Your job contains 1 sequence.
>psy14489
MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA
KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ
AVTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTTIISRFGVSPEKIVDYFSLIGD
MSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTI
KTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKLNFLMH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14489
(284 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CBU_1795 - symbol:CBU_1795 "DNA polymerase I" sp... 578 1.5e-55 1
TIGR_CMR|CPS_4978 - symbol:CPS_4978 "DNA polymerase I" sp... 526 9.0e-50 1
UNIPROTKB|Q9KVN3 - symbol:VC_0108 "DNA polymerase I" spec... 520 4.0e-49 1
TIGR_CMR|VC_0108 - symbol:VC_0108 "DNA polymerase I" spec... 520 4.0e-49 1
UNIPROTKB|P00582 - symbol:polA species:83333 "Escherichia... 516 1.1e-48 1
TIGR_CMR|SO_4669 - symbol:SO_4669 "DNA polymerase I" spec... 501 4.4e-47 1
UNIPROTKB|Q48PV5 - symbol:polA "DNA polymerase I" species... 484 3.0e-45 1
TIGR_CMR|GSU_0541 - symbol:GSU_0541 "DNA polymerase I" sp... 457 2.2e-42 1
TIGR_CMR|ECH_0080 - symbol:ECH_0080 "DNA polymerase I" sp... 411 2.4e-37 1
UNIPROTKB|Q0C2B4 - symbol:polA "DNA polymerase I" species... 402 2.1e-36 1
TIGR_CMR|NSE_0675 - symbol:NSE_0675 "DNA polymerase I" sp... 378 6.1e-34 1
UNIPROTKB|Q3ABL3 - symbol:polA "DNA polymerase" species:2... 378 6.2e-34 1
TIGR_CMR|CHY_1650 - symbol:CHY_1650 "DNA polymerase I" sp... 378 6.2e-34 1
TIGR_CMR|APH_0001 - symbol:APH_0001 "DNA polymerase I" sp... 374 1.8e-33 1
TIGR_CMR|SPO_3844 - symbol:SPO_3844 "DNA polymerase I" sp... 374 2.2e-33 1
UNIPROTKB|P0A550 - symbol:polA "DNA polymerase I" species... 366 1.5e-32 1
TIGR_CMR|BA_4831 - symbol:BA_4831 "DNA polymerase I" spec... 365 1.8e-32 1
TIGR_CMR|DET_1391 - symbol:DET_1391 "DNA-directed DNA pol... 363 3.1e-32 1
TIGR_CMR|CJE_0383 - symbol:CJE_0383 "DNA polymerase type ... 323 5.8e-28 1
TIGR_CMR|BA_1606 - symbol:BA_1606 "5'-3' exonuclease fami... 306 2.8e-27 1
TAIR|locus:2083775 - symbol:AT3G52050 species:3702 "Arabi... 248 4.3e-25 2
GENEDB_PFALCIPARUM|PFB0180w - symbol:PFB0180w "5'-3' exon... 195 2.9e-23 2
UNIPROTKB|O96139 - symbol:PFB0180w "5'-3' exonuclease, N-... 195 2.9e-23 2
UNIPROTKB|Q9KTK4 - symbol:xni "Protein Xni" species:24327... 262 1.3e-22 1
TIGR_CMR|VC_0898 - symbol:VC_0898 "exodeoxyribonuclease I... 262 1.3e-22 1
TIGR_CMR|SO_1549 - symbol:SO_1549 "exodeoxyribonuclease I... 232 1.9e-19 1
UNIPROTKB|Q47YA8 - symbol:xni "Protein Xni" species:16787... 227 6.5e-19 1
TIGR_CMR|CPS_3538 - symbol:CPS_3538 "exodeoxyribonuclease... 227 6.5e-19 1
UNIPROTKB|P38506 - symbol:ygdG "YgdG" species:83333 "Esch... 209 5.3e-17 1
TAIR|locus:2036293 - symbol:AT1G34380 species:3702 "Arabi... 182 1.3e-12 1
UNIPROTKB|Q10699 - symbol:MT2151 "5'-3' exonuclease" spec... 167 1.3e-10 1
DICTYBASE|DDB_G0267464 - symbol:polA "mitochondrial DNA p... 172 3.6e-10 1
>TIGR_CMR|CBU_1795 [details] [associations]
symbol:CBU_1795 "DNA polymerase I" species:227377
"Coxiella burnetii RSA 493" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_820774.2 ProteinModelPortal:Q83AT5 PRIDE:Q83AT5
GeneID:1209706 KEGG:cbu:CBU_1795 PATRIC:17932329
BioCyc:CBUR227377:GJ7S-1767-MONOMER Uniprot:Q83AT5
Length = 902
Score = 578 (208.5 bits), Expect = 1.5e-55, P = 1.5e-55
Identities = 118/273 (43%), Positives = 174/273 (63%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
L+L+DGSS ++RA+YALP + N P GA+YG I MLRKL Y+ Y+A +FD KGK
Sbjct: 16 LILIDGSSYLFRAYYALPPLTNRKGQPTGAMYGVINMLRKLMVEYQPDYVAVVFDPKGKT 75
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR+ LY +YKA R +MP L QI + ++++A+G+P++I +G EADDVI TLAK+A K
Sbjct: 76 FRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIATLAKKAKEK 135
Query: 125 HNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMS 182
+ V++ST DKD+AQ+V+ + L+N +++ + ++ +FGV PEKI+DY +L GD +
Sbjct: 136 -GMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTLTGDTT 194
Query: 183 DNLPGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXXXXXXX 242
DN+PGV K+GPKTAVK L+QY+S+E LR ++ LP
Sbjct: 195 DNIPGVPKVGPKTAVKWLSQYDSVENLIKHANEIKGKVGENLRACIDDLPLMRRLVTVIS 254
Query: 243 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKYK 275
D L +N P LI K+ + L++LF +Y+
Sbjct: 255 DLPLEEN----PTDLIQTEKNREKLIELFTEYE 283
>TIGR_CMR|CPS_4978 [details] [associations]
symbol:CPS_4978 "DNA polymerase I" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_271617.1 ProteinModelPortal:Q47UA6 SMR:Q47UA6
STRING:Q47UA6 GeneID:3519378 KEGG:cps:CPS_4978 PATRIC:21472749
BioCyc:CPSY167879:GI48-4979-MONOMER Uniprot:Q47UA6
Length = 936
Score = 526 (190.2 bits), Expect = 9.0e-50, P = 9.0e-50
Identities = 119/282 (42%), Positives = 167/282 (59%)
Query: 2 QNTLLLVDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
Q+ L+LVDGSS ++RA++ L + D P GA+ G + M R L K+Y I IFD
Sbjct: 14 QSPLILVDGSSYLFRAYHVPYLQALSTADGQPTGAITGVLNMFRSLKKDYPNGNIIAIFD 73
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
AKGK FRN ++P YKA R MP +L QI IH+++ A+G P+L+I GVEADDVIGTLAK
Sbjct: 74 AKGKTFRNDMFPEYKANRPPMPDDLRTQIAPIHEIITAMGLPLLVIPGVEADDVIGTLAK 133
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALINN-NKIH-DRTTIISRFGVSPEKIVDYFSL 177
QA + ++ +IST DKDMAQLV+ + LIN + D + +FGV P++I+DY +L
Sbjct: 134 QA-DELGIETVISTGDKDMAQLVTKHVRLINTMTDVEMDVAGVSEKFGVRPDQIIDYLAL 192
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXX 237
+GD DN+PGV K GPKTAVK L ++ +++ LR AL LP
Sbjct: 193 MGDKVDNIPGVVKCGPKTAVKWLAEHGTMQEVIANADKVKGKIGENLRDALEQLPLSYQL 252
Query: 238 XXXXXDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D +L + + S +P D L +L+ K++L +L
Sbjct: 253 ATIKCDVELEQTAGELAAS---EP-DVDALAELYQKFELKRL 290
>UNIPROTKB|Q9KVN3 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 520 (188.1 bits), Expect = 4.0e-49, P = 4.0e-49
