BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14493
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F9Y|A Chain A, The Crystal Structure Of The Carboxyltransferase Subunit
Of Acc From Escherichia Coli
Length = 339
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 129/241 (53%), Positives = 172/241 (71%)
Query: 30 NIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGD 89
+I+ +E++ L +K +LT +I++ L WQI+Q+ARHP+RPYTLDY+R F + EL GD
Sbjct: 53 DINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGD 112
Query: 90 RNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK 149
R Y DD +I+G +AR++G M+IGHQKGR E+I RNFGM PEGYRKA+RLM +AE+
Sbjct: 113 RAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAER 172
Query: 150 FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXXXXXX 209
F +PI TFIDTPGA+PG+ AEERGQSEAI ++ MS+L VP++ T
Sbjct: 173 FKMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIG 232
Query: 210 VSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPI 269
V D MLQY+ YSVISPEGCASILWK++ +A AAEA+G+ +LK + LI+ II EP+
Sbjct: 233 VGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIRPRLKELKLIDSIIPEPL 292
Query: 270 A 270
Sbjct: 293 G 293
>pdb|2F9I|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|C Chain C, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 327
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 162/245 (66%)
Query: 26 QFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHE 85
Q +++D +EI+ L + T++IY+ L PW QIAR +RP TLDYI IF E
Sbjct: 35 QDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFME 94
Query: 86 LHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMH 145
LHGDRN+ DD ++IG + +NG + VIG Q+G++ + I RNFGMA PEGYRKA+RLM
Sbjct: 95 LHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMK 154
Query: 146 IAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXX 205
AEKFN PIFTFIDT GA+PG AEERGQSE+I ++ M+ LKVP+I+
Sbjct: 155 QAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGA 214
Query: 206 XXXXVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKII 265
+++ LML+ + YSVISPEG A++LWK S A AAE + +TA +K +G+I+ +I
Sbjct: 215 LGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVI 274
Query: 266 KEPIA 270
EP+
Sbjct: 275 SEPLG 279
>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|B Chain B, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|C Chain C, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|D Chain D, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|E Chain E, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|F Chain F, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
Length = 527
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 98 IIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTF 157
+IG ARI G++ ++ +Q G+ + KA R + + FN+PI TF
Sbjct: 321 VIG-FARIQGKTVGIVANQPSVLA--------GVLDIDSSDKAARFIRFLDAFNIPILTF 371
Query: 158 IDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXXXXXXV----SDI 213
+DTPG PG+ E G +Y S+ VP I+ +D
Sbjct: 372 VDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAXGSKHLGADX 431
Query: 214 TLMLQYAIYSVISPEGCASILWKTSKRASDAAE 246
L A +V PEG A+I++K AS E
Sbjct: 432 VLAWPSAEIAVXGPEGAANIIFKREIEASSNPE 464
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|C Chain C, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|D Chain D, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|E Chain E, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|F Chain F, Propionyl-Coa Carboxylase Beta Subunit, D422a
Length = 530
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXX 198
KA R + + FN+P+ TF+D PG PG+D E G I+ ++ VPLI+
Sbjct: 355 KAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITR 414
Query: 199 XXXXXXXXXXXV----SDITLMLQYAIYSVISPEGCASILW-KTSKRASDAAEA 247
+D+ L A +V+ +G +IL +T A D AEA
Sbjct: 415 KAFGGAYAVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEA 468
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v
pdb|3IAV|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422v
Length = 530
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXX 198
KA R + + FN+P+ TF+D PG PG+D E G I+ ++ VPLI+
Sbjct: 355 KAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITR 414
Query: 199 XXXXXXXXXXXV----SDITLMLQYAIYSVISPEGCASILW-KTSKRASDAAEA 247
+D+ L A +V+ +G +IL +T A D AEA
Sbjct: 415 KAFGGAYVVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEA 468
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|F Chain F, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|A Chain A, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|B Chain B, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|D Chain D, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|E Chain E, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
Length = 530
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXX 198
KA R + + FN+P+ TF+D PG PG+D E G I+ ++ VPLI+
