BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14494
(470 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|399020171|ref|ZP_10722310.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. CF444]
gi|398095823|gb|EJL86155.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. CF444]
Length = 498
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 236/471 (50%), Positives = 329/471 (69%), Gaps = 7/471 (1%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+VYCVF++D++ILD L + G+ DRRIEFI I EL L+ LI+R+A A ++I
Sbjct: 32 QVYCVFVYDRDILDALLTDGLQADRRIEFILACIAELDAALRAAGGALIVRHAPAQQDIP 91
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L DAV NHDYEPQAI RD +KK+L+ G + +YKDQVIFEK+E+L+ +P
Sbjct: 92 ALAAELGADAVFANHDYEPQAIKRDAAVKKQLEQDGRQLLTYKDQVIFEKDEVLSLASRP 151
Query: 122 YSIFSFYQKKWIEKV--KSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
+S+F+ Y+ W+ K+ YL+ YPV +Y L SK H + + +L+DLGF
Sbjct: 152 FSVFTPYKNAWMNKLSGPGGDFYLKPYPVDAYFAQLAPPSKQH---HKALPTLDDLGFLP 208
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
+NL L I TG SGA LL +F+ ++ Y R++P++ G SYLS+HLRFGTI+IR LV+
Sbjct: 209 TNLKDLRIPTGMSGAAQLLEDFLPRLGKYGDTRDFPAVKGPSYLSVHLRFGTIAIRTLVR 268
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
++ G WLS+L+WRDFY MIL+ +P VV +SFK +YD I WE A
Sbjct: 269 AAVDAMR--IGAGRRGAPVWLSELVWRDFYFMILFHHPRVVERSFKSDYDAIQWEGGKRA 326
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+++F WC+G TGYPL+D+A++QLN +GYMHNRLRMVTASFL K++GI+W+WGE YFA++
Sbjct: 327 RESFAAWCEGRTGYPLVDAAMLQLNQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADQ 386
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
LNDFDL++NNG WQW++SSGC +QP+FRIFNPI QS++FD +G FIR+YLPQL+ L +KY
Sbjct: 387 LNDFDLSANNGGWQWASSSGCDAQPYFRIFNPITQSERFDAEGKFIRRYLPQLAGLPDKY 446
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
IH+PW + L+ AG+ LGK+YP P+++H+ ++K L RY +K L
Sbjct: 447 IHAPWLCPADLLKAAGVTLGKDYPLPLVDHAEARKRTLLRYAVVKKDLGEE 497
>gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
Length = 493
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 236/469 (50%), Positives = 332/469 (70%), Gaps = 16/469 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+VYCVFIFD+ ILD L DRR+EFI S++EL+ L+ LI+++A A I
Sbjct: 32 QVYCVFIFDRAILDALPR----ADRRVEFIHASLLELAQALRALGGGLIVQHAWAETAIP 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L I+L +DAV NHDYEPQAI RD + L+ G ++KDQV+FEKNE+L + KP
Sbjct: 88 ELAIELGVDAVFANHDYEPQAITRDAHVAAALQAAGRSLHTFKDQVVFEKNEVLTQAEKP 147
Query: 122 YSIFSFYQKKWIEKV--KSNKCYLQSYPVKSYLNNLVH--SSKLHKIINNNIISLNDLGF 177
+S+F+ Y+ W++K+ +SN+ L+ Y + +Y + V+ SK I SL DLGF
Sbjct: 148 FSVFTPYKNAWLKKLYAESNEATLRPYEIDAYADRFVNLPESKF------PIPSLTDLGF 201
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
K+NL L I TG GA+ LL+ F +++ Y+ R++P++ G SYLS+H+RFGT+SIR L
Sbjct: 202 EKTNLPDLNIPTGMQGAQDLLDAFADRMQRYDQTRDFPALKGPSYLSVHVRFGTVSIRAL 261
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ ++ T G WLS+L+WRDFY MIL+ +P+VV+ +FK +YD I WES +
Sbjct: 262 ARRALDAMRT--GTGGNGAAVWLSELVWRDFYFMILFQHPHVVDHAFKADYDAITWESGD 319
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+A++ F WC G TGYPL+D+A+ QLN +GYMHNRLRMVTASFLIK++GI+W+WGE+YFA
Sbjct: 320 HARRLFQAWCDGQTGYPLVDAAMAQLNQTGYMHNRLRMVTASFLIKDLGIDWRWGEHYFA 379
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KLNDFDLA+NNG WQW++SSGC +QP+FRIFNPI QS+KFD QG FIR+YLPQL+KLS+
Sbjct: 380 EKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPITQSEKFDQQGKFIRRYLPQLAKLSD 439
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
++IH+PW A + +L AG+ +G NYP P+++H ++ L+RY +K +
Sbjct: 440 RHIHAPWCAPALELRMAGVEIGNNYPGPLVQHDEARARTLQRYAVVKKV 488
>gi|398837372|ref|ZP_10594673.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. YR522]
gi|398208714|gb|EJM95423.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. YR522]
Length = 497
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 226/465 (48%), Positives = 318/465 (68%), Gaps = 7/465 (1%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V CVF+FD++ILD L + G+ +DRR++FI +S+ EL L+ LI+R+A A+ I
Sbjct: 32 QVSCVFVFDRDILDALAADGVGQDRRVDFILQSVTELDTALRGAGGGLIVRHASATAAIP 91
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L +L + AV N DYEPQA+ RD+ + L G FFS KDQVIFEK+EIL ++ P
Sbjct: 92 ELARQLGVQAVFANTDYEPQAVERDQAVADRLSKDGILFFSSKDQVIFEKDEILTRSDTP 151
Query: 122 YSIFSFYQKKWIEKVKS--NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
+S+F+ Y+ W+ ++ +L+ YPV Y LV + I S+ LGF
Sbjct: 152 FSVFTPYKNAWMARLAEADGDFFLKPYPVARYARALVPPPA---ALAQPIPSIAQLGFAP 208
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
SNL L I TG SGA LL++F+ +I Y R++P++ G SYLS+HLRFGT+SIR L +
Sbjct: 209 SNLDELKIPTGMSGADALLDDFLDRIGAYGTARDFPAVKGPSYLSVHLRFGTVSIRSLAR 268
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ + H G TWLS+L WRDFY MIL+ +P V ++FK +YD I WE A
Sbjct: 269 AALQAM--HAGRGAAGAATWLSELTWRDFYFMILHHHPRVARQAFKPDYDAIAWERGAQA 326
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ F WC+G TGYPL+D+A++Q+N SGYMHNRLRMV ASFL K++GI+W+WGE YFA
Sbjct: 327 ETLFAAWCEGRTGYPLVDAAMLQINQSGYMHNRLRMVVASFLTKDLGIDWRWGERYFAIH 386
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
LND+DL++NNG WQW++SSGC +QP+FRIFNP+ QS+KFD +G FIR+YLPQL+KL K
Sbjct: 387 LNDYDLSANNGGWQWASSSGCDAQPYFRIFNPVTQSEKFDAEGKFIRRYLPQLAKLPAKR 446
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
IH+PW A+ +L +AG++LG++YP+PI++H+ ++ L RY +K
Sbjct: 447 IHAPWTATPDELRQAGLVLGEDYPRPIVDHAQARATTLARYAVVK 491
>gi|340785990|ref|YP_004751455.1| deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331]
gi|340551257|gb|AEK60632.1| Deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331]
Length = 510
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 235/466 (50%), Positives = 318/466 (68%), Gaps = 7/466 (1%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V+CVF+FD +IL PL G+ DRR+EFI S+ EL + L+ L++R+ A I
Sbjct: 47 VFCVFVFDTDILQPLLDAGLGADRRVEFIRGSVTELDLELRKLGGGLLVRHGPAHDVIPA 106
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L ++AV NHDYEPQA RD + + L G + SYKDQVIFE E+L G+P+
Sbjct: 107 LARQLGVNAVFSNHDYEPQARQRDAGVARTLAADGRAWHSYKDQVIFECEEVLTMAGQPF 166
Query: 123 SIFSFYQKKWIEKVKS--NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
S+F+ Y+ W++++ + +L+ YP++ Y L I SL LGF K+
Sbjct: 167 SVFTPYKNAWMKRLAAADGSFFLKPYPIEKYAARLAPPPS---SPPEKIPSLAALGFKKT 223
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
NL L I G SGA LL +F+ ++ Y +R++P++ G SYLSIHLRFGTISIR L +L
Sbjct: 224 NLRELKIAPGMSGACGLLEDFMPRLGQYGQSRDFPAVKGPSYLSIHLRFGTISIRTLARL 283
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
++ + H G WLS+LIWRDFY MIL+ +P+V +FK EYD I WES A
Sbjct: 284 AYQAL--HQGAAAGGAAIWLSELIWRDFYFMILHHHPHVAGAAFKPEYDAIRWESGERAH 341
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
FL WC G TGYPL+D+A++QLN SGYMHNRLRMVTASFLIK++GI+W+WGE YFA +L
Sbjct: 342 SLFLAWCDGRTGYPLVDAAMLQLNQSGYMHNRLRMVTASFLIKDLGIDWRWGERYFAERL 401
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFDLA+NNG WQW+ASSGC +QP+FRIFNPI QS+KFD G FIR+YLPQLS L +++I
Sbjct: 402 NDFDLAANNGGWQWAASSGCDAQPYFRIFNPITQSEKFDADGKFIRRYLPQLSALGDRHI 461
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
H+PW A + +LE+AGI LG++YP P+++H ++K L+RY +K +
Sbjct: 462 HAPWLAPAQELERAGIRLGQDYPLPLVQHDEARKATLQRYAVVKTV 507
>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
Length = 495
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 230/467 (49%), Positives = 325/467 (69%), Gaps = 12/467 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+VYC FIFD+ ILD L S DRR+EFI S+ EL L+ LI+R+A A + I
Sbjct: 32 QVYCAFIFDRAILDELPST----DRRVEFIHASLQELDTALRALGGGLIVRHARAEQAIP 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L +L +DAV NHDYEPQAI RD + L G K +YKD VIFEK+E+L+++GKP
Sbjct: 88 QLAAELGVDAVFCNHDYEPQAIARDGAVAAALATDGRKLQTYKDHVIFEKDEVLSQSGKP 147
Query: 122 YSIFSFYQKKWIEKVKSN--KCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
+S+F+ Y+ W++K+ + + +Y + + H + L ++ I +L++LGF K
Sbjct: 148 FSVFTPYKNAWLKKLHTELAPADMPAYEIDTLR---AHFAPLPANLSG-IPALSELGFEK 203
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
+NL+ L I TG G + L ++FI ++ +Y+ R++P++ G SYLS+HLRFGT+SIR LV+
Sbjct: 204 TNLTELNIPTGMQGGQALFDDFIDRMPDYDSTRDFPAVKGPSYLSVHLRFGTVSIRALVR 263
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
++ G WLS+L+WRDFY MILY +P+V ++FK +YD I+WE+ +A
Sbjct: 264 RALDAMR--IGAGGTGAAVWLSELVWRDFYFMILYQHPHVRERAFKPDYDAIIWENGPHA 321
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
++ F WC G TGYPL+D+A+ QLN +GYMHNRLRMVTASFLIK++GI+W+WGE YFA K
Sbjct: 322 EELFQAWCDGRTGYPLVDAAMAQLNQTGYMHNRLRMVTASFLIKDLGIDWRWGERYFAEK 381
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
LNDFDLA+NNG WQW++SSGC +QP+FRIFNP+ QS+KFD G FIR+YLPQL KLS K
Sbjct: 382 LNDFDLAANNGGWQWASSSGCDAQPYFRIFNPLTQSEKFDPDGKFIRRYLPQLGKLSGKQ 441
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
IH+PW+ + +L+ AGI LG++YP P+L+H ++ L RY +K +
Sbjct: 442 IHAPWRVPALELQMAGITLGRDYPHPLLQHDEARARTLLRYAVVKKV 488
>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein
[Herbaspirillum seropedicae SmR1]
Length = 494
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 226/465 (48%), Positives = 316/465 (67%), Gaps = 7/465 (1%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V+CVF+FD +IL L+++G+ +DRRI+F+ S+ EL L++ LI+ + A +I
Sbjct: 32 QVWCVFVFDTDILAALKAEGVTQDRRIDFLLASVAELDEALRHAGGGLIVLHGSAVTQIP 91
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L++ AV N DYEP A+ RD + + L G + SYKDQVIFEK+E+L ++ KP
Sbjct: 92 ALAAELDVQAVYANTDYEPAAVERDAAVAQTLAKSGAQLLSYKDQVIFEKDEVLTQSAKP 151
Query: 122 YSIFSFYQKKWIEKVKS--NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
+S+F+ Y+ W+ K+ + +L+ YPV+ YL L + + S LGF
Sbjct: 152 FSVFTPYKNAWMSKLAAADGDFFLKPYPVEKYLTALASPPG---KAGHALPSHRQLGFAP 208
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
SNL L I TG SGA+ LL+ F+ +I +Y R++P++ G SYLS+HLRFGTISIR L +
Sbjct: 209 SNLQELKIPTGMSGAQSLLDEFLDRIGSYGAARDFPAVKGPSYLSVHLRFGTISIRTLAR 268
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ + H G WLS+L WRDFY MIL+ +P V +FK EYD I WE A
Sbjct: 269 AAMQAM--HAGQGAAGAAVWLSELTWRDFYFMILHHHPRVTRHAFKPEYDAIQWEQGPQA 326
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ F WC+G TGYPL+D+A+ Q+N SGYMHNRLRMV ASFL K++GI+W+WGE YFA
Sbjct: 327 EALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRLRMVVASFLTKDLGIDWRWGERYFARH 386
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
LNDFDLA+NNG WQW++SSGC +QP+FRIFNP+ QS+KFD G FIR+YLPQL+KLSNK
Sbjct: 387 LNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVTQSEKFDPDGKFIRRYLPQLAKLSNKR 446
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
IH+PW A+ + AG++LG+NYP+PI++H+ +++ L RY +K
Sbjct: 447 IHAPWTATPDERMDAGVVLGQNYPRPIVDHAQARERTLARYAVVK 491
>gi|409405685|ref|ZP_11254147.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103]
gi|386434234|gb|EIJ47059.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103]
Length = 497
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 221/464 (47%), Positives = 316/464 (68%), Gaps = 7/464 (1%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V+CVF+FD +ILD L+++G+++DRR++F+ S+ EL LQ LI+ A+ I
Sbjct: 33 VWCVFVFDTDILDALKAEGVVQDRRVDFLLASVAELDQALQKAGGGLIVLNGPAASCITN 92
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L + AV N DYEP A+ RD + + LK G + SYKDQVIFEK+E+L ++ +P+
Sbjct: 93 LAAELQVQAVFTNSDYEPAAVERDAAVAQALKKQGAQLLSYKDQVIFEKDEVLTQSARPF 152
Query: 123 SIFSFYQKKWIEKVKS--NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
S+F+ Y+ W+ ++ + YL+ YPV+ Y L + + + S LGF S
Sbjct: 153 SVFTPYKNAWMARLAAAGGDFYLKPYPVEKYFKALARPAA---KTPHGLPSHEALGFRPS 209
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
NL L I TG SGA+ LL +F+ +I Y R++P++ G SYLSIHLRFGT+SIR L +
Sbjct: 210 NLDELKIPTGMSGAEALLEDFLGRIGAYGTARDFPAVKGPSYLSIHLRFGTVSIRTLARA 269
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + H G WLS+L WRDFY MIL+ +P V +++FK EYD I WE +A+
Sbjct: 270 AMQAM--HAGQGAAGAAVWLSELTWRDFYFMILHHHPRVTDQAFKPEYDAIRWEQGQHAE 327
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+ F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV ASFL K++GI+W+ GE YFA L
Sbjct: 328 ELFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASFLTKDLGIDWRRGEKYFARHL 387
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFDL++NNG WQW++SSGC +QP+FRIFNP+ QS+KFD G FIR+YLPQL++LS+K I
Sbjct: 388 NDFDLSANNGGWQWASSSGCDAQPYFRIFNPVTQSEKFDPDGKFIRRYLPQLARLSDKRI 447
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H+PW A+ + AG+ LG+NYP+PI++H+ +++ L RY +K
Sbjct: 448 HAPWTATPDERLSAGVTLGQNYPRPIVDHAEARERTLARYAVVK 491
>gi|395005572|ref|ZP_10389447.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316]
gi|394316499|gb|EJE53223.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316]
Length = 487
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 223/470 (47%), Positives = 310/470 (65%), Gaps = 20/470 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ----NYDSDLIIRYAIASK 58
V+C F+FD ILDPL + DRR+EFI S+ EL L+ + LI+ +A+AS
Sbjct: 34 VHCAFVFDTEILDPLPKK----DRRVEFIRASLAELDERLRTLSGHATGGLIVLHAVASD 89
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
I L ++L +DAV NHD EPQA+ RD ++ L G F +YKD +FE+ E+L +T
Sbjct: 90 AIPALAVELGVDAVFTNHDDEPQALARDSRVRTRLAAAGRAFHTYKDHTVFERGEVLTQT 149
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
GKPYS+F+ Y+ W+ KV + YL+ YPV+ + + L K H + + L LGF
Sbjct: 150 GKPYSVFTPYKNAWLRKV--DAFYLKGYPVERHAHRLAPRPKAH---GHAVPPLAALGFE 204
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+ ++ + G SGA+ L +F ++I Y RN+P++ G SYLS+HLRFGTIS R L
Sbjct: 205 PAGMA---LPAGESGAQALFEDFQQRIGRYEDARNFPAVKGPSYLSVHLRFGTISPRLLA 261
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ K + G TWLS+L+WRDFY IL +P+VV SFK YD I WES
Sbjct: 262 RTAHGLAIKGNQ----GAATWLSELVWRDFYHQILAHHPHVVEHSFKPAYDAIAWESGPE 317
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
A++ F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV ASFL+K++GI+W+WGE YFA
Sbjct: 318 AQELFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASFLVKDLGIDWRWGEAYFAT 377
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
LNDFDLA+NNG WQW++SSGC +QP+FRIFNP+ QS+KFD +G FIRKYLPQL+ L +
Sbjct: 378 HLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEKFDARGQFIRKYLPQLATLPDA 437
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILN 468
+H+PWKA +L+ AG++LG YP PI++H +++ L+RY +K +
Sbjct: 438 ALHAPWKAKPLELQAAGVVLGSTYPHPIVDHDEARQRTLERYAVVKAAAD 487
>gi|337281072|ref|YP_004620544.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme)
[Ramlibacter tataouinensis TTB310]
gi|334732149|gb|AEG94525.1| Candidate deoxyribodipyrimidine photolyase (photoreactivating
enzyme) [Ramlibacter tataouinensis TTB310]
Length = 497
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 220/472 (46%), Positives = 318/472 (67%), Gaps = 22/472 (4%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINL----QNYDSDLIIRYAIAS 57
+V+CVF+FD ILD L Q DRR+EFI +S++EL L Q+ + LI+R+A A
Sbjct: 33 QVHCVFVFDTGILDALPRQ----DRRVEFIRESLVELDAALRAAAQDQGAGLIVRHAAAR 88
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
+EI +L +L + AV NHDYEPQA+ RD ++ L G +YKDQ IFE++E+L +
Sbjct: 89 QEIPRLARELGVQAVFANHDYEPQALARDAAVRGALADAGIALHTYKDQAIFERSEVLTQ 148
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
GKPY++F+ Y+ W+ K++ +L SYPV++Y L H+ + +L LGF
Sbjct: 149 AGKPYAVFTPYKNAWL--AKADAFFLSSYPVQAYAAALAPRPTPHR---QPVPALAQLGF 203
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+SNLS L + G SG + L F ++ Y+ +R++P++ G SYLS+HLRFGT+SIR+L
Sbjct: 204 ERSNLSELPLPVGMSGGRALFEEFRGRMGGYHQSRDFPAVRGPSYLSVHLRFGTVSIREL 263
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKS-----FKKEYDNIL 292
+ + G TWLS+LIWRDFY +L +P+VV++S F++EYD I
Sbjct: 264 ARTAHGLAQD----GDAGATTWLSELIWRDFYFQVLANFPHVVDESGQGHSFRREYDAIA 319
Query: 293 WESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWG 352
+E +A + F WC+G TGYPL+D+A++QLN +GYMHNRLRMVTASFL K++GI W+ G
Sbjct: 320 FERGAHADELFAAWCEGRTGYPLVDAAMLQLNQTGYMHNRLRMVTASFLCKDLGIAWQRG 379
Query: 353 ENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQL 412
E YFA +LND+DL++NNG WQW++SSGC +QP+FRIFNP+ QS+KFD +G FI KYLPQL
Sbjct: 380 ERYFALQLNDYDLSANNGGWQWASSSGCDAQPYFRIFNPVSQSRKFDPEGRFILKYLPQL 439
Query: 413 SKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ L +H+PW AS +L AG+ LG++YP P+++H +++ L+RY +K
Sbjct: 440 AGLPEAVLHAPWTASPVELAAAGLALGRDYPAPVVDHEAAREQTLRRYAVVK 491
>gi|386334355|ref|YP_006030526.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82]
gi|334196805|gb|AEG69990.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82]
Length = 548
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 217/464 (46%), Positives = 313/464 (67%), Gaps = 10/464 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV+C F+FD++ILDPL ++G+ DRR+EFI ++ L L+ +LI+ + A I
Sbjct: 78 EVFCAFVFDRDILDPLLARGLRADRRLEFIRAAVEALRGALREAGGELIVLHDHAHHAIP 137
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L ++AV NHD EP A+ RD +++ L C +F +KDQVIFE+ E+LN GKP
Sbjct: 138 SLAQQLGVEAVFANHDEEPAALARDAVVRDALARQPCAWFDFKDQVIFERAEVLNGQGKP 197
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y+ W+ V L++YP++ +L+ L ++ + + SL +GF +SN
Sbjct: 198 YGVFTPYKNAWLAAVSPFD--LRAYPIEPHLHAL---ARPPQGLAPATPSLEAMGFARSN 252
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS++ + TG SGA+ LL++F ++ +Y+ R+YP++ G SYLS HLRFGT+SIR L
Sbjct: 253 LSAIALPTGMSGAEALLDDFATRMDDYHARRDYPAMRGPSYLSTHLRFGTVSIRTLAARA 312
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
+ + G TWLS+LIWRDFY MIL+ P++ SF+ E+D I W
Sbjct: 313 HAAMLHGSR----GAATWLSELIWRDFYFMILHHRPDLAEGASFRPEFDRIRWVEGETGD 368
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W TGYPL+D+A++Q+ SGYMHNRLRMV ASFLIK++G++W+ GE+YFA+ L
Sbjct: 369 ARFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRMVAASFLIKDLGVDWRRGEHYFADAL 428
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFDLA+NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD QG FIRKYLPQL+KL ++Y+
Sbjct: 429 NDFDLAANNGGWQWAASSGCDAQPWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYL 488
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H+PW A + L+ AG+ LG+ YP+PI+EH+ ++ L+RY K
Sbjct: 489 HAPWTAPADVLKTAGVALGETYPRPIVEHAAARAATLERYAPAK 532
>gi|73540409|ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
JMP134]
gi|72117822|gb|AAZ60085.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
JMP134]
Length = 525
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 216/465 (46%), Positives = 313/465 (67%), Gaps = 7/465 (1%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV+CVF+FD++ILDPL ++G+ DRR++FI S+IEL L+ LI+ A+ I
Sbjct: 61 EVWCVFVFDRDILDPLLARGLKGDRRVDFIRASLIELDATLRAAGGGLIVMNDSAASAIP 120
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L + AV NHDYEP A+ RD ++ L F++KDQVIFE++EIL GKP
Sbjct: 121 ALARELGVQAVFANHDYEPDAVARDAAVRDSLAGDARVLFTFKDQVIFERDEILTSQGKP 180
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+++F+ Y+ W++ ++ L+ YP++ YL+ L + + SL DLGF SN
Sbjct: 181 FAVFTPYKNAWLKTIQPFD--LRPYPIEPYLHALAPLPSKRLV---PLPSLEDLGFAPSN 235
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L+ + + TG+SG + L F ++ +Y R+YP++ G SYLS+HLRFGT+SIR L +
Sbjct: 236 LAEVAMPTGSSGGQALFEEFTSRMGDYGRRRDYPALRGPSYLSVHLRFGTVSIRTLARAA 295
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
+ + D G TWLS+L+WRDFY MIL+ +P V ++F YD I W
Sbjct: 296 HGAVLRG-GADSAGAATWLSELVWRDFYFMILHHHPRVAAGEAFHPAYDIIRWRDGETGD 354
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+ F +W TGYPL+D+A++Q+ SGYMHNRLRMVTASFL+K++G++W+ GE+YFA++L
Sbjct: 355 RYFESWRDAATGYPLVDAAMLQIRQSGYMHNRLRMVTASFLVKDLGVDWRRGEHYFADQL 414
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFD A+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD QG FIRKYLPQL+ L +KY+
Sbjct: 415 NDFDFAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPQGRFIRKYLPQLAALPDKYV 474
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
H+PW A L AG+ LG+NYP+P+++H +++K L+RY +K
Sbjct: 475 HAPWTAPQDVLLAAGVRLGENYPRPLVQHDVARKETLERYAVVKE 519
>gi|421900163|ref|ZP_16330526.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum MolK2]
gi|206591369|emb|CAQ56981.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum MolK2]
Length = 522
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 216/460 (46%), Positives = 311/460 (67%), Gaps = 10/460 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV+C F+FD+ ILDPL ++G+ DRR+EFI ++ L L+ +LI+ + A I
Sbjct: 52 EVFCAFVFDRGILDPLLARGLRADRRVEFIRAAVEALRGALREAGGELIVLHDHAHHAIP 111
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L ++AV NHD EP A+ RD ++ L C +F +KDQVIFE+ E+LN GKP
Sbjct: 112 SLAQQLGVEAVFANHDEEPAALARDAAVRDALARQPCAWFDFKDQVIFERAEVLNGQGKP 171
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y+ W+ V L++YP++ +L+ L ++ + + SL +GF +SN
Sbjct: 172 YGVFTPYKNAWLAAVSPFD--LRAYPIEPHLHAL---ARPPQGLAPATPSLEAMGFARSN 226
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS++ + TG SGAK LL++F ++ +Y+ R+YP++ G SYLS HLRFGT+SIR L
Sbjct: 227 LSAIALPTGMSGAKALLDDFATRMDDYHARRDYPAVRGPSYLSTHLRFGTVSIRTLAAHA 286
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAK 300
+ + G TWLS+LIWRDFY MIL+ P++ + SF+ E+D I W +
Sbjct: 287 HAAMLHGSR----GAATWLSELIWRDFYFMILHHRPDLADGASFRPEFDRIRWVEGDAGD 342
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W TGYPL+D+A++Q+ SGYMHNRLRMV ASFLIK++G++W+ GE+YFA+ L
Sbjct: 343 VRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRMVAASFLIKDLGVDWRRGEHYFADAL 402
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFD A+NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD QG FIRKYLPQL+KL ++Y+
Sbjct: 403 NDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYL 462
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
H+PW A + L+ AG+ LG+ YP+PI+EH+ ++ L+RY
Sbjct: 463 HAPWTAPADVLKTAGVALGETYPQPIVEHAAARAATLERY 502
>gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
Length = 513
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 213/465 (45%), Positives = 314/465 (67%), Gaps = 7/465 (1%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V+CVF+FD+ IL PL ++G+ DRR+EFI +S+ L L++ LI+ A + I
Sbjct: 52 QVWCVFVFDREILAPLLARGLHADRRVEFILRSLEPLRRALEDSGGGLIVLDGTARQAIP 111
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L +L ++AV NHDYEP A RD+ +++ L ++KDQVIFE++EIL G+P
Sbjct: 112 RLAAELEVEAVFANHDYEPAANDRDEAVRRTLAADSRVLLTFKDQVIFERDEILTGQGRP 171
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+S+F+ Y+ W+ V+ L+ YP++ + L + ++ + +L DLGF +N
Sbjct: 172 FSVFTPYKNAWLRTVRPFD--LRPYPIEKHQETLAPVPQRYR---GQLPTLADLGFTATN 226
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L+ + + TG+ GA L + F+ +I +Y R++P++ G SYLS+HLRFGTISIR L +
Sbjct: 227 LAGIAMPTGSDGAHALFDEFLSRIGDYGRRRDFPAVRGPSYLSVHLRFGTISIRTLARAA 286
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
+ + G WLS+LIWRDFY MIL+ +P V KSF EYD + W +
Sbjct: 287 HDTMLRGGAA-SEGATVWLSELIWRDFYFMILHHHPRVAEGKSFHAEYDGLRWIAPATGD 345
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+ F WC TGYPLID+A++Q+ SGYMHNRLRMVTASFL+K++G++W+ GE YFA++L
Sbjct: 346 RYFAAWCDARTGYPLIDAAMLQIRQSGYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQL 405
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD QG FIR+YLP L+ L ++YI
Sbjct: 406 NDFDLAANNGGWQWAASTGCDAQPYFRIFNPVTQSEKFDPQGQFIRRYLPMLAALPDRYI 465
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
H+PW A + L AG+ LGK+YP+PI++H +++K L+RY +K+
Sbjct: 466 HAPWTAPNEVLRAAGVTLGKDYPRPIVQHDVARKETLERYGVVKS 510
>gi|365087758|ref|ZP_09327644.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. NO-1]
gi|363417381|gb|EHL24461.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. NO-1]
Length = 496
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 220/467 (47%), Positives = 318/467 (68%), Gaps = 17/467 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSD----LIIRYAIAS 57
+V+C F+FDK+ILD L DRR+EFI +S++EL L+ LI+ +A+AS
Sbjct: 39 QVFCAFVFDKDILDALPRA----DRRVEFIRESLVELDETLRALSGQERGGLIVWHAVAS 94
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
I L L++ AV NHD EPQA+ RD+L++ L G F ++KD + E++E+L +
Sbjct: 95 DAIPALASALDVQAVFANHDDEPQALDRDRLVRTRLAAAGKAFHTFKDHTLLERSEVLTQ 154
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
TG PYS+F+ Y+ W++K+ + + LQSYPV+ + ++L + + + +L DLGF
Sbjct: 155 TGNPYSVFTPYKNAWLKKIDAFQ--LQSYPVERHAHHLAARPEGY---CQPVPTLQDLGF 209
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ LS L + TGA GA+ L ++F+ +++ Y RN+P++ G SYLS+HLRFGTIS R L
Sbjct: 210 EPTALSQLRLPTGARGAQQLFDDFLGRVERYEDTRNFPAVKGPSYLSVHLRFGTISPRLL 269
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + +++ G TWLS+LIWRDFY IL+ +P+VV +SFK YD I WE+
Sbjct: 270 ARTAHRLMQEGNP----GATTWLSELIWRDFYFQILHHHPHVVGQSFKPAYDAIAWETGP 325
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV ASFL+K++GI+W+ GE YFA
Sbjct: 326 EADALFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASFLVKDLGIDWRRGEAYFA 385
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
LNDFDLA+NNG WQW++SSGC +QP+FRIFNP+ QS+KFD +G FIR+YLPQL+ LS
Sbjct: 386 THLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEKFDPEGKFIRRYLPQLAGLSA 445
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
K +H+PW A +L++AG+ LG YP P++EH ++ L+RY +K
Sbjct: 446 KALHAPWLARPLELQEAGVRLGDTYPLPVVEHDAARHRTLERYAVVK 492
>gi|407940619|ref|YP_006856260.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
gi|407898413|gb|AFU47622.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
Length = 496
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 220/468 (47%), Positives = 318/468 (67%), Gaps = 17/468 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSD----LIIRYAIAS 57
+V+C F+FDK+ILD L DRR+EFI +S++EL L+ LI+ +A+AS
Sbjct: 39 QVFCAFVFDKHILDALPRA----DRRVEFIRESLVELDDTLRELSGQERGGLIVWHAVAS 94
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
I LV L++ AV NHD EPQA+ RD+L++ L G F ++KD + E++E+L +
Sbjct: 95 DAIPALVSALDVQAVFANHDDEPQALDRDRLVRTRLAAAGKAFHTFKDHTLLERSEVLTQ 154
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
TG PYS+F+ Y+ W++K+ + + L+SYPV+ + ++L + H + +L DLGF
Sbjct: 155 TGNPYSVFTPYKNAWLKKIDAFQ--LKSYPVERHAHHLAARPEAH---CQPVPTLQDLGF 209
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
++LS L + TGA GA+ L ++F+ +I+ Y RN+P++ G SYLS+HLRFGTIS R L
Sbjct: 210 EPTDLSQLRLPTGARGAQQLFDDFLGRIERYEDTRNFPAVKGPSYLSVHLRFGTISPRLL 269
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + + + G TWLS+LIWRDFY IL+ +P+VV +SFK YD I WE+
Sbjct: 270 ARTAHRLMLEGNP----GATTWLSELIWRDFYFQILHHHPHVVGQSFKPAYDAIAWETGP 325
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV ASFL+K++GI+W+ GE YFA
Sbjct: 326 EADALFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASFLVKDLGIDWRRGEAYFA 385
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
LNDFDLA+NNG WQW++SSGC +QP+FRIFNP+ QS+KFD +G FIR+YLP L+ L
Sbjct: 386 THLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEKFDPEGKFIRRYLPLLAALPT 445
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
K +H+PW A +L++AG+ LG YP P++EH +++ L+RY +K
Sbjct: 446 KALHAPWLARPLELQEAGVRLGDTYPLPVVEHDAARQRTLERYAVVKT 493
>gi|430807586|ref|ZP_19434701.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
gi|429500109|gb|EKZ98493.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
Length = 518
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 213/465 (45%), Positives = 310/465 (66%), Gaps = 7/465 (1%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V+CVF+FD+ IL PL ++G+ DRR+EFI +++ L L++ LI+ A + I
Sbjct: 52 QVWCVFVFDREILAPLLARGLHADRRVEFILRTLEPLRRALEDSGGGLIVLDGTARQAIP 111
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L +L ++AV NHDYEP A RD +++ L ++KDQVIFE++EIL G+P
Sbjct: 112 RLAAELEVEAVFANHDYEPAANARDDAVRRTLAADSRVLLTFKDQVIFERDEILTGQGRP 171
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+S+F+ Y+ W+ V+ L+ YP+ YL L + ++ +L DLGF +N
Sbjct: 172 FSVFTPYKNAWLRTVRPFD--LRPYPIGKYLEALAPVPQRYR---GQWPTLADLGFTATN 226
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L+ + + TG+ GA L + F+ +I +Y R++P++ G SYLS+HLRFGTISIR L +
Sbjct: 227 LAGIAMPTGSDGAHALFDEFLPRIGDYGRRRDFPAVRGPSYLSVHLRFGTISIRTLARAA 286
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
+ + G WLS+LIWRDFY MIL+ +P V KSF EYD + W +
Sbjct: 287 HDAMLRGGAA-SEGAAVWLSELIWRDFYFMILHHHPRVAEGKSFHPEYDALRWIAPATGD 345
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+ F WC TGYPLID+A++Q+ SGYMHNRLRMVTASFL+K++G++W+ GE YFA++L
Sbjct: 346 RYFAAWCDAQTGYPLIDAAMLQIRQSGYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQL 405
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD QG FIRKYLP L+ L ++Y+
Sbjct: 406 NDFDLAANNGGWQWAASTGCDAQPYFRIFNPVTQSEKFDPQGQFIRKYLPMLAALPDRYV 465
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
H+PW A L AG+ LG++YP+PI++H +++K L+RY +K
Sbjct: 466 HAPWTAPEEVLRAAGVKLGEDYPRPIVQHDVARKETLERYGVVKE 510
>gi|83746230|ref|ZP_00943284.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
gi|83727196|gb|EAP74320.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
Length = 560
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 215/464 (46%), Positives = 309/464 (66%), Gaps = 10/464 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV+C F+FD+ ILDPL + G+ DRR+EFI ++ L L+ +LI+ + A I
Sbjct: 90 EVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAVEALRGALREAGGELIVLHDHAHHAIP 149
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L ++AV NHD EP A+ RD ++ L C + +KDQVIFE+ E+LN GKP
Sbjct: 150 SLAQQLGVEAVFANHDEEPAALARDAAVRDALARQPCAWLDFKDQVIFERAEVLNGQGKP 209
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y+ W+ V L++YP++ +L+ L ++ + + SL +GF +SN
Sbjct: 210 YGVFTPYKNAWLAAVSPFD--LRAYPIEPHLHAL---ARPPQGLAPATPSLEAMGFARSN 264
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS++ + TG SGA+ LL++F ++ +Y+ R+YP++ G SYLS HLRFGT+SIR L
Sbjct: 265 LSAIALPTGMSGAEALLDDFATRMDDYHARRDYPAVRGPSYLSTHLRFGTVSIRTLAAHA 324
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAK 300
+ + G TWLS+LIWRDFY MIL+ P++ SF+ E+D I W +
Sbjct: 325 HAAMLHGSR----GAATWLSELIWRDFYFMILHHRPDLAGGASFRPEFDRIRWVDGDAGD 380
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W TGYPL+D+A++Q+ SGYMHNRLRMV ASFLIK++G++W+ GE+YFA+ L
Sbjct: 381 VRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRMVAASFLIKDLGVDWRRGEHYFADAL 440
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFD A+NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD QG FIRKYLPQL+KL ++Y+
Sbjct: 441 NDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYL 500
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H+PW A + L+ AG+ LG+ YP+PI+EH+ ++ L+RY K
Sbjct: 501 HAPWTAPADVLKTAGVALGETYPRPIVEHAAARAATLERYAPAK 544
>gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
Length = 513
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 220/464 (47%), Positives = 313/464 (67%), Gaps = 7/464 (1%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V+CVF+FD+ ILDPL ++G DRR+EFI +S+ L L + LI+ IA I
Sbjct: 53 QVWCVFVFDREILDPLIARGRKVDRRVEFILRSLEPLRRTLTDAGGGLIVLDDIARDAIP 112
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L +L+ DAV NHDYEP A RD +++ L F++KDQVIFE +E+L G+P
Sbjct: 113 RLAAELDADAVFTNHDYEPAAKRRDTAVRQALASDSRVLFTFKDQVIFEADELLTGQGQP 172
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+S+F+ Y+ W+ V+ L+ YPV YL L + ++ + L+DLGF SN
Sbjct: 173 FSVFAPYKNAWLRAVQPFD--LRPYPVDQYLGALAPVPRQYQKASP---MLHDLGFAASN 227
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L+ + + TG+ GA+ L + FI +I +Y R++PS+ G SYLS+HLRFGTISIR L +
Sbjct: 228 LAEIAMPTGSDGARALFDEFIDRIGDYGYRRDFPSLRGPSYLSVHLRFGTISIRTLARAA 287
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAK 300
+ + ++ G WLS+LIWRDFY MIL+ +P V + KSF+ EYD + W
Sbjct: 288 LDAVLRG-GSESAGAAVWLSELIWRDFYFMILHHHPRVADGKSFRPEYDALQWVDSVTGD 346
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
K F WC TGYPL+D+A++Q+ SGYMHNRLRMVTASFL+K++G++W+ GE YFA++L
Sbjct: 347 KYFQAWCDAQTGYPLVDAAMLQIRQSGYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQL 406
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFD ++NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD QG FIRKYLP L+++ ++YI
Sbjct: 407 NDFDFSANNGGWQWAASTGCDAQPYFRIFNPVKQSEKFDPQGRFIRKYLPVLAQMPDQYI 466
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H+PW A L AG+ LG+NYP PI++H +++K L+RY I+
Sbjct: 467 HAPWTAPVNVLATAGVKLGENYPPPIVQHEVARKQTLERYAAIR 510
>gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
Length = 493
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 225/467 (48%), Positives = 319/467 (68%), Gaps = 16/467 (3%)
Query: 3 VYCVFIFDKNILDPL------RSQGI-IEDRRIEFIFKSIIELSINLQNYDSDLIIRYAI 55
V+CVF+FD IL PL R G +DRR+EFI S+ EL L+ LI+ Y
Sbjct: 34 VWCVFVFDTTILQPLIDTWQARHPGAPAQDRRVEFILASLRELDDALRAQGGGLIVLYGD 93
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
+ + KL +L +DAV NHDYEP AI RD+ +++ L G ++KDQVIFE+ E+L
Sbjct: 94 PADLVPKLADELRVDAVFANHDYEPAAIERDETVRERLAEAGRACLTFKDQVIFERAELL 153
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
KP+++F+ Y+ W++++ S YL+ YPV++Y N L + L +N + +L L
Sbjct: 154 TGQNKPFTVFTPYKNAWLKQLTS--FYLKPYPVETYANRL---AALPPGLNRQLPTLEQL 208
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF NL+ L + TG SGA+ LL++F+ +I +Y R++P+ G SYLS+HLRFGT+SIR
Sbjct: 209 GFAPGNLAELDLPTGMSGAQRLLDDFVTRIASYAERRDFPAARGPSYLSVHLRFGTVSIR 268
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWE 294
L +L + + D G TWLS+LIWRDFY MIL +P + + SFK+EYD + WE
Sbjct: 269 TLARLAHEI---SLQPDGRGAATWLSELIWRDFYFMILSHHPRLASGASFKQEYDALRWE 325
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
A F WC+G TGYPLID+A++QLN +GYMHNRLRMVTASFL+K++GI+W+ GE
Sbjct: 326 QGPAADAAFAAWCEGRTGYPLIDAAMLQLNRTGYMHNRLRMVTASFLVKDLGIDWRRGER 385
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YFA++LND+DLA+NNG WQW+AS+GC +QP+FRIFNPI QS+KFD G FI++YLPQL+K
Sbjct: 386 YFADQLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPITQSEKFDADGRFIKRYLPQLAK 445
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
L K++H+PW A + KL G++LG++YP+PI++H+ ++ L R+
Sbjct: 446 LPAKWVHAPWLAGAQKLAAFGVVLGEDYPQPIVDHAQARARTLARFG 492
>gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001]
gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp.