Identities = 113/276 (40%), Positives = 157/276 (56%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXXXXX 240
DN+PGV +G KTA LL LE + L
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKL 245
Query: 241 XXDCDLTKNIVSI---PESLILQPKDEKLLMQLFNK 273
K V + P++L+ Q D LM L+ K
Sbjct: 246 SYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGK 281
>TIGR_CMR|VC_0108 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 520 (188.1 bits), Expect = 4.0e-49, P = 4.0e-49
Identities = 113/276 (40%), Positives = 157/276 (56%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+L+DGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKG
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FR+ +Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA
Sbjct: 67 KTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ + V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD
Sbjct: 126 SQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXXXXX 240
DN+PGV +G KTA LL LE + L
Sbjct: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKL 245
Query: 241 XXDCDLTKNIVSI---PESLILQPKDEKLLMQLFNK 273
K V + P++L+ Q D LM L+ K
Sbjct: 246 SYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGK 281
>UNIPROTKB|P00582 [details] [associations]
symbol:polA species:83333 "Escherichia coli K-12"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IDA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA;IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA;IMP]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0006261
GO:GO:0005622 SUPFAM:SSF53098 EMBL:L19201 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
EMBL:V00317 EMBL:J01663 EMBL:J01664 PIR:A92360 RefSeq:NP_418300.1
RefSeq:YP_491586.1 PDB:1D8Y PDB:1D9D PDB:1D9F PDB:1DPI PDB:1KFD
PDB:1KFS PDB:1KLN PDB:1KRP PDB:1KSP PDB:1QSL PDB:2KFN PDB:2KFZ
PDB:2KZM PDB:2KZZ PDBsum:1D8Y PDBsum:1D9D PDBsum:1D9F PDBsum:1DPI
PDBsum:1KFD PDBsum:1KFS PDBsum:1KLN PDBsum:1KRP PDBsum:1KSP
PDBsum:1QSL PDBsum:2KFN PDBsum:2KFZ PDBsum:2KZM PDBsum:2KZZ
ProteinModelPortal:P00582 SMR:P00582 DIP:DIP-10524N IntAct:P00582
MINT:MINT-1225247 SWISS-2DPAGE:P00582 PaxDb:P00582 PRIDE:P00582
EnsemblBacteria:EBESCT00000001399 EnsemblBacteria:EBESCT00000014390
GeneID:12933188 GeneID:948356 KEGG:ecj:Y75_p3322 KEGG:eco:b3863
PATRIC:32123225 EchoBASE:EB0739 EcoGene:EG10746
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
BioCyc:EcoCyc:EG10746-MONOMER BioCyc:ECOL316407:JW3835-MONOMER
BioCyc:MetaCyc:EG10746-MONOMER SABIO-RK:P00582 BindingDB:P00582
ChEMBL:CHEMBL4298 DrugBank:DB00548 EvolutionaryTrace:P00582
Genevestigator:P00582 TIGRFAMs:TIGR00593 Uniprot:P00582
Length = 928
Score = 516 (186.7 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 120/283 (42%), Positives = 160/283 (56%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
QN L+LVDGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAK
Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
GK FR+ L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A
Sbjct: 66 GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIG 179
K V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+G
Sbjct: 126 -EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 184
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXXXX 239
D SDN+PGV +G KTA LL L+ + L
Sbjct: 185 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNKEVAY 244
Query: 240 XXXDCDLTKNIVSIP---ESL-ILQPKDEKLLMQLFNKYKLNK 278
K V + E L + QP E+LL LF KY+ +
Sbjct: 245 LSYQLATIKTDVELELTCEQLEVQQPAAEELL-GLFKKYEFKR 286
>TIGR_CMR|SO_4669 [details] [associations]
symbol:SO_4669 "DNA polymerase I" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 HSSP:P00582 HOGENOM:HOG000020999
RefSeq:NP_720184.1 ProteinModelPortal:Q8E8J5 GeneID:1172251
KEGG:son:SO_4669 PATRIC:23529003 ProtClustDB:CLSK907759
Uniprot:Q8E8J5
Length = 922
Score = 501 (181.4 bits), Expect = 4.4e-47, P = 4.4e-47
Identities = 99/206 (48%), Positives = 142/206 (68%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L+LVDGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAKG
Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAVVFDAKG 66
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
K FRN LY YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A++A
Sbjct: 67 KTFRNDLYQEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIARRA- 125
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
++ N V+IST DKDMAQLV I LIN + I + +++GV P++I+D+ +L+GD
Sbjct: 126 SRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFLALMGD 185
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSL 206
+DN+PG+ +G KTA+ +L S+
Sbjct: 186 KADNIPGLPGVGEKTALAMLTGAGSV 211
>UNIPROTKB|Q48PV5 [details] [associations]
symbol:polA "DNA polymerase I" species:264730 "Pseudomonas
syringae pv. phaseolicola 1448A" [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_272564.1 ProteinModelPortal:Q48PV5 SMR:Q48PV5
STRING:Q48PV5 GeneID:3558423 KEGG:psp:PSPPH_0259 PATRIC:19969530
Uniprot:Q48PV5
Length = 921
Score = 484 (175.4 bits), Expect = 3.0e-45, P = 3.0e-45
Identities = 99/201 (49%), Positives = 131/201 (65%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
Q L+L+DGSS +YRAF+ALP + P GA+ G + ML+ L + Y + A +FDAK
Sbjct: 3 QAPLVLIDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRRQYPDSPFAVVFDAK 62
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
G FR+ LY YKA R MP +L +Q++L+H VK +G+P+L ++GVEADDVIGTLA+ +
Sbjct: 63 GGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLARSS 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIG 179
VIIST DKDMAQLV I L+N D + +FGV PE I+DY +L+G
Sbjct: 123 AAADR-PVIISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVGPEHIIDYLALMG 181
Query: 180 DMSDNLPGVKKIGPKTAVKLL 200
D DN+PGV +G KTAV LL
Sbjct: 182 DKVDNIPGVPGVGEKTAVGLL 202
>TIGR_CMR|GSU_0541 [details] [associations]