Sbjct: 355 KAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITR 414
Query: 199 XXXXXXXXXXXV----SDITLMLQYAIYSVISPEGCASILW-KTSKRASDAAEA 247
+D+ L A +V+ +G +IL +T A D AEA
Sbjct: 415 KAFGGAYNVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEA 468
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l
pdb|3IB9|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422l
Length = 530
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXX 198
KA R + + FN+P+ TF+D PG PG+D E G I+ ++ VPLI+
Sbjct: 355 KAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITR 414
Query: 199 XXXXXXXXXXXV----SDITLMLQYAIYSVISPEGCASILW-KTSKRASDAAEA 247
+D+ L A +V+ +G +IL +T A D AEA
Sbjct: 415 KAFGGAYLVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEA 468
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNV|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNY|A Chain A, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XNY|B Chain B, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XO6|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
Length = 530
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXX 198
KA R + + FN+P+ TF+D PG PG+D E G I+ ++ VPLI+
Sbjct: 355 KAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITR 414
Query: 199 XXXXXXXXXXXV----SDITLMLQYAIYSVISPEGCASILW-KTSKRASDAAEA 247
+D+ L A +V+ +G +IL +T A D AEA
Sbjct: 415 KAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEA 468
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
Length = 530
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXX 198
KA R + + FN+P+ TF+D PG PG+D E G I+ ++ VPLI+
Sbjct: 355 KAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITR 414
Query: 199 XXXXXXXXXXXV----SDITLMLQYAIYSVISPEGCASILW-KTSKRASDAAEA 247
+D+ L A +V+ +G +IL +T A D AEA
Sbjct: 415 KAFGGAYIVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEA 468
>pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|B Chain B, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|C Chain C, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|D Chain D, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|E Chain E, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|F Chain F, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
Length = 522
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXX 198
KA R + + FN+P+ + +DTPG PG D E +G +Y ++ VP I+
Sbjct: 348 KAARFIRFCDAFNIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVR 407
Query: 199 XXXXXXXXXXXVSDITLMLQYAI----YSVISPEGCASILWKTS-KRASDAAEAL 248
+ + L YA +V PEG IL++ ++AS+ + L
Sbjct: 408 KSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILYRKEIQQASNPDDVL 462
>pdb|1NI5|A Chain A, Structure Of The Mesj Pp-Atpase From Escherichia Coli
Length = 433
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFC-NYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+A+SGG+DS+VLL N + H++HGLS ++D W+ HC+N
Sbjct: 18 VAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCEN 67
>pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON9|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
Length = 523
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Query: 97 SIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFT 156
+++ AR+NG S ++ +Q ++ G KA ++ + FN+P+
Sbjct: 315 NLVTAFARVNGRSVGIVANQP------SVMS--GCLDINASDKAAEFVNFCDSFNIPLVQ 366
Query: 157 FIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTXXXXXXXXXXXXXXVSDITLM 216
+D PG PG+ E G +Y S+ VP I+ D+
Sbjct: 367 LVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGAD 426
Query: 217 LQYAIYS----VISPEGCASILWKTSKRASDAAEAL 248
YA S V+ EG A+++++ +A+D +A+
Sbjct: 427 AVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAM 462
>pdb|3N6R|B Chain B, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|D Chain D, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|F Chain F, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|H Chain H, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|J Chain J, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|L Chain L, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 531
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 54 KLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGDRNYGD-----DLSIIGVLARINGE 108
++ P + + +P PY + + IH+L + ++ + +II R+ G
Sbjct: 285 RIEPSLDTLVPDNPNTPYDMKEL------IHKLADEGDFYEIQEEFAKNIITGFIRLEGR 338
Query: 109 SCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGID 168
+ V+ +Q + G + RKA R + + F +P+ T ID PG PG
Sbjct: 339 TVGVVANQP--------LVLAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFLPGTS 390
Query: 169 AEERGQSEAIGHSIYVMSKLKVPLIS 194
E G + +Y + VP+++
Sbjct: 391 QEYGGVIKHGAKLLYAYGEATVPMVT 416
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|B Chain B, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|C Chain C, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|D Chain D, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|E Chain E, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|F Chain F, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
