Query psy14493
Match_columns 318
No_of_seqs 301 out of 2498
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:11:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05724 acetyl-CoA carboxylas 100.0 2.6E-65 5.7E-70 476.4 31.3 269 1-269 1-269 (319)
2 TIGR00513 accA acetyl-CoA carb 100.0 2.2E-64 4.7E-69 469.6 32.2 269 1-269 1-269 (316)
3 CHL00198 accA acetyl-CoA carbo 100.0 4.6E-64 9.9E-69 467.4 31.4 269 1-269 4-272 (322)
4 COG0825 AccA Acetyl-CoA carbox 100.0 2.5E-65 5.4E-70 461.1 22.1 268 2-269 1-268 (317)
5 PLN03230 acetyl-coenzyme A car 100.0 2.7E-63 5.8E-68 471.5 32.2 268 2-269 72-339 (431)
6 PLN03229 acetyl-coenzyme A car 100.0 5E-61 1.1E-65 479.3 31.4 267 3-269 94-360 (762)
7 PRK12319 acetyl-CoA carboxylas 100.0 4.8E-50 1E-54 366.1 26.6 214 55-268 2-215 (256)
8 COG4799 Acetyl-CoA carboxylase 100.0 8E-42 1.7E-46 334.4 18.0 225 62-306 279-525 (526)
9 TIGR01117 mmdA methylmalonyl-C 100.0 2.2E-39 4.8E-44 322.9 24.7 224 62-306 270-511 (512)
10 PLN02820 3-methylcrotonyl-CoA 100.0 1.1E-38 2.4E-43 319.6 25.0 233 4-266 39-278 (569)
11 PRK05654 acetyl-CoA carboxylas 100.0 4.2E-37 9.1E-42 285.9 21.6 214 52-290 55-282 (292)
12 COG4799 Acetyl-CoA carboxylase 100.0 2E-37 4.4E-42 303.4 19.9 248 7-290 3-254 (526)
13 PLN02820 3-methylcrotonyl-CoA 100.0 5.5E-37 1.2E-41 307.5 22.6 207 62-292 326-558 (569)
14 PF01039 Carboxyl_trans: Carbo 100.0 6.4E-38 1.4E-42 312.5 15.8 221 62-303 249-491 (493)
15 TIGR00515 accD acetyl-CoA carb 100.0 1.7E-36 3.8E-41 280.6 21.9 214 52-290 54-281 (285)
16 TIGR03134 malonate_gamma malon 100.0 1.6E-34 3.5E-39 261.4 21.7 180 73-269 3-191 (238)
17 KOG0540|consensus 100.0 2.5E-35 5.5E-40 278.8 16.0 218 64-306 306-535 (536)
18 TIGR01117 mmdA methylmalonyl-C 100.0 5.9E-34 1.3E-38 284.0 22.3 222 18-267 2-228 (512)
19 TIGR03133 malonate_beta malona 100.0 5.1E-33 1.1E-37 255.5 22.3 220 51-289 2-231 (274)
20 CHL00174 accD acetyl-CoA carbo 100.0 9.2E-33 2E-37 255.0 22.3 213 52-288 66-293 (296)
21 PRK07189 malonate decarboxylas 100.0 9.7E-33 2.1E-37 256.2 20.0 209 47-266 7-225 (301)
22 PF03255 ACCA: Acetyl co-enzym 100.0 2.3E-34 4.9E-39 237.0 6.3 145 4-148 1-145 (145)
23 KOG0540|consensus 100.0 1.5E-32 3.3E-37 260.0 10.9 197 6-231 26-231 (536)
24 PF01039 Carboxyl_trans: Carbo 100.0 8.5E-31 1.8E-35 261.4 18.6 199 39-266 1-204 (493)
25 COG0777 AccD Acetyl-CoA carbox 100.0 3.6E-27 7.8E-32 212.2 18.4 216 53-290 57-283 (294)
26 PF06833 MdcE: Malonate decarb 99.7 5.8E-16 1.3E-20 138.5 13.8 160 96-266 17-186 (234)
27 cd07020 Clp_protease_NfeD_1 No 99.1 6.9E-10 1.5E-14 97.6 12.6 128 129-266 7-164 (187)
28 PRK07854 enoyl-CoA hydratase; 99.1 2.3E-09 4.9E-14 98.1 15.2 139 128-266 20-173 (243)
29 PF00378 ECH: Enoyl-CoA hydrat 99.1 1.8E-09 3.8E-14 98.7 14.4 153 105-266 4-177 (245)
30 PRK08150 enoyl-CoA hydratase; 99.1 9.8E-09 2.1E-13 94.6 17.0 138 128-266 22-179 (255)
31 TIGR02280 PaaB1 phenylacetate 99.0 1.2E-08 2.6E-13 94.0 17.0 138 129-266 20-180 (256)
32 PRK06142 enoyl-CoA hydratase; 99.0 1.1E-08 2.5E-13 94.9 16.9 139 128-266 26-196 (272)
33 PRK08140 enoyl-CoA hydratase; 99.0 1.1E-08 2.3E-13 94.6 16.5 139 128-266 24-186 (262)
34 KOG0016|consensus 99.0 4.2E-09 9E-14 95.2 13.0 154 104-266 13-194 (266)
35 PRK07260 enoyl-CoA hydratase; 99.0 1.9E-08 4.1E-13 92.6 17.2 138 129-266 23-185 (255)
36 PRK09076 enoyl-CoA hydratase; 99.0 1.6E-08 3.6E-13 93.2 16.8 137 130-266 24-182 (258)
37 PLN02664 enoyl-CoA hydratase/d 99.0 1.5E-08 3.2E-13 94.4 16.5 139 128-266 28-198 (275)
38 PRK11423 methylmalonyl-CoA dec 99.0 1.1E-08 2.3E-13 94.6 15.4 152 106-266 11-183 (261)
39 PRK07511 enoyl-CoA hydratase; 99.0 1.9E-08 4.2E-13 92.8 17.1 139 128-266 23-185 (260)
40 PRK06023 enoyl-CoA hydratase; 99.0 2.1E-08 4.5E-13 92.2 17.1 139 128-266 26-184 (251)
41 PRK05862 enoyl-CoA hydratase; 99.0 1.9E-08 4.1E-13 92.7 16.8 139 128-266 24-181 (257)
42 PRK06143 enoyl-CoA hydratase; 99.0 1.9E-08 4.1E-13 92.7 16.7 139 128-266 27-186 (256)
43 PRK07327 enoyl-CoA hydratase; 99.0 1.9E-08 4E-13 93.4 16.7 138 129-266 33-193 (268)
44 PRK05869 enoyl-CoA hydratase; 99.0 2.4E-08 5.1E-13 90.2 16.6 137 130-266 29-186 (222)
45 PRK05981 enoyl-CoA hydratase; 99.0 2.6E-08 5.7E-13 92.2 17.1 139 128-266 24-190 (266)
46 PRK07659 enoyl-CoA hydratase; 99.0 1.6E-08 3.5E-13 93.3 15.6 139 128-266 26-185 (260)
47 PRK06563 enoyl-CoA hydratase; 99.0 2.3E-08 5.1E-13 92.0 16.2 139 128-266 19-179 (255)
48 PRK09120 p-hydroxycinnamoyl Co 99.0 2.1E-08 4.5E-13 93.4 15.9 139 128-266 28-191 (275)
49 PRK05809 3-hydroxybutyryl-CoA 99.0 2.9E-08 6.4E-13 91.6 16.7 139 128-266 24-184 (260)
50 PRK06190 enoyl-CoA hydratase; 99.0 3.7E-08 8E-13 91.0 17.3 139 128-266 24-181 (258)
51 PRK05980 enoyl-CoA hydratase; 99.0 2.9E-08 6.4E-13 91.6 16.3 139 128-266 23-187 (260)
52 PRK09674 enoyl-CoA hydratase-i 99.0 3.6E-08 7.7E-13 90.8 16.7 139 128-266 22-179 (255)
53 PRK08258 enoyl-CoA hydratase; 99.0 4.4E-08 9.6E-13 91.3 17.3 139 128-266 37-201 (277)
54 PRK06688 enoyl-CoA hydratase; 99.0 3.5E-08 7.7E-13 90.9 16.5 139 128-266 25-183 (259)
55 PRK06127 enoyl-CoA hydratase; 98.9 5E-08 1.1E-12 90.5 17.3 139 128-266 31-193 (269)
56 cd06558 crotonase-like Crotona 98.9 4.8E-08 1E-12 85.6 16.3 138 129-266 20-180 (195)
57 PRK07657 enoyl-CoA hydratase; 98.9 4.2E-08 9.1E-13 90.6 16.5 139 128-266 24-184 (260)
58 PRK05995 enoyl-CoA hydratase; 98.9 4.2E-08 9.1E-13 90.6 16.5 137 129-266 25-185 (262)
59 TIGR03210 badI 2-ketocyclohexa 98.9 5.1E-08 1.1E-12 89.9 16.9 139 128-266 22-181 (256)
60 PRK08252 enoyl-CoA hydratase; 98.9 6.4E-08 1.4E-12 89.1 17.3 138 128-266 23-178 (254)
61 PLN02600 enoyl-CoA hydratase 98.9 6.2E-08 1.3E-12 89.0 17.0 138 129-266 16-175 (251)
62 PRK03580 carnitinyl-CoA dehydr 98.9 5.3E-08 1.2E-12 89.9 16.6 137 130-266 24-181 (261)
63 PRK06494 enoyl-CoA hydratase; 98.9 6.6E-08 1.4E-12 89.2 17.0 138 129-266 25-181 (259)
64 PRK07112 polyketide biosynthes 98.9 7.8E-08 1.7E-12 88.6 17.4 137 128-266 24-182 (255)
65 PRK07110 polyketide biosynthes 98.9 5E-08 1.1E-12 89.6 16.0 138 128-266 25-181 (249)
66 PRK05870 enoyl-CoA hydratase; 98.9 1.8E-08 3.9E-13 92.5 12.8 139 128-266 23-182 (249)
67 PRK08138 enoyl-CoA hydratase; 98.9 5.3E-08 1.2E-12 90.0 16.0 139 128-266 28-185 (261)
68 PRK06213 enoyl-CoA hydratase; 98.9 1E-07 2.3E-12 86.3 17.3 135 130-266 24-179 (229)
69 PRK07509 enoyl-CoA hydratase; 98.9 6.9E-08 1.5E-12 89.2 16.4 139 128-266 23-189 (262)
70 PRK08260 enoyl-CoA hydratase; 98.9 7.1E-08 1.5E-12 90.8 16.3 139 128-266 24-200 (296)
71 PRK05674 gamma-carboxygeranoyl 98.9 8E-08 1.7E-12 89.0 16.5 137 129-266 27-187 (265)
72 TIGR01929 menB naphthoate synt 98.9 5.9E-08 1.3E-12 89.6 15.5 139 128-266 23-184 (259)
73 PRK06144 enoyl-CoA hydratase; 98.9 9.8E-08 2.1E-12 88.3 16.9 139 128-266 28-190 (262)
74 cd07021 Clp_protease_NfeD_like 98.9 3.6E-08 7.7E-13 86.2 13.2 90 129-228 7-97 (178)
75 PRK07658 enoyl-CoA hydratase; 98.9 6.8E-08 1.5E-12 88.9 15.6 137 130-266 23-181 (257)
76 PRK07468 enoyl-CoA hydratase; 98.9 8.5E-08 1.8E-12 88.6 16.2 138 128-266 25-186 (262)
77 PRK06210 enoyl-CoA hydratase; 98.9 5E-08 1.1E-12 90.6 14.6 139 128-266 26-195 (272)
78 COG1024 CaiD Enoyl-CoA hydrata 98.9 8.5E-08 1.8E-12 88.3 15.9 152 130-290 27-200 (257)
79 PRK05864 enoyl-CoA hydratase; 98.9 9.1E-08 2E-12 89.1 16.1 139 128-266 30-197 (276)
80 PRK09245 enoyl-CoA hydratase; 98.9 9.1E-08 2E-12 88.6 15.9 139 128-266 23-190 (266)
81 PRK08139 enoyl-CoA hydratase; 98.9 1.2E-07 2.6E-12 87.9 16.6 138 128-266 31-190 (266)
82 PRK07799 enoyl-CoA hydratase; 98.9 1.2E-07 2.6E-12 87.7 16.5 139 128-266 25-187 (263)
83 PRK07396 dihydroxynaphthoic ac 98.9 1.1E-07 2.5E-12 88.4 16.3 153 105-266 19-194 (273)
84 TIGR03189 dienoyl_CoA_hyt cycl 98.9 7.5E-08 1.6E-12 88.5 14.8 136 130-266 22-175 (251)
85 KOG0368|consensus 98.8 1.1E-09 2.4E-14 116.4 2.4 181 53-238 1784-1999(2196)
86 PLN02888 enoyl-CoA hydratase 98.8 1.4E-07 3.1E-12 87.4 16.1 138 129-266 31-186 (265)
87 cd07016 S14_ClpP_1 Caseinolyti 98.8 2.3E-08 4.9E-13 85.6 9.8 90 129-229 6-98 (160)
88 PRK08788 enoyl-CoA hydratase; 98.8 2.7E-07 5.8E-12 86.5 17.3 138 129-266 37-208 (287)
89 PRK06495 enoyl-CoA hydratase; 98.8 2.7E-07 5.8E-12 85.1 17.1 136 130-266 25-181 (257)
90 PRK08259 enoyl-CoA hydratase; 98.8 1.5E-07 3.2E-12 86.8 15.3 139 128-266 23-180 (254)
91 PRK08321 naphthoate synthase; 98.8 2.5E-07 5.3E-12 87.4 16.6 139 128-266 45-223 (302)
92 PRK07827 enoyl-CoA hydratase; 98.8 2E-07 4.4E-12 86.0 15.3 138 128-266 26-187 (260)
93 TIGR03200 dearomat_oah 6-oxocy 98.8 2.1E-07 4.6E-12 89.1 15.8 138 129-266 49-211 (360)
94 PRK06072 enoyl-CoA hydratase; 98.8 2.2E-07 4.8E-12 85.2 15.2 136 128-264 20-173 (248)
95 PRK05617 3-hydroxyisobutyryl-C 98.8 1.2E-07 2.7E-12 90.9 13.9 152 105-266 9-186 (342)
96 PLN02267 enoyl-CoA hydratase/i 98.8 7.1E-07 1.5E-11 81.5 18.1 135 131-266 22-183 (239)
97 PLN03214 probable enoyl-CoA hy 98.8 5.4E-07 1.2E-11 84.1 17.6 137 130-266 33-195 (278)
98 PRK08272 enoyl-CoA hydratase; 98.8 3.4E-07 7.4E-12 86.4 16.4 137 128-266 30-211 (302)
99 PLN02921 naphthoate synthase 98.8 3E-07 6.6E-12 87.7 15.9 139 128-266 87-248 (327)
100 cd07015 Clp_protease_NfeD Nodu 98.7 1.6E-07 3.6E-12 81.4 12.7 124 130-266 8-164 (172)
101 PRK08290 enoyl-CoA hydratase; 98.7 3.6E-07 7.8E-12 85.7 15.7 139 128-266 24-203 (288)
102 KOG1680|consensus 98.7 1E-07 2.2E-12 87.1 11.2 138 129-266 58-214 (290)
103 PRK07938 enoyl-CoA hydratase; 98.7 5.1E-07 1.1E-11 82.9 16.1 136 130-266 23-178 (249)
104 cd07014 S49_SppA Signal peptid 98.7 3.9E-07 8.4E-12 79.3 14.0 128 132-266 19-168 (177)
105 PLN02874 3-hydroxyisobutyryl-C 98.7 5E-07 1.1E-11 87.9 15.7 152 105-266 17-191 (379)
106 PRK12478 enoyl-CoA hydratase; 98.7 7.7E-07 1.7E-11 83.9 15.3 151 105-266 11-196 (298)
107 cd00394 Clp_protease_like Case 98.7 4E-07 8.8E-12 77.7 12.2 91 128-228 4-96 (161)
108 PRK11730 fadB multifunctional 98.6 1.2E-06 2.6E-11 91.8 17.8 138 129-266 28-189 (715)
109 PLN02157 3-hydroxyisobutyryl-C 98.6 2.1E-06 4.5E-11 84.0 17.0 152 105-266 43-219 (401)
110 PLN02988 3-hydroxyisobutyryl-C 98.6 2.5E-06 5.5E-11 83.0 16.0 151 106-266 16-191 (381)
111 TIGR02440 FadJ fatty oxidation 98.5 1.6E-06 3.4E-11 90.8 15.3 138 129-266 23-185 (699)
112 PLN02851 3-hydroxyisobutyryl-C 98.5 5.9E-06 1.3E-10 80.9 17.1 138 128-266 62-224 (407)
113 TIGR02437 FadB fatty oxidation 98.5 2.7E-06 5.8E-11 89.2 15.1 139 128-266 27-189 (714)
114 TIGR02441 fa_ox_alpha_mit fatt 98.5 3.2E-06 6.8E-11 88.9 15.4 138 129-266 35-197 (737)
115 PRK12553 ATP-dependent Clp pro 98.4 2E-06 4.4E-11 76.9 11.0 134 123-266 35-201 (207)
116 PRK11154 fadJ multifunctional 98.4 1E-05 2.2E-10 84.8 17.9 138 129-266 28-190 (708)
117 PRK00277 clpP ATP-dependent Cl 98.4 3.4E-06 7.3E-11 75.1 12.0 134 123-266 31-195 (200)
118 cd07023 S49_Sppa_N_C Signal pe 98.4 3.2E-06 7E-11 75.4 11.7 87 134-227 16-104 (208)
119 cd07013 S14_ClpP Caseinolytic 98.4 4E-06 8.7E-11 72.1 11.8 92 127-228 4-99 (162)
120 PRK10660 tilS tRNA(Ile)-lysidi 98.4 2E-07 4.3E-12 92.3 3.2 53 262-317 16-69 (436)
121 PRK08184 benzoyl-CoA-dihydrodi 98.4 6.6E-06 1.4E-10 83.6 14.2 137 130-266 297-468 (550)
122 TIGR03222 benzo_boxC benzoyl-C 98.3 1.5E-05 3.3E-10 80.9 14.5 137 130-266 293-464 (546)
123 PF00574 CLP_protease: Clp pro 98.3 7.1E-06 1.5E-10 71.6 10.7 134 123-266 16-180 (182)
124 TIGR03222 benzo_boxC benzoyl-C 98.3 5.6E-05 1.2E-09 76.8 18.5 137 130-266 43-211 (546)
125 PRK14512 ATP-dependent Clp pro 98.3 1.6E-05 3.4E-10 70.6 12.8 132 125-266 25-187 (197)
126 CHL00028 clpP ATP-dependent Cl 98.3 1.1E-05 2.5E-10 71.7 11.9 135 122-266 29-195 (200)
127 PRK12551 ATP-dependent Clp pro 98.2 1.8E-05 3.8E-10 70.2 12.3 132 122-266 24-189 (196)
128 cd07022 S49_Sppa_36K_type Sign 98.2 3.3E-05 7.1E-10 69.3 14.0 90 130-227 20-111 (214)
129 PRK14514 ATP-dependent Clp pro 98.2 2.2E-05 4.7E-10 70.8 12.3 132 122-266 53-218 (221)
130 PRK08184 benzoyl-CoA-dihydrodi 98.2 5.3E-05 1.2E-09 77.1 16.2 137 130-266 47-215 (550)
131 TIGR00493 clpP ATP-dependent C 98.2 3.5E-05 7.6E-10 68.1 12.5 131 123-266 26-190 (191)
132 cd07017 S14_ClpP_2 Caseinolyti 98.1 1.6E-05 3.5E-10 68.9 9.8 96 123-228 9-108 (171)
133 TIGR00706 SppA_dom signal pept 98.1 3.8E-05 8.2E-10 68.6 12.0 84 136-227 14-99 (207)
134 PRK14513 ATP-dependent Clp pro 98.1 9E-05 1.9E-09 65.9 13.2 135 122-266 26-191 (201)
135 COG1030 NfeD Membrane-bound se 98.0 8.9E-05 1.9E-09 72.3 12.5 138 106-266 24-187 (436)
136 COG0037 MesJ tRNA(Ile)-lysidin 98.0 5.5E-06 1.2E-10 77.5 4.1 51 262-317 22-72 (298)
137 COG0447 MenB Dihydroxynaphthoi 98.0 3.1E-05 6.6E-10 68.8 8.4 137 130-267 41-204 (282)
138 COG0616 SppA Periplasmic serin 97.9 9.9E-05 2.2E-09 70.2 11.6 88 131-227 79-166 (317)
139 cd07018 S49_SppA_67K_type Sign 97.9 0.00014 2.9E-09 65.7 11.4 90 130-227 24-115 (222)
140 COG0740 ClpP Protease subunit 97.9 0.00017 3.7E-09 63.8 11.3 132 127-268 31-193 (200)
141 cd07019 S49_SppA_1 Signal pept 97.9 8.6E-05 1.9E-09 66.5 9.5 85 135-226 21-107 (211)
142 PRK12552 ATP-dependent Clp pro 97.8 0.00024 5.2E-09 64.1 11.0 143 123-266 30-213 (222)
143 TIGR00705 SppA_67K signal pept 97.7 0.00026 5.6E-09 72.7 11.1 81 136-223 330-412 (584)
144 PRK11778 putative inner membra 97.7 0.00061 1.3E-08 65.0 12.2 80 140-227 113-192 (330)
145 KOG0840|consensus 97.7 0.00025 5.3E-09 64.4 8.8 138 122-269 91-259 (275)
146 PF01972 SDH_sah: Serine dehyd 97.6 0.00074 1.6E-08 62.3 11.9 88 130-228 70-157 (285)
147 KOG1682|consensus 97.5 0.00079 1.7E-08 59.4 9.2 148 106-266 40-211 (287)
148 KOG0368|consensus 97.4 0.00023 4.9E-09 77.3 6.1 133 95-236 1527-1730(2196)
149 cd01986 Alpha_ANH_like Adenine 97.3 0.00012 2.5E-09 57.9 1.9 45 269-317 3-47 (103)
150 PRK10696 tRNA 2-thiocytidine b 97.2 0.00028 6E-09 65.2 3.8 52 262-316 30-84 (258)
151 KOG1681|consensus 97.2 0.00044 9.6E-09 62.0 4.4 108 176-292 113-231 (292)
152 PRK10949 protease 4; Provision 95.9 0.069 1.5E-06 55.4 10.9 80 137-223 349-430 (618)
153 PF01343 Peptidase_S49: Peptid 95.8 0.023 5E-07 48.2 6.0 41 187-227 4-44 (154)
154 KOG1679|consensus 95.7 0.035 7.6E-07 49.6 6.9 137 129-266 52-211 (291)
155 TIGR00884 guaA_Cterm GMP synth 95.2 0.014 3.1E-07 55.4 2.9 46 262-314 17-62 (311)
156 PRK00074 guaA GMP synthase; Re 94.3 0.037 8E-07 56.1 3.4 47 262-315 216-262 (511)
157 PRK00919 GMP synthase subunit 93.4 0.053 1.2E-06 51.4 2.6 39 262-306 22-60 (307)
158 cd01996 Alpha_ANH_like_III Thi 91.5 0.13 2.8E-06 43.1 2.3 35 269-306 6-40 (154)
159 TIGR00268 conserved hypothetic 90.8 0.15 3.2E-06 46.9 2.2 38 262-306 13-50 (252)
160 PRK05253 sulfate adenylyltrans 87.9 0.28 6E-06 46.5 1.7 41 262-305 28-68 (301)
161 TIGR02039 CysD sulfate adenyly 87.3 0.33 7E-06 45.8 1.7 37 269-305 24-60 (294)
162 KOG1684|consensus 84.5 12 0.00027 36.1 10.8 147 109-266 48-221 (401)
163 TIGR00552 nadE NAD+ synthetase 83.8 1.3 2.7E-05 40.6 3.8 39 261-305 22-60 (250)
164 PLN02347 GMP synthetase 83.1 0.99 2.1E-05 46.2 3.1 41 262-308 230-270 (536)
165 TIGR00705 SppA_67K signal pept 82.9 7.5 0.00016 40.2 9.4 86 134-227 75-163 (584)
166 TIGR03573 WbuX N-acetyl sugar 82.5 1.1 2.5E-05 43.0 3.1 34 269-305 64-97 (343)
167 PRK12563 sulfate adenylyltrans 80.7 1 2.3E-05 42.7 2.1 37 269-305 42-78 (312)
168 PRK08576 hypothetical protein; 80.5 1.4 3E-05 43.9 3.0 33 269-305 239-271 (438)
169 PRK13980 NAD synthetase; Provi 79.9 2.1 4.6E-05 39.5 3.9 39 262-305 31-69 (265)
170 PRK10949 protease 4; Provision 79.7 9.5 0.00021 39.8 8.9 86 134-227 94-182 (618)
171 PRK12311 rpsB 30S ribosomal pr 77.3 2.6 5.5E-05 40.4 3.6 42 101-162 145-186 (326)
172 TIGR00342 thiazole biosynthesi 76.2 2.4 5.1E-05 41.3 3.1 38 262-306 173-210 (371)
173 cd01984 AANH_like Adenine nucl 74.7 1.8 3.8E-05 32.3 1.4 32 269-301 3-34 (86)
174 COG3969 Predicted phosphoadeno 72.7 2.8 6E-05 40.2 2.5 37 261-300 27-64 (407)
175 PRK02090 phosphoadenosine phos 72.0 3.1 6.8E-05 37.8 2.7 37 262-305 41-77 (241)
176 COG0052 RpsB Ribosomal protein 69.3 5 0.00011 36.8 3.3 42 100-161 148-189 (252)
177 cd00553 NAD_synthase NAD+ synt 68.4 7.7 0.00017 35.3 4.4 40 261-305 23-62 (248)
178 COG0175 CysH 3'-phosphoadenosi 66.2 2.8 6E-05 38.8 1.0 43 269-315 44-87 (261)
179 PRK13794 hypothetical protein; 61.5 4.5 9.8E-05 40.8 1.6 34 269-305 252-285 (479)
180 PRK08557 hypothetical protein; 61.2 4.6 0.0001 40.0 1.6 35 269-307 186-221 (417)
181 PRK05299 rpsB 30S ribosomal pr 61.2 7.6 0.00016 36.0 2.9 42 101-162 150-191 (258)
182 TIGR01011 rpsB_bact ribosomal 60.9 8.2 0.00018 35.0 3.0 42 101-162 148-189 (225)
183 PRK12319 acetyl-CoA carboxylas 60.0 23 0.00049 32.8 5.8 28 35-73 6-33 (256)
184 CHL00067 rps2 ribosomal protei 59.4 9.3 0.0002 34.7 3.2 39 104-162 157-195 (230)
185 PF06626 DUF1152: Protein of u 58.4 36 0.00078 32.2 6.9 67 138-204 103-171 (297)
186 COG0519 GuaA GMP synthase, PP- 56.4 8 0.00017 36.2 2.2 34 269-305 26-59 (315)
187 PRK13795 hypothetical protein; 56.4 5.2 0.00011 41.9 1.1 35 269-307 248-283 (636)
188 COG1606 ATP-utilizing enzymes 52.9 8.9 0.00019 35.4 1.9 20 269-288 22-41 (269)
189 COG0052 RpsB Ribosomal protein 51.8 40 0.00086 31.1 5.8 20 181-200 171-190 (252)
190 PRK01565 thiamine biosynthesis 51.2 8 0.00017 37.9 1.4 33 262-301 177-209 (394)
191 TIGR02057 PAPS_reductase phosp 50.4 10 0.00022 34.3 1.8 38 262-305 26-63 (226)
192 TIGR00434 cysH phosophoadenyly 48.9 10 0.00022 33.6 1.6 33 269-305 18-50 (212)
193 TIGR01012 Sa_S2_E_A ribosomal 48.8 18 0.0004 32.1 3.2 22 141-162 121-142 (196)
194 PRK06850 hypothetical protein; 48.0 14 0.0003 37.6 2.6 44 268-311 38-87 (507)
195 cd01425 RPS2 Ribosomal protein 47.7 19 0.00042 31.6 3.2 37 105-161 124-160 (193)
196 PF02540 NAD_synthase: NAD syn 47.1 16 0.00035 33.4 2.6 29 256-288 14-42 (242)
197 PRK04020 rps2P 30S ribosomal p 46.7 22 0.00048 31.8 3.4 22 141-162 127-148 (204)
198 PRK02628 nadE NAD synthetase; 45.9 19 0.00041 38.0 3.3 44 253-300 354-400 (679)
199 CHL00198 accA acetyl-CoA carbo 45.1 60 0.0013 31.1 6.2 52 6-67 34-85 (322)
200 PRK08384 thiamine biosynthesis 43.4 11 0.00023 37.0 0.9 31 269-303 185-215 (381)
201 COG4618 ArpD ABC-type protease 42.8 50 0.0011 33.7 5.5 69 150-229 488-556 (580)
202 COG4245 TerY Uncharacterized p 42.4 39 0.00085 29.9 4.1 24 150-173 2-25 (207)
203 TIGR03183 DNA_S_dndC putative 41.0 17 0.00037 36.4 2.0 45 268-312 17-67 (447)
204 PRK01269 tRNA s(4)U8 sulfurtra 40.7 19 0.00041 36.4 2.2 38 261-305 177-214 (482)
205 PRK00876 nadE NAD synthetase; 40.0 21 0.00045 34.3 2.3 37 262-303 34-70 (326)
206 PRK05370 argininosuccinate syn 39.4 19 0.00042 35.9 2.0 36 262-304 12-47 (447)
207 COG2433 Uncharacterized conser 39.3 67 0.0015 33.3 5.8 86 56-161 204-298 (652)
208 TIGR00513 accA acetyl-CoA carb 39.2 1.3E+02 0.0027 28.8 7.4 56 6-73 31-86 (316)
209 PTZ00323 NAD+ synthase; Provis 37.9 20 0.00042 33.9 1.8 27 261-290 46-72 (294)
210 KOG0781|consensus 36.1 96 0.0021 31.6 6.2 86 106-200 405-506 (587)
211 PF00318 Ribosomal_S2: Ribosom 35.9 33 0.00072 30.6 2.8 22 141-162 156-177 (211)
212 PF04312 DUF460: Protein of un 35.7 1.5E+02 0.0032 24.9 6.3 48 94-161 37-86 (138)
213 cd01991 Asn_Synthase_B_C The C 35.1 30 0.00065 31.2 2.5 19 269-287 20-38 (269)
214 PRK11020 hypothetical protein; 34.4 87 0.0019 25.3 4.6 44 8-51 3-47 (118)
215 COG3222 Uncharacterized protei 34.2 52 0.0011 29.0 3.6 104 136-266 89-196 (211)
216 PTZ00254 40S ribosomal protein 34.2 34 0.00073 31.6 2.6 22 141-162 131-152 (249)
217 COG1570 XseA Exonuclease VII, 33.9 95 0.0021 31.1 5.8 91 133-239 174-264 (440)
218 KOG0073|consensus 33.9 81 0.0018 27.5 4.7 59 104-171 114-172 (185)
219 PF11020 DUF2610: Domain of un 33.4 53 0.0011 24.8 3.0 30 125-154 39-68 (82)
220 PF02601 Exonuc_VII_L: Exonucl 33.2 1.2E+02 0.0027 28.4 6.4 89 133-238 53-145 (319)
221 PRK10132 hypothetical protein; 32.7 1.1E+02 0.0025 24.4 5.1 52 5-56 7-62 (108)
222 PRK13981 NAD synthetase; Provi 32.4 58 0.0013 33.2 4.3 25 261-288 280-304 (540)
223 PRK00286 xseA exodeoxyribonucl 31.5 1.4E+02 0.003 29.5 6.7 89 133-238 174-262 (438)
224 PRK00736 hypothetical protein; 29.9 1.7E+02 0.0037 21.2 5.3 13 8-20 3-15 (68)
225 COG2082 CobH Precorrin isomera 29.7 1.9E+02 0.0041 26.0 6.5 15 184-199 174-188 (210)
226 PF00733 Asn_synthase: Asparag 29.4 27 0.00058 30.9 1.1 18 269-286 22-39 (255)
227 COG1160 Predicted GTPases [Gen 29.0 67 0.0014 32.1 3.9 46 102-167 20-65 (444)
228 PRK13600 putative ribosomal pr 28.8 1.3E+02 0.0028 23.0 4.6 19 139-157 43-61 (84)
229 PF14307 Glyco_tran_WbsX: Glyc 27.8 1.1E+02 0.0025 29.2 5.2 45 104-162 155-199 (345)
230 PRK13602 putative ribosomal pr 27.6 1.5E+02 0.0032 22.2 4.8 32 109-158 29-60 (82)
231 PLN03230 acetyl-coenzyme A car 27.4 2.7E+02 0.0058 27.8 7.6 55 6-73 101-156 (431)
232 PRK00768 nadE NAD synthetase; 25.8 70 0.0015 29.8 3.2 32 254-289 32-63 (268)
233 PF10609 ParA: ParA/MinD ATPas 24.9 93 0.002 23.6 3.2 27 136-162 38-64 (81)
234 cd05014 SIS_Kpsf KpsF-like pro 24.9 91 0.002 24.5 3.4 30 138-167 61-90 (128)
235 PRK09722 allulose-6-phosphate 24.7 2E+02 0.0043 26.1 5.9 47 109-164 133-179 (229)
236 COG3260 Ni,Fe-hydrogenase III 23.8 1.3E+02 0.0028 25.3 4.0 25 183-207 69-94 (148)
237 PRK05819 deoD purine nucleosid 23.7 5E+02 0.011 23.3 8.4 76 67-165 19-95 (235)
238 PRK02119 hypothetical protein; 23.5 2.5E+02 0.0055 20.6 5.2 41 6-50 5-45 (73)
239 KOG0259|consensus 23.5 1.4E+02 0.003 29.5 4.8 43 104-156 195-237 (447)
240 PRK09732 hypothetical protein; 23.4 1.6E+02 0.0035 24.4 4.7 34 132-165 7-42 (134)
241 PF04102 SlyX: SlyX; InterPro 23.2 2.6E+02 0.0057 20.1 5.2 39 8-50 9-47 (69)
242 PF06476 DUF1090: Protein of u 22.7 1.3E+02 0.0029 24.2 3.9 44 8-51 68-112 (115)
243 TIGR00237 xseA exodeoxyribonuc 22.7 2.2E+02 0.0048 28.3 6.3 89 133-238 168-257 (432)
244 PRK04406 hypothetical protein; 22.7 2.6E+02 0.0056 20.7 5.2 40 8-51 9-48 (75)
245 PLN02331 phosphoribosylglycina 21.8 1.1E+02 0.0024 27.3 3.6 34 105-160 25-58 (207)
246 PRK01018 50S ribosomal protein 21.7 2.2E+02 0.0047 22.1 4.9 35 108-160 33-67 (99)
247 KOG2840|consensus 21.6 97 0.0021 29.8 3.3 47 262-310 51-99 (347)
248 PRK13729 conjugal transfer pil 21.6 1.5E+02 0.0032 30.0 4.7 44 8-51 74-120 (475)
249 PF08645 PNK3P: Polynucleotide 21.5 3.4E+02 0.0073 22.8 6.4 46 106-160 44-90 (159)
250 COG1830 FbaB DhnA-type fructos 21.3 3.1E+02 0.0067 25.6 6.4 39 127-165 118-157 (265)
251 COG0532 InfB Translation initi 20.9 1.3E+02 0.0028 30.7 4.2 47 151-197 53-115 (509)
252 COG4575 ElaB Uncharacterized c 20.3 3.4E+02 0.0074 21.6 5.6 39 13-51 15-53 (104)
253 PF02570 CbiC: Precorrin-8X me 20.3 2E+02 0.0043 25.6 4.8 21 184-206 165-185 (198)
254 PRK08227 autoinducer 2 aldolas 20.1 3E+02 0.0065 25.6 6.2 25 134-158 123-147 (264)
255 PF08946 Osmo_CC: Osmosensory 20.1 1.3E+02 0.0028 20.2 2.7 22 5-26 14-35 (46)
256 PF01855 POR_N: Pyruvate flavo 20.0 1.1E+02 0.0024 27.6 3.3 28 133-160 127-154 (230)
No 1
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=100.00 E-value=2.6e-65 Score=476.36 Aligned_cols=269 Identities=64% Similarity=1.059 Sum_probs=258.9
Q ss_pred CCccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhc
Q psy14493 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIF 80 (318)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~ 80 (318)
||.++||||+||.+++++|++|+........+..++|.++++++++++++||.+||+|||+++++||++||++++|+.+|
T Consensus 1 ~~~~~l~fe~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~w~~v~~ar~~~Rp~~~d~I~~l~ 80 (319)
T PRK05724 1 MMLNYLDFEKPIAELEAKIEELRAVAEDSDVDLSEEIERLEKKLEELTKKIYSNLTPWQKVQLARHPQRPYTLDYIELLF 80 (319)
T ss_pred CCcchhhhhhHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcCCCHHHhhhcccCCCCCCHHHHHHHHh
Confidence 67899999999999999999999876655667778999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 81 TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 81 d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
|+|.|++|++.|+||+++|||+|+|||+||+|++||++.+++++..+++|++++++++|+.|++++|++|++|||+|+||
T Consensus 81 d~f~El~gdr~~~dd~aiV~G~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDT 160 (319)
T PRK05724 81 TDFTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDT 160 (319)
T ss_pred hHHHHHcCCcCCCCCCceEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccc
Q psy14493 161 PGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240 (318)
Q Consensus 161 ~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~ 240 (318)
||++++.++|..|+.+++++++.+++..+||+|+||+|+|+|||+++++.+|+++|||+|.+++++||+|++|+|++...
T Consensus 161 pGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~svisPEg~a~Il~~~~~~ 240 (319)
T PRK05724 161 PGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCASILWKDASK 240 (319)
T ss_pred CCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEeecCHHHHHHHHhcCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 241 ASDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 241 ~~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
++++++.+++||+++++.|+||+||++|.
T Consensus 241 a~~aae~~~ita~~l~~~g~iD~II~Ep~ 269 (319)
T PRK05724 241 APEAAEAMKITAQDLKELGIIDEIIPEPL 269 (319)
T ss_pred HHHHHHHcCCCHHHHHHCCCceEeccCCC
Confidence 88899999999999999999999999985
No 2
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=2.2e-64 Score=469.65 Aligned_cols=269 Identities=59% Similarity=0.992 Sum_probs=258.1
Q ss_pred CCccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhc
Q psy14493 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIF 80 (318)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~ 80 (318)
||..+||||+||.+++++|++|+........+..++|.++++++++++++||.+||+|||+++.+||++||++++|..+|
T Consensus 1 ~m~~~~~fe~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~w~~v~~ar~~~Rp~~~d~i~~l~ 80 (316)
T TIGR00513 1 MMANYLDFEKPIAELEAKIESLRARSRDEDVDLSEEIERLEKRSVELTKKIFSNLGAWQRLQLARHPDRPYTLDYIELIF 80 (316)
T ss_pred CCcchhhhhHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCchHHHHHHHh
Confidence 78889999999999999999998877665666777999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 81 TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 81 d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
|+|.|++++..|+||+++|||+|+|+|+||+|++||++.+++++..+++|++++.+++|+.|++++|+++++|||+|+||
T Consensus 81 d~f~EL~gd~~~~dd~aiVtG~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDT 160 (316)
T TIGR00513 81 DDFFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDT 160 (316)
T ss_pred hhheeeccccCCCCCCceEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 99999999988999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred CCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccc
Q psy14493 161 PGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240 (318)
Q Consensus 161 ~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~ 240 (318)
||++++.++|..|+..++++++.+++..+||+||||+|+|+||||++++.+|+++||++|.++|++||+|++|+|++...
T Consensus 161 pGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sVisPEg~a~Il~kd~~~ 240 (316)
T TIGR00513 161 PGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKDASK 240 (316)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEEecCHHHHHHHhccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 241 ASDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 241 ~~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
++++++.++++|.+++++|+||+||++|.
T Consensus 241 a~~aae~~~~ta~~l~~~G~iD~II~ep~ 269 (316)
T TIGR00513 241 APKAAEAMKITAPDLKELGLIDSIIPEPL 269 (316)
T ss_pred HHHHHHHccCCHHHHHHCCCCeEeccCCC
Confidence 88888999999999999999999999985
No 3
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=100.00 E-value=4.6e-64 Score=467.41 Aligned_cols=269 Identities=48% Similarity=0.834 Sum_probs=258.2
Q ss_pred CCccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhc
Q psy14493 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIF 80 (318)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~ 80 (318)
|+.++||||+||.+++.+|++|+........+..++|.++++++++++++||.+||+|||+++.++|+||+..++|+.+|
T Consensus 4 ~~~~~l~fe~~i~el~~~i~~l~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~w~~v~~aR~~~Rp~~~d~i~~l~ 83 (322)
T CHL00198 4 RKPHVPDFMKPLAELESQVEELSKLAPKNDKVINNKLKSFQRKLRILKKEIFYSLTPLQRLHLVRQSERPTTLDYIPYIL 83 (322)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 44467999999999999999999877665677778999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 81 TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 81 d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
|+|.|++|++.|+||+++|+|+|+|||+||+|++||++.+++++..+++|++++.+++|+.|++++|+++++|||+|+||
T Consensus 84 d~f~El~gd~~~~dd~avV~Glgri~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDT 163 (322)
T CHL00198 84 DEWIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDT 163 (322)
T ss_pred HHHHHHccccccCCCCceEEEEEEECCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999988899999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccc
Q psy14493 161 PGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240 (318)
Q Consensus 161 ~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~ 240 (318)
||++++.++|..|+...+++++.+++..+||+||||+|+|+|||||+++.+|+++||++|+++|++||+|++|+|++..+
T Consensus 164 pGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sVisPEg~a~Il~~d~~~ 243 (322)
T CHL00198 164 PGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAAILWKDSKK 243 (322)
T ss_pred CCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEecCHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 241 ASDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 241 ~~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
++++++.+++|+.++++.|+||+||++|.
