RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14493
(318 letters)
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 327
Score = 488 bits (1258), Expect = e-175
Identities = 140/274 (51%), Positives = 191/274 (69%), Gaps = 3/274 (1%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQI 60
+ L+FE+P+ ++ KIE L+ Q +++D +EI+ L + T++IY+ L PW
Sbjct: 10 PRGSMLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDR 69
Query: 61 SQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
QIAR +RP TLDYI IF ELHGDRN+ DD ++IG + +NG + VIG Q+G++
Sbjct: 70 VQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKD 129
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
+ I RNFGMA PEGYRKA+RLM AEKFN PIFTFIDT GA+PG AEERGQSE+I
Sbjct: 130 TKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIAT 189
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKR 240
++ M+ LKVP+I+ +IGEGGSGGAL I +++ LML+ + YSVISPEG A++LWK S
Sbjct: 190 NLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNL 249
Query: 241 ASDAAEALGLTADKLKSIGLINKIIKEPIAYSGG 274
A AAE + +TA +K +G+I+ +I EP+ GG
Sbjct: 250 AKIAAETMKITAHDIKQLGIIDDVISEPL---GG 280
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 484 bits (1247), Expect = e-174
Identities = 155/277 (55%), Positives = 204/277 (73%), Gaps = 6/277 (2%)
Query: 1 MKNIFLNFEEPIIKLEKKIEKLRSLQFSS---NIDTSKEINDLVKKCNKLTEEIYSKLTP 57
M FL+FE+PI +LE KI+ L + +I+ +E++ L +K +LT +I++ L
Sbjct: 21 MSLNFLDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGA 80
Query: 58 WQISQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQK 117
WQI+Q+ARHP+RPYTLDY+R F + EL GDR Y DD +I+G +AR++G M+IGHQK
Sbjct: 81 WQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQK 140
Query: 118 GRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEA 177
GR E+I RNFGM PEGYRKA+RLM +AE+F +PI TFIDTPGA+PG+ AEERGQSEA
Sbjct: 141 GRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEA 200
Query: 178 IGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKT 237
I ++ MS+L VP++ T+IGEGGSGGALAI V D MLQY+ YSVISPEGCASILWK+
Sbjct: 201 IARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKS 260
Query: 238 SKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGG 274
+ +A AAEA+G+ +LK + LI+ II EP+ GG
Sbjct: 261 ADKAPLAAEAMGIIRPRLKELKLIDSIIPEPL---GG 294
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 71.3 bits (175), Expect = 6e-14
Identities = 45/220 (20%), Positives = 83/220 (37%), Gaps = 33/220 (15%)
Query: 67 PKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
KRPY + I +F ++ E + YG ++ + G LA++NG VI + +G +N
Sbjct: 320 QKRPYDIYEVIARLFDNSEFSEYK--KGYGPEM-VTG-LAKVNGLLVGVIANVQGLLMNY 375
Query: 124 RIIRNFGMAK-----PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAI 178
+ + +G K + + + +P+ DT G G +AE+ +
Sbjct: 376 PEYKQNSVGIGGKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAE---LL 432
Query: 179 GHS---IYVMSKLKVPLISTIIGEGGSGGALAIAVS------DITLMLQYAI--YSVISP 227
G IY + K+P + I + A + + Y V+
Sbjct: 433 GLGQSLIYSIENSKLPSLEITI--RKASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPG 490
Query: 228 EGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKE 267
E A+ + R A+ G + IG +N +I+
Sbjct: 491 ETAANAM---YSRKLVKAKKAGEDLQPI--IGKMNDMIQM 525
Score = 42.4 bits (100), Expect = 1e-04
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 19/136 (13%)
Query: 87 HGDRNYGDDLSIIGVLARINGESCMVIGHQ---KGRNVNERIIRNFGMAKPEGYRKAVRL 143
+ +G +I+ L R++G+ ++ G P +R
Sbjct: 86 PENNKFGTT-NIVNGLGRVDGKWVYIVASDNKKMA-----------GAWVPGQAENLIRC 133
Query: 144 MHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIY---VMSKLKVPLISTIIGEG 200
A+ +LP+ ++ G + G + +++L +P+I I G
Sbjct: 134 SDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIVGIYGTN 193
Query: 201 GSGGALAIAVSDITLM 216
+GG ++S L+
Sbjct: 194 PAGGGYH-SISPTILI 208
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase,
PP-type, putative cell cycle PR PSI, protein structure
initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2
c.26.2.5 d.229.1.1
Length = 433
Score = 68.6 bits (168), Expect = 4e-13
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFC-NYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+A+SGG+DS+VLL N + H++HGLS ++D W+ HC+N
