RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14493
(318 letters)
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 250 bits (639), Expect = 1e-82
Identities = 152/268 (56%), Positives = 201/268 (75%), Gaps = 3/268 (1%)
Query: 5 FLNFEEPIIKLEKKIEKLRSLQ---FSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQIS 61
FL+FE+PI +LE KI+ L + +I+ +E++ L +K +LT +I++ L WQI+
Sbjct: 2 FLDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIA 61
Query: 62 QIARHPKRPYTLDYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
Q+ARHP+RPYTLDY+R F + EL GDR Y DD +I+G +AR++G M+IGHQKGR
Sbjct: 62 QLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRET 121
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
E+I RNFGM PEGYRKA+RLM +AE+F +PI TFIDTPGA+PG+ AEERGQSEAI +
Sbjct: 122 KEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEAIARN 181
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRA 241
+ MS+L VP++ T+IGEGGSGGALAI V D MLQY+ YSVISPEGCASILWK++ +A
Sbjct: 182 LREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKA 241
Query: 242 SDAAEALGLTADKLKSIGLINKIIKEPI 269
AAEA+G+ +LK + LI+ II EP+
Sbjct: 242 PLAAEAMGIIRPRLKELKLIDSIIPEPL 269
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 271
Score = 114 bits (285), Expect = 2e-30
Identities = 47/222 (21%), Positives = 79/222 (35%), Gaps = 21/222 (9%)
Query: 63 IARHPKRPYTL-DYIREIFTD-IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRN 120
I P +PY + + I + D E+ +I+ RI+G ++ +Q
Sbjct: 27 IPDSPNQPYDMHEVITRLLDDEFLEIQAGY----AQNIVVGFGRIDGRPVGIVANQP--- 79
Query: 121 VNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGH 180
G KA R + + FN+PI +D PG PG D E G
Sbjct: 80 -----THFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAK 134
Query: 181 SIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDITLMLQYAIYSVISPEGCASILWK 236
+Y + VP I+ I + G + D+ L A +V+ G +++
Sbjct: 135 LLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYR 194
Query: 237 TSKRASDAAEALGLTADKLKSIGLINKIIKEPI--AYSGGID 276
+ A AA + +L+ + P A G +D
Sbjct: 195 Q-QLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVD 235
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 404
Score = 115 bits (289), Expect = 5e-30
Identities = 32/208 (15%), Positives = 57/208 (27%), Gaps = 27/208 (12%)
Query: 69 RPYTLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQK--------- 117
R + +F E + ++ AR+ G VIG +
Sbjct: 36 RETESGFEYGLFDKGSFFETLSG--WAK--GVVVGRARLGGIPLGVIGVETRTVENLIPA 91
Query: 118 ---GRNVNERIIRNFGMA--KPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEER 172
N E +I+ G ++ A + LP+ + G G
Sbjct: 92 DPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFN 151
Query: 173 GQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIY-------SVI 225
+ + + K P+I I G G + V Q +Y V+
Sbjct: 152 EVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVL 211
Query: 226 SPEGCASILWKTSKRASDAAEALGLTAD 253
P+G I ++ K +
Sbjct: 212 EPQGMVGIKFRREKLLDTMNRLDDKYRE 239
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 104 bits (261), Expect = 4e-27
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 19/190 (10%)
Query: 63 IARHPKRPYTL-DYIREIFTD--IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGR 119
+ +P + Y + D I+ + E+ +I+ ARI G++ ++ +Q
Sbjct: 23 LPDNPNKGYDVRDVIKRVVDHGEFFEVQPYFA----KNIVIGFARIQGKTVGIVANQ--- 75
Query: 120 NVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIG 179
G+ + KA R + + FN+PI TF+DTPG PG+ E G
Sbjct: 76 -----PSVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGA 130
Query: 180 HSIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDITLMLQYAIYSVISPEGCASILW 235
+Y S+ VP I+ I+ + G +A+ +D+ L A +V+ PEG A+I++
Sbjct: 131 KLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANIIF 190
Query: 236 KTSKRASDAA 245
K AS