Length = 548
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 10/132 (7%)
Query: 63 IARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVN 122
I P +PY + + D L Y ++ ++G RI+G ++ +Q
Sbjct: 304 IPDSPNQPYDMHEVITRLLDDEFLEIQAGYAQNI-VVG-FGRIDGRPVGIVANQP----- 356
Query: 123 ERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSI 182
G KA R + + FN+PI +D PG PG D E G +
Sbjct: 357 ---THFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLL 413
Query: 183 YVMSKLKVPLIS 194
Y + VP I+
Sbjct: 414 YAYGEATVPKIT 425
>pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|B Chain B, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|C Chain C, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|D Chain D, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|E Chain E, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|F Chain F, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
Length = 548
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 10/132 (7%)
Query: 63 IARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVN 122
I P +PY + + D L Y ++ ++G RI+G ++ +Q
Sbjct: 304 IPDSPNQPYDMHEVITRLLDDEFLEIQAGYAQNI-VVG-FGRIDGRPVGIVANQP----- 356
Query: 123 ERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSI 182
G KA R + + FN+PI +D PG PG D E G +
Sbjct: 357 ---THFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLL 413
Query: 183 YVMSKLKVPLIS 194
Y + VP I+
Sbjct: 414 YAYGEATVPKIT 425
>pdb|3U9R|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc), Beta Subunit
pdb|3U9S|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|D Chain D, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|F Chain F, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|H Chain H, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|J Chain J, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|L Chain L, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 555
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 89/218 (40%), Gaps = 44/218 (20%)
Query: 23 RSLQFSSNIDTS-KEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIRE--- 78
RS +F++N T +++N L ++ E S ARH R L +RE
Sbjct: 31 RSAEFAANAATMLEQVNALRTLLGRIHEGGGSAAQ-------ARHSARGKLL--VRERIN 81
Query: 79 -------IFTDIHELHGDRNYGDDLSIIGVLA---RINGESCMVIGHQKGRNVNERIIRN 128
F ++ L YG++++ G++A R+ G CM++G N+ ++
Sbjct: 82 RLLDPGSPFLELSALAAHEVYGEEVAAAGIVAGIGRVEGVECMIVG-------NDATVKG 134
Query: 129 FGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGA--------FPGIDAEERGQSEAIGH 180
G P +K +R IA + LP +D+ GA FP D E G+ I
Sbjct: 135 -GTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFP--DREHFGR---IFF 188
Query: 181 SIYVMSKLKVPLISTXXXXXXXXXXXXXXVSDITLMLQ 218
+ MS +P I+ +SD T+M++
Sbjct: 189 NQANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVR 226
>pdb|1WY5|A Chain A, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase
pdb|1WY5|B Chain B, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase
pdb|2E21|A Chain A, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E21|B Chain B, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E21|C Chain C, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E21|D Chain D, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E89|A Chain A, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
pdb|2E89|C Chain C, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
pdb|2E89|D Chain D, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
pdb|2E89|B Chain B, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
Length = 317
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKI-QFYVFHINHGLSPSSDKWLIHCKN 317
IA+SGG+DS VL D+ L + + + + H NH L S+++ CK
Sbjct: 29 IAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKE 78
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 219 YAIYSVISPEGCASILWKTS--KRASDAAEALGLTADKLKSIGLINKIIKEPIAYS 272
YA+ + I +G +S+ TS KR AEALG+ ++ K++ I+ + E + Y
Sbjct: 246 YALANFIQSQGISSLKVFTSRMKRTIQTAEALGVPYEQFKALNEIDAGVCEEMTYE 301
>pdb|1C7Z|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C7Z|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C81|A Chain A, Michaelis Complex Of Fructose-2,6-Bisphosphatase
Length = 191
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 219 YAIYSVISPEGCASI-LWKTS-KRASDAAEALGLTADKLKSIGLINKIIKEPIAYS 272
YA+ + I +G +S+ +W + KR AEALG+ ++ K++ I+ + E + Y
Sbjct: 35 YALANFIRSQGISSLKVWTSHMKRTIQTAEALGVPYEQWKALNEIDAGVCEEMTYE 90
>pdb|3A2K|A Chain A, Crystal Structure Of Tils Complexed With Trna
pdb|3A2K|B Chain B, Crystal Structure Of Tils Complexed With Trna
Length = 464
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINH 302
+ SGG DS LL + +L +K+Q H++H
Sbjct: 23 VGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDH 56
>pdb|2PLY|A Chain A, Structure Of The Mrna Binding Fragment Of Elongation
Factor Selb In Complex With Secis Rna.