symbol:GSU_0541 "DNA polymerase I" species:243231
"Geobacter sulfurreducens PCA" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HSSP:P00582
RefSeq:NP_951599.1 ProteinModelPortal:Q74FR5 SMR:Q74FR5
GeneID:2685802 KEGG:gsu:GSU0541 PATRIC:22023837
BioCyc:GSUL243231:GH27-525-MONOMER Uniprot:Q74FR5
Length = 891
Score = 457 (165.9 bits), Expect = 2.2e-42, P = 2.2e-42
Identities = 103/282 (36%), Positives = 158/282 (56%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
+TL L+DGSS IYRA++A+ + + FP ALYG +ML K+ K++ +A +FD KG
Sbjct: 4 DTLFLIDGSSYIYRAYFAIRHLSSPAGFPTNALYGFTQMLLKVIKDHHPGRLAVVFD-KG 62
Query: 63 KN-FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
+ FR +YP YKA R MP +L+ QI I +MV+A P+L ++G EADD+IGT+A++
Sbjct: 63 RTTFRTEIYPDYKANRAAMPDDLVPQIGPIKEMVRAFSIPVLELEGYEADDIIGTIARRC 122
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTT----IISRFGVSPEKIVDYFSL 177
+ L+ ++ T DKD+ Q+VS++I L++ K DR + ++ RFGV P +++D L
Sbjct: 123 -EEQGLEAVVVTGDKDLMQIVSDRIRLLDTMK--DRVSGIPEVVERFGVGPGQVIDILGL 179
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXX 237
GD SDN+PGV IG KTA KL+ ++ SL+ LR
Sbjct: 180 AGDTSDNIPGVPGIGEKTATKLIQEFGSLDALLERAGEVKGKTGERLREFAEQARLSRRL 239
Query: 238 XXXXXDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D L ++ ++ + P D + L +LF +Y L
Sbjct: 240 ATIVRDVPLDFDL----DAFAVAPADNRRLAELFKEYGFTTL 277
>TIGR_CMR|ECH_0080 [details] [associations]
symbol:ECH_0080 "DNA polymerase I" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_506910.1 ProteinModelPortal:Q2GI23
STRING:Q2GI23 GeneID:3927608 KEGG:ech:ECH_0080 PATRIC:20575721
BioCyc:ECHA205920:GJNR-80-MONOMER Uniprot:Q2GI23
Length = 944
Score = 411 (149.7 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 80/203 (39%), Positives = 123/203 (60%)
Query: 7 LVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFR 66
++D ++RA+YALP++R P+G +YG I + K + + Y+ +FD KNFR
Sbjct: 6 IIDAYGLLFRAYYALPNLRTSYGLPIGGVYGFINIFLKYIEKHVTDYLVVVFDTGSKNFR 65
Query: 67 NILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHN 126
+ +YP YK R K+P +LI Q +L+ + V A + G EADDVI TL+K+
Sbjct: 66 HNIYPEYKGNRPKLPDDLIPQFSLLREAVNAFNIASEEVVGYEADDVIATLSKKYCKLQG 125
Query: 127 LKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDN 184
+KV + T+DKD+ QL+ I + + NK + + S+FG+S +++D+ SL GD SDN
Sbjct: 126 VKVTVVTSDKDLLQLLKYNICIFDPIKNKYIEEEDVQSKFGISSNQLLDFLSLTGDASDN 185
Query: 185 LPGVKKIGPKTAVKLLNQYNSLE 207
+PG+ IG KTA KLLN + SL+
Sbjct: 186 VPGIPGIGVKTAAKLLNDFGSLD 208
>UNIPROTKB|Q0C2B4 [details] [associations]
symbol:polA "DNA polymerase I" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_760129.1 ProteinModelPortal:Q0C2B4
STRING:Q0C2B4 GeneID:4289511 KEGG:hne:HNE_1412 PATRIC:32215643
HOGENOM:HOG000020999 BioCyc:HNEP228405:GI69-1446-MONOMER
Uniprot:Q0C2B4
Length = 929
Score = 402 (146.6 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 90/210 (42%), Positives = 127/210 (60%)
Query: 5 LLLVDGSSCIYRAFYALPDI-RNIDNFPVGALYGTIKMLRKLYKNY----RATYIACIFD 59
L L+D S+ ++RAF+ALP + R D PVGA+ G ML KL ++ R T+ ACIFD
Sbjct: 12 LYLIDASAYVFRAFHALPPLTRASDGLPVGAVAGFCNMLFKLLEDLKGKERPTHFACIFD 71
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
A G FRN +YP YKA R P L+ Q L+ + A + G EADD+I T A+
Sbjct: 72 ASGDTFRNEIYPLYKANRSDPPEELVPQFPLVRRAAVAFAAHAIEQTGFEADDLIATYAR 131
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
A K +V I ++DKD+ QL+++K+ +++ NK+ R +I +FGV PE +VD SL
Sbjct: 132 LAEAK-GARVTIVSSDKDLMQLITDKVLMLDPMKNKLLGRDDVIEKFGVGPEGVVDVQSL 190
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
GD DN+PG IG KTA +LL +Y ++E
Sbjct: 191 SGDSVDNVPGAPGIGIKTAAQLLGEYGTVE 220
>TIGR_CMR|NSE_0675 [details] [associations]
symbol:NSE_0675 "DNA polymerase I" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335
OMA:EQRRYAK ProtClustDB:PRK05755 RefSeq:YP_506553.1
ProteinModelPortal:Q2GD93 STRING:Q2GD93 GeneID:3932157
KEGG:nse:NSE_0675 PATRIC:22681369
BioCyc:NSEN222891:GHFU-689-MONOMER Uniprot:Q2GD93
Length = 829
Score = 378 (138.1 bits), Expect = 6.1e-34, P = 6.1e-34
Identities = 81/209 (38%), Positives = 127/209 (60%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M TL+++D + ++ A++ALP++ + + PVGA+YG + +L K + + Y+ D
Sbjct: 1 MSETLMIIDAYNFLFSAYFALPNLTH-NELPVGAVYGFLNILLKHLRT-KPEYLVVALDH 58
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
FR +Y +YKA R +P NL Q L+ + V + L I+G EADDVI TL ++
Sbjct: 59 GKSTFRETIYNNYKANRPPVPGNLTPQFALLRECVDVLNLNPLEIEGFEADDVIATLVRK 118
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLI 178
+K +LK+ I + DKD+ QLV+ + +IN N+I + +FGV P ++ D+ SL+
Sbjct: 119 -FSKSDLKIKILSTDKDLMQLVNENVHVINPIKNRIIGVNEVKEKFGVFPTQMTDFLSLV 177
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
GD SDN+PGV IG KTA KLLN + ++E
Sbjct: 178 GDTSDNIPGVPGIGVKTAAKLLNTFGAIE 206
>UNIPROTKB|Q3ABL3 [details] [associations]
symbol:polA "DNA polymerase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278 SMART:SM00279
SMART:SM00475 SMART:SM00482 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_360471.1 ProteinModelPortal:Q3ABL3
STRING:Q3ABL3 GeneID:3728305 KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 378 (138.1 bits), Expect = 6.2e-34, P = 6.2e-34
Identities = 80/209 (38%), Positives = 125/209 (59%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDG+S ++RAF+ALP ++ P GA+YG + ML ++ K+ + Y+A FD K
Sbjct: 4 VVLVDGNSLLHRAFFALPPLKTTKGEPTGAVYGFLTMLFRVIKDEKPEYLAVAFDISRKT 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR + +YK RK+ P L+ Q L+ +++K + P + + G EADD+IG L++ A
Sbjct: 64 FRTEQFTAYKGHRKEAPDELVPQFALVREVLKVLNVPYIELDGYEADDIIGHLSR-AFAG 122
Query: 125 HNLKVIISTNDKDMAQLVSNK-IALINNNKIH-----DRTTIISRFGVSPEKIVDYFSLI 178
+V+I T D+DM QLV K + + I D I+ +G+ P+++VD L+
Sbjct: 123 QGHEVVIYTADRDMLQLVDEKTVVYLTKKGITELVKMDLAAILENYGLKPKQLVDVKGLM 182
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
GD SDN+PGV IG KTA+ L+ Y S+E