CCGE1001]
Length = 499
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 220/467 (47%), Positives = 313/467 (67%), Gaps = 16/467 (3%)
Query: 3 VYCVFIFDKNILDPL------RSQGI-IEDRRIEFIFKSIIELSINLQNYDSDLIIRYAI 55
V+CVF+FD IL PL R G +DRR+EFI S+ EL L+ L++ Y
Sbjct: 40 VWCVFVFDTTILQPLVDRWQTRHPGTQAQDRRVEFILGSLRELDEALRAQGGGLVVLYGD 99
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
+ + KL +L +DAV INHDYEP AI RD+ +++ L G F ++KDQVIFE+ E+L
Sbjct: 100 PADLVPKLADQLQVDAVFINHDYEPAAIERDEAVRERLAETGRTFLTFKDQVIFERAELL 159
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
KP+++F+ Y+ W++++ S L+ YPV++Y L + L ++ + +L L
Sbjct: 160 TGQKKPFTVFTPYKNAWLKQLTSFD--LKPYPVETYATRL---ASLPPALDRQLPTLEQL 214
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF NL+ L + TG GA+ LL++F+ ++ +Y R++P++ G SYLS+HLRFGT+SIR
Sbjct: 215 GFAPGNLAELDLPTGMRGAQRLLDDFLTRLDSYAERRDFPAVKGPSYLSVHLRFGTVSIR 274
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWE 294
L +L + + D G TWLS+LIWRDFY MIL +P + SFK+EYD + WE
Sbjct: 275 TLARLAHEM---SLQPDGRGAATWLSELIWRDFYFMILAHHPRLAGGASFKEEYDRLRWE 331
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
A F WC+G TGYPLID+A++QLN +GYMHNRLRMVTASFL+K++G++W+ GE
Sbjct: 332 QGPEADAAFAAWCEGRTGYPLIDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGER 391
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YFA +LND+D A+NNG WQW+AS+GC +QP+FRIFNPI QS+KFD G FI++YLPQL K
Sbjct: 392 YFAEQLNDYDFAANNGGWQWAASTGCDAQPYFRIFNPITQSEKFDADGRFIKRYLPQLGK 451
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
L K+IH+PW A + +L + G+ LG NYP PI++H+ ++ L R+
Sbjct: 452 LPAKWIHAPWLAGAQRLAEFGVALGDNYPAPIVDHAQARARTLARFG 498
>gi|194290487|ref|YP_002006394.1| deoxyribodipyrimidine photolyase (photoreactivation), fad-binding
[Cupriavidus taiwanensis LMG 19424]
gi|193224322|emb|CAQ70333.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Cupriavidus taiwanensis LMG 19424]
Length = 519
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 219/470 (46%), Positives = 320/470 (68%), Gaps = 7/470 (1%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V+CVF+FD++IL+PL ++G+ DRRIEFI +S++EL+ L LI+ + A I
Sbjct: 48 QVWCVFVFDRDILEPLLARGLQADRRIEFIRQSLVELAGTLAAAGGGLIVLHDRAQTAIP 107
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L L+ +AV NHDYEP A RD+ +++ L C F++KDQ IFE++EILN GKP
Sbjct: 108 ALARALDAEAVFANHDYEPAANARDEAVRQALAAQACALFTFKDQAIFERDEILNGQGKP 167
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+S+F+ Y+ W+ + L+ YPV+ YL L +++ + ++ LGF SN
Sbjct: 168 FSVFTPYKNAWLRAAEPFD--LRPYPVEPYLPALAPVPAAYRL---PVPTIAQLGFRASN 222
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L+ + + TGASGA+ L F ++ +Y R+YP++ G SYLS+HLRFGTISIR L ++
Sbjct: 223 LAEIAMPTGASGAQALFEEFTGRMGDYGRRRDYPALRGPSYLSVHLRFGTISIRTLARVA 282
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
+ + + D G WLS+LIWRDFY MIL+ +P V +F YD I W+ + +
Sbjct: 283 HEAMLRG-GADSAGAAVWLSELIWRDFYFMILHHHPRVAAGAAFHPAYDAIRWQDGDTGE 341
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+ F W TGYPLID+A++Q+ SGYMHNRLRMVTASFL+K++G++W+ GE YFA++L
Sbjct: 342 RYFHAWRDAATGYPLIDAAMLQIRQSGYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQL 401
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD QG FIRKYLPQL+ L +KY+
Sbjct: 402 NDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQKFDPQGRFIRKYLPQLAALPDKYL 461
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
H+PW A L +AG+ LG NYP+P+++H ++++ L+RY +K ++ +
Sbjct: 462 HAPWTAPEAVLAEAGVRLGDNYPRPLVQHDVARQQTLRRYEAVKQVVKQE 511
>gi|207744141|ref|YP_002260533.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum IPO1609]
gi|206595545|emb|CAQ62472.1| putative deoxyribodipyrimidine photolyase, class 1 protein
[Ralstonia solanacearum IPO1609]
Length = 522
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 215/464 (46%), Positives = 309/464 (66%), Gaps = 10/464 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV+C F+FD+ ILDPL + G+ DRR+EFI ++ L L+ +LI+ + A I
Sbjct: 52 EVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAVEALRGALREAGGELIVLHDHAHHAIP 111
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L ++AV NHD EP A+ RD ++ L C + +KDQVIFE+ E+LN GKP
Sbjct: 112 SLAQQLGVEAVFANHDEEPAALARDAAVRDALARQPCAWLDFKDQVIFERAEVLNGQGKP 171
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y+ W+ V L++YP++ +L+ L ++ + + SL +GF +SN
Sbjct: 172 YGVFTPYKNAWLAAVSPFD--LRAYPIEPHLHAL---ARPPQGLAPATPSLEAMGFARSN 226
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS++ + TG SGA+ LL++F ++ +Y+ R+YP++ G SYLS HLRFGT+SIR L
Sbjct: 227 LSAIALPTGMSGAEALLDDFATRMDDYHARRDYPAVRGPSYLSTHLRFGTVSIRTLAAHA 286
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAK 300
+ + G TWLS+LIWRDFY MIL+ P++ SF+ E+D I W +
Sbjct: 287 HAAMLHGSR----GAATWLSELIWRDFYFMILHHRPDLAGGASFRPEFDRIRWVDGDAGD 342
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W TGYPL+D+A++Q+ SGYMHNRLRMV ASFLIK++G++W+ GE+YFA+ L
Sbjct: 343 VRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRMVAASFLIKDLGVDWRRGEHYFADAL 402
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFD A+NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD QG FIRKYLPQL+KL ++Y+
Sbjct: 403 NDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYL 462
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H+PW A + L+ AG+ LG+ YP+PI+EH+ ++ L+RY K
Sbjct: 463 HAPWTAPADVLKTAGVALGETYPRPIVEHAAARAATLERYAPAK 506
>gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 504
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 224/466 (48%), Positives = 315/466 (67%), Gaps = 13/466 (2%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V+CVFIFD +IL L Q DRRIEF+ S+ EL L LI+R+A A + I
Sbjct: 40 VFCVFIFDSDILQHLPEQ----DRRIEFLHASLTELHEELVKLGGALIVRHARAVEAIPA 95
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L+++AV INHDYEPQAI RD I L+ S KDQV+FE +E+L+ GKP+
Sbjct: 96 LARELDVEAVFINHDYEPQAIARDAAIATALQQHDIALHSSKDQVVFENDEVLSLAGKPF 155
Query: 123 SIFSFYQKKWIEKVK--SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
S+F+ Y+ W+++++ S+ ++++YPV+ + S H + +L +LGF +
Sbjct: 156 SVFTPYKNAWLKQLQFNSSDVHVRAYPVEPLADRFAVSPVAHVMP-----TLAELGFAPT 210
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
N + L I TG SG + L++NF+++I Y R++P+I G SYLS+HLRFGT+SIR L +
Sbjct: 211 NFAQLKIPTGMSGGQQLVDNFMERIDKYKQTRDFPAIKGPSYLSVHLRFGTVSIRHLARR 270
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + D G TWL++L+WRDFY MIL +P VV+ +FK +YD I WE+ A
Sbjct: 271 ACEAAR--IAADASGANTWLAELVWRDFYFMILQHHPRVVHGAFKPDYDAIQWETGPAAD 328
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F WC G TGYPL+D+A+ Q+N +GYMHNRLRMVTA FLIK++GI+W+ GE YFA KL
Sbjct: 329 ALFQAWCDGRTGYPLVDAAMAQINQTGYMHNRLRMVTACFLIKDLGIDWRRGEAYFAEKL 388
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
DFDL++NNG WQW++SSGC +QP+FRIFNPI QS+KFD G FIR+YLPQL++L NK I
Sbjct: 389 IDFDLSANNGGWQWASSSGCDAQPYFRIFNPITQSEKFDTDGRFIRRYLPQLAQLGNKQI 448
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
H+PW + +L+ AG+ LG NYP P+++H +++K L RY +K +
Sbjct: 449 HAPWLLTKMELDHAGVELGVNYPLPVVQHDVARKQTLARYAVVKKV 494
>gi|407710068|ref|YP_006793932.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
gi|407238751|gb|AFT88949.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
Length = 499
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 222/467 (47%), Positives = 313/467 (67%), Gaps = 16/467 (3%)
Query: 3 VYCVFIFDKNILDPL------RSQGI-IEDRRIEFIFKSIIELSINLQNYDSDLIIRYAI 55
V+CVF+FD IL PL R G +DRR+EFI S+ EL L+ L++ Y
Sbjct: 40 VWCVFVFDTTILQPLVDRWQTRHPGTQAQDRRVEFILGSLRELDEALRAQGGGLVVLYGD 99
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
+ + KL +L +DAV INHDYEP AI RD+ +++ L G F ++KDQVIFE+ E+L
Sbjct: 100 PADLVPKLADQLQVDAVFINHDYEPAAIERDEAVRERLAETGHAFRTFKDQVIFERAELL 159
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
KP+++F+ Y+ W++++ S L+ YPV++Y L + L +N + +L L
Sbjct: 160 TGQKKPFTVFTPYKNAWLKQLTSFD--LKPYPVETYATRL---ASLPPALNRQLPTLEQL 214
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF NL+ L + TG SGA+ LL++F+ +I +Y R++P++ G SYLS+HLRFGT+SIR
Sbjct: 215 GFAPGNLAELDLPTGMSGAQRLLDDFLTRIDSYAERRDFPAVKGPSYLSVHLRFGTVSIR 274
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWE 294
L +L + + D G TWLS+LIWRDFY MIL +P + SFK+EYD + WE
Sbjct: 275 TLARLAHEM---SLQPDGRGAATWLSELIWRDFYFMILAHHPRLAGGASFKEEYDRLRWE 331
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
A F WC+G TGYPLID+A++QLN +GYMHNRLRMVTASFL+K++G++W+ GE
Sbjct: 332 QGPEADAAFAAWCEGRTGYPLIDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGER 391
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YFA +LND+D A+NNG WQW+AS+GC +QP+FRIFNP QS+KFD G FI++YLPQL K
Sbjct: 392 YFAEQLNDYDFAANNGGWQWAASTGCDAQPYFRIFNPSTQSEKFDADGRFIKRYLPQLGK 451
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
L K+IH+PW A + +L + G+ LG NYP PI++H+ ++ L R+
Sbjct: 452 LPAKWIHAPWLAGAQRLAEFGVALGDNYPAPIVDHAHARARTLARFG 498
>gi|385206442|ref|ZP_10033312.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
gi|385186333|gb|EIF35607.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
Length = 499
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 217/467 (46%), Positives = 315/467 (67%), Gaps = 16/467 (3%)
Query: 3 VYCVFIFDKNILDPL-------RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAI 55
V+CVF+FD IL PL +DRRIEFI ++ EL L+ LI+ Y
Sbjct: 40 VWCVFVFDTTILQPLVDAWHARHPDTQPQDRRIEFILAALGELDEALRTDGGGLIVLYGN 99
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
+ + L +L DAV NHDYEP AI RD+ ++++L G ++ ++KDQVIFE++E+L
Sbjct: 100 PADLVPTLADELGADAVFANHDYEPVAIERDETVREQLAEAGRQWLTFKDQVIFERDEVL 159
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
KP+++F+ Y+ W+ ++ + L+ YPV++Y H + L ++ + +L L
Sbjct: 160 TGQSKPFTVFTPYRNAWLRQLSTFD--LKPYPVETYAK---HLAALPSRLDRQLPTLEQL 214
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF SNL L + TG SGA+ LL++F+ +I +Y R++P+ G SYLSIHLRFGT+SIR
Sbjct: 215 GFAPSNLGELSLPTGMSGAQRLLDDFMTRIDSYADRRDFPAAKGPSYLSIHLRFGTVSIR 274
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWE 294
L +L + + D G TWLS+LIWRDFY MIL +P + SFK+EYD + WE
Sbjct: 275 TLARLAHEL---SLQPDGQGSATWLSELIWRDFYFMILAHHPRLARGASFKEEYDRLRWE 331
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
A + F WC G TGYPL+D+A++QLN +GYMHNRLRMVTASFL+K++G++W+ GE
Sbjct: 332 QGPEADEAFAAWCDGRTGYPLVDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGER 391
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YFA +LNDFD ++NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD +G FI++YLPQL+K
Sbjct: 392 YFAEQLNDFDFSANNGGWQWAASTGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAK 451
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
L +K+IH+PW A + +L + G++LGK+YP PI++H+ ++ L R+
Sbjct: 452 LPSKWIHAPWLAGAERLAECGVVLGKDYPAPIVDHAEARARTLARFG 498
>gi|398812431|ref|ZP_10571188.1| deoxyribodipyrimidine photolyase [Variovorax sp. CF313]
gi|398077948|gb|EJL68890.1| deoxyribodipyrimidine photolyase [Variovorax sp. CF313]
Length = 500
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 221/463 (47%), Positives = 316/463 (68%), Gaps = 17/463 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V C F+FDK ILD L S DRR+EFI +S++EL L+ L++R+A A +EI
Sbjct: 40 QVVCAFVFDKAILDALPSV----DRRVEFIRESLVELEAELRTLGGGLVVRHAAAVQEIP 95
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L + AV N D EP A+ RD + L G F +YKD +F+++EIL +TG+P
Sbjct: 96 ALARELGVQAVFANRDDEPDALERDARVFGALANAGVAFHTYKDSTVFDRDEILTQTGQP 155
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y++F+ Y++ W+ KV S +L+ YPV+S+ + L S + + + +L ++GF KSN
Sbjct: 156 YTVFTPYKRAWLAKVDS--FFLKPYPVRSHADALAPSPQAY---GEPVPALREIGFEKSN 210
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS+L I TG GA +LL +F ++I Y R++P++ G SY+ +HLRFGT+SIR+L L
Sbjct: 211 LSALEIPTGTRGAGLLLEDFFERIDRYAEARDFPAVRGPSYMGVHLRFGTVSIRQLASLA 270
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV----VNKSFKKEYDNILWESDN 297
+ + G WLS+LIWR+FY IL +P+V +KSF+ EYD I W
Sbjct: 271 HQLSLQ----GNAGAAVWLSELIWREFYFQILAHFPHVHAGGESKSFRPEYDRIQWHHGK 326
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+A + F WC+G TGYPL+D+A++Q+N SGYMHNRLRMV ASFL K++G++W+ GE YFA
Sbjct: 327 HADQLFDAWCEGRTGYPLVDAAMLQINQSGYMHNRLRMVVASFLCKDLGLDWRRGEAYFA 386
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
LNDF+LASNNG WQW++SSGC +QP+FRIFNP+ QS++FD +G FIR+YLPQL+ LSN
Sbjct: 387 LHLNDFELASNNGGWQWASSSGCDAQPYFRIFNPVTQSERFDREGKFIRRYLPQLAGLSN 446
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
IH+PW AS +LE AGI LG+ YPKP+++H+ +++ L+RY
Sbjct: 447 AAIHAPWLASPVELEAAGITLGETYPKPVVDHAEAREKTLQRY 489
>gi|351729025|ref|ZP_08946716.1| deoxyribodipyrimidine photo-lyase [Acidovorax radicis N35]
Length = 496
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 220/468 (47%), Positives = 311/468 (66%), Gaps = 17/468 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ----NYDSDLIIRYAIAS 57
+V+C F+FD+ IL+ L DRR+EFI +S++EL L+ + LI+ +A+AS
Sbjct: 39 QVHCAFVFDREILNALPRT----DRRVEFIRESLVELDETLRMLSGHAQGGLIVLHAVAS 94
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
I L L + AV NHD EPQA+ RD ++ +L G F ++KD I E++E+L +
Sbjct: 95 DAIPALANALGVQAVFANHDDEPQALERDSQVRTQLATAGRAFHTFKDHTILERSEVLTQ 154
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
TG PYS+F+ Y+ W++KV + + L SYPV+ + + L + H+ + +L LGF
Sbjct: 155 TGNPYSVFTPYKNAWLKKVDAFQ--LTSYPVERHAHRLAPRPQEHR---QAVPTLASLGF 209
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ LS L + TGASGA+ L ++F+ +I+ Y RN+P++ G SYLS+HLRFGTIS R L
Sbjct: 210 EATALSQLKLPTGASGAQQLFDDFLGRIERYEDTRNFPAVKGPSYLSVHLRFGTISPRLL 269
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + + G TWLS+LIWRDFY IL+ +P+VV SFK YD I WES
Sbjct: 270 ARTAHGLMLQGNP----GATTWLSELIWRDFYFQILHHHPHVVGHSFKPAYDAIQWESGP 325
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV ASFL+K++GI+W+WGE YFA
Sbjct: 326 EADALFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASFLVKDLGIDWRWGEAYFA 385
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
LNDFDLA+NNG WQW++SSGC +QP+FRIFNP+ QS+KFD +G FIR+ LPQL+ L
Sbjct: 386 THLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEKFDPEGKFIRRCLPQLAGLPT 445
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
K +H+PW A +L+ AG+ LG YP P++EH ++ L+RY +K+
Sbjct: 446 KALHAPWLARPMELQGAGVRLGDTYPLPVVEHDTARHRTLERYAVVKS 493
>gi|187927713|ref|YP_001898200.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
Length = 518
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 218/464 (46%), Positives = 312/464 (67%), Gaps = 10/464 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EVYCVF+FD++ILD L ++G+ DRRIEFI SI EL L+ DL++ + I
Sbjct: 45 EVYCVFVFDRDILDALLARGLQADRRIEFIRASIEELRSALREAGGDLMVVHDHPRHAIP 104
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
++ KLNI+AV NHD EP A RD+ ++K L C +F +KDQVIFE++EILN G+P
Sbjct: 105 EIARKLNIEAVFANHDEEPSAQARDEAVRKVLAQQPCAWFDFKDQVIFERDEILNGQGRP 164
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y+ W+ + L++YP + YL L ++ + + + +L +GF +N
Sbjct: 165 YGVFTPYKNAWLAALTPFD--LRAYPTEPYLGAL---ARPPEALAHPTPALEAMGFAHTN 219
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS + + TG SG + LL+ F ++ +Y+ R++P++ G SYLS HLRFGT+SIR L
Sbjct: 220 LSEIALPTGMSGGQALLDEFEDRMDDYHARRDFPAVRGPSYLSTHLRFGTVSIRTLAARA 279
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAK 300
+ + + G TWLS+L+WRDFY MIL+ P++ + +F E+D I W +
Sbjct: 280 HAAMLRGSR----GAATWLSELVWRDFYFMILHHRPDLADGAAFHPEFDRIRWVDGDTGD 335
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W TGYPL+D+A++Q+ SGYMHNRLRMV ASFLIK++GI+W+ GE YFA+ L
Sbjct: 336 ARFEAWKGAQTGYPLVDAAMLQIFQSGYMHNRLRMVAASFLIKDLGIDWRRGEQYFADVL 395
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFD ++NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD QG FIRKYLPQL+KL +KYI
Sbjct: 396 NDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQSEKFDPQGRFIRKYLPQLAKLPDKYI 455
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H+PW A + L++AG++LG+ YP+PI++H+ ++ L RY K
Sbjct: 456 HAPWTAPANVLKEAGVVLGETYPRPIIDHAGARAATLDRYAVTK 499
>gi|319795849|ref|YP_004157489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS]
gi|315598312|gb|ADU39378.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS]
Length = 499
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 221/467 (47%), Positives = 318/467 (68%), Gaps = 17/467 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V CVF+FDK ILDPL S DRR+EFI +S++EL L LI+R++ A +EI
Sbjct: 40 QVVCVFVFDKAILDPLPSA----DRRVEFIRESLLELQAELGALSGGLIVRHSHAVQEIP 95
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L L + AV N D EP A+ RD + L G F +YKD +F+++E+L KTG+P
Sbjct: 96 ALASDLGVQAVFANRDDEPDALERDAKVLGALANAGIAFHTYKDSTVFDRDEVLTKTGQP 155
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y++F+ Y++ W+ KV S +L+ YPV+ + + LV + ++ + SL +LGF K+N
Sbjct: 156 YTVFTPYKRAWLAKVDS--FFLKPYPVRGHADALVPPPQAYR---EPMPSLGELGFEKTN 210
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS+L I TG+ GA +L +F ++I Y+ RN+P++ G SY+ +HLRFGT+SIR++ +
Sbjct: 211 LSALEIPTGSLGAGVLFEDFFERIDRYDEARNFPAVRGPSYMGVHLRFGTVSIRQVASVA 270
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV----VNKSFKKEYDNILWESDN 297
+ + G TWLS+LIWRDFY IL +P+V +KSF+ EYD I W
Sbjct: 271 HQLSLQ----GNAGAATWLSELIWRDFYFQILTHFPHVHKDGESKSFRPEYDKIQWHHGK 326
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+A + WC+G TGYPL+D+A++Q+N SGYMHNRLRMV ASFL K++G++W+ GE YFA
Sbjct: 327 HADQLLDAWCEGRTGYPLVDAAMLQINQSGYMHNRLRMVVASFLCKDLGLDWRRGERYFA 386
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
LNDF+LASNNG WQW++SSGC +QP+FRIFNP+ QS++FD +G FIR+YLPQL++LSN
Sbjct: 387 LHLNDFELASNNGGWQWASSSGCDAQPYFRIFNPVTQSERFDPEGKFIRRYLPQLARLSN 446
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
IH+PW AS +LE AGI LG+ YP P+++H+ +++ L+RY +
Sbjct: 447 AAIHAPWTASPVELEAAGIKLGETYPLPVVDHAEAREKTLQRYGVAR 493
>gi|395763919|ref|ZP_10444588.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium lividum PAMC
25724]
Length = 487
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 218/464 (46%), Positives = 308/464 (66%), Gaps = 9/464 (1%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V+CVF++D IL L + DRR++F+ S+ EL+ L+ DLI+ +A A++ I +
Sbjct: 32 VHCVFVYDTAILAALPRR----DRRVDFLHASLAELAAELRQLGGDLIVLHADAAEAIPR 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +LN DAV NHDYEPQAI RD + L + S+KDQVIFEK+E+L + KPY
Sbjct: 88 LAAELNADAVFANHDYEPQAIARDARVAAALTQEARLWCSFKDQVIFEKDEVLTLSAKPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y+ W++K+++ L + + +L + + SL +LGF SNL
Sbjct: 148 TVYTPYKNAWLKKMRAEPGCLAPLDIAPHAASL---APPRDGTPAPLPSLGELGFEASNL 204
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ L I TG SGA L +F+ ++ Y++ R++P++ G SYLS+HLRFGT+S+R LV+ +
Sbjct: 205 AELAIPTGMSGASELFEDFLARVARYDVARDFPALKGPSYLSMHLRFGTVSLRYLVRSVV 264
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + D G WL++LIWRDFY MILY P+V +FK YD I WE+ A
Sbjct: 265 DLMDRGSGGD--GAPVWLAELIWRDFYAMILYQNPHVAGAAFKPAYDAIAWETGLEADAA 322
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYPL+D+A+ QLN +GYMHNRLRMVTA FLIK++GI+W+ GE YFA LND
Sbjct: 323 FAAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRMVTACFLIKDLGIDWRRGEAYFALHLND 382
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
FDLASNNG WQW++SSGC SQP+FRIFNP+ QS+KFD G FIR+YLPQL L +K IH+
Sbjct: 383 FDLASNNGGWQWASSSGCDSQPYFRIFNPVTQSEKFDANGRFIRRYLPQLKALGDKEIHA 442
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
PW LE+ I+LG++YP+P+++H ++K L RY +K +
Sbjct: 443 PWLVPRMLLEQKNIVLGRDYPEPLVQHDEARKETLARYAVVKVV 486
>gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
Length = 499
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 216/467 (46%), Positives = 314/467 (67%), Gaps = 16/467 (3%)
Query: 3 VYCVFIFDKNILDPL------RSQGI-IEDRRIEFIFKSIIELSINLQNYDSDLIIRYAI 55
V+CVF+FD IL PL R G +DRR+EFI S+ EL L+ L++ Y
Sbjct: 40 VWCVFVFDTTILQPLIDKWQSRHPGTQAQDRRVEFILASLHELDEALRARGGGLVVLYGD 99
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
+ KL +L +DAV NHDYEP AI RD+ +++ L G ++KDQVIFE+ E+L
Sbjct: 100 PVDLVPKLAAELEVDAVFANHDYEPAAIERDEAVRERLSDAGRALQTFKDQVIFERAELL 159
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
KP+++F+ Y+ W++++ S L+ +PV++Y N L + L +N + +L L
Sbjct: 160 TGQNKPFTVFTPYKNAWLKQLTSFD--LKPFPVETYANRL---APLPPRLNRQLPTLEQL 214
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF NL L + TG SGA+ LL++F+ +I +Y R++P+ G SYLS+HLRFGT+SIR
Sbjct: 215 GFAPGNLGELELPTGMSGAQRLLDDFLSRIDSYAERRDFPAAKGPSYLSVHLRFGTVSIR 274
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWE 294
L +L + + D G TWLS+L+WRDFY MIL +P + SF+ +YD + WE
Sbjct: 275 TLARLAHEM---SLQPDGRGAATWLSELVWRDFYFMILAHHPRLAAGASFRADYDRLRWE 331
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
A+ F WC+G TGYPLID+A++QLN +GYMHNRLRMVTASFL+K++G++W+ GE
Sbjct: 332 QGPEAEAAFAAWCEGRTGYPLIDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGER 391
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YFA +LND+D A+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD +G FI++YLPQL+K
Sbjct: 392 YFAEQLNDYDFAANNGGWQWAASTGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAK 451
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
L K+IH+PW A + +L + G++LG++YP PI++H+ ++ L R+
Sbjct: 452 LPAKWIHAPWLAGAQRLAEYGVMLGEDYPAPIVDHAQARARTLARFG 498
>gi|120609600|ref|YP_969278.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
AAC00-1]
gi|120588064|gb|ABM31504.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
AAC00-1]
Length = 493
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 208/469 (44%), Positives = 314/469 (66%), Gaps = 18/469 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ----NYDSDLIIRYAIAS 57
+V+CVF+FD ILDPL DRR+EFI +S+++L +L+ + LI+R+ +A+
Sbjct: 33 QVHCVFVFDTAILDPLPRA----DRRVEFIRESLVQLDASLRALSGHRHGGLIVRHGVAA 88
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
+E+ L +L + AV NHD EP A+ RD +++ L G + +YKD IFE+ E+L +
Sbjct: 89 EEVPALAARLGVQAVFANHDDEPVALERDDRVRRRLGTGGVQMLTYKDHAIFERAEVLTQ 148
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
G PY++F+ Y+ W+ KV + YL +YPV+ + L + + + +L D+GF
Sbjct: 149 GGTPYTVFTPYKNAWLRKV--DAFYLSAYPVERHAGRLAPRPEGER---GGVPALADIGF 203
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ L L + G GA+ LL++F+++I Y R++P++ G SYLS+HLRFGT+S R+
Sbjct: 204 EPAGLDRLPLPPGMDGARALLDDFLQRIDQYGEARDFPAVKGPSYLSVHLRFGTLSPRRA 263
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESD 296
+ + +++ G TWL++LIWRDFY +L +P V SFK YD I WE
Sbjct: 264 ARAAHERMRQ----GSTGAATWLNELIWRDFYFQVLAHHPQVAGGASFKPAYDAIAWEDG 319
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
A++ F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV ASFL+K++G++W+WGE YF
Sbjct: 320 PQARERFAAWCEGRTGYPLVDAAMAQINRTGYMHNRLRMVVASFLVKDLGVDWRWGERYF 379
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
A KLNDFDL++NNG WQW++SSGC +QP+FRIFNP+ QS+KFD +G FIR YLPQL+ L
Sbjct: 380 AEKLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVSQSRKFDPKGRFIRLYLPQLAALP 439
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
++++H+PW+A +LE AG+ LG NYP P+++H +++ L RY +K+
Sbjct: 440 DRWLHAPWEAGPLELEAAGVRLGDNYPHPVVDHDEARQRTLARYAVVKS 488
>gi|187921432|ref|YP_001890464.1| deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
Length = 499
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 220/468 (47%), Positives = 318/468 (67%), Gaps = 18/468 (3%)
Query: 3 VYCVFIFDKNILDPL-------RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAI 55
V+CVF+FD IL PL +DRRIE I ++ EL L+ LI+ Y
Sbjct: 40 VWCVFVFDTTILQPLVEAWQARHPDTQPQDRRIELILGALGELDEALRANGGGLIVLYGD 99
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
+ + KL +L +DAV NHDYEP AI RD+ +++ L G ++ ++KDQVIFE++E+L
Sbjct: 100 PADLVPKLADELGVDAVFANHDYEPVAIARDETVRETLAEAGRQWLTFKDQVIFERDEVL 159
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHS-SKLHKIINNNIISLND 174
KP+++F+ Y+ W++++ + L+ YPV+SY +L SKL + + +L+
Sbjct: 160 TGQNKPFTVFTPYKNAWLKQLTAFD--LKPYPVESYTKHLAAPPSKL----DRRLPTLDQ 213
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
LGF SNL+ L + G SGA+ LL++F +I +Y R++P+ G SYLSIHLRFGT+SI
Sbjct: 214 LGFAPSNLAELDLPAGMSGAQRLLDDFATRIDSYKDRRDFPAAKGPSYLSIHLRFGTVSI 273
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILW 293
R L +L + + D G TWLS+LIWRDFY MIL +P + N SFK+EYD + W
Sbjct: 274 RTLARLAHEM---SLQPDGEGSTTWLSELIWRDFYFMILAHHPRLANGASFKEEYDQLRW 330
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
E A + F WC G TGYPL+D+A++QLN +GYMHNRLRMVTASFL+K++G++W+ GE
Sbjct: 331 EQGPEADEAFAAWCDGRTGYPLVDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGE 390
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YFA +LNDFD ++NNG WQW+AS+GC +QP+FRIFNPI QS+KFD +G FI++YLPQL+
Sbjct: 391 RYFAQQLNDFDFSANNGGWQWAASTGCDAQPYFRIFNPITQSEKFDAEGRFIKRYLPQLA 450
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+L +K+IH+PW A + +L + G++LGK+YP PI++H+ ++ L R+
Sbjct: 451 RLPSKWIHAPWLAGTERLAEFGVVLGKDYPAPIVDHAEARARTLARFG 498
>gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
Length = 518
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 215/464 (46%), Positives = 310/464 (66%), Gaps = 10/464 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EVYCVF+FD++ILD L ++G+ DRR+EFI SI EL L+ DLI+ + I
Sbjct: 45 EVYCVFVFDRDILDALLARGLKADRRVEFIRASIEELRGALREAGGDLIVVHDHPRHAIP 104
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
++ +LN++AV NHD EP A RD+ ++K L C +F +KDQVIFE++EILN GKP
Sbjct: 105 EIARQLNVEAVFANHDEEPSAQARDEAVRKALAQQPCAWFDFKDQVIFERDEILNGQGKP 164
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y+ W+ + L++YP + Y L ++ + + +L +GF ++N
Sbjct: 165 YGVFTPYKNAWLAAL--TPLDLRAYPTEPYFGAL---ARPPEALAQPTPALEAMGFARTN 219
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS + + +G SG + LL+ F +++ +Y+ R++P++ G SYLS HLRFGT+SIR L
Sbjct: 220 LSEIALPSGMSGGQTLLDEFEERMDDYHARRDFPAVRGPSYLSTHLRFGTVSIRTLAARA 279
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAK 300
+ + + G TWLS+L+WRDFY MIL+ P++ + +F E+D I W +
Sbjct: 280 HAAMLRGSR----GAATWLSELVWRDFYFMILHHRPDLADGAAFHPEFDRIRWVDGDTGD 335
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W TGYPL+D+A++Q+ SGYMHNRLRMV ASFLIK++GI+W+ GE YFA+ L
Sbjct: 336 ARFEAWKAARTGYPLVDAAMLQIFQSGYMHNRLRMVAASFLIKDLGIDWRRGEQYFADVL 395
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFD A+NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD QG FIRKYLPQL+KL +KYI
Sbjct: 396 NDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQSEKFDPQGRFIRKYLPQLAKLPDKYI 455
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H+PW A + L++A ++LG+ YP PI++H+ ++ L RY K
Sbjct: 456 HAPWTAPANVLKEASVVLGETYPLPIVDHAAARAATLDRYAVTK 499
>gi|421889155|ref|ZP_16320215.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum K60-1]
gi|378965575|emb|CCF96963.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum K60-1]
Length = 522
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 212/449 (47%), Positives = 300/449 (66%), Gaps = 10/449 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV+C F+FD+ ILDPL ++G+ DRR+EFI ++ L L+ +LI+ + A I
Sbjct: 52 EVFCAFVFDRGILDPLLARGLRADRRVEFIRAAVEALRGALREAGGELIVLHDHAHHAIP 111
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L ++AV NHD EP A+ RD ++ L C +F +KDQVIFE+ E+LN GKP
Sbjct: 112 SLAQQLGVEAVFANHDEEPAALARDAAVRDALARQPCAWFDFKDQVIFERAEVLNGQGKP 171
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y+ W+ V L++YP++ +L+ L + + SL +GF +SN
Sbjct: 172 YGVFTPYKNAWLAAVSPFD--LRAYPIEPHLHALARPPQR---LAPATPSLEAIGFARSN 226
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS++ + TG SGA+ LL++F ++ +Y+ R+YP++ G SYLS HLRFGT+SIR L
Sbjct: 227 LSAIALPTGMSGAEALLDDFATRMDDYHARRDYPAVRGPSYLSTHLRFGTVSIRTLAARA 286
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
+ + G TWLS+LIWRDFY MIL+ P++ SF+ E+D I W S
Sbjct: 287 HSAMLHGSR----GAATWLSELIWRDFYFMILHHRPDLAEGASFRPEFDRIRWVSGETGD 342
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W TGYPL+D+A++Q+ SGYMHNRLRMV ASFLIK++G++W+ GE+YFA+ L
