .+-+-- ....++.++
T Consensus 147 gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~---~-~gAtVtv~hs~T~~L~~~~~~ADIVI~Avg~p~~I~~~~ 222 (286)
T 4a5o_A 147 GIMTLLASTGADLYGMDAVVVGASNIVGRPMALELL---L-GGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEW 222 (286)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHH---H-TTCEEEEECTTCSCHHHHHHTCSEEEECCCCTTCBCGGG
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHH---H-CCCeEEEEeCCCcCHHHHhccCCEEEECCCCCCCCCHHH
Confidence 3567888776631 222231 1 2233333322 2 5778888855 3455444433 232222 334566666
Q ss_pred HHHH-----hCCChhHHHhhhhhcCCC--------CCCCCCCC-ccChhhHHHHHHh
Q psy14489 160 IISR-----FGVSPEKIVDYFSLIGDM--------SDNLPGVK-KIGPKTAVKLLNQ 202 (284)
Q Consensus 160 ~~~~-----~G~~p~q~~~~~~L~GD~--------sDni~Gv~-giG~ktA~~LL~~ 202 (284)
+++- .|.+|. .+- -|+||- +-.|..|| |+||.|.+-|++.
T Consensus 223 vk~GavVIDvgi~~~--~~g-kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~n 276 (286)
T 4a5o_A 223 IKEGAIVIDVGINRQ--ADG-RLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLEN 276 (286)
T ss_dssp SCTTCEEEECCSCSS--CCC-CSSCSBCHHHHHHHCSEECCSSCSHHHHHHHHHHHH
T ss_pred cCCCeEEEEeccccc--ccC-CcccCccHHHHHhhceEeCCCCCcchHHHHHHHHHH
Confidence 6431 344431 111 377773 12467787 5999999999874
No 132
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=21.66 E-value=23 Score=31.46 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=42.2
Q ss_pred CCeEEEEcCC-CccccccCC-CeEEEe--CcEeeeHhHHHHH-----hCCChhHHHhhhhhcCCCCC-------CCCCCC
Q psy14489 126 NLKVIISTND-KDMAQLVSN-KIALIN--NNKIHDRTTIISR-----FGVSPEKIVDYFSLIGDMSD-------NLPGVK 189 (284)
Q Consensus 126 ~~~v~I~S~D-kDl~ql~~~-~v~~~~--~~~~~~~~~~~~~-----~G~~p~q~~~~~~L~GD~sD-------ni~Gv~ 189 (284)
+..|.++.+. +|+...... .+-+-- ....++.+++++. .|+++ ..+- |+||-.+ .|..||
T Consensus 184 ~atVtv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~r--~~~g--lvGDVd~~v~~~a~~iTPVP 259 (281)
T 2c2x_A 184 NATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSR--TDDG--LVGDVHPDVWELAGHVSPNP 259 (281)
T ss_dssp CCEEEEECTTCSCHHHHHTTCSEEEECSCCTTCBCGGGSCTTCEEEECCEEE--ETTE--EEESBCGGGGGTCSEEECSS
T ss_pred CCEEEEEECchhHHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEccCCC--CCCC--ccCccccchhhheeeecCCC
Confidence 6678888443 566555544 333332 3345777776431 23322 1122 8898432 344566
Q ss_pred -ccChhhHHHHHHh
Q psy14489 190 -KIGPKTAVKLLNQ 202 (284)
Q Consensus 190 -giG~ktA~~LL~~ 202 (284)
|+||.|.+-|++.
T Consensus 260 GGVGpmT~a~Ll~n 273 (281)
T 2c2x_A 260 GGVGPLTRAFLLTN 273 (281)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 7999999999874
No 133
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=21.49 E-value=33 Score=31.18 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=13.7
Q ss_pred CCCCccChhhHHHHHHh
Q psy14489 186 PGVKKIGPKTAVKLLNQ 202 (284)
Q Consensus 186 ~Gv~giG~ktA~~LL~~ 202 (284)
-.+||||++||.-++.-
T Consensus 121 ~~l~GIG~~tA~~il~~ 137 (369)
T 3fsp_A 121 SRLKGVGPYTVGAVLSL 137 (369)
T ss_dssp HTSTTCCHHHHHHHHHH
T ss_pred hcCCCcCHHHHHHHHHH
Confidence 45899999999887663
No 134
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=21.29 E-value=33 Score=27.44 Aligned_cols=17 Identities=12% Similarity=0.280 Sum_probs=15.4
Q ss_pred CCccChhhHHHHHHhcC
Q psy14489 188 VKKIGPKTAVKLLNQYN 204 (284)
Q Consensus 188 v~giG~ktA~~LL~~~g 204 (284)
|.|||..+|..++++.|
T Consensus 35 I~GIG~~~A~~I~~~~g 51 (146)
T 3u5c_S 35 IKGVGRRYSNLVCKKAD 51 (146)
T ss_dssp STTCCHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHcC
Confidence 78999999999998866
No 135
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=21.20 E-value=58 Score=22.34 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCCCCCCccChhhHHHHHH-hcCCHHHHHHh
Q psy14489 183 DNLPGVKKIGPKTAVKLLN-QYNSLENIINN 212 (284)
Q Consensus 183 Dni~Gv~giG~ktA~~LL~-~~gsle~i~~~ 212 (284)
|.+--++|||+.++.+|-. .+.|++.+-..