Sbjct: 183 GDPSDNIPGVPGIGEKTALDLIKTYGSVE 211
>TIGR_CMR|CHY_1650 [details] [associations]
symbol:CHY_1650 "DNA polymerase I" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 RefSeq:YP_360471.1
ProteinModelPortal:Q3ABL3 STRING:Q3ABL3 GeneID:3728305
KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 378 (138.1 bits), Expect = 6.2e-34, P = 6.2e-34
Identities = 80/209 (38%), Positives = 125/209 (59%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN 64
++LVDG+S ++RAF+ALP ++ P GA+YG + ML ++ K+ + Y+A FD K
Sbjct: 4 VVLVDGNSLLHRAFFALPPLKTTKGEPTGAVYGFLTMLFRVIKDEKPEYLAVAFDISRKT 63
Query: 65 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 124
FR + +YK RK+ P L+ Q L+ +++K + P + + G EADD+IG L++ A
Sbjct: 64 FRTEQFTAYKGHRKEAPDELVPQFALVREVLKVLNVPYIELDGYEADDIIGHLSR-AFAG 122
Query: 125 HNLKVIISTNDKDMAQLVSNK-IALINNNKIH-----DRTTIISRFGVSPEKIVDYFSLI 178
+V+I T D+DM QLV K + + I D I+ +G+ P+++VD L+
Sbjct: 123 QGHEVVIYTADRDMLQLVDEKTVVYLTKKGITELVKMDLAAILENYGLKPKQLVDVKGLM 182
Query: 179 GDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
GD SDN+PGV IG KTA+ L+ Y S+E
Sbjct: 183 GDPSDNIPGVPGIGEKTALDLIKTYGSVE 211
>TIGR_CMR|APH_0001 [details] [associations]
symbol:APH_0001 "DNA polymerase I" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_504640.1 ProteinModelPortal:Q2GLW1 STRING:Q2GLW1
GeneID:3930741 KEGG:aph:APH_0001 PATRIC:20948540
BioCyc:APHA212042:GHPM-43-MONOMER Uniprot:Q2GLW1
Length = 853
Score = 374 (136.7 bits), Expect = 1.8e-33, P = 1.8e-33
Identities = 80/208 (38%), Positives = 124/208 (59%)
Query: 2 QNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
+ + ++VD ++RA+YALP + NFPVG +YG I +L K + A Y+ +FD+
Sbjct: 4 KKSFVIVDAYGFLFRAYYALPGLSTSYNFPVGGVYGFINILLKHLSFHDADYLVVVFDSG 63
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
KNFR+ +Y YK R K P +L LQ + + V+A + EADDVI TL +
Sbjct: 64 SKNFRHTMYSEYKTNRPKAPEDLSLQCAPLREAVEAFNIVSEEVLNYEADDVIATLCTKY 123
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTT--IISRFGVSPEKIVDYFSLIG 179
+ N+ V I + DKD+ QL+++ + + + K T ++ +FGVS +K++D +L G
Sbjct: 124 ASS-NVGVRILSADKDLLQLLNDNVQVYDPIKSRYLTNEYVLEKFGVSSDKLLDAMALTG 182
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
D SDN+PGV IG KTA KL+N++ SL+
Sbjct: 183 DASDNIPGVPSIGVKTAAKLINEFGSLD 210
>TIGR_CMR|SPO_3844 [details] [associations]
symbol:SPO_3844 "DNA polymerase I" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279
SMART:SM00474 SMART:SM00475 SMART:SM00482 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HOGENOM:HOG000020999 RefSeq:YP_169032.1
ProteinModelPortal:Q5LLS7 GeneID:3195865 KEGG:sil:SPO3844
PATRIC:23381191 Uniprot:Q5LLS7
Length = 933
Score = 374 (136.7 bits), Expect = 2.2e-33, P = 2.2e-33
Identities = 87/210 (41%), Positives = 123/210 (58%)
Query: 5 LLLVDGSSCIYRAFYALPDI-RNIDNFPVGALYGTIKMLRKLYKNYRA----TYIACIFD 59
L L+DGS+ I+RA++ALP + R D P+GA+ G ML++ T++A IFD
Sbjct: 10 LHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVDGDHGPDAPTHLAVIFD 69
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
FRN LY YKA R+ MP +L QI L +A P ++G EADD+I TL+
Sbjct: 70 KGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRAATEAFNIPCKELEGYEADDIIATLSN 129
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 177
QA +V I ++DKD+ QLV + + + + NK DR + +FGV P+++VD +L
Sbjct: 130 QARDAGG-RVTIVSSDKDLMQLVGDGVEMFDAMKNKRIDRDGVFEKFGVFPDRVVDVQAL 188
Query: 178 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
GD DN+PG IG KTA L+N+Y SLE
Sbjct: 189 AGDSVDNVPGAPGIGVKTAALLINEYGSLE 218
>UNIPROTKB|P0A550 [details] [associations]
symbol:polA "DNA polymerase I" species:1773 "Mycobacterium
tuberculosis" [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:BX842577 GO:GO:0005622
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 EMBL:L11920 PIR:C70559
RefSeq:NP_216145.1 RefSeq:NP_336121.1 RefSeq:YP_006515018.1
ProteinModelPortal:P0A550 SMR:P0A550 PRIDE:P0A550
EnsemblBacteria:EBMYCT00000000077 EnsemblBacteria:EBMYCT00000072282
GeneID:13316408 GeneID:885074 GeneID:924198 KEGG:mtc:MT1665
KEGG:mtu:Rv1629 KEGG:mtv:RVBD_1629 PATRIC:18125424
TubercuList:Rv1629 HOGENOM:HOG000020997 Uniprot:P0A550
Length = 904
Score = 366 (133.9 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 93/284 (32%), Positives = 144/284 (50%)
Query: 4 TLLLVDGSSCIYRAFYALP--DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK 61
TL+L+DG+S +RAFYALP + + A+YG ML L ++ T+IA FD
Sbjct: 16 TLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDEAPTHIAAAFDVS 75
Query: 62 GKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQA 121
+ FR YP YKA R P QI++ +++ A+G +L G EADD+I TLA QA
Sbjct: 76 RQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQA 135
Query: 122 VTKHNLKVIISTNDKDMAQLVSNKIALINNNK-IHDRT-----TIISRFGVSPEKIVDYF 175
+ +V++ T D+D QLVS+ + ++ K + + T ++ ++G++P + D+
Sbjct: 136 ENE-GYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPDFA 194
Query: 176 SLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXX 235
+L GD SDNLPG+ +G KTA K + +Y SL LR L +
Sbjct: 195 ALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVRNR 254
Query: 236 XXXXXXXDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYKLNKL 279
D L + P++L LQP D + +LF+ + L
Sbjct: 255 ELTDLVRDVPLAQT----PDTLRLQPWDRDHIHRLFDDLEFRVL 294
>TIGR_CMR|BA_4831 [details] [associations]
symbol:BA_4831 "DNA polymerase I" species:198094 "Bacillus
anthracis str. Ames" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_847034.1 RefSeq:YP_021476.2 HSSP:P52026
ProteinModelPortal:Q81L03 SMR:Q81L03 IntAct:Q81L03
EnsemblBacteria:EBBACT00000010925 EnsemblBacteria:EBBACT00000018409
GeneID:1083984 GeneID:2815024 KEGG:ban:BA_4831 KEGG:bar:GBAA_4831
PATRIC:18787240 BioCyc:BANT261594:GJ7F-4693-MONOMER Uniprot:Q81L03
Length = 877
Score = 365 (133.5 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 79/213 (37%), Positives = 124/213 (58%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