Sbjct: 343 VRFAAWRDARTGYPLVDAAMLQIGQSGYMHNRLRMVAASFLIKDLGVDWRRGEHYFADAL 402
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFD A+NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD QG FIRKYLPQL+KL ++Y+
Sbjct: 403 NDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYL 462
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEH 449
H+PW A + L+ AG+ LG YP+PI++H
Sbjct: 463 HAPWTAPADVLKAAGVALGATYPRPIVDH 491
>gi|390569912|ref|ZP_10250187.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|420254982|ref|ZP_14757945.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
gi|389938145|gb|EIM99998.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|398047192|gb|EJL39755.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
Length = 504
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 214/472 (45%), Positives = 321/472 (68%), Gaps = 17/472 (3%)
Query: 3 VYCVFIFDKNILDPL--------RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYA 54
V+CVF+FD IL PL +G ++DRRIEFI S+ EL +L+ LI+ +
Sbjct: 40 VWCVFVFDTTILQPLIDWANEHDDHKGKVQDRRIEFILASLEELDRSLKEGGGGLIVLHG 99
Query: 55 IASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEI 114
+EI +L +L +AV NHDYEP AI RD+ + + L+ G + ++KDQVIFE+ E+
Sbjct: 100 DPHEEIPRLAAQLEAEAVFTNHDYEPVAIERDESVAERLRDDGRQLLTFKDQVIFEREEL 159
Query: 115 LNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLND 174
LN GKP+++F+ Y+ W++K+ L+ YPV+ Y +L + +++ +L
Sbjct: 160 LNGQGKPFAVFTPYKNAWLKKL--TPFDLKPYPVERYAKSLARPPR---KLDHAWPTLGQ 214
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
+GF L+ + TG SGA+ LL +F+ +I +Y R++P+ GTS+LS+HLRFGT+SI
Sbjct: 215 MGFAPGKLAETKLLTGMSGAQTLLEDFVTRIDSYADRRDFPAARGTSHLSVHLRFGTVSI 274
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILW 293
R L +L + + D G TWLS+LIWRDFY MIL +P++ + SFK E+D + W
Sbjct: 275 RTLARLAHEM---SLQPDGQGAATWLSELIWRDFYFMILAHHPHIAKRASFKPEFDTLRW 331
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
E+ A F WCKG TGYPL+D+A++QLN +G+MHNRLRMVTASFL K++GI+W+ GE
Sbjct: 332 ETGKQADALFAAWCKGRTGYPLVDAAMLQLNQTGFMHNRLRMVTASFLAKDLGIDWRRGE 391
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YF KLNDFD ++NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD QG+FI+++LP+L
Sbjct: 392 RYFEEKLNDFDFSANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPQGLFIKRFLPELE 451
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
K+ K+IH+PW+A+ L+ G++LGK+YP+P+++H+ +++ L RY +++
Sbjct: 452 KVPAKWIHAPWQANPDDLKDWGVVLGKDYPQPVVDHAKARQETLARYGMLRS 503
>gi|121606238|ref|YP_983567.1| deoxyribodipyrimidine photo-lyase [Polaromonas naphthalenivorans
CJ2]
gi|120595207|gb|ABM38646.1| deoxyribodipyrimidine photo-lyase type I [Polaromonas
naphthalenivorans CJ2]
Length = 477
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 218/465 (46%), Positives = 311/465 (66%), Gaps = 15/465 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNY--DSDLIIRYAIASKE 59
+V+C F+FD+ ILD L DRR+EFI +S+++L+ L + L+IR+ A
Sbjct: 24 QVFCAFVFDRAILDSLPKA----DRRVEFIRESLVDLNRQLAKLALPAGLLIRHGTALDA 79
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
+ L +L++DAV NHD EP ++ RD ++ L+ G F ++KD VIFE+ E+L G
Sbjct: 80 LPALASRLSVDAVFANHDDEPCSLARDAEVQGLLECAGVAFHTFKDHVIFERQEVLTLAG 139
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
+PY++F+ Y+K W++KV + YLQ YPV+ Y + L + ++ +L +LGF K
Sbjct: 140 QPYTVFTPYKKAWLKKV--DAFYLQPYPVEKYASALAARPADER---QDVPALAELGFEK 194
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
+NLS+L + TG+ GA+ L ++F+ ++ +Y R++P++ G SYL +HLRFGTISIRK+
Sbjct: 195 TNLSALRLPTGSQGAEALFDDFLDRMPHYADTRDFPAVKGPSYLGVHLRFGTISIRKITL 254
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+T G TWLS+LIWRDFY IL +P+ + +FK YD I WE A
Sbjct: 255 NALA----QQQTGSEGAATWLSELIWRDFYAQILANFPHAASSAFKPGYDAIAWEQGEKA 310
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ F WC+G TGYPL+D+A+ QLN +GYMHNRLRMVTASFL+K++GI+W+WGE YFA K
Sbjct: 311 ELLFQAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRMVTASFLVKDLGIDWRWGERYFAEK 370
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
LNDFDLASNNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FIRKYLP L+KL
Sbjct: 371 LNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDADGKFIRKYLPVLAKLPKAA 430
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+HSPW AS + A + LG NY +P++ H+ ++ L+RY +K
Sbjct: 431 LHSPWLASPMERAAASVALGSNYARPVVAHAEARALTLQRYALVK 475
>gi|300704913|ref|YP_003746516.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum CFBP2957]
gi|299072577|emb|CBJ43927.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum CFBP2957]
Length = 522
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 212/449 (47%), Positives = 301/449 (67%), Gaps = 10/449 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV+C F+FD+ ILDPL ++G+ DRR+EFI ++ L L+ +LI+ + A I
Sbjct: 52 EVFCAFVFDRGILDPLLARGLRADRRVEFIRAAVEALRSALREAGGELIVLHDHAHHAIP 111
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L ++AV NHD EP A+ RD ++ L C +F +KDQVIFE+ E+LN GKP
Sbjct: 112 SLAQQLGVEAVFANHDEEPAALARDAAVRDALARQPCAWFDFKDQVIFERAEVLNGQGKP 171
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y+ W+ V L++YP++ +L+ L ++ + + SL +GF +SN
Sbjct: 172 YGVFTPYKNAWLAAVSPFD--LRAYPIEPHLHAL---ARPPQGLAPATPSLEAMGFARSN 226
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS + + TG SGA+ LL++F ++ +Y+ R+YP++ G SYLS HLRFGT+SIR L
Sbjct: 227 LSVIALPTGMSGAEALLDDFATRMDDYHARRDYPAVRGPSYLSTHLRFGTVSIRTLAARA 286
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
+ + G TWLS+LIWRDFY MIL+ P++ SF+ E+D I W
Sbjct: 287 HSAMLHGSR----GAATWLSELIWRDFYFMILHHRPDLAEGTSFRPEFDRIRWVGGETGD 342
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W TGYPL+D+A++Q+ SGYMHNRLRMVTASFLIK++G++W+ GE++FA+ L
Sbjct: 343 VRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRMVTASFLIKDLGVDWRRGEHHFADAL 402
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFD A+NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD QG FIRKYLPQL+KL ++Y+
Sbjct: 403 NDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYL 462
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEH 449
H+PW A + L+ AG+ LG YP+PI+EH
Sbjct: 463 HAPWTAPADVLKAAGVALGATYPRPIVEH 491
>gi|309780777|ref|ZP_07675518.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Ralstonia sp.
5_7_47FAA]
gi|404394317|ref|ZP_10986121.1| hypothetical protein HMPREF0989_03412 [Ralstonia sp. 5_2_56FAA]
gi|308920459|gb|EFP66115.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Ralstonia sp.
5_7_47FAA]
gi|348613327|gb|EGY62917.1| hypothetical protein HMPREF0989_03412 [Ralstonia sp. 5_2_56FAA]
Length = 518
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 215/464 (46%), Positives = 311/464 (67%), Gaps = 10/464 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EVYCVF+FD++ILD L ++G+ DRR+EFI SI EL L+ DLI+ + I
Sbjct: 45 EVYCVFVFDRDILDALLARGLKSDRRVEFIRASIEELRGALRETGGDLIVVHDHPRHAIP 104
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
++ +LN++AV NHD EP A RD+ ++K L C +F +KDQVIFE++EILN GKP
Sbjct: 105 EIARQLNVEAVFANHDEEPSAQARDEAVRKALAQQPCAWFDFKDQVIFERDEILNGQGKP 164
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y+ W+ + L++YP + Y L +K + + + +L +GF ++N
Sbjct: 165 YGVFTPYKNAWLAALTPFD--LRAYPTEPYFGAL---AKPPEALAHPTPALEAMGFARTN 219
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS + + +G SG + LL+ F +++ +Y+ R++P++ G SYLS HLRFGT+SIR L
Sbjct: 220 LSEIALPSGMSGGQTLLDEFEERMDDYHARRDFPAVRGPSYLSTHLRFGTVSIRTLAARA 279
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAK 300
+ + + G TWLS+L+WRDFY MIL+ P++ + +F E+D I W +
Sbjct: 280 HASMLRGSR----GAATWLSELVWRDFYFMILHHRPDLADGAAFHPEFDRIRWVDGDTGD 335
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W TGYPL+D+A++Q+ SGYMHNRLRMV ASFLIK++GI+W+ GE YFA+ L
Sbjct: 336 ARFEAWKAARTGYPLVDAAMLQIFQSGYMHNRLRMVAASFLIKDLGIDWRRGEQYFADVL 395
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFD ++NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD QG FIRKYLPQL+KL +KYI
Sbjct: 396 NDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQSEKFDPQGRFIRKYLPQLAKLPDKYI 455
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H+PW A + L++A ++LG+ YP PI++H+ ++ L RY K
Sbjct: 456 HAPWTAPANVLKEASVVLGETYPLPIVDHAAARAATLDRYAVTK 499
>gi|239817579|ref|YP_002946489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110]
gi|239804156|gb|ACS21223.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110]
Length = 515
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 224/468 (47%), Positives = 319/468 (68%), Gaps = 17/468 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V CVF+FD+ ILDPL DRR+EFI +S++EL L+ LI+R+A A +EI
Sbjct: 40 QVVCVFVFDRAILDPLPRI----DRRVEFIRESLVELEEELRALSGGLIVRHAHAIEEIP 95
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L L++ AV N D EP A+ RD + L G F++YKD +FE++E+LNKTG+P
Sbjct: 96 ALAHSLDVQAVFANRDDEPDALARDAQVLGALANAGVSFYTYKDSTVFERDELLNKTGQP 155
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y++F+ Y++ W+ KV + +L+ YPV+S+ + L H+ SL DLGF +SN
Sbjct: 156 YTVFTPYKRAWLAKV--DAFFLKPYPVRSHADALAPPPAAHR---TPAPSLEDLGFGRSN 210
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LS LGI TG+ GA L +F ++I Y+ RN+P++ G SYL +HLRFGT+SIR+L +
Sbjct: 211 LSELGIPTGSQGAAALFEDFFQRIDRYDAARNFPAVRGPSYLGVHLRFGTVSIRQLAGVA 270
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV----VNKSFKKEYDNILWESDN 297
+ + G WL +LIWR+FY IL +P+V +KSF+ EYD I W
Sbjct: 271 HQL----FLQGDAGAAAWLGELIWREFYFQILVHFPHVHSGGESKSFRPEYDKIQWHHGK 326
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+A + F WC+G TGYPL+D+A++Q+N SGYMHNRLRMV ASFL K++G++W+ GE YFA
Sbjct: 327 HADQLFEAWCQGRTGYPLVDAAMLQINQSGYMHNRLRMVVASFLCKDLGLDWRRGERYFA 386
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
LNDF+LASNNGNWQW++SSGC +QP+FRIFNP+ QS++FD +G FIR+YLPQL+ LSN
Sbjct: 387 LHLNDFELASNNGNWQWASSSGCDAQPWFRIFNPVTQSERFDPEGKFIRRYLPQLAGLSN 446
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH+PW AS +LE AGI LG+ YP+P+++H+ +++ ++RY ++
Sbjct: 447 AAIHAPWTASPVELEAAGIKLGETYPRPVVDHAEAREQTMRRYAAVRG 494
>gi|339327951|ref|YP_004687643.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
gi|338170552|gb|AEI81605.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
Length = 511
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 217/464 (46%), Positives = 312/464 (67%), Gaps = 7/464 (1%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V+CVF+FD+ ILDPL ++G DRR+EFI +S+ L L + LI+ A I
Sbjct: 53 QVWCVFVFDREILDPLIARGRKVDRRVEFILRSLEPLRRTLTDAGGGLIVLDDTARDAIP 112
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L +L+ +AV NHDYEP A RD + + L F++KDQVIFE ++++ G+P
Sbjct: 113 RLAAELDAEAVFTNHDYEPAAKRRDTAVSQALASDFRVLFTFKDQVIFEADDLMTGQGQP 172
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+S+F+ Y+ W+ V+ L+ YPV YL L + ++ ++ L+DLGF SN
Sbjct: 173 FSVFTPYKNAWLRGVQPFD--LRPYPVDKYLGALAPVPRQYQKVSP---MLDDLGFAVSN 227
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L + + TG+ GA+ L + FI +I +Y R++PS+ G SYLS+HLRFGTISIR L +
Sbjct: 228 LVEIAMPTGSDGARALFDEFIDRIGDYGNRRDFPSLRGPSYLSVHLRFGTISIRTLARAA 287
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAK 300
+ + + G WLS+LIWRDFY MIL+ +P V + KSF+ EYD + W
Sbjct: 288 LDAVLRG-GSKSAGAAVWLSELIWRDFYFMILHHHPRVADGKSFRPEYDALRWVDSVTGD 346
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+ F WC TGYPL+D+A++Q++ SGYMHNRLRMVTASFL+K++G++W+ GE YFA++L
Sbjct: 347 RYFQAWCDAQTGYPLVDAAMLQIHQSGYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQL 406
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFD ++NNG WQW+AS+GC +QP+FRIFNP++QS+KFD QG FIRKYLP L+++ +KYI
Sbjct: 407 NDFDFSANNGGWQWAASTGCDAQPYFRIFNPVMQSEKFDPQGRFIRKYLPVLAQMPDKYI 466
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H+PW A L AG+ LG+NYP PI++H +++K L+RY IK
Sbjct: 467 HAPWTAPVNVLATAGVKLGENYPPPIVQHDVARKETLERYAAIK 510
>gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
Length = 499
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 216/467 (46%), Positives = 313/467 (67%), Gaps = 16/467 (3%)
Query: 3 VYCVFIFDKNILDPL-------RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAI 55
V+CVF+FD IL PL +DRRIEFI ++ EL L+ LI+ Y
Sbjct: 40 VWCVFVFDTTILQPLVDAWHARHPDTQPQDRRIEFILAALGELDEALRADGGGLIVLYGN 99
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
++ + KL +L +DAV NHDYEP AI RD +++ L G ++ ++KDQVIFE++E+L
Sbjct: 100 PAELVPKLADELGVDAVFANHDYEPVAIERDGTVRERLAEAGRQWLTFKDQVIFERDEVL 159
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
KP+++F+ Y+ W+ ++ + L+ YPV++Y L + L + + +L L
Sbjct: 160 TGQSKPFTVFTPYRNAWLRQLSAFD--LKPYPVETYAKRL---AALPSKFDRQLPTLEQL 214
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF SNL L + G SGA+ LL++F+ +I +Y R++P+ G SYLSIHLRFGT+SIR
Sbjct: 215 GFAPSNLGELNLPAGMSGAQRLLDDFMTRIDSYADRRDFPAAKGPSYLSIHLRFGTVSIR 274
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWE 294
L +L + + D G TWLS+LIWRDFY MIL +P + SF++EYD + WE
Sbjct: 275 TLARLAHEM---SLQPDGQGSATWLSELIWRDFYFMILAHHPRLARGASFREEYDRLRWE 331
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
A + F WC G TGYPL+D+A++QLN +GYMHNRLRMVTASFL+K++G++W+ GE
Sbjct: 332 QGLQADEAFAAWCNGRTGYPLVDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGER 391
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YFA +LNDFD ++NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD +G FI++YLPQL+K
Sbjct: 392 YFAEQLNDFDFSANNGGWQWAASTGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAK 451
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
L +K+IH+PW A + +L G++LGK+YP PI++H+ ++ L R+
Sbjct: 452 LPSKWIHAPWLAGAERLADCGVVLGKDYPAPIVDHAEARARTLARFG 498
>gi|358638826|dbj|BAL26123.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. KH32C]
Length = 480
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 210/470 (44%), Positives = 311/470 (66%), Gaps = 27/470 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-------NYDSDLIIRYAI 55
V+CVF+FD+ ILD L + EDRRIEFI++SI EL L + LI+R+A
Sbjct: 31 VHCVFVFDREILDALPRR---EDRRIEFIWRSIRELDAELDRLSRQAGGAGAGLIVRHAR 87
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
A + + +L +L + AV N DYEP AI RD+ + + L G F ++DQVIFE++E+L
Sbjct: 88 ADEAVPQLASELGVAAVFANRDYEPAAIARDRRVAQRLVEAGIAFEDFRDQVIFERDELL 147
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+ G PYS+F+ Y+ W+ + S + ++++P+ L K I L ++
Sbjct: 148 TQAGAPYSVFTPYKNAWLARFDSAR--MEAFPIAEAAAGLAP-----KADGERIPELAEI 200
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF +NL L + G SG + LL +F+++I +Y R+YPS G SYLS HLRFGT+SIR
Sbjct: 201 GFLPTNLGQLRLPAGMSGGRALLGDFVRRIGDYAEARDYPSRKGVSYLSTHLRFGTLSIR 260
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+L L + G TWLS+LIWR+FYQMILY +P VV+ F+ EYD I+W+
Sbjct: 261 ELASLA-------WTEGSAGAQTWLSELIWREFYQMILYHHPRVVDACFRPEYDRIVWDD 313
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
A + F WC+G TGYPL+D+A+ QLN +GYMHNRLRMV ASFL K++GI+W+ GE Y
Sbjct: 314 ---APELFAAWCEGRTGYPLVDAAMRQLNGTGYMHNRLRMVAASFLTKDLGIDWRRGERY 370
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA +LND+DLA+NNG WQW+AS+GC +QP+FRIFNP+ QS++FD G FIR+Y+P+L+++
Sbjct: 371 FAAQLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPVTQSERFDPDGAFIRRYVPELARV 430
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+++YIH+PWK + G+ +G++YP P+++H+ +++ L+R+ ++
Sbjct: 431 ASRYIHAPWKMPEAEQAACGVRIGRDYPAPVVDHAQARERTLQRFAVVRG 480
>gi|171060633|ref|YP_001792982.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
gi|170778078|gb|ACB36217.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
Length = 511
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 215/468 (45%), Positives = 315/468 (67%), Gaps = 14/468 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V+C FIFD ILD L DRR+EFI I+EL L+ + S LI+R+ +EI
Sbjct: 58 KVWCAFIFDTTILDALPRA----DRRVEFIHHGIVELDGLLRAHGSGLIVRHGDPLQEIP 113
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+ L + AV IN DYEP A+ RD ++ L G S+KDQVIFE +EIL G P
Sbjct: 114 AIAGALGVQAVHINRDYEPAAVARDAQVRGALAHAGIALHSHKDQVIFETDEILTMAGSP 173
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+S+F+ Y+ W++K+ + YL++YPV+ ++ L + + ++ + +LNDL F ++
Sbjct: 174 FSVFTPYKNAWLKKL--DGYYLRAYPVQRHIGAL---APVPAALDRGVPTLNDLDFLPTD 228
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+++ + GASG LL +F+++I Y R++P+I G SYLS+HLRFGT+SIR+L +L
Sbjct: 229 MAAR-LHPGASGGATLLLDFLERIDRYADTRDFPAIKGPSYLSVHLRFGTVSIRQLARLA 287
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + + G WLS+LIWRDFY IL+ +P VV +K EY+ + WE +A++
Sbjct: 288 HERMVGGSR----GAEVWLSELIWRDFYHQILHHHPRVVTHCYKPEYEALRWEHGKHAEQ 343
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYP+ID+A++QLN +GYMHNRLRMV ASFL K++GI+W+ GE YFA +LN
Sbjct: 344 LFAAWCEGRTGYPIIDAAMLQLNRTGYMHNRLRMVVASFLTKDLGIDWRRGEAYFALQLN 403
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+DLA+NNG WQW+AS+GC +QP+FRIFNPI QS +FD +G FIR+YLPQL+ LS IH
Sbjct: 404 DYDLAANNGGWQWAASTGCDAQPYFRIFNPISQSLRFDAEGRFIRRYLPQLADLSRAAIH 463
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNR 469
+PW+A +L+ AG+ LG++YP P++EH+ +++ L R+ +K R
Sbjct: 464 APWQAKPLELQAAGVKLGRDYPMPVVEHAEARELTLARFAAVKGAAAR 511
>gi|326315673|ref|YP_004233345.1| deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323372509|gb|ADX44778.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 495
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 207/469 (44%), Positives = 315/469 (67%), Gaps = 18/469 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDS----DLIIRYAIAS 57
+V+CVF+FD +ILDPL DRR+EFI +S+++L +L++ LI+R+ +A+
Sbjct: 35 QVHCVFVFDTDILDPLPRA----DRRVEFIRESLVQLDASLRDLSGHRHGGLIVRHGVAA 90
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
+E+ L ++L + A+ NHD EP A+ RD ++ L G + +YKD +FE+ E+L +
Sbjct: 91 EEVPALAVRLGVQALFANHDDEPAALERDDRVRHRLGAGGVQMLTYKDHTVFERAEVLTQ 150
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
G PY++F+ Y+ W+ KV + YL +YPV+ + L + + ++ +L D+GF
Sbjct: 151 GGTPYTVFTPYKNAWLRKV--DAFYLSAYPVERHAGRLAPRPEGAR---GSVPALADIGF 205
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ L L + G GA+ LL++F+++I Y R++P++ G SYLS+HLRFGT+S R+
Sbjct: 206 EPAGLDRLPLPPGMEGARTLLDDFLQRIDQYGEARDFPAVKGPSYLSVHLRFGTLSPRRA 265
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESD 296
+ + +++ G TWLS+LIWRDFY +L +P V SFK YD I WE
Sbjct: 266 ARAAHERMRQ----GSTGAATWLSELIWRDFYFQVLAHHPQVAGGASFKPAYDAIPWEDG 321
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
A++ F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV ASFL+K++G++W+ GE YF
Sbjct: 322 PQAQERFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASFLVKDLGVDWRRGERYF 381
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
A KLNDFDL++NNG WQW++SSGC +QP+FRIFNP+ QS+KFD +G FIR YLPQL+ L
Sbjct: 382 AEKLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVSQSRKFDPKGRFIRLYLPQLAALP 441
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
++++H+PW+A +LE AG+ LG NYP PI++H +++ L RY +K+
Sbjct: 442 DRWLHAPWEAGPLELEAAGVRLGDNYPHPIVDHDEARQKTLARYAVVKS 490
>gi|398803290|ref|ZP_10562396.1| deoxyribodipyrimidine photolyase [Polaromonas sp. CF318]
gi|398097169|gb|EJL87481.1| deoxyribodipyrimidine photolyase [Polaromonas sp. CF318]
Length = 506
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/470 (48%), Positives = 312/470 (66%), Gaps = 21/470 (4%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-------NYDSDLIIRYA 54
+V+CVF+FD++ILD L DRR+EFI S++ L LQ N D+ LI+ +
Sbjct: 49 QVFCVFVFDRDILDALPRA----DRRVEFIHGSVLSLDGQLQRLGAAHGNPDAGLIVVHG 104
Query: 55 IASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEI 114
A++ + +L + +DAV NHD EPQ++ RD ++ L+ G F S+KD VIFE+ E+
Sbjct: 105 HAAEAVPRLAAEWAVDAVFANHDDEPQSLARDAAVQAALESRGVAFHSFKDHVIFERQEV 164
Query: 115 LNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLND 174
L GKPY++F+ Y+ W+ KV + YL+ YPV+ Y L + I SL +
Sbjct: 165 LTLAGKPYTVFTPYKNAWLRKV--DDFYLKPYPVERYGAALAAVPDRKRAIP----SLAE 218
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
LGF K+NLS+L I TG+ G + L F ++ NY R++P+I G SYL +HLRFGT+SI
Sbjct: 219 LGFEKTNLSALKIPTGSEGGEGLFEEFKGRVANYKAARDFPAIKGPSYLGVHLRFGTVSI 278
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
R+L +H D G TWLS+LIWRDFY IL +P+ V+ +FK EYD I WE
Sbjct: 279 RRLAAAALG--PEH--RDSEGAATWLSELIWRDFYAQILSNFPHAVHGAFKTEYDAIRWE 334
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
S A FL WC+G TGYPL+D+A+ Q+N +GYMHNRLRMVTASFL+K++GI+W+ GE
Sbjct: 335 SGAGADTLFLAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVTASFLVKDLGIDWRRGER 394
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YFA KLNDFDL++NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FIR+Y+P L+K
Sbjct: 395 YFAEKLNDFDLSANNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDADGSFIRRYVPALAK 454
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
L IHSPW A +L AG+++GK+YP PI++H ++ L+RY +K
Sbjct: 455 LPAAAIHSPWLAKPLELAAAGVVMGKDYPWPIVQHDEARALTLQRYAVVK 504
>gi|410694724|ref|YP_003625346.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
gi|294341149|emb|CAZ89550.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
Length = 497
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 207/462 (44%), Positives = 308/462 (66%), Gaps = 12/462 (2%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V F+FD++ILDPL +G+ DRR+EFI ++ E+ L+ + + LI+R+A A + I
Sbjct: 46 VALAFVFDRDILDPLLQRGLQADRRVEFILAAVAEIDAALREHGAALIVRHASAREAIPA 105
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L V D EP+A+ RD +++ L+ G + K+ +IFE++E+L GKPY
Sbjct: 106 LAAELGAQTVFCGRDDEPEALARDAAVERALRQDGRALRTVKEHMIFERDEVLTAQGKPY 165
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+ Y+ W+ + + PV S + + ++ + + +L++LGF SNL
Sbjct: 166 SVFTPYRTAWLARYAAQP----QQPVDSAVTSARLAALP-AALRQPLPTLSELGFAPSNL 220
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+L + GASGA L+++F ++I +Y+ R+YP+ G SYLS+HLRFGT+S+R+LV + +
Sbjct: 221 HALKLPLGASGAAALVDDFSRRIDDYDQARDYPARKGPSYLSVHLRFGTVSVRELVAMAW 280
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ G WLS+L+WRDFY IL+ +P+VVN +FK YD I W +D
Sbjct: 281 A----RQQAGSEGARVWLSELVWRDFYFQILFHHPHVVNAAFKPVYDRIQWRND---PAQ 333
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV ASFL K++GI+W+WGE YFA+ LND
Sbjct: 334 FAAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMVVASFLTKDLGIDWRWGERYFADHLND 393
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
FDLA+NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD G FIR+Y+P+L++ ++K IH+
Sbjct: 394 FDLAANNGGWQWAASSGCDAQPYFRIFNPVAQSEKFDAGGDFIRRYVPELAQFASKDIHA 453
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
PWKA + L+ AG+ LG YP PI+ H L++ L+RY +K
Sbjct: 454 PWKAPAALLQAAGVRLGSTYPVPIVRHDLARAETLERYAVVK 495
>gi|124265897|ref|YP_001019901.1| deoxyribodipyrimidine photo-lyase type I [Methylibium
petroleiphilum PM1]
gi|124258672|gb|ABM93666.1| Deoxyribodipyrimidine photo-lyase type I [Methylibium
petroleiphilum PM1]
Length = 497
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 211/471 (44%), Positives = 303/471 (64%), Gaps = 21/471 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSD-------LIIRYAI 55
V+ F+FD ILDPL DRR+EFI S+++L L LI+R+
Sbjct: 38 VWVAFVFDTEILDPLPRT----DRRVEFIRDSLVDLDAQLHTLGRSHGTEGVGLIVRHGR 93
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
A EI +L L++ AV N DYEP A+ RD ++ L G F KDQV+F+ +E+L
Sbjct: 94 ARDEIPRLAAALHVQAVYANTDYEPAAVARDAQVRGALAQTGIAFHPAKDQVVFDTDEVL 153
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
G PY +F+ Y+ W++K++ YLQ+YPV + L + +L +
Sbjct: 154 TGAGTPYGVFTPYKNAWLKKLEP--FYLQAYPVGRHAGALAPRPAGEAA---GVPTLAAI 208
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
GF +NL++L + G +G + LL +F ++I Y+ R++P++ G SYLS+HLRFGT+SI
Sbjct: 209 GFEPTNLAALKLAPGTAGGRALLEDFGDERIDRYDQTRDFPAVKGPSYLSVHLRFGTLSI 268
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
R+L +L + + + G WLS+LIWRDFY +L+ +P VV +SFK EYD I WE
Sbjct: 269 RELARLAWDRARAGSR----GAEVWLSELIWRDFYHQVLHHHPQVVERSFKPEYDKIKWE 324
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
+A F WC+G TGYPL+D+A++Q+N +GYMHNRLRMV ASFL K++G++W+ GE
Sbjct: 325 HGKHADALFAAWCEGRTGYPLVDAAMLQINQTGYMHNRLRMVVASFLCKDLGLDWRRGER 384
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YFA KLND+DLA+NNG WQW++SSGC +QP+FRIFNP+ QS+KFD QG FIR+YLPQL+
Sbjct: 385 YFAEKLNDYDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSQKFDAQGKFIRRYLPQLAA 444
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
L + +H+PW A L AG++LG++YP+PI+ H L+++ L RY +K
Sbjct: 445 LPDAALHAPWDAKPLDLVAAGLVLGRDYPEPIVRHELARERTLARYAVVKG 495
>gi|296136973|ref|YP_003644215.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
gi|295797095|gb|ADG31885.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
Length = 497
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 210/462 (45%), Positives = 307/462 (66%), Gaps = 12/462 (2%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V F+FD++ILDPL +G+ DRR+EFI ++ E+ L+ + LI+R+A A + I
Sbjct: 46 VALAFVFDRDILDPLLQRGLQADRRVEFILAAVAEIDAALRERGAALIVRHASAREAIPV 105
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L AV D EP A+ RD +++ L+ G S K+ +IFE++E+L KPY
Sbjct: 106 LAAELGAQAVFCGRDDEPAALARDAAVERALRQDGRALHSVKEHMIFERDEVLTAQDKPY 165
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+ Y+ W+ + + PV S + + + L + + +L++LGF SNL
Sbjct: 166 SVFTPYRTAWLARYAAQP----QQPVDSAVTS-ARLAALPAALQQPLPTLSELGFAPSNL 220
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+L + GASGA L+++F ++I +Y+ R+YP+ G SYLS+HLRFGT+S+R+LV + +
Sbjct: 221 HALKLPLGASGASALVDDFSRRIDDYDQARDYPARKGPSYLSVHLRFGTVSVRELVAMAW 280
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ G WLS+L+WRDFY IL+ +P+VVN +FK YD I W +D
Sbjct: 281 A----RQQAGSEGARVWLSELVWRDFYFQILFHHPHVVNAAFKPVYDRIQWRND---PAQ 333
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV ASFL K++GI+W+WGE YFA+ LND
Sbjct: 334 FAAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMVVASFLTKDLGIDWRWGERYFADHLND 393
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
FDLA+NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD G FIR+Y+P+L++L++K IH+
Sbjct: 394 FDLAANNGGWQWAASSGCDAQPYFRIFNPVAQSEKFDAGGDFIRRYVPELAQLASKDIHA 453
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
PWKA + L+ AG+ LG YP PI+ H L++ L+RY +K
Sbjct: 454 PWKAPAALLQAAGVRLGSTYPAPIVRHDLARAETLERYAVVK 495
>gi|295700812|ref|YP_003608705.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
gi|295440025|gb|ADG19194.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
Length = 499
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 212/467 (45%), Positives = 317/467 (67%), Gaps = 16/467 (3%)
Query: 3 VYCVFIFDKNILDPL------RSQG-IIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAI 55
V+CVF+FD IL P+ R G ++DRRI+FI S+ EL L+ L++ Y
Sbjct: 40 VWCVFVFDTTILQPIVDAWQTRHPGEPVKDRRIDFILASLAELDDALRANGGGLVVLYGD 99
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
++ + KL +L +DAV NHDYEP AI RD + + L G ++ ++KDQ IFE++E+L
Sbjct: 100 PAELVPKLAAELRVDAVFANHDYEPVAIERDATVGERLAEKGRQWLTFKDQTIFERDELL 159
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
N KP+++F+ Y+ W++++ + L+ YPV++Y +L + L ++ + +L+ L
Sbjct: 160 NGQDKPFAVFTPYKNAWLKQLSAFD--LKPYPVETYAKHL---AALPPKLDRRLPTLDQL 214
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
F SNL+ L + G SGA+ LL++F+ +I +Y R++P+ G SYLS+HLRFGT+SIR
Sbjct: 215 CFAPSNLTDLPLPAGMSGAQQLLDDFLTRIDSYAERRDFPAAKGPSYLSVHLRFGTVSIR 274
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWE 294
L +L ++ + D G TWLS+LIWRDFY M+L +P + FK EY+++ WE
Sbjct: 275 TLARLAYEM---SLQPDGKGAATWLSELIWRDFYFMVLAHHPRIAKGAPFKPEYEHLRWE 331
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
A F WC G TGYPL+D+A++QLN +GYMHNRLRMVTASFL K++G++W+ GE
Sbjct: 332 KGPSADAAFAAWCDGRTGYPLVDAAMLQLNHTGYMHNRLRMVTASFLAKDLGVDWRLGER 391
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YFA+ LNDFD ++NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FI++YLPQL++
Sbjct: 392 YFADLLNDFDFSANNGGWQWAASTGCDAQPYFRIFNPVTQSEKFDPDGRFIKRYLPQLAQ 451
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
L K+IH+PW A + +L + G++LG NYP+PI++H+ +++ L RY