Sbjct: 18 VAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCEN 67
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump,
carboxyltransferase, lyase; 2.20A {Acidaminococcus
fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 68.6 bits (168), Expect = 5e-13
Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 30/225 (13%)
Query: 67 PKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
KR Y + I +F +++HE + YG ++ + G LA++NG V+ + +G +N
Sbjct: 317 DKRAYDIYNVIARLFDNSELHEYK--KGYGPEM-VTG-LAKVNGLLVGVVANVQGLLMNY 372
Query: 124 RIIRNFGMAK------PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEA 177
+ G +G K + + + LPI DT G G DAE+
Sbjct: 373 PEYKAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAE---L 429
Query: 178 IGHS---IYVMSKLKVPLISTIIGEGGSGGALAIAVS------DITLMLQYAI--YSVIS 226
+G IY + +P + A + + A +V++
Sbjct: 430 LGLGQSLIYSIQTSHIPQFEITL--RKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMN 487
Query: 227 PEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAY 271
E A+ ++ + + A D L K LI +
Sbjct: 488 GETAATAMY-SRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPK 531
Score = 47.0 bits (112), Expect = 5e-06
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 20/137 (14%)
Query: 86 LHGDRNYGDDLSIIGVLARINGESCMVIGHQ---KGRNVNERIIRNFGMAKPEGYRKAVR 142
G++N +I+ L R+NG+ C+V+ G P +R
Sbjct: 85 PQGNKNGSV--AIVKGLGRVNGKWCVVVASDNKKLA-----------GAWVPGQAECLLR 131
Query: 143 LMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIY---VMSKLKVPLISTIIGE 199
A+ ++P+ ++ G + G + +++L +P+I I G
Sbjct: 132 ASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGT 191
Query: 200 GGSGGALAIAVSDITLM 216
+GG ++S ++
Sbjct: 192 NPAGGGYH-SISPTVII 207
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 63.1 bits (154), Expect = 3e-11
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGL-SPSSDKWLIHCKN 317
+ SGG DS LL + +L +K+Q H++H S++ + K
Sbjct: 23 VGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKR 72
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A {Aquifex
aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Length = 317
Score = 60.7 bits (148), Expect = 8e-11
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKI-QFYVFHINHGLSPSSDKWLIHCKN 317
IA+SGG+DS VL D+ L + + + + H NH L S+++ CK
Sbjct: 29 IAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKE 78
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix, ligase;
HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B*
3u9t_B
Length = 555
Score = 53.7 bits (130), Expect = 3e-08
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 80 FTDIHELHGDRNYGDDL---SIIGVLARINGESCMVIGH---QKGRNVNERIIRNFGMAK 133
F ++ L YG+++ I+ + R+ G CM++G+ KG G
Sbjct: 90 FLELSALAAHEVYGEEVAAAGIVAGIGRVEGVECMIVGNDATVKG-----------GTYY 138
Query: 134 PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIY---VMSKLKV 190
P +K +R IA + LP +D+ GA E E G + MS +
Sbjct: 139 PLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSARGI 198
Query: 191 PLISTIIGEGGSGGALAIAVSDITLM 216
P I+ ++G +GGA A+SD T+M
Sbjct: 199 PQIAVVMGSCTAGGAYVPAMSDETVM 224
Score = 49.5 bits (119), Expect = 7e-07
Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 37/213 (17%)
Query: 67 PKRPYTLDYIREIFT------DIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
K+PY D +RE+ + E +G L + G A ++G I
Sbjct: 317 SKQPY--D-VREVIARLVDGSEFDEFK--ALFGTTL-VCG-FAHLHG---YPIA------ 360
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
I+ N G+ E +K + +A + +P+ + G G E G ++
Sbjct: 361 ----ILANNGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGQKYEAGGIAKHGAK 416
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIAVS------DITLMLQYAIYSVISPEGCASIL 234
+ ++ +VP + +I GGS GA + M A V+ E A +L
Sbjct: 417 LVTAVACARVPKFTVLI--GGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGGEQAAGVL 474
Query: 235 WKTSKRASDAAEALGLTADKLKSIGLINKIIKE 267
++ + AE G + + I+++
Sbjct: 475 ---AQVKREQAERAGQQLGVEEEAKIKAPILEQ 504
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima}
SCOP: c.14.1.4 c.14.1.4
Length = 527
Score = 53.3 bits (129), Expect = 4e-08
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 67 PKRPY-TLDYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
P + Y D I+ + E+ + ++ +IG ARI G++ ++ +Q