T Consensus 244 a~~aA~~~~ita~dL~~~giiD~ii~Ep~ 272 (322)
T CHL00198 244 SLDAAEALKITSEDLKVLGIIDEIIPEPI 272 (322)
T ss_pred HHHHHHHcCCCHHHHHhCCCCeEeccCCC
Confidence 99999999999999999999999999985
No 4
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=100.00 E-value=2.5e-65 Score=461.12 Aligned_cols=268 Identities=61% Similarity=1.027 Sum_probs=262.3
Q ss_pred CccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcc
Q psy14493 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFT 81 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d 81 (318)
|.+++|||+++.+++.+|++|....+....+..+.|+++++++.+++++||.+||+|||+++.+||+||+.+||++.+|+
T Consensus 1 ~~~~ldfEkpi~ele~kI~~l~~~~~~~~~~~~~eI~~Le~~~~~~~~~iy~~L~~wq~~q~ARhp~RP~tldyi~~i~~ 80 (317)
T COG0825 1 MANYLDFEKPIAELEAKIDELKALAEENDVDLSDEIERLEKRLAELTKKIYSNLTPWQRVQLARHPDRPYTLDYIELLFT 80 (317)
T ss_pred CCCcchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHhhHHHHhhhhhccCCHHHHHHHhhCCCCCcHHHHHHHHHh
Confidence 47899999999999999999999887777788889999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy14493 82 DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP 161 (318)
Q Consensus 82 ~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~ 161 (318)
+|.|++||+.|+||+++|.|+||++|+||+|++++++.++++++.+|+|+..|++|||+.|+|++|++|++|||+|+||+
T Consensus 81 df~eL~GDR~f~dD~Aivgglar~~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~ 160 (317)
T COG0825 81 DFVELHGDRAFADDPAIVGGLARFGGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTP 160 (317)
T ss_pred HHHHhcCccccCcChhheeeeeeECCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccch
Q psy14493 162 GAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241 (318)
Q Consensus 162 Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~ 241 (318)
|++||.++|++||..+|++++..|+.+.||+||+|+|++.+|||++++.+|.|+|.++|.++|++||||++|+|++..++
T Consensus 161 GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySVisPEG~AsILWkD~~ka 240 (317)
T COG0825 161 GAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSVISPEGCASILWKDASKA 240 (317)
T ss_pred CCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeeecChhhhhhhhhcChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 242 ~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
+++++.|++++.+++++|+||.||++|.
T Consensus 241 ~eAAe~mkita~dLk~lgiID~II~Ep~ 268 (317)
T COG0825 241 KEAAEAMKITAHDLKELGIIDGIIPEPL 268 (317)
T ss_pred HHHHHHcCCCHHHHHhCCCcceeccCCC
Confidence 9999999999999999999999999987
No 5
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=100.00 E-value=2.7e-63 Score=471.48 Aligned_cols=268 Identities=49% Similarity=0.823 Sum_probs=257.5
Q ss_pred CccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcc
Q psy14493 2 KNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFT 81 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d 81 (318)
++++||||+||.+|+++|++|+........+..++|.++++++.+++++||.+||+|||+++.+||+||+..|||..+||
T Consensus 72 ~~~~l~fe~pi~ele~ki~el~~~~~~~~~~~~~ei~~l~~~~~~~~~~i~~~Lt~wq~vq~aRhp~RP~~~d~I~~i~d 151 (431)
T PLN03230 72 KPVTLPFEKPIVDLENRIDEVRELANKTGVDFSAQIAELEERYDQVRRELYSRLTPVQRLSVARHPNRPTFLDHVLNMTD 151 (431)
T ss_pred CCCccchhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCHHHHHHHhhh
Confidence 35799999999999999999998776556677789999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy14493 82 DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP 161 (318)
Q Consensus 82 ~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~ 161 (318)
+|.|++|++.|+||+++|||+|+|+|+||+|++||++++++++..+++|++++++++|+.|++++|++|++|||+|+||+
T Consensus 152 df~EL~Gdr~~~dD~aIVtG~grI~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVtLVDTp 231 (431)
T PLN03230 152 KWVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTP 231 (431)
T ss_pred HHhhhcCcccCCCCCCeEEEEEEECCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccch
Q psy14493 162 GAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241 (318)
Q Consensus 162 Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~ 241 (318)
|++++.++|..|+..++++++.+++.++||+|+||+|+|+||||++++.+|+++||++|.+++++|++|++|+|++...+
T Consensus 232 GA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysVisPEgaAsILwkd~~~A 311 (431)
T PLN03230 232 GAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYVASPEACAAILWKSAAAA 311 (431)
T ss_pred CcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEecCHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 242 ~~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
+++++.+++||.+++++|+||+||++|.
T Consensus 312 ~eAAealkitA~dL~~~GiID~II~Ep~ 339 (431)
T PLN03230 312 PKAAEALRITAAELVKLGVVDEIVPEPL 339 (431)
T ss_pred HHHHHHcCCCHHHHHhCCCCeEeccCCC
Confidence 8999999999999999999999999985
No 6
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=100.00 E-value=5e-61 Score=479.32 Aligned_cols=267 Identities=49% Similarity=0.795 Sum_probs=257.4
Q ss_pred ccccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhccc
Q psy14493 3 NIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTD 82 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~ 82 (318)
+.+||||+||.+++.+|++|+........+..++|.++++++.+++++||.+|||||||++++||+||+..||+..+|++
T Consensus 94 ~~~ldfEkpi~ele~ki~el~~~~~~~~~~~~~ei~~Le~k~~~~~~~iy~~LT~werV~~aR~p~RP~~~Dyi~~i~dd 173 (762)
T PLN03229 94 PVTLDFEKPLVDLEKKIVDVRKMANETGLDFSDQIISLESKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHIFNITDK 173 (762)
T ss_pred CCCcchhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 56999999999999999999987665566777899999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy14493 83 IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 83 ~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~G 162 (318)
|.|++|++.|+||+++|||+|+|||+||+|+++|+++++++++.+++|++++.+++|+.|++++|++|++|||+|+||||
T Consensus 174 f~EL~Gdr~~~dD~aIVtGlGRIdGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpG 253 (762)
T PLN03229 174 FVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 253 (762)
T ss_pred HHHhcCcccCCCCCCeEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccchH
Q psy14493 163 AFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRAS 242 (318)
Q Consensus 163 a~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~ 242 (318)
++++.++|..|+.+++++++.+++..+||+|+||+|+|+|||||+++++|+++||++|+|+++||++|++|+|++...++
T Consensus 254 A~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sVisPEgaAsILwkd~~~A~ 333 (762)
T PLN03229 254 AYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKAAP 333 (762)
T ss_pred cCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEecCHHHHHHHHhcCcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHcCCcceeecCcc
Q psy14493 243 DAAEALGLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 243 ~a~e~~~~~a~~a~~~G~vD~ii~~p~ 269 (318)
++++.+++||.++.++|+||+||++|.
T Consensus 334 eAAe~lkiTa~dL~~lGiiD~IIpEp~ 360 (762)
T PLN03229 334 KAAEKLRITAQELCRLQIADGIIPEPL 360 (762)
T ss_pred HHHHHcCCCHHHHHhCCCCeeeccCCC
Confidence 999999999999999999999999985
No 7
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=100.00 E-value=4.8e-50 Score=366.10 Aligned_cols=214 Identities=52% Similarity=0.858 Sum_probs=204.6
Q ss_pred CCHHHHHHhhcCCCCCchhhHHhhhcccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCH
Q psy14493 55 LTPWQISQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKP 134 (318)
Q Consensus 55 ltareRi~~~~d~~~~~~~~~i~~~~d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~ 134 (318)
.++||++++.+++++|..+++|+.+||+|.|+++++.|++|.++|||+|+|||+||+|++||++.+++++..+++|++++
T Consensus 2 ~~~~~~v~~ar~~~r~~are~I~~L~D~F~El~g~~~~~~d~~vItG~gri~Gr~V~via~~~~~~~~d~~~~~~G~~~~ 81 (256)
T PRK12319 2 TDVARILKEARDQGRLTTLDYATLIFDDFMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKGKNLQDNLKRNFGQPHP 81 (256)
T ss_pred CCHHHHHHHhccCCCCCHHHHHHHhCchheeccCCCCCCCCCcEEEEEEEECCEEEEEEEeccCCccccceeeeCCCCCH
Confidence 46999999999999999999999999999999988788877789999999999999999999998777777789999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEE
Q psy14493 135 EGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDIT 214 (318)
Q Consensus 135 ~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~v 214 (318)
.+++|+.|++++|+++++|||+|+||||++++.++|..|+.+.+++++.++++.+||+|++|+|+|+|||+|+++.+|++
T Consensus 82 ~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v 161 (256)
T PRK12319 82 EGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQV 161 (256)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEE
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCc
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEP 268 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p 268 (318)
+|||++.+++++||++++|+|++...++++++.++++|++++++|+||+||++|
T Consensus 162 ~m~~~a~~~v~~pe~~a~il~~~~~~a~~aa~~~~~~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 162 WMLENTMYAVLSPEGFASILWKDGSRATEAAELMKITAGELLEMGVVDKVIPEH 215 (256)
T ss_pred EEecCceEEEcCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHHCCCCcEecCCC
Confidence 999999999999999999999998888888999999999999999999999976
No 8
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=8e-42 Score=334.36 Aligned_cols=225 Identities=26% Similarity=0.434 Sum_probs=200.7
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+++|||+ ++|.++||+ |.|++. .|+ +++||||+||+|+||+||||++. +++|.|+++++.
T Consensus 279 ivP~d~~~pYDvrevI~rl~D~~~F~E~~~--~~a--~~iV~GfaRi~G~pVGiIANqp~--------~~~G~l~~~sa~ 346 (526)
T COG4799 279 IVPDDPRKPYDVREVIARLVDDGEFLEFKA--GYA--KNIVTGFARIDGRPVGIIANQPR--------HLGGVLDIDSAD 346 (526)
T ss_pred cCCCCCCccccHHHHHHHhcCCccHHHHHh--hhC--cceEEEEEEECCEEEEEEecCcc--------ccccccchHHHH
Confidence 578999999996 899999995 999984 499 79999999999999999999999 599999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|++||+++|+.++||||+|+|+|||.+|...|..|++++.++++.+++.++||+|++|+|+++|||.|+|+. +||+
T Consensus 347 KaArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~ 426 (526)
T COG4799 347 KAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFN 426 (526)
T ss_pred HHHHHHHhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863 8999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccchH----H-H--------HHHh--cccHHHHHHcCCcceeecCccccCCCCchHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRAS----D-A--------AEAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSV 279 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~~----~-a--------~e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ 279 (318)
+|||+|+++||||++++++++++..... + . .++. ..+|+.+.++|+||.||+ |. |+|.
T Consensus 427 ~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~-p~------~tR~ 499 (526)
T COG4799 427 YAWPTAEIAVMGPEGAVSILYRKELAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVID-PA------DTRA 499 (526)
T ss_pred EecCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccC-HH------HHHH
Confidence 9999999999999999999997644211 1 0 1111 158999999999999999 88 9999
Q ss_pred HHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 280 LLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 280 ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
.|+..++....++. ...+-..|+++|
T Consensus 500 ~L~~~l~~~~~k~~-~~~~~kk~g~~~ 525 (526)
T COG4799 500 VLGRALSALANKPV-VETPLKKHGNIP 525 (526)
T ss_pred HHHHHHHHHhcCcc-ccccccccCCCC
Confidence 99999998887643 345667798875
No 9
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=100.00 E-value=2.2e-39 Score=322.90 Aligned_cols=224 Identities=26% Similarity=0.434 Sum_probs=197.2
Q ss_pred HhhcCCCCCchh-hHHhhhcc--cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFT--DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d--~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+.+||++ ++|+.++| .|.|+++ .|+ +++|||+|+|+|+||+|++||++ +++|++++.+++
T Consensus 270 ~iP~~~~~~~d~r~~i~~l~D~~sf~El~~--~~g--~~vVtG~gri~G~~V~vvAnd~~--------~~~G~~~~~~~~ 337 (512)
T TIGR01117 270 LLPDNPNKPYDMRDVITAIVDNGDYLEVQP--YYA--PNIITCFARINGQSVGIIANQPK--------VMAGCLDIDSSD 337 (512)
T ss_pred hCCCCCCCCCCHHHHHHHhCCCCceEEeec--cCC--CcEEEEEEEECCEEEEEEEeccc--------cccCCCCHHHHH
Confidence 368899999995 89999999 4999985 477 69999999999999999999999 499999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|++|++++|+++++|||+|+||+|+.++..+|..|+..++++++.+++..+||+|++|+|+|+|||+++++. +|++
T Consensus 338 K~~r~i~~a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~ 417 (512)
T TIGR01117 338 KIARFIRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQV 417 (512)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998887753 8999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccch---HH-H-----HHHh--cccHHHHHHcCCcceeecCccccCCCCchHHHHHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRA---SD-A-----AEAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDI 283 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~---~~-a-----~e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~ 283 (318)
+|||+|++++|||++++.++|+++... ++ + .++. ..+|+.+.++|+||.||+ |. |+|..|..
T Consensus 418 ~a~p~a~~~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~-P~------~tR~~l~~ 490 (512)
T TIGR01117 418 YAWPTAEIAVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVIE-PK------QTRPKIVN 490 (512)
T ss_pred EEcCCCeEeecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeEC-hH------HHHHHHHH
Confidence 999999999999999999999875321 11 1 1111 258999999999999999 88 99999999
Q ss_pred HHHHhhccCccccccCCCCCCCC
Q psy14493 284 SFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+++++..... ..++.+|+++|
T Consensus 491 ~l~~~~~~~~--~~~~~~~~~~p 511 (512)
T TIGR01117 491 ALAMLESKRE--KLPPKKHGNIP 511 (512)
T ss_pred HHHHHhcCcc--cCCCCCCCCCC
Confidence 9998766443 35778899886
No 10
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=100.00 E-value=1.1e-38 Score=319.61 Aligned_cols=233 Identities=20% Similarity=0.196 Sum_probs=188.6
Q ss_pred cccchhhhHHHHHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCC-CchhhHHhhhcc
Q psy14493 4 IFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKR-PYTLDYIREIFT 81 (318)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~-~~~~~~i~~~~d 81 (318)
+...|++|.+.|++++++|+++++....+|++ +++|||++ ||||+||||+.++|+++ |.+++-+..
T Consensus 39 ~~~~~~~n~~~~~~~~~~l~~~~~~~~~~gg~~~v~r~~~~---------gkltaReRI~~LlD~gS~F~El~~lag--- 106 (569)
T PLN02820 39 NSDAFSANSKAMEGLLSELRSHVAKVRAGGGPEAVKRHRSR---------NKLLPRERIDRLLDPGSPFLELSQLAG--- 106 (569)
T ss_pred CCHHHHhCHHHHHHHHHHHHHHHHHHHhcCCHhHHHhhhhc---------CCCCHHHHHHHHcCCCCCeEEchhhcc---
Confidence 45579999999999999999998887666555 89999999 99999999999999999 554432110
Q ss_pred cccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy14493 82 DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP 161 (318)
Q Consensus 82 ~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~ 161 (318)
+. ...++.++ +++|||+|+|||++|+|++||++ ++||++++.+++|+.|++++|.++++|||+|+||+
T Consensus 107 -~~-~y~~~~~~--dgVVtG~G~V~Gr~V~v~a~D~t--------v~GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSg 174 (569)
T PLN02820 107 -HE-LYGEDLPS--GGIVTGIGPVHGRLCMFVANDPT--------VKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSG 174 (569)
T ss_pred -CC-cccccCCC--CeEEEEEEEECCEEEEEEEECCC--------ccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 00 00123344 59999999999999999999999 49999999999999999999999999999999999
Q ss_pred CCCCchhHHhhc---hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhcc
Q psy14493 162 GAFPGIDAEERG---QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKT 237 (318)
Q Consensus 162 Ga~~~~~~e~~g---~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~ 237 (318)
|++++.+.|.+. +++.+++.+..+++.+||+|++|+|+|+|||+|.++++|+++|+++ ++|+++||+......-..
T Consensus 175 Garl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~aGP~vV~~~~Ge~ 254 (569)
T PLN02820 175 GANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATGEE 254 (569)
T ss_pred CcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEecCHHHHHhhcCcc
Confidence 999977666553 4578899999999888999999999999999999999999999986 999999998755444322
Q ss_pred ccchHHHHHHhcccHHHHH-HcCCcceeec
Q psy14493 238 SKRASDAAEALGLTADKLK-SIGLINKIIK 266 (318)
Q Consensus 238 ~~~~~~a~e~~~~~a~~a~-~~G~vD~ii~ 266 (318)
...++ + -++.... ..|.+|-+.+
T Consensus 255 -v~~ee----L-GGa~~h~~~sGv~d~~~~ 278 (569)
T PLN02820 255 -VSAED----L-GGADVHCKVSGVSDHFAQ 278 (569)
T ss_pred -cCHHH----h-CCHHHhcccccccccccC
Confidence 11222 1 2333222 4788888875
No 11
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=100.00 E-value=4.2e-37 Score=285.88 Aligned_cols=214 Identities=15% Similarity=0.099 Sum_probs=178.9
Q ss_pred cCCCCHHHHHHhhcCCCCCchhhH-Hhhhcc--cccc----------cccCCccCCCCcEEEEEEEEcCEEEEEEeecCC
Q psy14493 52 YSKLTPWQISQIARHPKRPYTLDY-IREIFT--DIHE----------LHGDRNYGDDLSIIGVLARINGESCMVIGHQKG 118 (318)
Q Consensus 52 ~~~ltareRi~~~~d~~~~~~~~~-i~~~~d--~~~e----------l~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~ 118 (318)
|-+||+||||+.+.|+++|.+++- +... | +|.. .... .+.++++|||+|+|||++|+|+++|++
T Consensus 55 h~rl~areRi~~L~D~gsF~E~~~~~~~~-d~l~f~~~~~Y~~~l~~~~~~--t~~~d~vVtG~g~I~G~~V~v~a~D~~ 131 (292)
T PRK05654 55 HMRISARERLDLLLDEGSFVELDAELEPK-DPLKFRDSKKYKDRLKAAQKK--TGLKDAVVTGKGTIEGMPVVLAVMDFS 131 (292)
T ss_pred CeeCCHHHHHHHHccCCccEEecCccccC-CcccCCcccccchHHHHhhhc--cCCCCcEEEEEEEECCEEEEEEEEecc
Confidence 478999999999999999888752 3221 1 1211 0111 122369999999999999999999999
Q ss_pred CCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 119 RNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 119 ~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
++||+++..+++|++|++++|.++++|||+|+||+|++++++.-.+.++.+++..+.+++..+||+|+||+|
T Consensus 132 --------f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~g 203 (292)
T PRK05654 132 --------FMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTD 203 (292)
T ss_pred --------cccCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 599999999999999999999999999999999999999998888888888999999999989999999999
Q ss_pred CCchhhhhhhcc-ccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCccccCCCCch
Q psy14493 199 EGGSGGALAIAV-SDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDS 277 (318)
Q Consensus 199 ~~~ggga~~~~~-~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds 277 (318)
+|+||+++.+++ +|+++|||+|.|+++||+.....+.. +..+. ..+++.+.++|+||.|++ |. |+
T Consensus 204 pt~GG~aas~a~~~D~iia~p~A~ig~aGprvie~~~~e------~lpe~-~~~ae~~~~~G~vD~Vv~-~~------e~ 269 (292)
T PRK05654 204 PTTGGVSASFAMLGDIIIAEPKALIGFAGPRVIEQTVRE------KLPEG-FQRAEFLLEHGAIDMIVH-RR------EL 269 (292)
T ss_pred CCchHHHHHHHHcCCEEEEecCcEEEecCHHHHHhhhhh------hhhhh-hcCHHHHHhCCCCcEEEC-HH------HH
Confidence 999999888764 99999999999999999876544421 11111 368899999999999999 77 99
Q ss_pred HHHHHHHHHHhhc
Q psy14493 278 SVLLDISFTLFCN 290 (318)
Q Consensus 278 ~~ll~~~~~l~~~ 290 (318)
+..|..+++++..
T Consensus 270 r~~l~~~L~~~~~ 282 (292)
T PRK05654 270 RDTLASLLALHTK 282 (292)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998754
No 12
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=2e-37 Score=303.39 Aligned_cols=248 Identities=17% Similarity=0.174 Sum_probs=203.5
Q ss_pred chhhhHHHHHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHH-hhhccccc
Q psy14493 7 NFEEPIIKLEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYI-REIFTDIH 84 (318)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i-~~~~d~~~ 84 (318)
+|..+...+..++++++++++....++++ +++++|++ ||||+||||+.++|||+|.+++.+ ..-.
T Consensus 3 ~~~~~~~~~~~~~~e~~~~~~~~~~~gg~~~~~~~~~~---------GkltaReRv~~LlD~Gsf~El~~~a~~~~---- 69 (526)
T COG4799 3 AFGMVAMTMAEKVAELRERRAIAVAGGGEKAVEKQHGK---------GKLTARERVELLLDPGSFLELGALAGHRM---- 69 (526)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhcCCHHHhhhcccc---------CcCcHHHHHHHHcCCCchhhhhhhhhccc----
Confidence 47788899999999999999887766666 89999999 999999999999999997766432 2111
Q ss_pred ccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy14493 85 ELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAF 164 (318)
Q Consensus 85 el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~ 164 (318)
+..++..++ +++|||+|+||||+|+|++||+|+ +||++++.+++|+.|++++|.+.++|+|.|+||+|++
T Consensus 70 ~~~~~~~~~--dGvVtG~G~i~Gr~~~v~a~D~TV--------~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGar 139 (526)
T COG4799 70 GGDANELPG--DGVVTGIGTINGRKVFVFANDFTV--------KGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGAR 139 (526)
T ss_pred ccccccCCC--CeeEEeeeeeCCeEEEEEEecCce--------ecccccccccchHHHHHHHHHHcCCCEEEEEcccccc
Confidence 112234466 599999999999999999999995 9999999999999999999999999999999999999
Q ss_pred CchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHH
Q psy14493 165 PGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASD 243 (318)
Q Consensus 165 ~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~ 243 (318)
++++.+.+..++.+|.+...+|+. ||||++|+|+|+|||+|.+++||++||+++ +.|++.||...-.++-.. ...++
T Consensus 140 i~~~v~~l~g~g~iF~~~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfltGP~~ik~vtGe~-V~~e~ 217 (526)
T COG4799 140 IQEGVPSLAGYGRIFYRNARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLTGPPVIKAVTGEE-VSAEE 217 (526)
T ss_pred cccCccccccchHHHHHHHHhccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEeeCHHHHHhhcCcE-eehhh
Confidence 999988888889999999999999 999999999999999999999999999999 999999999766555433 22222
Q ss_pred HHHHhcccHHHHHHc-CCcceeecCccccCCCCchHHHHHHHHHHhhc
Q psy14493 244 AAEALGLTADKLKSI-GLINKIIKEPIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 244 a~e~~~~~a~~a~~~-G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
.-.+.-..+. |.+|-+.+.-. |...++.+++..+..
T Consensus 218 -----LGGa~vh~~~sGva~~~a~dd~------~Ai~~vr~~lsylp~ 254 (526)
T COG4799 218 -----LGGAQVHARKSGVADLLAEDDE------DAIELVRRLLSYLPS 254 (526)
T ss_pred -----ccchhhhcccccceeeeecCHH------HHHHHHHHHHHhcCc
Confidence 1345555555 88888886333 444444555554443
No 13
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=100.00 E-value=5.5e-37 Score=307.47 Aligned_cols=207 Identities=20% Similarity=0.334 Sum_probs=183.9
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+.++||+ ++|+.++|+ |.|++ +.|+ +++|||+|||+|+||+||+|+ |++.+.+++
T Consensus 326 ivP~~~~~~yD~r~vi~~ivD~~sf~E~~--~~~g--~~iVtG~aRi~G~~VgvvAn~-------------g~l~~~~a~ 388 (569)
T PLN02820 326 IVPADHKQSFDVRSVIARIVDGSEFDEFK--KNYG--TTLVTGFARIYGQPVGIIGNN-------------GILFTESAL 388 (569)
T ss_pred ccCCCCCCCCCHHHHHHHhcCCceeEEec--ccCC--CcEEEEEEEECCEEEEEEEEC-------------CccCHHHHH
Confidence 468888999996 899999996 99998 4599 799999999999999999997 567899999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc----cccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~----~~D~v 214 (318)
|++||+++|+++++|||+|+|||||++|.++|..|+.+++++++.+++..+||+|++|+|+|+|+|+|+|+ .+|++
T Consensus 389 Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~ 468 (569)
T PLN02820 389 KGAHFIELCAQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFL 468 (569)
T ss_pred HHHHHHHHHHhcCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 48999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccc----------hHHHH-------HHh--cccHHHHHHcCCcceeecCccccCCCC
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKR----------ASDAA-------EAL--GLTADKLKSIGLINKIIKEPIAYSGGI 275 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~----------~~~a~-------e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ 275 (318)
+|||+|++++|||++++.++++.+.. .++.+ ++. ..+|+.+.++|+||+||+ |.
T Consensus 469 ~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VId-P~------ 541 (569)
T PLN02820 469 FMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVID-PA------ 541 (569)
T ss_pred EECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccC-HH------
Confidence 99999999999999999999975321 11110 111 368999999999999999 98
Q ss_pred chHHHHHHHHHHhhccC
Q psy14493 276 DSSVLLDISFTLFCNYK 292 (318)
Q Consensus 276 ds~~ll~~~~~l~~~~~ 292 (318)
|||..|..++++.....
T Consensus 542 dTR~~l~~~l~~~~~~~ 558 (569)
T PLN02820 542 DTRRVLGLCLSAALNRS 558 (569)
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 99999999998865533
No 14
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=100.00 E-value=6.4e-38 Score=312.47 Aligned_cols=221 Identities=30% Similarity=0.510 Sum_probs=179.7
Q ss_pred HhhcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHH
Q psy14493 62 QIARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138 (318)
Q Consensus 62 ~~~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~ 138 (318)
.+|.|+.++||+ ++|+.++|+ |.|+++ .|+ +++|||||||+|+||+|||||+. +++|++++.+++
T Consensus 249 ~~P~~~~~~yD~r~ii~~i~D~~~f~E~~~--~~g--~~~vtg~arl~G~pVGiian~~~--------~~~G~~~~~~a~ 316 (493)
T PF01039_consen 249 IIPDDRRRPYDMRDIIARIVDDGSFFELKP--GYG--KNIVTGFARLGGRPVGIIANNPR--------QRAGALDPDGAR 316 (493)
T ss_dssp CS-SSTTS---HHHHHHHHSGGGBEEEEST--TSS--TTEEEEEEEETTEEEEEEEE-TT--------CGGGEB-HHHHH
T ss_pred ccccccCCCCCcceeeEecccCCCceeccc--ccc--CCeEEeeeeeCCcceEEEEeccc--------cccccCChHHHH
Confidence 456778899996 799999995 999985 498 79999999999999999999998 499999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV----SDIT 214 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~----~D~v 214 (318)
|++||+++|++++||||+|+|||||.++..+|..|+.+++++++.+++.++||+|+||+|+++|||+++++. +|++
T Consensus 317 K~arfi~lcd~~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~ 396 (493)
T PF01039_consen 317 KAARFIRLCDAFNIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFV 396 (493)
T ss_dssp HHHHHHHHHHHTT--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEE
T ss_pred HHHHHHHHHHhhCCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875 4999
Q ss_pred EEEcccEEEEeChhHHHHhhhccccchH-----H--------HHHHh--cccHHHHHHcCCcceeecCccccCCCCchHH
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRAS-----D--------AAEAL--GLTADKLKSIGLINKIIKEPIAYSGGIDSSV 279 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~~-----~--------a~e~~--~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ 279 (318)
+|||+|++++|+|++++.+++++..... + .+++. ..+++.+.+.+++|.||+ |. |+|.
T Consensus 397 ~Awp~a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~-p~------~tR~ 469 (493)
T PF01039_consen 397 FAWPTAEIGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIID-PA------ETRK 469 (493)
T ss_dssp EEETT-EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESS-GG------GHHH
T ss_pred hhhhcceeeecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccC-HH------HHHH
Confidence 9999999999999999999998754211 1 11111 268999999999999999 88 9999
Q ss_pred HHHHHHHHhhccCccccccCCCCC
Q psy14493 280 LLDISFTLFCNYKIQFYVFHINHG 303 (318)
Q Consensus 280 ll~~~~~l~~~~~~~~~~~~~~h~ 303 (318)
.|...+.+...... ..+.+.|+
T Consensus 470 ~l~~~l~~~~~~~~--~~~~rkh~ 491 (493)
T PF01039_consen 470 VLIAALEMLWQKPR--FLPWRKHR 491 (493)
T ss_dssp HHHHHHHHHTTSHC--HHHCHSHH
T ss_pred HHHHHHHHHHhCcc--cccccccc
Confidence 99999998766442 23444443
No 15
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=1.7e-36 Score=280.61 Aligned_cols=214 Identities=14% Similarity=0.081 Sum_probs=177.4
Q ss_pred cCCCCHHHHHHhhcCCCCCchhh-HHhhhcc--cccc----------cccCCccCCCCcEEEEEEEEcCEEEEEEeecCC
Q psy14493 52 YSKLTPWQISQIARHPKRPYTLD-YIREIFT--DIHE----------LHGDRNYGDDLSIIGVLARINGESCMVIGHQKG 118 (318)
Q Consensus 52 ~~~ltareRi~~~~d~~~~~~~~-~i~~~~d--~~~e----------l~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~ 118 (318)
|-+||+||||+.+.|+++|.+.+ .+.. .| .|.. ......+ ++++|||+|+|||+||+|+++|++
T Consensus 54 h~rl~areRi~~L~D~gsF~E~~~~~~~-~d~l~f~~~~~Y~~~l~~~~~~t~~--~d~vVtG~g~I~G~~V~v~a~D~~ 130 (285)
T TIGR00515 54 HMRMDARERIESLLDEGSFEEFNSHLEP-KDPLKFKDSKKYKDRIAKAQKETGE--KDAVVTGKGTLYGMPIVVAVFDFA 130 (285)
T ss_pred cCcCCHHHHHHHceeCCeeEEeCCcccc-CccccCCcccchhHHHHHHhhccCC--CCcEEEEEEEECCEEEEEEEEecc
Confidence 36899999999999999988874 2222 12 1211 0111112 369999999999999999999999
Q ss_pred CCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 119 RNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 119 ~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
++||+++..+++|+.|++++|.++++|||+|+||+|++++++...+.++..++..+..++..++|+|+|++|
T Consensus 131 --------f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~g 202 (285)
T TIGR00515 131 --------FMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTD 202 (285)
T ss_pred --------ccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 599999999999999999999999999999999999999998888878888888889999889999999999
Q ss_pred CCchhhhhhhc-cccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCccccCCCCch
Q psy14493 199 EGGSGGALAIA-VSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDS 277 (318)
Q Consensus 199 ~~~ggga~~~~-~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds 277 (318)
+|+||+++.++ ++|+++|+|+|.|+++||+.....+... ..+. ..+++.+.++|+||.|++ |. |+
T Consensus 203 pt~GG~aas~a~~~D~iia~p~A~ig~aGprVie~ti~e~------lpe~-~q~ae~~~~~G~vD~iv~-~~------~~ 268 (285)
T TIGR00515 203 PTTGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREK------LPEG-FQTSEFLLEHGAIDMIVH-RP------EM 268 (285)
T ss_pred CcchHHHHHHHhCCCEEEEECCeEEEcCCHHHHHHHhcCc------cchh-cCCHHHHHhCCCCcEEEC-cH------HH
Confidence 99999988876 7999999999999999999644333211 1111 368999999999999999 66 99
Q ss_pred HHHHHHHHHHhhc
Q psy14493 278 SVLLDISFTLFCN 290 (318)
Q Consensus 278 ~~ll~~~~~l~~~ 290 (318)
+..|..+++++..
T Consensus 269 r~~l~~~L~~~~~ 281 (285)
T TIGR00515 269 KKTLASLLAKLQN 281 (285)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987644
No 16
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=100.00 E-value=1.6e-34 Score=261.36 Aligned_cols=180 Identities=21% Similarity=0.274 Sum_probs=157.1
Q ss_pred hhHHhhhcccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHH-H-hC
Q psy14493 73 LDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIA-E-KF 150 (318)
Q Consensus 73 ~~~i~~~~d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A-~-~~ 150 (318)
.++++.+||++.+++++ +++|||+|+++|+||+|++|+++. .++..++.|.++++.+| + +|
T Consensus 3 ~~~l~~l~d~~~~~e~~------~~vv~G~arl~G~~V~vIa~~~~~-----------~~g~~~~~k~A~~v~~~~d~~f 65 (238)
T TIGR03134 3 RDWLAALFPNGHEVAGD------PGVLVGSAELAGGKVTVIGVVPDA-----------EVGLDEALALAQAVLDVIEADD 65 (238)
T ss_pred HHHHHHHcCCCcEEecC------CcEEEEEEEECCEEEEEEEECCCC-----------cCChHHHHHHHHHHHHHHHhcC
Confidence 36889999987777643 389999999999999999999872 56667888888888774 5 49
Q ss_pred CCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCC---CCEEEEEcCCCchhhhhhhcc-ccEEEEEcccEEEEeC
Q psy14493 151 NLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLK---VPLISTIIGEGGSGGALAIAV-SDITLMLQYAIYSVIS 226 (318)
Q Consensus 151 ~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~---vP~IavV~G~~~ggga~~~~~-~D~via~~~A~i~v~g 226 (318)
++|||+|+||||++++.++|..|+.+++++++.+++.++ ||+|+||+|+++|||++++++ +|+++|||++++++|+
T Consensus 66 ~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~vm~ 145 (238)
T TIGR03134 66 KRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHVMD 145 (238)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEecC
Confidence 999999999999999999999999999997777776555 999999999999999999985 9999999999999999
Q ss_pred hhHHHHhhhccccchHHHHHHh---cccHHHHHHcCCcceeecCcc
Q psy14493 227 PEGCASILWKTSKRASDAAEAL---GLTADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 227 P~~~a~il~~~~~~~~~a~e~~---~~~a~~a~~~G~vD~ii~~p~ 269 (318)
|+++++|+|++....+++++.+ ..+++++.++|+||+||++|.
T Consensus 146 ~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 146 LESMARVTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHHHHHHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 9999999999987777776654 468899999999999999653
No 17
>KOG0540|consensus
Probab=100.00 E-value=2.5e-35 Score=278.81 Aligned_cols=218 Identities=22% Similarity=0.333 Sum_probs=190.2
Q ss_pred hcCCCCCchh-hHHhhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHH
Q psy14493 64 ARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKA 140 (318)
Q Consensus 64 ~~d~~~~~~~-~~i~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~ 140 (318)
+.+-..+|++ ++|.+++|+ |.|+.. .|+ +++||||||++|++|++++|||. +.||+++.+.+.|.
T Consensus 306 ~~~~~~~yd~r~vi~~iVD~~~f~E~~~--~y~--~tlvtGfarlnG~tVgIvgnn~k--------f~~G~L~s~sa~Kg 373 (536)
T KOG0540|consen 306 PLNLTKAYDVREVIARIVDGSRFFEFKP--GYG--DTLVTGFARLNGRTVGIVGNNPK--------FAGGVLFSESAVKG 373 (536)
T ss_pred ccccccccchHhHHHhhcccchhhhhcc--ccc--cceeeeeeeECCEEEEEeccCch--------hcccccchhhhhhh
Confidence 4445578884 799999995 889984 499 59999999999999999999998 69999999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc----cccEEEE
Q psy14493 141 VRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDITLM 216 (318)
Q Consensus 141 ~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~----~~D~via 216 (318)
+||+++|.+++||||+|+|++|+.++..+|..|++++.++++.+.++++||+|++++|+++| |.|.|+ ++|+++|
T Consensus 374 arfIe~c~q~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~m~sr~~~gd~~ya 452 (536)
T KOG0540|consen 374 ARFIELCDQRNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYAMCSRGYSGDINYA 452 (536)
T ss_pred HHHHHHHHhcCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-CcccccccccCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 888765 4899999
Q ss_pred EcccEEEEeChhHHHHhhhccccc-hHH----HHHHhcccHHHHHHcCCcceeecCccccCCCCchHHHHHHHHHHhhcc
Q psy14493 217 LQYAIYSVISPEGCASILWKTSKR-ASD----AAEALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCNY 291 (318)
Q Consensus 217 ~~~A~i~v~gP~~~a~il~~~~~~-~~~----a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~ 291 (318)
||+|+|+|||.++++.++.....+ +.. ..|.+ .+|+.+..+||+|.||+ |. |+|..|...+.+...+
T Consensus 453 wP~A~IavmG~~~a~~Vi~q~~~e~a~~~~~~~~E~f-~npy~a~~Rg~~D~II~-p~------~tR~vl~~~l~~~~~~ 524 (536)
T KOG0540|consen 453 WPNARIAVMGGKQAANVIFQITLEKAVALKAPYIEKF-GNPYYAAARGWDDGIID-PS------DTRKVLGLDLQAAANK 524 (536)
T ss_pred cccceeeeccccchhhhhhhhhhhhhhhhcchHHHHh-cCccHHHHhhccccccC-hh------HhhHHHHHHHHHHhcC
Confidence 999999999999999999876322 111 22333 68999999999999999 88 9999999999888776
Q ss_pred CccccccCCCCCCCC
Q psy14493 292 KIQFYVFHINHGLSP 306 (318)
Q Consensus 292 ~~~~~~~~~~h~~~~ 306 (318)
+++- .+||+.+
T Consensus 525 pl~~----~k~g~~~ 535 (536)
T KOG0540|consen 525 PLQT----TKFGVFR 535 (536)
T ss_pred CCcc----ccccccc
Confidence 6542 6777654
No 18
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=100.00 E-value=5.9e-34 Score=284.04 Aligned_cols=222 Identities=18% Similarity=0.184 Sum_probs=176.5
Q ss_pred HHHHHHhhhhhcCCCcH-HHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhH-HhhhcccccccccCCccCCC
Q psy14493 18 KIEKLRSLQFSSNIDTS-KEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDY-IREIFTDIHELHGDRNYGDD 95 (318)
Q Consensus 18 ~~~~l~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~-i~~~~d~~~el~~~~~~~d~ 95 (318)
.+++|+++++....+++ ++++|||++ |+||+||||+.++|+++|.+++- ...--..|. ......++
T Consensus 2 ~~~~l~~~~~~~~~~g~~~~~~r~~~~---------g~l~areRi~~LlD~gsF~E~~~~~~~~~~~~~-~~~~~~~~-- 69 (512)
T TIGR01117 2 KIEELHEKKEKIKQGGGEKRIEKQHAQ---------GKMTARERLALLFDPGSFVEIDQFVKHRCTNFG-MDKKELPA-- 69 (512)
T ss_pred hHHHHHHHHHHHHhcCChhhHHhHHhc---------CCCCHHHHHHHhcCCCcEEEecCccccCCCCcc-ccccCCCC--
Confidence 45677777776555554 489999999 99999999999999999877642 211000111 11112234
Q ss_pred CcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchH
Q psy14493 96 LSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQS 175 (318)
Q Consensus 96 ~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~ 175 (318)
+++|||+|+|||++|+|+++|++ ++||+++..+++|+.|++++|.+.++|+|.|+||+|++++++...+.++
T Consensus 70 dgvVtG~G~v~Gr~v~v~a~D~t--------~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~eg~~~l~~~ 141 (512)
T TIGR01117 70 EGVVTGYGTIDGRLVYAFAQDFT--------VMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQEAVDALKGY 141 (512)
T ss_pred ceEEEEEEEECCEEEEEEEECCc--------ccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCccccchhhhhH
Confidence 69999999999999999999999 5999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHHHHHHhcccHHH
Q psy14493 176 EAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASDAAEALGLTADK 254 (318)
Q Consensus 176 ~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~ 254 (318)
.+++..+..+++. +|+|++|+|+|+||++|.+++||++||+++ ++++++||......+-.. ...++ +...+
T Consensus 142 ~~~~~~~~~~s~~-iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP~vv~~~~Ge~-v~~e~------lGGa~ 213 (512)
T TIGR01117 142 GDIFYRNTIASGV-VPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGPQVIKTVTGEE-VTAEQ------LGGAM 213 (512)
T ss_pred HHHHHHHHHHcCC-CcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecChHHHHhhcCcc-cchhh------cchHH
Confidence 8888877777775 999999999999999999999999999997 789999999765544322 12222 22222
Q ss_pred H--HHcCCcceeecC
Q psy14493 255 L--KSIGLINKIIKE 267 (318)
Q Consensus 255 a--~~~G~vD~ii~~ 267 (318)
. ...|.+|-+.+.
T Consensus 214 ~h~~~sGv~d~~~~d 228 (512)
T TIGR01117 214 AHNSVSGVAHFIAED 228 (512)
T ss_pred HhccccceeEEecCC
Confidence 2 358999998873
No 19
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=100.00 E-value=5.1e-33 Score=255.51 Aligned_cols=220 Identities=13% Similarity=0.034 Sum_probs=169.7
Q ss_pred hcCCCCHHHHHHhhcCCCCCchh-hHHhhhcccccc-cccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhcc
Q psy14493 51 IYSKLTPWQISQIARHPKRPYTL-DYIREIFTDIHE-LHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRN 128 (318)
Q Consensus 51 ~~~~ltareRi~~~~d~~~~~~~-~~i~~~~d~~~e-l~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~ 128 (318)
.|-.||+||||+.++|+++|.+. +-+........+ +.-...+ ++++|+|+|+|||+||+|+++|++ ++
T Consensus 2 s~~~ltAReRi~~LlD~gSF~E~~g~~~~~~~~~l~~~~~~~~~--~dgvV~G~G~I~Gr~v~v~a~D~t--------~~ 71 (274)
T TIGR03133 2 SFYEANARERARGLLDAGSFRELLGPFDRVISPHLPRQGIVPQF--DDGVVVGRGTIDGKPVVVAAQEGR--------FQ 71 (274)
T ss_pred CcccCCHHHHHHHhcCCCcceEcccccccccCcchhhhcccCCC--CCeEEEEEEEECCEEEEEEEECCC--------cc
Confidence 47889999999999999998776 322221111111 1111112 369999999999999999999999 59
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-----CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC--Cc
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-----FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE--GG 201 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-----~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~--~~ 201 (318)
||++++.+.+|+.|++++|.+ .++|+|.|+||+|++++++...+.++..+++.+..+++. ||+|++|+|+ |+
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~-vP~Isvv~Gp~gc~ 150 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAA-VPVIGVIGGRVGCF 150 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCC-CCEEEEEeCCCCcc
Confidence 999999999999999999988 668999999999999998888777778899999999998 9999999999 89
Q ss_pred hhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccchHHHH-HHhcccHHHHHHcCCcceeecCccccCCCCchHHH
Q psy14493 202 SGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAA-EALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVL 280 (318)
Q Consensus 202 ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~-e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~l 280 (318)
||++|.+++||++||+++++|++.||+......-..+...++.+ -...+........|++|.+++ . |..++
T Consensus 151 GG~a~~a~l~D~vim~~~a~i~~aGP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~sG~~D~~v~--d------d~~a~ 222 (274)
T TIGR03133 151 GGMGIAAGLCSYLIMTEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHRFLSGDADVLVE--D------DVDAF 222 (274)
T ss_pred hHHHHHHhcCCEEEEeCCcEEeccCHHHHHHhcCCCccCHHHhcccccccchHhHhhcccceEEeC--C------HHHHH
Confidence 99999999999999999999999999976654433222222211 011134556777999999997 2 44444
Q ss_pred HHHHHHHhh
Q psy14493 281 LDISFTLFC 289 (318)
Q Consensus 281 l~~~~~l~~ 289 (318)
-..+..++.