Sbjct: 452 LPAKWIHAPWLAGAERLAEYGVVLGGNYPEPIVDHAQARERTLIRYG 498
>gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
Length = 504
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 209/472 (44%), Positives = 314/472 (66%), Gaps = 17/472 (3%)
Query: 3 VYCVFIFDKNILDPL--------RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYA 54
V+C F+FD IL PL G ++D RIEFI S+ EL +L+ LI+ +
Sbjct: 40 VWCAFVFDTTILQPLINWAHRRNAHAGKVQDARIEFILASVEELDRSLEEGGGALIVLHG 99
Query: 55 IASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEI 114
I KL +L +DAV NHDYEP AI RD+ + L+ G + ++KDQVIFE++E+
Sbjct: 100 DPVDAIPKLAAQLPVDAVFTNHDYEPSAIERDETVADRLRADGRRLLTFKDQVIFERDEL 159
Query: 115 LNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLND 174
LN KP+++F+ Y+ W++++ L+ YPV+ Y +L ++ + +++ +L
Sbjct: 160 LNGQRKPFAVFTPYKNAWLKQL--TPFDLKPYPVERYSQSL---ARPPRTLDHAWPTLAK 214
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
+GF L+ ++ G SGA+ L +F+ +I +Y R+ P+ GTS+LS+HLRFGT+SI
Sbjct: 215 MGFAPGKLAETELQAGMSGAQARLEDFLTRIDSYAERRDLPAARGTSHLSVHLRFGTVSI 274
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILW 293
R L +L + + G TWLS+LIWRDFY MIL +P++ + SFK+E+D + W
Sbjct: 275 RTLARLAHEM---SLRPGGQGAATWLSELIWRDFYFMILAHHPHIAKRESFKREFDALRW 331
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
E+ A F WC G TGYPL+D+A++QLN +G+MHNRLRMVTASFL+K++GI+W+ GE
Sbjct: 332 ETGKDADALFAAWCDGRTGYPLVDAAMLQLNRTGFMHNRLRMVTASFLVKDLGIDWRRGE 391
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YF KLNDFD ++NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD QG+FI+++LP+L
Sbjct: 392 RYFEEKLNDFDFSANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDSQGLFIKRFLPELG 451
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
K+ K+IH+PW+A LE G++LGK+YP P++EH+ +++ L RY +++
Sbjct: 452 KVPAKWIHAPWQADPDDLEDWGVVLGKDYPHPVVEHAKARQQTLARYGVLRS 503
>gi|89900170|ref|YP_522641.1| deoxyribodipyrimidine photolyase [Rhodoferax ferrireducens T118]
gi|89344907|gb|ABD69110.1| Deoxyribodipyrimidine photo-lyase type I [Rhodoferax ferrireducens
T118]
Length = 492
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 214/467 (45%), Positives = 301/467 (64%), Gaps = 17/467 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDS----DLIIRYAIAS 57
+++CVF+FD++ILD L DRR+EFI S+ EL + L LI+R+A+AS
Sbjct: 33 QLHCVFVFDRDILDTLPR----ADRRVEFIRASLCELDVALGQLSGKAGVGLIVRHAVAS 88
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
+EI L L + AV HDYEPQA+ RD ++ L +G + KD VIFE EIL+K
Sbjct: 89 EEIVTLAKTLQVQAVFAAHDYEPQALARDARVRGALAHVGIVLHTCKDHVIFENREILSK 148
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
TG PY +F+ Y+ W+ V +L+ + LV + + + +L +GF
Sbjct: 149 TGTPYGVFTPYKNTWLATVTPQ--HLRHHDATPVAQALVPRPE---GLQQPVPTLAAIGF 203
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
K+NLS L I TGASG L +F +++ +Y+ R+ P++ G SYL +HLRFGT+S+R+L
Sbjct: 204 EKTNLSQLKIPTGASGGARLFEDFFERMDSYHETRDLPAVKGPSYLGVHLRFGTVSVRQL 263
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + + G WL +LIWRDFY IL +P+V +FK EYD I WE
Sbjct: 264 AATALQRQIQGSR----GAAVWLGELIWRDFYFSILANFPHVAQGAFKPEYDAIKWEHGK 319
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+A F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV SFL+K++GI+W+WGE YFA
Sbjct: 320 HADSLFQAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVAGSFLVKDLGIDWRWGEKYFA 379
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
LNDFDLA+NNG WQW +SSGC +QP+FRIFNP+ QS+KFD G FIR+YLPQL++L +
Sbjct: 380 RHLNDFDLAANNGGWQWVSSSGCDAQPYFRIFNPVTQSEKFDADGKFIRRYLPQLARLPS 439
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
K IH+PW A + +L+ G+ LG+NYP PI+ H+ ++ L+RY +K
Sbjct: 440 KVIHAPWTAQALELQMEGVTLGQNYPAPIVAHAAARALTLQRYAVVK 486
>gi|334132216|ref|ZP_08505977.1| Deoxyribodipyrimidine photolyase [Methyloversatilis universalis
FAM5]
gi|333442862|gb|EGK70828.1| Deoxyribodipyrimidine photolyase [Methyloversatilis universalis
FAM5]
Length = 483
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 309/463 (66%), Gaps = 18/463 (3%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V+CVF+FD +IL+ L ++G+ DRR+EFI S+ EL L+ LI+R+ A I +
Sbjct: 34 VWCVFVFDTDILNELLAEGLSADRRVEFIHASVSELDAALRALGGGLIVRHGRARGLIPR 93
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L + AV+ N DYEP A+ RD+ + L G F ++KDQVIFE +E+L + GKP+
Sbjct: 94 LARQLGVAAVLANRDYEPGALARDRAVHDALAQDGIGFDTFKDQVIFECDEVLTQGGKPF 153
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+ Y+ W++K+ +L++YPV++Y L I SL D+GF +NL
Sbjct: 154 SVFTPYKNAWLKKL--TPFHLKAYPVRTYAGALA------APPAGTIPSLADMGFAPTNL 205
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+L + TG SGA L + F +I Y + R++P+ G SYLS+HLRFGT+SIR+L +
Sbjct: 206 PTLKLPTGMSGADTLFDGFCDRIDRYKVLRDFPAAKGPSYLSVHLRFGTVSIRRLAR--- 262
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ H + G TWLS+LIWRDFY IL+ P+V+ SF+ EYD + W D+ +
Sbjct: 263 ---EAHARGGA-GAETWLSELIWRDFYFQILWHNPHVLTGSFRPEYDAVHWVDDD---EK 315
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYPL+D+A QL +GYMHNRLRMV+ASFL K++GI+W+ GE++FA +LND
Sbjct: 316 FRAWCEGRTGYPLVDAAQRQLAQTGYMHNRLRMVSASFLTKDLGIHWRRGEHWFARQLND 375
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
FDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FIR+Y P+L+K K IH+
Sbjct: 376 FDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDADGQFIRRYCPELAKFDKKRIHA 435
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PW A+ + + AG ++G +YP PI++H+ +++ L R+ +K
Sbjct: 436 PWLATPLEQKMAGCVIGSDYPAPIVDHAAAREATLARFKVVKG 478
>gi|383760053|ref|YP_005439039.1| deoxyribodipyrimidine photo-lyase Phr [Rubrivivax gelatinosus
IL144]
gi|381380723|dbj|BAL97540.1| deoxyribodipyrimidine photo-lyase Phr [Rubrivivax gelatinosus
IL144]
Length = 501
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 202/476 (42%), Positives = 313/476 (65%), Gaps = 26/476 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNY-------DSDLIIRYAI 55
V+CVF+FD++ILD L DRR+EFI S++ + L+ + LI+R+
Sbjct: 34 VWCVFLFDRDILDALPRA----DRRVEFIRDSVVGVDAELRALAASHGIEGAGLIVRHGR 89
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
A ++I +L L + AV +HD EP+A++RD ++ L G F S KD V+FE++E+L
Sbjct: 90 ALEQIPRLAAALGVQAVFASHDDEPEALVRDARVRGALADAGVAFHSMKDHVVFERDEVL 149
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+ G P+S+F+ Y+ W++K+ + YL SYPV+ + L K + +L ++
Sbjct: 150 TQGGGPFSVFTPYRNAWLKKL--DDFYLASYPVERHAGALAP-----KPAGETLPTLAEI 202
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF +NL +L + +G +G + LL +F+++I +Y R++P++ G SYL HLRFGT+SIR
Sbjct: 203 GFETTNLHALKLPSGPAGGRELLADFLERIDHYADWRDFPAVKGPSYLGPHLRFGTLSIR 262
Query: 236 KLVKLIFKFIKKHYKTDC--IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
+L + + H ++ G WLS+LIWR+FY +L+ +P VV FK EYD + W
Sbjct: 263 RLAR------EAHQRSTAGSRGAEIWLSELIWREFYHQLLHHHPRVVGGCFKPEYDRLHW 316
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
E +A + F WC+G TGYP++D+A+ QL +GYMHNRLRM++ASFL K++GI+W+ GE
Sbjct: 317 EHGKHADELFAAWCEGRTGYPIVDAAMHQLTRTGYMHNRLRMISASFLTKDLGIDWRRGE 376
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
+FA LNDFDLASNNG WQW+AS+GC +QP+FRIFNP+ QS++FD +G FIR+YLPQL+
Sbjct: 377 AWFARHLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVAQSERFDPEGRFIRRYLPQLA 436
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNR 469
+L + +H+PW+A L AG++LG++YP+P++ H +++ L R+ +K + R
Sbjct: 437 RLPDALLHAPWRARPADLAAAGVVLGRDYPEPVVAHDEARERTLARFAAVKPVKPR 492
>gi|445499214|ref|ZP_21466069.1| FAD-bining deoxyribodipyrimidine photolyase PhrB [Janthinobacterium
sp. HH01]
gi|444789209|gb|ELX10757.1| FAD-bining deoxyribodipyrimidine photolyase PhrB [Janthinobacterium
sp. HH01]
Length = 490
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/462 (47%), Positives = 306/462 (66%), Gaps = 18/462 (3%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
VYCVF++D ILD L + DRR++FI SI E+S LQ LI+R+A A+ I
Sbjct: 44 VYCVFVYDTTILDSLPRR----DRRVDFIHASIAEVSAELQQLGGHLIVRHADAAAAIPA 99
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L +DAV NHDYEPQAI RD +++ L+ G +FFSYKDQVIFEK+E+L++TG +
Sbjct: 100 LAAELGVDAVFCNHDYEPQAIARDAAVERALRADGRQFFSYKDQVIFEKSEVLSQTGGVF 159
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+ Y+ W++K+ ++ L Y ++ + +L +LGF SNL
Sbjct: 160 SVFTPYKNAWLKKLDADPSVLAPY----HIEPHAARLAPPPANAPALPTLAELGFEPSNL 215
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ L I TG SGA L +F+ +I Y R+YP++ G SYLS+H RFGT+S+R LV+ +
Sbjct: 216 AELKIPTGMSGAAQLFEDFLPRIAGYKDARDYPAVKGPSYLSLHFRFGTLSVRHLVRTVL 275
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + G WL++LIWR+FY MILY P+VV ++K YD I WE+ A +
Sbjct: 276 DLTARGAGGE--GAPVWLAELIWREFYAMILYHNPHVVGGAYKPAYDAIQWETGPEADEL 333
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
+ WC+G TGYPL+D+A+ QLN +GYMHNRLRMVTA FLIK++GI+W+ GE YFA LND
Sbjct: 334 YAAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRMVTACFLIKDLGIDWRRGEAYFALHLND 393
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
FDLASNNG WQW++SSGC +QP+FRIFNP+ QS+KFD +G FIR+YLPQL L++K IH+
Sbjct: 394 FDLASNNGGWQWASSSGCDAQPYFRIFNPVTQSEKFDSKGKFIRRYLPQLKDLTDKEIHA 453
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
PW A +L +YP+P++ H ++K L+RY +K
Sbjct: 454 PWLAPR--------MLPLDYPEPLVMHDEARKRTLERYAVVK 487
>gi|149926765|ref|ZP_01915025.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
gi|149824694|gb|EDM83910.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
Length = 500
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/463 (46%), Positives = 312/463 (67%), Gaps = 15/463 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V+CVF++DK ILD L ++ DRR+EFI++S + L LQ + DL + Y A I
Sbjct: 48 QVHCVFVYDKTILDALPNKA---DRRVEFIWESCMALKTKLQGFGGDLHLMYDHAETAIP 104
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L KL + AV N DYEP AI RD + K L+ G + F +KDQ IFE++E+L + GK
Sbjct: 105 DLATKLGVQAVFTNKDYEPAAIHRDITVGKTLQGKGIELFRFKDQAIFEEDEVLTQAGKF 164
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+S+F+ ++ ++K+ + +L YP ++ + +L S L SL+ +GF ++N
Sbjct: 165 FSVFTPFKNACLKKL--DAFHLTPYPSEARVGSLAKDSNL------TAPSLDHMGFKRTN 216
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L + IK G GA +F+ ++ Y + R++P+I G SYLS+H RFGTISIR+L K
Sbjct: 217 LLDM-IKPGEEGALDAFEDFLNRMDKYKVARDFPAIKGVSYLSVHNRFGTISIRRLAKAA 275
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ K +G WL++LIWRDFY I+Y P+ K+FK EYD I W++D A++
Sbjct: 276 YDRFKFDGSEGAMG---WLNELIWRDFYFQIIYHRPDAAEKAFKPEYDQIQWDADEKAQR 332
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYPL+D+A QLN +G+ HNRLRMVTASFL K++G++W+WGE YFA LN
Sbjct: 333 LFKAWCEGKTGYPLVDAAQRQLNQTGFQHNRLRMVTASFLTKDLGLDWRWGEKYFAEHLN 392
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
DFDL++NNG WQW+ASSGC +QP+FRIFNP QS+KFD G FIRKY P+L+KLSNKYIH
Sbjct: 393 DFDLSANNGGWQWAASSGCDAQPYFRIFNPYSQSEKFDADGKFIRKYCPELAKLSNKYIH 452
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+P + ++L+ AG++LG+ YP+P++EH +++K L+RY+ +K
Sbjct: 453 NPAECPPFELQMAGVVLGETYPRPVVEHDVARKKTLERYSVVK 495
>gi|119899747|ref|YP_934960.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
gi|119672160|emb|CAL96074.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
Length = 503
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 201/470 (42%), Positives = 306/470 (65%), Gaps = 27/470 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-------NYDSDLIIRYAI 55
VYC F+FD +ILD L ++ DRR+EFI +++EL L+ S LI+R+
Sbjct: 53 VYCAFVFDTDILDALPTRA---DRRVEFIHAAVVELDRALEALSREAGGSGSGLIVRHGR 109
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
A + I L L +DAV +N DYEP AI RD+ + + L G +KDQVIF+++E+L
Sbjct: 110 AQEAIPALAQALGVDAVYVNRDYEPAAIARDRAVAERLAEHGRTLRDFKDQVIFDRDEVL 169
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+ G+P+S+F+ Y+ W+ K+ + YLQ+YP+ L K + +L +
Sbjct: 170 TQAGQPFSVFTPYKNAWLRKL--DPFYLQAYPIAPRARRLAP-----KPAGEGVPALGRI 222
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF ++L L + TGASGA+ L +F +I++Y I R++P++ G SYLS HLRFGTI +R
Sbjct: 223 GFEPTDLRGLALPTGASGARALFGDFCGRIEDYRIARDFPAVKGVSYLSTHLRFGTIPVR 282
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+L G TWLS+LIWRDFYQMIL+ +P VV+++F+ E+D I W+
Sbjct: 283 ELAAYAVH-------QGGAGAQTWLSELIWRDFYQMILWHHPRVVDQAFRPEFDRIRWDD 335
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
A F W +G TGYP++D+ + QL SGYMHNRLRM+ ASFL K++G++W+ GE +
Sbjct: 336 ---APALFDAWREGRTGYPIVDAGMRQLLRSGYMHNRLRMIVASFLTKDLGVDWRLGERH 392
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA LND+DLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD +G FIR+Y+P+L+++
Sbjct: 393 FAAHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPVTQSQKFDPEGRFIRRYVPELARV 452
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+++IH+PW+ + +A + +G++YP P+++H+L+++ L R+ K
Sbjct: 453 PDRHIHAPWQMDAATQSRACVQIGRDYPAPVVDHALARERTLARFAVTKG 502
>gi|253997258|ref|YP_003049322.1| deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
gi|253983937|gb|ACT48795.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
Length = 473
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/460 (47%), Positives = 309/460 (67%), Gaps = 22/460 (4%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+VYCVF+FD +IL+ L + DRR+EFI++S+ EL LQ SDLI+ + A E+
Sbjct: 31 QVYCVFVFDTDILNQLSDKA---DRRVEFIWESVQELKTALQQRGSDLIVLHGSAQHEVP 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L L AV NHDYEP AI RD + ++L+ F YKDQ IFEK+E+L KP
Sbjct: 88 QLAQTLQAQAVFANHDYEPSAIARDAQVAQQLQAHDIDFHHYKDQAIFEKDEVLTMAHKP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
YS+F+ Y+ W++ V N YL++YPV+ YLN KL KI + SL GF ++N
Sbjct: 148 YSVFTPYKNAWLKTV--NDFYLKAYPVEHYLN------KLAKIQPQPLASLESFGFQRTN 199
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
LSSL + TG SG+ L ++FI++IK+Y R++P++ G SYLS+HLRFGTISIR+L +
Sbjct: 200 LSSLRLPTGMSGSATLFDDFIERIKHYKEARDFPAVKGVSYLSVHLRFGTISIRQLARTA 259
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAK 300
+ G TWLS+LIWRDFY IL+ P + K+FK E++ I + + +
Sbjct: 260 MQI-------GGFGAETWLSELIWRDFYFQILHHNPQLEAGKAFKTEFEAIAFPN---SA 309
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F WC+G TGYPL+D+A+ QLN++G+MHNRLRMV ASFL+K++ I+W+WGE YFA L
Sbjct: 310 TLFTAWCEGKTGYPLVDAAMRQLNTTGFMHNRLRMVAASFLVKDLLIDWRWGERYFAENL 369
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
DFD ++NNG WQW+AS+GC +QP+FRIFNPI QS++FD G FIRKY+ +L++ ++K I
Sbjct: 370 IDFDFSANNGGWQWAASTGCDAQPWFRIFNPITQSERFDGHGKFIRKYVAELAQCNDKEI 429
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
H+PW S+ + ++G+NYPKPI++H+ ++ +L Y
Sbjct: 430 HAPWLMSAQRQSSINTVIGQNYPKPIVDHATQRERVLSLY 469
>gi|257095136|ref|YP_003168777.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047660|gb|ACV36848.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 482
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 199/463 (42%), Positives = 304/463 (65%), Gaps = 14/463 (3%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V+C F+FD+ ILD L + DRR+EFI +S++EL L+ L++R+ A++EI
Sbjct: 30 VFCAFVFDREILDALDHEA---DRRVEFIRESLVELDAALRTRGGALLVRHGWATREIPD 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L + AV +N DYEP A RD + LK G F S+KDQ I + +E+L++ G+PY
Sbjct: 87 LARGLGVAAVFVNRDYEPGAKQRDAAVSAALKADGIAFESFKDQAILDGDEVLSQAGRPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y+ W++++ + Y P ++ L + + + L +GF ++L
Sbjct: 147 TVFTPYRNAWLKRLTDDDWY----PHQAGSGVLAATPA-----ADGVPPLAKIGFSGTDL 197
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
LGI G G + LL +F+ +I Y R++P++ G SYLS+HLRFGT+S+R LV
Sbjct: 198 RRLGIVPGMRGGRQLLADFLGRIGRYRQQRDFPAVKGVSYLSVHLRFGTVSVRDLVAKAI 257
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
++ G TWLS+L+WRDFY MIL +P+VV ++FK YD I W++ A+
Sbjct: 258 A--AGAFREGGEGAATWLSELVWRDFYFMILDRFPHVVERAFKPAYDLINWQAGAQAEDA 315
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC G TGYPL+D+A+ QLNSSGYMHNRLRM+ ASFL K++GI+W+ GE YFA +LND
Sbjct: 316 FSAWCAGRTGYPLVDAAMRQLNSSGYMHNRLRMLVASFLTKDLGIDWRLGERYFARQLND 375
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+DL++NNG WQW+AS+GC +QP+FRIFNP+ QS++FD G FIR+YLP+L+ + +++IH+
Sbjct: 376 YDLSANNGGWQWAASTGCDAQPYFRIFNPVTQSERFDPAGKFIRRYLPELANVPDRFIHA 435
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PW+ SS + G+++G+ P P+++H +++ L+RY +K+
Sbjct: 436 PWRMSSVEQSACGVLIGRTTPAPLVDHDQARQRTLERYAIVKS 478
>gi|332524149|ref|ZP_08400379.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
gi|332107488|gb|EGJ08712.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
Length = 505
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 200/465 (43%), Positives = 302/465 (64%), Gaps = 22/465 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNY-------DSDLIIRYAI 55
V+CVF+FD IL+PL DRR+EFI S++ + L+ + LI+R+
Sbjct: 34 VWCVFVFDPEILEPLPRA----DRRVEFIRDSVVGVDAELRALAASHGIDGAGLIVRHGR 89
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
+EI +L L AV +HD EP+A+ RD ++ L G F KD VIFE++E+L
Sbjct: 90 PLQEIPRLAAALGAQAVYASHDDEPEALARDARVRGALADAGIAFHGSKDHVIFERDEVL 149
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+ G P+S+F+ Y+ W++K+ + YL SYPV+ + L K + +L D+
Sbjct: 150 TQGGGPFSVFTPYRNAWLKKL--DDFYLSSYPVERHAGALAP-----KPAGETLPTLADI 202
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF +NL +L + +G +G + LL +F++++ +Y R++P++ G SYL HLRFGT+SIR
Sbjct: 203 GFESTNLHALKLPSGPAGGRELLADFLERVDHYADWRDFPAVKGPSYLGPHLRFGTVSIR 262
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+L + + + + G WLS+L+WRDFY +L+ +P VV FK EYD + WE
Sbjct: 263 RLAREAHQRLTAGSR----GAEVWLSELVWRDFYHQLLHHHPRVVGGCFKPEYDRLHWEH 318
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+A + F WC+G TGYP++D+A+ QL +GYMHNRLRM++ASFL K++GI+W+ GE +
Sbjct: 319 GKHADELFAAWCEGRTGYPIVDAAMHQLTRTGYMHNRLRMISASFLTKDLGIDWRRGEAW 378
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA LNDFDLASNNG WQW+AS+GC +QP+FRIFNP+ QS++FD +G FIR+YLPQL+KL
Sbjct: 379 FARHLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVSQSERFDPEGRFIRRYLPQLAKL 438
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+ +H+PW+A L AG++LG++YP P++ H +++ L R+
Sbjct: 439 PDTLLHAPWRARPADLAAAGVVLGRDYPAPVVAHEEARERTLARF 483
>gi|171463059|ref|YP_001797172.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192597|gb|ACB43558.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 490
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/471 (46%), Positives = 311/471 (66%), Gaps = 16/471 (3%)
Query: 2 EVYCVFIFDKNILDPL-----RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIA 56
+V+ FIFD IL PL + G+ DRR++FI++ I ++ L+ LI+R++
Sbjct: 29 QVWLAFIFDTEILKPLLRGKLDANGLKHDRRVDFIWQGIKQIDDQLRAQGGGLIVRFSNP 88
Query: 57 SKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN 116
++ I +L +L ++AV NHDYEP AI RD+++ +L+ G +F ++KDQVIFEK EIL
Sbjct: 89 TECIPQLASELGVNAVFANHDYEPSAIERDEVVTAKLEKEGIEFLTFKDQVIFEKKEILT 148
Query: 117 KTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
+ +SIF+ Y+ W + ++ L +Y L + + K I+ + SL +G
Sbjct: 149 NSNTVFSIFTPYKNNWFKTLQEKD--LAAYECNPKPGQL---AAIPKKISKPLPSLESMG 203
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
FC + + S + G+ G + L +F+ +I Y I+R++P+I G SYLS HLRFG +SIR
Sbjct: 204 FCPTGIESY-LPPGSEGGQAFLEDFLTRIDQYQISRDFPAIKGVSYLSTHLRFGMLSIRG 262
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWES 295
LV+ + +G WLS+LIWRDFY MIL +P + SFK +YDNI+WES
Sbjct: 263 LVREA----HRRMLAGSMGATIWLSELIWRDFYFMILANHPRLAKGASFKPDYDNIVWES 318
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
AKK F WC+G TGYPL+D+A+ QLN SGYMHNRLRMV ASFL K++GI+W+WGE Y
Sbjct: 319 GATAKKLFTAWCEGKTGYPLVDAAMHQLNQSGYMHNRLRMVVASFLTKDLGIDWRWGEAY 378
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA LNDF+L+SNNG WQW +SSGC +QP+FRIFNPI QS+KFD +G FI++YLPQL KL
Sbjct: 379 FAEHLNDFELSSNNGGWQWVSSSGCDAQPYFRIFNPITQSEKFDPEGKFIKRYLPQLEKL 438
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
S K +H+PWKA +LE AGI L K+YP P+++H ++K L RY+ +K I
Sbjct: 439 SKKSVHTPWKAGHIELEAAGISLDKDYPLPVVDHDEARKKTLVRYSVVKKI 489
>gi|333916551|ref|YP_004490283.1| deoxyribodipyrimidine photo-lyase [Delftia sp. Cs1-4]
gi|333746751|gb|AEF91928.1| Deoxyribodipyrimidine photo-lyase [Delftia sp. Cs1-4]
Length = 493
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 201/468 (42%), Positives = 304/468 (64%), Gaps = 13/468 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNY----DSDLIIRYAIAS 57
+V+CVFIFD +IL PL DRR+EFI +S+ L L+ D+ LI+R +
Sbjct: 33 QVHCVFIFDDDILAPLPRA----DRRVEFICQSLSGLDDALREASGRADTGLIVRRGRPA 88
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
++I L +L AV N D EP A+ RD +++ L G S+KD ++F ++E+L +
Sbjct: 89 EQIPDLARQLGAQAVFCNWDDEPDALARDARVRQALAAEGVALHSFKDHMVFARDEVLTQ 148
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
G P+S+F+ Y+ W+ ++ +L +YP + L + + + + DLGF
Sbjct: 149 AGAPFSVFTPYKNAWLRQI--TPFFLSAYPSERDLPERLAPRPEGE--RRPVPTAADLGF 204
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
L L + TG +GA+ LL +F+ ++ Y R++P++ G SYLS+HLRFGT+SIR+L
Sbjct: 205 EAGTLDGLRLPTGCAGAEELLADFLPRLPRYKQARDFPAVKGPSYLSVHLRFGTVSIRRL 264
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+L ++ + D G TWLS+LIWRDFY IL +P+VV+ SFK YD I+W++
Sbjct: 265 ARLAWEQTQSQ-PHDAEGAATWLSELIWRDFYFQILAHHPHVVHASFKPAYDAIVWDTGP 323
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A + WC+G TGYPL+D+A+ QLN++GYMHNRLRMV ASFL+K++GI+W+ GE +FA
Sbjct: 324 EADALYAAWCEGRTGYPLVDAAMRQLNTTGYMHNRLRMVAASFLVKDLGIDWRRGEAWFA 383
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+LNDFDLA+NNG WQW+AS+GC +QP+FRIFNPI QS+KFD FI +Y+P+L++L
Sbjct: 384 RQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPITQSQKFDADARFIERYVPELARLPA 443
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
H+PW+A +L +AG++LG +YP P+++H+ +++ L RY +K
Sbjct: 444 ALRHAPWQARPLELAEAGVVLGTDYPHPVVDHAAARERTLARYGVVKQ 491
>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
Length = 471
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 210/455 (46%), Positives = 299/455 (65%), Gaps = 22/455 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD +IL L +DRR++FI++S L L DL+IR+ + EI +
Sbjct: 34 VLPVFVFDASILAALPR----DDRRVDFIWQSAAALKAELNQLGGDLLIRHGLPQHEIPR 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L +AV N DYEP A RD + + L G F KDQVIFE +E+L GKP+
Sbjct: 90 LAAELGAEAVFCNRDYEPAARARDAEVAQRLAEQGVAFRDSKDQVIFETDEVLTGAGKPF 149
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+ Y+ W++K+ +LQ+YPV+ YL+ L+ ++ SL D+GF S+L
Sbjct: 150 SVFTPYKNAWLKKL--TPFHLQAYPVRRYLDALMPREP------QSMPSLADIGFLPSDL 201
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+SL +K GA+GA+ L +F +I+ Y R++P + G SYLS+HLRFGT+SIR+L
Sbjct: 202 ASLPVKAGAAGAEALFADFAGRIERYKAQRDFPGVKGVSYLSVHLRFGTLSIRRLAAYA- 260
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ G TWLS+LIWRDFYQ +L+ P+ +FK EYD + + +D +
Sbjct: 261 ------WHDGGEGAMTWLSELIWRDFYQQVLWHRPDAAKHAFKPEYDALPFPND---PEW 311
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYPL+D+A+ QLN SGYMHNRLRMV ASFL+K++ I+W+WGE YFA KL D
Sbjct: 312 FDAWREGRTGYPLVDAAMRQLNRSGYMHNRLRMVAASFLVKDLLIDWRWGEQYFAEKLLD 371
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
FDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FIR+Y+P+L+ L +K IH+
Sbjct: 372 FDLAANNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDPDGRFIRRYVPELAALPDKLIHA 431
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
PW+A +L AG+ LG++YP PI++H++ ++ L
Sbjct: 432 PWQAKPEQLMSAGVRLGRDYPHPIVDHAVQRELAL 466
>gi|160897024|ref|YP_001562606.1| deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
gi|160362608|gb|ABX34221.1| Deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
Length = 493
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 200/468 (42%), Positives = 304/468 (64%), Gaps = 13/468 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNY----DSDLIIRYAIAS 57
+V+CVFIFD +IL PL DRR+EFI +S+ L L+ D+ LI+R +
Sbjct: 33 QVHCVFIFDDDILAPL----PCADRRVEFICQSLSGLDDALRQASGRADTGLIVRRGQPA 88
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
++I L +L AV N D EP A+ RD +++ L G S+KD ++F ++E+L +
Sbjct: 89 EQIPDLARQLGAQAVFCNWDDEPDALARDTRVRQALAAEGVALHSFKDHMVFARDEVLTQ 148
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
G P+S+F+ Y+ W+ ++ +L +YP + L + + + + DLGF
Sbjct: 149 AGAPFSVFTPYKNAWLRQI--TPFFLSAYPSERDLPERLAPRPEGE--RRPVPTAADLGF 204
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
L L + TG +GA+ LL +F+ ++ Y R++P++ G SYLS+HLRFGT+SIR+L
Sbjct: 205 EAGTLDGLRLPTGCAGAEELLADFLPRLPRYKQARDFPAVKGPSYLSVHLRFGTVSIRRL 264
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+L ++ + D G TWLS+LIWRDFY IL +P+VV+ SFK YD I+W++
Sbjct: 265 ARLAWEQTQSQ-PHDAEGAATWLSELIWRDFYFQILAHHPHVVHASFKPAYDAIVWDTGP 323
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A + WC+G TGYPL+D+A+ QLN++GYMHNRLRMV ASFL+K++GI+W+ GE +FA
Sbjct: 324 EADALYAAWCEGRTGYPLVDAAMRQLNTTGYMHNRLRMVAASFLVKDLGIDWRRGEAWFA 383
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+LNDFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD FI +Y+P+L++L
Sbjct: 384 RQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQKFDADARFIERYVPELARLPA 443
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
H+PW+A +L +AG++LG +YP P+++H+ +++ L RY +K
Sbjct: 444 ALRHAPWQARPLELAEAGVVLGTDYPHPVVDHAAARERTLARYGVVKQ 491
>gi|241764783|ref|ZP_04762791.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
gi|241365713|gb|EER60409.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
Length = 488
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/469 (45%), Positives = 311/469 (66%), Gaps = 17/469 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDS----DLIIRYAIAS 57
+V+CVF+FD+ ILD L DRR+ FI ++++EL L+ S LI+R+A+A+
Sbjct: 33 KVHCVFVFDRAILDALPR----ADRRVAFIREALVELDAALRTLASHPAGGLIVRHALAT 88
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
+ +L L AV NHD EPQA+ RD L++ L G F ++KD + E++E+L +
Sbjct: 89 DAVPELAQALQAQAVYANHDDEPQALSRDSLVRTRLAQTGIAFHTFKDHTLLERDEVLTQ 148
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
G PYS+F+ Y+ W+ + + + LQSY V + + L + + +L LGF
Sbjct: 149 AGTPYSVFTPYKNAWLRTIDAFQ--LQSYAVVRHAHRLAPRPAPECL---PVPALGALGF 203
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ + LG+ TG+SGA L +F+++I Y R+YP+I G SYLS+HLRFGTIS R L
Sbjct: 204 EAAQNTPLGLPTGSSGAMRLFEDFLQRIHRYADTRDYPAIKGPSYLSVHLRFGTISPRLL 263
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + G TWL++LIWRDFY IL +P+VV +SFK YD I WE+ +
Sbjct: 264 ARSAHALAQGGNP----GATTWLNELIWRDFYCQILAHHPHVVERSFKPAYDAIQWETGD 319
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A+ F WC+G TGYPL+D+A+ QLN +GYMHNRLRMV ASFL+K++GI+W+WGE+YFA
Sbjct: 320 EAQALFSAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRMVAASFLVKHLGIDWRWGEHYFA 379
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
LNDFDLA+NNG WQW++SSGC +QP+FRIFNP+ QS+KFD +G FIR+YLPQL+ L
Sbjct: 380 THLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEKFDAEGRFIRRYLPQLAALPL 439
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+H+PW+A +L++AG++LG +YP+PI++H +++ L+RY +K
Sbjct: 440 AALHAPWRARPLELQEAGVVLGHHYPQPIVDHDSARQRTLQRYAVVKTT 488
>gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 492
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/471 (45%), Positives = 307/471 (65%), Gaps = 16/471 (3%)
Query: 2 EVYCVFIFDKNILDPL-----RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIA 56
+V+ FIFD+ IL PL +Q + DRR++FI++ + ++ L+ LI+R+
Sbjct: 29 QVWVTFIFDEEILKPLLKGELDAQRLKHDRRVDFIWQGLEQIDEELRKQGGGLIVRFGKP 88
Query: 57 SKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN 116
+ I ++ L +D V NHDYEP AI RD+ +K L +F S+KDQVIFEK EIL
Sbjct: 89 VECIPQIAKDLGVDTVFTNHDYEPSAIARDEAVKTLLAKSDIQFESFKDQVIFEKKEILT 148
Query: 117 KTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
+ +SIF+ Y+ W++ ++ L +Y + + + K + I +L +G
Sbjct: 149 NSNTVFSIFTPYKNNWLKTLQEKD--LVAYECSAKPGQF---AAIPKKLAQEIPTLESMG 203
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
FCK+ + + + GA G + L +F+ +I Y + R++P+I G SYLS HLRFG +SIR
Sbjct: 204 FCKTGIEAY-LPPGAEGGQAFLEDFLPRIDQYQVGRDFPAIKGVSYLSTHLRFGMLSIRG 262