Sbjct: 290 PNKGYDVRDVIKRVVDHGEFFEVQ--PYFAKNI-VIG-FARIQGKTVGIVANQPSV---- 341
Query: 124 RIIRNFGMA---KPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
+A + KA R + + FN+PI TF+DTPG PG+ E G I H
Sbjct: 342 -------LAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGI---IRH 391
Query: 181 S---IYVMSKLKVPLISTIIGEGGSGGALAIAVS-----DITLMLQYAIYSVISPEGCAS 232
+Y S+ VP I+ I+ + GGA S D+ L A +V+ PEG A+
Sbjct: 392 GAKLLYAYSEATVPKITVILRK-AYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAAN 450
Query: 233 ILWKTSKRASDAAEAL 248
I++K AS E
Sbjct: 451 IIFKREIEASSNPEET 466
Score = 31.8 bits (73), Expect = 0.34
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 138 RKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAI------GHSIYVMSKL--K 189
+K V+L+ +A K +P+ D+ GA R Q E + G +
Sbjct: 120 KKIVKLLDLALKMGIPVIGINDSGGA--------RIQ-EGVDALAGYGEIFLRNTLASGV 170
Query: 190 VPLISTIIGEGGSGGALAIAVSDITLM 216
VP I+ I G G + A++D +M
Sbjct: 171 VPQITVIAGPCAGGAVYSPALTDFIVM 197
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 52.6 bits (127), Expect = 8e-08
Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 33/196 (16%)
Query: 67 PKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
+PY + I +I + E+H +++ ++ I+G ARI G ++ +
Sbjct: 285 AAKPYNMREIIYKIVDNGEFLEVH--KHWAQNI-IVG-FARIAGNVVGIVANNPEE---- 336
Query: 124 RIIRNFGMAK---PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
+ KA R + + FN+P+ + +DTPG PG D E +G I H
Sbjct: 337 -------FGGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGYVPGTDQEYKG---IIRH 386
Query: 181 S---IYVMSKLKVPLISTIIGEGGSGGALAIAVS-----DITLMLQYAIYSVISPEGCAS 232
+Y ++ VP I+ I+ + GGA D+ A +V PEG
Sbjct: 387 GAKMLYAFAEATVPKITVIVRK-SYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVR 445
Query: 233 ILWKTSKRASDAAEAL 248
IL++ + + + +
Sbjct: 446 ILYRKEIQQASNPDDV 461
Score = 31.8 bits (73), Expect = 0.28
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 17/87 (19%)
Query: 138 RKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAI------GHSIYVMSKL--K 189
K VR +A K P+ D+ GA R Q E G +
Sbjct: 113 NKIVRAYELALKVGAPVVGINDSGGA--------RIQ-EGALSLEGYGAVFKMNVMASGV 163
Query: 190 VPLISTIIGEGGSGGALAIAVSDITLM 216
+P I+ + G G + A++D +M
Sbjct: 164 IPQITIMAGPAAGGAVYSPALTDFIIM 190
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans}
Length = 531
Score = 51.8 bits (125), Expect = 1e-07
Identities = 47/201 (23%), Positives = 78/201 (38%), Gaps = 35/201 (17%)
Query: 67 PKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
P PY + I ++ D +E+ + ++ I G R+ G + V+ +Q
Sbjct: 298 PNTPYDMKELIHKLADEGDFYEIQ--EEFAKNI-ITG-FIRLEGRTVGVVANQPLV---- 349
Query: 124 RIIRNFGMAK---PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
+A + RKA R + + F +P+ T ID PG PG E G I H
Sbjct: 350 -------LAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFLPGTSQEYGG---VIKH 399
Query: 181 S---IYVMSKLKVPLISTIIGEGGSGGALAIAVS-----DITLMLQYAIYSVISPEGCAS 232
+Y + VP+++ I + GGA + S D A +V+ +G
Sbjct: 400 GAKLLYAYGEATVPMVTVITRK-AYGGAYVVMSSKHLRADFNYAWPTAEVAVMGAKGATE 458
Query: 233 ILWKTSKRASDAAEALGLTAD 253
I+ + D + TAD
Sbjct: 459 IIHR--GDLGDPEKIAQHTAD 477
Score = 32.1 bits (74), Expect = 0.24
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 138 RKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAI------GHSIYVMSKL--K 189
+K ++M +A + P+ D+ GA R Q E + G
Sbjct: 127 KKICKIMDMAMQNGAPVIGINDSGGA--------RIQ-EGVDSLAGYGEVFQRNIMASGV 177
Query: 190 VPLISTIIGEGGSGGALAIAVSDITLM 216
VP IS I+G G + A++D M
Sbjct: 178 VPQISMIMGPCAGGAVYSPAMTDFIFM 204
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase; HET:
MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 51.4 bits (124), Expect = 2e-07
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 33/196 (16%)
Query: 67 PKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNE 123
K+ Y D I +I D E+ Y +L + AR+NG S ++ +Q
Sbjct: 286 GKKGYDVRDVIAKIVDWGDYLEVK--AGYATNL-VTA-FARVNGRSVGIVANQPSV---- 337
Query: 124 RIIRNFGMA---KPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
M+ KA ++ + FN+P+ +D PG PG+ E G I H
Sbjct: 338 -------MSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGI---IRH 387
Query: 181 S---IYVMSKLKVPLISTIIGEGGSGGALAIAVS-----DITLMLQYAIYSVISPEGCAS 232