T Consensus 223 ~~~~~~~l~ 231 (274)
T TIGR03133 223 RAAVIAALA 231 (274)
T ss_pred HHHHHHHHh
Confidence 444444443
No 20
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=100.00 E-value=9.2e-33 Score=254.99 Aligned_cols=213 Identities=17% Similarity=0.119 Sum_probs=171.9
Q ss_pred cCCCCHHHHHHhhcCCCCCchhhH-Hhhh-cccccc--------c---ccCCccCCCCcEEEEEEEEcCEEEEEEeecCC
Q psy14493 52 YSKLTPWQISQIARHPKRPYTLDY-IREI-FTDIHE--------L---HGDRNYGDDLSIIGVLARINGESCMVIGHQKG 118 (318)
Q Consensus 52 ~~~ltareRi~~~~d~~~~~~~~~-i~~~-~d~~~e--------l---~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~ 118 (318)
|-+||+||||+.+.|+++|.+++- +... ...|.. + ...... ++++|||+|+|||++|+|+++|++
T Consensus 66 h~rltAreRI~~L~D~gSF~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~--~dgVVtG~G~I~Gr~v~v~a~Dft 143 (296)
T CHL00174 66 HLKMSSSDRIELLIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGL--TDAVQTGIGQLNGIPVALGVMDFQ 143 (296)
T ss_pred CcCCCHHHHHHHHccCCccEEcCCccCcCCCccccccccchHHHHHHHHhccCC--CccEEEEEEEECCEEEEEEEECCc
Confidence 468999999999999999988752 3221 111210 0 011112 369999999999999999999999
Q ss_pred CCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHh-cCCCCEEEEEc
Q psy14493 119 RNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMS-KLKVPLISTII 197 (318)
Q Consensus 119 ~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s-~~~vP~IavV~ 197 (318)
++||+++....+|+.|++++|.+.++|+|.|+||+|+|++++...+.++..+...+..+. ..++|+|++++
T Consensus 144 --------f~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~ 215 (296)
T CHL00174 144 --------FMGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILT 215 (296)
T ss_pred --------ccccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEc
Confidence 599999999999999999999999999999999999999999888888777654444433 44699999999
Q ss_pred CCCchhhhhhhcc-ccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCccccCCCCc
Q psy14493 198 GEGGSGGALAIAV-SDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGID 276 (318)
Q Consensus 198 G~~~ggga~~~~~-~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~d 276 (318)
|||+||+++.+++ +|+++|.|+|.|+++||+.....+..+.. ++ .++++.+.++|+||.|++.. +
T Consensus 216 gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrVIe~t~ge~lp--e~-----fq~ae~l~~~G~vD~iV~r~-------~ 281 (296)
T CHL00174 216 SPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVP--EG-----SQAAEYLFDKGLFDLIVPRN-------L 281 (296)
T ss_pred CCCchHHHHHHHHcccEEEEeCCeEEEeeCHHHHHHhcCCcCC--cc-----cccHHHHHhCcCceEEEcHH-------H
Confidence 9999999999775 99999988999999999976655532211 11 36899999999999999955 7
Q ss_pred hHHHHHHHHHHh
Q psy14493 277 SSVLLDISFTLF 288 (318)
Q Consensus 277 s~~ll~~~~~l~ 288 (318)
.+..|..+++++
T Consensus 282 lr~~l~~ll~~~ 293 (296)
T CHL00174 282 LKGVLSELFQLH 293 (296)
T ss_pred HHHHHHHHHHhh
Confidence 888888888775
No 21
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=100.00 E-value=9.7e-33 Score=256.24 Aligned_cols=209 Identities=12% Similarity=0.062 Sum_probs=162.2
Q ss_pred hhhhhcCCCCHHHHHHhhcCCCCCchh-hHHhhh-cccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccch
Q psy14493 47 LTEEIYSKLTPWQISQIARHPKRPYTL-DYIREI-FTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNER 124 (318)
Q Consensus 47 ~~~~~~~~ltareRi~~~~d~~~~~~~-~~i~~~-~d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~ 124 (318)
+.+..|..|||||||+.++|+++|.++ +-.... +..+........++ +++|+|+|+|||+||+|+++|++
T Consensus 7 ~~~~s~~~ltARERi~~LlD~gSF~E~~g~~~~~~~~~~~~~~~~~~~~--dGvV~G~G~I~Gr~v~v~a~D~t------ 78 (301)
T PRK07189 7 LADRSFIEASARERAAALLDAGSFRELLGPFERVMSPHLPLQGIPPQFD--DGVVVGKGTLDGRPVVVAAQEGR------ 78 (301)
T ss_pred hhhCCceeCCHHHHHHHhcCCCcceEcccccccccCcchhhhccCCCCC--CcEEEEEEEECCEEEEEEEECCC------
Confidence 345678999999999999999998886 433222 11111111111233 69999999999999999999999
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHhCC-----CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 125 IIRNFGMAKPEGYRKAVRLMHIAEKFN-----LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 125 ~~~~gG~~~~~~~~K~~r~~~~A~~~~-----lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++||++++.+.+|+.|++++|.+.+ +|+|.|+||+|++++++...+.++..+++.+..+++. ||+|++|.|+
T Consensus 79 --f~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~-VP~I~vv~G~ 155 (301)
T PRK07189 79 --FMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAA-VPVIGLIGGR 155 (301)
T ss_pred --ccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCC
Confidence 5999999999999999999999999 9999999999999998877777778899999999998 9999999999
Q ss_pred --CchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhccccchHHHH-HHhcccHHHHHHcCCcceeec
Q psy14493 200 --GGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAA-EALGLTADKLKSIGLINKIIK 266 (318)
Q Consensus 200 --~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~-e~~~~~a~~a~~~G~vD~ii~ 266 (318)
|+||++|.+++||++||+++++|++.||+......-......++.. -..-.........|.+|.+++
T Consensus 156 ~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~VIe~~~G~e~~d~~d~~~vw~~lGG~h~~~sG~~D~~v~ 225 (301)
T PRK07189 156 VGCFGGMGIAAALCSYLIVSEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHRYLSGLADALVD 225 (301)
T ss_pred CCCcHHHHHHHhcCCEEEEECCcEEeccCHHHHHHhcCCcccCHHHhcccccccCcceeeecccceEEeC
Confidence 9999999999999999999999999999975543322112222200 000012223344788888876
No 22
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=100.00 E-value=2.3e-34 Score=237.03 Aligned_cols=145 Identities=57% Similarity=0.959 Sum_probs=108.2
Q ss_pred cccchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhcccc
Q psy14493 4 IFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDI 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~~ 83 (318)
++||||++|.+++.+|++|+........+..++|++++++++++++++|.+||||||+.+.++|+||+..+||..+|++|
T Consensus 1 ~~LdfEk~I~ele~kI~eL~~~~~~~~~d~~~ei~~Le~k~~~l~~eiy~~lt~w~~V~~aRhp~Rp~~~dyI~~l~~df 80 (145)
T PF03255_consen 1 MYLDFEKPIKELEEKIEELKKLAEEGGIDLSDEIASLEEKLEKLRKEIYSNLTPWQRVQLARHPDRPTALDYIENLFDDF 80 (145)
T ss_dssp ---CCCHHHHHCCCCCC--------------TCHHHHHHHHHCCCCHHHHT--HHHHHHHHTBTTS--HHHHHHHH-EEE
T ss_pred CCCchhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhhCCCCCCHHHHHHHHhCcC
Confidence 48999999999999999998877655556666899999999999999999999999999999999999999999999999
Q ss_pred cccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHH
Q psy14493 84 HELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAE 148 (318)
Q Consensus 84 ~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~ 148 (318)
.|++||+.|+||+++|+|+|+++|+||+|++++++.++++++.+|+|+..|++|+|+.|++++|+
T Consensus 81 ~ElhGDR~~~dD~AivgG~a~~~g~~V~vig~~KG~~~~e~~~rNFGm~~PeGYRKAlRlmk~Ae 145 (145)
T PF03255_consen 81 IELHGDRLFGDDPAIVGGIARFDGQPVTVIGQQKGRDTKENIKRNFGMPHPEGYRKALRLMKQAE 145 (145)
T ss_dssp EE----SSS---TTEEEEEEEETTEEEEEEEE---SSCCHHHHTGGG---HHHHHHHHHHHHHHH
T ss_pred eEecCCccCCcCccceeeeEEECCEEEEEEEEecCcCHHHHHHHcCCCCCcchHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999985
No 23
>KOG0540|consensus
Probab=99.98 E-value=1.5e-32 Score=259.96 Aligned_cols=197 Identities=26% Similarity=0.354 Sum_probs=171.0
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhhHHhhhccccc
Q psy14493 6 LNFEEPIIKLEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIH 84 (318)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~~i~~~~d~~~ 84 (318)
-+|.++-.+++..+++++ ....++|++ +++++|++ |||++||||++++||++| |-++.
T Consensus 26 ~~~~s~a~~~k~~i~~~R---~~~l~ggg~k~vd~~~sr---------gkl~arerIdlLld~gs~---------Fie~d 84 (536)
T KOG0540|consen 26 KAMDSNAPGMKTLISQLR---FKALLGGGEKAVDAHHSR---------GKLLARERIDLLLDPGSP---------FIELD 84 (536)
T ss_pred HHHHhccHHhhhHHHHHH---HHHHccCChhhhhhhhhh---------cccchhhhhhhccCCCCc---------ceehh
Confidence 346677778888888886 455666766 89999999 999999999999999997 33332
Q ss_pred ccccCCccCC----CCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 85 ELHGDRNYGD----DLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 85 el~~~~~~~d----~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
.+.+..+|++ ..++|||.|+|+||.|.|++||+++ +||+.++.+.+|.+|.++.|...++|+|+|+||
T Consensus 85 ~fa~h~m~~~e~~ps~sIvtg~g~i~gr~~~vianDfTv--------~ggs~y~i~~kk~lr~~e~a~~~~~p~iyL~DS 156 (536)
T KOG0540|consen 85 QFAGHEMYGKEKVPSGSIVTGRGRINGRKCFVIANDFTV--------KGGSYYPITVKKHLRAQEIADNNRLPCIYLVDS 156 (536)
T ss_pred hhhhhhhccccCCCCCceEeccccccceEEEEEccCchh--------cccccchhhHHHHhhHHHHHhhcCCCceeEecC
Confidence 2333233322 2699999999999999999999995 999999999999999999999999999999999
Q ss_pred CCCCCchhHHhhch---HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHH
Q psy14493 161 PGAFPGIDAEERGQ---SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCA 231 (318)
Q Consensus 161 ~Ga~~~~~~e~~g~---~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a 231 (318)
+|+++++++|.+.. ++.++.+..-|+.-.+|+|++|+|+|++||+|.++++|+++|+++ +.+++.||....
T Consensus 157 gga~l~~~~es~~d~~~~~~If~n~n~mss~~ipqis~Img~Ct~gg~y~pAm~d~~~~vk~~s~lfl~gp~lVk 231 (536)
T KOG0540|consen 157 GGARLPRQAESFADSYHFGRIFYNQNVMSSGNIPQISVIMGSCTAGGAYVPAMADETIMVKDTSTLFLAGPPLVK 231 (536)
T ss_pred ccccCcchhhhcCChhhhheeeeecceeccCCCCceeEEEecccCCceecccccceeEEecCcceEEecCCchhh
Confidence 99999999999876 788999888888888999999999999999999999999999998 999999997543
No 24
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=99.97 E-value=8.5e-31 Score=261.36 Aligned_cols=199 Identities=20% Similarity=0.200 Sum_probs=165.8
Q ss_pred HHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchhh-HHhhhcccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecC
Q psy14493 39 DLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLD-YIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQK 117 (318)
Q Consensus 39 ~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~~-~i~~~~d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~ 117 (318)
|||++ ||||+||||+.++||++|.+.+ +...-...+.. ...++ +++|||+|+|||++|+|+++|+
T Consensus 1 ~~~~~---------Gk~~areRi~~L~D~gSF~E~~~~~~~~~~~~~~---~~~p~--~gvvtG~G~I~G~~v~v~a~D~ 66 (493)
T PF01039_consen 1 KQHAR---------GKLTARERIDLLLDPGSFRELGDLAGAARYKFGR---EKTPG--DGVVTGIGKINGRPVVVIAQDF 66 (493)
T ss_dssp HHHHT---------TEEEHHHHHHHHSGTTEBEEESTTHHTTHCGGGG---GH-TT--TTEEEEEEEETTEEEEEEEEET
T ss_pred Ccccc---------CCcCHHHHHHHhcCCCCCcCchHHHhcccccccc---ccCCC--CcEEEEEEeeCCeeEEEEEecc
Confidence 68899 9999999999999999987763 22221111110 11244 6999999999999999999999
Q ss_pred CCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--CCchhHHhhchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 118 GRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGA--FPGIDAEERGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 118 ~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga--~~~~~~e~~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
+ ++||++++.+++|+.|++++|.+.++|+|.|+||+|+ +++++.+.+.+++.++..+..+++ .+|+|++
T Consensus 67 t--------~~gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~-~iP~I~v 137 (493)
T PF01039_consen 67 T--------VLGGSVGEVHGEKIARAIELALENGLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSG-GIPQISV 137 (493)
T ss_dssp T--------SGGGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHT-TS-EEEE
T ss_pred c--------eecCCCCcccceeeehHHHHHHHcCCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhc-CCCeEEE
Confidence 9 5999999999999999999999999999999999999 889999988888999999999999 7999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcc-cEEEEeChhHHHHhhhccccchHHHHHHhcccH-HHHHHcCCcceeec
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQY-AIYSVISPEGCASILWKTSKRASDAAEALGLTA-DKLKSIGLINKIIK 266 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~-A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a-~~a~~~G~vD~ii~ 266 (318)
|+|+|+||++|.+++||++||+++ ++|++.||......+. .....++. ..+ ......|.+|.+++
T Consensus 138 v~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP~vv~~~~G-e~~~~~~l-----gG~~~h~~~sG~~d~v~~ 204 (493)
T PF01039_consen 138 VTGPCTGGGAYLAALSDFVIMVKGTARIFLAGPRVVESATG-EEVDSEEL-----GGADVHAAKSGVVDYVVD 204 (493)
T ss_dssp EESEEEGGGGHHHHHSSEEEEETTTCEEESSTHHHHHHHHS-SCTSHHHH-----HBHHHHHHTSSSSSEEES
T ss_pred EccccccchhhcccccCccccCccceEEEeccccccccccC-ccccchhh-----hhhhhhcccCCCceEEEe
Confidence 999999999999999999999998 9999999998766665 22222221 233 33568999999997
No 25
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=99.95 E-value=3.6e-27 Score=212.16 Aligned_cols=216 Identities=17% Similarity=0.143 Sum_probs=175.1
Q ss_pred CCCCHHHHHHhhcCCCCCchhh--HH--hhh-ccc---ccc-ccc-CCccCCCCcEEEEEEEEcCEEEEEEeecCCCCcc
Q psy14493 53 SKLTPWQISQIARHPKRPYTLD--YI--REI-FTD---IHE-LHG-DRNYGDDLSIIGVLARINGESCMVIGHQKGRNVN 122 (318)
Q Consensus 53 ~~ltareRi~~~~d~~~~~~~~--~i--~~~-~d~---~~e-l~~-~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~ 122 (318)
-+++|+||+..+.|++++.+.+ +. +.+ |.+ +.+ +.. ....+.+++||+|.|+|+|.||++.+.|+.
T Consensus 57 ~ri~A~~Ri~~llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg~g~i~G~pvv~av~df~---- 132 (294)
T COG0777 57 MRISARERLEALLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTINGLPVVLAVMDFA---- 132 (294)
T ss_pred cccCHHHHHHHhhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEEeeEECCeEEEEEEEecc----
Confidence 5799999999999999987752 11 111 111 100 110 011234589999999999999999999999
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCch
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGS 202 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~g 202 (318)
|+|||+|....+|++|+++.|.+.++|+|.|..|+|+|++++.-.+.|+..+...+..++.++.|+|+|+..|.+|
T Consensus 133 ----FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtG 208 (294)
T COG0777 133 ----FMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTG 208 (294)
T ss_pred ----ccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCcc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhc-cccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHhcccHHHHHHcCCcceeecCccccCCCCchHHHH
Q psy14493 203 GGALAIA-VSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLL 281 (318)
Q Consensus 203 gga~~~~-~~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll 281 (318)
|-....+ ++|++++.|+|.|+++||+.....+..+. .+ - .++++++.++|+||.|++.. |.+.-|
T Consensus 209 GVsASfA~lGDi~iAEP~AlIGFAGpRVIEQTire~L---Pe---g-fQ~aEfLlehG~iD~iv~R~-------elr~tl 274 (294)
T COG0777 209 GVSASFAMLGDIIIAEPGALIGFAGPRVIEQTIREKL---PE---G-FQTAEFLLEHGMIDMIVHRD-------ELRTTL 274 (294)
T ss_pred chhHhHHhccCeeecCcccccccCcchhhhhhhcccC---Cc---c-hhhHHHHHHcCCceeeecHH-------HHHHHH
Confidence 8544433 58999999999999999997554443221 11 1 36899999999999999964 788888
Q ss_pred HHHHHHhhc
Q psy14493 282 DISFTLFCN 290 (318)
Q Consensus 282 ~~~~~l~~~ 290 (318)
..++.++..
T Consensus 275 a~ll~~~~~ 283 (294)
T COG0777 275 ASLLAKLTP 283 (294)
T ss_pred HHHHHHhCC
Confidence 877776654
No 26
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.68 E-value=5.8e-16 Score=138.53 Aligned_cols=160 Identities=16% Similarity=0.227 Sum_probs=137.4
Q ss_pred CcEEEEEEEE-cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHH--HHhCCCcEEEEecCCCCCCchhHHhh
Q psy14493 96 LSIIGVLARI-NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHI--AEKFNLPIFTFIDTPGAFPGIDAEER 172 (318)
Q Consensus 96 ~~vVtG~g~i-~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~--A~~~~lPiV~lvDs~Ga~~~~~~e~~ 172 (318)
..++.|-+.. +++.+.||.+.. .|.+|-..+-+.++.+.- ....+.|||.++||+|..++...|.+
T Consensus 17 ~~v~~g~~~~~~~~~iaVvg~~~-----------~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEll 85 (234)
T PF06833_consen 17 VQVLDGEAGGEDGRFIAVVGDAN-----------HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELL 85 (234)
T ss_pred cceEEeeccccCCcEEEEEecCC-----------CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHh
Confidence 5799999888 899999999874 488888888787777643 34578999999999999999999999
Q ss_pred chHH---HHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc-ccEEEEEcccEEEEeChhHHHHhhhccccchHHHHHHh
Q psy14493 173 GQSE---AIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV-SDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEAL 248 (318)
Q Consensus 173 g~~~---~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~-~D~via~~~A~i~v~gP~~~a~il~~~~~~~~~a~e~~ 248 (318)
|+.. +.+.+.......+.|+|++|.|++.+||+++.++ +|.+++.+++.+.+|+.++++.|..++.+..+++++..
T Consensus 86 Gi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i~vM~~~s~ARVTk~~ve~Le~la~s~ 165 (234)
T PF06833_consen 86 GINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMIHVMGKPSAARVTKRPVEELEELAKSV 165 (234)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCCCeeecCChHHhHHHhhcCHHHHHHHhhcC
Confidence 9854 5566666666778999999999999999999875 99999999999999999999999998877777776653
Q ss_pred ---cccHHHHHHcCCcceeec
Q psy14493 249 ---GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 ---~~~a~~a~~~G~vD~ii~ 266 (318)
..+..+..++|.++++++
T Consensus 166 PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 166 PVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred CCcCCCHHHHHHhccHHHHhc
Confidence 468999999999999997
No 27
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.13 E-value=6.9e-10 Score=97.61 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=91.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEc---CCCchhh
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTII---GEGGSGG 204 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~---G~~~ggg 204 (318)
.|.+++.....+.+.++.|.+.+ -+|+..+||||..+.... ..+.++..+++|+|+.|. |.|+|||
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpGG~v~~~~----------~i~~~l~~~~kPvia~v~~~~G~AasgG 76 (187)
T cd07020 7 NGAITPATADYLERAIDQAEEGGADALIIELDTPGGLLDSTR----------EIVQAILASPVPVVVYVYPSGARAASAG 76 (187)
T ss_pred eeEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCCCCHHHHH----------HHHHHHHhCCCCEEEEEecCCCCchhHH
Confidence 36667777888999998887766 557888899996544332 223344556899999999 9999999
Q ss_pred hhhhccccEEEEEcccEEEEeChhHHH--------------------Hhhhccccch--HHHHHHh----cccHHHHHHc
Q psy14493 205 ALAIAVSDITLMLQYAIYSVISPEGCA--------------------SILWKTSKRA--SDAAEAL----GLTADKLKSI 258 (318)
Q Consensus 205 a~~~~~~D~via~~~A~i~v~gP~~~a--------------------~il~~~~~~~--~~a~e~~----~~~a~~a~~~ 258 (318)
++....||+++|.|+++++..+|.... ...+.+..+. +.+.+.+ .+++.+|++.
T Consensus 77 ~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~ 156 (187)
T cd07020 77 TYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKL 156 (187)
T ss_pred HHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHc
Confidence 999989999999999999986664210 0011111111 2233322 4799999999
Q ss_pred CCcceeec
Q psy14493 259 GLINKIIK 266 (318)
Q Consensus 259 G~vD~ii~ 266 (318)
|+||++++
T Consensus 157 Glvd~v~~ 164 (187)
T cd07020 157 GVIDLIAA 164 (187)
T ss_pred CCcccccC
Confidence 99999996
No 28
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=2.3e-09 Score=98.11 Aligned_cols=139 Identities=16% Similarity=0.112 Sum_probs=99.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCC-----CCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCch
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPG-----AFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGS 202 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~G-----a~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~g 202 (318)
...+++......+.++++.+++..+-+|.|.-.+. ..+..............+.+..+...++|+|++|.|.|.|
T Consensus 20 ~~Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~G 99 (243)
T PRK07854 20 RRNALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIG 99 (243)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Confidence 44689999999999999887766777777765332 3332111001111233445666778899999999999999
Q ss_pred hhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 203 GGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 203 gga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
||......||++||.++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||+|.+
T Consensus 100 gG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 100 AGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred cHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccC
Confidence 9999998999999999998876 345555554455555555555554 489999999999999964
No 29
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.11 E-value=1.8e-09 Score=98.65 Aligned_cols=153 Identities=17% Similarity=0.213 Sum_probs=109.1
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCC-chhHH---------hhc
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFP-GIDAE---------ERG 173 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~-~~~~e---------~~g 173 (318)
+++.-..+.-|++. ...+++....+.+..+++.+++.. +-+|.+.-+++++. |.... ...
T Consensus 4 ~~~~v~~i~ln~p~---------~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~ 74 (245)
T PF00378_consen 4 IEDGVATITLNRPE---------KRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEARE 74 (245)
T ss_dssp EETTEEEEEEECGG---------GTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHH
T ss_pred EECCEEEEEECCCC---------CCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccc
Confidence 34444445555553 457899999999999998887654 45777766665554 22111 112
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHH
Q psy14493 174 QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEA 247 (318)
Q Consensus 174 ~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~ 247 (318)
........+..+..+++|+|++|.|.|+|||+..+..||++|+.+++.|++ +.|..+....+.+..+...+.+.
T Consensus 75 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l 154 (245)
T PF00378_consen 75 FFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRAREL 154 (245)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccc
Confidence 235667778888889999999999999999999988899999999998776 34544444444444444344444
Q ss_pred h----cccHHHHHHcCCcceeec
Q psy14493 248 L----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 248 ~----~~~a~~a~~~G~vD~ii~ 266 (318)
+ .+++.++.+.|+||++++
T Consensus 155 ~l~g~~~~a~eA~~~Glv~~v~~ 177 (245)
T PF00378_consen 155 LLTGEPISAEEALELGLVDEVVP 177 (245)
T ss_dssp HHHTCEEEHHHHHHTTSSSEEES
T ss_pred ccccccchhHHHHhhcceeEEcC
Confidence 3 589999999999999997
No 30
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=9.8e-09 Score=94.58 Aligned_cols=138 Identities=13% Similarity=0.107 Sum_probs=98.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHhh---------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEER---------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~~---------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
..-+++......+.++++.++ ..+-+|.|.-.+.++. |.....+ .........+..+..+++|+|++|.
T Consensus 22 ~~Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 100 (255)
T PRK08150 22 KRNALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH 100 (255)
T ss_pred cccCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 346899999999999998877 6677777765443222 1111111 1112233445567788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|||...+..||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 101 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 179 (255)
T PRK08150 101 GAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVP 179 (255)
T ss_pred CEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeC
Confidence 999999999998899999999998877 235554555555555554555543 589999999999999997
No 31
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.04 E-value=1.2e-08 Score=93.99 Aligned_cols=138 Identities=18% Similarity=0.197 Sum_probs=96.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHhhc-----------hHHH-HHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEERG-----------QSEA-IGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~~g-----------~~~~-~~~~~~~~s~~~vP~Iav 195 (318)
-.+++......+.++++.+++..+-+|.|.-.+.++. |....... .... ....+..+..+++|+|++
T Consensus 20 ~Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 99 (256)
T TIGR02280 20 LNSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA 99 (256)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3678999999999999988766566677765443332 11111100 0111 122345677889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|+|||...+..||++||.+++.|++ +.|..+.....+...+...+.+.+ .+++.++.+.|+||+++
T Consensus 100 v~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 179 (256)
T TIGR02280 100 VNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVV 179 (256)
T ss_pred ECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceee
Confidence 99999999999998999999999998875 235544444445545544454443 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 180 ~ 180 (256)
T TIGR02280 180 D 180 (256)
T ss_pred C
Confidence 6
No 32
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.04 E-value=1.1e-08 Score=94.92 Aligned_cols=139 Identities=16% Similarity=0.197 Sum_probs=99.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh----------------c----hHHHHHHHHHHH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER----------------G----QSEAIGHSIYVM 185 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~----------------g----~~~~~~~~~~~~ 185 (318)
...+++....+.+.++++.+++ ..+.+|.|.-.+.++. |.....+ . ......+.+..+
T Consensus 26 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 105 (272)
T PRK06142 26 KGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAV 105 (272)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 4578999999999999988765 4578888876553332 2111110 0 011223344556
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHH
Q psy14493 186 SKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKL 255 (318)
Q Consensus 186 s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a 255 (318)
..+++|+|++|.|.|.|||......||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++
T Consensus 106 ~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA 185 (272)
T PRK06142 106 ADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEA 185 (272)
T ss_pred HhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHH
Confidence 778999999999999999999998999999999998876 345555544555545545555543 5899999
Q ss_pred HHcCCcceeec
Q psy14493 256 KSIGLINKIIK 266 (318)
Q Consensus 256 ~~~G~vD~ii~ 266 (318)
.+.|+||+|++
T Consensus 186 ~~~GLv~~vv~ 196 (272)
T PRK06142 186 EKIGLVNRVYD 196 (272)
T ss_pred HHcCCccEecC
Confidence 99999999997
No 33
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.04 E-value=1.1e-08 Score=94.59 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=96.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHhh-----------c-hHH-HHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEER-----------G-QSE-AIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~~-----------g-~~~-~~~~~~~~~s~~~vP~I 193 (318)
...+++......+..+++.++...+.+|.|.-++.++. |.....+ . ... .....+..+..+++|+|
T Consensus 24 ~~Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 103 (262)
T PRK08140 24 KLNSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVI 103 (262)
T ss_pred ccCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 34688999999999999887755577777765443322 1111110 0 011 12234556778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
+.|.|.|.|||...+..||++|+.+++.|+. +.|..+....++...+...+.+.+ .+++.++.+.|+||+
T Consensus 104 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~ 183 (262)
T PRK08140 104 AAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWR 183 (262)
T ss_pred EEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccE
Confidence 9999999999999988999999999988764 234444444445545544555543 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 184 vv~ 186 (262)
T PRK08140 184 VVD 186 (262)
T ss_pred eeC
Confidence 996
No 34
>KOG0016|consensus
Probab=99.03 E-value=4.2e-09 Score=95.22 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=117.7
Q ss_pred EEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHH------hhc----
Q psy14493 104 RINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAE------ERG---- 173 (318)
Q Consensus 104 ~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e------~~g---- 173 (318)
+.||-...++-.+|. +--++..+.+.-+.|+.+.|+...--.+++.-+.|-+...+.+ ..+
T Consensus 13 ~~~g~~~I~~~~~Pk---------k~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~ 83 (266)
T KOG0016|consen 13 RENGPFFIALNIRPK---------KKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN 83 (266)
T ss_pred ecCCcEEEEecCCCc---------ccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence 456655555554776 5678999999999999999988765466666655543322111 110
Q ss_pred -----hH---HHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhcccc
Q psy14493 174 -----QS---EAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSK 239 (318)
Q Consensus 174 -----~~---~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~ 239 (318)
.. ..+...+..+...+.|+|++|.||++|-|+...++||+|++.+++++.. ..|||++++.++...
T Consensus 84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~im 163 (266)
T KOG0016|consen 84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIM 163 (266)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhh
Confidence 00 1122256678888999999999999999999999999999998887665 589999999999888
Q ss_pred chHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 240 RASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 240 ~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+...+.|.+ +.++.++...|+|++|.+
T Consensus 164 G~~~A~E~ll~~~kltA~Ea~~~glVskif~ 194 (266)
T KOG0016|consen 164 GSASANEMLLFGEKLTAQEACEKGLVSKIFP 194 (266)
T ss_pred chhhHHHHHHhCCcccHHHHHhcCchhhhcC
Confidence 777787876 589999999999999996
No 35
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=1.9e-08 Score=92.62 Aligned_cols=138 Identities=15% Similarity=0.211 Sum_probs=97.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------ch-------HHHHHHHHHHHhcCCCCEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------GQ-------SEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g~-------~~~~~~~~~~~s~~~vP~I 193 (318)
..++++...+.+..+++.+.. ..+-+|.|.-.++++. |...... .. .....+.+..+...++|+|
T Consensus 23 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 102 (255)
T PRK07260 23 SNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVI 102 (255)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 467899999999999987765 4466777766554433 2111110 00 1122344556778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||+.....||++||++++.|+. +.|..+....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 103 aav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~ 182 (255)
T PRK07260 103 MCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYR 182 (255)
T ss_pred EEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcce
Confidence 9999999999999998999999999998876 235555544444444444444443 589999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 183 vv~ 185 (255)
T PRK07260 183 VAE 185 (255)
T ss_pred ecC
Confidence 996
No 36
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=1.6e-08 Score=93.20 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-CCCC-chhHHhh---------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP-GAFP-GIDAEER---------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~-Ga~~-~~~~e~~---------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
.+++......+..+++.+++ ..+-+|.|.-++ .++. |...... .........+..+..+++|+|++|.
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 24 NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 67899999999999988765 456677775544 2222 2111110 0112233456667788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|+|||...+..||++|+.++++|++ +.|..+.+..++...+...+.+.+ .+++.++.+.|+||+|++
T Consensus 104 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 182 (258)
T PRK09076 104 GYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVE 182 (258)
T ss_pred CEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecC
Confidence 999999999988899999999998877 346655555555555555555544 479999999999999997
No 37
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.01 E-value=1.5e-08 Score=94.39 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=98.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh----------------chH----HHHHHHHHHH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER----------------GQS----EAIGHSIYVM 185 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~----------------g~~----~~~~~~~~~~ 185 (318)
...+++....+.+..+++.+.+ ..+-+|.|.-++.++. |-..... ... ......+..+
T Consensus 28 ~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 107 (275)
T PLN02664 28 QRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAI 107 (275)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999988764 4577787766543332 1111100 001 1122344567
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHH
Q psy14493 186 SKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKL 255 (318)
Q Consensus 186 s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a 255 (318)
..+++|+|+.|.|.|+|||......||++|+.++++|++ +.|..+....++...+...+.+.+ .+++.++
T Consensus 108 ~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA 187 (275)
T PLN02664 108 EQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEA 187 (275)
T ss_pred HhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHH
Confidence 778999999999999999999998999999999998877 345545444455555555555554 4899999
Q ss_pred HHcCCcceeec
Q psy14493 256 KSIGLINKIIK 266 (318)
Q Consensus 256 ~~~G~vD~ii~ 266 (318)
.+.|+||++++
T Consensus 188 ~~~GLv~~vv~ 198 (275)
T PLN02664 188 KELGLVSRVFG 198 (275)
T ss_pred HHcCCCceeeC
Confidence 99999999996
No 38
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.01 E-value=1.1e-08 Score=94.62 Aligned_cols=152 Identities=11% Similarity=0.186 Sum_probs=102.2
Q ss_pred cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCC--CCC-chhHHhh--------ch
Q psy14493 106 NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPG--AFP-GIDAEER--------GQ 174 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~G--a~~-~~~~e~~--------g~ 174 (318)
+|.-+.|--|++. .-.+++......+..+++.+++..+-+|.|.-.+| ++. |...... ..
T Consensus 11 ~~~v~~itlnrp~---------~~Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~ 81 (261)
T PRK11423 11 INKIATITFNNPA---------KRNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSY 81 (261)
T ss_pred ECCEEEEEEcCcc---------ccCCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHH
Confidence 4444445555554 34688999999999999887766666666653221 221 2111111 01
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh
Q psy14493 175 SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL 248 (318)
Q Consensus 175 ~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~ 248 (318)
.......+..+..+++|+|++|.|.|+|||+..+..||++||.++++|++ +.|..+....+.+..+...+.+.+
T Consensus 82 ~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~ 161 (261)
T PRK11423 82 DDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMF 161 (261)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHH
Confidence 12233455667788999999999999999999888899999999998776 234444444444444444454543
Q ss_pred ----cccHHHHHHcCCcceeec
Q psy14493 249 ----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 ----~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.++.+.|+||+|++
T Consensus 162 l~g~~~~a~eA~~~GLv~~vv~ 183 (261)
T PRK11423 162 FTASPITAQRALAVGILNHVVE 183 (261)
T ss_pred HcCCCcCHHHHHHcCCcCcccC
Confidence 589999999999999996
No 39
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=1.9e-08 Score=92.78 Aligned_cols=139 Identities=17% Similarity=0.316 Sum_probs=97.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCC-----CchhHH--------hhchHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAF-----PGIDAE--------ERGQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~-----~~~~~e--------~~g~~~~~~~~~~~~s~~~vP~I 193 (318)
...+++....+.+..+++.+++. .+-+|.|.-.+.++ +.+-.+ ...........+..+..+++|+|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 102 (260)
T PRK07511 23 ARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVI 102 (260)
T ss_pred cccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 34688999999999999888654 56677775433332 221111 00112233445566778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|+|||......||++|++++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||+
T Consensus 103 Aav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~ 182 (260)
T PRK07511 103 AAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNR 182 (260)
T ss_pred EEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccE
Confidence 9999999999999998999999999998876 345555555444444444444443 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 183 vv~ 185 (260)
T PRK07511 183 LAE 185 (260)
T ss_pred eeC
Confidence 996
No 40
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=2.1e-08 Score=92.18 Aligned_cols=139 Identities=21% Similarity=0.297 Sum_probs=99.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh-----c---hHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER-----G---QSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~-----g---~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
...+++....+.+.++++.++. ..+-+|.|.-.++++. |...... . ........+..+..+++|+|++|.
T Consensus 26 ~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 105 (251)
T PRK06023 26 KKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVD 105 (251)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4578999999999999987764 4577777766554433 1111110 0 112233455677788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|||......||++|+.++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 106 G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 184 (251)
T PRK06023 106 GLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVD 184 (251)
T ss_pred CceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeC
Confidence 999999999998999999999998776 245555555555544444444443 479999999999999996
No 41
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=1.9e-08 Score=92.73 Aligned_cols=139 Identities=14% Similarity=0.180 Sum_probs=99.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------ch-HHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------GQ-SEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g~-~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++....+.+.++++.++. ..+-+|.|.-.++++. |...... .. .......+..+..+++|+|++|.|
T Consensus 24 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G 103 (257)
T PRK05862 24 ALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAG 103 (257)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 3468899999999999987764 4567787776543332 1111110 01 123344556778889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||......||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+|++
T Consensus 104 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 181 (257)
T PRK05862 104 YALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVP 181 (257)
T ss_pred EEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeC
Confidence 99999999998999999999988876 345555555555555555555554 489999999999999996
No 42
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=1.9e-08 Score=92.74 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=96.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-CCCC-chhHHhhc---------hHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP-GAFP-GIDAEERG---------QSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~-Ga~~-~~~~e~~g---------~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++......+..+++.++. ..+-+|.|.-++ .++. |....... ........+..+..+++|+|++
T Consensus 27 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 106 (256)
T PRK06143 27 SLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIAR 106 (256)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4568899999999999988764 456667776544 2332 22111110 1122234455677789999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEEe----C-hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSVI----S-PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v~----g-P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|+|||......||++|+.++++|++. | |..+....++...+...+.+.+ .++++++++.|+||++++
T Consensus 107 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 186 (256)
T PRK06143 107 IPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVP 186 (256)
T ss_pred ECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecC
Confidence 999999999999989999999999877651 1 3333444455555555555543 489999999999999997
No 43
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=1.9e-08 Score=93.38 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=98.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHh-----------hchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEE-----------RGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~-----------~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
..++++...+.+..+++.++. ..+-+|.|.-.++++. |..... ..........+..+..+++|+|++
T Consensus 33 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 112 (268)
T PRK07327 33 LNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSA 112 (268)
T ss_pred cCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 468899999999999987764 4566777765443332 111110 011222344556677889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|+|||...+..||++|+.++++|++ +.|..+....++...+...+.+.+ .+++.++++.|+||+++
T Consensus 113 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 192 (268)
T PRK07327 113 IHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAV 192 (268)
T ss_pred EcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceec
Confidence 99999999999988899999999998876 334545555556555555555554 58999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 193 ~ 193 (268)
T PRK07327 193 D 193 (268)
T ss_pred C
Confidence 6
No 44
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.99 E-value=2.4e-08 Score=90.23 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=96.5
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCcEEEEecCCCCCC-chhHHhh--------c-hHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 130 GMAKPEGYRKAVRLMHIAE-KFNLPIFTFIDTPGAFP-GIDAEER--------G-QSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~-~~~lPiV~lvDs~Ga~~-~~~~e~~--------g-~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
-++++.....+...++.++ ..++-+|.|.-.++++. |-..... . ........+.++...++|+|+.|.|
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G 108 (222)
T PRK05869 29 NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITG 108 (222)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 6889999999999997765 45677777765443332 1110000 0 1122234566778889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|+|||...+..||++||.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 109 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 186 (222)
T PRK05869 109 YALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVA 186 (222)
T ss_pred EeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeC
Confidence 99999999999999999999988877 235544444444445544444443 589999999999999996
No 45
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.99 E-value=2.6e-08 Score=92.18 Aligned_cols=139 Identities=17% Similarity=0.236 Sum_probs=97.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-C-CcEEEEecCCCCCC-chhHHhh-------------c-hH-HHHHHHHHHHhcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-N-LPIFTFIDTPGAFP-GIDAEER-------------G-QS-EAIGHSIYVMSKLK 189 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~-lPiV~lvDs~Ga~~-~~~~e~~-------------g-~~-~~~~~~~~~~s~~~ 189 (318)
...+++....+.+.++++.+.+. . +-+|.|.-.+.++. |...... + .. ..+...+..+..++
T Consensus 24 ~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (266)
T PRK05981 24 VMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLP 103 (266)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence 45788999999999999888754 3 66677765443332 1111110 0 01 11234556677889
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcC
Q psy14493 190 VPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIG 259 (318)
Q Consensus 190 vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G 259 (318)
+|+|++|.|.|+|||......||++||+++++++. +.|..+.....++..+...+.+.+ .+++.++.+.|
T Consensus 104 kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~G 183 (266)
T PRK05981 104 CPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWG 183 (266)
T ss_pred CCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcC
Confidence 99999999999999999988899999999988875 345545544445444444444443 48999999999
Q ss_pred Ccceeec
Q psy14493 260 LINKIIK 266 (318)
Q Consensus 260 ~vD~ii~ 266 (318)
+||++++
T Consensus 184 lv~~vv~ 190 (266)
T PRK05981 184 LVNRVVD 190 (266)
T ss_pred CceEeeC
Confidence 9999996
No 46
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.98 E-value=1.6e-08 Score=93.35 Aligned_cols=139 Identities=16% Similarity=0.220 Sum_probs=97.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
...+++......+..+++.+....+-+|.|.-.+..+. |...... .....+...+..+..+++|+|++|
T Consensus 26 ~~Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav 105 (260)
T PRK07659 26 ALNALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI 105 (260)
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 45788999999999999887555677777766554333 2111110 011223344556777899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|+|||......||++|++++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 185 (260)
T PRK07659 106 HGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIG 185 (260)
T ss_pred cCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHhh
Confidence 9999999999988899999999998776 234433334444445554555554 489999999999999983
No 47
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.97 E-value=2.3e-08 Score=91.99 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=96.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------c---hHHHHHHHH-HHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------G---QSEAIGHSI-YVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g---~~~~~~~~~-~~~s~~~vP~Iav 195 (318)
...+++......+.++++.+.+ ..+-+|.|.-.++++. |...... . ........+ ..+..+++|+|++
T Consensus 19 ~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 98 (255)
T PRK06563 19 KRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVA 98 (255)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEE
Confidence 3468999999999999987664 4566777766554433 1111100 0 001112222 2466788999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|+|||...+..||++||.++++|++ +.|..++...+++..+...+.+.+ .+++.++.+.|+||+++
T Consensus 99 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 178 (255)
T PRK06563 99 VQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVV 178 (255)
T ss_pred EcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEee
Confidence 99999999999998999999999998877 335555555555555555555543 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 179 ~ 179 (255)
T PRK06563 179 P 179 (255)
T ss_pred C
Confidence 6
No 48
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.97 E-value=2.1e-08 Score=93.43 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=99.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------c-------hHHHHHHHHHHHhcCCCCE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------G-------QSEAIGHSIYVMSKLKVPL 192 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g-------~~~~~~~~~~~~s~~~vP~ 192 (318)
...+++......+.++++.++. ..+-+|.|.-.+.++. |.....+ . ........+..+..+++|+
T Consensus 28 ~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 107 (275)
T PRK09120 28 KRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPT 107 (275)
T ss_pred cccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4578999999999999988764 4567777766544332 1111100 0 0011233456677889999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcc
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLIN 262 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD 262 (318)
|++|.|.|.|||...+..||++|++++++|++ +.|.++....++...+...+.+.+ .+++.++.+.|+|+
T Consensus 108 IAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~ 187 (275)
T PRK09120 108 IAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVN 187 (275)
T ss_pred EEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcc
Confidence 99999999999999998999999999998877 345655555555555555555543 48999999999999
Q ss_pred eeec
Q psy14493 263 KIIK 266 (318)
Q Consensus 263 ~ii~ 266 (318)
++++
T Consensus 188 ~vv~ 191 (275)
T PRK09120 188 ESVP 191 (275)
T ss_pred eecC
Confidence 9996
No 49
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.97 E-value=2.9e-08 Score=91.55 Aligned_cols=139 Identities=20% Similarity=0.222 Sum_probs=97.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-CCCC-chhHHhh---------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP-GAFP-GIDAEER---------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~-Ga~~-~~~~e~~---------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++....+.+.++++.+.+ ..+-+|.|.-.+ +++. |...... .........+..+..+++|+|++
T Consensus 24 ~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 103 (260)
T PRK05809 24 ALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAA 103 (260)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3468899999999999987764 446666665544 3332 2111110 01112234555677889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+++
T Consensus 104 v~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 183 (260)
T PRK05809 104 INGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVV 183 (260)
T ss_pred EcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCccc
Confidence 99999999999988999999999988876 345555555555545544554443 47999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 184 ~ 184 (260)
T PRK05809 184 E 184 (260)
T ss_pred C
Confidence 6
No 50
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.97 E-value=3.7e-08 Score=90.97 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=97.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh-------chHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER-------GQSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~-------g~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...++++.....+..+++.++.. .+-+|.|.-.+.++. |-....+ .........+..+..+++|+|++|.|
T Consensus 24 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 103 (258)
T PRK06190 24 ARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAING 103 (258)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 45789999999999999887654 566777765443332 1111100 00112234556677889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|+|||...+..||++||.+++.|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 104 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~ 181 (258)
T PRK06190 104 AAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVP 181 (258)
T ss_pred EeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecC
Confidence 99999999988999999999998875 235444444445545554555543 579999999999999996
No 51
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.96 E-value=2.9e-08 Score=91.55 Aligned_cols=139 Identities=15% Similarity=0.185 Sum_probs=98.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh-------------chHHHHHHHHHHHhcCCCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER-------------GQSEAIGHSIYVMSKLKVP 191 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~-------------g~~~~~~~~~~~~s~~~vP 191 (318)
...+++.+..+.+.++++.+++ ..+-+|.|.-+++ ++. |.....+ .........+..+..+++|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 102 (260)
T PRK05980 23 KLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKP 102 (260)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCC
Confidence 3468899999999999988765 4567777766542 332 2211111 0011122345567778999
Q ss_pred EEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCc
Q psy14493 192 LISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLI 261 (318)
Q Consensus 192 ~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~v 261 (318)
+|+.|.|.|.|||......||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+|
T Consensus 103 vIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv 182 (260)
T PRK05980 103 VIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLV 182 (260)
T ss_pred EEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCC
Confidence 999999999999999988999999999988776 345555555555555555555543 4899999999999
Q ss_pred ceeec
Q psy14493 262 NKIIK 266 (318)
Q Consensus 262 D~ii~ 266 (318)
|++++
T Consensus 183 ~~vv~ 187 (260)
T PRK05980 183 NAVVP 187 (260)
T ss_pred CcccC
Confidence 99996
No 52
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.96 E-value=3.6e-08 Score=90.81 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=97.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh------chH-HHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER------GQS-EAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~------g~~-~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++....+.+.++++.+++. .+-+|.|.-.+.++. |...... ... ......+..+..+++|+|+.|.|
T Consensus 22 ~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 101 (255)
T PRK09674 22 ARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNG 101 (255)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 45789999999999999887654 566777765443332 2111110 011 12233455677889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||......||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 102 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 179 (255)
T PRK09674 102 YALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFP 179 (255)
T ss_pred EeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecC
Confidence 99999999998999999999998876 345544444444444444444443 489999999999999996
No 53
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=4.4e-08 Score=91.30 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=96.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh-------------chHHHHHHHHHHHhcCCCCE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER-------------GQSEAIGHSIYVMSKLKVPL 192 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~-------------g~~~~~~~~~~~~s~~~vP~ 192 (318)
...+++......+..+++.+.. ..+-+|.|.-.+.++. |...... .........+..+..+++|+
T Consensus 37 ~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 116 (277)
T PRK08258 37 RKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPI 116 (277)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4468899999999988887763 4566777755443332 1111110 01111234556677889999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcccEEEE------eC-hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCc
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------IS-PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLI 261 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~g-P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~v 261 (318)
|++|.|.|+|||...+..||++||.+++++++ +. |..+....+++..+...+.+.+ .+++.++.+.|+|
T Consensus 117 IAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv 196 (277)
T PRK08258 117 IAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFF 196 (277)
T ss_pred EEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCC
Confidence 99999999999999998999999999988876 12 3444445555555554555543 4899999999999
Q ss_pred ceeec
Q psy14493 262 NKIIK 266 (318)
Q Consensus 262 D~ii~ 266 (318)
|++++
T Consensus 197 ~~vv~ 201 (277)
T PRK08258 197 NRLVE 201 (277)
T ss_pred cEecC
Confidence 99996
No 54
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=3.5e-08 Score=90.89 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=98.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh--------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER--------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~--------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
.-.+++....+.+..+++.+.. ..+-+|.|.-.++++. |...... .........+..+..+++|+|++|.