M+ ++LVDG++ YRAF+ALP + N A+YG ML ++ + + T++ FDA
Sbjct: 1 MEKKVVLVDGNNIAYRAFFALPLLNNDKGIHTNAIYGFTMMLMRILEEEKPTHMLVAFDA 60
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
FR+ Y YK R+K P L Q I +M+ A P ++ EADD++GTLAK+
Sbjct: 61 GKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGTLAKE 120
Query: 121 AVTKHNLKVIISTNDKDMAQLVS-NKIALINNNKI-----HDRTTIISRFGVSPEKIVDY 174
A ++ V + + DKD+ QLVS N + I I + + + ++ +SP++I+D
Sbjct: 121 A-SEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQIIDM 179
Query: 175 FSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
L+GD SDN+PGV +G KTA+KLL Q+ ++E
Sbjct: 180 KGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVE 212
>TIGR_CMR|DET_1391 [details] [associations]
symbol:DET_1391 "DNA-directed DNA polymerase I"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR002562
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_182100.1 ProteinModelPortal:Q3Z6P9
STRING:Q3Z6P9 GeneID:3229334 KEGG:det:DET1391 PATRIC:21609809
ProtClustDB:CLSK836946 BioCyc:DETH243164:GJNF-1392-MONOMER
Uniprot:Q3Z6P9
Length = 903
Score = 363 (132.8 bits), Expect = 3.1e-32, P = 3.1e-32
Identities = 80/213 (37%), Positives = 124/213 (58%)
Query: 5 LLLVDGSSCIYRAFYALPD--IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
++L DG++ ++RA++ LP IR VGA +G +L K+ + + A FD KG
Sbjct: 6 IVLFDGTNLVHRAYHVLPPLAIRKTGEV-VGAAFGFASILIKVLTDLKPDCYAISFDRKG 64
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
FR+ ++ +YKA R MP L+ Q+ + Q+V A P+ G EADDV+GTLA +A
Sbjct: 65 PTFRHEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLATRAA 124
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--------NNKIHDRTTIISRFGVSPEKIVDY 174
++VII++ D D QLV I ++ + ++D + +++G+ PE I DY
Sbjct: 125 AA-GMEVIIASGDADSMQLVGPDIRILYPGPAGSFASTSLYDEVAVRAKYGLGPEHIADY 183
Query: 175 FSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
+L+GD SDN+PGV IGPKTA KL+ +Y +E
Sbjct: 184 KALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIE 216
>TIGR_CMR|CJE_0383 [details] [associations]
symbol:CJE_0383 "DNA polymerase type I" species:195099
"Campylobacter jejuni RM1221" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 RefSeq:YP_178402.1 ProteinModelPortal:Q5HWD3
STRING:Q5HWD3 GeneID:3231145 KEGG:cjr:CJE0383 PATRIC:20042470
BioCyc:CJEJ195099:GJC0-388-MONOMER Uniprot:Q5HWD3
Length = 879
Score = 323 (118.8 bits), Expect = 5.8e-28, P = 5.8e-28
Identities = 72/208 (34%), Positives = 118/208 (56%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 63
TL ++D +R +YAL D +N G + G + L +++ YI D+KGK
Sbjct: 3 TLTIIDTFGFFFRLYYALKDFKNSQGQASGMISGFANFIYSLKNEHKSDYIVFALDSKGK 62
Query: 64 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 123
FR+ + P+YK R P L+ QI + +M++ +G+ + +G EADD+I + K
Sbjct: 63 TFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASFVKTCED 122
Query: 124 KHNLKVIISTNDKDMAQLVSN-KIAL---INNNKIHDRTTIISRFGVSPEKIVDYFSLIG 179
+ ++ V I T DKD+ QL+ + K ++ I+ N +D + ++GV P +I D+ +L G
Sbjct: 123 R-DIFVRIITQDKDLYQLIKDGKTSIYSPISKND-YDEAACLEKYGVKPNQIRDFLALCG 180
Query: 180 DMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
D SDN+PGVK IG K A LL+++ S+E
Sbjct: 181 DSSDNIPGVKGIGAKGAKTLLDEFGSIE 208
>TIGR_CMR|BA_1606 [details] [associations]
symbol:BA_1606 "5'-3' exonuclease family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0006308 "DNA
catabolic process" evidence=ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=ISS] InterPro:IPR002421 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 SMART:SM00475 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0008152 GO:GO:0008409
SUPFAM:SSF47807 HOGENOM:HOG000040581 OMA:WRVDLIP HSSP:P19821
RefSeq:NP_844054.1 RefSeq:YP_018229.1 RefSeq:YP_027758.1
ProteinModelPortal:Q81SP1 DNASU:1086492
EnsemblBacteria:EBBACT00000013235 EnsemblBacteria:EBBACT00000016802
EnsemblBacteria:EBBACT00000019831 GeneID:1086492 GeneID:2819739
GeneID:2852182 KEGG:ban:BA_1606 KEGG:bar:GBAA_1606 KEGG:bat:BAS1489
ProtClustDB:CLSK2485152 BioCyc:BANT260799:GJAJ-1563-MONOMER
BioCyc:BANT261594:GJ7F-1628-MONOMER Uniprot:Q81SP1
Length = 288
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 75/212 (35%), Positives = 113/212 (53%)
Query: 5 LLLVDGSSCIYRAFYALPD----IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDA 60
+LLVDG + ++RAFYA ++ D P ++G +K L + T+I +D
Sbjct: 4 VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIEPTHIVTCWDM 63
Query: 61 KGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQ 120
FR + +YKA R P LI Q +L+ +M + P++ +KG EADD IGTLAKQ
Sbjct: 64 GSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGTLAKQ 123
Query: 121 AVTKHNLKVIISTNDKDMAQLVSNKIALI------NNNKIHDRTTIISRFGVSPEKIVDY 174
+ +V I T D D+ QLV + ++ N + + I+ GV P +IV
Sbjct: 124 YCNE--AEVYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPWQIVHA 181
Query: 175 FSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSL 206
+ +GD SDN PGVK IG KTA KL+ ++ ++
Sbjct: 182 KAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTV 213
>TAIR|locus:2083775 [details] [associations]
symbol:AT3G52050 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739 SMART:SM00279
SMART:SM00475 EMBL:CP002686 GO:GO:0003677 GO:GO:0008152
EMBL:AL049711 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
IPI:IPI00846770 RefSeq:NP_001078270.1 UniGene:At.50269
ProteinModelPortal:A8MQG8 SMR:A8MQG8 STRING:A8MQG8 PaxDb:A8MQG8
PRIDE:A8MQG8 EnsemblPlants:AT3G52050.3 GeneID:824368
KEGG:ath:AT3G52050 TAIR:At3g52050 HOGENOM:HOG000015113 OMA:HDGVPYG
PhylomeDB:A8MQG8 ProtClustDB:CLSN2680900 Genevestigator:A8MQG8
Uniprot:A8MQG8
Length = 448
Score = 248 (92.4 bits), Expect = 4.3e-25, Sum P(2) = 4.3e-25
Identities = 56/155 (36%), Positives = 92/155 (59%)
Query: 60 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 119