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~ 37 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAARGVCTLEDLAEQ 37 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTTTCCSHHHHHTS
T ss_pred hHHHHcCCCCHHHHHHHHHcCCCcHHHHHcC
Confidence 3444577999999999887 67789887543
No 136
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=20.49 E-value=33 Score=26.60 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=27.2
Q ss_pred CCchHHHHHHHHHHHhhHhCCCeEEEEcCCCccccccCC-CeEEEe
Q psy14489 106 KGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSN-KIALIN 150 (284)
Q Consensus 106 ~g~EADD~ia~la~~~~~~~~~~v~I~S~DkDl~ql~~~-~v~~~~ 150 (284)
.| . |+.|+.+|... + .+++|.|++|...... +|.+.+
T Consensus 97 ~~-~-D~~Ila~A~~~----~--~~LvT~D~~l~~~a~~~Gv~vi~ 134 (147)
T 1o4w_A 97 SE-G-DPSLIEAAEKY----G--CILITNDKELKRKAKQRGIPVGY 134 (147)
T ss_dssp SC-S-HHHHHHHHHHH----T--CEEECCCHHHHHHHHHTTCCEEC
T ss_pred CC-c-hHHHHHHHHHh----C--CEEEECCHHHHHHHHHCCCeEEE
Confidence 45 5 99999999752 3 6899999999876542 565554
No 137
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=20.47 E-value=72 Score=23.24 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=20.8
Q ss_pred CCCCCCccChhhHHHHHH-hcCCHHHHHH
Q psy14489 184 NLPGVKKIGPKTAVKLLN-QYNSLENIIN 211 (284)
Q Consensus 184 ni~Gv~giG~ktA~~LL~-~~gsle~i~~ 211 (284)
.+.-+|+||++++..|.+ ...|++++-.
T Consensus 5 ~L~~LPNiG~~~e~~L~~vGI~s~e~L~~ 33 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKD 33 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcCCCCHHHHHh
Confidence 456689999999888866 4557777643
No 138
>3kzs_A Glycosyl hydrolase family 5; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=20.35 E-value=5.4e+02 Score=24.14 Aligned_cols=62 Identities=11% Similarity=-0.072 Sum_probs=44.6
Q ss_pred CCCCCh--hHHHHHHHHHHHHHhcCCcEEeeC------------CchHHHHHHHHHHHhhHhCCCeEEEEcCCCccc
Q psy14489 77 RKKMPY--NLILQINLIHQMVKAIGWPILIIK------------GVEADDVIGTLAKQAVTKHNLKVIISTNDKDMA 139 (284)
Q Consensus 77 R~~~p~--~l~~q~~~i~~~l~~~gi~~~~~~------------g~EADD~ia~la~~~~~~~~~~v~I~S~DkDl~ 139 (284)
|...|. ++.+.++.+.+.+...||..-.++ .-+|...+..++.++.. ....+.++++|.|+.
T Consensus 96 ~~n~pn~~~YF~h~d~~I~~a~~~Gi~~~Lv~~Wg~~v~~~~m~~e~~~~Y~ryl~~Ry~~-~~NiiW~lgGD~~~~ 171 (463)
T 3kzs_A 96 NINQKGVYGYWDHMDYIIRTAAKKGLYIGMVCIWGSPVSHGEMNVDQAKAYGKFLAERYKD-EPNIIWFIGGDIRGD 171 (463)
T ss_dssp TCCCTTCCCHHHHHHHHHHHHHHTTCEEEEESSCHHHHHTTSCCHHHHHHHHHHHHHHHTT-CSSEEEEEESSSCTT
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEeCCccccCCCCHHHHHHHHHHHHHHhcc-CCCCEEEeCCCCCCc
Confidence 555553 788889999999999998664322 23455666667777764 334689999999985
No 139
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=20.24 E-value=40 Score=27.19 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.9
Q ss_pred CCCccChhhHHHHHHhcC
Q psy14489 187 GVKKIGPKTAVKLLNQYN 204 (284)
Q Consensus 187 Gv~giG~ktA~~LL~~~g 204 (284)
.|.|||..+|..++++.|
T Consensus 34 ~I~GIG~~~A~~I~~~~g 51 (155)
T 2xzm_M 34 GIRGIGRRFAYIICKVLK 51 (155)
T ss_dssp TSTTCCHHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHHcC
Confidence 488999999999999876
No 140
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=20.18 E-value=26 Score=29.99 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=38.6
Q ss_pred CCEEEEEEeCCCCcc-cccc-CchhhhCCCCCChhHHHHHHHHHHHHHhcCCcEEeeC----------CchHHHHHHHHH
Q psy14489 51 ATYIACIFDAKGKNF-RNIL-YPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIK----------GVEADDVIGTLA 118 (284)
Q Consensus 51 ~~~~i~~fD~~~~~~-R~~l-~~~YKa~R~~~p~~l~~q~~~i~~~l~~~gi~~~~~~----------g~EADD~ia~la 118 (284)
|.|++|+.|| +..| |+.- .|...++|... ..+..+.+++..+||+++..- ..|=+.++.-+.
T Consensus 3 P~HvAiImDG-N~RwA~~~g~l~~~~GH~~G~-----~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~ 76 (227)
T 2vg0_A 3 PRHIAVLCDG-NRRWARSAGYDDVSYGYRMGA-----AKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIIT 76 (227)
T ss_dssp CSEEEEECCC-HHHHHHHTTCSCTHHHHHHHH-----HHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEecC-ChHHHHHcCCCchhHHHHHHH-----HHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHH
Confidence 7899999997 3334 2222 34444444431 223345566677899988743 346666666655
Q ss_pred HHhh
Q psy14489 119 KQAV 122 (284)
Q Consensus 119 ~~~~ 122 (284)
....
T Consensus 77 ~~l~ 80 (227)
T 2vg0_A 77 DVVE 80 (227)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
Done!