T Consensus 25 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 104 (259)
T PRK06688 25 KKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVN 104 (259)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 3468899999999999987765 4577777765443332 1111100 1123344556677788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|+|||......||++|+.++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 105 G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 183 (259)
T PRK06688 105 GPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVP 183 (259)
T ss_pred CeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecC
Confidence 999999999988999999999988877 335544444444444444444443 489999999999999996
No 55
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.94 E-value=5e-08 Score=90.53 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=98.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-CCC-chhHHhh-----------chHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-AFP-GIDAEER-----------GQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-a~~-~~~~e~~-----------g~~~~~~~~~~~~s~~~vP~I 193 (318)
...+++....+.+..+++.+++. .+-+|.|.-+++ ++. |-..... .........+..+..+++|+|
T Consensus 31 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 110 (269)
T PRK06127 31 RHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTI 110 (269)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 45789999999999999888765 455666665442 332 2111110 011222345566778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|+|||......||++|++++++|++ +.|..+.....++..+...+.+.+ .+++.++.+.|+||+
T Consensus 111 aav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~ 190 (269)
T PRK06127 111 ACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHR 190 (269)
T ss_pred EEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCE
Confidence 9999999999999998999999999998877 345555555455555555555543 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
|++
T Consensus 191 vv~ 193 (269)
T PRK06127 191 VTA 193 (269)
T ss_pred eeC
Confidence 996
No 56
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.94 E-value=4.8e-08 Score=85.61 Aligned_cols=138 Identities=18% Similarity=0.258 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHH-----------hhchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAE-----------ERGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e-----------~~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
-.+++....+.+.++++.+.. ..+-+|.|.-.++.+. |.... ...........+..+...++|+|++
T Consensus 20 ~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~ 99 (195)
T cd06558 20 RNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAA 99 (195)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 478899999999999988876 4566777766544433 21111 1112344556666777889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEEeC------hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSVIS------PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v~g------P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|+|+.....||+++|.+++.+++.. |..+....+.+......+.+.. .+++.++.+.|+||+++
T Consensus 100 v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~ 179 (195)
T cd06558 100 VNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVV 179 (195)
T ss_pred ECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeec
Confidence 9999999999998889999999998887632 3333333333333333333332 47999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 180 ~ 180 (195)
T cd06558 180 P 180 (195)
T ss_pred C
Confidence 6
No 57
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.94 E-value=4.2e-08 Score=90.56 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=98.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh---------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER---------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~---------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++......+.++++.+++ ..+-+|.|.-.++ ++. |.....+ .........+..+..+++|+|+.
T Consensus 24 ~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 103 (260)
T PRK07657 24 AANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAA 103 (260)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3468899999999999987764 4566777766554 333 2111111 11123344566677889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|+|||+.....||++|+.++++|++ +.|..+.+...+...+...+.+.+ .+++.++.+.|+||+++
T Consensus 104 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 183 (260)
T PRK07657 104 INGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVV 183 (260)
T ss_pred EcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeec
Confidence 99999999999998999999999988776 345555555455545544554543 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 184 ~ 184 (260)
T PRK07657 184 P 184 (260)
T ss_pred C
Confidence 6
No 58
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.94 E-value=4.2e-08 Score=90.63 Aligned_cols=137 Identities=13% Similarity=0.219 Sum_probs=97.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
..++++...+.+.++++.++. ..+.+|.|.-.++++. |.....+ .........+..+..+++|+|+
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 104 (262)
T PRK05995 25 RNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIA 104 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEE
Confidence 458899999999999988765 4567777766554333 2111100 0012334556677788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
+|.|.|.|||+..+..||++|+.++++|++ +.|.++...+ .+..+...+.+.+ .+++.++.+.|+||++
T Consensus 105 av~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l-~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v 183 (262)
T PRK05995 105 RVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYV-IRAMGERAARRYFLTAERFDAAEALRLGLVHEV 183 (262)
T ss_pred EECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHH-HHHhCHHHHHHHHHcCCccCHHHHHHcCCCCee
Confidence 999999999999998999999999988877 3455444443 3344544555543 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 184 v~ 185 (262)
T PRK05995 184 VP 185 (262)
T ss_pred cC
Confidence 96
No 59
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.94 E-value=5.1e-08 Score=89.85 Aligned_cols=139 Identities=17% Similarity=0.267 Sum_probs=96.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh-------chH-HHHHHHHHHHhcCCCCEEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER-------GQS-EAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~-------g~~-~~~~~~~~~~s~~~vP~IavV 196 (318)
...+++......+..+++.++. ..+-+|.|.-+++ ++. |.....+ ... ..+...+..+..+++|+|++|
T Consensus 22 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 101 (256)
T TIGR03210 22 KMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARV 101 (256)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4468899999999999988764 4566777765442 222 2211111 001 112334556778899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|.|||...+..||++|+.++++|++. .|.++....+.+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 102 ~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~ 181 (256)
T TIGR03210 102 QGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVP 181 (256)
T ss_pred CCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeC
Confidence 99999999999999999999999888772 23333334445555555555554 489999999999999996
No 60
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.93 E-value=6.4e-08 Score=89.06 Aligned_cols=138 Identities=16% Similarity=0.166 Sum_probs=95.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhhc------hHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEERG------QSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~g------~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
...+++....+.+.++++.+++. .+.+|.|.-++.++. |-...... .....+..+. ...+++|+|++|.|.
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~kPvIaav~G~ 101 (254)
T PRK08252 23 ARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLT-ERPPRKPLIAAVEGY 101 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHH-HhcCCCCEEEEECCE
Confidence 34688999999999999887644 577887766544332 11111110 0111111111 135689999999999
Q ss_pred CchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 200 GGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 200 ~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|||......||++|+.+++.|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+|++
T Consensus 102 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 178 (254)
T PRK08252 102 ALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTE 178 (254)
T ss_pred EehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecC
Confidence 9999999988899999999998876 345555555555555555555544 489999999999999997
No 61
>PLN02600 enoyl-CoA hydratase
Probab=98.92 E-value=6.2e-08 Score=89.04 Aligned_cols=138 Identities=18% Similarity=0.219 Sum_probs=96.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh---------chHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER---------GQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~---------g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
..+++....+.+.++++.+++ ..+-+|.|.-.+| ++. |.....+ .........+..+..+++|+|+.|
T Consensus 16 ~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 95 (251)
T PLN02600 16 KNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVV 95 (251)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 357899999999999987664 4577777764432 222 2111110 011222334556778899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|+|||......||++||.++++|++ +.|..+....++...+...+.+.+ .+++.++.+.|+||++++
T Consensus 96 ~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 175 (251)
T PLN02600 96 EGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVP 175 (251)
T ss_pred cCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeC
Confidence 9999999999998999999999998877 345555554455545544554543 589999999999999996
No 62
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.92 E-value=5.3e-08 Score=89.95 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=96.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhhc--------hHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEERG--------QSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~g--------~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
.+++......+.++++.++. ..+-+|.|.-+++ ++. |....... ........+.++..+++|+|+.|.|
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 103 (261)
T PRK03580 24 NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNG 103 (261)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECC
Confidence 68899999999999987764 4567777765442 222 22111110 0111234456677889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|+|||......||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++++.|+||++++
T Consensus 104 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 181 (261)
T PRK03580 104 YAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVP 181 (261)
T ss_pred eeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecC
Confidence 99999999998999999999998876 345555554445545544554443 589999999999999997
No 63
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.92 E-value=6.6e-08 Score=89.24 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=94.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh------chHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER------GQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~------g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
-.+++......+.++++.+++ ..+-+|.|.-+++ ++. |...... ......+..+..+..+++|+|+.|.|.
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~ 104 (259)
T PRK06494 25 MNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGV 104 (259)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCE
Confidence 358899999999999987664 4567777765442 222 2211111 011111222333446789999999999
Q ss_pred CchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 200 GGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 200 ~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 105 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~ 181 (259)
T PRK06494 105 AMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVP 181 (259)
T ss_pred EecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecC
Confidence 9999999988899999999998877 335545444455555555555543 489999999999999997
No 64
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.92 E-value=7.8e-08 Score=88.60 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=94.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC-----CchhHHh--hc-----hHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAF-----PGIDAEE--RG-----QSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~-----~~~~~e~--~g-----~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++....+.+..+++.++. .+-+|.+.-.+.++ +.+-.+. .. ........+..+...++|+|+.
T Consensus 24 ~~Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 102 (255)
T PRK07112 24 AQNTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAH 102 (255)
T ss_pred ccCCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEE
Confidence 3468899999999999988773 56677776544333 2211110 00 0122334556677789999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++||.++++|++ +.|.++... ..+..+...+.+.+ .+++.++.+.|+||+++
T Consensus 103 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~-l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 181 (255)
T PRK07112 103 VRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPF-LIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYG 181 (255)
T ss_pred EecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHH-HHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceec
Confidence 99999999999998999999999998877 334433322 23334444444443 48999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 182 ~ 182 (255)
T PRK07112 182 A 182 (255)
T ss_pred C
Confidence 6
No 65
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.92 E-value=5e-08 Score=89.55 Aligned_cols=138 Identities=16% Similarity=0.189 Sum_probs=97.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh-----c--hHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER-----G--QSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~-----g--~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++.....-+..+++.+.+. .+.+|.|...+.++. |...... + .... ...+..+...++|+|++|.|
T Consensus 25 ~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIaav~G 103 (249)
T PRK07110 25 NKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTE-ANLYSLALNCPIPVIAAMQG 103 (249)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhh-HHHHHHHHcCCCCEEEEecC
Confidence 44688999999999999877654 567787776554332 2111111 0 0111 24556677889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 104 ~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~ 181 (249)
T PRK07110 104 HAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLP 181 (249)
T ss_pred ceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeC
Confidence 99999999998999999999987766 234444445555444544555544 489999999999999996
No 66
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.91 E-value=1.8e-08 Score=92.49 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=97.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHh---------hchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEE---------RGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~---------~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
...+++....+.+.++++.+++ ..+-+|.|.-++.++. |-.... ..........+..+...++|+|+.|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 102 (249)
T PRK05870 23 RRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAV 102 (249)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3468899999999999988764 4577777766544332 111111 0112333445566778899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|+|||+.....||++||.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 103 ~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 182 (249)
T PRK05870 103 NGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVAD 182 (249)
T ss_pred CCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHHh
Confidence 9999999999998999999999998765 234444444444444544555544 489999999999999983
No 67
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.91 E-value=5.3e-08 Score=89.95 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=98.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh-------chHHHHHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER-------GQSEAIGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~-------g~~~~~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++......+..+++.+++ ..+-+|.|.-.+.++. |.....+ .........+..+..+++|+|++|.|
T Consensus 28 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 107 (261)
T PRK08138 28 ARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNG 107 (261)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 3468899999999999987764 4567777765443332 2111111 01122334556677889999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||...+..||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++++.|+||++++
T Consensus 108 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (261)
T PRK08138 108 YALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVE 185 (261)
T ss_pred EEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecC
Confidence 99999999988999999999988776 235544444445545555555543 479999999999999996
No 68
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.90 E-value=1e-07 Score=86.31 Aligned_cols=135 Identities=14% Similarity=0.180 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-chhHHh--------hchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP-GIDAEE--------RGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~-~~~~e~--------~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
.++++.....+..+++.++ ...-+|.+.-.+.++. |..... ..........+..+...++|+|+.|.|.|
T Consensus 24 Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a 102 (229)
T PRK06213 24 NALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHA 102 (229)
T ss_pred CCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 6789999999999998876 4566777776554443 211111 11122334556677788999999999999
Q ss_pred chhhhhhhccccEEEEEcc-cEEEEe-------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 201 GSGGALAIAVSDITLMLQY-AIYSVI-------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 201 ~ggga~~~~~~D~via~~~-A~i~v~-------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|||...+..||++||.++ +++++- .|.++...+ ........+.+.+ .+++.++.+.|+||++++
T Consensus 103 ~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l-~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~ 179 (229)
T PRK06213 103 IAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELA-RDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVP 179 (229)
T ss_pred eHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHH-HHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccC
Confidence 9999999888999999999 877761 233333222 2222222333332 489999999999999996
No 69
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.90 E-value=6.9e-08 Score=89.16 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=97.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh--------ch-H-------HHHHHHHHHHhcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER--------GQ-S-------EAIGHSIYVMSKLK 189 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~--------g~-~-------~~~~~~~~~~s~~~ 189 (318)
...+++....+.+..+++.+++. .+-+|.|.-+++++. |...... .. . ....+.+..+..++
T Consensus 23 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (262)
T PRK07509 23 KMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLP 102 (262)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCC
Confidence 44789999999999999887654 466777766554443 1111100 00 0 01112233456788
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcC
Q psy14493 190 VPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIG 259 (318)
Q Consensus 190 vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G 259 (318)
+|+|+.|.|.|+|||......||++|+.++++|++. .|..+.....+...+...+.+.+ .+++.++.+.|
T Consensus 103 kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~G 182 (262)
T PRK07509 103 VPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELG 182 (262)
T ss_pred CCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcC
Confidence 999999999999999999889999999999988772 35555555555545544454543 58999999999
Q ss_pred Ccceeec
Q psy14493 260 LINKIIK 266 (318)
Q Consensus 260 ~vD~ii~ 266 (318)
+||++++
T Consensus 183 lv~~vv~ 189 (262)
T PRK07509 183 LVTHVSD 189 (262)
T ss_pred Chhhhhc
Confidence 9999986
No 70
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.89 E-value=7.1e-08 Score=90.79 Aligned_cols=139 Identities=17% Similarity=0.135 Sum_probs=97.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCC-----CchhHH---------------------hhchHHH-HH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAF-----PGIDAE---------------------ERGQSEA-IG 179 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~-----~~~~~e---------------------~~g~~~~-~~ 179 (318)
...+++.....-+..+++.+++ ..+-+|.|.-.+.++ +.+-.. ....+.. ..
T Consensus 24 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (296)
T PRK08260 24 KLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGG 103 (296)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHH
Confidence 4578999999999999988764 456777776544333 221100 0001111 12
Q ss_pred HHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----c
Q psy14493 180 HSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----G 249 (318)
Q Consensus 180 ~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~ 249 (318)
..+..+..+++|+|++|.|.|+|||...+..||++|+.++++|++ +.|..+.....++..+...+.+.+ .
T Consensus 104 ~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~ 183 (296)
T PRK08260 104 RVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRV 183 (296)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCc
Confidence 345567778999999999999999999999999999999998876 235555555555555555555554 4
Q ss_pred ccHHHHHHcCCcceeec
Q psy14493 250 LTADKLKSIGLINKIIK 266 (318)
Q Consensus 250 ~~a~~a~~~G~vD~ii~ 266 (318)
+++.++.+.|+||++++
T Consensus 184 ~~a~eA~~~GLv~~vv~ 200 (296)
T PRK08260 184 FDAQEALDGGLVRSVHP 200 (296)
T ss_pred cCHHHHHHCCCceeecC
Confidence 79999999999999996
No 71
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.89 E-value=8e-08 Score=89.02 Aligned_cols=137 Identities=13% Similarity=0.221 Sum_probs=96.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
.-+++......+.++++.++.. .+-+|.|.-.+.++. |.....+ .....+...+..+..+++|+|+
T Consensus 27 ~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 106 (265)
T PRK05674 27 NNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLA 106 (265)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEE
Confidence 4578999999999999887654 456777765543332 1111100 0112344566677888999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
.|.|.|.|||...+..||++|+.++++|++ +.|..+...+. ...+...+.+.+ .+++.++.+.|+|++|
T Consensus 107 aV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~-~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 185 (265)
T PRK05674 107 VVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVV-KAIGERAARRYALTAERFDGRRARELGLLAES 185 (265)
T ss_pred EEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHH-HHhCHHHHHHHHHhCcccCHHHHHHCCCccee
Confidence 999999999999998999999999998877 34554444433 334444444443 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 186 v~ 187 (265)
T PRK05674 186 YP 187 (265)
T ss_pred cC
Confidence 96
No 72
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.89 E-value=5.9e-08 Score=89.58 Aligned_cols=139 Identities=18% Similarity=0.223 Sum_probs=96.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chhHHhh---------chH-HHHHHHHHHHhcCCCCEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GIDAEER---------GQS-EAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~~e~~---------g~~-~~~~~~~~~~s~~~vP~Ia 194 (318)
...+++....+.+.++++.++. ..+-+|.|.-+++ ++. |.....+ ... ......+..+..+++|+|+
T Consensus 23 ~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 102 (259)
T TIGR01929 23 VRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIA 102 (259)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 3468899999999999987764 4466777765442 222 2111100 000 1122344567788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
.|.|.|.|||......||++||.++++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||++
T Consensus 103 av~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 182 (259)
T TIGR01929 103 MVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTV 182 (259)
T ss_pred EEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccc
Confidence 999999999999988899999999988877 235444444455555545555544 5899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 183 v~ 184 (259)
T TIGR01929 183 VP 184 (259)
T ss_pred cC
Confidence 96
No 73
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.89 E-value=9.8e-08 Score=88.28 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=95.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-CCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-AFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-a~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
...+++....+.+..+++.+.+. .+-+|.|.-+++ ++. |...... .....+...+..+..+++|+|+
T Consensus 28 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 107 (262)
T PRK06144 28 ARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIA 107 (262)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 34688999999999999887654 566777765442 222 2211110 0112233455567788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEEe-----C--hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSVI-----S--PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v~-----g--P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
.|.|.|.|||...+..||++||.+++.|++- | |..+....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 108 av~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~ 187 (262)
T PRK06144 108 AIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNE 187 (262)
T ss_pred EECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCe
Confidence 9999999999999988999999999888652 2 3333334444445544555544 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 188 vv~ 190 (262)
T PRK06144 188 VVE 190 (262)
T ss_pred ecC
Confidence 996
No 74
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.89 E-value=3.6e-08 Score=86.16 Aligned_cols=90 Identities=21% Similarity=0.158 Sum_probs=73.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhh
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALA 207 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~ 207 (318)
-|.+++.....+.|.++.|.+.+ -+||..+||||..+.. .......+...++|+++.|.|.|.|+|++.
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~----------~~~I~~~l~~~~~pvva~V~g~AaSaG~~i 76 (178)
T cd07021 7 EGEIDPGLAAFVERALKEAKEEGADAVVLDIDTPGGRVDS----------ALEIVDLILNSPIPTIAYVNDRAASAGALI 76 (178)
T ss_pred eeEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCCHHH----------HHHHHHHHHhCCCCEEEEECCchHHHHHHH
Confidence 37788888899999999998876 5688999999966442 223344455667999999999999999999
Q ss_pred hccccEEEEEcccEEEEeChh
Q psy14493 208 IAVSDITLMLQYAIYSVISPE 228 (318)
Q Consensus 208 ~~~~D~via~~~A~i~v~gP~ 228 (318)
...||+++|.|++.++..+|-
T Consensus 77 a~a~d~i~m~p~a~iG~~~~v 97 (178)
T cd07021 77 ALAADEIYMAPGATIGAAEPI 97 (178)
T ss_pred HHhCCeEEECCCCeEecCeeE
Confidence 989999999999999988773
No 75
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.88 E-value=6.8e-08 Score=88.93 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
.+++....+.+..+++.+.+ ..+.+|.|.-.+.++. |...... .........+..+..+++|+|++|.
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 68899999999999987764 4577777765443222 1111100 0112233455667788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|.|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.++++.|+||++++
T Consensus 103 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 181 (257)
T PRK07658 103 GAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFP 181 (257)
T ss_pred CeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecC
Confidence 999999999988899999999987776 235544444445545554555544 589999999999999996
No 76
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.88 E-value=8.5e-08 Score=88.65 Aligned_cols=138 Identities=14% Similarity=0.225 Sum_probs=97.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~I 193 (318)
.-.+++....+.+..+++.+++. .+-+|.|.-.+.++. |-..... .....+...+..+..+++|+|
T Consensus 25 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (262)
T PRK07468 25 KHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLI 104 (262)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 34689999999999999887654 466677765443332 2111100 011223445566778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||...+..||++|++++++|++ +.|..+.+.+.+. .+...+.+.+ .+++.++.+.|+||+
T Consensus 105 aav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a~~lll~g~~~~a~eA~~~Glv~~ 183 (262)
T PRK07468 105 GRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEEAVRLGLLSR 183 (262)
T ss_pred EEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHHHHHHHhCCccCHHHHHHcCCcce
Confidence 9999999999999988899999999988776 3455545444433 4555555544 589999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 184 v~~ 186 (262)
T PRK07468 184 VVP 186 (262)
T ss_pred ecC
Confidence 996
No 77
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.87 E-value=5e-08 Score=90.59 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=96.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhhc--------------hH-----HHHHHHHHHHh
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEERG--------------QS-----EAIGHSIYVMS 186 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~g--------------~~-----~~~~~~~~~~s 186 (318)
...+++....+.+.++++.+... .+-+|.|.-.+.++. |-...... .. ....+.+..+.
T Consensus 26 ~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (272)
T PRK06210 26 RLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLT 105 (272)
T ss_pred cccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHH
Confidence 45789999999999999877643 456676665443332 11111100 00 01122345677
Q ss_pred cCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHH
Q psy14493 187 KLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLK 256 (318)
Q Consensus 187 ~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~ 256 (318)
.+++|+|++|.|.|+|||...+..||++|+.++++|++ +.|..+.....+...+...+.+.+ .+++.++.
T Consensus 106 ~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~ 185 (272)
T PRK06210 106 ALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEAL 185 (272)
T ss_pred hCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHH
Confidence 78999999999999999999999999999999998875 234444555555545554555544 48999999
Q ss_pred HcCCcceeec
Q psy14493 257 SIGLINKIIK 266 (318)
Q Consensus 257 ~~G~vD~ii~ 266 (318)
+.|+||++++
T Consensus 186 ~~Glv~~vv~ 195 (272)
T PRK06210 186 RLGLVNRVVP 195 (272)
T ss_pred HcCCcceecC
Confidence 9999999996
No 78
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.87 E-value=8.5e-08 Score=88.33 Aligned_cols=152 Identities=18% Similarity=0.240 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
-+++......+..+++.++.. .+.+|.|.-.+.++. |-..... .........+..+..+++|+|+.|.
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (257)
T COG1024 27 NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVN 106 (257)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEc
Confidence 689999999999999998876 788888887664333 2111111 1123344567788889999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeecC
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIKE 267 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~~ 267 (318)
|.|+|||.-....||++|+.++++|++ +-|..+++..+++..+...+.+.+ .+++.++.+.|+||++++.
T Consensus 107 G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 107 GYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPD 186 (257)
T ss_pred ceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCC
Confidence 999999999998999999999998877 234335556666666666666643 4899999999999999972
Q ss_pred ccccCCCCchHHHHHHHHHHhhc
Q psy14493 268 PIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 268 p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
.-.++....++.+.
T Consensus 187 ---------~~~l~~~a~~~a~~ 200 (257)
T COG1024 187 ---------AEELLERALELARR 200 (257)
T ss_pred ---------HHHHHHHHHHHHHH
Confidence 23455555555544
No 79
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.87 E-value=9.1e-08 Score=89.14 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=96.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh----------------chHHHHHHHHHHHhcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER----------------GQSEAIGHSIYVMSKLK 189 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~----------------g~~~~~~~~~~~~s~~~ 189 (318)
...+++....+.+.++++.+++ ..+-+|.|.-.+.++. |-..... .......+.+..+..++
T Consensus 30 ~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (276)
T PRK05864 30 RMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLH 109 (276)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 3468899999999999987765 3567777765443332 1111100 01122334455677889
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eCh-hHHHHhhhccccchHHHHHHh----cccHHHHHHc
Q psy14493 190 VPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISP-EGCASILWKTSKRASDAAEAL----GLTADKLKSI 258 (318)
Q Consensus 190 vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP-~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~ 258 (318)
+|+|++|.|.|.|||...+..||++|+.++++|++ +.| ..+.....++..+...+.+.+ .+++.++++.
T Consensus 110 kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~ 189 (276)
T PRK05864 110 QPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERI 189 (276)
T ss_pred CCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHc
Confidence 99999999999999999998999999999987765 223 444444455545555555543 4899999999
Q ss_pred CCcceeec
Q psy14493 259 GLINKIIK 266 (318)
Q Consensus 259 G~vD~ii~ 266 (318)
|+|+++++
T Consensus 190 Glv~~vv~ 197 (276)
T PRK05864 190 GLVSRQVP 197 (276)
T ss_pred CCcceeeC
Confidence 99999996
No 80
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.86 E-value=9.1e-08 Score=88.58 Aligned_cols=139 Identities=16% Similarity=0.198 Sum_probs=94.2
Q ss_pred cCCCCCH-HHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh---------------chHH-HHHHHHHHHhcC
Q psy14493 128 NFGMAKP-EGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER---------------GQSE-AIGHSIYVMSKL 188 (318)
Q Consensus 128 ~gG~~~~-~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~---------------g~~~-~~~~~~~~~s~~ 188 (318)
...+++. ...+.+..+++.+++ ..+.+|.|.-.+.++. |...... ..+. .+...+..+..+
T Consensus 23 ~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (266)
T PRK09245 23 TRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNL 102 (266)
T ss_pred cccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcC
Confidence 3457774 788888888877764 4577777765443332 1111100 0011 122345567788
Q ss_pred CCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHc
Q psy14493 189 KVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSI 258 (318)
Q Consensus 189 ~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~ 258 (318)
++|+|+.|.|.|.|||...+..||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++++.
T Consensus 103 ~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~ 182 (266)
T PRK09245 103 EVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEW 182 (266)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHc
Confidence 999999999999999999988899999999988876 335544444444444444444443 4799999999
Q ss_pred CCcceeec
Q psy14493 259 GLINKIIK 266 (318)
Q Consensus 259 G~vD~ii~ 266 (318)
|+||++++
T Consensus 183 Glv~~vv~ 190 (266)
T PRK09245 183 GLVSRVVP 190 (266)
T ss_pred CCcceecC
Confidence 99999996
No 81
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.86 E-value=1.2e-07 Score=87.91 Aligned_cols=138 Identities=16% Similarity=0.191 Sum_probs=94.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
...+++......+.++++.++.. .+-+|.|.-.+.++. |...... .......+.+..+..+++|+|++
T Consensus 31 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 110 (266)
T PRK08139 31 AFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIAR 110 (266)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 34678999999999999877644 466777755443322 1111100 01122334556677889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
|.|.|.|||...+..||++|+.++++|++- .|.... ....+..+...+.+.+ .+++.++.+.|+||+|+
T Consensus 111 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~-~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv 189 (266)
T PRK08139 111 VHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPM-VALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVV 189 (266)
T ss_pred ECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccH-HHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEee
Confidence 999999999999888999999999988772 233222 2233334444455544 47999999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
+
T Consensus 190 ~ 190 (266)
T PRK08139 190 P 190 (266)
T ss_pred C
Confidence 7
No 82
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.86 E-value=1.2e-07 Score=87.66 Aligned_cols=139 Identities=22% Similarity=0.287 Sum_probs=95.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh-----c-hHH------HHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER-----G-QSE------AIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~-----g-~~~------~~~~~~~~~s~~~vP~I 193 (318)
...+++....+.+.++++.++.. .+-+|.|.-.+.++. |...... + ... .....+..+..+++|+|
T Consensus 25 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvI 104 (263)
T PRK07799 25 ARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLI 104 (263)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEE
Confidence 34689999999999999887654 466777765443332 1111110 0 000 01112333557789999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
+.|.|.|+|||......||++|+.++++|++ +.|..+....+.+..+...+.+.+ .+++.++.+.|+||+
T Consensus 105 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~ 184 (263)
T PRK07799 105 AAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGH 184 (263)
T ss_pred EEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccE
Confidence 9999999999999988999999999988777 345555555455545555555544 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 185 vv~ 187 (263)
T PRK07799 185 VVP 187 (263)
T ss_pred ecC
Confidence 997
No 83
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.86 E-value=1.1e-07 Score=88.38 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=100.9
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCC-CCC-chhHHhh--------c
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPG-AFP-GIDAEER--------G 173 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~G-a~~-~~~~e~~--------g 173 (318)
.+|.-+.|.-|++. ...+++....+.+..+++.++.. .+-+|.|.-.++ ++. |...... .
T Consensus 19 ~~~~v~~itlnrp~---------~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 89 (273)
T PRK07396 19 SADGIAKITINRPE---------VRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDD 89 (273)
T ss_pred ecCCEEEEEEcCCc---------ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchh
Confidence 44443444445554 34689999999999999887654 466677765442 222 2111110 0
Q ss_pred hHH--HHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeC------hhHHHHhhhccccchHHHH
Q psy14493 174 QSE--AIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVIS------PEGCASILWKTSKRASDAA 245 (318)
Q Consensus 174 ~~~--~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~g------P~~~a~il~~~~~~~~~a~ 245 (318)
... .....+..+..+++|+|+.|.|.|+|||...+..||++|+.+++.|++.. |..+....+....+...+.
T Consensus 90 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~ 169 (273)
T PRK07396 90 GVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAR 169 (273)
T ss_pred hhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHH
Confidence 011 11234456778899999999999999999998889999999998888732 3333333334444444455
Q ss_pred HHh----cccHHHHHHcCCcceeec
Q psy14493 246 EAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 246 e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+.+ .+++.++.+.|+||+|++
T Consensus 170 ~l~ltg~~~~A~eA~~~GLv~~vv~ 194 (273)
T PRK07396 170 EIWFLCRQYDAQEALDMGLVNTVVP 194 (273)
T ss_pred HHHHhCCCcCHHHHHHcCCcCeecC
Confidence 544 489999999999999996
No 84
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.85 E-value=7.5e-08 Score=88.53 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHh------hchHHHHHHHHHHHhcCCCCEEEEEcCCCc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEE------RGQSEAIGHSIYVMSKLKVPLISTIIGEGG 201 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~------~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ 201 (318)
.+++......+.++++.+++. .+-+|.|.-.++++. |..... ..........+..+..+++|+|+.|.|.|+
T Consensus 22 Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 101 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCL 101 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeee
Confidence 688999999999999887644 566777765443332 111111 011222334556677889999999999999
Q ss_pred hhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 202 SGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 202 ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|||......||++|+.++++|++ +.|.++. ...++..+...+.+.+ .+++.++.+.|+|+++++
T Consensus 102 GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~-~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~ 175 (251)
T TIGR03189 102 GGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAAS-CLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAE 175 (251)
T ss_pred eHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchH-HHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecC
Confidence 99999998999999999998877 2344333 3445545555555554 489999999999999996
No 85
>KOG0368|consensus
Probab=98.84 E-value=1.1e-09 Score=116.45 Aligned_cols=181 Identities=17% Similarity=0.214 Sum_probs=141.3
Q ss_pred CCCCHHHHH-HhhcCCCCCchh-hHH----------hhhccc--ccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCC
Q psy14493 53 SKLTPWQIS-QIARHPKRPYTL-DYI----------REIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKG 118 (318)
Q Consensus 53 ~~ltareRi-~~~~d~~~~~~~-~~i----------~~~~d~--~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~ 118 (318)
..+++|+|. +...+-..+||. .+| ..+||. |.|.-.. |+ .+||||.+|++|.||||||.+..
T Consensus 1784 ~~~D~~dR~vef~p~~q~~yD~Rwli~G~~~~~~~~~GlFDk~SF~Eil~~--WA--ktVV~GRArLgGIPvGVIavEtr 1859 (2196)
T KOG0368|consen 1784 EPKDPPDRDVEFVPSTQNPYDPRWLIAGKNDSTGWLSGLFDKGSFDEILSG--WA--KTVVTGRARLGGIPVGVIAVETR 1859 (2196)
T ss_pred CCCCCcccceeccCCCCCCCCHHHHhcCCcCCCccccccccCccHHHHHhH--Hh--hHheecceecCCcceEEEEEEee
Confidence 556788886 333333567774 444 347774 7776643 78 79999999999999999999843
Q ss_pred C------------Cc-cchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHH
Q psy14493 119 R------------NV-NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVM 185 (318)
Q Consensus 119 ~------------~~-~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~ 185 (318)
. +. +......|-.|.|.++-|.++++.-.++.++|++.|.+.-||..|...........++..+.++
T Consensus 1860 tve~~vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInDFNrEqLPLmIiAnwRGFSGGqkDMy~~VLkfGa~IVDaL 1939 (2196)
T KOG0368|consen 1860 TVENIVPADPANLDSEEQITQEAGQVWYPDSAFKTAQAINDFNREQLPLMIIANWRGFSGGQKDMYDQVLKFGAYIVDAL 1939 (2196)
T ss_pred eeeeeccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhhhccccCCeEEeecccccCccchHHHHHHHHHHHHHHHHH
Confidence 2 11 2336778889999999999999988889999999999999999998777777788889999999
Q ss_pred hcCCCCEEEEEc--CCCchhhhhhhc----cccEEEEE--cccEEEEeChhHHHHhhhccc
Q psy14493 186 SKLKVPLISTII--GEGGSGGALAIA----VSDITLML--QYAIYSVISPEGCASILWKTS 238 (318)
Q Consensus 186 s~~~vP~IavV~--G~~~ggga~~~~----~~D~via~--~~A~i~v~gP~~~a~il~~~~ 238 (318)
+...-|++..|- |+ .-||+|... .+|+.=|. ..++-+|.-|++.++|-++++
T Consensus 1940 ~~YkQPv~vYIPp~gE-LRGGsWvVvD~tIn~~~memyAD~~sRggVLEPeg~v~IKfRre 1999 (2196)
T KOG0368|consen 1940 RQYKQPVLVYIPPMGE-LRGGSWVVVDPTINPDQMEMYADEESRGGVLEPEGVVEIKFRRE 1999 (2196)
T ss_pred HHhCCceEEEcCcchh-hcCceEEEEcCccCHHHHHHHhhhhhccccccCCceEEEEeeHH
Confidence 999999998876 65 577888754 25655444 459999999999988888754
No 86
>PLN02888 enoyl-CoA hydratase
Probab=98.83 E-value=1.4e-07 Score=87.37 Aligned_cols=138 Identities=18% Similarity=0.185 Sum_probs=94.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh-----chHH-HHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER-----GQSE-AIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~-----g~~~-~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
..+++......+..+++.+++ ..+-+|.|.-.+.++. |...... +... .....+..+..+++|+|++|.|.|
T Consensus 31 ~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a 110 (265)
T PLN02888 31 LNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFA 110 (265)
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCee
Confidence 468899999999999987764 4566777765442332 2111111 0111 112344567778999999999999
Q ss_pred chhhhhhhccccEEEEEcccEEEEe------ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 201 GSGGALAIAVSDITLMLQYAIYSVI------SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 201 ~ggga~~~~~~D~via~~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+|||...+..||++|+.+++.|+.. .|..+....+++..+...+.+.+ .+++.++.+.|+||++++
T Consensus 111 ~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 186 (265)
T PLN02888 111 ITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVE 186 (265)
T ss_pred echHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeC
Confidence 9999999888999999999877662 34444444444445544454443 589999999999999996
No 87
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=98.83 E-value=2.3e-08 Score=85.61 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=68.9
Q ss_pred CCCCCH---HHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhh
Q psy14493 129 FGMAKP---EGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGA 205 (318)
Q Consensus 129 gG~~~~---~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga 205 (318)
.|.++. ..+..+.+.++.+... -||+..+||||..+... ......+...++|+++++.|.|.|+|+
T Consensus 6 ~g~I~~~~~~~~~~~~~~l~~~~~~-~~i~l~inspGG~~~~~----------~~i~~~i~~~~~pvi~~v~g~a~s~g~ 74 (160)
T cd07016 6 YGDIGSDWGVTAKEFKDALDALGDD-SDITVRINSPGGDVFAG----------LAIYNALKRHKGKVTVKIDGLAASAAS 74 (160)
T ss_pred EeEeCCCcccCHHHHHHHHHhccCC-CCEEEEEECCCCCHHHH----------HHHHHHHHhcCCCEEEEEcchHHhHHH
Confidence 355555 5677777777776655 79999999999764322 223344455579999999999999999
Q ss_pred hhhccccEEEEEcccEEEEeChhH
Q psy14493 206 LAIAVSDITLMLQYAIYSVISPEG 229 (318)
Q Consensus 206 ~~~~~~D~via~~~A~i~v~gP~~ 229 (318)
+.+..||+++|.|++.+.+-.|.+
T Consensus 75 ~ia~a~d~~~~~~~a~~~~~~~~~ 98 (160)
T cd07016 75 VIAMAGDEVEMPPNAMLMIHNPST 98 (160)
T ss_pred HHHhcCCeEEECCCcEEEEECCcc
Confidence 999899999999999998866643
No 88
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.81 E-value=2.7e-07 Score=86.53 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=92.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHh------CCCcEEEEecC-CCCCC-chhHHhh------c------h-HHHHHHHHHHHh-
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK------FNLPIFTFIDT-PGAFP-GIDAEER------G------Q-SEAIGHSIYVMS- 186 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~------~~lPiV~lvDs-~Ga~~-~~~~e~~------g------~-~~~~~~~~~~~s- 186 (318)
.-++++...+.+..+++.+++ ..+-+|.|.-. ++++. |.....+ + . .......+..+.