AKG NFR+ LYP+YK+ R P ++ + + +KA+ ++ + GVEADDVIGTLA
Sbjct: 199 AKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAM 258
Query: 120 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN----NNKIHD--RTTIISRFG-VSPEKIV 172
++++ KV + + DKD Q++S + L+ +++ +FG + P + V
Sbjct: 259 RSISA-GFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNLEPAQFV 317
Query: 173 DYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
D +L GD SDN+PGV IG AV+L++++ +LE
Sbjct: 318 DIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLE 352
Score = 62 (26.9 bits), Expect = 4.3e-25, Sum P(2) = 4.3e-25
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 5 LLLVDGSSCIYRAFYAL------PDIRNIDNFP--VGALYGTIKMLRKLYKNYRATYIAC 56
++L+DG+S IYRA+Y L + + D V ++ ++ +L + K + +++A
Sbjct: 119 VMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLK-FLPSHVAV 177
Query: 57 IFDAKG 62
+FD G
Sbjct: 178 VFDHDG 183
>GENEDB_PFALCIPARUM|PFB0180w [details] [associations]
symbol:PFB0180w "5'-3' exonuclease, N-terminal
resolvase-like domain, putative" species:5833 "Plasmodium
falciparum" [GO:0020011 "apicoplast" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002421
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 SMART:SM00475 GO:GO:0003677
GO:GO:0008152 EMBL:AE001362 GO:GO:0008409 SUPFAM:SSF47807
GO:GO:0020011 PIR:C71621 RefSeq:XP_001349551.1
ProteinModelPortal:O96139 EnsemblProtists:PFB0180w:mRNA
GeneID:812633 KEGG:pfa:PFB0180w EuPathDB:PlasmoDB:PF3D7_0203900
Uniprot:O96139
Length = 577
Score = 195 (73.7 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 39/115 (33%), Positives = 66/115 (57%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK-G 62
T L+VDGSS +++ F+ +P ++N ++ + +YG I+ L K+Y + TYIA IFD+K
Sbjct: 109 TFLIVDGSSILFKNFFGMPFLKNDNDVNLSTIYGFIQSLNKIYNLFLPTYIAIIFDSKTS 168
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
N + +Y +YK R+K P L Q+ ++ IG + +E+DD I +
Sbjct: 169 NNDKKKIYANYKIFRRKNPDELYEQLKIVSNFCDTIGIKTISSTNIESDDYIARI 223
Score = 106 (42.4 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 124 KHNLKVIISTNDKDMAQLV--SNK-----IALINNNKIH---DRTTIISRFGVSPEKIVD 173
K +VI+ ++DKD+ QL+ +N+ I++ NK + + + P + D
Sbjct: 404 KKKFRVIVVSSDKDLLQLLEYNNETYNMDISICQPNKKYRLVNSHLFYEEHEILPSQYSD 463
Query: 174 YFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
Y L GD +D + GV IG KT+ LL +Y+++E
Sbjct: 464 YLILTGDKTDGISGVPYIGDKTSKCLLKEYHNIE 497
>UNIPROTKB|O96139 [details] [associations]
symbol:PFB0180w "5'-3' exonuclease, N-terminal
resolvase-like domain, putative" species:36329 "Plasmodium
falciparum 3D7" [GO:0008150 "biological_process" evidence=ND]
[GO:0020011 "apicoplast" evidence=ISS] InterPro:IPR002421
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 SMART:SM00475 GO:GO:0003677
GO:GO:0008152 EMBL:AE001362 GO:GO:0008409 SUPFAM:SSF47807
GO:GO:0020011 PIR:C71621 RefSeq:XP_001349551.1
ProteinModelPortal:O96139 EnsemblProtists:PFB0180w:mRNA
GeneID:812633 KEGG:pfa:PFB0180w EuPathDB:PlasmoDB:PF3D7_0203900
Uniprot:O96139
Length = 577
Score = 195 (73.7 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 39/115 (33%), Positives = 66/115 (57%)
Query: 4 TLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK-G 62
T L+VDGSS +++ F+ +P ++N ++ + +YG I+ L K+Y + TYIA IFD+K
Sbjct: 109 TFLIVDGSSILFKNFFGMPFLKNDNDVNLSTIYGFIQSLNKIYNLFLPTYIAIIFDSKTS 168
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 117
N + +Y +YK R+K P L Q+ ++ IG + +E+DD I +
Sbjct: 169 NNDKKKIYANYKIFRRKNPDELYEQLKIVSNFCDTIGIKTISSTNIESDDYIARI 223
Score = 106 (42.4 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 124 KHNLKVIISTNDKDMAQLV--SNK-----IALINNNKIH---DRTTIISRFGVSPEKIVD 173
K +VI+ ++DKD+ QL+ +N+ I++ NK + + + P + D
Sbjct: 404 KKKFRVIVVSSDKDLLQLLEYNNETYNMDISICQPNKKYRLVNSHLFYEEHEILPSQYSD 463
Query: 174 YFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
Y L GD +D + GV IG KT+ LL +Y+++E
Sbjct: 464 YLILTGDKTDGISGVPYIGDKTSKCLLKEYHNIE 497
>UNIPROTKB|Q9KTK4 [details] [associations]
symbol:xni "Protein Xni" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS]
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006308 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 KO:K01146 ProtClustDB:PRK09482
HAMAP:MF_01192 InterPro:IPR022895 PIR:A82268 RefSeq:NP_230545.1
ProteinModelPortal:Q9KTK4 DNASU:2614127 GeneID:2614127
KEGG:vch:VC0898 PATRIC:20080894 OMA:THAIAVF Uniprot:Q9KTK4
Length = 259
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 69/207 (33%), Positives = 109/207 (52%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD--AKG 62
L+++D + I R A PD +I T + L+++ + +++ +FD
Sbjct: 5 LVIIDALNLIRRVHSAQPDPNDITR----TAETTTRTLQRIINEAQPSHMIAVFDHHLSD 60
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
+ +R L P+YKA RK MP L I+ I +G L+ +G EADD++ TLA + V
Sbjct: 61 RGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVATLACK-V 119
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
H KV I + DK QL+S + + + + D I FGV+P ++ DY+ L G
Sbjct: 120 AAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYWGLTGV 179
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLE 207
S +PGV IGPK A ++LNQ++S+E
Sbjct: 180 SSSQIPGVAGIGPKAAKEILNQFSSIE 206
>TIGR_CMR|VC_0898 [details] [associations]
symbol:VC_0898 "exodeoxyribonuclease IX" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006308 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 KO:K01146 ProtClustDB:PRK09482
HAMAP:MF_01192 InterPro:IPR022895 PIR:A82268 RefSeq:NP_230545.1
ProteinModelPortal:Q9KTK4 DNASU:2614127 GeneID:2614127
KEGG:vch:VC0898 PATRIC:20080894 OMA:THAIAVF Uniprot:Q9KTK4
Length = 259
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 69/207 (33%), Positives = 109/207 (52%)
Query: 5 LLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD--AKG 62
L+++D + I R A PD +I T + L+++ + +++ +FD