+Y S+ VP I+ ++ + GG+ + D A +V+ EG A+
Sbjct: 388 GAKMLYAYSEATVPKITVVLRK-AYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAAN 446
Query: 233 ILWKTSKRASDAAEAL 248
++++ +A+D +A+
Sbjct: 447 VIFRKEIKAADDPDAM 462
Score = 32.5 bits (75), Expect = 0.17
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 138 RKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAI------GHSIYVMSKL--K 189
K V M A P F D+ GA R Q E I G + KL
Sbjct: 117 TKVVETMEQALLTGTPFLFFYDSGGA--------RIQ-EGIDSLSGYGKMFFANVKLSGV 167
Query: 190 VPLISTIIGEGGSGGALAIAVSDITLM 216
VP I+ I G G + + A++D +M
Sbjct: 168 VPQIAIIAGPCAGGASYSPALTDFIIM 194
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 50.2 bits (120), Expect = 4e-07
Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 40/212 (18%)
Query: 63 IARHPKRPYTLDYIREI-----FTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQ- 116
+A P + F +I +++ AR+ G VI +
Sbjct: 384 LAGRPHPTLKGSWQSGFFDQGSFKEIMVPWAQ-------TVVTGRARLGGIPVGVIAAET 436
Query: 117 ------------KGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAF 164
+ + I + + P+ K + + + LP+ F + G
Sbjct: 437 RTVELVVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKLPLMIFANWRGFS 496
Query: 165 PGIDAEERGQSEAIGHS---IYVMSKLKVPLISTIIGEGGS-GGALAIAVSDITL--MLQ 218
G+ + + + K + P++ I GG+ A+ + I +
Sbjct: 497 GGMKDMYDQ---VLKFGAYIVDGLRKYRQPVLIYIPPYAEVRGGSWAVMDTSINPLCIEM 553
Query: 219 YA-----IYSVISPEGCASILWKTSKRASDAA 245
YA SV+ PEG I ++
Sbjct: 554 YADRESRA-SVLEPEGTVEIKYQKKDLVKTIR 584
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 6e-07
Identities = 51/408 (12%), Positives = 99/408 (24%), Gaps = 155/408 (37%)
Query: 9 EEPIIKLEKKIEKLRS----------------------------LQFSSNI-----DTSK 35
+P +KL + + +LR + I
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 36 EINDLVKKCNKLTEEIYSKLTPWQISQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDD 95
+++ KL ++ P S+ + I+ ++ L + Y +
Sbjct: 194 SPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQA---ELRRLLKSKPYENC 246
Query: 96 LSIIGVLARINGESCMVIGHQKGRNV-NERIIRNFGM---------------AKPEGYRK 139
L ++ NV N + F +
Sbjct: 247 LLVL-------------------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 140 AVRLMHIAEKFN----LPIF-TFIDT-PGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLI 193
+ L H + + ++D P P E + + P
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---------REVLTTN---------PRR 329
Query: 194 STIIGEGGSGGAL---------------AIAVS----DITLMLQY----AIY--SVISPE 228
+II E G I S + + +++ S P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 229 GCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYSGGIDSSVLLDISFTLF 288
S++W + + + +KL L+ K KE + I L
Sbjct: 390 ILLSLIWFDVIK-----SDVMVVVNKLHKYSLVEKQPKESTIS--------IPSIYLELK 436
Query: 289 CNYK---------IQFY----VFHINHGLSPSSDK---WLI--HCKNT 318
+ + Y F + + P D+ I H KN
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Score = 43.7 bits (102), Expect = 7e-05
Identities = 52/378 (13%), Positives = 103/378 (27%), Gaps = 145/378 (38%)
Query: 2 KNIFLNFEEPIIK-LE-KKIEKLRSLQFSSNIDTSKEINDLVKKCNKLT----------- 48
K+I FE+ + + K ++ +I + +EI+ ++ + ++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQ-----DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 49 --EEIYSKLT--------PWQISQIARHPKRPYTLDYIREIFTDIHELHGDRNYGDD--- 95
EE+ K + +S I ++P + ++ + DR Y D+
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIEQR----DRLYNDNQVF 126
Query: 96 -----------LSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRK----- 139
L + L + + +NV +I G+ G K
Sbjct: 127 AKYNVSRLQPYLKLRQALLEL----------RPAKNV---LI--DGVL---GSGKTWVAL 168
Query: 140 -AVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIG 198
+ K + IF +++ + P
Sbjct: 169 DVCLSYKVQCKMDFKIF-WLN-------------------------LKNCNSP------- 195
Query: 199 EGGSGGALAIAVSDITLMLQYAIYSVISPEGCA--SILWKTSKRASDAAEAL-GLTADKL 255
+ MLQ + I P + R L L K
Sbjct: 196 ------------ETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 256 KSIGLI-------NKIIKEPIAYSGGIDSSVLL---DISFTLFCNYKIQFYVF--HINHG 303
L+ K A++ +LL T F + ++ H +
Sbjct: 243 YENCLLVLLNVQNAKAWN---AFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 304 LSPSSD-----KWLIHCK 316
L+P K+L C+
Sbjct: 298 LTPDEVKSLLLKYL-DCR 314