T Consensus 37 ~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (287)
T PRK08788 37 RPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHR 116 (287)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999987765 34666777554 22322 2111110 0 0 011122222222
Q ss_pred --cCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHH
Q psy14493 187 --KLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADK 254 (318)
Q Consensus 187 --~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~ 254 (318)
.+++|+|+.|.|.|+|||...+..||++|+.++++|++ +.|..+....+++..+...+.+.+ .+++.+
T Consensus 117 ~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~e 196 (287)
T PRK08788 117 GFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEE 196 (287)
T ss_pred hcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHH
Confidence 57899999999999999999988899999999998776 335544444445545555555544 489999
Q ss_pred HHHcCCcceeec
Q psy14493 255 LKSIGLINKIIK 266 (318)
Q Consensus 255 a~~~G~vD~ii~ 266 (318)
+.+.|+||++++
T Consensus 197 A~~~GLV~~vv~ 208 (287)
T PRK08788 197 LHDMGLVDVLVE 208 (287)
T ss_pred HHHCCCCcEecC
Confidence 999999999996
No 89
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.81 E-value=2.7e-07 Score=85.09 Aligned_cols=136 Identities=14% Similarity=0.155 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh----------ch-HHHHHHHHHHHhcCCCCEEEEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER----------GQ-SEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~----------g~-~~~~~~~~~~~s~~~vP~IavV 196 (318)
.++++...+.+.++++.+++. .+-+|.|.-.++++. |...... .. .......+..+..+++|+|++|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAV 104 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788999999999999887654 566777765444433 2111110 01 1122344566778899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEEe----ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSVI----SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v~----gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|+|||...+..||++|+.++++|++. |--++. ....+..+...+.+.+ .+++.++.+.|+||++++
T Consensus 105 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~-~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~ 181 (257)
T PRK06495 105 NGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGG-KHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLP 181 (257)
T ss_pred CCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccH-HHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecC
Confidence 99999999999989999999999887762 111111 1222333333444443 489999999999999996
No 90
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.81 E-value=1.5e-07 Score=86.75 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=92.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhhc-----hHHH--HHHHHHHHhcCCCCEEEEEcC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEERG-----QSEA--IGHSIYVMSKLKVPLISTIIG 198 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~g-----~~~~--~~~~~~~~s~~~vP~IavV~G 198 (318)
...+++......+..+++.+++. .+-+|.|.-.+.++. |....... .... ...........++|+|++|.|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G 102 (254)
T PRK08259 23 VRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSG 102 (254)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECC
Confidence 44689999999999999887654 455666655433322 11111110 0000 011111223568999999999
Q ss_pred CCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 199 EGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 199 ~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.|.|||...+..||++||.++++|++ +.|..+......+..+...+.+.+ .+++.++.+.|+||+|++
T Consensus 103 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~ 180 (254)
T PRK08259 103 YAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVP 180 (254)
T ss_pred EEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeC
Confidence 99999999988899999999988765 234444444444445544555543 489999999999999996
No 91
>PRK08321 naphthoate synthase; Validated
Probab=98.80 E-value=2.5e-07 Score=87.41 Aligned_cols=139 Identities=16% Similarity=0.168 Sum_probs=94.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC------------CCCCchhHH-----------h-hc--hH-H-HH
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP------------GAFPGIDAE-----------E-RG--QS-E-AI 178 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~------------Ga~~~~~~e-----------~-~g--~~-~-~~ 178 (318)
...++++.....+.++++.++. ..+-+|.|.-.+ |..+....+ . .. .. . ..
T Consensus 45 ~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (302)
T PRK08321 45 VRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHI 124 (302)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHH
Confidence 4468899999999999988764 456777775432 232221000 0 00 00 0 11
Q ss_pred HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEE-cccEEEEe------ChhHHHHhhhccccchHHHHHHh---
Q psy14493 179 GHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLML-QYAIYSVI------SPEGCASILWKTSKRASDAAEAL--- 248 (318)
Q Consensus 179 ~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~-~~A~i~v~------gP~~~a~il~~~~~~~~~a~e~~--- 248 (318)
......+..+++|+|++|.|.|+|||...+..||++|+. ++++|++. .|.++....+.+..+...+.+.+
T Consensus 125 ~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG 204 (302)
T PRK08321 125 LEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLG 204 (302)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcC
Confidence 123345667889999999999999999999899999999 57888762 24444444455555555555544
Q ss_pred -cccHHHHHHcCCcceeec
Q psy14493 249 -GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 -~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.++.+.|+||++++
T Consensus 205 ~~~~A~eA~~~GLv~~vv~ 223 (302)
T PRK08321 205 RTYSAEEAHDMGAVNAVVP 223 (302)
T ss_pred CccCHHHHHHCCCceEeeC
Confidence 489999999999999997
No 92
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.78 E-value=2e-07 Score=86.00 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=95.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~I 193 (318)
.-.+++......+.++++.++.. .+-+|.|.-.++++. |...... .........+..+..+++|+|
T Consensus 26 ~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 105 (260)
T PRK07827 26 NRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVI 105 (260)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 34688999999999999877654 567777766554433 1111100 011233445667778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||+..+..||++||.+++.|++ +.|..++....++.. ...+.+.+ .+++.++++.|+||+
T Consensus 106 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~ 184 (260)
T PRK07827 106 AAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTA 184 (260)
T ss_pred EEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCccc
Confidence 9999999999999988899999999998877 234444444444432 22333433 479999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+.+
T Consensus 185 v~~ 187 (260)
T PRK07827 185 AAD 187 (260)
T ss_pred chH
Confidence 874
No 93
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.78 E-value=2.1e-07 Score=89.06 Aligned_cols=138 Identities=19% Similarity=0.199 Sum_probs=98.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCC-CCC-chh----HH-------hhchHHH-HHHHHHHHhcCCCCEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPG-AFP-GID----AE-------ERGQSEA-IGHSIYVMSKLKVPLI 193 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~G-a~~-~~~----~e-------~~g~~~~-~~~~~~~~s~~~vP~I 193 (318)
.-+++....+.+..+++.+.. ..+-+|.|.-+++ ++. |.. .+ ....+.. ....+..+..+++|+|
T Consensus 49 ~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVI 128 (360)
T TIGR03200 49 YNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVI 128 (360)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 357899999999999987654 5688888876552 332 111 11 0111111 2234556777899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
+.|.|.|.|||...+..||++|+.++++|++ +.|.++++...++..+...+.+.+ .+++.+|.+.|+||+
T Consensus 129 AAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~ 208 (360)
T TIGR03200 129 CRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMD 208 (360)
T ss_pred EEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChhe
Confidence 9999999999999988899999999998887 345555555555555555555543 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 209 VVp 211 (360)
T TIGR03200 209 VVP 211 (360)
T ss_pred ecC
Confidence 997
No 94
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.77 E-value=2.2e-07 Score=85.20 Aligned_cols=136 Identities=14% Similarity=0.091 Sum_probs=92.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCC-chhHHhhc-----h-HHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFP-GIDAEERG-----Q-SEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~-~~~~e~~g-----~-~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
...+++....+.+.++++.+++. .+-+|.|.-++.++. |.....+. . .......+..+..+++|+|++|.|.
T Consensus 20 ~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 99 (248)
T PRK06072 20 KLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGV 99 (248)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 45789999999999999887654 456677765443332 21111110 1 1122334556777889999999999
Q ss_pred CchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 200 GGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 200 ~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
|.|||......||++||.+++.|++ +.|..+......+..+. .+.+.+ .+++.++.+.|+||.+
T Consensus 100 a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 100 TAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred eehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence 9999998888899999999987765 23444444444444442 344433 4899999999999953
No 95
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.77 E-value=1.2e-07 Score=90.93 Aligned_cols=152 Identities=11% Similarity=0.059 Sum_probs=102.8
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-CCCC-chhHHhh---------
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP-GAFP-GIDAEER--------- 172 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~-Ga~~-~~~~e~~--------- 172 (318)
++|.-..|.-|+|. ...+++......+.++++.++.. .+-+|.|.-.+ .++. |......
T Consensus 9 ~~~~v~~itLnrP~---------~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 79 (342)
T PRK05617 9 VEGGVGVITLNRPK---------ALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDP 79 (342)
T ss_pred EECCEEEEEECCCc---------cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCc
Confidence 34544445555554 44678999999999999877654 46677776655 2322 2111110
Q ss_pred ----chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchH
Q psy14493 173 ----GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRAS 242 (318)
Q Consensus 173 ----g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~ 242 (318)
.........+..+..+++|+|++|.|.|.|||+.....||++||.++++|++ +.|.++.+....+... .
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~ 158 (342)
T PRK05617 80 LAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-A 158 (342)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-H
Confidence 0111223445567788999999999999999999988999999999998877 3455555554444333 3
Q ss_pred HHHHHh----cccHHHHHHcCCcceeec
Q psy14493 243 DAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 243 ~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+.+.+ .+++.++.+.|+|+++++
T Consensus 159 ~a~~llltG~~i~A~eA~~~GLv~~vv~ 186 (342)
T PRK05617 159 LGTYLALTGARISAADALYAGLADHFVP 186 (342)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecC
Confidence 444443 489999999999999997
No 96
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.76 E-value=7.1e-07 Score=81.50 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCC--CcEEEEecCC-----CCCCchhH------Hh-hchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 131 MAKPEGYRKAVRLMHIAEKFN--LPIFTFIDTP-----GAFPGIDA------EE-RGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 131 ~~~~~~~~K~~r~~~~A~~~~--lPiV~lvDs~-----Ga~~~~~~------e~-~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
+++......+.++++.+.... ..+|.+...+ |+.+.+-. +. ..........+.++..+++|+|++|
T Consensus 22 al~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 101 (239)
T PLN02267 22 RLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAV 101 (239)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 588999999999998876553 3456555543 33332110 00 0111223445566778899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcc-cEEEE-------eChhHHHHhhhccccchHHH-HHHh----cccHHHHHHcCCcce
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQY-AIYSV-------ISPEGCASILWKTSKRASDA-AEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~-A~i~v-------~gP~~~a~il~~~~~~~~~a-~e~~----~~~a~~a~~~G~vD~ 263 (318)
.|.|.|||+..+..||++||.++ +++++ ..|.++...+. ...+...+ .+.+ .+++.++.+.|+||+
T Consensus 102 ~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~-~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~ 180 (239)
T PLN02267 102 TGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLR-AKIGSPAARRDVLLRAAKLTAEEAVEMGIVDS 180 (239)
T ss_pred CCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHH-HHcChHHHHHHHHHcCCcCCHHHHHHCCCcce
Confidence 99999999998888999999854 66654 23555544443 33443444 2333 479999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 181 vv~ 183 (239)
T PLN02267 181 AHD 183 (239)
T ss_pred ecC
Confidence 996
No 97
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.76 E-value=5.4e-07 Score=84.14 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC--CCCC-chhHHhhc----------hHHH-HHHHHHHHhcCCCCEEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP--GAFP-GIDAEERG----------QSEA-IGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~--Ga~~-~~~~e~~g----------~~~~-~~~~~~~~s~~~vP~Ia 194 (318)
.+++......+.++++..++. .+-+|.|.-.+ +++. |.....+. .+.. ....+..+..+++|+|+
T Consensus 33 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 688999999999999877654 46677775543 2332 22111110 0111 12245567788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------e-ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------I-SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~-gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
+|.|.|+|||...+..||++|+.++++|++ + -|..+....+....+...+.+.+ .+++.++.+.|+||+
T Consensus 113 aV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~ 192 (278)
T PLN03214 113 AIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDE 192 (278)
T ss_pred EEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcE
Confidence 999999999999988999999999998876 3 25455555555555555555554 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
|++
T Consensus 193 vv~ 195 (278)
T PLN03214 193 VVP 195 (278)
T ss_pred ecC
Confidence 996
No 98
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.76 E-value=3.4e-07 Score=86.41 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=93.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-----chhHHhhc----------------------------
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-----GIDAEERG---------------------------- 173 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-----~~~~e~~g---------------------------- 173 (318)
...++++.....+..+++.++. ..+-+|.|.-.+.++. .+-.+...
T Consensus 30 ~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (302)
T PRK08272 30 KGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMID 109 (302)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhh
Confidence 4578999999999999988765 4577777766443332 21110000
Q ss_pred --hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChh-----HHHHhhhccccchHHHHH
Q psy14493 174 --QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPE-----GCASILWKTSKRASDAAE 246 (318)
Q Consensus 174 --~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~-----~~a~il~~~~~~~~~a~e 246 (318)
........+..+..+++|+|+.|.|.|+|||...+..||++|+.++++|++-.-. ... .+....+...+.+
T Consensus 110 ~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~~--~~~~~vG~~~A~~ 187 (302)
T PRK08272 110 YQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATG--MWAYRLGPQRAKR 187 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChHH--HHHHHhhHHHHHH
Confidence 0112233455677889999999999999999999989999999999887652111 111 2222334444555
Q ss_pred Hh----cccHHHHHHcCCcceeec
Q psy14493 247 AL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 247 ~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+ .+++.++.+.|+|+++++
T Consensus 188 llltG~~i~a~eA~~~GLv~~vv~ 211 (302)
T PRK08272 188 LLFTGDCITGAQAAEWGLAVEAVP 211 (302)
T ss_pred HHHcCCccCHHHHHHcCCCceecC
Confidence 44 489999999999999996
No 99
>PLN02921 naphthoate synthase
Probab=98.75 E-value=3e-07 Score=87.70 Aligned_cols=139 Identities=20% Similarity=0.280 Sum_probs=96.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCC-CCCC-chhHHhhc--------hHHH--HHHHHHHHhcCCCCEEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTP-GAFP-GIDAEERG--------QSEA--IGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~-Ga~~-~~~~e~~g--------~~~~--~~~~~~~~s~~~vP~Ia 194 (318)
...+++......+.++++.++. ..+-+|.|.-++ .++. |....... .... ....+..+..+++|+|+
T Consensus 87 ~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 166 (327)
T PLN02921 87 RRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIA 166 (327)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEE
Confidence 4478999999999999988764 457777776654 2332 21111110 0111 12234567778999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEEeC------hhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSVIS------PEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v~g------P~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
.|.|.|+|||......||++||.+++.|++.. |.++.........+...+.+.+ .+++.++.+.|+||++
T Consensus 167 aVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~v 246 (327)
T PLN02921 167 MVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTV 246 (327)
T ss_pred EECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEE
Confidence 99999999999998889999999999887632 3333333344445555555554 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 247 v~ 248 (327)
T PLN02921 247 VP 248 (327)
T ss_pred eC
Confidence 96
No 100
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.75 E-value=1.6e-07 Score=81.44 Aligned_cols=124 Identities=23% Similarity=0.268 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEc---CCCchhhh
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTII---GEGGSGGA 205 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~---G~~~ggga 205 (318)
|.+++....-+.|.++.|.+.+ -+|+..+||||..+... ..+ ...+...++|+++.|. |.|.++|+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~~-------~~I---~~~i~~~~~pvv~~v~p~g~~AaSag~ 77 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAA-------GNI---VQRIQQSKIPVIIYVYPPGASAASAGT 77 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHHH-------HHH---HHHHHhcCcCEEEEEecCCCeehhHHH
Confidence 7788888889999999998765 57999999999765532 122 3334456799999999 99999999
Q ss_pred hhhccccEEEEEcccEEEEeChhHHHHhhhc-----c-ccc--------hH----------HHHHH-----hcccHHHHH
Q psy14493 206 LAIAVSDITLMLQYAIYSVISPEGCASILWK-----T-SKR--------AS----------DAAEA-----LGLTADKLK 256 (318)
Q Consensus 206 ~~~~~~D~via~~~A~i~v~gP~~~a~il~~-----~-~~~--------~~----------~a~e~-----~~~~a~~a~ 256 (318)
+.+..||.++|.|++.++..+|-... .. . ..+ .. +.++. +-+++.+|.
T Consensus 78 ~I~~a~~~i~m~p~s~iG~~~pi~~~---g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~ 154 (172)
T cd07015 78 YIALGSHLIAMAPGTSIGACRPILGY---SQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEAL 154 (172)
T ss_pred HHHHhcCceEECCCCEEEEccccccC---CCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHH
Confidence 99988999999999999999985310 00 0 000 00 01111 137999999
Q ss_pred HcCCcceeec
Q psy14493 257 SIGLINKIIK 266 (318)
Q Consensus 257 ~~G~vD~ii~ 266 (318)
+.|+||.|..
T Consensus 155 ~~G~iD~ia~ 164 (172)
T cd07015 155 KYGVIEVVAR 164 (172)
T ss_pred HcCCceeeeC
Confidence 9999999996
No 101
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.74 E-value=3.6e-07 Score=85.74 Aligned_cols=139 Identities=18% Similarity=0.186 Sum_probs=92.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCC-----Cchh---HH-----------------------hhc-h
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAF-----PGID---AE-----------------------ERG-Q 174 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~-----~~~~---~e-----------------------~~g-~ 174 (318)
...+++....+.+.++++.+.. ..+-+|.|.-++.++ +.+- .+ ... .
T Consensus 24 ~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (288)
T PRK08290 24 ARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYARE 103 (288)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHH
Confidence 4578899999999999987654 457777776544333 2210 00 000 0
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE----eChhHHHHhhhccccchHHHHHHh--
Q psy14493 175 SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV----ISPEGCASILWKTSKRASDAAEAL-- 248 (318)
Q Consensus 175 ~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v----~gP~~~a~il~~~~~~~~~a~e~~-- 248 (318)
.......+..+..+++|+|++|.|.|+|||...+..||++|+.++++|++ +|-.+.....++...+...+.+.+
T Consensus 104 ~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~~~~~~~l~~~iG~~~A~~lllt 183 (288)
T PRK08290 104 WEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPWELGPRKAKELLFT 183 (288)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcCcchHHHHHHHhhHHHHHHHHHc
Confidence 01122334456778999999999999999999988899999999887765 121122233333334444444443
Q ss_pred --cccHHHHHHcCCcceeec
Q psy14493 249 --GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 --~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.++.+.|+||++++
T Consensus 184 G~~i~A~eA~~~GLV~~vv~ 203 (288)
T PRK08290 184 GDRLTADEAHRLGMVNRVVP 203 (288)
T ss_pred CCCCCHHHHHHCCCccEeeC
Confidence 489999999999999996
No 102
>KOG1680|consensus
Probab=98.73 E-value=1e-07 Score=87.14 Aligned_cols=138 Identities=20% Similarity=0.176 Sum_probs=100.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCCc-hhHHhhc-------hHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFPG-IDAEERG-------QSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~~-~~~e~~g-------~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
-.++.+.....+.+++...++ ...|+|.|.-+++++.. .+.+..- ......+.+..++..+.|+|+.|.|-
T Consensus 58 ~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~ 137 (290)
T KOG1680|consen 58 LNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGF 137 (290)
T ss_pred hccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeece
Confidence 357778878777777766554 56999999999888774 2211111 11223445555666889999999999
Q ss_pred CchhhhhhhccccEEEEEcccEEEEeChh------HHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 200 GGSGGALAIAVSDITLMLQYAIYSVISPE------GCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 200 ~~ggga~~~~~~D~via~~~A~i~v~gP~------~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|||.-...+||++||.++|.|++..++ .+.+.-+.+..+...|.|.. ++++++|.+.|+|+.|++
T Consensus 138 AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp 214 (290)
T KOG1680|consen 138 ALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVP 214 (290)
T ss_pred eeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeec
Confidence 99999999889999999999999885443 33334444555555666654 589999999999999997
No 103
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.73 E-value=5.1e-07 Score=82.91 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh---c-------hHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER---G-------QSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~---g-------~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
.++++.....+..+++.++. ..+-+|.|.-.+.++. |...... . ........+..+..+++|+|+.|.
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 102 (249)
T PRK07938 23 NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH 102 (249)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 78899999999999988764 4566777765443322 1111110 0 011223445567788999999999
Q ss_pred CCCchhhhhhhccccEEEEEcccEEEEe----ChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 198 GEGGSGGALAIAVSDITLMLQYAIYSVI----SPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 198 G~~~ggga~~~~~~D~via~~~A~i~v~----gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
|.|+|||...+..||++|+.++++|++. |--++. ....+..+...+.+.+ .+++.++.+.|+|+++++
T Consensus 103 G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~-~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 178 (249)
T PRK07938 103 GFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAA-THLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVP 178 (249)
T ss_pred CEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhH-HHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeC
Confidence 9999999999989999999999877662 211222 2223333444444443 589999999999999996
No 104
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.71 E-value=3.9e-07 Score=79.33 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCc-EEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc
Q psy14493 132 AKPEGYRKAVRLMHIAEKF-NLP-IFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIA 209 (318)
Q Consensus 132 ~~~~~~~K~~r~~~~A~~~-~lP-iV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~ 209 (318)
.+..+...+.+.++.+.+. ++. ||.-.+++|..+... ..+...+..+...++|+|+.|.|.|.|+|.+.+.
T Consensus 19 ~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~-------~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~ 91 (177)
T cd07014 19 QGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS-------EVIRAELAAARAAGKPVVASGGGNAASGGYWIST 91 (177)
T ss_pred CCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHH-------HHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHH
Confidence 3344567777778776554 454 455567777543321 2344456667777899999999999999999998
Q ss_pred cccEEEEEcccEEEEeChhHHHH----hhh------------ccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 210 VSDITLMLQYAIYSVISPEGCAS----ILW------------KTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 210 ~~D~via~~~A~i~v~gP~~~a~----il~------------~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.||+++|.|++.++..|....-. .+. .+....+...+.+ .+++.+|.+.|+||++..
T Consensus 92 a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~ 168 (177)
T cd07014 92 PANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGS 168 (177)
T ss_pred hCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCC
Confidence 99999999999999988743211 111 1111122222333 379999999999999996
No 105
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.70 E-value=5e-07 Score=87.91 Aligned_cols=152 Identities=11% Similarity=0.099 Sum_probs=103.6
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------c-h-
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------G-Q- 174 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g-~- 174 (318)
++|.-..|.-|++. .-.+++......+..+++.++. ..+-+|.|.-.+.++. |.....+ . .
T Consensus 17 ~~~~v~~ItLnrP~---------~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 87 (379)
T PLN02874 17 EKGRVRVITLNRPR---------QLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSC 87 (379)
T ss_pred EECCEEEEEECCCc---------cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHH
Confidence 45544445566654 3468899999999999988765 4577887766554433 2111111 0 0
Q ss_pred ---HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHH
Q psy14493 175 ---SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAA 245 (318)
Q Consensus 175 ---~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~ 245 (318)
.......+..+..+++|+|++|.|.|.|||...+..||++|+.++++|++ +.|.+++.....+..+. .+.
T Consensus 88 ~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~ 166 (379)
T PLN02874 88 LEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE 166 (379)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence 11112234456678899999999999999999988899999999998877 45666665555554332 333
Q ss_pred HHh----cccHHHHHHcCCcceeec
Q psy14493 246 EAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 246 e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+.+ .+++.++.+.|+||.+++
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~ 191 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVP 191 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeC
Confidence 332 489999999999999996
No 106
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=7.7e-07 Score=83.90 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=99.9
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCC-----CchhH-H---hh--
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAF-----PGIDA-E---ER-- 172 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~-----~~~~~-e---~~-- 172 (318)
.+|.-..|.-|+|. ...+++......+..+++.++. ..+-+|.|.-.+.++ +.+.. + ..
T Consensus 11 ~~~~Va~ItLnrP~---------~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~ 81 (298)
T PRK12478 11 TAGPVATITLNRPE---------QLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMT 81 (298)
T ss_pred ccCCEEEEEecCCc---------ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccc
Confidence 34544445556664 4578999999999999988765 467888887654333 22100 0 00
Q ss_pred ----chHHHH----------HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEe-----ChhHHHHh
Q psy14493 173 ----GQSEAI----------GHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVI-----SPEGCASI 233 (318)
Q Consensus 173 ----g~~~~~----------~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~-----gP~~~a~i 233 (318)
...... ...+..+..+++|+|+.|.|.|+|||...+..||++|+.++++|++- |.-.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~~~ 161 (298)
T PRK12478 82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMW 161 (298)
T ss_pred ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCchhHH
Confidence 000010 12344567789999999999999999999888999999999988762 22111111
Q ss_pred hhccccchHHHHHHh----cccHHHHHHcCCcceeec
Q psy14493 234 LWKTSKRASDAAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 234 l~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
. ...+...+.+.+ .+++.++++.|+|+++++
T Consensus 162 ~--~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~ 196 (298)
T PRK12478 162 L--YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVP 196 (298)
T ss_pred H--HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecC
Confidence 2 224444455554 489999999999999996
No 107
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=98.65 E-value=4e-07 Score=77.70 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=69.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhCC--CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhh
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEKFN--LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGA 205 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~~~--lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga 205 (318)
..|.+++.....+.+.++.+.+.. -+||.-+||+|..+... ..+.. .+...++|+++.+.|.|.++|.
T Consensus 4 i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~-------~~i~~---~l~~~~kpvva~~~g~~~s~g~ 73 (161)
T cd00394 4 INGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAG-------MNIVD---ALQASRKPVIAYVGGQAASAGY 73 (161)
T ss_pred EEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHH-------HHHHH---HHHHhCCCEEEEECChhHHHHH
Confidence 457788888888999998877643 56777789988654322 22333 3444458999999999999999
Q ss_pred hhhccccEEEEEcccEEEEeChh
Q psy14493 206 LAIAVSDITLMLQYAIYSVISPE 228 (318)
Q Consensus 206 ~~~~~~D~via~~~A~i~v~gP~ 228 (318)
+.+..||.++|.|++.+.+.||.
T Consensus 74 ~la~~~d~~~~~~~a~~~~~g~~ 96 (161)
T cd00394 74 YIATAANKIVMAPGTRVGSHGPI 96 (161)
T ss_pred HHHhCCCEEEECCCCEEEEeeeE
Confidence 88888999999999999998775
No 108
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.64 E-value=1.2e-06 Score=91.79 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLIS 194 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~Ia 194 (318)
-.+++......+..+++.++. ..+-+|.|.-.+.++. |-....+ .........+..+..+++|+|+
T Consensus 28 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 107 (715)
T PRK11730 28 VNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVA 107 (715)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 467899999999999987754 4567777766554333 2111110 0111233445667788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCccee
Q psy14493 195 TIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKI 264 (318)
Q Consensus 195 vV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~i 264 (318)
.|.|.|.|||...+..||++|+.++++|++ +-|..+.....++..+...+.+.+ .+++.++.+.|+||++
T Consensus 108 av~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~v 187 (715)
T PRK11730 108 AINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAV 187 (715)
T ss_pred EECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEe
Confidence 999999999999998999999999998887 346666666666666655555554 4899999999999999
Q ss_pred ec
Q psy14493 265 IK 266 (318)
Q Consensus 265 i~ 266 (318)
++
T Consensus 188 v~ 189 (715)
T PRK11730 188 VA 189 (715)
T ss_pred cC
Confidence 96
No 109
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.60 E-value=2.1e-06 Score=84.02 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=102.8
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------c---
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------G--- 173 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g--- 173 (318)
..|.-..|.-|.|. .-.+++......+.++++.+.+ ..+-+|.|.-.+.++. |-....+ +
T Consensus 43 ~~g~v~~ItLNRP~---------~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~ 113 (401)
T PLN02157 43 GSGCSRTAILNRPP---------ALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPD 113 (401)
T ss_pred EECCEEEEEECCCC---------ccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchH
Confidence 45554445566664 4468999999999999877654 5567777765444433 1111110 1
Q ss_pred ----hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHH
Q psy14493 174 ----QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASD 243 (318)
Q Consensus 174 ----~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~ 243 (318)
.+.........+..+++|+|++|.|.|.|||.-.+..||++|+++++.|++ +-|..+++....+..+. .
T Consensus 114 ~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~ 192 (401)
T PLN02157 114 AIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-L 192 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-H
Confidence 011222334567788999999999999999999988999999999988877 34665555544443332 2
Q ss_pred HHHHh----cccHHHHHHcCCcceeec
Q psy14493 244 AAEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 244 a~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+.+.. .+++.++.+.|++|.+++
T Consensus 193 a~~L~LTG~~i~A~eA~~~GLv~~vVp 219 (401)
T PLN02157 193 GEYLGLTGLKLSGAEMLACGLATHYIR 219 (401)
T ss_pred HHHHHHcCCcCCHHHHHHcCCceEEeC
Confidence 33332 479999999999999996
No 110
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.56 E-value=2.5e-06 Score=83.00 Aligned_cols=151 Identities=14% Similarity=0.118 Sum_probs=100.5
Q ss_pred cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------ch---
Q psy14493 106 NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------GQ--- 174 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g~--- 174 (318)
+|.-..|.-|++. .-.+++......+.++++.+.. ..+-+|.|.-++.++. |-..... +.
T Consensus 16 ~~~i~~ItLnRP~---------~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~ 86 (381)
T PLN02988 16 KSSVRILTLNRPK---------QLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRL 86 (381)
T ss_pred ECCEEEEEECCCC---------ccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhH
Confidence 4443344455554 3468899999999999977654 4577777766553333 2111110 10
Q ss_pred ----HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHH
Q psy14493 175 ----SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDA 244 (318)
Q Consensus 175 ----~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a 244 (318)
+.........+...++|+|++|.|.|.|||...+..||++|++++++|++ +-|..+++....+..+. .+
T Consensus 87 ~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~ 165 (381)
T PLN02988 87 GANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FG 165 (381)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HH
Confidence 11112234466778999999999999999999988899999999988776 34555555555443332 22
Q ss_pred HHHh----cccHHHHHHcCCcceeec
Q psy14493 245 AEAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 245 ~e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
.+.+ .+++.++.+.|++|.+++
T Consensus 166 ~~l~LTG~~i~a~eA~~~GLv~~vv~ 191 (381)
T PLN02988 166 EYVGLTGARLDGAEMLACGLATHFVP 191 (381)
T ss_pred HHHHHcCCCCCHHHHHHcCCceEecC
Confidence 2222 479999999999999996
No 111
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.54 E-value=1.6e-06 Score=90.78 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=95.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCcEEEE-ecCC-----CCCCchhH------HhhchHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKF-NLPIFTF-IDTP-----GAFPGIDA------EERGQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~-~lPiV~l-vDs~-----Ga~~~~~~------e~~g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
..+++....+.+..+++.++.. .+-.|.| ...+ |+.+.+-. +...........+..+..+++|+|+.
T Consensus 23 ~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 102 (699)
T TIGR02440 23 MNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAA 102 (699)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4678999999999999877654 4555554 3333 33333211 00001122344556788889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcc--cEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQY--AIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~--A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
|.|.|+|||...+..||++||.++ ++|++ +.|..+....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 103 VnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~ 182 (699)
T TIGR02440 103 IHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDD 182 (699)
T ss_pred ECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcE
Confidence 999999999999888999999986 56665 345555555556555555555554 479999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 183 vv~ 185 (699)
T TIGR02440 183 VVP 185 (699)
T ss_pred ecC
Confidence 996
No 112
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.50 E-value=5.9e-06 Score=80.94 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=96.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------c-------hHHHHHHHHHHHhcCCCCE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------G-------QSEAIGHSIYVMSKLKVPL 192 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------g-------~~~~~~~~~~~~s~~~vP~ 192 (318)
.-.+++......+.++++..++ ..+-+|.|.-++.++. |-..... + .+.....+...+...++|+
T Consensus 62 ~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPv 141 (407)
T PLN02851 62 SLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPN 141 (407)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 3468999999999999987654 5677777765444433 1111100 0 1122334445566788999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcc
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLIN 262 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD 262 (318)
|++|.|.|.|||...+..||++|+++++.+++ +.|..+++....+..+.. +.+.. .+++.++.+.|+++
T Consensus 142 IA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA~~~GLa~ 220 (407)
T PLN02851 142 VAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEMIACGLAT 220 (407)
T ss_pred EEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHHHHCCCce
Confidence 99999999999999998999999999988777 346665555555443321 22222 47999999999999
Q ss_pred eeec
Q psy14493 263 KIIK 266 (318)
Q Consensus 263 ~ii~ 266 (318)
.+++
T Consensus 221 ~~v~ 224 (407)
T PLN02851 221 HYCL 224 (407)
T ss_pred eecC
Confidence 9996
No 113
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.48 E-value=2.7e-06 Score=89.20 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=98.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC-chhHHhh------------chHHHHHHHHHHHhcCCCCEE
Q psy14493 128 NFGMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDTPGAFP-GIDAEER------------GQSEAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 128 ~gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs~Ga~~-~~~~e~~------------g~~~~~~~~~~~~s~~~vP~I 193 (318)
.-.+++......+.++++.+.. ..+-+|.|.-++.++. |-....+ .........+..+..+++|+|
T Consensus 27 ~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvI 106 (714)
T TIGR02437 27 SVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTV 106 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 3467899999999999987754 4566677665443332 1111110 011223345567778899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
++|.|.|.|||.-....||++|+.++++|++ +-|..+....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 107 Aai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~ 186 (714)
T TIGR02437 107 AAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDA 186 (714)
T ss_pred EEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcE
Confidence 9999999999999988899999999998887 235555555555555555555554 489999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 187 vv~ 189 (714)
T TIGR02437 187 VVT 189 (714)
T ss_pred eeC
Confidence 996
No 114
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.47 E-value=3.2e-06 Score=88.90 Aligned_cols=138 Identities=14% Similarity=0.220 Sum_probs=95.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCC-Cc-EEEEecCCCCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKFN-LP-IFTFIDTPGAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~~-lP-iV~lvDs~Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
-.+++......+..+++.+++.. +- +|.+...++++. |-....+ .........+..+..+++|+|+.
T Consensus 35 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 114 (737)
T TIGR02441 35 VNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAA 114 (737)
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 36788999999999998876554 44 344455443433 1111111 01123345566778889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEccc--EEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYA--IYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A--~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
|.|.|.|||...+..||++||++++ ++++ +-|..+....+++..+...+.+.+ .+++.++++.|+||+
T Consensus 115 v~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~ 194 (737)
T TIGR02441 115 ISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQ 194 (737)
T ss_pred ECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeE
Confidence 9999999999998889999999984 5555 234444555555555555555554 479999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 195 vv~ 197 (737)
T TIGR02441 195 LVD 197 (737)
T ss_pred ecC
Confidence 997
No 115
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.43 E-value=2e-06 Score=76.93 Aligned_cols=134 Identities=20% Similarity=0.261 Sum_probs=93.3
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEKF--NLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~~--~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+.+|.+++..+..+.+.+...+.. .-||+..+||||..+.. .......+...+.|+++++.|.|
T Consensus 35 ~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~----------g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 35 ERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTA----------GDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred CeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHH----------HHHHHHHHHhcCCCcEEEEEeeh
Confidence 3444678888999999988888776654 57999999999965432 23334445555679999999999
Q ss_pred chhhhhhhcccc--EEEEEcccEEEEeChh--HH-----HHhh-hcc----------------c-cchHHHHHHh----c
Q psy14493 201 GSGGALAIAVSD--ITLMLQYAIYSVISPE--GC-----ASIL-WKT----------------S-KRASDAAEAL----G 249 (318)
Q Consensus 201 ~ggga~~~~~~D--~via~~~A~i~v~gP~--~~-----a~il-~~~----------------~-~~~~~a~e~~----~ 249 (318)
++.|++.+..+| .++|.|++.+.+-.|. +. ..+- ..+ . ...++..+.+ -
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~ 184 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKW 184 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcc
Confidence 999999987787 5899999999888775 21 1100 000 0 0001111111 2
Q ss_pred ccHHHHHHcCCcceeec
Q psy14493 250 LTADKLKSIGLINKIIK 266 (318)
Q Consensus 250 ~~a~~a~~~G~vD~ii~ 266 (318)
+++.+|.+.|+||+|++
T Consensus 185 lta~EA~e~GliD~I~~ 201 (207)
T PRK12553 185 LTAEEAKDYGLVDQIIT 201 (207)
T ss_pred ccHHHHHHcCCccEEcC
Confidence 69999999999999996
No 116
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.43 E-value=1e-05 Score=84.82 Aligned_cols=138 Identities=15% Similarity=0.193 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCC-CCCC-chhHHhh----------chHHHHHHHHHHHhcCCCCEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTP-GAFP-GIDAEER----------GQSEAIGHSIYVMSKLKVPLIST 195 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~-Ga~~-~~~~e~~----------g~~~~~~~~~~~~s~~~vP~Iav 195 (318)
..+++......+..+++.++.. .+-+|.|.-.+ +++. |-....+ .........+.++..+++|+|+.
T Consensus 28 ~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 107 (708)
T PRK11154 28 MNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAA 107 (708)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3578999999999999877644 46666665322 2222 2111110 01112233556777889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEccc--EEEE------eChhHHHHhhhccccchHHHHHHh----cccHHHHHHcCCcce
Q psy14493 196 IIGEGGSGGALAIAVSDITLMLQYA--IYSV------ISPEGCASILWKTSKRASDAAEAL----GLTADKLKSIGLINK 263 (318)
Q Consensus 196 V~G~~~ggga~~~~~~D~via~~~A--~i~v------~gP~~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ 263 (318)
|.|.|.|||...+..||++|+.+++ +|++ +-|..+....+++..+...+.+.+ .+++.++.+.|+||+
T Consensus 108 V~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~ 187 (708)
T PRK11154 108 IHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDD 187 (708)
T ss_pred ECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcE
Confidence 9999999999998889999999974 6665 235555555555555655555554 479999999999999
Q ss_pred eec
Q psy14493 264 IIK 266 (318)
Q Consensus 264 ii~ 266 (318)
+++
T Consensus 188 vv~ 190 (708)
T PRK11154 188 VVP 190 (708)
T ss_pred ecC
Confidence 996
No 117
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.42 E-value=3.4e-06 Score=75.10 Aligned_cols=134 Identities=21% Similarity=0.225 Sum_probs=90.1
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+.+|.+++..+..+.+-+...+. ..-||..++||||.....+ ......+...+.|+++++.|.|
T Consensus 31 ~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g----------~~I~d~i~~~~~~v~t~~~G~a 100 (200)
T PRK00277 31 ERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------LAIYDTMQFIKPDVSTICIGQA 100 (200)
T ss_pred CcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHH----------HHHHHHHHhcCCCEEEEEEeEe
Confidence 344567888888888888777766554 3579999999999654332 2233344555679999999999
Q ss_pred chhhhhhhcc--ccEEEEEcccEEEEeChhHHH----Hhhh-------c-----------cc-cchHHHHHHh----ccc
Q psy14493 201 GSGGALAIAV--SDITLMLQYAIYSVISPEGCA----SILW-------K-----------TS-KRASDAAEAL----GLT 251 (318)
Q Consensus 201 ~ggga~~~~~--~D~via~~~A~i~v~gP~~~a----~il~-------~-----------~~-~~~~~a~e~~----~~~ 251 (318)
+|.|++.+.. .+.++|.|++.+.+-.|.+.. +-+. + .. ...++..+.+ .++
T Consensus 101 aS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ls 180 (200)
T PRK00277 101 ASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMS 180 (200)
T ss_pred ccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcccc
Confidence 9999888654 357999999999887775321 0000 0 00 0001111111 279
Q ss_pred HHHHHHcCCcceeec
Q psy14493 252 ADKLKSIGLINKIIK 266 (318)
Q Consensus 252 a~~a~~~G~vD~ii~ 266 (318)
+.+|.+.|+||+|+.
T Consensus 181 a~EA~e~GliD~Ii~ 195 (200)
T PRK00277 181 AEEAKEYGLIDEVLT 195 (200)
T ss_pred HHHHHHcCCccEEee
Confidence 999999999999997
No 118
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=98.41 E-value=3.2e-06 Score=75.42 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhC-CCc-EEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccc
Q psy14493 134 PEGYRKAVRLMHIAEKF-NLP-IFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVS 211 (318)
Q Consensus 134 ~~~~~K~~r~~~~A~~~-~lP-iV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~ 211 (318)
+..++.+.+.++.+.+. ++- ||.-+||+|..+... ..+...+..+...++|+|+.+.|.|.|+|.+.+..|
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~-------~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aa 88 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVAS-------EEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAA 88 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHH-------HHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhC
Confidence 66788888888877544 343 556678888765432 234555667777789999999999999999998889
Q ss_pred cEEEEEcccEEEEeCh
Q psy14493 212 DITLMLQYAIYSVISP 227 (318)
Q Consensus 212 D~via~~~A~i~v~gP 227 (318)
|.++|.|++.++..|.
T Consensus 89 D~i~a~~~s~~g~iG~ 104 (208)
T cd07023 89 DKIVANPTTITGSIGV 104 (208)
T ss_pred CEEEECCCCeEEeCcE
Confidence 9999999998877655
No 119
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.40 E-value=4e-06 Score=72.11 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=69.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhh
Q psy14493 127 RNFGMAKPEGYRKAVRLMHIAEKF--NLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGG 204 (318)
Q Consensus 127 ~~gG~~~~~~~~K~~r~~~~A~~~--~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggg 204 (318)
+..|.+++..+..+.+.+..++.. .-||+..+||||..+... ......+...+.|+++++.|.|+++|
T Consensus 4 ~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~----------~~i~~~i~~~~~~v~~~~~g~aaS~~ 73 (162)
T cd07013 4 MLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAG----------MAIYDTIKFIKADVVTIIDGLAASMG 73 (162)
T ss_pred EEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHH----------HHHHHHHHhcCCCceEEEEeehhhHH
Confidence 456778888888888888776654 369999999999764322 22233344456799999999999999
Q ss_pred hhhhcccc--EEEEEcccEEEEeChh
Q psy14493 205 ALAIAVSD--ITLMLQYAIYSVISPE 228 (318)
Q Consensus 205 a~~~~~~D--~via~~~A~i~v~gP~ 228 (318)
++.+..+| ..++.|++.+.+-.|.