Sbjct: 5 LVIIDALNLIRRVHSAQPDPNDITR----TAETTTRTLQRIINEAQPSHMIAVFDHHLSD 60
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
+ +R L P+YKA RK MP L I+ I +G L+ +G EADD++ TLA + V
Sbjct: 61 RGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVATLACK-V 119
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
H KV I + DK QL+S + + + + D I FGV+P ++ DY+ L G
Sbjct: 120 AAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYWGLTGV 179
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSLE 207
S +PGV IGPK A ++LNQ++S+E
Sbjct: 180 SSSQIPGVAGIGPKAAKEILNQFSSIE 206
>TIGR_CMR|SO_1549 [details] [associations]
symbol:SO_1549 "exodeoxyribonuclease IX" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS] [GO:0016895
"exodeoxyribonuclease activity, producing 5'-phosphomonoesters"
evidence=ISS] InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00278 SMART:SM00279 GO:GO:0003677 GO:GO:0006281
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000040580 KO:K01146
ProtClustDB:PRK09482 HAMAP:MF_01192 InterPro:IPR022895
RefSeq:NP_717163.2 HSSP:P19821 ProteinModelPortal:Q8EGP9
GeneID:1169355 KEGG:son:SO_1549 PATRIC:23522738 OMA:YELFRAH
Uniprot:Q8EGP9
Length = 261
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 60/206 (29%), Positives = 105/206 (50%)
Query: 3 NTLLLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKG 62
N L++DG + + R + A+PD ++++ K+LR + T++A ++D
Sbjct: 2 NKFLIIDGLNLVRRIYAAIPDENDMESLTERVSVACTKLLRI----HHPTHVAVVWDGDE 57
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
++R LYP YK RK MP L + + + ++ + I EADDVI TLA +
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAAGLIALQEHLQNLQIQS-IYAAAEADDVIATLATKTA 116
Query: 123 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 180
+I+ST DK +QL +I+ + N + + + + GV + +D +L GD
Sbjct: 117 KAQGEALIVST-DKGFSQLNHPRISQWDHFNQQYLNIAELEQKLGVDRSQFLDLMALAGD 175
Query: 181 MSDNLPGVKKIGPKTAVKLLNQYNSL 206
+ +PG+ IGPK+A +LL + +L
Sbjct: 176 SGNKIPGIPGIGPKSAAELLRTFRTL 201
>UNIPROTKB|Q47YA8 [details] [associations]
symbol:xni "Protein Xni" species:167879 "Colwellia
psychrerythraea 34H" [GO:0016895 "exodeoxyribonuclease activity,
producing 5'-phosphomonoesters" evidence=ISS] InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 RefSeq:YP_270212.1
ProteinModelPortal:Q47YA8 STRING:Q47YA8 GeneID:3522688
KEGG:cps:CPS_3538 PATRIC:21470009 HOGENOM:HOG000040580 KO:K01146
OMA:AVQGTPC ProtClustDB:PRK09482
BioCyc:CPSY167879:GI48-3566-MONOMER GO:GO:0016895 HAMAP:MF_01192
InterPro:IPR022895 Uniprot:Q47YA8
Length = 290
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 60/172 (34%), Positives = 92/172 (53%)
Query: 39 IKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAI 98
+ L K+ ++ T+ +FD++ +R L+ YK RKKMP +L ++ I
Sbjct: 53 VNALIKIIDQHQPTHALTVFDSQEPCWRYQLFEGYKKGRKKMPDHLANKLIDIQDAFMEQ 112
Query: 99 GWPILIIKGVEADDVIGTLA-KQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIH 155
G L EADD+I TLA K A+ H KV I + DK L+S I + + N +
Sbjct: 113 GVDSLTSDEDEADDLIATLAVKMAL--HGQKVTIISTDKGFLPLLSPNIHIYDYFNRRYL 170
Query: 156 DRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
D + S+F V +++D+++L GD ++ + GV IG TA KLLNQY SL+
Sbjct: 171 DEEHVQSKFSVKTSQLIDFWTLTGDNTNKIEGVSGIGQVTAAKLLNQYGSLK 222
>TIGR_CMR|CPS_3538 [details] [associations]
symbol:CPS_3538 "exodeoxyribonuclease IX" species:167879
"Colwellia psychrerythraea 34H" [GO:0006308 "DNA catabolic process"
evidence=ISS] [GO:0016895 "exodeoxyribonuclease activity, producing
5'-phosphomonoesters" evidence=ISS] InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 RefSeq:YP_270212.1
ProteinModelPortal:Q47YA8 STRING:Q47YA8 GeneID:3522688
KEGG:cps:CPS_3538 PATRIC:21470009 HOGENOM:HOG000040580 KO:K01146
OMA:AVQGTPC ProtClustDB:PRK09482
BioCyc:CPSY167879:GI48-3566-MONOMER GO:GO:0016895 HAMAP:MF_01192
InterPro:IPR022895 Uniprot:Q47YA8
Length = 290
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 60/172 (34%), Positives = 92/172 (53%)
Query: 39 IKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAI 98
+ L K+ ++ T+ +FD++ +R L+ YK RKKMP +L ++ I
Sbjct: 53 VNALIKIIDQHQPTHALTVFDSQEPCWRYQLFEGYKKGRKKMPDHLANKLIDIQDAFMEQ 112
Query: 99 GWPILIIKGVEADDVIGTLA-KQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIH 155
G L EADD+I TLA K A+ H KV I + DK L+S I + + N +
Sbjct: 113 GVDSLTSDEDEADDLIATLAVKMAL--HGQKVTIISTDKGFLPLLSPNIHIYDYFNRRYL 170
Query: 156 DRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
D + S+F V +++D+++L GD ++ + GV IG TA KLLNQY SL+
Sbjct: 171 DEEHVQSKFSVKTSQLIDFWTLTGDNTNKIEGVSGIGQVTAAKLLNQYGSLK 222
>UNIPROTKB|P38506 [details] [associations]
symbol:ygdG "YgdG" species:83333 "Escherichia coli K-12"
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR002421
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 SMART:SM00475 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003677 EMBL:U29581 GO:GO:0008152 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 EMBL:M27177 EMBL:L07763
HOGENOM:HOG000040580 KO:K01146 ProtClustDB:PRK09482 HAMAP:MF_01192
InterPro:IPR022895 PIR:B65062 RefSeq:NP_417278.4 RefSeq:YP_491006.1
ProteinModelPortal:P38506 SMR:P38506 DIP:DIP-11145N IntAct:P38506
EnsemblBacteria:EBESCT00000004871 EnsemblBacteria:EBESCT00000018316
GeneID:12930228 GeneID:947256 KEGG:ecj:Y75_p2735 KEGG:eco:b2798
PATRIC:32121012 EchoBASE:EB2275 EcoGene:EG12372
BioCyc:EcoCyc:EG12372-MONOMER BioCyc:ECOL316407:JW5446-MONOMER
Genevestigator:P38506 Uniprot:P38506
Length = 251
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 56/170 (32%), Positives = 88/170 (51%)
Query: 42 LRKLYKNYRATYIACIFDAKGKN--FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIG 99
L +L + + T+ +FD + ++ +R+ P YKA R MP L ++ + + G
Sbjct: 33 LDQLIMHSQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRG 92
Query: 100 WPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDR 157