Sbjct: 191 KREIEASSNP 200
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 102 bits (254), Expect = 5e-26
Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 21/221 (9%)
Query: 63 IARHPKRPYTL-DYIREIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV 121
+ +PY + I + D + + I+ R+ G ++ +Q
Sbjct: 21 VPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPN--ILTGFGRVEGRPVGIVANQP---- 74
Query: 122 NERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHS 181
++ G KA R + + FN+P+ TF+D PG PG+D E G
Sbjct: 75 ----MQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKL 130
Query: 182 IYVMSKLKVPLISTIIGEGGSGGALAIA----VSDITLMLQYAIYSVISPEGCASILWKT 237
I+ ++ VPLI+ I + G + +D+ L A +V+ +G +IL +
Sbjct: 131 IFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRR 190
Query: 238 SKRASDAAEALGLTADKLKSIGLINKIIKEPI--AYSGGID 276
+ A A + + I + P A G +D
Sbjct: 191 TI----ADAGDDAEATRARLIQEYEDALLNPYTAAERGYVD 227
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 264
Score = 98.7 bits (245), Expect = 8e-25
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 19/189 (10%)
Query: 63 IARHPKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGR 119
+ K+ Y D I +I D E+ +++ AR+NG S ++ +Q
Sbjct: 23 VPIDGKKGYDVRDVIAKIVDWGDYLEVKAGY----ATNLVTAFARVNGRSVGIVANQ--- 75
Query: 120 NVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIG 179
G KA ++ + FN+P+ +D PG PG+ E G
Sbjct: 76 -----PSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGA 130
Query: 180 HSIYVMSKLKVPLISTIIGEGGSGGALAIA----VSDITLMLQYAIYSVISPEGCASILW 235
+Y S+ VP I+ ++ + G LA+ +D A +V+ EG A++++
Sbjct: 131 KMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIF 190
Query: 236 KTSKRASDA 244
+ +A+D
Sbjct: 191 RKEIKAADD 199
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 299
Score = 98.7 bits (245), Expect = 1e-24
Identities = 37/200 (18%), Positives = 71/200 (35%), Gaps = 19/200 (9%)
Query: 63 IARHPKRPY-TLDYIREIF--TDIHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGR 119
+ + KR Y + I +F +++HE YG ++ LA++NG V+ + +G
Sbjct: 25 VPLNDKRAYDIYNVIARLFDNSELHEYKKG--YGP--EMVTGLAKVNGLLVGVVANVQGL 80
Query: 120 NVNERIIRNF------GMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERG 173
+N + G +G K + + + LPI DT G G DAE+
Sbjct: 81 LMNYPEYKAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAE 140
Query: 174 QSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQY------AIYSVISP 227
IY + +P + +G + + + +V++
Sbjct: 141 LLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNG 200
Query: 228 EGCASILWKTSKRASDAAEA 247
E A+ ++ A
Sbjct: 201 ETAATAMYSRRLAKDRKAGK 220
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 60.0 bits (144), Expect = 5e-11
Identities = 36/267 (13%), Positives = 87/267 (32%), Gaps = 37/267 (13%)
Query: 5 FLNFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYSKLTPWQISQIA 64
+ + + ++ K ++K + +++ + ++ ++L +E A
Sbjct: 5 MPRYFQNMPQVGKPLKKA-------DAANEEQLKKIEEEIHQLIKEAQEAGKAD-----A 52
Query: 65 RHPKR---------PYTLDYI--REIFTDIHELHGDRNYGDDLSIIGVLARINGESCMVI 113
KR ++ R + T + G++N +I+ L R+NG+ C+V+
Sbjct: 53 DVNKRGELTALQRIEKLVEPGSWRPLNTLFNP-QGNKNGSV--AIVKGLGRVNGKWCVVV 109
Query: 114 GHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERG 173
+ P +R A+ ++P+ ++ G +
Sbjct: 110 ASDNKKLAG--------AWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYP 161
Query: 174 QSE---AIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGC 230
+++L +P+I I G +GG + + + A +V
Sbjct: 162 NRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIM 221
Query: 231 ASILWKTSKRASDAAEALGLTADKLKS 257
+ K A E + K+
Sbjct: 222 GGMNPKGHVDLEYANEIADMVDRTGKT 248
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 258
Score = 49.4 bits (117), Expect = 2e-07
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 8/158 (5%)