Score = 28.3 bits (62), Expect = 4.1
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 28/101 (27%)
Query: 1 MKNIFLNFEEPIIKLEKKIEK--------------LRSLQF-----SSNIDTSKE-INDL 40
+ +FL+F LE+KI L+ L+F N + +N +
Sbjct: 493 FRMVFLDFR----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 41 VKKCNKLTEEIY-SKLTPWQISQIA-RHPKRPYTLDYIREI 79
+ K+ E + SK T + +IA + +++
Sbjct: 549 LDFLPKIEENLICSKYT--DLLRIALMAEDEAIFEEAHKQV 587
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 49.5 bits (119), Expect = 7e-07
Identities = 53/202 (26%), Positives = 78/202 (38%), Gaps = 44/202 (21%)
Query: 67 PKRPY-TLDYIREI-----FTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
+PY I + F + L N I+ R+ G +G
Sbjct: 292 ANQPYDMHSVIEHVLDDAEFFETQPLFA-PN------ILTGFGRVEGRP---VG------ 335
Query: 121 VNERIIRNFGMAK-----PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQS 175
I+ N M KA R + + FN+P+ TF+D PG PG+D E G
Sbjct: 336 ----IVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDG-- 389
Query: 176 EAIGHS---IYVMSKLKVPLISTIIGEGGSGGALAIAVS-----DITLMLQYAIYSVISP 227
I I+ ++ VPLI+ I + GGA + S D+ L A +V+
Sbjct: 390 -IIRRGAKLIFAYAEATVPLITVITRK-AFGGAYVVMGSKHLGADLNLAWPTAQIAVMGA 447
Query: 228 EGCASILW-KTSKRASDAAEAL 248
+G +IL +T A D AEA
Sbjct: 448 QGAVNILHRRTIADAGDDAEAT 469
Score = 32.9 bits (76), Expect = 0.15
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 138 RKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAI------GHSIYVMSKL--K 189
+K V++M A K P+ D+ GA R Q E + G +
Sbjct: 119 QKIVKVMDFALKTGCPVVGINDSGGA--------RIQ-EGVASLGAYGEIFRRNTHASGV 169
Query: 190 VPLISTIIGEGGSGGALAIAVSDITLM 216
+P IS ++G G + A++D T+M
Sbjct: 170 IPQISLVVGPCAGGAVYSPAITDFTVM 196
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
tepraloxydim, ATP-binding, biotin, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
1uyt_A 1uyv_A
Length = 758
Score = 49.1 bits (117), Expect = 1e-06
Identities = 31/181 (17%), Positives = 55/181 (30%), Gaps = 22/181 (12%)
Query: 97 SIIGVLARINGESCMVIGHQ-------------KGRNVNERIIRNFGMAKPEGYRKAVR- 142
++ AR+ G VIG + + I + P K +
Sbjct: 401 GVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQA 460
Query: 143 LMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGS 202
+ LP+ + G G + + + K P+I I G
Sbjct: 461 INDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGEL 520
Query: 203 -GGALAIAVSDI--TLMLQYAI----YSVISPEGCASILWKTSKRASDAAEALGLTADKL 255
GG+ + I M YA V+ P+G I ++ ++ D L +L
Sbjct: 521 RGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRR-EKLLDTMNRLDDKYREL 579
Query: 256 K 256
+
Sbjct: 580 R 580
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-06
Identities = 46/295 (15%), Positives = 87/295 (29%), Gaps = 98/295 (33%)
Query: 32 DTSKEINDLVKKCNKLTEEIYSKLTPWQISQIARH-PKRPYTL------DYIREIFTDIH 84
TSK D+ + + ++ Y + I I + P IRE ++
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYG----FSILDIVINNPVNLTIHFGGEKGKRIRENYS--- 1689
Query: 85 ELHGDRNYGDDLSIIGVLARINGESCMVI-GHQKGR-NVNE--------------RIIRN 128
+ + L + IN S +KG + + +++
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 129 FGMAKPE----G-----YRKAVRLMHIAEKFNLPIFTFIDTPGAFPGID-AEERGQS--- 175
G+ + G Y A L +A+ + + ++ RG +
Sbjct: 1750 KGLIPADATFAGHSLGEY-AA--LASLAD-----VMSIESL------VEVVFYRGMTMQV 1795
Query: 176 ----EAIGHSIYVMSKLKVPLISTIIGE-----------GGSGGALAIA---VSDITLML 217
+ +G S Y M + ++ + +G + I V +
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN----Q 1851
Query: 218 QYAIYSVISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKEPIAYS 272
QY V + G RA D + L KL+ I II+ + S
Sbjct: 1852 QY----VAA--G--------DLRALDTVTNV-LNFIKLQKI----DIIELQKSLS 1887
Score = 48.9 bits (116), Expect = 2e-06
Identities = 40/245 (16%), Positives = 81/245 (33%), Gaps = 67/245 (27%)
Query: 65 RHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVI-GHQK---GRN 120
+ + DY+ + T+ H L + + I + +NG +V+ G + G N
Sbjct: 342 SNLTQEQVQDYVNK--TNSH-LPAGK----QVEI----SLVNGAKNLVVSGPPQSLYGLN 390
Query: 121 VNERIIRNFGMAKPEGY---------RKAVRLMHIAEKFNLPIFTFIDTP-------GAF 164
+ R P G RK + +F LP+ +P A
Sbjct: 391 LTLR-----KAKAPSGLDQSRIPFSERKLK----FSNRF-LPVA----SPFHSHLLVPAS 436
Query: 165 PGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSV 224
I+ + + + +++P+ T G L + I+ + I +