P G EADD+ TLA + + I+ST DK QL+S + + + + D
Sbjct: 93 VPCWSTSGNEADDLAATLAVKVTQAGHQATIVST-DKGYCQLLSPTLRIRDYFQKRWLDA 151
Query: 158 TTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
I FGV P+++ DY+ L G S +PGV IGPK+A +LL ++ SLE
Sbjct: 152 PFIDKEFGVQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLE 201
>TAIR|locus:2036293 [details] [associations]
symbol:AT1G34380 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677 GO:GO:0008152
GO:GO:0008409 SUPFAM:SSF47807 UniGene:At.39746 UniGene:At.64018
EMBL:BT015335 EMBL:BT015711 IPI:IPI00519657 RefSeq:NP_001117409.1
ProteinModelPortal:Q66GR7 STRING:Q66GR7 EnsemblPlants:AT1G34380.2
GeneID:840340 KEGG:ath:AT1G34380 TAIR:At1g34380
HOGENOM:HOG000006229 InParanoid:Q66GR7 OMA:CIMGDEV PhylomeDB:Q66GR7
ProtClustDB:CLSN2925451 Genevestigator:Q66GR7 Uniprot:Q66GR7
Length = 347
Score = 182 (69.1 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 48/166 (28%), Positives = 87/166 (52%)
Query: 54 IACIFDAKGKNFRNILYPSYKATRKKMPYNLILQI--NLIHQMVKAIGWPILIIKGVEAD 111
IA I +G R L PSYKA RK + + + ++++ P++ I+G EAD
Sbjct: 113 IAVIDGEEGNQRRRELLPSYKAHRKSPNHGRYSKRPHQFVDEVLRKCNVPVVRIEGHEAD 172
Query: 112 DVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALI------NNNKIHDRTTIISRFG 165
DV+ TL +QAV + + +I++ DKD QL+S + ++ + +++
Sbjct: 173 DVVATLMEQAVQR-GYRAVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYN 231
Query: 166 VSPEKIVDYFSLIGDMSDNLPGVKKIGP----KTAVKLLNQYNSLE 207
P+ + + ++GD D +PG++ + P KTA+KL+ ++ SLE
Sbjct: 232 CDPQSDLSFRCIMGDEVDGVPGIQHMVPAFGRKTAMKLVRKHGSLE 277
>UNIPROTKB|Q10699 [details] [associations]
symbol:MT2151 "5'-3' exonuclease" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00278 SMART:SM00279 SMART:SM00475 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003677 GO:GO:0006281 EMBL:BX842578 GO:GO:0090305
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 PIR:E70767
RefSeq:NP_216606.1 RefSeq:NP_336618.1 ProteinModelPortal:Q10699
SMR:Q10699 EnsemblBacteria:EBMYCT00000002777
EnsemblBacteria:EBMYCT00000070703 GeneID:887924 GeneID:924576
KEGG:mtc:MT2151 KEGG:mtu:Rv2090 PATRIC:18126492 TubercuList:Rv2090
HOGENOM:HOG000040581 OMA:WRVDLIP ProtClustDB:CLSK872003
Uniprot:Q10699
Length = 318
Score = 167 (63.8 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 50/158 (31%), Positives = 84/158 (53%)
Query: 1 MQNTLLLVDGSSCIYRAFYALPD-IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 59
M++ L+L+DG+S +R+F+ +P I D PV A+ G I + + R +A D
Sbjct: 1 MRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 60
Query: 60 AKGK-NFRNILYPSYKATR------------KKMPYNLILQINLIHQMVKAIGWPILIIK 106
+ FR L PSYKA R +++P L Q+++I +++ A G +
Sbjct: 61 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 120
Query: 107 GVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSN 144
G EADDV+GTLA + + VI+ + D+D+ Q+V++
Sbjct: 121 GFEADDVLGTLATR---ERRDPVIVVSGDRDLLQVVAD 155
Score = 143 (55.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 43/150 (28%), Positives = 77/150 (51%)
Query: 71 PSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVI 130
P+ + +++P L Q+++I +++ A G + G EADDV+GTLA + + VI
Sbjct: 85 PNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLATR---ERRDPVI 141
Query: 131 ISTNDKDMAQLVSN-----KIALINNN----KIHDRTTIISRFGVSPEKI-VDYFSLI-- 178
+ + D+D+ Q+V++ ++ + + + R+G+ + Y L
Sbjct: 142 VVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALL 201
Query: 179 -GDMSDNLPGVKKIGPKTAVKLLNQYNSLE 207
GD SD LPGV +G KTA LL ++ SL+
Sbjct: 202 RGDPSDGLPGVPGVGEKTAATLLARHGSLD 231
>DICTYBASE|DDB_G0267464 [details] [associations]
symbol:polA "mitochondrial DNA polymerase A"
species:44689 "Dictyostelium discoideum" [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 SMART:SM00279
SMART:SM00475 SMART:SM00482 dictyBase:DDB_G0267464
GenomeReviews:CM000150_GR GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000003 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 HSSP:P19821 EMBL:AY170439 RefSeq:XP_647557.1
ProteinModelPortal:Q8I7W9 STRING:Q8I7W9 EnsemblProtists:DDB0191131
GeneID:8616365 KEGG:ddi:DDB_G0267464 OMA:TATKWIQ Uniprot:Q8I7W9
Length = 1369
Score = 172 (65.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 52/186 (27%), Positives = 91/186 (48%)
Query: 6 LLVDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRA--TYIACIFDAKG- 62
+L+DG+ Y+A P + N + V LYG ++ + K+ + + + C FD KG
Sbjct: 275 VLIDGTLMAYKANATTPSLTN-EGMNVNVLYGFMRSMLKVIDELKPIDSIVVC-FDPKGG 332
Query: 63 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 122
+FR LYP YK+ R P L+ Q+ LI ++ +I + G E DD++ T +K A
Sbjct: 333 SSFRRDLYPEYKSNRPPTPPELLQQLLLIPEVTDSINVAFTKVDGYECDDLLATYSKLAT 392
Query: 123 TKHNLKVIISTNDKDMAQLVSNK-----IALINNNK-----IHDRTTIIS-RFG--VSPE 169
+ N K I + D SN+ + ++ ++K ++D ++ S R G V +
Sbjct: 393 QEGN-KFIEGNDQYDPTHPESNRFNGSQVTIVTDDKDIYQLVNDNVSVYSTRRGSMVDKQ 451
Query: 170 KIVDYF 175
++D F
Sbjct: 452 GVIDKF 457
Score = 167 (63.8 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 34/103 (33%), Positives = 62/103 (60%)
Query: 106 KGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISR 163
K +E +D ++ + +V I T+DKD+ QLV++ +++ + + + D+ +I +
Sbjct: 397 KFIEGNDQYDPTHPESNRFNGSQVTIVTDDKDIYQLVNDNVSVYSTRRGSMVDKQGVIDK 456
Query: 164 FGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSL 206
FG P K V + SLIGD DN+PG+ +IG KTA ++ ++ +L
Sbjct: 457 FGFEPNKFVTFQSLIGDKVDNIPGIPRIGEKTATDIIKKFGNL 499
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.139 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 284 258 0.00087 114 3 11 22 0.42 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 593 (63 KB)
Total size of DFA: 177 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 20.58u 0.08s 20.66t Elapsed: 00:00:30
Total cpu time: 20.58u 0.08s 20.66t Elapsed: 00:00:31
Start: Thu Aug 15 12:30:40 2013 End: Thu Aug 15 12:31:11 2013