Query: 78 EIFTD---IHELHGDRNYGDDLSIIGVLARINGESCMVIGHQKGRNV---NERIIRNFGM 131
++ D EL + + G GR V ++ G
Sbjct: 44 DLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVFGGA 103
Query: 132 AKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVP 191
+K V++M A K P+ D+ GA G I S +P
Sbjct: 104 LGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASLGAYGEIFRRNTHASG-VIP 162
Query: 192 LISTIIGEGGSGGALAIAVSDITLMLQY-AIYSVISPE 228
IS ++G G + A++D T+M+ + + P+
Sbjct: 163 QISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPD 200
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 333
Score = 46.9 bits (111), Expect = 1e-06
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 17/121 (14%)
Query: 58 WQISQIARHPKRPYTLDYIREIFTDIHEL-HGDRNYGD-DLSIIGVLARI------NGES 109
W+ + A I + EL +R G + ++ + G
Sbjct: 42 WK-NFSADVKLTDDFFISNELIEDENGELTEVEREPGANAIGMVAFKITVKTPEYPRGRQ 100
Query: 110 CMVIGHQKGRNVNERIIRNFGMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDA 169
+V+ + I G P+ ++ A K +P GA G+
Sbjct: 101 FVVVAN--------DITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAE 152
Query: 170 E 170
E
Sbjct: 153 E 153
Score = 29.2 bits (65), Expect = 0.62
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 159 DTPGAFPGIDAEERGQSEAIGHSIYVMSKLKVPLISTIIGEGGSGGALAIAVSDITLM 216
G+ G+ E S I + + I+ + GA + + +
Sbjct: 211 TIIGSEDGLGVECLRGSGLIAGATSRAYH-DIFTITLVTCRSVGIGAYLVRLGQRAIQ 267
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 44.3 bits (103), Expect = 5e-06
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFC-NYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+A+SGG+DS+VLL N + H++HGLS ++D W+ HC+N
Sbjct: 18 VAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCEN 67
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 258
Score = 44.0 bits (103), Expect = 1e-05
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 12/126 (9%)
Query: 130 GMAKPEGYRKAVRLMHIAEKFNLPIFTFIDTPGAFPGIDAEERGQSEAIGHSIYVMSKLK 189
G K V++ +A K P+ D GA G I + + S
Sbjct: 103 GSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVSLGLYSRIFRNNILASG-V 161
Query: 190 VPLISTIIGEGGSGGALAIAVSDITLMLQYAIYSVISPEGCASILWKTSKRASDAAEALG 249
+P IS I+G G + A++D +M+ S ++ T
Sbjct: 162 IPQISLIMGAAAGGHVYSPALTDFVIMVD-----------QTSQMFITGPDVIKTVTGEE 210
Query: 250 LTADKL 255
+T ++L
Sbjct: 211 VTMEEL 216
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 37.4 bits (85), Expect = 8e-04
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+AYSGG+D+SV+L C + N G
Sbjct: 6 LAYSGGLDTSVILK----WLCEKGFDVIAYVANVGQKDDFVAIKEKALK 50
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 37.0 bits (84), Expect = 0.001
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+AYSGG+D+S++L L Y+ + F + G ++
Sbjct: 5 LAYSGGLDTSIILKW---LKETYRAEVIAFTADIGQGEEVEEAREKALR 50
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 216
Score = 36.1 bits (82), Expect = 0.003
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQF-YVFHINHGLSPSSDKWLIHC 315
IA+SGG+DS VL D+ L + ++ + H NH L S+++ C
Sbjct: 29 IAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFC 76
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 35.0 bits (79), Expect = 0.007
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHG 303
+ YS G DS+V+L ++ F K+ F V H++
Sbjct: 31 MLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR 65
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 32.2 bits (72), Expect = 0.050
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 258 IGLINKIIKEPIAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHCKN 317
+G+ K++ + SGGIDS V L + H + S
Sbjct: 1 VGVGGKVM---VLLSGGIDSPVAAY----LTMKRGVSVEAVHFHSPPFTSERAKQKVIDL 53
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 31.1 bits (69), Expect = 0.11