pdb|2PLY|B Chain B, Structure Of The Mrna Binding Fragment Of Elongation
Factor Selb In Complex With Secis Rna
Length = 258
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 100 GVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFID 159
GVL +IN E H++ +I+N P G +A + + K+ LP+ ++D
Sbjct: 185 GVLVKINDE---FYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYLD 241
>pdb|2UWM|A Chain A, C-Terminal Domain(Wh2-Wh4) Of Elongation Factor Selb In
Complex With Secis Rna
pdb|2UWM|B Chain B, C-Terminal Domain(Wh2-Wh4) Of Elongation Factor Selb In
Complex With Secis Rna
Length = 258
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 100 GVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFID 159
GVL +IN E H++ +I+N P G +A + + K+ LP+ ++D
Sbjct: 185 GVLVKINDE---FYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYLD 241
>pdb|1LVA|A Chain A, Crystal Structure Of A C-Terminal Fragment Of Moorella
Thermoacetica Elongation Factor Selb
Length = 258
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 100 GVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFID 159
GVL +IN E H++ +I+N P G +A + + K+ LP+ ++D
Sbjct: 185 GVLVKINDE---FYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYLD 241
>pdb|1TIP|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
pdb|1TIP|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
Length = 191
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 219 YAIYSVISPEGCASI-LWKTS-KRASDAAEALGLTADKLKSIGLINKIIKEPIAYS 272
YA+ + I +G +S+ +W + KR AEALG+ ++ K++ I+ + E + Y
Sbjct: 35 YALANFIRSQGISSLKVWTSHMKRTIQTAEALGVPYEQWKALNEIDAGVCEEMTYE 90
>pdb|1WSU|A Chain A, C-Terminal Domain Of Elongation Factor Selb Complexed With
Secis Rna
pdb|1WSU|B Chain B, C-Terminal Domain Of Elongation Factor Selb Complexed With
Secis Rna
pdb|1WSU|C Chain C, C-Terminal Domain Of Elongation Factor Selb Complexed With
Secis Rna
pdb|1WSU|D Chain D, C-Terminal Domain Of Elongation Factor Selb Complexed With
Secis Rna
Length = 124
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 100 GVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFID 159
GVL +IN E H++ +I+N P G +A + + K+ LP+ ++D
Sbjct: 51 GVLVKINDE---FYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYLD 107
>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
Length = 761
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 117 KGR--NVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEER 172
+GR + R I FG+ + G+R V +IA+K+NL + ++ G + ++ EE+
Sbjct: 3 RGRVPQIQARQINIFGIVQGVGFRPFV--FNIAQKYNLKGIVYNNSSGLYIEVEGEEK 58
>pdb|1FBT|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|1FBT|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Length = 190
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 219 YAIYSVISPEGCASI-LWKT-SKRASDAAEALGLTADKLKSIGLINKIIKEPIAYS 272
YA+ + I +G +S+ +W + KR AEALG+ ++ K++ I+ + E Y
Sbjct: 34 YALANFIRSQGISSLKVWTSHXKRTIQTAEALGVPYEQWKALNEIDAGVCEEXTYE 89
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 38 NDLVKKCNKLTEEIY-SKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDD 95
N +V++ L EI+ +K W + + P + Y+ E+ T D+NY DD
Sbjct: 128 NRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDD 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,383,949
Number of Sequences: 62578
Number of extensions: 327837
Number of successful extensions: 819
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 32
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)