T Consensus 74 ~~i~~a~~~g~r~~~p~a~~~ih~~~ 99 (162)
T cd07013 74 SVIAMAGAKGKRFILPNAMMMIHQPW 99 (162)
T ss_pred HHHHHcCCCCcEEEecCEEEEEccCc
Confidence 99988888 6888899988876564
No 120
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=98.37 E-value=2e-07 Score=92.31 Aligned_cols=53 Identities=40% Similarity=0.847 Sum_probs=45.2
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhh-ccCccccccCCCCCCCCCChHHhhhhhc
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFC-NYKIQFYVFHINHGLSPSSDKWLIHCKN 317 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~-~~~~~~~~~~~~h~~~~~~~~w~~~~~~ 317 (318)
|.|+ +|+|||.||++||+.+..+.. ..+.++.++|+|||+|++|++|++||++
T Consensus 16 ~~il---vavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~ 69 (436)
T PRK10660 16 RQIL---VAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQ 69 (436)
T ss_pred CeEE---EEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHH
Confidence 6666 799999999999999887652 3356889999999999999999999874
No 121
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.37 E-value=6.6e-06 Score=83.60 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCC-CCC-chh---HHh------hchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPG-AFP-GID---AEE------RGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~G-a~~-~~~---~e~------~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
.+++....+.+..+++.+.. ..+-+|.|.-.++ ++. |-. .+. ..........+..+..+++|+|+.|
T Consensus 297 Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 376 (550)
T PRK08184 297 AWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALI 376 (550)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 68899999999999987763 5677777766442 222 211 000 0111222334567778899999999
Q ss_pred c-CCCchhh-hhhhccccEEEEE-------cccEEEE------eChhHHHHhhhccc-cchHHHHHHh------cccHHH
Q psy14493 197 I-GEGGSGG-ALAIAVSDITLML-------QYAIYSV------ISPEGCASILWKTS-KRASDAAEAL------GLTADK 254 (318)
Q Consensus 197 ~-G~~~ggg-a~~~~~~D~via~-------~~A~i~v------~gP~~~a~il~~~~-~~~~~a~e~~------~~~a~~ 254 (318)
. |.|+||| .-.+..||++||. ++++|++ +-|..+......+. .+...+.+++ .+++.+
T Consensus 377 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~e 456 (550)
T PRK08184 377 EPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADA 456 (550)
T ss_pred CCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHH
Confidence 7 9999999 7777779999999 8888777 34554444434433 4555555541 489999
Q ss_pred HHHcCCcceeec
Q psy14493 255 LKSIGLINKIIK 266 (318)
Q Consensus 255 a~~~G~vD~ii~ 266 (318)
+.+.|+|+++++
T Consensus 457 A~~~GLv~~vv~ 468 (550)
T PRK08184 457 AEELGLVTAAPD 468 (550)
T ss_pred HHHcCCcccccC
Confidence 999999999997
No 122
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.29 E-value=1.5e-05 Score=80.85 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCC-CC-chhH--Hh-------hchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGA-FP-GIDA--EE-------RGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga-~~-~~~~--e~-------~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
.+++....+.+..+++.+.+ ..+-+|.|.-.+.+ +. |-.. +. .......-+.+..+..+++|+|+.|
T Consensus 293 Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 293 NWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 77999999999999987763 56777877664433 22 1111 00 0111222235567888899999999
Q ss_pred -cCCCchhh-hhhhccccEEEE-------EcccEEEE------eChhHHHHhhhcccc-chHHH--HHHh----cccHHH
Q psy14493 197 -IGEGGSGG-ALAIAVSDITLM-------LQYAIYSV------ISPEGCASILWKTSK-RASDA--AEAL----GLTADK 254 (318)
Q Consensus 197 -~G~~~ggg-a~~~~~~D~via-------~~~A~i~v------~gP~~~a~il~~~~~-~~~~a--~e~~----~~~a~~ 254 (318)
.|.|+||| .-.+..||++|| .++++|++ +.|..+....+.+.. +...+ .+.+ .+++.+
T Consensus 373 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~e 452 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEE 452 (546)
T ss_pred CCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHH
Confidence 89999999 887778999999 78888877 235544444444433 43333 2222 489999
Q ss_pred HHHcCCcceeec
Q psy14493 255 LKSIGLINKIIK 266 (318)
Q Consensus 255 a~~~G~vD~ii~ 266 (318)
+.+.|+|+++++
T Consensus 453 A~~~Glv~~vv~ 464 (546)
T TIGR03222 453 AERLGLVTAAPD 464 (546)
T ss_pred HHHcCCcccccC
Confidence 999999999986
No 123
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.28 E-value=7.1e-06 Score=71.61 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=89.8
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHH--HhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIA--EKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A--~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+..|-+++..+..+..-+... ....-||..+++|||..+ .........+...+.|+.+++.|.|
T Consensus 16 ~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v----------~~g~~i~~~i~~~~~~v~t~~~G~a 85 (182)
T PF00574_consen 16 ERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDV----------DAGLAIYDAIRSSKAPVTTVVLGLA 85 (182)
T ss_dssp TTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCH----------HHHHHHHHHHHHSSSEEEEEEEEEE
T ss_pred CeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCcc----------HHHHHHHHHHHhcCCCeEEEEeCcc
Confidence 4455788999999998887655433 345679999999999553 3334455566677899999999999
Q ss_pred chhhhhhhccccE--EEEEcccEEEEeChhHH-----HHhhh--ccccc----------------hHHHHHHh----ccc
Q psy14493 201 GSGGALAIAVSDI--TLMLQYAIYSVISPEGC-----ASILW--KTSKR----------------ASDAAEAL----GLT 251 (318)
Q Consensus 201 ~ggga~~~~~~D~--via~~~A~i~v~gP~~~-----a~il~--~~~~~----------------~~~a~e~~----~~~ 251 (318)
.+.|++.+..++. .+|.|++.+.+-.|... ..+.- ..... .++..+.+ -++
T Consensus 86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~ 165 (182)
T PF00574_consen 86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLS 165 (182)
T ss_dssp ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEE
T ss_pred ccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCcccc
Confidence 9999999888887 69999998888666311 11100 00000 00111111 269
Q ss_pred HHHHHHcCCcceeec
Q psy14493 252 ADKLKSIGLINKIIK 266 (318)
Q Consensus 252 a~~a~~~G~vD~ii~ 266 (318)
|.+|++.|+||+|+.
T Consensus 166 a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 166 AEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHTSSSEEES
T ss_pred HHHHHHcCCCCEecc
Confidence 999999999999986
No 124
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.28 E-value=5.6e-05 Score=76.77 Aligned_cols=137 Identities=10% Similarity=0.026 Sum_probs=87.3
Q ss_pred CCCCHHHHHHHHHHHHHHH--hCCCcEEEEecC------CCCCCchhHHh-------hch-HHHH-HHHHHHHhcCCCCE
Q psy14493 130 GMAKPEGYRKAVRLMHIAE--KFNLPIFTFIDT------PGAFPGIDAEE-------RGQ-SEAI-GHSIYVMSKLKVPL 192 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~--~~~lPiV~lvDs------~Ga~~~~~~e~-------~g~-~~~~-~~~~~~~s~~~vP~ 192 (318)
.+++......+..+++... ...+.+|.|.-. .|+.+.+-... ... .... ......+..+++|+
T Consensus 43 Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPv 122 (546)
T TIGR03222 43 NSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF 122 (546)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 5788999999999988776 355778877632 23332211000 000 0001 11223445678999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcc--cEEEEe-------ChhHHHHhhhc--cccchHHHHHHh----cccHHHHHH
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQY--AIYSVI-------SPEGCASILWK--TSKRASDAAEAL----GLTADKLKS 257 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~--A~i~v~-------gP~~~a~il~~--~~~~~~~a~e~~----~~~a~~a~~ 257 (318)
|+.|.|.|+|||...+..||++|+.++ ++|++. .|..+...... ...+...+.+++ .+++.++++
T Consensus 123 IAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~ 202 (546)
T TIGR03222 123 LAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKE 202 (546)
T ss_pred EEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHH
Confidence 999999999999999989999999986 555541 13333322222 122333344443 479999999
Q ss_pred cCCcceeec
Q psy14493 258 IGLINKIIK 266 (318)
Q Consensus 258 ~G~vD~ii~ 266 (318)
.|+||++++
T Consensus 203 ~GLV~~vv~ 211 (546)
T TIGR03222 203 WRLVDEVVK 211 (546)
T ss_pred cCCceEEeC
Confidence 999999997
No 125
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.28 E-value=1.6e-05 Score=70.64 Aligned_cols=132 Identities=16% Similarity=0.117 Sum_probs=89.3
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHh-C-CCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCch
Q psy14493 125 IIRNFGMAKPEGYRKAVRLMHIAEK-F-NLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGS 202 (318)
Q Consensus 125 ~~~~gG~~~~~~~~K~~r~~~~A~~-~-~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~g 202 (318)
..+..|.+++..+.-+.+-+..++. . .-||+..+||||..+.. .......+...+.|+++++.|.|++
T Consensus 25 ~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~a----------g~aI~d~i~~~~~~V~t~v~G~AaS 94 (197)
T PRK14512 25 SIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDA----------GFAIFNMIRFVKPKVFTIGVGLVAS 94 (197)
T ss_pred EEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHH----------HHHHHHHHHhCCCCEEEEEEeeeHh
Confidence 3356677788777777776655554 3 48999999999965432 2333444555678999999999999
Q ss_pred hhhhhhccccE--EEEEcccEEEEeChhHHH----Hhhhccc---cc----------------hHHHHHHh----cccHH
Q psy14493 203 GGALAIAVSDI--TLMLQYAIYSVISPEGCA----SILWKTS---KR----------------ASDAAEAL----GLTAD 253 (318)
Q Consensus 203 gga~~~~~~D~--via~~~A~i~v~gP~~~a----~il~~~~---~~----------------~~~a~e~~----~~~a~ 253 (318)
.|++.+..+|. .++.|++.+.+.-|.+.. +-+.... .+ .+...+.+ -++|.
T Consensus 95 aaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~ 174 (197)
T PRK14512 95 AAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSS 174 (197)
T ss_pred HHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHH
Confidence 99999877774 789999999888775421 1110000 00 00011111 26999
Q ss_pred HHHHcCCcceeec
Q psy14493 254 KLKSIGLINKIIK 266 (318)
Q Consensus 254 ~a~~~G~vD~ii~ 266 (318)
+|.+.|+||+|++
T Consensus 175 EA~~yGliD~I~~ 187 (197)
T PRK14512 175 SAVKYGLVFEVVE 187 (197)
T ss_pred HHHHcCCccEeec
Confidence 9999999999996
No 126
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.27 E-value=1.1e-05 Score=71.66 Aligned_cols=135 Identities=17% Similarity=0.137 Sum_probs=93.2
Q ss_pred cchhhccCCCCCHHHHHHHHHHH-HHHHh-CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLM-HIAEK-FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~-~~A~~-~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++|..+.+|-+++..+..+..-+ .+..+ ..-||...++|||..+.. .......+...+.|+.+++.|-
T Consensus 29 ~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~----------g~aIyd~m~~~~~~V~Tv~~G~ 98 (200)
T CHL00028 29 RERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVIS----------GLAIYDTMQFVKPDVHTICLGL 98 (200)
T ss_pred cCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhh----------HHHHHHHHHhcCCCEEEEEEEe
Confidence 35566889999998888876544 44433 358999999999965443 2334455666678999999999
Q ss_pred Cchhhhhhhcccc--EEEEEcccEEEEeChhHH-----HHhhhccccch-------------------HHHHHHh----c
Q psy14493 200 GGSGGALAIAVSD--ITLMLQYAIYSVISPEGC-----ASILWKTSKRA-------------------SDAAEAL----G 249 (318)
Q Consensus 200 ~~ggga~~~~~~D--~via~~~A~i~v~gP~~~-----a~il~~~~~~~-------------------~~a~e~~----~ 249 (318)
|++.|++.++.+| .++|.|++++.+--|.+. ++-+....... ++..+.+ .
T Consensus 99 AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~ 178 (200)
T CHL00028 99 AASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVF 178 (200)
T ss_pred hHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcc
Confidence 9999999887777 689999999988766542 11110000000 0011111 2
Q ss_pred ccHHHHHHcCCcceeec
Q psy14493 250 LTADKLKSIGLINKIIK 266 (318)
Q Consensus 250 ~~a~~a~~~G~vD~ii~ 266 (318)
++|.+|.+.|+||+|+.
T Consensus 179 lta~EA~eyGliD~I~~ 195 (200)
T CHL00028 179 MSATEAKAYGIVDLVAV 195 (200)
T ss_pred CCHHHHHHcCCCcEEee
Confidence 79999999999999997
No 127
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.24 E-value=1.8e-05 Score=70.24 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=92.9
Q ss_pred cchhhccCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++|+.+.+|-+++..+..+...+..-+. ..-||...+||||..+..+ ......+...+.|+.+++.|-
T Consensus 24 ~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g----------~aIyd~m~~~~~~V~t~~~G~ 93 (196)
T PRK12551 24 RERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDG----------LGIFDTMQHVKPDVHTVCVGL 93 (196)
T ss_pred cCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhH----------HHHHHHHHhcCCCEEEEEEEE
Confidence 3556688999999999888877765543 2479999999999765432 233444555667999999999
Q ss_pred Cchhhhhhhcccc--EEEEEcccEEEEeChhHHHHhhhcccc----chH----------------------HHHHHh---
Q psy14493 200 GGSGGALAIAVSD--ITLMLQYAIYSVISPEGCASILWKTSK----RAS----------------------DAAEAL--- 248 (318)
Q Consensus 200 ~~ggga~~~~~~D--~via~~~A~i~v~gP~~~a~il~~~~~----~~~----------------------~a~e~~--- 248 (318)
|++.|++.++.+| ..+|.|+|++.+--|.+.+ +.... .++ +..+.+
T Consensus 94 AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd 170 (196)
T PRK12551 94 AASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA---RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRD 170 (196)
T ss_pred ehhHHHHHHhCCCCCceecCCCCEEEEecCCccc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcC
Confidence 9999998877666 4789999999987775321 11100 000 111111
Q ss_pred -cccHHHHHHcCCcceeec
Q psy14493 249 -GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 -~~~a~~a~~~G~vD~ii~ 266 (318)
.++|.+|.+.|+||+|++
T Consensus 171 ~~msa~EA~eyGliD~I~~ 189 (196)
T PRK12551 171 FFMSPSEAVEYGLIDLVID 189 (196)
T ss_pred cCCCHHHHHHcCCCcEEec
Confidence 379999999999999996
No 128
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=98.23 E-value=3.3e-05 Score=69.33 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCcEEEE-ecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhh
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLPIFTF-IDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALA 207 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lPiV~l-vDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~ 207 (318)
+.+++.....+.+.++.+.+. ++-.|.| ++++|..... ...+...+..+.. ++|+|+.+.|.|.|||.+.
T Consensus 20 ~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~-------~~~l~~~l~~~~~-~KpViA~v~g~a~s~gy~l 91 (214)
T cd07022 20 ASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAG-------VFELADAIRAARA-GKPIVAFVNGLAASAAYWI 91 (214)
T ss_pred CCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHH-------HHHHHHHHHHHhc-CCCEEEEECCchhhHHHHH
Confidence 445667788888888877654 5655555 7887754321 2334555555655 7999999999999999999
Q ss_pred hccccEEEEEcccEEEEeCh
Q psy14493 208 IAVSDITLMLQYAIYSVISP 227 (318)
Q Consensus 208 ~~~~D~via~~~A~i~v~gP 227 (318)
+..||+++|.|++.++..|.
T Consensus 92 A~~aD~i~a~~~a~~g~iG~ 111 (214)
T cd07022 92 ASAADRIVVTPTAGVGSIGV 111 (214)
T ss_pred HhcCCEEEEcCCCeEEeeeE
Confidence 98999999999988766554
No 129
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.21 E-value=2.2e-05 Score=70.81 Aligned_cols=132 Identities=15% Similarity=0.089 Sum_probs=93.1
Q ss_pred cchhhccCCCCCHHHHHHHHHHHHHHH--hCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLMHIAE--KFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~~~A~--~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++++.+.+|.++...+..+..-+-+-+ ..+-||...+||||..+..+ ......+...+.|+.+++.|-
T Consensus 53 ~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aG----------laIyd~m~~~~~~V~tv~~G~ 122 (221)
T PRK14514 53 MDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAG----------LGIYDTMQFISSDVATICTGM 122 (221)
T ss_pred hCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhH----------HHHHHHHHhcCCCEEEEEEEE
Confidence 467778999999999888876543322 23589999999999765432 223345555668999999999
Q ss_pred CchhhhhhhccccE--EEEEcccEEEEeChhHHHHhhhcccc----chHH----------------------HHHHh---
Q psy14493 200 GGSGGALAIAVSDI--TLMLQYAIYSVISPEGCASILWKTSK----RASD----------------------AAEAL--- 248 (318)
Q Consensus 200 ~~ggga~~~~~~D~--via~~~A~i~v~gP~~~a~il~~~~~----~~~~----------------------a~e~~--- 248 (318)
|++.|++.++.+|. .+|.|++++.+--|.+.+ ..... .+++ ..+.+
T Consensus 123 AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~---~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd 199 (221)
T PRK14514 123 AASMASVLLVAGTKGKRSALPHSRVMIHQPLGGA---QGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRD 199 (221)
T ss_pred ehhHHHHHHhcCCCCceeeCCCCEEEeccCCccc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcC
Confidence 99999999877875 899999999987775421 11100 0000 11111
Q ss_pred -cccHHHHHHcCCcceeec
Q psy14493 249 -GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 -~~~a~~a~~~G~vD~ii~ 266 (318)
.++|++|.+.|+||+|+.
T Consensus 200 ~wmtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 200 YWMTAQEAKEYGMIDEVLI 218 (221)
T ss_pred ccCCHHHHHHcCCccEEee
Confidence 279999999999999996
No 130
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.19 E-value=5.3e-05 Score=77.05 Aligned_cols=137 Identities=11% Similarity=0.066 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHHHH--hCCCcEEEEecCC-CCCC-chhHHhhc--------hH----HHHHH-HHHHHhcCCCCE
Q psy14493 130 GMAKPEGYRKAVRLMHIAE--KFNLPIFTFIDTP-GAFP-GIDAEERG--------QS----EAIGH-SIYVMSKLKVPL 192 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~--~~~lPiV~lvDs~-Ga~~-~~~~e~~g--------~~----~~~~~-~~~~~s~~~vP~ 192 (318)
.++++.....+..+++.+. ...+-+|.|.-.+ .++. |-....+. .. ..... ....+..+++|+
T Consensus 47 Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPv 126 (550)
T PRK08184 47 NSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKF 126 (550)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4789999999999998876 3467777776432 2222 21111100 00 01111 223455678999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcc--cEEEE-----eC--hhHHHHhhhc--cccchHHHHHHh----cccHHHHHH
Q psy14493 193 ISTIIGEGGSGGALAIAVSDITLMLQY--AIYSV-----IS--PEGCASILWK--TSKRASDAAEAL----GLTADKLKS 257 (318)
Q Consensus 193 IavV~G~~~ggga~~~~~~D~via~~~--A~i~v-----~g--P~~~a~il~~--~~~~~~~a~e~~----~~~a~~a~~ 257 (318)
|+.|.|.|+|||...+..||++|+.++ ++|++ .| |..+...... .......+.+.+ .+++.++++
T Consensus 127 IAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~ 206 (550)
T PRK08184 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVD 206 (550)
T ss_pred EEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHH
Confidence 999999999999999999999999987 66654 12 4333322222 222333333433 489999999
Q ss_pred cCCcceeec
Q psy14493 258 IGLINKIIK 266 (318)
Q Consensus 258 ~G~vD~ii~ 266 (318)
.|+||++++
T Consensus 207 ~GLVd~vv~ 215 (550)
T PRK08184 207 WRLVDEVVK 215 (550)
T ss_pred cCCccEeeC
Confidence 999999996
No 131
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.16 E-value=3.5e-05 Score=68.08 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=86.5
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHH--hCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAE--KFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~--~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+.+|.++...+..+..-+...+ ...-||+..+||||..+..+ ......+...+.|+.+++.|.|
T Consensus 26 ~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g----------~~I~d~l~~~~~~v~t~~~G~A 95 (191)
T TIGR00493 26 ERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAG----------LAIYDTMQFIKPDVSTICIGQA 95 (191)
T ss_pred CeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHH----------HHHHHHHHhcCCCEEEEEEEee
Confidence 34446778888877777665554443 23579999999999765432 2223344445568889999999
Q ss_pred chhhhhhhccc--cEEEEEcccEEEEeChhHHHHhhhccccc--------------------------hHHHHHHh----
Q psy14493 201 GSGGALAIAVS--DITLMLQYAIYSVISPEGCASILWKTSKR--------------------------ASDAAEAL---- 248 (318)
Q Consensus 201 ~ggga~~~~~~--D~via~~~A~i~v~gP~~~a~il~~~~~~--------------------------~~~a~e~~---- 248 (318)
++.|++.+..+ +.++|.|+|.+.+-.|.+.. +..... .++..+.+
T Consensus 96 aSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~---~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~ 172 (191)
T TIGR00493 96 ASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF 172 (191)
T ss_pred ccHHHHHHhcCCCCcEEecCCceEEEecCcccc---cCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 99888876544 46899999999998775321 111000 00011111
Q ss_pred cccHHHHHHcCCcceeec
Q psy14493 249 GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 249 ~~~a~~a~~~G~vD~ii~ 266 (318)
.+++.+|.+.|+||+|+.
T Consensus 173 ~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCcHHHHHHcCCccEEec
Confidence 269999999999999985
No 132
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.15 E-value=1.6e-05 Score=68.94 Aligned_cols=96 Identities=26% Similarity=0.284 Sum_probs=73.4
Q ss_pred chhhccCCCCCHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 123 ERIIRNFGMAKPEGYRKAVRLMHIAEKF--NLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 123 ~~~~~~gG~~~~~~~~K~~r~~~~A~~~--~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
++..+..|-+++..+..+...+..+... .-||+..+||||..+..+. .+... +...+.|+.+++.|.|
T Consensus 9 ~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~-------~i~~~---l~~~~~~v~t~~~g~a 78 (171)
T cd07017 9 ERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGL-------AIYDT---MQYIKPPVSTICLGLA 78 (171)
T ss_pred CcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHH-------HHHHH---HHhcCCCEEEEEEeEe
Confidence 3445677888888888888887776654 3699999999998654322 23333 3344689999999999
Q ss_pred chhhhhhhcccc--EEEEEcccEEEEeChh
Q psy14493 201 GSGGALAIAVSD--ITLMLQYAIYSVISPE 228 (318)
Q Consensus 201 ~ggga~~~~~~D--~via~~~A~i~v~gP~ 228 (318)
++.|++.++.+| .++|.|+|.+.+-.|.
T Consensus 79 aS~~~~i~~~g~~~~r~~~~~a~~~~h~~~ 108 (171)
T cd07017 79 ASMGALLLAAGTKGKRYALPNSRIMIHQPL 108 (171)
T ss_pred hhHHHHHHHcCCCCCEEEccchHHHHcCCC
Confidence 999999988899 7999999988776664
No 133
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=98.12 E-value=3.8e-05 Score=68.60 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhC-C-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccE
Q psy14493 136 GYRKAVRLMHIAEKF-N-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDI 213 (318)
Q Consensus 136 ~~~K~~r~~~~A~~~-~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~ 213 (318)
+++.+.+.++.+.+. + ..||.-+||+|..+... ..+...+..+. .++|+++.+.|.|.|+|.+.+..||.
T Consensus 14 s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~-------~~l~~~i~~~~-~~kpvia~v~g~a~s~g~~la~aaD~ 85 (207)
T TIGR00706 14 SPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVAS-------EEIYEKLKKLK-AKKPVVASMGGVAASGGYYIAMAADE 85 (207)
T ss_pred CHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHH-------HHHHHHHHHhc-CCCCEEEEECCccchHHHHHHhcCCE
Confidence 456677777766543 3 46788889988765422 33344444444 35999999999999999999888999
Q ss_pred EEEEcccEEEEeCh
Q psy14493 214 TLMLQYAIYSVISP 227 (318)
Q Consensus 214 via~~~A~i~v~gP 227 (318)
++|.|++.++..|+
T Consensus 86 i~a~p~a~vg~iGv 99 (207)
T TIGR00706 86 IVANPGTITGSIGV 99 (207)
T ss_pred EEECCCCeEEeeeE
Confidence 99999987776555
No 134
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.07 E-value=9e-05 Score=65.94 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=91.7
Q ss_pred cchhhccCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAVRLMHIAEK--FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~r~~~~A~~--~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
+++..+.+|.+.++.+.-++.-+-.-+. ..-||...++|||..+..+ ......+...+-|+.+++.|-
T Consensus 26 ~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~G----------laIyd~m~~~~~~V~Ti~~G~ 95 (201)
T PRK14513 26 KDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAG----------LAIYDTMRYIKAPVSTICVGI 95 (201)
T ss_pred hCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhH----------HHHHHHHHhcCCCEEEEEEee
Confidence 3556688899999988888655544333 2479999999999654432 333444555667999999999
Q ss_pred CchhhhhhhccccE--EEEEcccEEEEeChhHHH----Hhhhccc-------------------cchHHHHHHh----cc
Q psy14493 200 GGSGGALAIAVSDI--TLMLQYAIYSVISPEGCA----SILWKTS-------------------KRASDAAEAL----GL 250 (318)
Q Consensus 200 ~~ggga~~~~~~D~--via~~~A~i~v~gP~~~a----~il~~~~-------------------~~~~~a~e~~----~~ 250 (318)
|++.|++.+..+|. ++|.|+|++.+=-|.+.. +-+.... ...++..+.+ .+
T Consensus 96 AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~m 175 (201)
T PRK14513 96 AMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFM 175 (201)
T ss_pred ehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCccc
Confidence 99999988777775 899999999887775321 0000000 0001111111 27
Q ss_pred cHHHHHHcCCcceeec
Q psy14493 251 TADKLKSIGLINKIIK 266 (318)
Q Consensus 251 ~a~~a~~~G~vD~ii~ 266 (318)
+|.+|.+.|+||+|++
T Consensus 176 sa~EA~eyGliD~I~~ 191 (201)
T PRK14513 176 SPEEAKAYGLIDSVIE 191 (201)
T ss_pred CHHHHHHcCCCcEEec
Confidence 9999999999999997
No 135
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=8.9e-05 Score=72.31 Aligned_cols=138 Identities=22% Similarity=0.286 Sum_probs=100.2
Q ss_pred cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHH
Q psy14493 106 NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYV 184 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~ 184 (318)
.+.+|.|+--| |.+++..+.-+.|.++.|.+.+ -.+|...||||-... ..-+.+.+
T Consensus 24 ~~~~v~vi~i~-------------g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl~~----------sm~~iv~~ 80 (436)
T COG1030 24 AEKKVYVIEID-------------GAIDPASADYLQRALQSAEEENAAAVVLELDTPGGLLD----------SMRQIVRA 80 (436)
T ss_pred cCCeEEEEEec-------------CccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCchHH----------HHHHHHHH
Confidence 55677777766 6789999999999999999998 899999999997643 23445667
Q ss_pred HhcCCCCEEEEEcCC---CchhhhhhhccccEEEEEcccEEEEeChhHHH--Hhhhcc---------------ccchHHH
Q psy14493 185 MSKLKVPLISTIIGE---GGSGGALAIAVSDITLMLQYAIYSVISPEGCA--SILWKT---------------SKRASDA 244 (318)
Q Consensus 185 ~s~~~vP~IavV~G~---~~ggga~~~~~~D~via~~~A~i~v~gP~~~a--~il~~~---------------~~~~~~a 244 (318)
+...++|++..|.=+ |.+.|+|..-.||+..|.|++.++..-|-... +.-... ..+-.+.
T Consensus 81 i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ 160 (436)
T COG1030 81 ILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTW 160 (436)
T ss_pred HHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHH
Confidence 888899988888855 78889999888999999999888876552111 000000 0000111
Q ss_pred HHHh-----cccHHHHHHcCCcceeec
Q psy14493 245 AEAL-----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 245 ~e~~-----~~~a~~a~~~G~vD~ii~ 266 (318)
++.+ ..++.++.+.|+||-+-.
T Consensus 161 ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 161 AERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred HHHHhhhccCCChhHHHhcCccccccC
Confidence 2221 369999999999998875
No 136
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=5.5e-06 Score=77.51 Aligned_cols=51 Identities=35% Similarity=0.404 Sum_probs=44.2
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhhhhc
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~~~~ 317 (318)
+.|+ +|+|||.||.+||+.+..+... ..+.++|+|||++..++.|..+|+.
T Consensus 22 ~~il---VavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~~~~~~~~~~~~ 72 (298)
T COG0037 22 YKIL---VAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRGYSDQEAELVEK 72 (298)
T ss_pred CeEE---EEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCCccchHHHHHHH
Confidence 5555 7999999999999998887655 6788999999999888999998864
No 137
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=97.98 E-value=3.1e-05 Score=68.79 Aligned_cols=137 Identities=19% Similarity=0.268 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCcEEEEecC---CCCCCchhHH-hhch---H--------HHHHHHHHHHhcCCCCEE
Q psy14493 130 GMAKPEGYRKAVRLMHIAEK-FNLPIFTFIDT---PGAFPGIDAE-ERGQ---S--------EAIGHSIYVMSKLKVPLI 193 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~-~~lPiV~lvDs---~Ga~~~~~~e-~~g~---~--------~~~~~~~~~~s~~~vP~I 193 (318)
.+..|.....+.++...|.. .++-+|.|.-. .-++.+-+.. .+|. + -.+......+...+.|+|
T Consensus 41 NAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpVi 120 (282)
T COG0447 41 NAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVI 120 (282)
T ss_pred ccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceE
Confidence 45678788888888887754 56888888732 1122211111 1111 1 144555666777899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHH-------HHhhhccccchHHHHHHh----cccHHHHHHcCCcc
Q psy14493 194 STIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGC-------ASILWKTSKRASDAAEAL----GLTADKLKSIGLIN 262 (318)
Q Consensus 194 avV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~-------a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD 262 (318)
++|.|-++|||-.....||+.|+.++|.++-+||..+ ++.+.+. .+.+.+.|.. ..++++++++|+|+
T Consensus 121 A~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~-VGqKkArEIwfLcR~Y~A~eal~MGlVN 199 (282)
T COG0447 121 AMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARI-VGQKKAREIWFLCRQYDAEEALDMGLVN 199 (282)
T ss_pred EEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHH-hhhhhhHHhhhhhhhccHHHHHhcCcee
Confidence 9999999999988888899999999999999999753 3444432 3333444432 37999999999999
Q ss_pred eeecC
Q psy14493 263 KIIKE 267 (318)
Q Consensus 263 ~ii~~ 267 (318)
.|++.
T Consensus 200 ~Vvp~ 204 (282)
T COG0447 200 TVVPH 204 (282)
T ss_pred eeccH
Confidence 99973
No 138
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.93 E-value=9.9e-05 Score=70.24 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc
Q psy14493 131 MAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV 210 (318)
Q Consensus 131 ~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~ 210 (318)
.++.....+..+.+... ..--+||..+||||..+.. ...+++.+..+...+ |+++.|-+-|++||.|.++.
T Consensus 79 ~~~~~~~~~~l~~~~~~-~~vk~vvL~inSPGG~v~a-------s~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~a 149 (317)
T COG0616 79 FIGGDDIEEILRAARAD-PSVKAVVLRINSPGGSVVA-------SELIARALKRLRAKK-PVVVSVGGYAASGGYYIALA 149 (317)
T ss_pred cccHHHHHHHHHHHhcC-CCCceEEEEEECcCCchhH-------HHHHHHHHHHHhhcC-CEEEEECCeecchhhhhhcc
Confidence 33455555555544432 2336899999999976542 356788888888886 99999999999999999999
Q ss_pred ccEEEEEcccEEEEeCh
Q psy14493 211 SDITLMLQYAIYSVISP 227 (318)
Q Consensus 211 ~D~via~~~A~i~v~gP 227 (318)
+|.++|.|++.++-+|+
T Consensus 150 Ad~I~a~p~si~GSIGV 166 (317)
T COG0616 150 ADKIVADPSSITGSIGV 166 (317)
T ss_pred CCEEEecCCceeeecee
Confidence 99999999988887776
No 139
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=97.90 E-value=0.00014 Score=65.74 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCc-EEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhh
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKF-NLP-IFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALA 207 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~-~lP-iV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~ 207 (318)
+..+..+...+.+.++.|.+. ++- ||.-+|++|+.... . ..+...+..+...++|+|+.+-+ +.+||.|.
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~-~------~el~~~i~~~~~~~kpVia~~~~-~~sggy~l 95 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAK-L------EELRQALERFRASGKPVIAYADG-YSQGQYYL 95 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHH-H------HHHHHHHHHHHHhCCeEEEEeCC-CCchhhhh
Confidence 444567788888888887665 444 55556888883322 2 23455566666567999999887 77888888
Q ss_pred hccccEEEEEcccEEEEeCh
Q psy14493 208 IAVSDITLMLQYAIYSVISP 227 (318)
Q Consensus 208 ~~~~D~via~~~A~i~v~gP 227 (318)
+..||.++|.|.+.++..|.
T Consensus 96 asaad~I~a~p~~~vg~iGv 115 (222)
T cd07018 96 ASAADEIYLNPSGSVELTGL 115 (222)
T ss_pred hhhCCEEEECCCceEEeecc
Confidence 88899999999999988775
No 140
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.88 E-value=0.00017 Score=63.79 Aligned_cols=132 Identities=21% Similarity=0.234 Sum_probs=85.9
Q ss_pred ccCCCCCHHHHHHHHHHH-HH-HHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhh
Q psy14493 127 RNFGMAKPEGYRKAVRLM-HI-AEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGG 204 (318)
Q Consensus 127 ~~gG~~~~~~~~K~~r~~-~~-A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggg 204 (318)
+.+|-++...+..+...+ .+ ++...-||...++|||..+..+ +.....+...+.|+.++++|-+.+.|
T Consensus 31 ~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG----------~AIydtm~~ik~~V~ti~~G~AaSmg 100 (200)
T COG0740 31 FLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------LAIYDTMQFIKPPVSTICMGQAASMG 100 (200)
T ss_pred EEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh----------HHHHHHHHhcCCCeEEEEecHHHhHH
Confidence 455666666455554444 33 2334689999999999766543 22334455567899999999999999
Q ss_pred hhhhccccEE--EEEcccEEEEeChhHHHHhhhccc-cchHH----------------------HHHH----hcccHHHH
Q psy14493 205 ALAIAVSDIT--LMLQYAIYSVISPEGCASILWKTS-KRASD----------------------AAEA----LGLTADKL 255 (318)
Q Consensus 205 a~~~~~~D~v--ia~~~A~i~v~gP~~~a~il~~~~-~~~~~----------------------a~e~----~~~~a~~a 255 (318)
+..+..++.- ++.|+|+|.+=-|.+++.=...+. ..+.+ ..+. ..+++.++
T Consensus 101 s~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA 180 (200)
T COG0740 101 SVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEA 180 (200)
T ss_pred HHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHH
Confidence 9987767765 999999999877764221000000 00111 0111 13799999
Q ss_pred HHcCCcceeecCc
Q psy14493 256 KSIGLINKIIKEP 268 (318)
Q Consensus 256 ~~~G~vD~ii~~p 268 (318)
.+.|+||.|+...
T Consensus 181 ~~yGLiD~V~~~~ 193 (200)
T COG0740 181 KEYGLIDKVIESR 193 (200)
T ss_pred HHcCCcceecccc
Confidence 9999999999743
No 141
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=97.87 E-value=8.6e-05 Score=66.50 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhC-CCcE-EEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcccc
Q psy14493 135 EGYRKAVRLMHIAEKF-NLPI-FTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSD 212 (318)
Q Consensus 135 ~~~~K~~r~~~~A~~~-~lPi-V~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D 212 (318)
.++.-+.+.++.+.+. ++-. |.-++|+|..+.... .+...+..+...++|+|+.+.|.|.|+|.+.+..||
T Consensus 21 ~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~-------~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD 93 (211)
T cd07019 21 VGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASE-------VIRAELAAARAAGKPVVVSAGGAAASGGYWISTPAN 93 (211)
T ss_pred cCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHH-------HHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCC
Confidence 3567777778777655 5554 444899998765432 223445566667899999999999999999988999
Q ss_pred EEEEEcccEEEEeC
Q psy14493 213 ITLMLQYAIYSVIS 226 (318)
Q Consensus 213 ~via~~~A~i~v~g 226 (318)
+++|.|++.++..|
T Consensus 94 ~i~a~~~a~~gsiG 107 (211)
T cd07019 94 YIVANPSTLTGSIG 107 (211)
T ss_pred EEEEcCCCEEEEeE
Confidence 99999998887766
No 142
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.79 E-value=0.00024 Score=64.06 Aligned_cols=143 Identities=18% Similarity=0.183 Sum_probs=87.4
Q ss_pred chhhccCCCCCHH----------HHHHHH-HHHHHHHh-CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCC
Q psy14493 123 ERIIRNFGMAKPE----------GYRKAV-RLMHIAEK-FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKV 190 (318)
Q Consensus 123 ~~~~~~gG~~~~~----------~~~K~~-r~~~~A~~-~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~v 190 (318)
+|+.+.||-+.+. .+..+. .++-+..+ ..-||-.+++|||...-.+ +..|...........+...+-
T Consensus 30 ~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G-~~iG~v~~glaIyD~m~~ik~ 108 (222)
T PRK12552 30 ERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTG-DAIGFETEAFAICDTMRYIKP 108 (222)
T ss_pred CCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccc-ccccccccHHHHHHHHHhcCC
Confidence 3444566666555 555554 33344333 3589999999999654222 111222233334444555567
Q ss_pred CEEEEEcCCCchhhhhhhccccE--EEEEcccEEEEeChhHHH----Hhhhcccc---c----------------hHHHH
Q psy14493 191 PLISTIIGEGGSGGALAIAVSDI--TLMLQYAIYSVISPEGCA----SILWKTSK---R----------------ASDAA 245 (318)
Q Consensus 191 P~IavV~G~~~ggga~~~~~~D~--via~~~A~i~v~gP~~~a----~il~~~~~---~----------------~~~a~ 245 (318)
|+.++++|-|++.+++.++.+|. .+|.|+|++.+=-|.+.+ +=+..... + .++..
T Consensus 109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~ 188 (222)
T PRK12552 109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLS 188 (222)
T ss_pred CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 89999999999999998877775 789999999886665321 10000000 0 00111
Q ss_pred HHh----cccHHHHHHcCCcceeec
Q psy14493 246 EAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 246 e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+.+ .++|.+|.+.|+||+|+.
T Consensus 189 ~d~~rd~wmsA~EA~eyGliD~Ii~ 213 (222)
T PRK12552 189 KDTDRMFYLTPQEAKEYGLIDRVLE 213 (222)
T ss_pred HHhcCCCcCCHHHHHHcCCCcEEec
Confidence 111 279999999999999997
No 143
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.71 E-value=0.00026 Score=72.73 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhCC--CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccE
Q psy14493 136 GYRKAVRLMHIAEKFN--LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDI 213 (318)
Q Consensus 136 ~~~K~~r~~~~A~~~~--lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~ 213 (318)
+...+.+.++.|.+.. -.||.-+||||...... ..+.+.+..+...++|+|+.+-|-|++||.|.+..||.
T Consensus 330 ~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as-------e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~ 402 (584)
T TIGR00705 330 GGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS-------EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADY 402 (584)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH-------HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCE
Confidence 4456666676665543 47899999999644321 23344555566667999999999999999999999999
Q ss_pred EEEEcccEEE
Q psy14493 214 TLMLQYAIYS 223 (318)
Q Consensus 214 via~~~A~i~ 223 (318)
++|.|++.++
T Consensus 403 I~a~p~t~~G 412 (584)
T TIGR00705 403 IVASPNTITG 412 (584)
T ss_pred EEECCCCeee
Confidence 9999997653
No 144
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.67 E-value=0.00061 Score=64.96 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcc
Q psy14493 140 AVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY 219 (318)
Q Consensus 140 ~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~ 219 (318)
+..+++.|... --||.-+||||..+... +.++..+..+...++|+++.+-+-|++||.|+++.||.++|.|.
T Consensus 113 i~a~l~~A~~~-~aVvLridSpGG~v~~s-------~~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~ 184 (330)
T PRK11778 113 ITAILAVAKPG-DEVLLRLESPGGVVHGY-------GLAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPF 184 (330)
T ss_pred HHHHHHhccCC-CeEEEEEeCCCCchhHH-------HHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCC
Confidence 33344445433 35999999999876432 22233355566677999999999999999999989999999999
Q ss_pred cEEEEeCh
Q psy14493 220 AIYSVISP 227 (318)
Q Consensus 220 A~i~v~gP 227 (318)
+.++.+|.
T Consensus 185 a~vGSIGV 192 (330)
T PRK11778 185 AIVGSIGV 192 (330)
T ss_pred CeEEeeee
Confidence 87777654
No 145
>KOG0840|consensus
Probab=97.65 E-value=0.00025 Score=64.42 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=95.3
Q ss_pred cchhhccCCCCCHHHHHHHH-HHHHH-HHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q psy14493 122 NERIIRNFGMAKPEGYRKAV-RLMHI-AEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199 (318)
Q Consensus 122 ~~~~~~~gG~~~~~~~~K~~-r~~~~-A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~ 199 (318)
++++.+.|+.+.+..+.-+. .++-+ ++....||..+++|||.-...+ ......|.-+.-|+-++.+|-
T Consensus 91 reRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtag----------lAIYDtMq~ik~~V~Tic~G~ 160 (275)
T KOG0840|consen 91 RERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAG----------LAIYDTMQYIKPDVSTICVGL 160 (275)
T ss_pred HhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchh----------hhHHHHHHhhCCCceeeehhh
Confidence 46788999999998777664 44444 4566799999999999877432 222344555667999999999
Q ss_pred Cchhhhhhhcc--ccEEEEEcccEEEEeChhHHHHhhhccc-cchHHHH----------------------HHh----cc
Q psy14493 200 GGSGGALAIAV--SDITLMLQYAIYSVISPEGCASILWKTS-KRASDAA----------------------EAL----GL 250 (318)
Q Consensus 200 ~~ggga~~~~~--~D~via~~~A~i~v~gP~~~a~il~~~~-~~~~~a~----------------------e~~----~~ 250 (318)
+++-|++..+. --..++.|++++.+=-|.+++.=-..+. ..++|+. +.+ .+
T Consensus 161 Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fm 240 (275)
T KOG0840|consen 161 AASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFM 240 (275)
T ss_pred HHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccC
Confidence 99999998754 3478899999999877765432111110 1111110 111 37
Q ss_pred cHHHHHHcCCcceeecCcc
Q psy14493 251 TADKLKSIGLINKIIKEPI 269 (318)
Q Consensus 251 ~a~~a~~~G~vD~ii~~p~ 269 (318)
+|.+|.+.|+||.|++.|.
T Consensus 241 sa~EA~eyGliD~v~~~p~ 259 (275)
T KOG0840|consen 241 SAEEAKEYGLIDKVIDHPP 259 (275)
T ss_pred CHHHHHHhcchhhhhcCCc
Confidence 9999999999999998653
No 146
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.64 E-value=0.00074 Score=62.28 Aligned_cols=88 Identities=22% Similarity=0.239 Sum_probs=70.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc
Q psy14493 130 GMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIA 209 (318)
Q Consensus 130 G~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~ 209 (318)
..++......+.|.++.+.+.+ ||..+++|||..+.. ...+++. +.....|+.++|-..|.++|++.+.
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~-~IdLii~TpGG~v~A-------A~~I~~~---l~~~~~~v~v~VP~~A~SAGTlIAL 138 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDK-PIDLIIHTPGGLVDA-------AEQIARA---LREHPAKVTVIVPHYAMSAGTLIAL 138 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCC-ceEEEEECCCCcHHH-------HHHHHHH---HHhCCCCEEEEECcccccHHHHHHH
Confidence 5567788889999999886654 999999999976532 1234443 4445689999999999999999998
Q ss_pred cccEEEEEcccEEEEeChh
Q psy14493 210 VSDITLMLQYAIYSVISPE 228 (318)
Q Consensus 210 ~~D~via~~~A~i~v~gP~ 228 (318)
.||-++|.|+|.++...|.
T Consensus 139 aADeIvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 139 AADEIVMGPGAVLGPIDPQ 157 (285)
T ss_pred hCCeEEECCCCccCCCCcc
Confidence 9999999999998887773
No 147
>KOG1682|consensus
Probab=97.47 E-value=0.00079 Score=59.41 Aligned_cols=148 Identities=18% Similarity=0.214 Sum_probs=91.7
Q ss_pred cCEEEEEEeecCCCCccchhhccCCCCCHHHHHH-HHHHHHHHHhCCCcEEEEecCC-----CCCCchhHHhhc------
Q psy14493 106 NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRK-AVRLMHIAEKFNLPIFTFIDTP-----GAFPGIDAEERG------ 173 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K-~~r~~~~A~~~~lPiV~lvDs~-----Ga~~~~~~e~~g------ 173 (318)
||..=.++.|++++ .+++-..... ...+....+...+-.|.+..-+ |-.+-+-.+..|
T Consensus 40 ~gvR~i~l~npKk~----------NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~hae 109 (287)
T KOG1682|consen 40 NGVREITLNNPKKL----------NTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAE 109 (287)
T ss_pred cceeeeeecCcccc----------chhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHH
Confidence 55565667777764 2333322222 2233344455567777776533 333322222222
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChh--------HHHHhhhccccchHHHH
Q psy14493 174 QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPE--------GCASILWKTSKRASDAA 245 (318)
Q Consensus 174 ~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~--------~~a~il~~~~~~~~~a~ 245 (318)
.+......+..+...+||+|+-|.|-+++.|....++||.+++++++.|++-|-. |.+ +.+ ......++
T Consensus 110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA--laR-avpRkva~ 186 (287)
T KOG1682|consen 110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA--LAR-AVPRKVAA 186 (287)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh--Hhh-hcchhHHH
Confidence 2345566777788899999999999999999999999999999988877653322 111 111 11112333
Q ss_pred HHh----cccHHHHHHcCCcceeec
Q psy14493 246 EAL----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 246 e~~----~~~a~~a~~~G~vD~ii~ 266 (318)
+++ +++.++++..|++..+++
T Consensus 187 ~ML~Tg~Pi~~eeAl~sGlvskvVp 211 (287)
T KOG1682|consen 187 YMLMTGLPITGEEALISGLVSKVVP 211 (287)
T ss_pred HHHHhCCCCchHHHHHhhhhhhcCC
Confidence 443 589999999999999996
No 148
>KOG0368|consensus
Probab=97.41 E-value=0.00023 Score=77.31 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=104.1
Q ss_pred CCcEEEEEEEE------cCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchh
Q psy14493 95 DLSIIGVLARI------NGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGID 168 (318)
Q Consensus 95 ~~~vVtG~g~i------~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~ 168 (318)
+.|+|.=.-++ .||.+.||+||-| +.-|+.||..-.-..++-++|.+.+||-|++.-..|+++|..