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWES 295
LV+ + +G WLS+LIWRDFY MIL +P + SFK +YDNI+WE
Sbjct: 263 LVREA----HRRMLAGSMGATIWLSELIWRDFYFMILANHPRLAKGASFKPDYDNIVWEQ 318
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ AKK F WC+G TGYPL+D+A+ QLN SGYMHNRLRMV ASFL K++G++W+WGE Y
Sbjct: 319 GSVAKKLFAAWCEGKTGYPLVDAAMHQLNQSGYMHNRLRMVVASFLTKDLGVDWRWGEAY 378
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA LNDF+L+SNNG WQW++SSGC +QP+FRIFNPI QS+KFD +G FIR+YLPQL+ L
Sbjct: 379 FAEHLNDFELSSNNGGWQWASSSGCDAQPYFRIFNPITQSEKFDPEGKFIRRYLPQLNHL 438
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
S K IH+PWKA +LE AGI LG++YP P+++H ++K L RY+ +K +
Sbjct: 439 SKKSIHAPWKAGHIELEAAGITLGRDYPLPVVDHDEARKKTLVRYSVVKKV 489
>gi|253999882|ref|YP_003051945.1| deoxyribodipyrimidine photo-lyase [Methylovorus glucosetrophus
SIP3-4]
gi|253986561|gb|ACT51418.1| Deoxyribodipyrimidine photo-lyase [Methylovorus glucosetrophus
SIP3-4]
Length = 481
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/459 (45%), Positives = 303/459 (66%), Gaps = 22/459 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
VYC F+FD +ILD L + DRR+EFI++S+ EL L++ DLI+ +A A + I
Sbjct: 33 VYCAFVFDTDILDALPDRA---DRRVEFIWESVRELQQALRSQGGDLIVLHACAKEAIPA 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +KL +AV N DYEP A+ RD + +L F YKDQVIFE++E+L + GKPY
Sbjct: 90 LAVKLKANAVYSNRDYEPDAVARDAKVAAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPY 149
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y+ ++K+ N YLQ+YPV Y +L S K + +L +GF ++NL
Sbjct: 150 GVFTPYKNAHLKKL--NDFYLQAYPVDRYRQHLAASDK------TEMPTLESMGFARTNL 201
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ + + TG SG + L F +++ Y R++P++ G SYLS+HLRFGT+SIR L +
Sbjct: 202 AEMKLPTGMSGGQQLFAEFQERMARYKDARDFPAVKGPSYLSVHLRFGTVSIRHLARTA- 260
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKK 301
++ G TWL++LIWRDFY +L+ +P V ++FK E+D I + + +
Sbjct: 261 ------WQQHNAGAETWLNELIWRDFYFQVLHHHPQVAAGRAFKLEFDAIAFPNQ---QA 311
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYPL+D+A+ QLN +GYMHNRLRMVTASFL+K++ I+W+WGE YFA +L
Sbjct: 312 LFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTASFLVKDLLIDWRWGERYFAERLI 371
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
DFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD QG FIRKY+P+L+ K IH
Sbjct: 372 DFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDAQGKFIRKYVPELAACHEKEIH 431
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+PW + + G+++GK+YP P++EHS+ ++ L Y
Sbjct: 432 APWLMPPLRQQSLGLVIGKDYPAPVVEHSVQREKALSLY 470
>gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
Length = 470
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/464 (45%), Positives = 306/464 (65%), Gaps = 28/464 (6%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+VYC F+FD ILDPL ++ DRR+ FI +S++EL L+ LIIR+ A EI
Sbjct: 31 QVYCAFVFDSEILDPLPTR---HDRRVHFIRESLVELDAALRARGGGLIIRHGQAVDEIP 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L + AV N DYEP A RD + ++L+ F KDQ IF+ +E+L + GK
Sbjct: 88 ALARRLGVSAVFTNRDYEPSAKRRDAQVARQLRNDDIAFHGVKDQAIFDGDEVLTQAGKA 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+S+F+ Y+ W++++ + ++P L + I +L ++GF ++
Sbjct: 148 FSVFTPYKNAWLKRLTTAD--YAAWPCDGRLAGQELA---------GIPTLEEIGFTPTD 196
Query: 182 LSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
L+ LGI+ G SGAK L ++F + +I+ Y R++P++ G SYLS+HLRFGTISIR+LV+
Sbjct: 197 LAELGIQPGMSGAKGLWDDFSRDRIERYGSLRDFPAVKGVSYLSVHLRFGTISIRQLVRQ 256
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
++ D TWLS+LIWRDFY MIL +P+V +FK EYD I W S A
Sbjct: 257 ALA-----HQAD-----TWLSELIWRDFYFMILDHFPHVAGHAFKPEYDAIQWASRPEA- 305
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F WC+G TGYPL+D+A+ QLN SG+MHNRLRMV ASFL K++GI+W+ GE YFA +L
Sbjct: 306 --FAAWCEGCTGYPLVDAAMRQLNFSGWMHNRLRMVVASFLTKDLGIDWRLGEKYFAEQL 363
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDFDL++NNG WQW++SSGC +QP+FRIFNP+ QS+KFD +G FIR+Y+P+L+K+ +KYI
Sbjct: 364 NDFDLSANNGGWQWASSSGCDAQPYFRIFNPVTQSEKFDAEGKFIRRYVPELAKVHDKYI 423
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H+PWK + E G+++G++YP PI++H+ ++ L RY +K
Sbjct: 424 HAPWKMGRIEQEALGVVIGRDYPSPIVDHATARDETLARYAVVK 467
>gi|313201853|ref|YP_004040511.1| deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
gi|312441169|gb|ADQ85275.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
Length = 481
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 208/459 (45%), Positives = 301/459 (65%), Gaps = 22/459 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
VYC F+FD +ILD L + DRR+EFI++S+ EL L++ DLI+ +A A + I
Sbjct: 33 VYCAFVFDTDILDALPDRA---DRRVEFIWESVRELQQALRSQGGDLIMLHACAKEGIPA 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +KL AV N DYEP A+ RD + +L F YKDQVIFE++E+L + GKPY
Sbjct: 90 LAVKLKASAVYSNRDYEPDAVARDAEVAAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPY 149
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y+ ++K+ N YLQ+YPV Y +L + K + +L +GF ++NL
Sbjct: 150 GVFTPYKNAHLKKL--NDFYLQAYPVDRYRQHLAAADK------TEMPTLESMGFARTNL 201
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ + TG SG + L F +++ Y R++P++ G SYLS+HLRFGT+SIR L +
Sbjct: 202 GEMKLPTGMSGGQQLFAEFQERMARYKDARDFPAVKGPSYLSVHLRFGTVSIRHLARTA- 260
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKK 301
++ G TWL++LIWRDFY +L+ +P V ++FK E+D I + + +
Sbjct: 261 ------WQQHNAGAETWLNELIWRDFYFQVLHHHPQVAAGRAFKLEFDAIAFPNQ---QA 311
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYPL+D+A+ QLN +GYMHNRLRMVTASFL+K++ I+W+WGE YFA +L
Sbjct: 312 LFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTASFLVKDLLIDWRWGERYFAERLI 371
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
DFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD QG FIRKY+P+L+ K IH
Sbjct: 372 DFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDAQGKFIRKYVPELAACHEKEIH 431
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+PW + + G+++GK+YP P++EHS+ ++ L Y
Sbjct: 432 APWLMPPLRQQSLGLVIGKDYPAPVVEHSVQREKALALY 470
>gi|264680117|ref|YP_003280026.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
gi|262210632|gb|ACY34730.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
Length = 512
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/471 (45%), Positives = 299/471 (63%), Gaps = 20/471 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNY----DSDLIIRYAIASK 58
+YCVF+FD +IL L DRR+EFI +S+ EL+ L+ + LI R +
Sbjct: 50 LYCVFVFDDSILAALPRA----DRRVEFICQSLTELAAALRETAGRPQTGLITRRGLPQD 105
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
I L +L AV N D EP AI RD + + LK G +KD IF ++E+L ++
Sbjct: 106 IIPALARQLGAGAVFCNDDDEPAAIARDAQVARSLKSQGQLLLRFKDHRIFARDEVLTQS 165
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN---IISLNDL 175
P+S+F+ Y+ W+ K+ YL +YP + L +SKL + + I S DL
Sbjct: 166 LSPFSVFTPYKNAWLRKI--TPFYLSAYPSERDL-----ASKLADLPDTERRPIPSAADL 218
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF L+ L + TG SGA+ LL +F+ ++ Y R++P++ G SYLS+HLRFGT+SIR
Sbjct: 219 GFAPDTLAGLRLPTGVSGARQLLADFLPRLPQYKTARDFPALKGPSYLSVHLRFGTVSIR 278
Query: 236 KLVKLIFKFIKKHYKTDCI--GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
+L +L + + G TWLS+LIWRDFY IL P VV +SFK YD I W
Sbjct: 279 ELARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQILAHQPYVVERSFKPAYDAIEW 338
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
E+ A F WC+G TGYPL+D+A+ QLNSSGYMHNRLRMVTASFL+K++G++W+ GE
Sbjct: 339 ETGAEADTLFAAWCEGRTGYPLVDAAMRQLNSSGYMHNRLRMVTASFLVKDLGLDWRRGE 398
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YFA KLNDFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FI +Y+P+L+
Sbjct: 399 AYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPDGKFIVRYVPELT 458
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
L K H+PW A +L +AGI LG++YP P+++H+ +++ L RY +K
Sbjct: 459 PLPAKLRHAPWLAKPLELAEAGITLGRDYPLPVVDHAAAREKTLARYGILK 509
>gi|297539339|ref|YP_003675108.1| Deoxyribodipyrimidine photo-lyase [Methylotenera versatilis 301]
gi|297258686|gb|ADI30531.1| Deoxyribodipyrimidine photo-lyase [Methylotenera versatilis 301]
Length = 479
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/460 (46%), Positives = 313/460 (68%), Gaps = 22/460 (4%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+VYCVF+FD IL+ L + DRR+EFI++S+ EL +LQ + SDLI+ + A EI
Sbjct: 38 KVYCVFVFDTAILNQLNDKA---DRRVEFIWESVRELKTSLQKHGSDLIVLHGNAGDEIP 94
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
KL L ++AV NHDYEP AI RD + ++L F YKD VIFEK+E+LN +GKP
Sbjct: 95 KLANTLLVNAVFTNHDYEPSAITRDAHVAEQLNKSSIAFHHYKDHVIFEKDEVLNLSGKP 154
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y+ W++ V N + ++YPV ++LNNL ++ + ISL DLGF +N
Sbjct: 155 YCVFTPYKNMWLKTV--NDFFFKAYPVDNHLNNLAKTNA------SPFISLEDLGFKHTN 206
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L+S+ + TG G L N+FI+++ Y R++P+I G SYLS+HLRFGTISIR L +
Sbjct: 207 LASMRLPTGMQGGLTLFNDFIERMSRYKDARDFPAIKGVSYLSVHLRFGTISIRHLAR-- 264
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
+ ++ G TWLS+LIWRDFY IL+ P+V +++K E++++ + +D
Sbjct: 265 -----EAMQSANTGAQTWLSELIWRDFYVQILHHNPSVAAGRAYKVEFESLKFPNDTAL- 318
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F WC G TGYPL+D+A+ QLN++G+MHNRLRMV ASFL+K++ I+W+WGE YFA KL
Sbjct: 319 --FQAWCDGKTGYPLVDAAMRQLNTTGFMHNRLRMVAASFLVKDLLIDWRWGERYFAEKL 376
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
DFDL++NNG WQW+AS+GC +QP+FRIFNPI QS++FD QG FIRKY+P+L+K ++K I
Sbjct: 377 IDFDLSANNGGWQWAASTGCDAQPWFRIFNPITQSERFDAQGKFIRKYVPELTKCNDKEI 436
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
H+PW +L++ + +GK+Y P+++H+ + L Y
Sbjct: 437 HAPWLIPLLRLQELNLSIGKDYAAPVVDHATQRLQALALY 476
>gi|299534052|ref|ZP_07047404.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
gi|298717961|gb|EFI58966.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
Length = 490
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/471 (45%), Positives = 301/471 (63%), Gaps = 20/471 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNY----DSDLIIRYAIASK 58
+YCVF+FD +IL L DRR+EFI +S+ EL L+ + LI R +
Sbjct: 28 LYCVFVFDDSILATLPHA----DRRVEFICQSLAELDAALRETAGRPQTGLITRRGLPQD 83
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
I L +L AV N D EP AI RD + + LK G +KD IF ++E+L ++
Sbjct: 84 IIPALARQLGAGAVFCNDDDEPAAIARDAQVARSLKSQGQLLLRFKDHRIFARDEVLTQS 143
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN---IISLNDL 175
P+S+F+ Y+ W+ K+ YL +YP + L +SKL + ++ I + DL
Sbjct: 144 LSPFSVFTPYKNAWLRKI--TPFYLSAYPSERDL-----ASKLADLPDSERRPIPTAADL 196
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF L+ L + TG SGA+ LL +F+ ++ Y R++P++ G SYLS+HLRFGT+SIR
Sbjct: 197 GFAPDTLAGLRLPTGVSGARQLLADFLPRLPQYKTARDFPALKGPSYLSVHLRFGTVSIR 256
Query: 236 KLVKLIFKFIKKHYKTDCI--GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
+L +L + + G TWLS+LIWRDFY IL P VV +SFK YD I W
Sbjct: 257 ELARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQILAHQPYVVERSFKPAYDAIEW 316
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
E+ A F WC+G TGYPL+D+A+ QLNSSGYMHNRLRMVTASFL+K++G++W+ GE
Sbjct: 317 ETGAEADPLFAAWCEGRTGYPLVDAAMRQLNSSGYMHNRLRMVTASFLVKDLGLDWRRGE 376
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YFA KLNDFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FI +Y+P+++
Sbjct: 377 AYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPDGKFIARYVPEVA 436
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+L +K H+PW A +L +AGI LG++YP P+++H+ +++ L RY +K
Sbjct: 437 QLPSKLRHAPWLAKPLELAEAGIALGRDYPLPVVDHAAAREKTLARYGILK 487
>gi|237654350|ref|YP_002890664.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
gi|237625597|gb|ACR02287.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
Length = 484
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 202/471 (42%), Positives = 303/471 (64%), Gaps = 29/471 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSD-------LIIRYAI 55
V+C F+FD ILD L ++ DRR+EFI S+ EL L LI+R+
Sbjct: 30 VHCAFVFDTAILDALPARA---DRRVEFIHASLAELDAALDAMARAAGGTGGGLIVRHGR 86
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
A EI +L +L +D V N DYEP AI+RD + + L G + +KDQV+FE++E+L
Sbjct: 87 AEDEIPRLAAELGVDKVFANRDYEPDAILRDSRVAQRLAEDGIGYEDFKDQVVFERDEVL 146
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+TGKPYS+F+ Y+ W++ V ++ + S+ V+ Y +L K + L D+
Sbjct: 147 TQTGKPYSVFTPYKNAWLKAVDDSQ--VSSHAVEKYAAHLAP-----KPAGETLPGLADI 199
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF +NL+ L + G SG K L ++F +I+ Y R++P++ G SYLS HLRFGT+SIR
Sbjct: 200 GFAPTNLAELNMPVGMSGGKRLFDDFAARIERYKRARDFPAVKGVSYLSTHLRFGTVSIR 259
Query: 236 KLVKLIFKFIKKHYKT-DCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
+L H + G TWLS+LIWRDFY IL+ +P VV+++F+ EYD + W+
Sbjct: 260 QLAA--------HARARGGEGAETWLSELIWRDFYHQILWHHPQVVDRAFRPEYDAVQWD 311
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
A + F WC+ TGYP++D+A+ QL+ +G+MHNRLRM+ ASFL K++G++W+ GE
Sbjct: 312 D---APELFAAWCEARTGYPIVDAAMRQLDQTGWMHNRLRMIVASFLTKDLGVDWRLGER 368
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YFA +LND+DLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD +G FIR+YLP+L++
Sbjct: 369 YFAIRLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPEGRFIRRYLPELAR 428
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ +K+IH+PW +G +YP PI++H+ +++ L+R+ +KN
Sbjct: 429 VPDKFIHAPWTMGGIDQTACRTKIGVDYPGPIVDHAAARERTLQRFGVVKN 479
>gi|388567569|ref|ZP_10154000.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
gi|388265174|gb|EIK90733.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
Length = 496
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 201/470 (42%), Positives = 301/470 (64%), Gaps = 20/470 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSD-------LIIRYAI 55
++CVF+FD+ ILDPL DRR+EFI +S++ L L+ ++ LI+ +
Sbjct: 33 LWCVFVFDREILDPLPR----ADRRVEFIRESLVALDARLRELGAEHGQANTGLIVLHDR 88
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
A I L +L AV NHD EP A+ RD + L G ++KD VIFE+ E+L
Sbjct: 89 AQHAIPALAQRLGAQAVFANHDDEPAALTRDAQVLGALAHQGVLLRTHKDHVIFERREVL 148
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+ + + +F+ Y+ W++ + +L++YP+ + L + L + ++ + +L ++
Sbjct: 149 TQAERAFGVFTPYKNAWLKAL--TPFHLKAYPITKHAGAL---APLPEGLSRPVPTLAEI 203
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF ++NL+ L + TG GA L ++F+++I Y+ R+YP+I G SYLS HLRFGT+SIR
Sbjct: 204 GFERTNLAQLPLPTGEDGAHQLFDDFLQRIDRYDEARDYPAIKGPSYLSAHLRFGTVSIR 263
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
L + + + G TWLS+LIWRDFY IL +P+V +FK YD + +E
Sbjct: 264 ALASIAHEL----HAQGNPGASTWLSELIWRDFYHQILSNFPHVAQSAFKPAYDAVRYEH 319
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
A F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV ASFL+K++GI+W+WGE Y
Sbjct: 320 GKAADALFKAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASFLVKDLGIHWQWGERY 379
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA L D+DLA+NNG WQW++SSGC +QP+FRIFNP+ QS++FD QG FIR+YLPQL++L
Sbjct: 380 FAEHLIDYDLAANNGGWQWASSSGCDAQPWFRIFNPVTQSERFDPQGRFIRRYLPQLAEL 439
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ IH+PWKA+ +L AG+ +G +YP P++ H +++ L RY +K
Sbjct: 440 PDHAIHAPWKATPVELAAAGVEIGVHYPAPLVNHVVARDKTLARYAVVKE 489
>gi|375107513|ref|ZP_09753774.1| deoxyribodipyrimidine photolyase [Burkholderiales bacterium
JOSHI_001]
gi|374668244|gb|EHR73029.1| deoxyribodipyrimidine photolyase [Burkholderiales bacterium
JOSHI_001]
Length = 498
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/471 (43%), Positives = 307/471 (65%), Gaps = 21/471 (4%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINL----QNYDSD---LIIRYA 54
+V+C F+FD+ ILD L DRR+EFI S+++L L Q++ D LI+ +
Sbjct: 41 QVWCAFVFDRAILDTLPRA----DRRVEFIHHSLVDLDAQLRALGQSHGVDGAGLIVLHG 96
Query: 55 IASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEI 114
A+ + +L +L + AV +HD EP A+ RD + L G S+KD V+FE++E+
Sbjct: 97 HATAALPRLAAELGVQAVFSHHDDEPDALARDAKVLGALADAGILLRSFKDVVVFERSEV 156
Query: 115 LNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLND 174
L G Y++F+ Y+ W+ +V+++ + + + + I SL
Sbjct: 157 LTGAGGAYNVFTPYKNAWLRRVQADDLAAHAVARHAAALAALPEGR------GGIPSLAQ 210
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
+GF +NL +L + TG+SGA LL++F+++I Y +R++P+I G SYLS HLRFGT+SI
Sbjct: 211 IGFEPTNLRALKLPTGSSGAHELLDDFLERIDRYAEHRDFPAIRGPSYLSTHLRFGTVSI 270
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
R+L + ++ ++ + G WLS+LIWRDFY IL+ +P VV FK EYD + W+
Sbjct: 271 RRLAREAWQRMQGGSR----GAEVWLSELIWRDFYHQILHHHPRVVGHCFKPEYDRLKWD 326
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
+A F WC+G TGYPL+D+A+ QLN SGYMHNRLRMV ASFL K++G++W+ GE
Sbjct: 327 HGKHADALFAAWCEGRTGYPLVDAAMHQLNDSGYMHNRLRMVVASFLTKDLGLDWRRGEA 386
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YFA LNDFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD +G FI++YLPQL+K
Sbjct: 387 YFALHLNDFDLAANNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDPEGKFIKRYLPQLAK 446
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
LS K +H+PW A +L AG+ LG++YP+P+++H L+++ L+R+ ++
Sbjct: 447 LSAKDVHAPWLAKPLELAAAGLELGRDYPQPVVDHDLARQRTLERFAAVRG 497
>gi|221065219|ref|ZP_03541324.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
gi|220710242|gb|EED65610.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
Length = 496
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/468 (44%), Positives = 296/468 (63%), Gaps = 14/468 (2%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNY----DSDLIIRYAIASK 58
+YCVF+FD +IL L DRR+EFI +S+ EL L+ + LI R +
Sbjct: 34 LYCVFVFDDSILAALPRA----DRRVEFICQSLAELDAALRETTGRPQTGLITRRGLPQD 89
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
I L +L AV N D EP A+ RD + + LK G +KD IF ++E+L ++
Sbjct: 90 IIPALARQLGAGAVFCNDDDEPAALARDAQVARSLKSQGQLLLRFKDHRIFARDEVLTQS 149
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
P+S+F+ Y+ W+ K+ YL +YP + L + + + L I S DLGF
Sbjct: 150 LSPFSVFTPYKNAWLRKI--TPFYLSAYPSERDLASKL--ADLPDTERRTIPSAADLGFA 205
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
L+ L + TG SGA+ LL +F+ ++ Y R++P++ G SYLS+HLRFGT+SIR+L
Sbjct: 206 PDTLAGLRLPTGVSGARRLLADFLPRLPQYKAARDFPALKGPSYLSVHLRFGTVSIRELA 265
Query: 239 KLIFKFIKKHYKTDCI--GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+L + + G TWLS+LIWRDFY IL P VV +SFK YD I WE+
Sbjct: 266 RLAHEAAHHEDWSAAAREGAATWLSELIWRDFYFQILAHQPYVVERSFKPAYDAIEWETG 325
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
A F WC+G TGYPL+D+A+ QLN+SGYMHNRLRMVTASFL+K++G++W+ GE YF
Sbjct: 326 AEADALFAAWCEGRTGYPLVDAAMRQLNTSGYMHNRLRMVTASFLVKDLGLDWRRGEAYF 385
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
KLNDFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD +G FI +Y+P+L+ L
Sbjct: 386 GEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPEGKFIVRYVPELTPLP 445
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
K H+PW A +L +AGI LG++YP P+++H+ +++ L RY +K
Sbjct: 446 AKLRHAPWLAKPLELAEAGIALGRDYPLPVVDHAAAREKTLARYGILK 493
>gi|389871451|ref|YP_006378870.1| deoxyribodipyrimidine photo-lyase [Advenella kashmirensis WT001]
gi|388536700|gb|AFK61888.1| deoxyribodipyrimidine photo-lyase [Advenella kashmirensis WT001]
Length = 473
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/463 (44%), Positives = 304/463 (65%), Gaps = 15/463 (3%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V+C+F+FD +IL L +DRR+ FI + +L LQ S LI+R+ + I
Sbjct: 25 VFCLFVFDTHILSTLPP----DDRRVAFIDACLDDLQRQLQQAGSGLIVRHGTPQQMIPD 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ LN++AV DYEPQA RD+ + L +FF +KDQVIF+ +EILN G+PY
Sbjct: 81 IAQALNVEAVFAGSDYEPQAKERDREVSARLAADNREFFLFKDQVIFDTDEILNGQGRPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y+ W++ ++S + + PV++ L + + + + L D+GF
Sbjct: 141 KVFTAYKNAWLKALRSE--HYSAAPVETLTCAL---APVPQALTQRPC-LKDIGFIPPA- 193
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ + G+S A+ L +F+ ++ Y+ R++P++ G SYLS+HLRFGT+SIR+LVK+
Sbjct: 194 QPVPMAAGSSAAQEALQDFLPRMNAYDAKRDFPALRGPSYLSVHLRFGTLSIRQLVKVAC 253
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ T G TWLS+LIWRDFY MIL+ +P V + +F +YD I WES A+++
Sbjct: 254 SAMS----TGSQGAATWLSELIWRDFYFMILHHFPQVADHAFNAKYDAIEWESGPQAERH 309
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
FL WC+G TGYP++D+ + QLN +GYMHNRLRM+ ASFL K++GI+WK GE+YFA KLND
Sbjct: 310 FLAWCQGKTGYPIVDAGMRQLNQTGYMHNRLRMIVASFLTKDLGIDWKRGEHYFALKLND 369
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
FDLA+NNG WQW+AS+GC +QP+FRIFNPI QS+KFD G FIR+Y+P+L+ LS+K+IH+
Sbjct: 370 FDLAANNGGWQWAASTGCDAQPYFRIFNPITQSQKFDPDGKFIRRYVPELAALSDKHIHA 429
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PW A+ + L A I L YP+P+++H +++ L RY + +
Sbjct: 430 PWTAADHVLAAAQIELDTTYPRPVVDHKAARRIALARYGELTD 472
>gi|427400664|ref|ZP_18891902.1| hypothetical protein HMPREF9710_01498 [Massilia timonae CCUG 45783]
gi|425720177|gb|EKU83100.1| hypothetical protein HMPREF9710_01498 [Massilia timonae CCUG 45783]
Length = 484
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/463 (43%), Positives = 298/463 (64%), Gaps = 14/463 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V+CVF++D +ILD L +DRR+ FI S+ L L+ LI+R+ A E+
Sbjct: 31 QVFCVFVYDTDILDGLPR----DDRRLRFIHASLASLDEELRRLGGYLIVRHGSARDEVV 86
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L L++DAV DYEP AI RD + L G F +YKDQVIFEK+E+L G+P
Sbjct: 87 ALAKALDVDAVHACTDYEPLAIARDDEVALLLAAQGSAFHTYKDQVIFEKDEVLTLAGQP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
YS+F+ Y+ W +++ ++ L +YPV + + S + SL D+GF +
Sbjct: 147 YSVFTPYKNAWRKRLAAHPETLAAYPVDACAHAFAPPSS-----PPALPSLEDIGF---D 198
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ G +GA+ L F++ I +Y R++P+ +GTS LS HLRFGT SIR LV+
Sbjct: 199 AGESPLPAGMAGAEALFEAFVEDIADYGRARDFPAEDGTSRLSTHLRFGTTSIRHLVRTA 258
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ G WLS+LIWRDFY M+L +P+V+ +SFK +D + W+ A +
Sbjct: 259 QQLTLS--GAGGAGASVWLSELIWRDFYAMVLARHPHVLERSFKPAFDAVQWDDGPDADE 316
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYPL+D+A++QLN++G+MHNRLRMVTASFL K++GI+W+ GE YFA +LN
Sbjct: 317 LFAAWCEGRTGYPLVDAAMVQLNTTGFMHNRLRMVTASFLTKDLGIDWRRGEAYFALQLN 376
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+++ASNNG WQW+AS+GC +QP+FRIFNP+ QS +FD +G FIR+YLPQL KL K IH
Sbjct: 377 DYEMASNNGGWQWAASTGCDTQPWFRIFNPVTQSTRFDARGEFIRRYLPQLRKLDAKQIH 436
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+PW+ L + G++LG++YP P+++H +++ L+R+ ++
Sbjct: 437 APWQVKPEALAERGVVLGEDYPAPVVDHDAARRRTLERFAVVR 479
>gi|393775732|ref|ZP_10364042.1| deoxyribodipyrimidine photo-lyase [Ralstonia sp. PBA]
gi|392717262|gb|EIZ04826.1| deoxyribodipyrimidine photo-lyase [Ralstonia sp. PBA]
Length = 533
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/466 (43%), Positives = 300/466 (64%), Gaps = 18/466 (3%)
Query: 3 VYCVFIFDKNILDPL-RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
V CVF+FD ++L+PL R+ RR+ F+ + L L + LI+++ A + +
Sbjct: 57 VLCVFVFDPDLLEPLARAPDRAGHRRVAFLHGCVAALDAALAVSGNRLIVQHGRAVESLA 116
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
LV L IDA+ N DYEP AI RD+ + L+ + C F +KDQVIFE+ E+L G+P
Sbjct: 117 SLVETLGIDALFYNRDYEPAAIARDEAVTARLQALSCVCFDFKDQVIFERGEVLTAQGQP 176
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLV--HSSKLHKIINNNIISLNDLGFCK 179
+S+F+ Y+ W+ ++ P ++V + + +L LGF
Sbjct: 177 FSVFTPYKNAWLRRLT---------PADLAPRDVVLRAAPAAEPTAAATMPTLAQLGF-D 226
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
+ + + G++ A+ LL++F+ ++ +Y++ R++P++ G SYLS HLRFGT+SIR L
Sbjct: 227 AAPETPPLAPGSAAAEALLDDFLARLDDYHVRRDFPAVRGPSYLSAHLRFGTVSIRTLAA 286
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNY 298
+ + + G TWLS+LIWR+FY MIL +P V +SFK EYD I W
Sbjct: 287 CAHQRMLAGSR----GAETWLSELIWREFYMMILAHHPRVAAGESFKPEYDRIRWAEGTA 342
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
A++ F WC G TGYPL+D+A++QLN++GYMHNRLRMVTASFL K++GI+W+ GE YFA
Sbjct: 343 AEEAFAAWCAGRTGYPLVDAAMLQLNTTGYMHNRLRMVTASFLCKDLGIDWRRGEAYFAA 402
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
+L D D A+NNG WQW++SSGC +QP+FRIFNP+ QS +FD QG FIR+YLPQL+KL ++
Sbjct: 403 RLTDHDFAANNGGWQWASSSGCDAQPYFRIFNPVTQSTRFDPQGKFIRRYLPQLAKLPDR 462
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
IH+PW AS+ L +AG+ LGK+YP P+++H+ +++ L+RY +K
Sbjct: 463 DIHAPWAASATVLAEAGVKLGKDYPYPLVDHAEARQQTLERYQVVK 508
>gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
Length = 481
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/461 (43%), Positives = 305/461 (66%), Gaps = 23/461 (4%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V C F+FD +ILD L +DRR+EFI++S+ EL + LQ DL++R+ A++EI
Sbjct: 29 QVVCAFVFDTDILDGLPR----DDRRVEFIWESVRELKLALQERGGDLLVRHGKATEEIP 84
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L L ++ V N DYEP A+ RD + ++L G F S+KDQVIFE++EI+ K+G P
Sbjct: 85 ALASVLGVECVYCNRDYEPAAVKRDDTVSQQLGTQGIAFKSFKDQVIFERDEIMTKSGTP 144
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+S+F+ Y+ + K+ + +L++YPV Y+++L S+ + SL L F +SN
Sbjct: 145 FSVFTPYKNACLRKL--DDFHLKAYPVDRYIHHLAQSAP------QPMPSLESLAFARSN 196
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L L + TG SG L +F +++ Y R++P++ G SYLS+HLRFGT+SIR L +
Sbjct: 197 LKQLRLPTGMSGGMALFEDFSERMPRYRDARDFPALKGPSYLSVHLRFGTVSIRHLARTA 256
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
++ G TWL++L+WRDFY +LY +P V SFK E+++I + + +
Sbjct: 257 -------WQQGGAGAETWLNELLWRDFYFQVLYHHPQVAEGHSFKPEFEHIPFPN---GE 306
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F WC+G TGYPL+D+A+ Q+N +GYMHNRLRMV A FL+K++ I+W+WGE YFA KL
Sbjct: 307 SLFKAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMVAAGFLVKDLLIDWRWGERYFAEKL 366
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
DFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD +G FIRKY+P+L +K I
Sbjct: 367 IDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPEGKFIRKYVPELQPCDDKEI 426
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
H+PW + + G+++GK+YP P+++H++ ++ +L Y
Sbjct: 427 HAPWLIPPLRQQALGLVIGKDYPAPVVDHAMRREQVLSLYR 467
>gi|418529913|ref|ZP_13095840.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni ATCC
11996]
gi|371452969|gb|EHN65994.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni ATCC
11996]
Length = 496
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/471 (45%), Positives = 296/471 (62%), Gaps = 20/471 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNY----DSDLIIRYAIASK 58
+YCVF+FD +IL L DRR+EFI +S+ EL L+ + LI R +
Sbjct: 34 LYCVFVFDDSILAALPRA----DRRVEFICQSLTELDAALREAAGRAHTGLITRRGLPQD 89
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
I L +L AV N D EP A+ RD + + LK G +KD IF ++E+L +
Sbjct: 90 IIPALARQLGAGAVFCNDDDEPAALARDAQVARSLKSQGQLLLRFKDHRIFARDEVLTQN 149
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN---IISLNDL 175
P+S+F+ Y+ W+ K+ YL +YP + L +SKL + + I S DL
Sbjct: 150 LSPFSVFTPYKNAWLRKI--TPFYLSAYPSERNL-----ASKLADLPDTERRPIPSAADL 202
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF L+ L + TG SGA+ LL +F+ ++ Y R++P++ G SYLS+HLRFGT+SIR
Sbjct: 203 GFAPDTLAGLRLPTGVSGARQLLADFLPRLPQYKTARDFPALKGPSYLSVHLRFGTVSIR 262
Query: 236 KLVKLIFKFIKKHYKTDCI--GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
+L +L + + G TWLS+LIWRDFY IL P VV +SFK YD I W
Sbjct: 263 ELARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQILAHQPYVVERSFKPAYDAIEW 322
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
E+ A F WC+G TGYPL+D+A+ QLN+SGYMHNRLRMVTASFL+K++G++W+ GE
Sbjct: 323 ETGAEADALFAAWCEGRTGYPLVDAAMRQLNTSGYMHNRLRMVTASFLVKDLGLDWRRGE 382
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YFA KLNDFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FI +Y+P+L+
Sbjct: 383 AYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPDGKFIARYVPELT 442
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
L K H+PW A ++ +AGI LG +YP P+++H+ +++ L RY +K
Sbjct: 443 PLPAKLRHAPWLAKPLEMAEAGIALGLDYPLPVVDHAAAREQTLARYGILK 493