Sbjct: 437 DLINKDLVKNNVSFNA-----KDIQIPVYDT-----FDGSDLRVLSGSISERIVDCI--I 484
Query: 225 ISPEGCASILWKTSKRASDAAEALGLTADKLKSIGLINKIIKE----PIAYSGGIDSSVL 280
P + W+T+ + A L +G++ K+ + +G +D +
Sbjct: 485 RLP-----VKWETTTQFK-ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Query: 281 LDISF 285
D F
Sbjct: 539 DDYGF 543
Score = 42.3 bits (99), Expect = 2e-04
Identities = 43/298 (14%), Positives = 83/298 (27%), Gaps = 96/298 (32%)
Query: 66 HPKRPYTLDY-------------------IREIFTDIHELHGDRNYGDD--LSIIGVLAR 104
+ RP TL + ++E F I + DD + ++ +
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 105 INGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVR--LMHIAEKF--NLPIFTFIDT 160
+G+ + +K + + + L + I
Sbjct: 64 F-------LGY---------VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA-- 105
Query: 161 PGAFPGIDAEERGQSEAIGHSIY-VMSKLKVPLISTIIGEGGSGGALAIAVSD--ITLM- 216
+ +++ + + K P + S AL AV + L+
Sbjct: 106 -AKLLQENDTTLVKTKELIKNYITARIMAKRPF------DKKSNSALFRAVGEGNAQLVA 158
Query: 217 --------------LQ--YAIY-SVISP--EGCASILWKTSKRASDAAEALGLTADKLKS 257
L+ Y Y ++ + A L + + DA +K+ +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA--------EKVFT 210
Query: 258 IGL-INKIIKEPIAYSGGIDSSVLLD--ISFTL-----FCNYKIQFYVFHINHGLSPS 307
GL I + ++ P D LL IS L +Y V G +P
Sbjct: 211 QGLNILEWLENPSNTP---DKDYLLSIPISCPLIGVIQLAHY----VVTAKLLGFTPG 261
Score = 38.9 bits (90), Expect = 0.002
Identities = 80/424 (18%), Positives = 131/424 (30%), Gaps = 167/424 (39%)
Query: 5 FLNFEEPIIKLEKKIEK---------LRSL--QFSSNIDTSKEINDLVKKCNKLTEEIYS 53
FL + + +E L +F + +I+ L K + +
Sbjct: 64 FLGY------VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 54 KLTPW-----QISQIARHP-----------------KRPYTL--------DY---IREIF 80
K +A+ P + + DY +R+++
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 81 TDIHELHGD--RNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYR 138
H L GD + + LS L R ++ V +G N+ + N + Y
Sbjct: 178 QTYHVLVGDLIKFSAETLS---ELIRTTLDAEKV--FTQGLNI-LEWLENPSNTPDKDY- 230
Query: 139 KAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERG--QSEAIGHSIYVMSKL--KVP--L 192
L+ I PI + P I G Q + H V +KL P L
Sbjct: 231 ----LLSI------PI--------SCPLI-----GVIQ---LAH-YVVTAKLLGFTPGEL 263
Query: 193 ISTIIGEGGSGG----ALAIAVSD------------ITLML------QYAIYSVISPEGC 230
S + G G A+AIA +D IT++ A Y S
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA-YPNTSLP-- 320
Query: 231 ASILWKTSKRASDAAEA--L---GLTADKLK----------------SIGLINKIIKEPI 269
SIL + S ++ + L LT ++++ I L+N
Sbjct: 321 PSIL-EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG----AK 375
Query: 270 AY--SG------GIDSSVL-------LDISFTLFCNYKIQFYV--------FHINHGLSP 306
SG G++ ++ LD S F K++F FH +H L P
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-SHLLVP 434
Query: 307 SSDK 310
+SD
Sbjct: 435 ASDL 438
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 45.3 bits (108), Expect = 2e-05
Identities = 35/144 (24%), Positives = 52/144 (36%), Gaps = 36/144 (25%)
Query: 67 PKRPY-TLDYIREI----FTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
P +PY + I + F +I + +N I+ RI+G +G
Sbjct: 308 PNQPYDMHEVITRLLDDEFLEIQAGYA-QN------IVVGFGRIDGRP---VG------- 350
Query: 122 NERIIRNFGMAK-----PEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSE 176
I+ N KA R + + FN+PI +D PG PG D E G
Sbjct: 351 ---IVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGI-- 405
Query: 177 AIGHS---IYVMSKLKVPLISTII 197
I +Y + VP I+ I
Sbjct: 406 -IRRGAKLLYAYGEATVPKITVIT 428
Score = 30.2 bits (69), Expect = 0.91
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 17/87 (19%)
Query: 138 RKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAI------GHSIYVMSKL--K 189
K V++ +A K P+ D GA R Q E +
Sbjct: 130 EKIVKVQELAIKTGRPLIGINDGAGA--------RIQ-EGVVSLGLYSRIFRNNILASGV 180
Query: 190 VPLISTIIGEGGSGGALAIAVSDITLM 216
+P IS I+G G + A++D +M
Sbjct: 181 IPQISLIMGAAAGGHVYSPALTDFVIM 207
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
heterodimer, pyrophosphate, G protein; HET: GDP AGS;
2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 41.7 bits (97), Expect = 2e-04
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 256 KSIGLINKIIKEP----IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGL 304