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 255 LKSIGLINKIIKEPIAYSGGIDSSVLLDI 283
LK + + +I IA+SGG+D+S L
Sbjct: 4 LKHLPVGQRIG---IAFSGGLDTSAALLW 29
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 29.0 bits (65), Expect = 0.43
Identities = 6/56 (10%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 9 EEPIIKLEKKIEKLRSLQFSSNIDTSKE-----INDLVKKCNKLTEEIYSKLTPWQ 59
E+ +L + ++++ + + + + L K+ + +++ +L +Q
Sbjct: 88 EDVRGRLVQYRGEVQA-MLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQ 142
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase
{Escherichia coli [TaxId: 562]}
Length = 215
Score = 28.9 bits (64), Expect = 0.58
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHG 303
++ S GI ++V L L + V + G
Sbjct: 49 LSSSFGIQAAVSLH----LVNQIRPDIPVILTDTG 79
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 28.9 bits (63), Expect = 0.64
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHGLSPSSDKWLIHC 315
+ SGG+DSSV + +V + L+ + +
Sbjct: 25 LGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFG 71
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
{Erwinia carotovora [TaxId: 554]}
Length = 230
Score = 28.0 bits (61), Expect = 1.2
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 269 IAYSGGIDSSVLLDISFTLFCNYKIQFYVFHINHG 303
+ +SGG DS+ L + ++G
Sbjct: 6 VVFSGGQDSTTCL----IQALQDYDDVHCITFDYG 36
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
9606]}
Length = 361
Score = 27.9 bits (61), Expect = 1.7
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 11 PIIKLEKKI--EKLRSLQFSSNIDTS--KEINDLVKKCNK--------LTEEIYSKLTPW 58
PI+ L+ ++ L S++ ID KEI D + L IYS P+
Sbjct: 287 PIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPF 346
Query: 59 QISQ 62
++
Sbjct: 347 EVRG 350
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 27.8 bits (60), Expect = 1.8
Identities = 7/64 (10%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 7 NFEEPIIKLEKKIEKLRSLQFSSNIDTSKEINDLVKKCNKLTEEIYS--KLTPWQISQIA 64
+F + + +++ + S+++ ++ ++ +C+KL +L+ ++ +A
Sbjct: 33 SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 92
Query: 65 RHPK 68
++
Sbjct: 93 KNSN 96
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 299
Score = 26.9 bits (58), Expect = 3.7
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 238 SKRASDAAEALGLTADKL-KSIGLINKIIKEPIAY-SGGIDSSVLLDISFTLFCNYKIQF 295
S+R EA+ L K++ P+ SGGIDSS + +
Sbjct: 4 SRRILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAAGELDTVS 63
Query: 296 YVFHINHGLSPSSDKWLIHC 315
++ +
Sbjct: 64 MGTDTSNEFREARAVVDHLR 83
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB
{Bordetella pertussis [TaxId: 520]}
Length = 68
Score = 25.0 bits (55), Expect = 3.8
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 7 NFEEPIIKLEKKIEKLRS--LQFSSNIDTSKEINDLVKKCNKLTEE 50
+FE + +LE + + + L ++ + +L + C +
Sbjct: 7 DFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQ 52
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 301
Score = 26.1 bits (57), Expect = 5.2
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 14 KLEKKIEKLRSLQ---FSSNIDTSKEINDLVKKCNKLTEEIYSK 54
+++K+ L++LQ F + E+ +L K + + I+ +
Sbjct: 22 NVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQ 65
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
[TaxId: 9606]}
Length = 222
Score = 25.7 bits (56), Expect = 6.3
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 15 LEKKIEKLRSLQ---FSSNIDTSKEINDLVKKCNKLTEEIYSK 54
++ IE + +Q N S+EI + +K NKL + + K
Sbjct: 28 QQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQK 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.404
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,217,557
Number of extensions: 58673
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 41
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)