>gi|121594169|ref|YP_986065.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42]
gi|120606249|gb|ABM41989.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42]
Length = 488
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/469 (42%), Positives = 304/469 (64%), Gaps = 24/469 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDS-------DLIIRYA 54
VYCVF+FD +ILD L ++ DRR+EFI S+ L +L+ + LI+R+
Sbjct: 30 RVYCVFVFDTDILDALPTRC---DRRVEFIHASVCALDEDLRALAARSGAPGGGLIVRHG 86
Query: 55 IASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEI 114
A + I +L L + V+ N DYEP A+ RD+ + L G F YKDQV+ E+ E+
Sbjct: 87 TAVQCIVQLARSLGVREVLANRDYEPAALARDRRVADGLAACGIAFSDYKDQVLLEQGEV 146
Query: 115 LNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLND 174
LN+ G+PYS+F+ Y++ W++K+ + + + YPV+ + +L + +L D
Sbjct: 147 LNQQGQPYSVFTPYKRTWLQKLDAFQT--KPYPVERHAQHLAVPPA-----GERLPTLAD 199
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
LGF +NL+ L + G+ GA+ LL +F+ ++ Y + R++P G SYLS+HLRFGT+SI
Sbjct: 200 LGFVPTNLADLQLPVGSRGAQQLLQDFLPRMAAYKLARDFPGRKGVSYLSVHLRFGTVSI 259
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
R+L L + C G TWLS+L WRDFY MIL+ +P+VV ++F+ EYD + W+
Sbjct: 260 RQLASLA----ARQAAQGCQGAQTWLSELAWRDFYFMILWHHPHVVTQAFRPEYDRVQWD 315
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
A + + WC TGYPL+D+A+ QL +GYMHNRLRMV ASFL K++GI+W+ GE
Sbjct: 316 D---APEYWQAWCAARTGYPLVDAAMRQLLQTGYMHNRLRMVVASFLTKDLGIDWRRGER 372
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
+FA LND+DLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FIR+YLP+L+
Sbjct: 373 FFAQHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVAQSQKFDPDGRFIRRYLPELAC 432
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +K++H P +L+ G+ LG +YP P+++H+ +++ L R++F+
Sbjct: 433 VPDKHLHFPAGMKPLELQACGLRLGIDYPLPVVDHASARERTLMRFHFL 481
>gi|347541255|ref|YP_004848681.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
gi|345644434|dbj|BAK78267.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
Length = 469
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/459 (44%), Positives = 304/459 (66%), Gaps = 25/459 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V CVF+FD++ILD L +Q D R++FI+ S++EL +L+ SDL++ I
Sbjct: 31 VICVFVFDRDILDHLPAQ----DHRVDFIWHSLMELKEHLRALGSDLVVASGRPVDCIPA 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + V + DYEP A RD + + L G + + KDQVIFE++E+L GKPY
Sbjct: 87 LAQEHGASTVWASRDYEPAACQRDAAVAERLSRHGTRLETVKDQVIFEQDEVLTVNGKPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y+ W++K+ +LQ+YP YLN +L ++ + SL DLGF + L
Sbjct: 147 TVFTPYRNAWLKKLIP--FFLQAYPSTRYLN------RLARLAETPLPSLADLGFTDTGL 198
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
LGI+ G +GA + +F ++I++Y R++P+ G SYLS+HLRFGTISIR+L +
Sbjct: 199 GRLGIRAGMAGAAAVFADFGQRIEHYQQWRDFPAAKGVSYLSVHLRFGTISIRQLAQFA- 257
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
++ G TWL++LIWR+FYQ +L+ YP+VV +SFK EY + + +D+
Sbjct: 258 ------WQQGSAGATTWLNELIWREFYQQLLWHYPHVVEESFKPEYRQLGFPNDD---SL 308
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F+ WC G TGYPL+D+A+ QL SGYMHNRLRMVTASFL+K++ ++W+WGE YFA KL D
Sbjct: 309 FVAWCAGRTGYPLVDAAMRQLEYSGYMHNRLRMVTASFLVKDLLVDWRWGERYFAEKLID 368
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+DLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD +G FIR+Y+P+L+ L NK IH+
Sbjct: 369 YDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQKFDPEGKFIRRYVPELAALDNKAIHA 428
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
PW+A K+ G +LG++YP+PI++H+ + L +
Sbjct: 429 PWQA---KVLPGGFLLGRDYPRPIVDHAEQRTRALALFG 464
>gi|222111113|ref|YP_002553377.1| deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY]
gi|221730557|gb|ACM33377.1| Deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY]
Length = 488
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/468 (42%), Positives = 304/468 (64%), Gaps = 24/468 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDS-------DLIIRYAI 55
VYCVF+FD +ILD L ++ DRR+EFI S+ L +L+ + LI+R+
Sbjct: 31 VYCVFVFDTDILDALLTRC---DRRVEFIHASVCALDEDLRALAARSGAPGGGLIVRHGT 87
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
A + I +L L + V+ N DYEP A+ RD+ + L G F YKDQV+ E+ E+L
Sbjct: 88 AVQCIVQLARSLGVREVLANRDYEPAALARDRRVADGLAACGIAFSDYKDQVLLEQGEVL 147
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
N+ G+PYS+F+ Y++ W++K+ + + + YPV+ + ++L + +L DL
Sbjct: 148 NQLGQPYSVFTPYKRTWLQKLDAFQT--KPYPVERHAHHLAVPPA-----GERLPTLADL 200
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF +NL+ L + G+ GA+ LL +F+ + Y + R++P G SYLS+HLRFGT+SIR
Sbjct: 201 GFVATNLADLQLPVGSRGAQQLLQDFLPHMAAYKLARDFPGRKGVSYLSVHLRFGTVSIR 260
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+L L + C G TWLS+L WRDFY MIL+ +P+VV ++F+ EYD + W+
Sbjct: 261 QLASLA----ARQAAQGCEGAQTWLSELAWRDFYFMILWHHPHVVTQAFRPEYDRVQWDD 316
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
A + + WC TGYPL+D+A+ QL +GYMHNRLRMV ASFL K++GI+W+ GE +
Sbjct: 317 ---APEYWQAWCAARTGYPLVDAAMRQLLQTGYMHNRLRMVVASFLTKDLGIDWRRGERF 373
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA LND+DLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FIR+YLP+L+ +
Sbjct: 374 FAQHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVAQSQKFDPDGRFIRRYLPELACV 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+K++H P +L+ G+ LG +YP P+++H+ +++ L R++F+
Sbjct: 434 PDKHLHFPASMKPLELQACGLRLGIDYPLPVVDHASARERTLMRFHFL 481
>gi|456062579|ref|YP_007501549.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
gi|455439876|gb|AGG32814.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
Length = 496
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/478 (44%), Positives = 304/478 (63%), Gaps = 22/478 (4%)
Query: 2 EVYCVFIFDKNILDPLR-----SQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIA 56
+V+ FIFD IL+PL+ S + DRR++FI++ + ++ L+ LI+++
Sbjct: 29 QVWMTFIFDTEILEPLKVDDQASGALTHDRRVDFIWQGLQQIDAQLRKQGGGLIVQFGKP 88
Query: 57 SKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN 116
+ I K+ L ++ V NHDYEP AI RD + L+ +G F ++KDQVIFEK EIL
Sbjct: 89 TTCIPKIAKTLGVNTVYTNHDYEPSAIARDNSVATLLEKLGIDFETFKDQVIFEKKEILT 148
Query: 117 KTGKPYSIFSFYQKKWIEKVKSNK-CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+ +SIF+ Y+ W++ ++ P K + + + + + SL +
Sbjct: 149 NSNTVFSIFTPYKNNWLKTLQEKDIAAYDCTPKKGQF------AAIPSTLESPLPSLESM 202
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF + + + + +G+ G + L +F+ +I Y I R++P+I G SYLS HLRFG +SIR
Sbjct: 203 GFSPTGIETY-LPSGSEGGQSFLEDFLHRIDQYQIGRDFPAIKGVSYLSTHLRFGMLSIR 261
Query: 236 KLVKLIFKFIKKHYK--TDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNIL 292
LV+ + H + +G WLS+LIWRDFY MIL +P + +FK +YDNI
Sbjct: 262 GLVR------EAHRRMLAGSMGATIWLSELIWRDFYFMILANHPRLAEGAAFKPDYDNIE 315
Query: 293 WESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWG 352
WE AKK F WC G TGYPL+D+A+ QLN SGYMHNRLRMV ASFL K++GI+W+WG
Sbjct: 316 WEGGATAKKLFKAWCDGKTGYPLVDAAMHQLNQSGYMHNRLRMVVASFLTKDLGIDWRWG 375
Query: 353 ENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQL 412
E YFA LNDF+L+SNNG WQW++SSGC +QP+FRIFNPI QS+KFD +G FIR+YLPQL
Sbjct: 376 EMYFAKHLNDFELSSNNGGWQWASSSGCDAQPYFRIFNPITQSQKFDPEGKFIRRYLPQL 435
Query: 413 SKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
KLS K IH+PW+A +LE AGI+LG++YP P++ H ++K L RY+ +K + +
Sbjct: 436 DKLSKKSIHAPWEAGHIELEAAGILLGRDYPLPVVNHDEARKKTLVRYSVVKKVTPED 493
>gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
Length = 469
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/459 (44%), Positives = 301/459 (65%), Gaps = 25/459 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V CVF+FD++IL L +Q DRR++FI+ S++EL L SDL++ I
Sbjct: 31 VVCVFVFDRDILKHLPAQ----DRRVDFIWHSLVELKEQLCALGSDLVVVSGRPVDCIPA 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + V + DYEP A +RD + + L G + + KDQVIFE++E+L KPY
Sbjct: 87 LAQEHGASTVWASRDYEPAACLRDAAVAERLSRHGTRLETVKDQVIFEQDEVLTVNSKPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y+ W++K+ +LQ+YP YLN +L ++ + SL DLGF + L
Sbjct: 147 TVFTPYRNAWLKKL--TPFFLQAYPSTRYLN------RLARLAETPLPSLADLGFTDTGL 198
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
LGI+ G +GA + +F ++I++Y R++P+ G SYLS+HLRFGTISIR+L +
Sbjct: 199 GRLGIRAGMAGAAAVFTDFGQRIEHYQQWRDFPAAKGVSYLSVHLRFGTISIRQLAQFA- 257
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
++ G TWLS+LIWR+FYQ +L+ YP+VV +SFK EY + + +D +
Sbjct: 258 ------WQQGSAGATTWLSELIWREFYQQLLWHYPHVVEESFKPEYRQLGFPND---ETL 308
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC G TGYPL+D+A+ QL SGYMHNRLRMVTASFL+K++ ++W+WGE YFA KL D
Sbjct: 309 FAAWCAGRTGYPLVDAAMRQLAYSGYMHNRLRMVTASFLVKDLLVDWRWGERYFAEKLID 368
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+DLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD +G FIR+Y+P+L+ L NK IH+
Sbjct: 369 YDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQKFDPEGKFIRRYVPELAALDNKAIHA 428
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
PW+A K+ G +LG++YP+PI++H+ + L +
Sbjct: 429 PWQA---KVLPGGFLLGRDYPRPIVDHAEQRTQALALFG 464
>gi|330825562|ref|YP_004388865.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
K601]
gi|329310934|gb|AEB85349.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
K601]
Length = 487
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/470 (44%), Positives = 304/470 (64%), Gaps = 24/470 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDS-------DLIIRYAI 55
VYC F+FD ILD L S+ +DRR+EFI S++EL LQ + LI+R+
Sbjct: 31 VYCAFVFDTGILDELPSR---QDRRVEFIHASLLELHQGLQQLAARSGAPGGGLIVRHGP 87
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
A + I +L +L + V+ N DYEPQAI RD+ + + L +G F YKDQV+ +++E+L
Sbjct: 88 ALECIVQLAQELGVQEVLANRDYEPQAIARDQSVAQALHALGIAFSDYKDQVLLDRDEVL 147
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+ G+PYS+F+ Y++ W++++ + L+ YPV Y ++L + + +L+DL
Sbjct: 148 TQQGRPYSVFTPYKRAWLQRLDDFQ--LKPYPVDRYAHHLAPPPA-----DERLPTLSDL 200
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
F +NL L + +G SGA+ LL +F+ ++ Y R+YP G SYLS+HLRFGT+SIR
Sbjct: 201 SFGPTNLRELPLPSGMSGAQRLLQDFVPRMAAYQEARDYPGRKGVSYLSVHLRFGTVSIR 260
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+L L K + C G TWLS+L WRDFY MIL+ +P VV +SFK EYD + W+
Sbjct: 261 QLAALAAKQAAE----GCGGAQTWLSELAWRDFYFMILWHHPQVVTQSFKPEYDRVQWDE 316
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
A + + WC+ TGYPL+D+A+ QL +GYMHNRLRMV ASFL K++GI+W+ GE +
Sbjct: 317 ---APELWQAWCEARTGYPLVDAAMHQLLQTGYMHNRLRMVVASFLTKDLGIDWRRGERF 373
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA LND+DLA+NNG WQW+AS+GC +QP+FRIFNPI QS++FD G FIR+YLP+L +
Sbjct: 374 FAQHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPITQSQRFDPDGTFIRRYLPELVGV 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ +IH P L G+ LG +YP P+++H+ +++ L R++ +
Sbjct: 434 PDAHIHFPAAMKPAALAACGLRLGVDYPVPVVDHARARQRTLMRFSLLPE 483
>gi|330824678|ref|YP_004387981.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
K601]
gi|329310050|gb|AEB84465.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
K601]
Length = 491
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 199/468 (42%), Positives = 300/468 (64%), Gaps = 24/468 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDS-------DLIIRYAI 55
VYC F+FD +ILD L ++ DRR+EFI S++EL L + LI+R+
Sbjct: 35 VYCAFVFDTDILDALPTR---SDRRVEFIHASVLELHQGLAELAARSGAPGGGLIVRHGP 91
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
A + I +L L + V+ N DYEPQAI RD+ + + L+ G F YKDQ + +++E+L
Sbjct: 92 APECIVRLARSLGVQEVLANRDYEPQAIERDRRVARALQAAGIAFSDYKDQALLDRDEVL 151
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+ G+PY +F+ Y++ W++++ + + L YPV S+ +L + +L +L
Sbjct: 152 TRQGRPYGVFTPYRRAWLQRLDAFQ--LTPYPVASHARHLAAPPA-----GECLPTLQEL 204
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF ++NL L + TG GA++LL +F+ ++ Y+ R+YP G SYLS+HLRFGT+SIR
Sbjct: 205 GFARTNLHELPLPTGMRGAQLLLQDFMPRMAAYHEARDYPGRKGVSYLSVHLRFGTVSIR 264
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+L L C G WLS+L WRDFY MIL+ +P V +SFK YD + W+
Sbjct: 265 QLAALAAAQAA----QGCEGAQAWLSELAWRDFYFMILWHHPQVATQSFKPVYDRVQWDD 320
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
A + + WC TGYPL+D+A+ QL+ +GYMHNRLRMV ASFL K++G++W+ GE +
Sbjct: 321 ---APELWQAWCGARTGYPLVDAAMRQLHQTGYMHNRLRMVVASFLTKDLGLDWRRGERH 377
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA LND+DLA+NNG WQW+AS+GC +QP+FRIFNP+ QS++FD QG FIR YLP+L+++
Sbjct: 378 FAAHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQRFDPQGRFIRCYLPELARV 437
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +IH P +L G+ LG +YP P+++H+ +++ L R++F+
Sbjct: 438 PDAHIHFPAAMGPLELAACGLRLGVDYPLPVVDHARARERTLMRFHFL 485
>gi|319762589|ref|YP_004126526.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC]
gi|317117150|gb|ADU99638.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC]
Length = 491
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 200/468 (42%), Positives = 299/468 (63%), Gaps = 24/468 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDS-------DLIIRYAI 55
VYC F+FD +ILD L ++ DRR+EFI S++EL L + LI+R+
Sbjct: 35 VYCAFVFDTDILDALPTR---SDRRVEFIHASVLELHQGLAELAARSGAPGGGLIVRHGP 91
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
A + I +L L + V+ N DYEPQAI RD+ + + L+ G F YKDQ + +++E+L
Sbjct: 92 APECIVRLARSLGVQEVLANRDYEPQAIERDRRVARALQAAGIAFSDYKDQALLDRDEVL 151
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+ G+PY +F+ Y++ W++++ + + L YPV S+ +L + +L +L
Sbjct: 152 TRQGRPYGVFTPYRRAWLQRLDAFQ--LTPYPVASHARHLAAPPA-----GECLPTLQEL 204
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF ++NL L + TG GA+ LL +F+ ++ Y+ R+YP G SYLS+HLRFGT+SIR
Sbjct: 205 GFARTNLHELPLPTGMRGAQQLLQDFMPRMAAYHEARDYPGRKGVSYLSVHLRFGTVSIR 264
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+L L C G WLS+L WRDFY MIL+ +P V +SFK YD + W+
Sbjct: 265 QLAALAAAQAA----QGCEGAQAWLSELAWRDFYFMILWHHPQVATQSFKPVYDRVQWDD 320
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
A + + WC TGYPL+D+A+ QL+ +GYMHNRLRMV ASFL K++G++W+ GE +
Sbjct: 321 ---APELWQAWCGARTGYPLVDAAMRQLHQTGYMHNRLRMVVASFLTKDLGLDWRRGERH 377
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA LND+DLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD QG FIR YLP+L+++
Sbjct: 378 FAAHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQKFDPQGRFIRCYLPELARV 437
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +IH P +L G+ LG +YP P+++H+ +++ L R++F+
Sbjct: 438 PDAHIHFPAAMGPLELAACGLRLGVDYPLPVVDHARARERTLMRFHFL 485
>gi|260220093|emb|CBA27286.1| Deoxyribodipyrimidine photo-lyase [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 534
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 199/428 (46%), Positives = 278/428 (64%), Gaps = 17/428 (3%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ----NYDSDLIIRYAIASK 58
VYCVF++D ILD L Q DRR+EFI +S+ L +LQ + LI + +A
Sbjct: 34 VYCVFVYDTAILDKLPRQ----DRRVEFIQESVTALESSLQALRGHASRTLITLHDVAHS 89
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
I +L +L +AV + DYEP A+ RD ++++L G + KDQVIFE E+L +T
Sbjct: 90 AIPELAKQLQANAVFVARDYEPAAVTRDTAVQQQLLAEGKQLVLVKDQVIFEDREVLTQT 149
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
GKPY +F+ Y + W+ ++ S + P + + + SL DLGF
Sbjct: 150 GKPYGVFTPYHRAWLARIGS-----ELVPGHDVCRGHAVLAAAPDALAKPLPSLADLGFE 204
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+NL +LG+ G++ + +L +F+ ++ Y+ RN+PS+ G SYL +HLRFGT+SIRKLV
Sbjct: 205 ATNLRALGMHGGSAAGEAMLQDFLGRMDRYSEARNFPSVKGPSYLGVHLRFGTVSIRKLV 264
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
L K ++ T G WL++L WRDFY IL +P+V ++FK EYD I WE
Sbjct: 265 NLALKRVR----TGSEGASVWLAELAWRDFYFQILANFPHVATQAFKPEYDAIAWEQGEE 320
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
A+ F WC+G TGYP++D+A+ QLN +GYMHNRLRMV SFL+K++G++W+WGE YFA
Sbjct: 321 AEALFEAWCEGKTGYPIVDAAMAQLNQTGYMHNRLRMVAGSFLVKHLGLDWRWGEKYFAL 380
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
KLNDFDL++NNG WQW ASSGC +QP+FRIFNP+ QS+KFD QG FI++YLPQL+ LS+K
Sbjct: 381 KLNDFDLSANNGGWQWVASSGCDAQPYFRIFNPVTQSEKFDGQGKFIKRYLPQLADLSDK 440
Query: 419 YIHSPWKA 426
IH+PW A
Sbjct: 441 AIHAPWLA 448
>gi|413958752|ref|ZP_11397991.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. SJ98]
gi|413941332|gb|EKS73292.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. SJ98]
Length = 467
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 195/464 (42%), Positives = 297/464 (64%), Gaps = 19/464 (4%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
C F+FD++IL PL + DRR+ FI S++EL L+ LI+R+ +I L
Sbjct: 3 CAFVFDRDILAPLDKK----DRRVPFIHASVVELDRTLREAGGALIVRHGHPVHDIPSLA 58
Query: 65 IKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSI 124
+ +AV +N DYEP A RD+ + ++L FFS+KDQ +F+ ++++ KPY++
Sbjct: 59 RECGANAVFVNRDYEPAAKARDEAVAQKLASHDIAFFSFKDQAVFDHDDVMTGAAKPYTV 118
Query: 125 FSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSS 184
F+ Y++KW+ + + L Y + +L+ L +K + + I SL+ LGF + +
Sbjct: 119 FTPYKRKWLATLTPDA--LAPYASEEHLDAL---AKPPSNVKHAIPSLDALGF--GDAPA 171
Query: 185 LGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
G GA L ++F ++ +Y R++P++ G SYL +HLR GT+SIR L +
Sbjct: 172 PAFPAGTRGAYELFDDFRDRMTDYGRTRDFPALKGPSYLGVHLRHGTMSIRALARSAHDA 231
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV----NKSFKKEYDNILWESDNYAK 300
++ K G TWL +LIWR+FY +L+ +P+V +++FK EYD I WE+ + A
Sbjct: 232 LRHGDK----GAETWLGELIWREFYFSVLHHFPHVGVAGDHRAFKPEYDRIGWETGHAAD 287
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
NF WC G TGYPL+D+A+ Q+N+SGYMHNRLRMV ASFL K++GI+W+ GE YF L
Sbjct: 288 ANFAAWCAGQTGYPLVDAAMRQINASGYMHNRLRMVVASFLTKDLGIDWRRGEAYFEAHL 347
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
NDF+L++NNG WQW+ASSGC +QP+FRIFNP+ QS+KFD G FIR Y+P+++ LS++ I
Sbjct: 348 NDFELSNNNGGWQWAASSGCDAQPYFRIFNPVTQSRKFDSAGKFIRHYVPEIAALSDRDI 407
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H+PW A L+ A I LG +YP+PI++H +++K L RY+ ++
Sbjct: 408 HAPWLAKPDALKAAKISLGADYPQPIVDHEVARKRTLMRYDVVR 451
>gi|377821540|ref|YP_004977911.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. YI23]
gi|357936375|gb|AET89934.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. YI23]
Length = 498
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 293/467 (62%), Gaps = 19/467 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V C F+FD+ IL PL DRR+ FI S +EL L+ LI + +I
Sbjct: 33 VLCAFVFDREILAPLDKN----DRRVPFIHASAVELDRTLREAGGGLIALHGHPLHDIPA 88
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +++AV N DYEP A RD+ + ++L FF++KDQ +F+ ++++ GKPY
Sbjct: 89 LARDCDVNAVFANRDYEPAAKARDEAVGQKLASQDIAFFTFKDQAVFDHDDVMTGAGKPY 148
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y++KW++ + + L+ Y + LN L ++ + I SL LGF S+
Sbjct: 149 TVFTPYKRKWLQTLTPDA--LKPYASEDRLNAL---ARPPATARHAIPSLAALGF--SDA 201
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ G SGA L ++F +++ +Y R++P++ G SYL +HLR GT+SIR L +
Sbjct: 202 HAPAFPAGTSGAFELFDDFRERMSDYGRTRDFPALKGPSYLGVHLRHGTMSIRALARSAH 261
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV----NKSFKKEYDNILWESDNY 298
+ K G TWL +LIWR+FY +L+ +P+V +++F+ EYD I WE+ +
Sbjct: 262 DAQRHGDK----GAETWLGELIWREFYFSVLHHFPHVGLPGDHRAFRPEYDRIGWETGDA 317
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
A NF WC G +GYP++D+A+ Q+N+SGYMHNRLRMV ASFL K++GI+W+ GE YF
Sbjct: 318 ADANFAAWCAGQSGYPIVDAAMRQINASGYMHNRLRMVVASFLTKDLGIDWRRGEAYFEA 377
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
LNDFDL++NNG WQW+ASSGC +QP+FRIFNP+ QSKKFD G FIR Y+P+++ LS++
Sbjct: 378 LLNDFDLSNNNGGWQWAASSGCDAQPYFRIFNPVTQSKKFDAAGTFIRHYVPEIAGLSDR 437
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH+PW A L+ A I LG +YP+P+++H ++ L RY+ ++
Sbjct: 438 DIHAPWLAKPDALKAAKIALGADYPQPLVDHGAARNRTLARYDVVRG 484
>gi|302877366|ref|YP_003845930.1| deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
ES-2]
gi|302580155|gb|ADL54166.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
ES-2]
Length = 473
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/459 (45%), Positives = 298/459 (64%), Gaps = 24/459 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V+CVF+FD ILD L + DRR+EFI+ S+ EL+ LQ + S L I + + I
Sbjct: 33 VHCVFVFDTVILDALSDK---HDRRVEFIWHSLYELNALLQQHGSTLQILHGNPVELIPH 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L + AV N DYEP A+ RD + L I F YKDQVIFE++EIL G PY
Sbjct: 90 LARELEVQAVFCNRDYEPLAVRRDAAVAASLSDI--DFHQYKDQVIFEQSEILTGGGTPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+ Y+ W++K+ + YL++YPV+ Y ++L S+ +L LGF L
Sbjct: 148 SVFTPYKNAWLKKL--DDFYLRAYPVERYFSSLAKSAP------QAFPALALLGFLPGKL 199
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ + TGASGA L NF+ +I Y RN+P++ G SYLS+HLRFGTISIR++
Sbjct: 200 NVQALPTGASGAATLFENFVSRIDAYGEARNFPAVKGVSYLSVHLRFGTISIRRVASFA- 258
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKK 301
Y + G WLS+LIWRDFYQM L+ +P + +FK ++++I + ++ +
Sbjct: 259 ------YYSGGAGGQVWLSELIWRDFYQMQLHHHPQLGQGAAFKAQFNDIRFPNE---EG 309
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+ TGYPLID+A+ QLN SGYMHNRLRMV ASFL+K++ I+W+WGE YFA L
Sbjct: 310 KFAAWCEARTGYPLIDAAMRQLNGSGYMHNRLRMVVASFLVKDLHIDWRWGERYFAQHLI 369
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
DFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FIR+Y+P+L+ +K+IH
Sbjct: 370 DFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDGAGRFIRRYVPELAGCPDKWIH 429
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+PW + + ++ G+++GK YP P+++H++++ L +
Sbjct: 430 APWLMPAAEQQRCGVLVGKTYPLPVVDHAVARITTLALF 468
>gi|373488485|ref|ZP_09579149.1| Deoxyribodipyrimidine photo-lyase [Holophaga foetida DSM 6591]
gi|372005430|gb|EHP06066.1| Deoxyribodipyrimidine photo-lyase [Holophaga foetida DSM 6591]
Length = 464
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/461 (43%), Positives = 294/461 (63%), Gaps = 34/461 (7%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYD--SDLIIRYAIASKE 59
+V+CVF+FD IL+ L S+ EDRR+EFI S+ EL L S L++R+ A +
Sbjct: 31 QVHCVFVFDAPILNALPSK---EDRRVEFILGSVRELDRELAQPSGRSGLLVRHGDAREI 87
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
I +L ++L + V+ DYEP+A+ RD+ + + L+ +G F + +DQVIFE +EIL G
Sbjct: 88 IPRLALELGVREVVCARDYEPEAVRRDETVARALEGLGIAFTALRDQVIFEADEILTGAG 147
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
+ +S+F+ Y+ W+ + ++ L + V+ L L K I L +LGF K
Sbjct: 148 RMFSVFTPYRNAWMRTLGPHR--LAPFSVEG-LERLAP-----KPPGERIPELEELGFRK 199
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
++L+ ++ G GA++ F +KI NY NR++P+I+G S LS+HLRFGTISIR+LV+
Sbjct: 200 TDLA---LRAGTRGARVFWEGFQEKIDNYKSNRDFPAIDGGSRLSVHLRFGTISIRELVR 256
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ G WL++LIWR+FYQ +L+ P V + +F+ YD I WE A
Sbjct: 257 FALE-------RGTEGAQAWLNELIWREFYQQLLWHRPEVESHAFRSGYDLIPWEEGLEA 309
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ F WC+G TGYPL+D+A+ QL S+G+MHNRLRMVTASFL K++GI+W GE +FA
Sbjct: 310 EARFQAWCEGRTGYPLVDAAMRQLLSTGWMHNRLRMVTASFLTKDLGIHWLRGERFFARH 369
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L DFDLA+NNG WQW+AS+GC +QP+FRIFNP+ QS+ FD +G FIR+Y P+L ++S K
Sbjct: 370 LLDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSRNFDPEGEFIRRYCPELEEVSAKQ 429
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
IH+PW + G +YP PI++H+L ++ L+R+
Sbjct: 430 IHAPWA-----------VEGVDYPPPIVDHALERQRTLQRF 459
>gi|372487277|ref|YP_005026842.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
gi|359353830|gb|AEV25001.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
Length = 482
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 190/463 (41%), Positives = 302/463 (65%), Gaps = 20/463 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V+C F+FD +IL+ L + DRR+EFI +S+ EL + LQ L++R+ A+ EI
Sbjct: 31 VWCAFVFDSDILEALPGR---SDRRVEFIRESLAELHVALQAKGGGLMVRHGPAAAEIAA 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L + AV N DYEP+A RD + +L+ G +KDQ +F+ +E+L K G PY
Sbjct: 88 LARQLGVVAVFANRDYEPRAKARDAAVAADLERDGIALHLFKDQAVFDGDEVLTKGGTPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y+ W+ K++ +++ YPV Y +L + SL D+GF ++L
Sbjct: 148 TVFTPYKNCWLGKLED--FHVRPYPVDRYSGHLAPPPD-----GGGVPSLADIGFLPTDL 200
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+G+ G SG +F ++++ Y R++P++ G SYLS++LRFG +SIR+L
Sbjct: 201 ERIGVVPGMSGGAARWQDFRQRLERYAEQRDFPAVKGVSYLSVYLRFGCLSIRQLAG--- 257
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ +++ G TWLS+LIWRDFY M+L +P + + FK E+D +LW+ A
Sbjct: 258 ----EAWRSGGPGAATWLSELIWRDFYFMVLDRFPQLPDGCFKPEFDRVLWDE---APAL 310
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
W +G TGYPL+D+A+ QL +G+MHNRLRMV ASFL K++G++W+ GE +FA+ L D
Sbjct: 311 LAAWREGRTGYPLVDAAMRQLAQTGWMHNRLRMVVASFLTKDLGLDWRLGEGHFADLLLD 370
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
FDL++NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD QG FIR+Y+P+L+ + +K+IH+
Sbjct: 371 FDLSANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPQGRFIRRYVPELAGVPDKHIHA 430
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PW+ + + + AG+I+G++YP P+++H+L+++ L R+ +K
Sbjct: 431 PWRMAPLEQQAAGVIIGRDYPAPVVDHNLARQRTLARFEAVKG 473
>gi|350544206|ref|ZP_08913847.1| Deoxyribodipyrimidine photolyase [Candidatus Burkholderia kirkii
UZHbot1]
gi|350527993|emb|CCD36739.1| Deoxyribodipyrimidine photolyase [Candidatus Burkholderia kirkii
UZHbot1]
Length = 471
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/447 (41%), Positives = 281/447 (62%), Gaps = 16/447 (3%)
Query: 24 EDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAI 83
+DRR+ FI S +E L+ LI R+ + EI L + +AV N DYEP A
Sbjct: 21 KDRRVPFIRTSAVEHR-TLREAGGALIARHGVPVHEIPALARECGANAVFANRDYEPAAK 79
Query: 84 IRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYL 143
RD + K+L G FF+++DQ +F+ +++ KPY++F+ Y++KW+E + L
Sbjct: 80 ARDDAVAKKLASQGVAFFTFRDQAVFDHDDVTTGASKPYTVFTPYKRKWLETLTPEA--L 137
Query: 144 QSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK 203
+ Y + +LN L +K + + SL +LGF +++ + G SGA L + F
Sbjct: 138 RPYASEDHLNAL---AKPQAGGPHAMPSLAELGFPEAHGPAF--PAGTSGAYALFDEFHP 192
Query: 204 KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
++ +Y R++P+ G SYL HLR GTISIR L + + K G WL +L
Sbjct: 193 RMTDYGRTRDFPARKGPSYLGTHLRHGTISIRALARSAHDAQRHGDK----GAEIWLGEL 248
Query: 264 IWRDFYQMILYCYPNVV----NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
IWR+F+ +L+ +P+V +++FK EYD I WE+ + A +F WC G TGYP++D+A
Sbjct: 249 IWREFFFSMLHHFPHVGVAGDHRAFKPEYDRIRWETGDAADASFAAWCAGQTGYPIVDAA 308
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QLN+SGYMHNRLRMV ASFL K++GI+W+ GE YF LNDF+L++NNG WQW+ASSG
Sbjct: 309 MRQLNASGYMHNRLRMVVASFLTKDLGIDWRRGEAYFEALLNDFELSNNNGGWQWAASSG 368
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
C +QP+FRIFNP+ QS+KFD G FIR Y+P+++ LS++ IH+PW A L+ A I LG
Sbjct: 369 CDAQPYFRIFNPVTQSQKFDSAGKFIRHYVPEIAGLSDRDIHAPWLAKPEALKVAKISLG 428
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNI 466
+YPKP+++H+ ++K L RY+ ++ +
Sbjct: 429 VDYPKPVVDHADARKRTLARYDVVRTV 455
>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
Length = 469
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 176/461 (38%), Positives = 277/461 (60%), Gaps = 26/461 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV CVF+FD+ ILD L + DRR++FI +S+ EL LQ + S L+ RY A + +
Sbjct: 31 EVVCVFVFDRAILDSLPA----SDRRVDFIHRSLCELQARLQQHGSTLVCRYGWADEALP 86
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +L V D EP ++ RD + +L+ GC KD + ++E+L +TG P
Sbjct: 87 ALAAELGAQVVFAAQDDEPASVTRDARVAGQLEQAGCILHLVKDHTLRARDELLTRTGTP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+++F+ Y + W+ ++ + +PV YL+ L + + SL +GF +
Sbjct: 147 FTVFTPYARAWLARLAPAD--MAEWPVAPYLDRLC------PLPAQPLPSLASMGFTDTG 198
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L++LG + G++GA+ L F+ ++ Y+ R++P+++ TS LS HLRFGT+S+R+LV+L
Sbjct: 199 LAALGWQAGSTGAQAALAQFLPRLPLYHEERDFPALDATSRLSPHLRFGTLSVRQLVRLA 258
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
+ G WL++L+WRDFY +L+ P + +FK YD + W +