+SI +I ++ E + YS G DS+V+L ++ F K+ F V H++
Sbjct: 34 ESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 86
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 32.2 bits (72), Expect = 0.13
Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 13/135 (9%)
Query: 31 IDTSKEINDLVK---KCNKLTEEIYSK----LTPWQISQIARHPKRPYTLDYIREIFTDI 83
I+T KE+ + K + + I+++ + +S + R+PK L RE F +
Sbjct: 4 INT-KEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRM 62
Query: 84 HELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRL 143
+ + + ++ + + + +++ R
Sbjct: 63 WKWLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRP 122
Query: 144 -----MHIAEKFNLP 153
+ I+++ L
Sbjct: 123 SKELQITISQQLGLE 137
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex,
alpha / beta motif, protease, membr protein stomatin,
hydrolase-protein binding complex; 2.25A {Pyrococcus
horikoshii} PDB: 3bpp_A 2deo_A
Length = 230
Score = 31.9 bits (72), Expect = 0.17
Identities = 25/155 (16%), Positives = 40/155 (25%), Gaps = 34/155 (21%)
Query: 141 VRLMHIAEKFNLP-IFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGE 199
R + IAE+ N I +DTPG G I I + +
Sbjct: 28 DRYITIAEQDNAEAIIIELDTPG---GRA----DAMMNIVQRIQQSKIPVIIYVYPPGAS 80
Query: 200 GGSGGALAIAVSDITLMLQYAIYSVISP----EGCASILWKTSKRASD------------ 243
S G S + M P SI+ +
Sbjct: 81 AASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSLAQES 140
Query: 244 ----------AAEALGLTADKLKSIGLINKIIKEP 268
+ L LT ++ G+I + ++
Sbjct: 141 GRNATIAEEFITKDLSLTPEEALKYGVIEVVARDI 175
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 31.1 bits (70), Expect = 0.53
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 12/88 (13%)
Query: 1 MKNIFLN--FEE---PIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKL 55
++ +L FEE P+I E+ I K + + D L
Sbjct: 74 LRQAYLRMGFEEYINPVIVDERDIYKQ-------FGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 56 TPWQISQIARHPKRPYTLDYIREIFTDI 83
K + +++I
Sbjct: 127 DEKISQIEKLGIKVSEHKESLQKILHGY 154
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} SCOP: c.26.2.2
Length = 215
Score = 30.4 bits (69), Expect = 0.61
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHG 303
++ S GI ++V L L + V + G
Sbjct: 49 LSSSFGIQAAVSLH----LVNQIRPDIPVILTDTG 79
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 30.7 bits (70), Expect = 0.65
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 71 YTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVI 113
Y ++Y TDI L GD + G+D + AR G + I
Sbjct: 79 YKVNYAMN-ITDIGHLTGDLDDGED-KVAKT-AREKGLTVYEI 118
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 30.7 bits (69), Expect = 0.72
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 12/88 (13%)
Query: 1 MKNIFLN--FEE---PIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKL 55
++ +L FEE P+I E+ I K + + D L
Sbjct: 74 LRQAYLRMGFEEYINPVIVDERDIYKQ-------FGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 56 TPWQISQIARHPKRPYTLDYIREIFTDI 83
K + +++I
Sbjct: 127 DEKISQIEKLGIKVSEHKESLQKILHGY 154
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked
complex, oxidoreductase; 3.00A {Escherichia coli}
Length = 252
Score = 30.1 bits (68), Expect = 0.79
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHG 303
++ S GI ++V L L + V + G
Sbjct: 50 LSSSFGIQAAVSLH----LVNQIRPDIPVILTDTG 80
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP
pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP:
c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Length = 455
Score = 29.5 bits (67), Expect = 1.3
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 255 LKSIGLINKIIKEPIAYSGGIDSSVLL 281
LK + + +I IA+SGG+D+S L
Sbjct: 4 LKHLPVGQRIG---IAFSGGLDTSAAL 27
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 29.6 bits (66), Expect = 1.6
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 12/88 (13%)
Query: 1 MKNIFLN--FEE---PIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKL 55
++ +L FEE P+I E+ I K + + D L
Sbjct: 74 LRQAYLRMGFEEYINPVIVDERDIYKQ-------FGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 56 TPWQISQIARHPKRPYTLDYIREIFTDI 83
K + +++I
Sbjct: 127 DEKISQIEKLGIKVSEHKESLQKILHGY 154
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 29.4 bits (67), Expect = 1.9
Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 240 RASDAAEALGLTADKLKSIGLINKIIKEP---IAYSGGIDSSVLLD 282
+A+ + L L D+ ++ ++ P IA++ G++ V+ +
Sbjct: 419 QAAPTLDELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAE 464
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 29.2 bits (65), Expect = 2.4
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 12/88 (13%)
Query: 1 MKNIFLN--FEE---PIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKL 55
++ +L FEE P+I E+ I K + + D L
Sbjct: 74 LRQAYLRMGFEEYINPVIVDERDIYKQ-------FGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 56 TPWQISQIARHPKRPYTLDYIREIFTDI 83
K + +++I
Sbjct: 127 DEKISQIEKLGIKVSEHKESLQKILHGY 154
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 28.8 bits (65), Expect = 2.5
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 149 KFNLPIFTFIDTPG--AF 164
+ LP FIDTPG AF
Sbjct: 66 RETLPGLFFIDTPGHEAF 83
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.2
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 6/23 (26%)
Query: 231 ASI-LWKTSKRASDAAEALGLTA 252
AS+ L+ A D+A AL + A
Sbjct: 27 ASLKLY-----ADDSAPALAIKA 44
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA
methyltransferase, methanocaldococcus jannaschii DSM ,
PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Length = 203
Score = 27.8 bits (62), Expect = 4.0
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 269 IAYSGGIDSSVLL 281
+ +SGG DSS+
Sbjct: 11 VLFSGGKDSSLSA 23
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 27.7 bits (62), Expect = 4.4
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 6/49 (12%)
Query: 225 ISPEGCASILWKT---SKRASDAAEALG--LTADKLKSIGLINKIIKEP 268
+ EG ++ + + D + G I+K P
Sbjct: 155 LITEGGTTVSLPLKFGTNTTYECL-MFNKPFKYDIMCENGFISKNFNMP 202
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS
reductase, oxidoreductase; HET: A3P; 2.10A
{Saccharomyces cerevisiae}
Length = 261
Score = 27.6 bits (61), Expect = 5.3
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHG 303
+ G+ V +D+ L Y + + I+
Sbjct: 46 QTTAFGLTGLVTIDMLSKLSEKYYM-PELLFIDTL 79
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate,
citrulline, ST genomics, structural genomics consortium,
SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Length = 413
Score = 27.5 bits (62), Expect = 5.8
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 261 INKIIKEPIAYSGGIDSSVLL 281
++ +AYSGG+D+S +L
Sbjct: 5 KGSVV---LAYSGGLDTSCIL 22
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like,
phosphoprotein, protein transport, endocytosis; 1.70A
{Saccharomyces cerevisiae} PDB: 3ggz_A
Length = 193
Score = 26.9 bits (59), Expect = 6.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 120 NVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLP 153
+V E+II+ + P+ + L IA+ +++P
Sbjct: 150 DVPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVP 183
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1,
alternative splicing, phosphoprotein, protein binding;
1.80A {Homo sapiens} PDB: 3frs_A
Length = 191
Score = 26.8 bits (59), Expect = 7.2
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 120 NVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLP 153
VN+R++ + P L+ IA+ +N+P
Sbjct: 145 TVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVP 178
>1kor_A Argininosuccinate synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: ANP ARG; 1.95A {Thermus thermophilus}
SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A
1kh2_A* 1kh3_A* 1j20_A*
Length = 400
Score = 27.1 bits (61), Expect = 9.8
Identities = 8/12 (66%), Positives = 12/12 (100%)
Query: 270 AYSGGIDSSVLL 281
AYSGG+D+S++L
Sbjct: 6 AYSGGLDTSIIL 17
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.404
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,974,261
Number of extensions: 315159
Number of successful extensions: 902
Number of sequences better than 10.0: 1
Number of HSP's gapped: 870
Number of HSP's successfully gapped: 74
Length of query: 318
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 224
Effective length of database: 4,077,219
Effective search space: 913297056
Effective search space used: 913297056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)