T Consensus 1527 ~~GMVAw~~~~~TpEyP~Gr~~iVIgNDiT--------fqiGSFGp~ED~lF~~aselAR~~~iPrIylaaNSGARIGlA 1598 (2196)
T KOG0368|consen 1527 SCGMVAWKLTVKTPEYPEGRDLIVIGNDVT--------FQIGSFGPREDLLFLAASELAREKGIPRIYLAANSGARIGLA 1598 (2196)
T ss_pred cceeEEEEEEecCCCCCCCceEEEEeccce--------EeccCCCChHHHHHHHHHHHHHhcCCCeEEEeccCccccccH
Confidence 35676555555 7999999999998 699999999999999999999999999999999999999865
Q ss_pred HHhhch------------------------H-----------------------------------------HHHHHHHH
Q psy14493 169 AEERGQ------------------------S-----------------------------------------EAIGHSIY 183 (318)
Q Consensus 169 ~e~~g~------------------------~-----------------------------------------~~~~~~~~ 183 (318)
.|.... + +.|+-...
T Consensus 1599 eei~~lfkVaw~d~~~P~kgF~YlYlt~ed~~ri~~~~v~~e~~~~~GE~R~~I~~IiGkeeglGVEnL~GSGlIAGetS 1678 (2196)
T KOG0368|consen 1599 EEIKPLFKVAWVDEDDPEKGFQYLYLTPEDYERIGSSVVHCEVVEESGEERLKIKAIIGKEEGIGVENLRGSGLIAGETS 1678 (2196)
T ss_pred HHHHHHheeeccCCCCcCCCceEEEECHHHHHHhhcccceeEEEeecCcceEEEEEEecccccccceeccccccccchhh
Confidence 543210 0 11111111
Q ss_pred HHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhHHHHhhhc
Q psy14493 184 VMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWK 236 (318)
Q Consensus 184 ~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~~a~il~~ 236 (318)
..- ..+|+|+.|.|.+.|-|||..-++..+|..+++.+-++|.+.--.+|.+
T Consensus 1679 rAY-~ei~T~t~VT~RsVGIGAYlvRLgqR~IQve~~~iILTGa~ALNklLGr 1730 (2196)
T KOG0368|consen 1679 RAY-NEIFTITLVTGRSVGIGAYLARLGQRIIQVEDQHIILTGASALNKLLGR 1730 (2196)
T ss_pred hhh-hccceEEEEecceeeHHHHHHHHHHHHHHhcCCceEEeCHHHHHHHhcc
Confidence 111 2489999999999999999999999999999999999998765555543
No 149
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=97.30 E-value=0.00012 Score=57.88 Aligned_cols=45 Identities=33% Similarity=0.421 Sum_probs=38.3
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhhhhc
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~~~~ 317 (318)
+++|||.||.++++.+.++. .++.++|+||+++++++.|..+|+.
T Consensus 3 v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (103)
T cd01986 3 VAFSGGKDSSVAAALLKKLG----YQVIAVTVDHGISPRLEDAKEIAKE 47 (103)
T ss_pred EEEeCcHHHHHHHHHHHHhC----CCEEEEEEcCCCcccHHHHHHHHHH
Confidence 58999999999999887652 2678999999999989999998863
No 150
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=97.22 E-value=0.00028 Score=65.15 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=38.4
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccC--ccccccCCCCCCCCCChH-Hhhhhh
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYK--IQFYVFHINHGLSPSSDK-WLIHCK 316 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~--~~~~~~~~~h~~~~~~~~-w~~~~~ 316 (318)
|.|+ +|+|||.||++||+.+..+....+ .++.++|++||++..+.. =.++|+
T Consensus 30 ~kil---Va~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~~~ 84 (258)
T PRK10696 30 DRVM---VCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEYLE 84 (258)
T ss_pred CEEE---EEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHHHH
Confidence 4455 799999999999999988765533 578899999999753322 245554
No 151
>KOG1681|consensus
Probab=97.18 E-value=0.00044 Score=61.98 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChh--HHHH--hhhc--cccch----HHHH
Q psy14493 176 EAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPE--GCAS--ILWK--TSKRA----SDAA 245 (318)
Q Consensus 176 ~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~--~~a~--il~~--~~~~~----~~a~ 245 (318)
+..-..+..+-.++.|+|+.|.|.|.|+|.-....||+.+++++|.+++=.-. -++. .+.+ +..+- .|.+
T Consensus 113 k~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~ela 192 (292)
T KOG1681|consen 113 KRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELA 192 (292)
T ss_pred HHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHH
Confidence 34455566677889999999999999999988888999999999998882211 1111 1211 11111 1111
Q ss_pred -HHhcccHHHHHHcCCcceeecCccccCCCCchHHHHHHHHHHhhccC
Q psy14493 246 -EALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCNYK 292 (318)
Q Consensus 246 -e~~~~~a~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~ 292 (318)
-+.++++.++++.|+|..|.+ |-..|+...+.+.....
T Consensus 193 fTar~f~a~EAl~~GLvSrvf~---------dk~~ll~~~l~mA~~Ia 231 (292)
T KOG1681|consen 193 FTARKFSADEALDSGLVSRVFP---------DKEELLNGALPMAELIA 231 (292)
T ss_pred hhhhhcchhhhhhcCcchhhcC---------CHHHHHhhhHHHHHHhc
Confidence 123589999999999999996 67778887777665543
No 152
>PRK10949 protease 4; Provisional
Probab=95.86 E-value=0.069 Score=55.38 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhC-C-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEE
Q psy14493 137 YRKAVRLMHIAEKF-N-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDIT 214 (318)
Q Consensus 137 ~~K~~r~~~~A~~~-~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~v 214 (318)
...+.+.++.|.+. + --||.-+||||..... ...+.+.+..+...++|+++.+-+-|++||.|+++.||.+
T Consensus 349 ~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~a-------se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I 421 (618)
T PRK10949 349 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTA-------SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYI 421 (618)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHH-------HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEE
Confidence 34555566555433 3 4689999999964432 2344555666666679999988888999999999899999
Q ss_pred EEEcccEEE
Q psy14493 215 LMLQYAIYS 223 (318)
Q Consensus 215 ia~~~A~i~ 223 (318)
+|.|.+..+
T Consensus 422 ~a~p~t~tG 430 (618)
T PRK10949 422 VASPSTLTG 430 (618)
T ss_pred EECCCCcee
Confidence 999975433
No 153
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=95.79 E-value=0.023 Score=48.22 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=29.9
Q ss_pred cCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeCh
Q psy14493 187 KLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISP 227 (318)
Q Consensus 187 ~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP 227 (318)
..++|+++.+-+.|.+++.|+++.||-++|.|.+.++.+|.
T Consensus 4 ~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv 44 (154)
T PF01343_consen 4 ASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGV 44 (154)
T ss_dssp HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---E
T ss_pred ccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeCh
Confidence 34699999999999888888888899999999988887665
No 154
>KOG1679|consensus
Probab=95.73 E-value=0.035 Score=49.63 Aligned_cols=137 Identities=17% Similarity=0.190 Sum_probs=83.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCcEEEEe-cCCCCCC-----ch-----hHHhhchHHHHHHHHHHHhcCCCCEEEEE
Q psy14493 129 FGMAKPEGYRKAVRLMHIAEK-FNLPIFTFI-DTPGAFP-----GI-----DAEERGQSEAIGHSIYVMSKLKVPLISTI 196 (318)
Q Consensus 129 gG~~~~~~~~K~~r~~~~A~~-~~lPiV~lv-Ds~Ga~~-----~~-----~~e~~g~~~~~~~~~~~~s~~~vP~IavV 196 (318)
-.+++....+....+++--.. .+.-+|.|- -+||.+. -+ .+|.......+-..+..+..+++|+|+.|
T Consensus 52 kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAi 131 (291)
T KOG1679|consen 52 KNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAI 131 (291)
T ss_pred hccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehh
Confidence 356666666666666654433 445555543 3555554 21 11111112233444556667899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcccEEEEeC------hh-HHHHhhhccccchHHHHHHh----cccHHHHHHcCCcceee
Q psy14493 197 IGEGGSGGALAIAVSDITLMLQYAIYSVIS------PE-GCASILWKTSKRASDAAEAL----GLTADKLKSIGLINKII 265 (318)
Q Consensus 197 ~G~~~ggga~~~~~~D~via~~~A~i~v~g------P~-~~a~il~~~~~~~~~a~e~~----~~~a~~a~~~G~vD~ii 265 (318)
-|-+.|||--.+..||+.++..++.|++.. |. ++..-+ ++..+..-+.|.. .++..+++..|+|+.++
T Consensus 132 dG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRL-pR~vg~alaKELIftarvl~g~eA~~lGlVnhvv 210 (291)
T KOG1679|consen 132 DGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRL-PRIVGVALAKELIFTARVLNGAEAAKLGLVNHVV 210 (291)
T ss_pred cchhcccchhhhhhccceehhhhccccccccceeeecCCCccchh-HHHHhHHHHHhHhhhheeccchhHHhcchHHHHH
Confidence 999999998887779999999988887732 22 222222 2222222333332 46889999999999999
Q ss_pred c
Q psy14493 266 K 266 (318)
Q Consensus 266 ~ 266 (318)
.
T Consensus 211 ~ 211 (291)
T KOG1679|consen 211 E 211 (291)
T ss_pred h
Confidence 6
No 155
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=95.18 E-value=0.014 Score=55.38 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=34.8
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhh
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIH 314 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~ 314 (318)
+.++ +|+|||.||.++++.+.+.. +.++.++|++||+++. .+++++
T Consensus 17 ~kVv---ValSGGVDSsvla~ll~~~~---G~~v~av~vd~G~~~~-~E~e~~ 62 (311)
T TIGR00884 17 AKVI---IALSGGVDSSVAAVLAHRAI---GDRLTCVFVDHGLLRK-GEAEQV 62 (311)
T ss_pred CcEE---EEecCChHHHHHHHHHHHHh---CCCEEEEEEeCCCCCh-HHHHHH
Confidence 5565 69999999999998876643 3468899999999863 344443
No 156
>PRK00074 guaA GMP synthase; Reviewed
Probab=94.27 E-value=0.037 Score=56.14 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=35.4
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCChHHhhhh
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHC 315 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~~~w~~~~ 315 (318)
+.++ +|+|||.||.++++.+.+.+ +.++.++|++||+.+. .+|++++
T Consensus 216 ~~vl---va~SGGvDS~vll~ll~~~l---g~~v~av~vd~g~~~~-~e~~~~~ 262 (511)
T PRK00074 216 KKVI---LGLSGGVDSSVAAVLLHKAI---GDQLTCVFVDHGLLRK-NEAEQVM 262 (511)
T ss_pred CcEE---EEeCCCccHHHHHHHHHHHh---CCceEEEEEeCCCCCH-HHHHHHH
Confidence 4455 69999999999999887654 3468899999999653 4455544
No 157
>PRK00919 GMP synthase subunit B; Validated
Probab=93.43 E-value=0.053 Score=51.42 Aligned_cols=39 Identities=33% Similarity=0.418 Sum_probs=31.7
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+.++ +|+|||.||.+++..+.+. ++.++.++|++||+++
T Consensus 22 ~kVl---Va~SGGVDSsvla~la~~~---lG~~v~aV~vD~G~~~ 60 (307)
T PRK00919 22 GKAI---IALSGGVDSSVAAVLAHRA---IGDRLTPVFVDTGLMR 60 (307)
T ss_pred CCEE---EEecCCHHHHHHHHHHHHH---hCCeEEEEEEECCCCC
Confidence 5566 6999999999999877663 3456889999999985
No 158
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=91.49 E-value=0.13 Score=43.07 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=27.4
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+++|||.||.++++.+.+.. ..++.++|++|+.+.
T Consensus 6 v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~~g~~~ 40 (154)
T cd01996 6 IGVSGGKDSSYALYLLKEKY---GLNPLAVTVDNGFNS 40 (154)
T ss_pred EECCCchhHHHHHHHHHHHh---CCceEEEEeCCCCCC
Confidence 58999999999999876543 224567899999873
No 159
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=90.83 E-value=0.15 Score=46.87 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=29.8
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+.++ +++|||.||.++++.+.+. +.++.++|++|+..+
T Consensus 13 ~~vl---Va~SGGvDSs~ll~la~~~----g~~v~av~~~~~~~~ 50 (252)
T TIGR00268 13 KKVL---IAYSGGVDSSLLAAVCSDA----GTEVLAITVVSPSIS 50 (252)
T ss_pred CCEE---EEecCcHHHHHHHHHHHHh----CCCEEEEEecCCCCC
Confidence 4555 6999999999999987664 456789999987543
No 160
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=87.94 E-value=0.28 Score=46.45 Aligned_cols=41 Identities=32% Similarity=0.528 Sum_probs=33.3
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+.++ +++|||-||.+|||.+.+.+...+.++.++|++.|.-
T Consensus 28 ~~~v---v~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~ 68 (301)
T PRK05253 28 ENPV---MLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWK 68 (301)
T ss_pred CCEE---EEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCC
Confidence 5554 6999999999999999887765455678899998874
No 161
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=87.26 E-value=0.33 Score=45.83 Aligned_cols=37 Identities=35% Similarity=0.542 Sum_probs=31.3
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
.++|||-||.++||.+.+.+...+.++.++|+++|.-
T Consensus 24 v~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~ 60 (294)
T TIGR02039 24 MLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWK 60 (294)
T ss_pred EEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCC
Confidence 4799999999999999888765456678999999975
No 162
>KOG1684|consensus
Probab=84.47 E-value=12 Score=36.14 Aligned_cols=147 Identities=12% Similarity=0.034 Sum_probs=89.1
Q ss_pred EEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCCCch------hHHh-----hch--
Q psy14493 109 SCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKF-NLPIFTFIDTPGAFPGI------DAEE-----RGQ-- 174 (318)
Q Consensus 109 ~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~-~lPiV~lvDs~Ga~~~~------~~e~-----~g~-- 174 (318)
.-++.-|.|. .=.+++.+..+++.-.+.-.++. ..-+|.+--++|-.... .+|. .+.
T Consensus 48 ~r~itLNRPK---------aLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~ 118 (401)
T KOG1684|consen 48 ARVITLNRPK---------ALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVK 118 (401)
T ss_pred eeEEEecCch---------hhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHH
Confidence 3345556665 23677888888888776555444 34566665554422211 1111 111
Q ss_pred --HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEE------eChhHHHHhhhccccchHHHHH
Q psy14493 175 --SEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV------ISPEGCASILWKTSKRASDAAE 246 (318)
Q Consensus 175 --~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v------~gP~~~a~il~~~~~~~~~a~e 246 (318)
+..-......+....+|.|+++-|-..|||.-.....-|.|+++...+++ .-|+.+++....+..+ ....
T Consensus 119 ~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg--~lg~ 196 (401)
T KOG1684|consen 119 KFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG--YLGL 196 (401)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc--HHHH
Confidence 23334445556667899999999999999988887788999888864443 2456666666555443 2222
Q ss_pred Hh-----cccHHHHHHcCCcceeec
Q psy14493 247 AL-----GLTADKLKSIGLINKIIK 266 (318)
Q Consensus 247 ~~-----~~~a~~a~~~G~vD~ii~ 266 (318)
++ +++..++...|+...=++
T Consensus 197 YLgLTG~rl~GaD~~~~GlATHyv~ 221 (401)
T KOG1684|consen 197 YLGLTGQRLSGADALRCGLATHYVP 221 (401)
T ss_pred hhhhccceecchHHHHhcchhhccc
Confidence 32 356677777777665553
No 163
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=83.80 E-value=1.3 Score=40.61 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=28.0
Q ss_pred cceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 261 INKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 261 vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
.+.|+ +|+|||.||.++++.+.+.+ +.+..++|.+++..
T Consensus 22 ~~~V~---vglSGGiDSsvla~l~~~~~---~~~~~~~~~~~~~~ 60 (250)
T TIGR00552 22 AKGVV---LGLSGGIDSAVVAALCVEAL---GEQNHALLLPHSVQ 60 (250)
T ss_pred CCCEE---EECCCcHHHHHHHHHHHHhh---CCceEEEEECCccC
Confidence 45565 69999999999988765543 22556778887753
No 164
>PLN02347 GMP synthetase
Probab=83.11 E-value=0.99 Score=46.16 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=32.2
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSS 308 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~~~ 308 (318)
+.++ +|+|||.||.+++..+.+.+ +.++.++++++|+.+..
T Consensus 230 ~~vv---valSGGVDSsvla~l~~~al---G~~v~av~id~g~~~~~ 270 (536)
T PLN02347 230 EHVI---CALSGGVDSTVAATLVHKAI---GDRLHCVFVDNGLLRYK 270 (536)
T ss_pred CeEE---EEecCChhHHHHHHHHHHHh---CCcEEEEEEeCCCCChh
Confidence 4455 69999999999999887744 34678999999997543
No 165
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=82.90 E-value=7.5 Score=40.24 Aligned_cols=86 Identities=9% Similarity=-0.006 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhC-CCcEE-EEecC-CCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc
Q psy14493 134 PEGYRKAVRLMHIAEKF-NLPIF-TFIDT-PGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAV 210 (318)
Q Consensus 134 ~~~~~K~~r~~~~A~~~-~lPiV-~lvDs-~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~ 210 (318)
+.+...+.+.++.|.+. ++.=| .=+|+ +|..+. ....+.+.+..+...++|+++..-. ...++.|.+..
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~-------~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~ 146 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSP-------HLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASF 146 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHH-------HHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhh
Confidence 56788899999887654 55544 44664 343222 2345667777777778999985433 23566666677
Q ss_pred ccEEEEEcccEEEEeCh
Q psy14493 211 SDITLMLQYAIYSVISP 227 (318)
Q Consensus 211 ~D~via~~~A~i~v~gP 227 (318)
||.+++.|.+.+.+.|-
T Consensus 147 AD~I~~~p~G~v~~~G~ 163 (584)
T TIGR00705 147 ADEIILNPMGSVDLHGF 163 (584)
T ss_pred CCEEEECCCceEEeece
Confidence 99999999987866553
No 166
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=82.48 E-value=1.1 Score=43.03 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=26.6
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+|+|||.||..+++.+... ++..+.++|.+|+..
T Consensus 64 V~lSGGkDSs~la~ll~~~---~gl~~l~vt~~~~~~ 97 (343)
T TIGR03573 64 IGVSGGKDSTYQAHVLKKK---LGLNPLLVTVDPGWN 97 (343)
T ss_pred EECCCCHHHHHHHHHHHHH---hCCceEEEEECCCCC
Confidence 5899999999999876442 345556789999986
No 167
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=80.68 E-value=1 Score=42.75 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=31.4
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
..+|||.||.++||.+.+.+...+.++.++|++.|.-
T Consensus 42 v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~ 78 (312)
T PRK12563 42 MLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWK 78 (312)
T ss_pred EEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCC
Confidence 5899999999999999988765456778999999874
No 168
>PRK08576 hypothetical protein; Provisional
Probab=80.51 E-value=1.4 Score=43.89 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=27.1
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+++|||.||.++|+.+.+.+. .+.++|++.|..
T Consensus 239 VafSGGKDStvLL~La~k~~~----~V~aV~iDTG~e 271 (438)
T PRK08576 239 VPWSGGKDSTAALLLAKKAFG----DVTAVYVDTGYE 271 (438)
T ss_pred EEEcChHHHHHHHHHHHHhCC----CCEEEEeCCCCC
Confidence 699999999999998877543 367889998875
No 169
>PRK13980 NAD synthetase; Provisional
Probab=79.86 E-value=2.1 Score=39.51 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=29.9
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+.++ +|+|||.||.++++.+.+.+.. .++.++|.+|+..
T Consensus 31 ~~vv---v~lSGGiDSsv~a~l~~~~~~~--~~v~av~~~~~~~ 69 (265)
T PRK13980 31 KGVV---LGLSGGIDSAVVAYLAVKALGK--ENVLALLMPSSVS 69 (265)
T ss_pred CcEE---EECCCCHHHHHHHHHHHHHhCc--cceEEEEeeCCCC
Confidence 5666 6999999999999988765422 3567888888865
No 170
>PRK10949 protease 4; Provisional
Probab=79.73 E-value=9.5 Score=39.80 Aligned_cols=86 Identities=10% Similarity=0.072 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhC-CCc-EEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchh-hhhhhcc
Q psy14493 134 PEGYRKAVRLMHIAEKF-NLP-IFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSG-GALAIAV 210 (318)
Q Consensus 134 ~~~~~K~~r~~~~A~~~-~lP-iV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~gg-ga~~~~~ 210 (318)
+...+.+.+.++.|.+. ++- ||.=+|++|..... ....+...+..+...++|+++. +..++. +.|.+..
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a------~~~eI~~ai~~fk~sGKpVvA~--~~~~~s~~YyLASa 165 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQP------SMQYIGKALREFRDSGKPVYAV--GDSYSQGQYYLASF 165 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHH------HHHHHHHHHHHHHHhCCeEEEE--ecCccchhhhhhhh
Confidence 35667888999887654 444 56667776532111 2244566677777778999973 554444 5555667
Q ss_pred ccEEEEEcccEEEEeCh
Q psy14493 211 SDITLMLQYAIYSVISP 227 (318)
Q Consensus 211 ~D~via~~~A~i~v~gP 227 (318)
||.+++.|.+.+.+.|.
T Consensus 166 AD~I~l~P~G~v~~~G~ 182 (618)
T PRK10949 166 ANKIYLSPQGVVDLHGF 182 (618)
T ss_pred CCEEEECCCceEEEeee
Confidence 99999999988877664
No 171
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=77.32 E-value=2.6 Score=40.40 Aligned_cols=42 Identities=12% Similarity=0.246 Sum_probs=33.2
Q ss_pred EEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy14493 101 VLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 101 G~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~G 162 (318)
|+-...+.|-.|+..|+.. =..++.-|.+.|||+|.|+||-.
T Consensus 145 Gi~~m~~~Pd~viv~d~~~--------------------e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 145 GIKDMGGLPDLLFVIDTNK--------------------EDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred chhhcccCCCEEEEeCCcc--------------------chHHHHHHHHcCCCEEEEeeCCC
Confidence 5555677888888888762 24678899999999999999864
No 172
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=76.15 E-value=2.4 Score=41.29 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=29.2
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSP 306 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~~ 306 (318)
+.++ +++|||.||.++++.+.+ .+.++.++|.+++..+
T Consensus 173 ~kvl---vllSGGiDS~vaa~ll~k----rG~~V~av~~~~~~~~ 210 (371)
T TIGR00342 173 GKVL---ALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNEPAA 210 (371)
T ss_pred CeEE---EEecCCchHHHHHHHHHH----cCCeEEEEEEeCCCCc
Confidence 4555 699999999999988754 2567889999876543
No 173
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=74.67 E-value=1.8 Score=32.31 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=23.4
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHIN 301 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~ 301 (318)
.++|||.||..+++.+.++.+ ...++..+|++
T Consensus 3 v~~sgg~dS~~~l~~~~~~~~-~~~~~~~~~~~ 34 (86)
T cd01984 3 VALSGGLDSSVLLHLAKRLKS-GGPEVVALVVV 34 (86)
T ss_pred EEeeCCHHHHHHHHHHHHHHh-cCCCEEEEEeH
Confidence 478999999999999888653 24455555554
No 174
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=72.65 E-value=2.8 Score=40.24 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=30.0
Q ss_pred cceeecCccccCCCCchHHHHHHHHHHhhccCc-cccccCC
Q psy14493 261 INKIIKEPIAYSGGIDSSVLLDISFTLFCNYKI-QFYVFHI 300 (318)
Q Consensus 261 vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~-~~~~~~~ 300 (318)
.+.|+ ++||||-||-++||..++..++.+. ++.+.|+
T Consensus 27 f~~Vc---VSFSGGKDS~lmLhL~~~~ar~~~~~~i~Vlfi 64 (407)
T COG3969 27 FPRVC---VSFSGGKDSGLMLHLVAEVARENGRDKISVLFI 64 (407)
T ss_pred CCeEE---EEecCCCchhHHHHHHHHHHHHhCCCceEEEEE
Confidence 47777 6999999999999999999988765 5555554
No 175
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=71.95 E-value=3.1 Score=37.83 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=29.3
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+.++ +++|||-||.++|+.+.+. ..++.++++++|.-
T Consensus 41 ~~i~---vs~SGGKDS~vlL~L~~~~----~~~i~vvfiDTG~~ 77 (241)
T PRK02090 41 GRLA---LVSSFGAEDAVLLHLVAQV----DPDIPVIFLDTGYL 77 (241)
T ss_pred CCEE---EEecCCHHHHHHHHHHHhc----CCCCcEEEecCCCC
Confidence 4544 6899999999999988764 34577889999883
No 176
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=69.25 E-value=5 Score=36.81 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=33.8
Q ss_pred EEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy14493 100 GVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP 161 (318)
Q Consensus 100 tG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~ 161 (318)
.|+-..++.|=+++..|+. +=..++.-|.+.|+|||.++||-
T Consensus 148 gGIk~m~~~Pd~l~ViDp~--------------------~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 148 GGIKDMKGLPDVLFVIDPR--------------------KEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred cchhhccCCCCEEEEeCCc--------------------HhHHHHHHHHHcCCCEEEEecCC
Confidence 4555677888899999987 33457888999999999999984
No 177
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=68.41 E-value=7.7 Score=35.34 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=28.8
Q ss_pred cceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 261 INKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 261 vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
.+.++ +++|||.||..+++.+.+.+.. ..+.+++...+..
T Consensus 23 ~~~vv---v~lSGGiDSs~~a~la~~~~~~--~~v~~~~~~~~~~ 62 (248)
T cd00553 23 FKGVV---LGLSGGIDSALVAALAVRALGR--ENVLALFMPSRYS 62 (248)
T ss_pred CCCEE---EeCCCcHHHHHHHHHHHHHhCc--ccEEEEECCCCCC
Confidence 35566 6999999999999988776542 3456777776643
No 178
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=66.19 E-value=2.8 Score=38.83 Aligned_cols=43 Identities=30% Similarity=0.567 Sum_probs=33.8
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC-CCChHHhhhh
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS-PSSDKWLIHC 315 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~-~~~~~w~~~~ 315 (318)
..+|||.||.++|+.+.+.+.. +.++|+++|.- ++-.+|.+-.
T Consensus 44 ~~~S~Gkds~V~l~L~~k~~~~----~~vif~DTg~~f~Et~~~~d~~ 87 (261)
T COG0175 44 VSFSGGKDSTVLLHLAAKAFPD----FPVIFLDTGYHFPETYEFRDRL 87 (261)
T ss_pred EEecCchhHHHHHHHHHHhcCC----CcEEEEeCCCcCHHHHHHHHHH
Confidence 5899999999999998877654 66899999886 6666655543
No 179
>PRK13794 hypothetical protein; Provisional
Probab=61.48 E-value=4.5 Score=40.80 Aligned_cols=34 Identities=38% Similarity=0.586 Sum_probs=27.7
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+++|||-||.++|+.+.+.+ +.++.++++++|+-
T Consensus 252 vs~SGGKDS~v~L~L~~~~~---~~~~~vvfiDTG~e 285 (479)
T PRK13794 252 VAYSGGKDSLATLLLALKAL---GINFPVLFNDTGLE 285 (479)
T ss_pred EEecchHHHHHHHHHHHHHh---CCCeEEEEEECCCC
Confidence 69999999999999887765 23466888999985
No 180
>PRK08557 hypothetical protein; Provisional
Probab=61.21 E-value=4.6 Score=40.01 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=27.8
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC-CC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS-PS 307 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~-~~ 307 (318)
+++|||-||.++++.+.++. ..+.++++++|+. |+
T Consensus 186 vsfSGGKDS~vlL~L~~~~~----~~i~vvfvDTG~efpE 221 (417)
T PRK08557 186 ASFSGGKDSSVSTLLAKEVI----PDLEVIFIDTGLEYPE 221 (417)
T ss_pred EEcCCcHHHHHHHHHHHHhC----CCCEEEEEECCCCCHH
Confidence 69999999999998776543 2467899999986 44
No 181
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=61.17 E-value=7.6 Score=35.97 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=32.3
Q ss_pred EEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy14493 101 VLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 101 G~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~G 162 (318)
|+-.....|-.|+..|+. +-..++.-|.+.++|+|.|+||-.
T Consensus 150 Gi~~m~~~Pd~iii~d~~--------------------~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 150 GIKDMGGLPDALFVVDPN--------------------KEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred CccccccCCCEEEEeCCC--------------------ccHHHHHHHHHhCCCEEEEeeCCC
Confidence 344566778888888876 233678899999999999999854
No 182
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=60.88 E-value=8.2 Score=34.96 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=31.8
Q ss_pred EEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy14493 101 VLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 101 G~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~G 162 (318)
|+-.....|-.|+..|+. +-..++.-|.+.++|+|.++||-.
T Consensus 148 Gi~~m~~~Pd~vii~d~~--------------------~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 148 GIKDMKKLPDLLFVIDPV--------------------KEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred CccccccCCCEEEEeCCC--------------------ccHHHHHHHHHcCCCEEEEeeCCC
Confidence 344456677778888875 234678899999999999999854
No 183
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=60.05 E-value=23 Score=32.81 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchh
Q psy14493 35 KEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTL 73 (318)
Q Consensus 35 ~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~ 73 (318)
++++..|++ +++++||||+.+.|+ |+++
T Consensus 6 ~~v~~ar~~---------~r~~are~I~~L~D~--F~El 33 (256)
T PRK12319 6 RILKEARDQ---------GRLTTLDYATLIFDD--FMEL 33 (256)
T ss_pred HHHHHhccC---------CCCCHHHHHHHhCch--heec
Confidence 467777777 999999999999996 6664
No 184
>CHL00067 rps2 ribosomal protein S2
Probab=59.40 E-value=9.3 Score=34.72 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=30.8
Q ss_pred EEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy14493 104 RINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 104 ~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~G 162 (318)
.....|-.|+..|+.. -..++.-|.+.++|+|.++||-.
T Consensus 157 ~m~~~P~~iiv~d~~~--------------------~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 157 YMTKLPDIVIIIDQQE--------------------EYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred ccccCCCEEEEeCCcc--------------------cHHHHHHHHHcCCCEEEEEeCCC
Confidence 4556788888888762 23788999999999999999854
No 185
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=58.38 E-value=36 Score=32.22 Aligned_cols=67 Identities=27% Similarity=0.395 Sum_probs=49.3
Q ss_pred HHHHHHH-HHHHhCCCcEEEEecCCCCCCchhHHh-hchHHHHHHHHHHHhcCCCCEEEEEcCCCchhh
Q psy14493 138 RKAVRLM-HIAEKFNLPIFTFIDTPGAFPGIDAEE-RGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGG 204 (318)
Q Consensus 138 ~K~~r~~-~~A~~~~lPiV~lvDs~Ga~~~~~~e~-~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggg 204 (318)
+.+.+.+ ++++++++=.|.++|.+|=-+..+.|. ++..-.=+-.++++...+.|.+-.|+|++.=|+
T Consensus 103 ~~l~~al~~l~~~~~iD~Ii~VDvGgDvLa~G~E~~L~SPlaDa~sLAal~~l~~~~~l~v~G~G~Dge 171 (297)
T PF06626_consen 103 QGLARALRELAEKLGIDAIILVDVGGDVLARGDEPGLGSPLADAISLAALAKLEEPVILAVIGFGVDGE 171 (297)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCceEeecCccccCChHHHHHHHHHHHhcCCceEEEEEeCCcCCC
Confidence 3444444 567899999999999999777666664 444445566677788888899999999976543
No 186
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=56.44 E-value=8 Score=36.21 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=26.7
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
.|+|||.||.+.-..+.+.. +-.+.++-++||+-
T Consensus 26 ~alSGGVDSsv~a~L~~~Ai---Gd~l~cvfVD~GLl 59 (315)
T COG0519 26 LALSGGVDSSVAAVLAHRAI---GDQLTCVFVDHGLL 59 (315)
T ss_pred EEecCCCcHHHHHHHHHHHh---hcceEEEEecCCcc
Confidence 69999999998776665543 44678999999994
No 187
>PRK13795 hypothetical protein; Provisional
Probab=56.41 E-value=5.2 Score=41.87 Aligned_cols=35 Identities=40% Similarity=0.686 Sum_probs=27.8
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC-CC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS-PS 307 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~-~~ 307 (318)
+++|||.||.++|+.+.+.+. .+.++++++|+. |+
T Consensus 248 Va~SGGKDS~vll~L~~~a~~----~~~vvfiDTg~efpe 283 (636)
T PRK13795 248 VSFSGGKDSLVVLDLAREALK----DFKAFFNNTGLEFPE 283 (636)
T ss_pred EEecCcHHHHHHHHHHHHhCC----CcEEEEEeCCCCCHH
Confidence 699999999999998876533 256888999886 44
No 188
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=52.91 E-value=8.9 Score=35.42 Aligned_cols=20 Identities=40% Similarity=0.743 Sum_probs=17.4
Q ss_pred cccCCCCchHHHHHHHHHHh
Q psy14493 269 IAYSGGIDSSVLLDISFTLF 288 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~ 288 (318)
+|||||.||..|+..+...+
T Consensus 22 vAfSGGvDSslLa~la~~~l 41 (269)
T COG1606 22 VAFSGGVDSSLLAKLAKEAL 41 (269)
T ss_pred EEecCCccHHHHHHHHHHHh
Confidence 79999999999998886655
No 189
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=51.80 E-value=40 Score=31.07 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=15.5
Q ss_pred HHHHHhcCCCCEEEEEcCCC
Q psy14493 181 SIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 181 ~~~~~s~~~vP~IavV~G~~ 200 (318)
.+.+...+++|+|++|-=.|
T Consensus 171 Av~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 171 AVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred HHHHHHHcCCCEEEEecCCC
Confidence 34556778999999988776
No 190
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=51.21 E-value=8 Score=37.94 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=24.6
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHIN 301 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~ 301 (318)
+.++ +++|||.||.++++.+.+ .+.++.++|.+
T Consensus 177 gkvv---vllSGGiDS~vaa~l~~k----~G~~v~av~~~ 209 (394)
T PRK01565 177 GKAL---LLLSGGIDSPVAGYLAMK----RGVEIEAVHFH 209 (394)
T ss_pred CCEE---EEECCChhHHHHHHHHHH----CCCEEEEEEEe
Confidence 4455 689999999999987755 25566777874
No 191
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=50.41 E-value=10 Score=34.31 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=29.7
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+.++ ..+|||.||.++||.+.++.. ..+.+++++.|.-
T Consensus 26 ~~~~---~s~S~Gkds~VlL~l~~~~~~---~~i~vv~vDTg~~ 63 (226)
T TIGR02057 26 HGLV---QTSAFGIQALVTLHLLSSISE---PMIPVIFIDTLYH 63 (226)
T ss_pred CCEE---EEecCCHHHHHHHHHHHHhhC---CCCCEEEEeCCCC
Confidence 4555 589999999999999887651 3467889998875
No 192
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=48.93 E-value=10 Score=33.58 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=26.0
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
+.+|||.||.+|||.+.+... ++.+++++.|.-
T Consensus 18 ~s~SgGKDS~Vll~L~~~~~~----~~~v~f~DTg~e 50 (212)
T TIGR00434 18 YSTSFGIQGAVLLDLVSKISP----DIPVIFLDTGYH 50 (212)
T ss_pred EEecCCHHHHHHHHHHHhcCC----CCcEEEecCCCC
Confidence 589999999999998876542 456778888775
No 193
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=48.83 E-value=18 Score=32.06 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCcEEEEecCCC
Q psy14493 141 VRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 141 ~r~~~~A~~~~lPiV~lvDs~G 162 (318)
..++.-|.+.|+|+|.|+||-.
T Consensus 121 ~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 121 HQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred cHHHHHHHHcCCCEEEEeeCCC
Confidence 4678889999999999999754
No 194
>PRK06850 hypothetical protein; Provisional
Probab=47.96 E-value=14 Score=37.59 Aligned_cols=44 Identities=27% Similarity=0.534 Sum_probs=29.5
Q ss_pred ccccCCCCchHHHHHHHHHHhhccCc-----cccccCCCCCCC-CCChHH
Q psy14493 268 PIAYSGGIDSSVLLDISFTLFCNYKI-----QFYVFHINHGLS-PSSDKW 311 (318)
Q Consensus 268 p~~~sgg~ds~~ll~~~~~l~~~~~~-----~~~~~~~~h~~~-~~~~~w 311 (318)
-+|+|||-||.++|+..+..+...+. .+.+++.+-|+= |.-..|
T Consensus 38 vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~ 87 (507)
T PRK06850 38 VIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDW 87 (507)
T ss_pred EEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHH
Confidence 37999999999999988876554321 344555566663 544444
No 195
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=47.65 E-value=19 Score=31.61 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=28.3
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP 161 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~ 161 (318)
....|-.|+..|+. +-..++.-|.+.++|+|.++||-
T Consensus 124 ~~~~Pdlviv~~~~--------------------~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 124 MFRLPDLVIVLDPR--------------------KEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cccCCCEEEEeCCc--------------------cchHHHHHHHHcCCCEEEEecCC
Confidence 44466667777765 23477889999999999999986
No 196
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=47.06 E-value=16 Score=33.36 Aligned_cols=29 Identities=31% Similarity=0.603 Sum_probs=22.1
Q ss_pred HHcCCcceeecCccccCCCCchHHHHHHHHHHh
Q psy14493 256 KSIGLINKIIKEPIAYSGGIDSSVLLDISFTLF 288 (318)
Q Consensus 256 ~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~ 288 (318)
.+.|. ..++ +|+|||.||.++...+.+.+
T Consensus 14 ~~~g~-~~vV---vglSGGiDSav~A~La~~Al 42 (242)
T PF02540_consen 14 KKSGA-KGVV---VGLSGGIDSAVVAALAVKAL 42 (242)
T ss_dssp HHHTT-SEEE---EEETSSHHHHHHHHHHHHHH
T ss_pred HHhCC-CeEE---EEcCCCCCHHHHHHHHHHHh
Confidence 34453 5566 69999999999988877766
No 197
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=46.74 E-value=22 Score=31.77 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCcEEEEecCCC
Q psy14493 141 VRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 141 ~r~~~~A~~~~lPiV~lvDs~G 162 (318)
..++.-|.+.++|+|.|+||-.
T Consensus 127 ~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 127 AQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred HHHHHHHHHhCCCEEEEEeCCC
Confidence 4677888899999999999743
No 198
>PRK02628 nadE NAD synthetase; Reviewed
Probab=45.87 E-value=19 Score=38.00 Aligned_cols=44 Identities=23% Similarity=0.478 Sum_probs=29.5
Q ss_pred HHHHHcCCcceeecCccccCCCCchHHHHHHHHHHhhccC---ccccccCC
Q psy14493 253 DKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFCNYK---IQFYVFHI 300 (318)
Q Consensus 253 ~~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~---~~~~~~~~ 300 (318)
..+.+.| .+.++ +|+|||.||...+..+.+.+...+ ..+.+++.
T Consensus 354 ~~~~~~~-~~~vv---vglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m 400 (679)
T PRK02628 354 QRLRATG-LKKVV---IGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM 400 (679)
T ss_pred HHHHHcC-CCeEE---EECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC
Confidence 3344455 67777 799999999988887777654333 34445554
No 199
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=45.12 E-value=60 Score=31.12 Aligned_cols=52 Identities=10% Similarity=0.129 Sum_probs=32.6
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCC
Q psy14493 6 LNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHP 67 (318)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~ 67 (318)
.|+.+.+..|+.+++++....... ...-++++..+.. ++.++++.|+.+.|.
T Consensus 34 ~~~~~~i~~l~~~~~~~~~~~~~~-l~~w~~v~~aR~~---------~Rp~~~d~i~~l~d~ 85 (322)
T CHL00198 34 KVINNKLKSFQRKLRILKKEIFYS-LTPLQRLHLVRQS---------ERPTTLDYIPYILDE 85 (322)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHhhcCC---------CCCCHHHHHHHHhHH
Confidence 556666777777777665443332 2222445554544 679999999988883
No 200
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=43.35 E-value=11 Score=37.05 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=24.7
Q ss_pred cccCCCCchHHHHHHHHHHhhccCccccccCCCCC
Q psy14493 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHG 303 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~ 303 (318)
+++|||.||.+.+..+.+ .+.++.++|.+++
T Consensus 185 vllSGGiDSpVAa~ll~k----rG~~V~~v~f~~g 215 (381)
T PRK08384 185 ALLSGGIDSPVAAFLMMK----RGVEVIPVHIYMG 215 (381)
T ss_pred EEEeCChHHHHHHHHHHH----cCCeEEEEEEEeC
Confidence 688999999998887654 3667788898776
No 201
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=42.84 E-value=50 Score=33.73 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=54.2
Q ss_pred CCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcccEEEEeChhH
Q psy14493 150 FNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEG 229 (318)
Q Consensus 150 ~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~via~~~A~i~v~gP~~ 229 (318)
+|-|.+.+.|-|-+.+...-| .+..+.+..+...+.-+|.+-.+|+ ++..+|.+.+..++++..-||+.
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE-----~AL~~Ai~~~k~rG~~vvviaHRPs------~L~~~Dkilvl~~G~~~~FG~r~ 556 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGE-----AALAAAILAAKARGGTVVVIAHRPS------ALASVDKILVLQDGRIAAFGPRE 556 (580)
T ss_pred cCCCcEEEecCCCCCcchhHH-----HHHHHHHHHHHHcCCEEEEEecCHH------HHhhcceeeeecCChHHhcCCHH
Confidence 688999999999888876555 3456667777777777887777875 45668999999999999999963
No 202
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=42.38 E-value=39 Score=29.92 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.2
Q ss_pred CCCcEEEEecCCCCCCchhHHhhc
Q psy14493 150 FNLPIFTFIDTPGAFPGIDAEERG 173 (318)
Q Consensus 150 ~~lPiV~lvDs~Ga~~~~~~e~~g 173 (318)
.++|++.|.|+.|.+.|+..|...