Sbjct: 259 TDAGHE-------GAQAWLNELVWRDFYHQVLWHRPQLAQGHAFKPVYDQLDWPGE---A 308
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+F W +G TGYPL+D+A+ QL +G+MHNRLRM+ ASFL K++ ++W+ GE +FA L
Sbjct: 309 DHFAAWTEGRTGYPLVDAAMRQLRQTGWMHNRLRMICASFLAKDLLLDWRLGEAWFAECL 368
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
DFD A+NNG WQW+AS+GC +QP+FRIFNP+ QS+KFD G FIR ++P+L++L + I
Sbjct: 369 LDFDFAANNGGWQWAASTGCDAQPYFRIFNPVSQSRKFDPDGHFIRHFVPELARLDAEAI 428
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
H+PW A G G +YP P+++H+ ++ L Y
Sbjct: 429 HAPWLARRL---PPGFSPGHDYPLPLVDHARQRERALALYG 466
>gi|393759561|ref|ZP_10348374.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162122|gb|EJC62183.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 514
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/454 (41%), Positives = 277/454 (61%), Gaps = 29/454 (6%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ V CVF+FD ILD L + +D R+ FI S+ L L+ + S+LI + ++I
Sbjct: 72 LPVACVFVFDSTILDSLPA----DDVRVAFILDSLQSLQEQLRQHGSELITVHGDPVQQI 127
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
L LN V N DYEP A+ RD + + L G +KDQVIF ++EIL + +
Sbjct: 128 PLLANHLNAQTVYANEDYEPAALTRDHAVSQSLAAQGRVLKLFKDQVIFARDEILTQQKQ 187
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
PY++F+ Y++ W+ +++ + +Q+Y + + + L +LGF +
Sbjct: 188 PYTVFTPYKRNWLARIQPSD--IQAYDCSQ--------GQWAPLPAQALPCLKELGFHEE 237
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ L G GA+ LL F +I Y+ R++P+ G SYL+ HLRFGT+SIR+ V L
Sbjct: 238 ARTKLLSPAGWQGAQTLLQQFEPRIHAYHERRDFPAKRGVSYLAPHLRFGTLSIRQAVAL 297
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES-DNYA 299
+ +D G TWLS+LIWR+FYQ L+ +P +SFK Y N+ + + D++
Sbjct: 298 A-------WPSDSEGAATWLSELIWREFYQQFLWHHPETAQESFKPAYKNLPFPNRDDW- 349
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
F W G TGYP++D+A+ QLN SGYMHNRLRM++ASFL+K++ I+W+WGE YFA K
Sbjct: 350 ---FQAWKDGQTGYPIVDAAMRQLNQSGYMHNRLRMISASFLVKDLLIDWRWGEQYFAQK 406
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D+D+ASN G WQW+AS+GC +QP+FRIFNPI QS+KFD +G FIR+Y+P+L+ L +
Sbjct: 407 LLDYDMASNVGGWQWAASTGCDAQPYFRIFNPITQSRKFDPEGQFIRRYVPELASLDKQA 466
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSK 453
IH+PW+A L LG++YP PI++H +
Sbjct: 467 IHAPWQAKQLPL---AFRLGQHYPAPIVDHDTQR 497
>gi|118594490|ref|ZP_01551837.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
HTCC2181]
gi|118440268|gb|EAV46895.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
HTCC2181]
Length = 465
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/460 (43%), Positives = 296/460 (64%), Gaps = 22/460 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
VYCVFIFDKNIL+ L+S+ ED+RIEFI++++ E+ +L + SD+ + + I
Sbjct: 25 VYCVFIFDKNILNDLKSK---EDQRIEFIWEALSEMKASLNSLSSDITVIHGDPIHAIPL 81
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ K + +A+ N DYE A RD I + ++ + +KD V+FE+ EIL++ KPY
Sbjct: 82 LLKKYDCEALFFNKDYESYANKRDMRIMEHIQQSSADAYQFKDTVLFEEKEILSQADKPY 141
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++FS Y+ + K+ Y + NN KI ++SL+ LGF K+NL
Sbjct: 142 TVFSPYKNNHLAKL-----YQKGITQYDCENN---KRSFAKIKIEKLLSLDSLGFTKTNL 193
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
S L I TG+SG + LL +F K+I Y + R+YP G SYLS+H RFGTISIR+ +
Sbjct: 194 SKLAIPTGSSGGRSLLLDFEKRIDQYKLKRDYPGKKGVSYLSVHNRFGTISIREQALIA- 252
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAKK 301
I K + G WL++LIWRDFY IL +P++ + KSFK +++ + +E++
Sbjct: 253 --INKQSE----GSLVWLNELIWRDFYFQILSNFPHINDGKSFKPQFNQLRFENN---VT 303
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W G TG+P+ID+A+ QLN +G+MHNRLRM+ ASFL+K++ I+W+WGE+YFA KL
Sbjct: 304 FFEAWKNGRTGFPIIDAAMHQLNKTGFMHNRLRMIVASFLVKDLLIDWRWGESYFAEKLI 363
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
DFD ++NNG WQW+AS+GC +QP+FRIFNP++QS+KFD +G+FI+KYLPQL+ LS K IH
Sbjct: 364 DFDFSANNGGWQWAASTGCDAQPWFRIFNPLLQSEKFDPEGLFIKKYLPQLTPLSAKEIH 423
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
P + + LG++YP PI++H++ ++ L Y
Sbjct: 424 RPHFFYEKDPDTFKVKLGEDYPFPIIDHAIQRQKALSMYQ 463
>gi|451981013|ref|ZP_21929393.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
gi|451761776|emb|CCQ90640.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
Length = 483
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/464 (42%), Positives = 280/464 (60%), Gaps = 35/464 (7%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV VF+FD NIL L + +DRR+ FI S+ E+ L +DL++ + +I
Sbjct: 32 EVIVVFVFDTNILRKLEDK---DDRRVNFIHHSLKEMQARLVKKGADLLVCHGDPVLDIP 88
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L +L +DAV N DY+P A RD++++++LK+ F SY DQV+FE +I + G+P
Sbjct: 89 RLAQELKVDAVFTNRDYDPYARKRDRIVEQKLKIWDVTFHSYMDQVVFEYPDIATRQGEP 148
Query: 122 YSIFSFYQKKWI-----EKVKSNKCYLQSY-PVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+ +F+ Y+ W+ E V K L+ PVK + I DL
Sbjct: 149 FKVFTPYKNAWLGALRPEHVAEEKPNLKRLAPVKVF---------------KEWIEPWDL 193
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSI-NGTSYLSIHLRFGTISI 234
G + L ++ G GA+ F K I Y+ +R++P++ +GTS LS+HLRFGTISI
Sbjct: 194 GSLGFKENELWVQPGEEGARAAWRKFQKYIHRYHKDRDFPALKHGTSGLSVHLRFGTISI 253
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
R+LV+ + G TWLS+LIWRDFYQ IL Y VV +F+ EYD+I W
Sbjct: 254 RELVRNAMGRKNE-------GARTWLSELIWRDFYQTILDRYSYVVRGAFRPEYDSIRWP 306
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
+ +F WC G TGYPLID+A+ +G+MHNRLRMV ASFL+K++ ++W+ GE
Sbjct: 307 G---KESHFKKWCAGETGYPLIDAAMRHFARTGWMHNRLRMVVASFLVKDLLVDWRKGEA 363
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
+FA L DF+LASNNG WQW AS+GC +QP+FRIFNP+ QSK FD +G FIR+ +P+L+
Sbjct: 364 WFARNLIDFELASNNGGWQWCASTGCDAQPWFRIFNPVTQSKNFDPEGRFIRENVPELAA 423
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILK 458
SN +IH P A + E+ G LGK+YP PI++H+L ++ LK
Sbjct: 424 FSNTHIHWPHDAPDSEKERTGCRLGKDYPDPIVDHALQREKALK 467
>gi|338210905|ref|YP_004654954.1| deoxyribodipyrimidine photo-lyase [Runella slithyformis DSM 19594]
gi|336304720|gb|AEI47822.1| Deoxyribodipyrimidine photo-lyase [Runella slithyformis DSM 19594]
Length = 436
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 192/460 (41%), Positives = 275/460 (59%), Gaps = 62/460 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD ILD L + +DRR+EFI ++I EL L S LI+RY + ++
Sbjct: 32 VLPVFIFDTEILDKLEDK---KDRRVEFIHEAIRELHTQLTQLGSTLIVRYGKPADIWQQ 88
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + +I V NHDYEP A++RDK I L G F+++KDQ IFEK+EIL+ G PY
Sbjct: 89 LSEEYDIAEVHTNHDYEPYALVRDKAIGAFLNAGGTAFYTHKDQCIFEKSEILSGAGTPY 148
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y +KW EKV N+ YL+SYP ++Y + L I SL +GF
Sbjct: 149 TVFTPYSRKWKEKV--NEFYLRSYPTETYFEAFFKTKPL------EIPSLQRMGFEA--- 197
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
TG + N + I++Y R+ PSI GTS LS+HLRFGTISIR+L +
Sbjct: 198 ------TGQPFPSKTVRNEL--IEHYKERRDIPSIPGTSRLSVHLRFGTISIRELAR--- 246
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKK 301
K + T+L++LIWRDFY IL+ +P+V K+F+ EYD I W D +K
Sbjct: 247 -------KAQTLNE-TFLNELIWRDFYMQILWHFPHVGQGKAFRPEYDKIEWRHD---EK 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYP++D+ + +LN++G+MHNR+RMV ASFL K++ I+W+WGE YFA KL
Sbjct: 296 QFQQWCEGRTGYPIVDAGMRELNATGFMHNRVRMVVASFLTKHLLIDWRWGEAYFAQKLL 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+DL++NNG WQW++ SG + P+FRIFNP Q++KFD Q I+I+K++P+++
Sbjct: 356 DYDLSANNGGWQWASGSGTDAAPYFRIFNPASQTQKFDPQHIYIKKWVPEINSF------ 409
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
YP+PI++H+ +++ LK Y
Sbjct: 410 -------------------EYPQPIVDHAFARERCLKVYQ 430
>gi|375148275|ref|YP_005010716.1| deoxyribodipyrimidine photo-lyase [Niastella koreensis GR20-10]
gi|361062321|gb|AEW01313.1| Deoxyribodipyrimidine photo-lyase [Niastella koreensis GR20-10]
Length = 435
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 193/459 (42%), Positives = 271/459 (59%), Gaps = 62/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD NILD L + D R+EFI ++ + L+ S L + + KK
Sbjct: 31 VLPIFIFDTNILDQLPN---TSDARVEFIHDALTGMQEQLKELGSTLDVLHDTPLNAFKK 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
LV + I+AV NHDYEP A RD I + L+ G F +YKDQVIFEKNE+ GKPY
Sbjct: 88 LVKQYTIEAVYTNHDYEPYAQERDNRIARFLEEHGIAFHTYKDQVIFEKNEVTKDDGKPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y KKW KVK N+ YL+SYP K Y + H+ I SL +GF K
Sbjct: 148 TVFTPYSKKW--KVKLNEFYLKSYPTKKYFRHF------HQHAPKRIPSLQAIGFEK--- 196
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
TG +N + IK+Y+ R++P + GTS+L +HLRFGTISIR+L +
Sbjct: 197 ------TGREFPTDSPDNAV--IKHYDKKRDFPGVKGTSHLGVHLRFGTISIRQLAQKAS 248
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKK 301
K + T+L++LIWRDF+QMIL+ +P+V K+FK EYD I W ++ +
Sbjct: 249 KLNE-----------TFLNELIWRDFFQMILWHFPHVGQGKAFKAEYDLIEWRNN---EA 294
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYP++D+ + +LN++G+MHNR+RM+TASFL K++ I+W+WGE YFA KL
Sbjct: 295 EFTRWCEGNTGYPIVDAGMRELNATGFMHNRVRMITASFLAKHLLIDWRWGEAYFAEKLL 354
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
DF+L+SNNGNWQW+A SGC + P+FRIFNP Q+KKFD +I+K++P+ + +
Sbjct: 355 DFELSSNNGNWQWAAGSGCDAAPYFRIFNPYTQTKKFDPDFAYIKKWVPEFEEFT----- 409
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP I+EH ++ L+ Y
Sbjct: 410 --------------------YPGAIVEHEKARVRCLETY 428
>gi|376316713|emb|CCG00097.1| deoxyribodipyrimidine photo-lyase type I [uncultured Flavobacteriia
bacterium]
Length = 433
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 194/465 (41%), Positives = 274/465 (58%), Gaps = 64/465 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD ILD L + D+RI FI +SI L Q + DL + + + I K
Sbjct: 30 VQAVFIFDITILDKL----LKNDQRIIFIHRSIQNLKKEYQRFGGDLKVYHGDPKELIPK 85
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ +L +D+V N DYEP A+ RDK I +LK + F KD VIFEK+EI G PY
Sbjct: 86 IAKELKVDSVYTNRDYEPYALERDKFIFDKLKTLSIDFIGAKDNVIFEKSEITKADGLPY 145
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+I++ Y +KW EK+ ++ YL SYP N +S K+ K +I+L ++GF L
Sbjct: 146 TIYTPYSRKWKEKM--SEFYLSSYP------NGEYSKKIAKSTREILITLKEMGFDDKEL 197
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSI-NGTSYLSIHLRFGTISIRKLVKL 240
+++ KK + Y NRNYP+I GTS+L +HLRFGTISIR+L +
Sbjct: 198 VPFPS-----------DDYPKKWMAKYGENRNYPAIEGGTSHLGVHLRFGTISIRQLAR- 245
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
K +TD T+L++LIWRDFYQ I+Y +P+ V SFKK+YD I WE++
Sbjct: 246 ------KAEQTDP----TFLNELIWRDFYQAIIYHFPHSVKGSFKKQYDAIEWENNEV-- 293
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F +W +G TGYPL+D+ + +LN +GYMHNR+RMV ASFL+K++ I+W+WGE YFA KL
Sbjct: 294 -EFQSWREGKTGYPLVDAGMRELNETGYMHNRVRMVVASFLVKHLLIDWRWGETYFAEKL 352
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
DFDLASN G WQW+A SGC + P+FR+FNP Q +KFD + ++++K++P+
Sbjct: 353 LDFDLASNVGGWQWAAGSGCDAAPYFRVFNPTAQLEKFDKKLVYVKKWVPEFGT------ 406
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
YP+PI+EH ++++ +LKRY N
Sbjct: 407 -------------------DEYPEPIVEHKMARERVLKRYKLALN 432
>gi|325103845|ref|YP_004273499.1| deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
gi|324972693|gb|ADY51677.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
Length = 448
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 185/461 (40%), Positives = 274/461 (59%), Gaps = 67/461 (14%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL+ L ++ DRR++FI + + ++ L +S L++ Y +
Sbjct: 46 VLPLFIFDTTILNLLPNKF---DRRVDFIHQVLSDMKKELDAINSSLLVEYGDPIDVFSE 102
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + I A+ N DYEP AI RD+ +KK ++ G F ++KDQ IFE++EI+ G PY
Sbjct: 103 LIDRFTIKAIYTNRDYEPTAIARDESVKKLVESKGIAFKTFKDQCIFEQSEIVKDDGSPY 162
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
SIF+ Y +KW K K N YL+SYP K Y ++ L LGF K++
Sbjct: 163 SIFTPYSRKW--KSKLNDFYLKSYPCKKYYHHFYQGDDF------KFPDLESLGFSKTD- 213
Query: 183 SSLGIKTGASGAKILLNNFI---KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
I+ N F+ + +++Y+ R++P++ GTS S+HLRFGTISIRKL +
Sbjct: 214 -------------IVYNKFVLSREIVRHYDKTRDFPALKGTSRASMHLRFGTISIRKLAR 260
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ + T+L++LIWRDFY MILY YP +V SFK +YD I W ++
Sbjct: 261 YALDYNE-----------TYLNELIWRDFYMMILYHYPKIVRHSFKADYDKIPWLNN--- 306
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+K+F WC+G TGYP++D+ + +LN++G+MHNR+RM+ ASFL K++ I+W+WGE YFA K
Sbjct: 307 EKDFKAWCEGKTGYPIVDAGMRELNTTGFMHNRVRMIVASFLTKHLLIDWRWGEAYFAEK 366
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L+D+DL++NNG WQW+ASSGC + P+FRIFNP Q+KKFD +IRK++P+L L
Sbjct: 367 LDDYDLSANNGGWQWAASSGCDAVPYFRIFNPEEQTKKFDPNRAYIRKWIPELDSL---- 422
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+YPKPI+EH +++ L Y
Sbjct: 423 ---------------------DYPKPIVEHKFARERALNVY 442
>gi|415909085|ref|ZP_11553084.1| Deoxyribodipyrimidine photo-lyase [Herbaspirillum frisingense
GSF30]
gi|407762657|gb|EKF71465.1| Deoxyribodipyrimidine photo-lyase [Herbaspirillum frisingense
GSF30]
Length = 275
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 204/273 (74%), Gaps = 2/273 (0%)
Query: 192 SGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKT 251
SG + LL++F+ +I Y R++P++ G SYLS+HLRFGT+SIR L + + + H
Sbjct: 2 SGGQALLDDFLGRIGAYGTARDFPAVKGPSYLSVHLRFGTVSIRTLARAAMQAM--HAGQ 59
Query: 252 DCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
G WLS+L WRDFY MIL+ +P V K+FK EYD I WE +A++ F WC+G T
Sbjct: 60 GAAGAAVWLSELTWRDFYFMILHHHPRVTEKAFKPEYDAIRWEQGPHAEELFAAWCEGRT 119
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
GYPL+D+A+ Q+N +GYMHNRLRMV ASFL K++GI+W+WGE YFA LNDFDL++NNG
Sbjct: 120 GYPLVDAAMAQINQTGYMHNRLRMVVASFLTKDLGIDWRWGERYFAIHLNDFDLSANNGG 179
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL 431
WQW++SSGC +QP+FRIFNP+ QS+KFD G FIR+YLPQL+KLS+K IH+PW A+ +
Sbjct: 180 WQWASSSGCDAQPYFRIFNPVTQSEKFDPDGKFIRRYLPQLAKLSDKRIHAPWTATPDER 239
Query: 432 EKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
AG+ LG+NYP+PI++H+ +++ L+RY +K
Sbjct: 240 MDAGVTLGQNYPRPIVDHAQARERTLERYAVVK 272
>gi|254468959|ref|ZP_05082365.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
gi|207087769|gb|EDZ65052.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
Length = 429
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 178/446 (39%), Positives = 283/446 (63%), Gaps = 28/446 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAII 84
D+R++FI++ + ++ L+ Y SD+ I + EI KL +N +A+ +N DYE +
Sbjct: 9 DQRVDFIYQVLQDIKQTLKKYGSDIWILFGDPVHEIPKLAESINANAIFVNRDYEKYGVN 68
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQ 144
RD ++K+L + F S+KDQV+FE +EI+ K YS+FS Y+ +EK+ + +
Sbjct: 69 RDNDVQKKLSELNKTFQSFKDQVLFEADEIVTKNNTHYSVFSPYRNNHLEKLLISGSGVS 128
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK 204
SY L+++ K + +++L+D+GF SN+SS I T + +N F +
Sbjct: 129 SYK----LDDIT----FEKFNIDKMLTLDDIGFNSSNISSFQIATTHQDIQKQINEFKDR 180
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+++Y+ RN+P+I G SYLS+H RFGTISIR++ + + +Y T G +WL++LI
Sbjct: 181 LEHYDQTRNFPAIKGVSYLSVHNRFGTISIREMANICLQ----NYATS--GSKSWLNELI 234
Query: 265 WRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WRDFY I+ + +V + SFK +YDN+ +E++ + F +W +G TG+P++D+A+ QL
Sbjct: 235 WRDFYFQIIVNFSHVQDGHSFKLQYDNLQYENN---ESFFESWKQGMTGFPIVDAAMRQL 291
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
N++GYMHNRLRM+ ASFL K++ I+W+WGE YF KL D+D ++NNG WQW+AS GC +Q
Sbjct: 292 NTTGYMHNRLRMIVASFLTKDLLIDWRWGEEYFKEKLIDYDFSANNGGWQWAASVGCDAQ 351
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYP 443
P+FRIFNP++QS+KFD G FI+KY+P+LS+ K IH P K+YP
Sbjct: 352 PWFRIFNPLLQSQKFDSDGKFIKKYVPELSEFDKKNIHEP----------HAKFTPKDYP 401
Query: 444 KPILEHSLSKKNILKRYNFIKNILNR 469
KPI++H+ + LK + + N++ +
Sbjct: 402 KPIIDHATQRPKALKMFEHVNNVVKK 427
>gi|387792261|ref|YP_006257326.1| deoxyribodipyrimidine photolyase [Solitalea canadensis DSM 3403]
gi|379655094|gb|AFD08150.1| deoxyribodipyrimidine photolyase [Solitalea canadensis DSM 3403]
Length = 434
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 181/458 (39%), Positives = 274/458 (59%), Gaps = 61/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL+ L + D R+ FI + L+ L S L++++ S +
Sbjct: 32 VLLLFIFDTTILNQLEDKN---DARVTFIHDQLCALNDELVKLGSSLLVKHGTPSAIWTE 88
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + I V NHDYEP A RD+ IK+ L+ G +F ++KDQ IFEK E+L G PY
Sbjct: 89 LIQEYPIKTVYANHDYEPYATQRDQSIKELLQQSGIEFITFKDQAIFEKKEVLKNDGSPY 148
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y+ +W++ +K YL+ YP + YL L ++ + +L +GF ++ +
Sbjct: 149 TVFTPYKNRWMQHLKD--FYLKPYPSERYLQFLYKTTAF------KLPTLKAIGFNRATI 200
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
F + ++NY +R++P+INGTS +SIHLRFGT+SIR+L +
Sbjct: 201 D------------FPKKEFERILENYTQHRDFPAINGTSRISIHLRFGTVSIRRLAR--- 245
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
K Y+ + + WL++LIWRDFY MIL+ +P VV+K+FK YD+I W ++ ++
Sbjct: 246 ----KAYEANSLA---WLNELIWRDFYFMILWHFPYVVSKAFKPAYDHIQWRNN---EEE 295
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYP++D+ + QLN++G+MHNR+RM+ ASFL K++ I+W+WGE YFA KL D
Sbjct: 296 FRRWCEGKTGYPIVDAGMRQLNTTGFMHNRVRMIVASFLTKHLLIDWRWGEAYFAKKLLD 355
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
F+L+SNNG WQW+ASSGC + P+FRIFNP Q+KKFD Q +I+K++P+ +L
Sbjct: 356 FELSSNNGGWQWAASSGCDAAPYFRIFNPDEQTKKFDPQLEYIKKWVPEFREL------- 408
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
NYP PI+EH +++ L Y
Sbjct: 409 ------------------NYPSPIIEHKFARERCLNVY 428
>gi|408675634|ref|YP_006875382.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
gi|387857258|gb|AFK05355.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
Length = 437
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 186/465 (40%), Positives = 283/465 (60%), Gaps = 74/465 (15%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD NIL+ L ++ +D+R+EFI ++ EL +L S ++I+ + K
Sbjct: 33 VLPIFIFDTNILNKLENK---QDQRVEFIHHALSELQRSLSKLQSSILIKKGEPIEIWKL 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ + I V NHDYE AI RDK + + L G F+++KDQ IFEKNE+L+ +G PY
Sbjct: 90 ISEEYEIAEVYTNHDYEKYAIERDKQVGELLNSKGIAFYTFKDQTIFEKNEVLSGSGTPY 149
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y +KW + + N+ YL+SYP + Y N+ + S LH +L ++GF +S +
Sbjct: 150 TVFTPYSRKWKDTL--NEFYLKSYPNEKYFNHFLGSEILH------FPTLEEIGFKESGM 201
Query: 183 SSLGIKTGASGAKILLNNFIKK------IKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
NF KK I Y+ R+ PSI GTS LS+HLRFGT+SIR+
Sbjct: 202 -----------------NFPKKELREELISKYDQIRDIPSIAGTSRLSVHLRFGTVSIRE 244
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWES 295
L + +K WL++LIWRDFY IL+ +P++ + +SF+KEYDNI+W +
Sbjct: 245 LARKAKVLNEK-----------WLNELIWRDFYMNILFHFPHINDGQSFRKEYDNIVWRN 293
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ + F WC G TGYP++D+ + +LN++G+MHNR+RM+TASFLIK++ I+W+WGE Y
Sbjct: 294 N---EAEFKKWCAGKTGYPIVDAGMRELNTTGFMHNRVRMITASFLIKHLLIDWRWGEAY 350
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA KL DFD ++NNG WQW++SSGC + P+FRIFNP Q++KFD + +I+K++P+L+
Sbjct: 351 FAQKLLDFDFSANNGGWQWASSSGCDAAPYFRIFNPTSQTQKFDPELKYIKKWIPELNSF 410
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+YP+PI+EH+ +++ +LK Y
Sbjct: 411 -------------------------DYPRPIVEHTFARERVLKAY 430
>gi|349573536|ref|ZP_08885514.1| deoxyribodipyrimidine photolyase [Neisseria shayeganii 871]
gi|348014842|gb|EGY53708.1| deoxyribodipyrimidine photolyase [Neisseria shayeganii 871]
Length = 504
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 170/455 (37%), Positives = 249/455 (54%), Gaps = 24/455 (5%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF+FD+ ILDPL +DRR+ FI + + +L+ L L + + + + +L
Sbjct: 60 VFVFDRRILDPLPP----DDRRLTFICQCLDDLAAQLAELGMPLHTVHGLPEEVLPELAA 115
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
+ V+ DYEP AI RD + L C+ S DQV+ K+ ++NK G+PY++F
Sbjct: 116 RCGAAEVVCAEDYEPAAIDRDNRVGARLMAQNCRLLSVCDQVLLPKSTVMNKQGRPYTVF 175
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ Y+K W+ Q + + + L H + DLGF S L
Sbjct: 176 TPYKKAWLALYADIYAGWQPVDIHADVAALQRGLPEHLRQAAAPLRPADLGFADSVLIQA 235
Query: 186 GIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
G G A+ F+ ++ +Y + R++P+ GTS LS HLRFGT+S+R+L
Sbjct: 236 G---GERAAQAAWQRFLPRLGDYAVLRDFPARKGTSGLSPHLRFGTLSVRRLAAAA---- 288
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN 305
Y G WLS+LIWR+F+Q LY +P + F+ EY + WE+ +
Sbjct: 289 ---YADGSEGASVWLSELIWREFFQQFLYHHPEAAEQGFRPEYRALAWENR---ADDIEA 342
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W G TGYPLID+A+ L SG MHNRLRMV ASF K++ +W+ GE +FA +L DFDL
Sbjct: 343 WQAGQTGYPLIDAAMRHLRRSGQMHNRLRMVCASFFCKDLLCDWRIGEAWFARQLLDFDL 402
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
A+NNG WQW+A +GC +QP+FR FNP+ QS+KFD QG FIR+++P+L+ L + IH+PW
Sbjct: 403 AANNGGWQWAAGTGCDAQPYFRHFNPLTQSQKFDPQGQFIRRHVPELAHLDARSIHAPWL 462
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
A I YP PI++H+ ++ L Y
Sbjct: 463 -------WADNIDTHGYPPPIVQHARQRERALALY 490
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 166/460 (36%), Positives = 258/460 (56%), Gaps = 24/460 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD IL R +F+ S+ L L++ L++R +
Sbjct: 29 VIPVFIFDDAIL----GGRFASPARTQFLLDSLTALDGELRSLGLHLVLRRGEPLTTLMA 84
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + V N DY P A+ RD IK+EL+ G + SYKD VIFE NE++ G+PY
Sbjct: 85 LLRESGAHGVTWNRDYTPYAVQRDSTIKRELRAAGYRAESYKDAVIFEMNEVVTAAGQPY 144
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y K+W +++S +Q P + + ++ + +LNDL +
Sbjct: 145 TVYTPYAKRWRARLESEPVRVQGVP---------ELTAIPLPASDPLPALNDL-LPTAPT 194
Query: 183 SSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
S TG + A+ L +FI I NY R+ +I GTS LS +LRFG +S R+ V
Sbjct: 195 SVPRFATGETAARAALEHFIHNAIANYATARDLVAIAGTSRLSPYLRFGVLSPRQCV--- 251
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ G +W+ +LIWR+FY +LY +P+ + SFK YD I+W +D
Sbjct: 252 ---VAARAAPSGPGPESWIGELIWREFYIQVLYHFPHALRGSFKPVYDRIVWPND---PA 305
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W +G TGYP++D+A+ QL G+MHNR RM+ ASFL K++ I+W+WGE +F + L
Sbjct: 306 LFAAWQQGRTGYPIVDAAMRQLQQEGWMHNRARMIVASFLTKDLLIDWRWGERHFMHLLI 365
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D D A+NNG WQW+A +G +QP+FRIFNP+ Q +KFD G ++R+Y+P+L+ + +YIH
Sbjct: 366 DGDPAANNGGWQWAAGTGTDAQPYFRIFNPVSQGQKFDPDGAYVRRYVPELAGVPTRYIH 425
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
P K + +AG+ +G++Y P+++H+ + L+ Y
Sbjct: 426 EPHKMPPSEQVRAGVQIGRDYSAPVVDHATQRLRALELYR 465
>gi|149279055|ref|ZP_01885189.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
gi|149230334|gb|EDM35719.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
Length = 433
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 179/456 (39%), Positives = 266/456 (58%), Gaps = 62/456 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD NIL S+ ++D R+ FI+ +I EL+ L +DS +++++ K +
Sbjct: 32 VLLLFIFDTNIL----SKLPVKDARVTFIYNTIKELNEQLAQHDSSIVVKHGSPEKAWTE 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + + +V NHDYEP A RD + + L+ F +YKDQVIFEK+EI+ GKPY
Sbjct: 88 LMEEYQVKSVFTNHDYEPYAAERDDSLAEFLRSEHISFHTYKDQVIFEKDEIVKADGKPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y K+W+ K+ + Y++ YP+K YL +L+ KI +I SL+D+GF
Sbjct: 148 TVFTPYYKQWLRKL--DDFYIKPYPIKKYLKHLL------KIKRQHIPSLSDMGF----- 194
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
AS K +F +K+ Y R++P + T+++ +HLRFGT+SIR
Sbjct: 195 -------EASAQKFPSEDFSRKLDAYEKLRDFPGADATTHIGMHLRFGTVSIRHAAAQAK 247
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ WLS+L WRDFY MIL+ +P+ VN +FK Y+NI W ++ +
Sbjct: 248 TQQAE----------KWLSELAWRDFYMMILWHFPHTVNSAFKPAYNNIKWRNN---EDE 294
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYPL+D+ + QLN++GYMHNR+RMV ASFL K++ I+WKWGE YFA KL D
Sbjct: 295 FEAWCQGNTGYPLVDAGMRQLNATGYMHNRVRMVVASFLSKHLLIDWKWGETYFAEKLLD 354
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+++ASN G WQW+ G + P+FR+FNP +Q KKFD +I K+LP+ K H
Sbjct: 355 YEMASNVGGWQWACGCGNDAAPYFRVFNPELQMKKFDPDFKYIDKWLPEYKKQK----HV 410
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILK 458
P PI+EH+ +++ ILK
Sbjct: 411 P---------------------PIVEHAFARERILK 425
>gi|373953836|ref|ZP_09613796.1| DNA photolyase FAD-binding [Mucilaginibacter paludis DSM 18603]
gi|373890436|gb|EHQ26333.1| DNA photolyase FAD-binding [Mucilaginibacter paludis DSM 18603]
Length = 437
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 176/461 (38%), Positives = 272/461 (59%), Gaps = 69/461 (14%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINL-QNYDSDLIIRYAIASKEIK 61
V +FIFD IL+ L + ED R+ FI+++I L+ L + S ++I+Y +
Sbjct: 32 VLPLFIFDTEILNQLEDR---EDARVTFIYQTIEALNNELREQQSSSILIKYNSTGQAWN 88
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+++ + +I AV NHDYEP A RD +K+ +F++YKDQVIFEK E++ KP
Sbjct: 89 EVLAEYDIAAVYTNHDYEPYARHRDAELKELFTQKNIEFYTYKDQVIFEKGEVVKDDQKP 148
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC--K 179
Y++F+ Y++KW +K+K YL+ YP + YL+N+ +S + +L +GF K
Sbjct: 149 YTVFTPYKRKWYDKLKP--FYLKPYPTRKYLDNISKTSPF------QLPTLKSMGFAESK 200
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
++ KT +G Y+ R++P+I GTS++ +HLRFGT+SIR+L
Sbjct: 201 THFPDKQYKTIIAG--------------YHEQRDFPAIKGTSHIGLHLRFGTVSIRQLA- 245
Query: 240 LIFKFIKKHYKTDCIGYF--TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
TD G TWL++LIWR+FY MILY +P + +FK EYD I W ++
Sbjct: 246 -----------TDAYGAEEKTWLNELIWREFYMMILYHFPQTADHAFKPEYDRIRWRNN- 293
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ F WC+G TGYPL+D+ + +LN++GYMHNR+RMV ASFL K++ I+W+WGE YFA
Sbjct: 294 --ETEFKAWCEGKTGYPLVDAGMRELNATGYMHNRVRMVVASFLSKHLLIDWRWGERYFA 351
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D+++ASN G WQW+A SG + P+FR+FNP +Q KKFD + +++K++P+ + S
Sbjct: 352 RKLLDYEMASNVGGWQWAAGSGTDAAPYFRVFNPELQLKKFDPKLQYVKKWVPEYADFS- 410
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILK 458
YP+PI++H+ +++ LK
Sbjct: 411 -----------------------KYPEPIVDHAFARERCLK 428
>gi|256425909|ref|YP_003126562.1| deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
gi|256040817|gb|ACU64361.1| Deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
Length = 434
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/459 (39%), Positives = 266/459 (57%), Gaps = 63/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD NIL+ L + DRR+ FI + +L L S L + Y + +
Sbjct: 32 VVPVFVFDTNILNDLDDK---HDRRVTFIHDILEDLQEKLSKLGSTLDVFYGTPQQAFEH 88
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ ++ V N DYEP A+ RD I K LK F YKD VIF+ +E+L G+PY
Sbjct: 89 YTREYDVQEVFTNIDYEPYAVKRDSDIAKILKAKNIHFHLYKDHVIFDHSEVLKDNGQPY 148
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y KKW K YL+ YPV+ Y N + K KI +L
Sbjct: 149 TVFTPYSKKW--KSLLTDFYLKPYPVEKYFRNF-YKQKAKKI---------------PSL 190
Query: 183 SSLGIKTGASG-AKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+LG + G G + + + I +KNY+ R+ P I GTS+L +HLRFGTISIR L +
Sbjct: 191 RALGFQAGFRGFPPVNVKDNI--LKNYDKTRDIPGIEGTSHLGVHLRFGTISIRDLAE-- 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + + T+L +LIWRDF+QMIL+ +P+VV +SF++EYDNI W ++ +K
Sbjct: 247 --------RANTLNE-TFLGELIWRDFFQMILWHFPHVVTQSFRREYDNIQWRNN---EK 294
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC G TGYP++D+ + +LN++G+MHNR+RM+TASFL K++ I+W+WGE YFA KL
Sbjct: 295 EFQRWCDGETGYPIVDAGMRELNTTGFMHNRVRMITASFLTKHLLIDWRWGEAYFAKKLL 354
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+DLA+NNGNWQW+A GC + P+FR+FNP +Q+++FD +IRK++P+ +L+
Sbjct: 355 DYDLAANNGNWQWAAGCGCDAAPYFRVFNPTLQTQRFDPDFEYIRKWVPEFEELT----- 409
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
Y KP++ H ++K +L+ Y
Sbjct: 410 --------------------YVKPMVVHEQARKRVLEVY 428
>gi|375014151|ref|YP_004991139.1| deoxyribodipyrimidine photolyase [Owenweeksia hongkongensis DSM
17368]
gi|359350075|gb|AEV34494.1| deoxyribodipyrimidine photolyase [Owenweeksia hongkongensis DSM
17368]
Length = 435