T Consensus 2 rRlP~~lllDtSgSM~Ge~IealN 25 (207)
T COG4245 2 RRLPCYLLLDTSGSMIGEPIEALN 25 (207)
T ss_pred CCCCEEEEEecCcccccccHHHHH
Confidence 479999999999999999888754
No 203
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=41.05 E-value=17 Score=36.35 Aligned_cols=45 Identities=22% Similarity=0.492 Sum_probs=29.1
Q ss_pred ccccCCCCchHHHHHHHHHHhhccCc-----cccccCCCCCCC-CCChHHh
Q psy14493 268 PIAYSGGIDSSVLLDISFTLFCNYKI-----QFYVFHINHGLS-PSSDKWL 312 (318)
Q Consensus 268 p~~~sgg~ds~~ll~~~~~l~~~~~~-----~~~~~~~~h~~~-~~~~~w~ 312 (318)
-+++|||-||.++|+..+..+...+. .+++++.+-|.= |.-.+|.
T Consensus 17 vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v 67 (447)
T TIGR03183 17 VVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWV 67 (447)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHH
Confidence 37999999999999988876654321 234444466653 5444443
No 204
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=40.70 E-value=19 Score=36.35 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=28.7
Q ss_pred cceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCCC
Q psy14493 261 INKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLS 305 (318)
Q Consensus 261 vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~~ 305 (318)
-+.++ ..+|||.||.+++..+.+. +.++.++|.+-|.+
T Consensus 177 ~gk~l---vllSGGiDS~va~~~~~kr----G~~v~~l~f~~g~~ 214 (482)
T PRK01269 177 QEDVL---SLISGGFDSGVASYMLMRR----GSRVHYCFFNLGGA 214 (482)
T ss_pred cCeEE---EEEcCCchHHHHHHHHHHc----CCEEEEEEEecCCc
Confidence 35555 5899999999998876543 55778889887765
No 205
>PRK00876 nadE NAD synthetase; Reviewed
Probab=40.03 E-value=21 Score=34.27 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=24.0
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHG 303 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~ 303 (318)
+.++ +++|||.||.+++..+.+.+.. ..+..++...+
T Consensus 34 ~~Vv---VgLSGGIDSSvvaaLa~~a~g~--~~v~av~~~~~ 70 (326)
T PRK00876 34 RGVV---LGLSGGIDSSVTAALCVRALGK--ERVYGLLMPER 70 (326)
T ss_pred CCEE---EEccCCHHHHHHHHHHHHhhCC--CcEEEEEecCC
Confidence 4455 6999999999998877654322 23445555444
No 206
>PRK05370 argininosuccinate synthase; Validated
Probab=39.39 E-value=19 Score=35.88 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=28.3
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhccCccccccCCCCCC
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGL 304 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~~~~~~~~~~~~h~~ 304 (318)
+.|+ .++|||+||.+++..+.+ + +.++.+++.+-|-
T Consensus 12 ~KVv---LAYSGGLDTSv~l~wL~e---~-~~eVia~~aDvGQ 47 (447)
T PRK05370 12 QRVG---IAFSGGLDTSAALLWMRQ---K-GAVPYAYTANLGQ 47 (447)
T ss_pred CEEE---EEecCCchHHHHHHHHHh---c-CCeEEEEEEECCC
Confidence 4555 599999999999887654 2 6678899999885
No 207
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.26 E-value=67 Score=33.31 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=54.3
Q ss_pred CHHHHHHhhcCCCCCchhhH-Hhhhcc---cccccccCCc---cCCCCcEEEEEEE--EcCEEEEEEeecCCCCccchhh
Q psy14493 56 TPWQISQIARHPKRPYTLDY-IREIFT---DIHELHGDRN---YGDDLSIIGVLAR--INGESCMVIGHQKGRNVNERII 126 (318)
Q Consensus 56 tareRi~~~~d~~~~~~~~~-i~~~~d---~~~el~~~~~---~~d~~~vVtG~g~--i~Gr~V~Vva~d~~~~~~~~~~ 126 (318)
.+|||+.-...|-+..|..+ +..+-. +|.++...+. -|-|+|+.||++- +||..+.+.+...-
T Consensus 204 A~re~l~g~V~~m~~~Dv~V~I~pV~r~rief~pl~~~r~~lIVGIDPGiTtgiAvldldGevl~~~S~r~~-------- 275 (652)
T COG2433 204 APRERLPGVVKPMRGGDVQVRIEPVERDRIEFVPLRPERRSLIVGIDPGITTGIAVLDLDGEVLDLESRRGI-------- 275 (652)
T ss_pred cChhhhhhhcccccCCceEEEEEEhhhcccccccCcccccceEEEeCCCceeeEEEEecCCcEEeeeccccC--------
Confidence 46777765556655555432 333332 3555553321 2346999999996 48998887766532
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy14493 127 RNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP 161 (318)
Q Consensus 127 ~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~ 161 (318)
--..++++..+.|.|+|.=.|..
T Consensus 276 ------------~~~eVve~I~~lG~PvvVAtDVt 298 (652)
T COG2433 276 ------------DRSEVVEFISELGKPVVVATDVT 298 (652)
T ss_pred ------------CHHHHHHHHHHcCCceEEEccCC
Confidence 12367788888999999888864
No 208
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=39.16 E-value=1.3e+02 Score=28.84 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=31.2
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchh
Q psy14493 6 LNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTL 73 (318)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~ 73 (318)
.|+.+.+..|++++++++...... ...-++++.-+.. .+-...+.|..+.|. +.++
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~-l~~w~~v~~ar~~---------~Rp~~~d~i~~l~d~--f~EL 86 (316)
T TIGR00513 31 VDLSEEIERLEKRSVELTKKIFSN-LGAWQRLQLARHP---------DRPYTLDYIELIFDD--FFEL 86 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHhCC---------CCCchHHHHHHHhhh--heee
Confidence 455666666666666654433222 2222344444444 557777889888883 5553
No 209
>PTZ00323 NAD+ synthase; Provisional
Probab=37.94 E-value=20 Score=33.90 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred cceeecCccccCCCCchHHHHHHHHHHhhc
Q psy14493 261 INKIIKEPIAYSGGIDSSVLLDISFTLFCN 290 (318)
Q Consensus 261 vD~ii~~p~~~sgg~ds~~ll~~~~~l~~~ 290 (318)
.+.++ +|+|||.||.+++..+.+.+..
T Consensus 46 ~~~vV---VglSGGVDSav~aaLa~~alg~ 72 (294)
T PTZ00323 46 LKGCV---TSVSGGIDSAVVLALCARAMRM 72 (294)
T ss_pred CCcEE---EECCCCHHHHHHHHHHHHHhcc
Confidence 35555 6999999999999887776543
No 210
>KOG0781|consensus
Probab=36.09 E-value=96 Score=31.56 Aligned_cols=86 Identities=20% Similarity=0.256 Sum_probs=42.9
Q ss_pred cCEEEEEEeecCCCC--cc------chhhccCCCC--------CHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhH
Q psy14493 106 NGESCMVIGHQKGRN--VN------ERIIRNFGMA--------KPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDA 169 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~--~~------~~~~~~gG~~--------~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~ 169 (318)
|+..|.|.|-|.=.. .| ++...+.|.+ +-..+.-+-.+++.|...+--|| |+||+|=+ ...
T Consensus 405 NkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVv-LiDTAGR~-~~~- 481 (587)
T KOG0781|consen 405 NKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVV-LIDTAGRM-HNN- 481 (587)
T ss_pred CCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEE-EEeccccc-cCC-
Confidence 788999999985221 00 1221122221 11223334466777777776654 67998843 321
Q ss_pred HhhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q psy14493 170 EERGQSEAIGHSIYVMSKLKVPLISTIIGEG 200 (318)
Q Consensus 170 e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~ 200 (318)
..+...+..+.....|-..+.+|++
T Consensus 482 ------~~lm~~l~k~~~~~~pd~i~~vgea 506 (587)
T KOG0781|consen 482 ------APLMTSLAKLIKVNKPDLILFVGEA 506 (587)
T ss_pred ------hhHHHHHHHHHhcCCCceEEEehhh
Confidence 1122233334444455555555554
No 211
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=35.92 E-value=33 Score=30.57 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCcEEEEecCCC
Q psy14493 141 VRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 141 ~r~~~~A~~~~lPiV~lvDs~G 162 (318)
..++.-|.+.++|+|.|+||.-
T Consensus 156 ~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 156 KNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp HHHHHHHHHTTS-EEEEESTTS
T ss_pred chhHHHHHhcCceEEEeecCCC
Confidence 4778999999999999999853
No 212
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=35.71 E-value=1.5e+02 Score=24.90 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=37.9
Q ss_pred CCCcEEEEEEE--EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy14493 94 DDLSIIGVLAR--INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTP 161 (318)
Q Consensus 94 d~~~vVtG~g~--i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~ 161 (318)
-|+|..||++- ++|+++.+.+.... -...++++-.++|.|+|.=.|..
T Consensus 37 iDPG~ttgiAildL~G~~l~l~S~R~~--------------------~~~evi~~I~~~G~PviVAtDV~ 86 (138)
T PF04312_consen 37 IDPGTTTGIAILDLDGELLDLKSSRNM--------------------SRSEVIEWISEYGKPVIVATDVS 86 (138)
T ss_pred ECCCceeEEEEEecCCcEEEEEeecCC--------------------CHHHHHHHHHHcCCEEEEEecCC
Confidence 36899999996 58999998887643 12467777789999999999973
No 213
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=35.14 E-value=30 Score=31.25 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=15.9
Q ss_pred cccCCCCchHHHHHHHHHH
Q psy14493 269 IAYSGGIDSSVLLDISFTL 287 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~l 287 (318)
+.+|||.||..+...+.+.
T Consensus 20 ~~LSGGlDSs~va~~~~~~ 38 (269)
T cd01991 20 VLLSGGLDSSLVAALAARL 38 (269)
T ss_pred EeecccHHHHHHHHHHHHh
Confidence 5889999999998876654
No 214
>PRK11020 hypothetical protein; Provisional
Probab=34.45 E-value=87 Score=25.30 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhhcCCCc-HHHHHHHHHHHHHhhhhh
Q psy14493 8 FEEPIIKLEKKIEKLRSLQFSSNIDT-SKEINDLVKKCNKLTEEI 51 (318)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~ 51 (318)
....|..+.++++.+++....+...| .+.+..+.+.+++++++|
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I 47 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEI 47 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 45667888888888887776654333 335666666666666555
No 215
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.23 E-value=52 Score=28.98 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEE-ecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEE
Q psy14493 136 GYRKAVRLMHIAEKFNLPIFTF-IDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDIT 214 (318)
Q Consensus 136 ~~~K~~r~~~~A~~~~lPiV~l-vDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D~v 214 (318)
-+.++.|....+-.-+-|||.+ .|+||.. .|. .+.+..++ =++-+|+|++.-||.|.+++..|
T Consensus 89 ~gdRlars~~~a~~~~~~VliIg~DcP~lt----~el------La~a~taL-----~~~paVLGpa~dGGy~llgLrr~- 152 (211)
T COG3222 89 LGDRLARSHVDAFDGSYPVLIIGMDCPGLT----AEL------LADAFTAL-----LQIPAVLGPAFDGGYYLLGLRRF- 152 (211)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecCCCccC----HHH------HHHHHHHH-----hcCcceecccccCcEEEEEeecc-
Confidence 3456666666665555777665 7888753 121 12222222 23337899999999999886653
Q ss_pred EEEcccEEEEeChhHHHHhhhccccchHH---HHHHhcccHHHHHHcCCcceeec
Q psy14493 215 LMLQYAIYSVISPEGCASILWKTSKRASD---AAEALGLTADKLKSIGLINKIIK 266 (318)
Q Consensus 215 ia~~~A~i~v~gP~~~a~il~~~~~~~~~---a~e~~~~~a~~a~~~G~vD~ii~ 266 (318)
-|+--.+|=|....-.+. +......+++.+-..+-||..-+
T Consensus 153 -----------~pe~fe~ipwg~~~v~~lTl~~lrqng~~~~llp~L~DvDrpdD 196 (211)
T COG3222 153 -----------APELFEAIPWGTPDVLELTLKALRQNGIDVYLLPRLGDVDRPDD 196 (211)
T ss_pred -----------CHHHHhcCCCCCchHHHHHHHHHHHcCCcccccCccccCCCcch
Confidence 233333333333221111 11222356666667776665544
No 216
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=34.21 E-value=34 Score=31.57 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCcEEEEecCCC
Q psy14493 141 VRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 141 ~r~~~~A~~~~lPiV~lvDs~G 162 (318)
..++.-|.+.|||+|.|+||-.
T Consensus 131 ~qAI~EA~~lnIPvIal~DTds 152 (249)
T PTZ00254 131 HQAIREASYVNIPVIALCDTDS 152 (249)
T ss_pred hHHHHHHHHhCCCEEEEecCCC
Confidence 4678889999999999999743
No 217
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=33.91 E-value=95 Score=31.05 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcccc
Q psy14493 133 KPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSD 212 (318)
Q Consensus 133 ~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D 212 (318)
|..+...++++++.|++.+-|=|.++-=||..+.+ .=.|. =..+++ ++..+++|+||.|=.+ +|
T Consensus 174 G~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiED-LW~FN-dE~vaR---Ai~~s~iPvISAVGHE-----------tD 237 (440)
T COG1570 174 GEGAAEEIVEAIERANQRGDVDVLIVARGGGSIED-LWAFN-DEIVAR---AIAASRIPVISAVGHE-----------TD 237 (440)
T ss_pred CCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHH-HhccC-hHHHHH---HHHhCCCCeEeecccC-----------CC
Confidence 45567789999999999985544444434433211 00010 022333 4555689999966433 34
Q ss_pred EEEEEcccEEEEeChhHHHHhhhcccc
Q psy14493 213 ITLMLQYAIYSVISPEGCASILWKTSK 239 (318)
Q Consensus 213 ~via~~~A~i~v~gP~~~a~il~~~~~ 239 (318)
|+++-=-|-+-..-|.+|++++.++..
T Consensus 238 ~tL~DfVAD~RApTPTaAAE~~vP~~~ 264 (440)
T COG1570 238 FTLADFVADLRAPTPTAAAELVVPDSA 264 (440)
T ss_pred ccHHHhhhhccCCCchHHHHHhCCCHH
Confidence 444322233444567888888877643
No 218
>KOG0073|consensus
Probab=33.88 E-value=81 Score=27.46 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=48.4
Q ss_pred EEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHh
Q psy14493 104 RINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEE 171 (318)
Q Consensus 104 ~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~ 171 (318)
++-|.|+-|+||... ..|++..+.-.++..+-+++...+.||+.-.-..|-.+-++...
T Consensus 114 rlaG~~~Lvlank~d---------l~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidW 172 (185)
T KOG0073|consen 114 RLAGAPLLVLANKQD---------LPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDW 172 (185)
T ss_pred hhcCCceEEEEecCc---------CccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHH
Confidence 456789999999987 56999999999999999999889999998887777665554443
No 219
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=33.43 E-value=53 Score=24.82 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=27.1
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHhCCCcE
Q psy14493 125 IIRNFGMAKPEGYRKAVRLMHIAEKFNLPI 154 (318)
Q Consensus 125 ~~~~gG~~~~~~~~K~~r~~~~A~~~~lPi 154 (318)
.+..||.+-..--+-+.++.++|.++++|+
T Consensus 39 skeRgG~IP~~V~~sl~kL~~La~~N~v~f 68 (82)
T PF11020_consen 39 SKERGGQIPEKVMDSLSKLYKLAKENNVSF 68 (82)
T ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHcCCCH
Confidence 457899999999999999999999999885
No 220
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=33.25 E-value=1.2e+02 Score=28.44 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHHhCC----CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhh
Q psy14493 133 KPEGYRKAVRLMHIAEKFN----LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAI 208 (318)
Q Consensus 133 ~~~~~~K~~r~~~~A~~~~----lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~ 208 (318)
|..+...+.++++.+++.+ .=+|.++=.||..-. ...|.. ..+++ ++..+++|+||.|=.+
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eD--L~~FN~-e~var---ai~~~~~PvisaIGHe--------- 117 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIED--LWAFND-EEVAR---AIAASPIPVISAIGHE--------- 117 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecCCCChHH--hcccCh-HHHHH---HHHhCCCCEEEecCCC---------
Confidence 4566778888998888765 568888877775421 111111 22333 4556789999854222
Q ss_pred ccccEEEEEcccEEEEeChhHHHHhhhccc
Q psy14493 209 AVSDITLMLQYAIYSVISPEGCASILWKTS 238 (318)
Q Consensus 209 ~~~D~via~~~A~i~v~gP~~~a~il~~~~ 238 (318)
.|++++---|-..+.-|..+++.+.++.
T Consensus 118 --~D~ti~D~vAd~ra~TPtaaAe~~~~~~ 145 (319)
T PF02601_consen 118 --TDFTIADFVADLRAPTPTAAAELIVPDR 145 (319)
T ss_pred --CCchHHHHHHHhhCCCHHHHHHHHhhhH
Confidence 3444432224444556666777776653
No 221
>PRK10132 hypothetical protein; Provisional
Probab=32.74 E-value=1.1e+02 Score=24.36 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=27.7
Q ss_pred ccchhhhHHHHHHHHHHH----HhhhhhcCCCcHHHHHHHHHHHHHhhhhhcCCCC
Q psy14493 5 FLNFEEPIIKLEKKIEKL----RSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLT 56 (318)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~lt 56 (318)
.-+++..++.+.+.+..| ++.........+++.+.++++++...++.-.+|.
T Consensus 7 ~~~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 7 RNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMH 62 (108)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666666666555544 4444343344445567777776665554433343
No 222
>PRK13981 NAD synthetase; Provisional
Probab=32.39 E-value=58 Score=33.23 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=19.9
Q ss_pred cceeecCccccCCCCchHHHHHHHHHHh
Q psy14493 261 INKIIKEPIAYSGGIDSSVLLDISFTLF 288 (318)
Q Consensus 261 vD~ii~~p~~~sgg~ds~~ll~~~~~l~ 288 (318)
...++ +|+|||.||.+++..+.+.+
T Consensus 280 ~~~~v---vglSGGiDSa~~a~la~~a~ 304 (540)
T PRK13981 280 FPGVV---LGLSGGIDSALVAAIAVDAL 304 (540)
T ss_pred CCeEE---EECCCCHHHHHHHHHHHHHh
Confidence 55666 69999999999988776654
No 223
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=31.49 E-value=1.4e+02 Score=29.53 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcccc
Q psy14493 133 KPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSD 212 (318)
Q Consensus 133 ~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~D 212 (318)
|..+...++++++.++..+.=+|.++=.||..- +.-.|.. ..+ ..++..+++|+||.|=.+ .|
T Consensus 174 G~~A~~~i~~al~~~~~~~~Dviii~RGGGS~e--DL~~Fn~-e~v---~~ai~~~~~Pvis~IGHE-----------~D 236 (438)
T PRK00286 174 GEGAAASIVAAIERANARGEDVLIVARGGGSLE--DLWAFND-EAV---ARAIAASRIPVISAVGHE-----------TD 236 (438)
T ss_pred CccHHHHHHHHHHHhcCCCCCEEEEecCCCCHH--HhhccCc-HHH---HHHHHcCCCCEEEeccCC-----------CC
Confidence 455677888888888887666788887777431 1111111 223 334556789999854322 34
Q ss_pred EEEEEcccEEEEeChhHHHHhhhccc
Q psy14493 213 ITLMLQYAIYSVISPEGCASILWKTS 238 (318)
Q Consensus 213 ~via~~~A~i~v~gP~~~a~il~~~~ 238 (318)
++++--=|-....-|..++.++.++.
T Consensus 237 ~tl~D~vAd~ra~TPtaaae~~~~~~ 262 (438)
T PRK00286 237 FTIADFVADLRAPTPTAAAELAVPDR 262 (438)
T ss_pred ccHHHHhhhccCCChHHHHHHhCccH
Confidence 44442224455566777777776654
No 224
>PRK00736 hypothetical protein; Provisional
Probab=29.94 E-value=1.7e+02 Score=21.17 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=6.3
Q ss_pred hhhhHHHHHHHHH
Q psy14493 8 FEEPIIKLEKKIE 20 (318)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (318)
++..|.+|+.++.
T Consensus 3 ~e~Ri~~LE~kla 15 (68)
T PRK00736 3 AEERLTELEIRVA 15 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 225
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=29.74 E-value=1.9e+02 Score=26.02 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=9.4
Q ss_pred HHhcCCCCEEEEEcCC
Q psy14493 184 VMSKLKVPLISTIIGE 199 (318)
Q Consensus 184 ~~s~~~vP~IavV~G~ 199 (318)
++....+|.|++ .|+
T Consensus 174 ~L~~~~iP~itv-~G~ 188 (210)
T COG2082 174 ALRESPIPYITV-RGR 188 (210)
T ss_pred HHHhCCCCeEEE-ecC
Confidence 455556888874 444
No 226
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=29.36 E-value=27 Score=30.89 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=13.6
Q ss_pred cccCCCCchHHHHHHHHH
Q psy14493 269 IAYSGGIDSSVLLDISFT 286 (318)
Q Consensus 269 ~~~sgg~ds~~ll~~~~~ 286 (318)
+.+|||.||..++..+.+
T Consensus 22 ~~LSGGlDSs~i~~~~~~ 39 (255)
T PF00733_consen 22 ILLSGGLDSSAIAALAAR 39 (255)
T ss_dssp EE--SSHHHHHHHHHHHH
T ss_pred EECCCChhHHHHHHHHHH
Confidence 578999999999887765
No 227
>COG1160 Predicted GTPases [General function prediction only]
Probab=29.04 E-value=67 Score=32.14 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=28.2
Q ss_pred EEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCch
Q psy14493 102 LARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGI 167 (318)
Q Consensus 102 ~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~ 167 (318)
|=|+-|+++++|.+.+++..+ |....|.=.+.+ +.++||+|.....
T Consensus 20 FNRL~g~r~AIV~D~pGvTRD-------------------r~y~~~~~~~~~-f~lIDTgGl~~~~ 65 (444)
T COG1160 20 FNRLTGRRIAIVSDTPGVTRD-------------------RIYGDAEWLGRE-FILIDTGGLDDGD 65 (444)
T ss_pred HHHHhCCeeeEeecCCCCccC-------------------CccceeEEcCce-EEEEECCCCCcCC
Confidence 346778999999999987432 222333334455 6666666666543
No 228
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=28.83 E-value=1.3e+02 Score=22.95 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCCcEEEE
Q psy14493 139 KAVRLMHIAEKFNLPIFTF 157 (318)
Q Consensus 139 K~~r~~~~A~~~~lPiV~l 157 (318)
-..++..+|++.++|++++
T Consensus 43 vv~~l~~lceek~Ip~v~V 61 (84)
T PRK13600 43 LMTRVLSQINQKNIPVSFF 61 (84)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 3458889999999999986
No 229
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=27.76 E-value=1.1e+02 Score=29.21 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=30.6
Q ss_pred EEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy14493 104 RINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 104 ~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~G 162 (318)
+|||+||.+|-.-... +...+-+..+-+.|.+.|+|=|+|+-+-+
T Consensus 155 kVdGKPv~~Iy~p~~~--------------pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 155 KVDGKPVFLIYRPGDI--------------PDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred eECCEEEEEEECcccc--------------cCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 8999999877655321 34444455556889999999666665543
No 230
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=27.61 E-value=1.5e+02 Score=22.23 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=23.7
Q ss_pred EEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEe
Q psy14493 109 SCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFI 158 (318)
Q Consensus 109 ~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lv 158 (318)
..+|+|+|.. + .-...+.++|...++|++.+-
T Consensus 29 klViiA~D~~---------------~---~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 29 KEVVVAEDAD---------------P---RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred eEEEEECCCC---------------H---HHHHHHHHHHHHcCCCEEEEC
Confidence 4678888865 2 133467789999999998875
No 231
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=27.42 E-value=2.7e+02 Score=27.83 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=30.7
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHhhhhhcCCCCHHHHHHhhcCCCCCchh
Q psy14493 6 LNFEEPIIKLEKKIEKLRSLQFSSNIDTSK-EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTL 73 (318)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~ltareRi~~~~d~~~~~~~ 73 (318)
.|+.+.|..|+++++++............. .+.|+-+ +.+..+=|..+.|. +.++
T Consensus 101 ~~~~~ei~~l~~~~~~~~~~i~~~Lt~wq~vq~aRhp~-----------RP~~~d~I~~i~dd--f~EL 156 (431)
T PLN03230 101 VDFSAQIAELEERYDQVRRELYSRLTPVQRLSVARHPN-----------RPTFLDHVLNMTDK--WVEL 156 (431)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCC-----------CCCHHHHHHHhhhH--Hhhh
Confidence 566666777777766665443332222222 3444443 47888888777763 5443
No 232
>PRK00768 nadE NAD synthetase; Reviewed
Probab=25.83 E-value=70 Score=29.80 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=22.5
Q ss_pred HHHHcCCcceeecCccccCCCCchHHHHHHHHHHhh
Q psy14493 254 KLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLFC 289 (318)
Q Consensus 254 ~a~~~G~vD~ii~~p~~~sgg~ds~~ll~~~~~l~~ 289 (318)
.+.+.| ...++ +|+|||.||-+.+..+...+.
T Consensus 32 ~l~~~g-~~g~V---lGlSGGIDSav~a~L~~~A~~ 63 (268)
T PRK00768 32 YLKKSG-LKSLV---LGISGGQDSTLAGRLAQLAVE 63 (268)
T ss_pred HHHHcC-CCeEE---EECCCCHHHHHHHHHHHHHHH
Confidence 344455 56666 699999999998876555544
No 233
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=24.94 E-value=93 Score=23.56 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy14493 136 GYRKAVRLMHIAEKFNLPIFTFIDTPG 162 (318)
Q Consensus 136 ~~~K~~r~~~~A~~~~lPiV~lvDs~G 162 (318)
+..-..|.+++|.+.++|++.+++.-.
T Consensus 38 a~~dv~r~~~~~~~~~vpilGvVENMs 64 (81)
T PF10609_consen 38 ALADVRRAIDMFRKLNVPILGVVENMS 64 (81)
T ss_dssp -HHHHHHHHHHHHCTT-EEEEEEECT-
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 455667888899999999999987644
No 234
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=24.91 E-value=91 Score=24.54 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCCch
Q psy14493 138 RKAVRLMHIAEKFNLPIFTFIDTPGAFPGI 167 (318)
Q Consensus 138 ~K~~r~~~~A~~~~lPiV~lvDs~Ga~~~~ 167 (318)
+...++++.|.+.+.|+|.|.+.++..+..
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 456788888999999999999988766543
No 235
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=24.70 E-value=2e+02 Score=26.09 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=33.0
Q ss_pred EEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy14493 109 SCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAF 164 (318)
Q Consensus 109 ~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~ 164 (318)
.|.|.+.+|+ +-|...-+....|+.++.++-.+.+..+..-+| ||..
T Consensus 133 ~VLvMsV~PG--------f~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVD-GGI~ 179 (229)
T PRK09722 133 KITVMTVDPG--------FAGQPFIPEMLDKIAELKALRERNGLEYLIEVD-GSCN 179 (229)
T ss_pred EEEEEEEcCC--------CcchhccHHHHHHHHHHHHHHHhcCCCeEEEEE-CCCC
Confidence 3556666676 466677778888888888777777777777777 4543
No 236
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=23.76 E-value=1.3e+02 Score=25.25 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=18.0
Q ss_pred HHHhcCCCCEEEEEcCCCc-hhhhhh
Q psy14493 183 YVMSKLKVPLISTIIGEGG-SGGALA 207 (318)
Q Consensus 183 ~~~s~~~vP~IavV~G~~~-ggga~~ 207 (318)
..+-..+-|+|.+-+|.|. +||.+.
T Consensus 69 k~Yea~PePKiViA~GaCa~~GGIf~ 94 (148)
T COG3260 69 KAYEAMPEPKIVIAVGACALSGGIFK 94 (148)
T ss_pred HHHHhCCCCcEEEEEcccccCCceec
Confidence 3455667899999999984 555443
No 237
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=23.67 E-value=5e+02 Score=23.26 Aligned_cols=76 Identities=18% Similarity=0.363 Sum_probs=44.8
Q ss_pred CCCCchhhHHhh-hcccccccccCCccCCCCcEEEEEEEEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHH
Q psy14493 67 PKRPYTLDYIRE-IFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMH 145 (318)
Q Consensus 67 ~~~~~~~~~i~~-~~d~~~el~~~~~~~d~~~vVtG~g~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~ 145 (318)
+|.|.-.+.+.. ++++...+. +..+..+-.|.++|.+|.|+..--+ . +..+. -+.+
T Consensus 19 ~Gdp~r~~~ia~~~l~~~~~~~------~~r~~~~~~G~~~g~~v~v~~tGiG------------~--~~aai---~~~e 75 (235)
T PRK05819 19 PGDPLRAKYIAETFLEDVVCVN------EVRGMLGFTGTYKGKRVSVMGTGMG------------I--PSISI---YANE 75 (235)
T ss_pred cCCHHHHHHHHHHHhcCcEeee------eeccEEEEEEEECCEEEEEEecCCC------------h--hHHHH---HHHH
Confidence 344444555554 566543322 2246777788999999999874422 1 22222 2334
Q ss_pred HHHhCCCcEEEEecCCCCCC
Q psy14493 146 IAEKFNLPIFTFIDTPGAFP 165 (318)
Q Consensus 146 ~A~~~~lPiV~lvDs~Ga~~ 165 (318)
++..++.-.|..+-|.|..-
T Consensus 76 Li~~~~~~~iI~~GtaG~l~ 95 (235)
T PRK05819 76 LITDYGVKKLIRVGSCGALQ 95 (235)
T ss_pred HHHhcCCcEEEEEecccCCC
Confidence 44568888888888887653
No 238
>PRK02119 hypothetical protein; Provisional
Probab=23.51 E-value=2.5e+02 Score=20.62 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=18.8
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhh
Q psy14493 6 LNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEE 50 (318)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 50 (318)
.++++++.+|+.++.-.+...+. -.+.+-++++.|.+++++
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~----LN~~v~~Qq~~id~L~~q 45 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEE----LNQALIEQQFVIDKMQVQ 45 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34556666666655433332221 112344455555444443
No 239
>KOG0259|consensus
Probab=23.46 E-value=1.4e+02 Score=29.48 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=34.4
Q ss_pred EEcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEE
Q psy14493 104 RINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFT 156 (318)
Q Consensus 104 ~i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~ 156 (318)
-+|-..|+++.++|.- -.|+..+..+.+|+ .++|.+.++|||.
T Consensus 195 l~DENT~AivviNP~N-------PcGnVys~~HL~ki---ae~A~klgi~vIa 237 (447)
T KOG0259|consen 195 LADENTVAIVVINPNN-------PCGNVYSEDHLKKI---AETAKKLGIMVIA 237 (447)
T ss_pred hhccCeeEEEEeCCCC-------CCcccccHHHHHHH---HHHHHHhCCeEEe
Confidence 3678899999999885 47777777777765 5778899999985
No 240
>PRK09732 hypothetical protein; Provisional
Probab=23.39 E-value=1.6e+02 Score=24.35 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=26.0
Q ss_pred CCHHHHHHHH-HHHHHHHhCCCcE-EEEecCCCCCC
Q psy14493 132 AKPEGYRKAV-RLMHIAEKFNLPI-FTFIDTPGAFP 165 (318)
Q Consensus 132 ~~~~~~~K~~-r~~~~A~~~~lPi-V~lvDs~Ga~~ 165 (318)
++...+++++ ..++.|.+.+.|+ |.++|..|.-+
T Consensus 7 Ltl~~A~~~~~aA~~~A~~~g~~v~iaVvD~~G~l~ 42 (134)
T PRK09732 7 LSQQMASAIIAAGQEEAQKNNWSVSIAVADDGGHLL 42 (134)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCEE
Confidence 4566666665 4557899999997 99999998654
No 241
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.19 E-value=2.6e+02 Score=20.14 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhh
Q psy14493 8 FEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEE 50 (318)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 50 (318)
+|..++..+..+++|+..... -...|++++..+..+.++
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~----Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTE----QQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 444445555555555443221 012455555555554443
No 242
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=22.74 E-value=1.3e+02 Score=24.22 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHHHhhhhhcCC-CcHHHHHHHHHHHHHhhhhh
Q psy14493 8 FEEPIIKLEKKIEKLRSLQFSSNI-DTSKEINDLVKKCNKLTEEI 51 (318)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~ 51 (318)
.+..|.+.+.++.+.+.-...+.. |-.++|.+.+.+|.+.+.++
T Consensus 68 ~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 68 RQQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAEL 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 344555555555544433333322 33458999998888877654
No 243
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=22.73 E-value=2.2e+02 Score=28.26 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCCchhHHhhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccc
Q psy14493 133 KPEGYRKAVRLMHIAEKFN-LPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVS 211 (318)
Q Consensus 133 ~~~~~~K~~r~~~~A~~~~-lPiV~lvDs~Ga~~~~~~e~~g~~~~~~~~~~~~s~~~vP~IavV~G~~~ggga~~~~~~ 211 (318)
|..+...++++++.++..+ .=+|.+.=.||..-. .-.|.. ..++ .++..+++|+||.|=.+ .
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eD--L~~Fn~-e~~~---rai~~~~~Pvis~iGHe-----------~ 230 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGGSLED--LWSFND-EKVA---RAIFLSKIPIISAVGHE-----------T 230 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHH--hhhcCc-HHHH---HHHHcCCCCEEEecCcC-----------C
Confidence 3455677788888777644 567888777665421 111111 2233 34567789999955333 3
Q ss_pred cEEEEEcccEEEEeChhHHHHhhhccc
Q psy14493 212 DITLMLQYAIYSVISPEGCASILWKTS 238 (318)
Q Consensus 212 D~via~~~A~i~v~gP~~~a~il~~~~ 238 (318)
|++++---|-+...-|..+++.+.++.
T Consensus 231 D~ti~D~vAd~ra~TPtaaae~~~p~~ 257 (432)
T TIGR00237 231 DFTISDFVADLRAPTPSAAAEIVSPNQ 257 (432)
T ss_pred CccHHHHhhhccCCCcHHHHHHhCccH
Confidence 444432224455566777777776653
No 244
>PRK04406 hypothetical protein; Provisional
Probab=22.67 E-value=2.6e+02 Score=20.73 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhh
Q psy14493 8 FEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEI 51 (318)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 51 (318)
+++++.+|+.++.-.....+. -.+.+-+|++.|.++++++
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~----LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEE----LNDALSQQQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 555666665555433332221 1124445555555554443
No 245
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=21.84 E-value=1.1e+02 Score=27.29 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=26.4
Q ss_pred EcCEEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 105 i~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
++++.+.|++|++.. ...+.|.+.|+|+..+-..
T Consensus 25 l~~~i~~visn~~~~----------------------~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 25 VNGDVVVVVTNKPGC----------------------GGAEYARENGIPVLVYPKT 58 (207)
T ss_pred CCeEEEEEEEeCCCC----------------------hHHHHHHHhCCCEEEeccc
Confidence 567889999998762 3478899999999876543
No 246
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=21.75 E-value=2.2e+02 Score=22.10 Aligned_cols=35 Identities=6% Similarity=0.163 Sum_probs=24.2
Q ss_pred EEEEEEeecCCCCccchhhccCCCCCHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 108 ESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 108 r~V~Vva~d~~~~~~~~~~~~gG~~~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
-...|+|+|.. + .-...+.++|...++|++.+..|
T Consensus 33 aklViiA~D~~---------------~---~~~~~i~~~c~~~~Ip~~~~~~t 67 (99)
T PRK01018 33 AKLVIVASNCP---------------K---DIKEDIEYYAKLSGIPVYEYEGS 67 (99)
T ss_pred ceEEEEeCCCC---------------H---HHHHHHHHHHHHcCCCEEEECCC
Confidence 35778888853 2 22346778899999999877543
No 247
>KOG2840|consensus
Probab=21.63 E-value=97 Score=29.76 Aligned_cols=47 Identities=28% Similarity=0.452 Sum_probs=34.2
Q ss_pred ceeecCccccCCCCchHHHHHHHHHHhhc--cCccccccCCCCCCCCCChH
Q psy14493 262 NKIIKEPIAYSGGIDSSVLLDISFTLFCN--YKIQFYVFHINHGLSPSSDK 310 (318)
Q Consensus 262 D~ii~~p~~~sgg~ds~~ll~~~~~l~~~--~~~~~~~~~~~h~~~~~~~~ 310 (318)
.+++. +|.|||.||.++-+.+..|-.. ++.++...-+.||++-..|+
T Consensus 51 ge~v~--igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~ 99 (347)
T KOG2840|consen 51 GERVA--IGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDD 99 (347)
T ss_pred CCccc--cccccchhHHHHHHHHHHhhhhcCCCceeeeeeccccccceecc
Confidence 34444 6999999999888766665555 56678788899999854443
No 248
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.62 E-value=1.5e+02 Score=30.00 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHHHhhhh---hcCCCcHHHHHHHHHHHHHhhhhh
Q psy14493 8 FEEPIIKLEKKIEKLRSLQF---SSNIDTSKEINDLVKKCNKLTEEI 51 (318)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~ 51 (318)
.+...++++.++++|+...+ ....+..++|++++..++.|++++
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777754333 222233448888888888888876
No 249
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=21.55 E-value=3.4e+02 Score=22.83 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=29.2
Q ss_pred cCEEEEEEeecCCCCccchhhccCCCCCHHHH-HHHHHHHHHHHhCCCcEEEEecC
Q psy14493 106 NGESCMVIGHQKGRNVNERIIRNFGMAKPEGY-RKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 106 ~Gr~V~Vva~d~~~~~~~~~~~~gG~~~~~~~-~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
+|..++|+.|+.++ ..| .+.... ....++..++...++|+..+.-+
T Consensus 44 ~Gy~IvIvTNQ~gi--------~~~-~~~~~~~~~~~ki~~il~~l~ip~~~~~a~ 90 (159)
T PF08645_consen 44 KGYKIVIVTNQSGI--------GRG-MGEKDLENFHEKIENILKELGIPIQVYAAP 90 (159)
T ss_dssp TTEEEEEEEE-CCC--------CCT-BTCCHHHHHHHHHHHHHHHCTS-EEEEECG
T ss_pred cCCeEEEEeCcccc--------ccc-cccchHHHHHHHHHHHHHHcCCceEEEecC
Confidence 57899999999986 333 333333 33356667788999998666654
No 250
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=21.26 E-value=3.1e+02 Score=25.56 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=29.1
Q ss_pred ccCCCCCH-HHHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy14493 127 RNFGMAKP-EGYRKAVRLMHIAEKFNLPIFTFIDTPGAFP 165 (318)
Q Consensus 127 ~~gG~~~~-~~~~K~~r~~~~A~~~~lPiV~lvDs~Ga~~ 165 (318)
++.||-.+ +..+++.++.+.|.++++|+|...=--|...
T Consensus 118 Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~ 157 (265)
T COG1830 118 VYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAI 157 (265)
T ss_pred EecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcc
Confidence 35555554 7888999999999999999988654444444
No 251
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=20.88 E-value=1.3e+02 Score=30.73 Aligned_cols=47 Identities=30% Similarity=0.362 Sum_probs=30.4
Q ss_pred CCcEEEEecCCCCCCchhHHhh----------------chHHHHHHHHHHHhcCCCCEEEEEc
Q psy14493 151 NLPIFTFIDTPGAFPGIDAEER----------------GQSEAIGHSIYVMSKLKVPLISTII 197 (318)
Q Consensus 151 ~lPiV~lvDs~Ga~~~~~~e~~----------------g~~~~~~~~~~~~s~~~vP~IavV~ 197 (318)
+.|-|+|+||||-.-=.....+ |...+.-..+.-+..++||.|.++.
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiN 115 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAIN 115 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEe
Confidence 7899999999994321222222 2234556666667777889887765
No 252
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=20.31 E-value=3.4e+02 Score=21.57 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHhhhhh
Q psy14493 13 IKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEI 51 (318)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 51 (318)
.++...++++++.........+++.++++++++.+.++.
T Consensus 15 ~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~ 53 (104)
T COG4575 15 AELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEA 53 (104)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 344444455555555444444456677777766665543
No 253
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=20.29 E-value=2e+02 Score=25.58 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=10.3
Q ss_pred HHhcCCCCEEEEEcCCCchhhhh
Q psy14493 184 VMSKLKVPLISTIIGEGGSGGAL 206 (318)
Q Consensus 184 ~~s~~~vP~IavV~G~~~ggga~ 206 (318)
.+...++|.|+ +.|+ -||...
T Consensus 165 ~L~~~~vP~I~-~~G~-kGGS~v 185 (198)
T PF02570_consen 165 ALMQSGVPYIT-VRGR-KGGSPV 185 (198)
T ss_dssp HHHHSTS-EEE-ESSS----HHH
T ss_pred HHHhCCCCEEE-EecC-CCCHHH
Confidence 34455799997 5666 344433
No 254
>PRK08227 autoinducer 2 aldolase; Validated
Probab=20.12 E-value=3e+02 Score=25.58 Aligned_cols=25 Identities=8% Similarity=0.453 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEe
Q psy14493 134 PEGYRKAVRLMHIAEKFNLPIFTFI 158 (318)
Q Consensus 134 ~~~~~K~~r~~~~A~~~~lPiV~lv 158 (318)
....+.+.++.+.|+++|+|+|.+.
T Consensus 123 ~~~l~~l~~v~~ea~~~G~Plla~~ 147 (264)
T PRK08227 123 HQSIKNIIQLVDAGLRYGMPVMAVT 147 (264)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 4677788899999999999999865
No 255
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.09 E-value=1.3e+02 Score=20.23 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=13.5
Q ss_pred ccchhhhHHHHHHHHHHHHhhh
Q psy14493 5 FLNFEEPIIKLEKKIEKLRSLQ 26 (318)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~ 26 (318)
+..-|+.+.++.++|++|+..+
T Consensus 14 ~d~IEqkiedid~qIaeLe~KR 35 (46)
T PF08946_consen 14 YDNIEQKIEDIDEQIAELEAKR 35 (46)
T ss_dssp -THHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHHHH
Confidence 3445666677777777776554
No 256
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=20.02 E-value=1.1e+02 Score=27.64 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy14493 133 KPEGYRKAVRLMHIAEKFNLPIFTFIDT 160 (318)
Q Consensus 133 ~~~~~~K~~r~~~~A~~~~lPiV~lvDs 160 (318)
-.+.+..+..+.++|+++++|++.+.|+
T Consensus 127 ~QEa~d~~~~A~~lAe~~~~PViv~~Dg 154 (230)
T PF01855_consen 127 PQEAYDMTLIAFNLAEKYQTPVIVLFDG 154 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEech
Confidence 3477778888999999999999999996
Done!