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 187/462 (40%), Positives = 280/462 (60%), Gaps = 64/462 (13%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN-YDSDLIIRYAIASKE 59
++V VFIFD +ILD L + +D R+ FI++ + + L+ + + L++++ K
Sbjct: 31 LKVLPVFIFDTDILDELDDK---KDARVHFIWQEVKSIKKTLEEKHGTSLLVKHGSPLKI 87
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
K LV + + V N DYEP A RDK + + LK F +KDQVIF+K+E++ + G
Sbjct: 88 FKDLVSEFPVAEVFTNRDYEPSAKERDKAVYEFLKSKDIVFKGFKDQVIFDKSEVMKEDG 147
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
PY +F+ Y KK+ ++K YL+SYPVK Y++N +K + ISL+DL F K
Sbjct: 148 TPYEVFTPYMKKYKSQLKP--FYLKSYPVKKYISNF------YKCEPFDNISLSDLSFEK 199
Query: 180 SNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
SN+ + NF K+ I++Y+ NR++P+ GT+ LS+HLRFGTISIRKL
Sbjct: 200 SNV------------EFPDRNFDKETIRSYHENRDFPAKKGTTRLSLHLRFGTISIRKLA 247
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+L K K + ++LIWRDFYQMILY +P VN++FKK+YD I WE++
Sbjct: 248 RLARKENDKFF-----------NELIWRDFYQMILYHFPKSVNEAFKKKYDAIKWENN-- 294
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+++F WC+G TGYPL+D+ + +LN + +MHNR+RMV ASFL K++ I+W+WGE YFA
Sbjct: 295 -EEHFKKWCEGKTGYPLVDAGMRELNETDFMHNRVRMVVASFLTKHLLIDWRWGEAYFAV 353
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
KL D+D ASN G WQW+A G + P+FR+FNP +Q KKFD + +++K++P+ S
Sbjct: 354 KLLDYDQASNIGGWQWAAGCGVDAAPYFRVFNPELQLKKFDPENEYVKKWVPEWS----- 408
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+P YP+PI+EH +++ L RY
Sbjct: 409 ---TP-----------------EYPEPIVEHKFARERALSRY 430
>gi|390945121|ref|YP_006408882.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
gi|390418549|gb|AFL86127.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
Length = 433
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 183/458 (39%), Positives = 272/458 (59%), Gaps = 61/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFDKNILD L + +DRR++FI+ I +S L++++S ++++Y + +
Sbjct: 31 VLPLFIFDKNILDKLEDK---KDRRVQFIYDQISNISEQLKDFESSILVKYGYPLEVFQS 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + I + N DYEP A RD+ IK K C+F +KDQVIFEK EILN +G+ Y
Sbjct: 88 LFKEYTIQNIYTNRDYEPYAEERDQSIKDLAKKNNCQFLDFKDQVIFEKGEILNGSGEFY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y + W++K K +K S L+ KI I SL D+GF KSNL
Sbjct: 148 KVFTPYSRIWLDKFKKSKL--------SPLSLDGRKRNFLKIDALPIPSLVDMGFEKSNL 199
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
++ IK Y+ RN+P+INGT+ L IHLRFGT+S+RKL
Sbjct: 200 KIPALEINKP-----------LIKKYDQVRNFPAINGTTRLGIHLRFGTVSVRKLA---- 244
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
++ D T+L++LIWR+FY MIL P V +K+FK +YD I W + ++++
Sbjct: 245 --LEAAQLND-----TYLNELIWREFYMMILAHNPQVTDKAFKPQYDQIPWRN---SEED 294
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC G TGYP++D+ + +LN++GYMHNR+RM+ ASFL K++ ++WKWGE YFA KL D
Sbjct: 295 FQKWCDGKTGYPIVDAGMRELNATGYMHNRVRMIVASFLTKHLLLDWKWGEAYFAKKLLD 354
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
F+L+SNNG WQW+A +G +QP+FR+FNP Q++KFD + +I+K++P+
Sbjct: 355 FELSSNNGGWQWAAGTGTDAQPYFRVFNPESQTEKFDKELKYIKKWVPE----------- 403
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
Y +K YPKP++EH +++ L+ Y
Sbjct: 404 ------YGTDK--------YPKPMVEHKFARERALETY 427
>gi|404450628|ref|ZP_11015608.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
gi|403763683|gb|EJZ24627.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
Length = 432
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 181/458 (39%), Positives = 273/458 (59%), Gaps = 61/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD+NILD L + +D R+EFI I ++S L++++S ++++Y ++
Sbjct: 31 VLPLFIFDRNILDDLEDK---KDARVEFIHDQIQKISNGLKDFESSILVKYGKPLDIWQE 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + +I V N DYEP A RD +KK LK +F +KDQVIFEK+EI+N +G Y
Sbjct: 88 LLEEYDIQNVYTNRDYEPYAKERDTQVKKLLKERNIQFLDFKDQVIFEKDEIVNGSGDFY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y K W+EK +K +++ + N + L +I SL D+GF K+ +
Sbjct: 148 KVFTPYSKVWLEKF--HKSKIETVSLDGRKRNFFKTKPL------DIPSLEDMGFEKTEI 199
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
++ I+ Y+ RN+P+INGTS L IHLRFGTISIRKL +
Sbjct: 200 KIPPLEIDKP-----------LIRKYDKTRNFPAINGTSRLGIHLRFGTISIRKLALEAY 248
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ K T+L++LIWR+FY MILY P+VV+K+FK +YD I W + +
Sbjct: 249 ELNK-----------TYLNELIWREFYMMILYHNPDVVDKAFKPKYDQIPWRN---KEDE 294
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYP++D+ + +LN +GYMHNR+RM+ ASFL K++ I+W+WGE YFA KL D
Sbjct: 295 FEKWCEGKTGYPIVDAGMRELNQTGYMHNRVRMIVASFLTKHLLIDWRWGEAYFAKKLLD 354
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
F+L+SNNG WQW+A +G +QP+FR+FNP Q++KFD + +I+K++P+
Sbjct: 355 FELSSNNGGWQWAAGTGTDAQPYFRVFNPESQTEKFDKELKYIKKWVPE----------- 403
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
Y +K YP+PI+ H ++K ++ Y
Sbjct: 404 ------YGTDK--------YPEPIVAHKAARKRAIETY 427
>gi|327402941|ref|YP_004343779.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
gi|327318449|gb|AEA42941.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
Length = 434
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 184/460 (40%), Positives = 264/460 (57%), Gaps = 61/460 (13%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
++V +FIFD IL L D+R+ FI ++I L Q + L I + ++ I
Sbjct: 29 LKVQAIFIFDSQILAHLSKN----DQRVLFIHQTIQNLQQAYQKLGASLWIFHGNPTEII 84
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
+LV K I V N DYEP A+ RDK + L IGC+F KD VIFEK EI+ G
Sbjct: 85 PQLVQKHEIKHVFCNRDYEPNALKRDKSVYDALTKIGCQFSGSKDHVIFEKEEIVKSDGN 144
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
PY +F+ Y K+W E++ N YLQ YPV+ Y++NL ++ + + +L++LGF S
Sbjct: 145 PYHVFTPYMKRWKEQL--NDFYLQPYPVEKYIHNLNPNNHV------ELPTLSELGF--S 194
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ + + I I++Y R++P+INGT+ LSIHLRFGTISIR+L K
Sbjct: 195 EIQTQHFPSAEIPQTI--------IQSYENTRDFPAINGTTRLSIHLRFGTISIRELAKQ 246
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
K +K++ ++LIWRDFYQMIL+ YP + ++F+KEY I WE D +
Sbjct: 247 ALKTNEKYF-----------NELIWRDFYQMILFFYPRTIEETFRKEYGRIEWEFD---E 292
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
K F WC G TGYPL+D+ + +LN +G+MHNR+RMV ASF K++ +WK GE YFA KL
Sbjct: 293 KLFQAWCDGKTGYPLVDAGMRELNETGHMHNRVRMVVASFFCKHLFHDWKLGERYFAEKL 352
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
DF+LASN G WQW+A G + P+FRIFNP Q ++FD Q +I+K++P+
Sbjct: 353 LDFELASNVGGWQWAAGCGVDAAPYFRIFNPTTQQERFDPQFEYIKKWVPEFGT------ 406
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+YP+PI+EH +++ L+ Y
Sbjct: 407 -------------------SDYPQPIVEHKWARERTLENY 427
>gi|124007987|ref|ZP_01692687.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
gi|123986571|gb|EAY26370.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
Length = 447
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 186/469 (39%), Positives = 273/469 (58%), Gaps = 73/469 (15%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINL-QNYDSDLIIRYAIASKEIK 61
V +FIFD++ILD L + +D R+ +I+ ++ ++ +L + S L + Y + +
Sbjct: 31 VLPIFIFDRHILDDLEDK---KDLRVAYIYAALQQIQQSLADDLQSSLKVYYDYPEQVFE 87
Query: 62 KLV---IKLN-----IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNE 113
+L I LN + +V NHDYEP A RD+ +++ L G + S+KDQVIFEK E
Sbjct: 88 QLTQAGITLNGETYQVKSVYTNHDYEPYARQRDEKVQQILSNSGVAWHSFKDQVIFEKQE 147
Query: 114 ILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN 173
+L KPY++F+ Y KKW K +LQ V S+ NL+ S ++ L
Sbjct: 148 VLTNADKPYTVFTPYSKKW--KHHLTDAHLQERLVASHAQNLLKLSP-----QLPLMPLE 200
Query: 174 DLGFCKSNLSSLGIKTGASGAKILLNNFIKK--IKNYNINRNYPSINGTSYLSIHLRFGT 231
GF N S KT IKK + +Y NR++P++ GTS LS+HLRFGT
Sbjct: 201 KTGFVDIN-KSFSSKT------------IKKQLVIDYQQNRDFPAVQGTSRLSVHLRFGT 247
Query: 232 ISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNI 291
+SIRK+VK K+ TWL++LIWR+FY MILY +P+VV+KSFK YD I
Sbjct: 248 VSIRKIVKAAQKYSD-----------TWLNELIWREFYMMILYSFPHVVDKSFKPAYDCI 296
Query: 292 LWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKW 351
W ++ F WC+G TGYP++D+ + +LN++G+MHNR+RM+TASFL K++ I+W+W
Sbjct: 297 QWRNN---PDEFKRWCEGTTGYPIVDAGMRELNTTGFMHNRVRMITASFLTKHLLIDWRW 353
Query: 352 GENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQ 411
GE YFA KL D+DL++NNG WQW+A SGC + P+FR+FNP Q++KFD Q +IR+++P+
Sbjct: 354 GEAYFAKKLLDYDLSANNGGWQWAAGSGCDAAPYFRVFNPYAQTEKFDKQRQYIRQWVPE 413
Query: 412 LSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+LS YP PI+EH +++ L Y
Sbjct: 414 F-ELS------------------------RYPAPIVEHKFARQRALDTY 437
>gi|410029665|ref|ZP_11279495.1| deoxyribodipyrimidine photolyase [Marinilabilia sp. AK2]
Length = 433
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 178/458 (38%), Positives = 271/458 (59%), Gaps = 61/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ +FIFD+NILD L + +D R+ FI I +L L+++ S ++++Y + K+
Sbjct: 31 ILPIFIFDRNILDKLEDK---KDARVTFIHTQIEKLQNQLKDFGSSMLVKYGEPMEIWKE 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ +ID V N DYEP AI RDK +K+ L G +F +KDQVIFEK+E++N +G Y
Sbjct: 88 LLNSYSIDNVYTNRDYEPYAISRDKRVKELLSGHGVQFLDFKDQVIFEKSEVVNGSGDFY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y K W+EK + N + S + NN + L I SL +GF S++
Sbjct: 148 KVFTPYSKVWLEKFRQNPPQVVSLDKRK--NNFIQIDPLP------IPSLESMGFENSDI 199
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
++ + I+ Y+ RN+P+I GT+ L IHLRFGTIS+RKL
Sbjct: 200 KIPPLEVDK-----------ELIQKYDKLRNFPAIKGTTRLGIHLRFGTISVRKLA---- 244
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
++ D T+L++LIWR+FY MILY P VV+++FK +YDNI W D + +
Sbjct: 245 --LEAALLND-----TYLNELIWREFYMMILYHNPQVVDRAFKPQYDNIPWRRD---END 294
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYP++D+ + +LN++GYMHNR+RM+ ASFL K++ I+W+WGE YFA KL D
Sbjct: 295 FNKWCEGKTGYPIVDAGMRELNATGYMHNRVRMIVASFLTKHLLIDWRWGEAYFAKKLLD 354
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
F+L+SNNG WQW+A +G +QP+FR+FNP Q++KFD + +I+K++P+
Sbjct: 355 FELSSNNGGWQWAAGTGTDAQPYFRVFNPESQTEKFDKELKYIKKWVPEYGT-------- 406
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
KNYP+P++ H +++ + Y
Sbjct: 407 -----------------KNYPEPMVVHKFARERAIATY 427
>gi|440749714|ref|ZP_20928960.1| Deoxyribodipyrimidine photolyase [Mariniradius saccharolyticus AK6]
gi|436482000|gb|ELP38146.1| Deoxyribodipyrimidine photolyase [Mariniradius saccharolyticus AK6]
Length = 434
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 171/459 (37%), Positives = 265/459 (57%), Gaps = 61/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD+NILD L + +D R+ FI I LS LQ++ S ++++Y ++
Sbjct: 31 VLPLFVFDRNILDKLEDK---DDARVTFIHDQIQRLSSELQHFGSSILVKYGSPLDVYRE 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ +I V N DYEP A RD LK G +F +KDQVIFEK+EILN +G Y
Sbjct: 88 LLETYDIQVVYTNRDYEPYAKERDAAAAALLKRKGIQFLDFKDQVIFEKDEILNGSGDFY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y + W+++ + K +Q+ + + NN +S L I SL ++GF +S +
Sbjct: 148 KVFTPYSRAWMDRFQ--KSNIQTLALDARKNNFYQTSPL------PIPSLEEMGFERSKI 199
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ +K S I Y+ R++P++ GTS L +HLRFGTIS+R+L
Sbjct: 200 TIPPLKVDES-----------LIAKYDKTRDFPAVAGTSRLGVHLRFGTISVRQLALKAV 248
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
K + T+L++LIWR+FY MIL+ P VV+ +FK YD I W ++++
Sbjct: 249 KLNQ-----------TYLNELIWREFYMMILFHNPQVVDHAFKPAYDQITWRR---SEED 294
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC G TG+P++D+ + +LN++GYMHNR+RM+ ASFL K++ I+W+WGE YFA KL D
Sbjct: 295 FKKWCDGRTGFPIVDAGMRELNATGYMHNRVRMIVASFLTKHLLIDWRWGEAYFAKKLLD 354
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
F+L+SNNG WQW+A +G +QP+FR+FNP Q++KFD + +IRK++P+
Sbjct: 355 FELSSNNGGWQWAAGTGTDAQPYFRVFNPESQTEKFDKELKYIRKWIPEFGT-------- 406
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+YPKP+++H +++ + Y
Sbjct: 407 -----------------SDYPKPMVDHKFARQRAIDTYQ 428
>gi|383450756|ref|YP_005357477.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium indicum
GPTSA100-9]
gi|380502378|emb|CCG53420.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium indicum
GPTSA100-9]
Length = 428
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/464 (39%), Positives = 269/464 (57%), Gaps = 72/464 (15%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV +FIFD IL L Q D R+ FI + + ++++ L++ L + Y +
Sbjct: 27 EVLPIFIFDTTILKHLDKQ----DARVSFIHQELNKINLKLKSIGKSLALFYGTPEEIFN 82
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L+ + +I+AV NHDYEP A RDK + + LK G F + KDQVIFEK+E++ + G P
Sbjct: 83 QLIAENSIEAVYANHDYEPAARKRDKSVNELLKSNGISFKTCKDQVIFEKSEVVKEDGSP 142
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN--IISLNDLGFCK 179
Y +++ Y KKW+EK KS + LNN + HK N+N ++L ++GF
Sbjct: 143 YVVYTPYSKKWLEKFKSIQ-----------LNNYPSETLTHKFTNHNYPFLTLENIGFVP 191
Query: 180 SNLSSLGIKTGASGAKILLNNFI---KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
++ I L +F K+I NY RN+P+I GTS + IHLRFGTISIRK
Sbjct: 192 TS--------------IRLPHFTIDEKRISNYEGTRNFPAIEGTSLIGIHLRFGTISIRK 237
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
LV + F T+L +LIWR+F+ IL+ +P+ KSFK++YD I W ++
Sbjct: 238 LVNYVQNF----------SNVTYLKELIWREFFMQILWHFPHTTAKSFKEKYDAIEWLNN 287
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
+F WC+G TGYP +D+ + +LN++G+MHNR+RM+ ASFL K++ I+W+WGE YF
Sbjct: 288 EL---DFNKWCEGKTGYPFVDAGMRELNATGHMHNRVRMIVASFLCKHLLIDWRWGEAYF 344
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
A KL D++ ASN GNWQW+A SG + P+FRIFNP Q KKFD + +I+K++P+L+
Sbjct: 345 ATKLLDYEQASNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDSELKYIKKWIPELNT-- 402
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
NYP+PI+EH L+++ L Y
Sbjct: 403 -----------------------SNYPEPIIEHKLARERCLTTY 423
>gi|110638357|ref|YP_678566.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC
33406]
gi|110281038|gb|ABG59224.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme)
[Cytophaga hutchinsonii ATCC 33406]
Length = 433
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 172/415 (41%), Positives = 252/415 (60%), Gaps = 37/415 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD NIL+ L + D R+EFI +I L LQ SD+ + +A ++ ++
Sbjct: 31 VLPVFIFDINILNALEHKN---DARVEFIHDTIQSLKNELQKIHSDMEVYHATPAEAFEQ 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
LV K + A+ N DYEP AI RD I F S+KDQVIFEKNEIL TG PY
Sbjct: 88 LVKKYTVKAIYTNTDYEPAAIKRDNEISDWAAQQQIAFKSFKDQVIFEKNEILTDTGAPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ Y+ KW++K+ N PV ++ + H+ ++ I++L LGF S++
Sbjct: 148 RVYTPYKNKWLKKLTEN-------PV-THSPSEKHTDAFLRMEAKPIVTLKQLGFTPSSI 199
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSI-NGTSYLSIHLRFGTISIRKLVKLI 241
++T K I+ Y+ R+YP + +GTS L IH RFGTISIR+ V
Sbjct: 200 QIPPLET-----------LRKTIQEYDKTRDYPYLEHGTSLLGIHFRFGTISIREKVVKA 248
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
TWLS+LIWR+F+ +L+ +P+VV +SF+ +++ + W Y++
Sbjct: 249 LPLNA-----------TWLSELIWREFFMQLLFHFPHVVTESFQSKFNRLEW---RYSQA 294
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC G TGYPL+D+ + +LN++G+MHNR+RMV ASFL K++ I+W+WGE YFA KL
Sbjct: 295 DFEKWCTGKTGYPLVDAGMRELNTTGHMHNRVRMVVASFLTKHLFIDWRWGEAYFAQKLL 354
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
D+DL++NNGNWQW+A +G +QP+FRIFNPI Q +KFD I+I+K++P+ S
Sbjct: 355 DYDLSANNGNWQWAAGTGADAQPYFRIFNPISQQEKFDPDFIYIKKWVPEFGTSS 409
>gi|365877752|ref|ZP_09417247.1| deoxyribodipyrimidine photo-lyase [Elizabethkingia anophelis Ag1]
gi|442589479|ref|ZP_21008287.1| deoxyribodipyrimidine photo-lyase [Elizabethkingia anophelis R26]
gi|365754465|gb|EHM96409.1| deoxyribodipyrimidine photo-lyase [Elizabethkingia anophelis Ag1]
gi|442561089|gb|ELR78316.1| deoxyribodipyrimidine photo-lyase [Elizabethkingia anophelis R26]
Length = 432
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 176/460 (38%), Positives = 274/460 (59%), Gaps = 64/460 (13%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ V VFIFD +ILD L DRR+++I +++I ++ L Y S L + + +
Sbjct: 30 LPVLPVFIFDTDILDQLSDP---YDRRVDYIHQALISINDTLHKYQSTLQVYHGKPLEIF 86
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
+ + + + AV N DYEPQAI RD +KK+L+ G +F+ +KDQVIF+++E++ G
Sbjct: 87 ELITTQYQVQAVYCNRDYEPQAIKRDHAVKKKLQKNGIQFYDFKDQVIFDQSEVVKADGL 146
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
Y++++ Y KKW +++ K LNNL+ + +NI+SL ++GF K+
Sbjct: 147 AYTVYTPYAKKWRSELQQE----HYKTAKVDLNNLLKAQP------DNIVSLANIGFRKT 196
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+++ + I IK+YN R++P+++ TS+L I LRFGTISIR+ V
Sbjct: 197 DIN---FQKPTPDLSI--------IKDYNQYRDFPALDKTSHLGIALRFGTISIRECVS- 244
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
F KH T WLS+LIWR+F+ ILY +P VV++SFK +YD I W ++ +
Sbjct: 245 ---FAIKHNDT-------WLSELIWREFFMQILYHFPEVVHRSFKPQYDYIEWRNN---E 291
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+ F WC+G TGYP++D+ + QLN++G+MHNR+RM+ ASFL K++ I+W+WGE YFA KL
Sbjct: 292 EEFQRWCRGETGYPIVDAGMRQLNTTGFMHNRVRMIVASFLCKHLLIDWRWGEAYFAEKL 351
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D+DLA+NNGNWQW+A SGC + P+FRIFNP Q++KFD +I+K+ P
Sbjct: 352 LDYDLAANNGNWQWAAGSGCDAAPYFRIFNPTAQTQKFDKDLQYIKKWNPDFQ------- 404
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+N PI++H +++++ L+ Y
Sbjct: 405 -------------------QNITPPIVQHEIARQHALQVY 425
>gi|332662341|ref|YP_004445129.1| deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
1100]
gi|332331155|gb|AEE48256.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
1100]
Length = 449
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 172/471 (36%), Positives = 265/471 (56%), Gaps = 72/471 (15%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD ILD L ED R+ F+ + I EL L++ S +++RY ++ +
Sbjct: 31 VLPLFIFDTEILDELDDP---EDARVAFLHQRITELQAELEHLGSSMLVRYGKPAEVWPE 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
++ + V NHDYEP+AI RD+ ++ L +FS+KDQVIFEK E+ GKPY
Sbjct: 88 ILQDYLVAEVYTNHDYEPRAIQRDEAVQNLLAQQNIPYFSFKDQVIFEKLEVTKLDGKPY 147
Query: 123 SIFSFYQKKW-------IEKVKSNKC------YLQSYPVKSYLNNLVHSSKLHKIINNNI 169
++F+ Y + W +E ++ N +L+ YP + Y N ++ +
Sbjct: 148 TVFTPYSRMWKNCLASQMETIQENGIEQVISFFLKPYPTEKYYPNFWQTAP------PPL 201
Query: 170 ISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRF 229
+L+ +GF S+++ + T + G IK Y+ R++P +NGTS L IH RF
Sbjct: 202 PALSAMGFQPSSIA-IPPTTVSRGL----------IKQYDKTRDFPYLNGTSRLGIHFRF 250
Query: 230 GTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYD 289
GTISIR+ + + + T+L++LIWRDFY IL+ +P+V +SF+ EYD
Sbjct: 251 GTISIREKARRALELNE-----------TFLNELIWRDFYAQILFNFPHVAQRSFRPEYD 299
Query: 290 NILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINW 349
I W +D + F WC G TGYP++D+ + +LN++GYMHNR+RM+TASFL K++ I+W
Sbjct: 300 QIEWRND---EDEFEKWCAGKTGYPIVDAGLRELNATGYMHNRVRMITASFLTKHLLIDW 356
Query: 350 KWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYL 409
+WGE YFA KL D+DLASNNG WQW+A G + P+FR+F+P Q +KFD + ++RK++
Sbjct: 357 RWGEAYFAKKLLDYDLASNNGGWQWAAGCGTDAAPYFRVFSPAAQQEKFDPEYKYVRKWV 416
Query: 410 PQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
P+ YPKPI++H +++ L+ Y
Sbjct: 417 PEYGT-------------------------DAYPKPIVDHKFARERCLEVY 442
>gi|300778354|ref|ZP_07088212.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
gi|300503864|gb|EFK35004.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
Length = 431
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 182/458 (39%), Positives = 274/458 (59%), Gaps = 63/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD +IL L + EDRR+++I +++ +++I+L+ Y S L Y + +K
Sbjct: 32 VMPVFIFDTDILGKLEDK---EDRRVDYIHQALTDINISLKKYHSKLNTYYGKPIEIFRK 88
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + +I++V N DYEPQAI RDK I F + KDQVIF+K++I+ K G PY
Sbjct: 89 LSEEYDIESVFCNRDYEPQAIERDKEIYYFFTEKKIPFKACKDQVIFDKDQIVKKDGTPY 148
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y KKW E + + Q+ V+ NL ++I++ ++GF K++
Sbjct: 149 TVYTPYAKKWRELLTPE--HYQA--VELNFKNLFSQE------YSDILTSKEIGFKKTDF 198
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+K +L+ I I +Y+ R+YP++ T+ L I LRFGTISIRK V
Sbjct: 199 KF---------SKPVLDASI--IDDYDQYRDYPALQHTTQLGIALRFGTISIRKCVA--- 244
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
F KH WLS+LIWR+F+ ILY +P VV++SFK+ YD+I W ++ +K
Sbjct: 245 -FALKHNAV-------WLSELIWREFFMQILYHFPRVVHQSFKERYDDIQWRNN---EKE 293
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F +WC+G TGYP++D+ + +LN +GYMHNR+RM+ ASFL K++ I+W+WGE YFA+KLND
Sbjct: 294 FRHWCEGTTGYPIVDAGMRELNQTGYMHNRVRMIVASFLCKHLLIDWRWGEAYFASKLND 353
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+DLA+NNGNWQW+A SGC + P+FR+FNP Q++KFD +I+K+LP+
Sbjct: 354 YDLAANNGNWQWAAGSGCDAAPYFRVFNPTTQTEKFDKDLQYIKKWLPE----------- 402
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
W YP PI+EH+ +++ L Y
Sbjct: 403 -WNTPE-------------YPSPIVEHTFARERALSEY 426
>gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
Length = 433
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 173/460 (37%), Positives = 264/460 (57%), Gaps = 62/460 (13%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ V +FIFD ILD L+ + D R+ FI + E++ L+ S ++I++ +
Sbjct: 29 IPVLPLFIFDSEILDDLKDKS---DARVNFIHDQLTEINDQLKKIGSGVLIKHGKPEEVY 85
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
K L+ + NI AV N DYEP A+ RD+ I L+ G F+ +KD VIFEK+EIL +
Sbjct: 86 KSLIKEYNIQAVFTNRDYEPYALERDQKIDNILQQKGIGFYDFKDHVIFEKDEILTGGNE 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
PY +F+ ++ KW+EK++S ++ Y + N I +L+++GF +S
Sbjct: 146 PYKVFTPFKNKWLEKLESG--HIHPYEIHLTAENFFQ-------FEPEIPTLDEIGFRES 196
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
++ + S I+ Y+ R++P+ NGTS L IHLRFGTISIR+ V
Sbjct: 197 DVPIPKKEYEES-----------TIQKYDQERDFPAKNGTSRLGIHLRFGTISIREAVAH 245
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
K TWL++LIWRDFY MIL +P+VV +FK +YD I W + +K
Sbjct: 246 AQKLND-----------TWLNELIWRDFYSMILANFPHVVKNAFKAKYDAIPWRN---SK 291
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
++F WC G TGYP++D+ + +LN +GYMHNR+RM+ ASFL K++ I+W+WGE YFA KL
Sbjct: 292 EDFQKWCAGKTGYPIVDAGMRELNETGYMHNRVRMIVASFLTKHLLIDWRWGEAYFAEKL 351
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D++LASNNG WQW+A +G +QP+FRIFNP Q+ KFD +I+K++P+++
Sbjct: 352 LDYELASNNGGWQWAAGTGTDAQPYFRIFNPYSQTDKFDKNKAYIKKWIPEINT------ 405
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+YP+P+++H +++ L Y
Sbjct: 406 -------------------SDYPEPMVDHKKARQRALDTY 426
>gi|406662067|ref|ZP_11070173.1| Deoxyribodipyrimidine photo-lyase [Cecembia lonarensis LW9]
gi|405554054|gb|EKB49180.1| Deoxyribodipyrimidine photo-lyase [Cecembia lonarensis LW9]
Length = 433
Score = 327 bits (838), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 176/458 (38%), Positives = 266/458 (58%), Gaps = 61/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ +FIFD++ILD L + +D R+ FI I L +LQ + + ++ +Y + K+
Sbjct: 31 ILPIFIFDRDILDKLEDK---KDARVTFIHHQIDILQKHLQGFGTSILTKYGKPLEVWKE 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ +I+ V N DYEP A RDK + LK G +F +KDQVIFEK+E++N +G Y
Sbjct: 88 LLDSYDIENVYTNRDYEPYAKERDKEVAALLKSHGVQFLDFKDQVIFEKSEVVNGSGDFY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y K W+EK N Q + NN V I+SL +GF +S++
Sbjct: 148 KVFTPYSKVWLEKFNQNPP--QIVTLDKRKNNFVQVEPF------PIVSLESMGFEESDV 199
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ LL I+ Y+ RN+P+INGTS L IHLRFGT+S+RKL
Sbjct: 200 NI-----------PLLEIDKNLIQQYDKVRNFPAINGTSRLGIHLRFGTVSVRKLALEAA 248
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ T+L++LIWR+FY MILY P VV+K+FK +YDNI W + + +
Sbjct: 249 RLNA-----------TFLNELIWREFYMMILYHNPQVVDKAFKPQYDNIPWRRN---EDD 294
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F+ WC+G TGYP++D+ + +LN++GYMHNR+RM+ ASFL K++ I+W+WGE YFA KL D
Sbjct: 295 FIKWCEGKTGYPIVDAGMRELNATGYMHNRVRMIVASFLTKHLLIDWRWGEAYFAKKLLD 354
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
F+L+SNNG WQW+A +G +QP+FR+FNP Q++KFD + +I+K++P+
Sbjct: 355 FELSSNNGGWQWAAGTGTDAQPYFRVFNPESQTEKFDKELKYIKKWVPEYGT-------- 406
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
K+YP+P++ H +++ + Y
Sbjct: 407 -----------------KDYPEPMVAHKFARERAIATY 427
>gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
Length = 435
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/460 (37%), Positives = 264/460 (57%), Gaps = 61/460 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL+ L D R+ FI++ I ++ L SDLI+R+ + +K
Sbjct: 31 VLPLFIFDSEILENLDDPA---DARVTFIYEQIQDMKQQLNAKKSDLIVRHGKPLEVLKT 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L ++ ++A+ NHDYEP A RD+ + G +F ++KDQ +FEK+EIL KPY
Sbjct: 88 LSDEMAVEAIYANHDYEPAARKRDEKVAAWAAKAGIEFLTFKDQCLFEKDEILTDARKPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y+ K + + ++ YL+SYP N+L SS +++L LGF +SN+
Sbjct: 148 TVYTPYRNKVLANL--SEFYLKSYP-----NDLYESSYAKVKKAEPLLTLKSLGFERSNI 200
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSIN-GTSYLSIHLRFGTISIRKLVKLI 241
+ K +K Y+ R++P+ GTS+L +HLRFGT+S+R+L +
Sbjct: 201 EFPPMDLS-----------TKMLKTYHATRDFPADEKGTSHLGLHLRFGTLSVRELAREA 249
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K+ WLS+LIWRDF+ IL+ +P V N+SF+ EYD I W +K
Sbjct: 250 KKYSP-----------VWLSELIWRDFFMQILWHFPQVENQSFRPEYDKIAWRK---SKA 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC+G TGYPL+D+ + +LN++GYMHNR+RMV ASFL K++ I+W GE YFA KL
Sbjct: 296 DFQKWCEGRTGYPLVDAGMRELNATGYMHNRVRMVVASFLCKHLLIHWYEGERYFAKKLL 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+DL++NNGNWQW+A SGC + P+FRIFNP Q +KFD G +++K++P+
Sbjct: 356 DYDLSANNGNWQWAAGSGCDAAPYFRIFNPQTQFEKFDPDGKYVQKWVPEYGT------- 408
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
YP+P+++H+ ++ L+ +
Sbjct: 409 ------------------DEYPQPMVDHNEARGRCLQAFT 430
>gi|426404142|ref|YP_007023113.1| deoxyribodipyrimidine photo-lyase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860810|gb|AFY01846.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 435
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 173/460 (37%), Positives = 264/460 (57%), Gaps = 61/460 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL+ L D R+ FI+ I ++ L+ SDL++R+ + +K
Sbjct: 31 VLPLFIFDSEILEKLEDPA---DARVTFIYDQIQDIKQQLKTKKSDLLVRHGKPLEVLKA 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L ++ I+A+ NHDYEP A RD+ + G +F ++KDQ +FEK+EIL + KPY
Sbjct: 88 LSTEMEIEAIYANHDYEPAACKRDEKVAAWAAKAGIEFLTFKDQCLFEKDEILTEARKPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y+ K V +N L S+ +KSY N+L SS + +L GF +S +
Sbjct: 148 TVYTPYKNK----VLAN---LTSFYLKSYPNDLYESSYAKVKKPEALPTLKSFGFERSQI 200
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPS-INGTSYLSIHLRFGTISIRKLVKLI 241
+ K +K+Y R++P+ GTS+L +HLRFGT+S+R+L +
Sbjct: 201 EFPPMDLS-----------TKMLKSYQATRDFPANEKGTSHLGLHLRFGTLSVRELAREA 249
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
KKH WLS+LIWRDF+ IL+ +P V N+SF+ EYD I W +K
Sbjct: 250 ----KKHSPV-------WLSELIWRDFFMQILWHFPQVENQSFRPEYDKIAWRK---SKS 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC+G TGYPL+D+ + +LN++GYMHNR+RMV ASFL K++ I+W GE YFA KL
Sbjct: 296 DFQKWCEGRTGYPLVDAGMRELNATGYMHNRVRMVVASFLCKHLLIHWYEGERYFAKKLL 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+DL++NNGNWQW+A SGC + P+FRIFNP Q +KFD G +++K++P+ +
Sbjct: 356 DYDLSANNGNWQWAAGSGCDAAPYFRIFNPQTQFEKFDPDGKYVQKWVPEYGTDA----- 410
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
YP+P+++H+ ++ L+ +
Sbjct: 411 --------------------YPEPMVDHNEARGRCLQAFT 430
>gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
Length = 433
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 179/458 (39%), Positives = 257/458 (56%), Gaps = 62/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD +IL+ L +D R+ FI++ + +++ LQ++D+ +++++ + +++
Sbjct: 32 VIPLFIFDSDILEKLPK----DDARVTFIYEELEKINTTLQSHDASILVKHGKPLEVLEE 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
++ K I AV NHDYEP AI RDK + + L +F +YKDQVIFE+NE++ G PY
Sbjct: 88 IIGKHEISAVYTNHDYEPYAIARDKEVGELLASKNIEFKTYKDQVIFERNEVVKADGDPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
I++ Y KKW++K+ N S SY N S N SL D+GF S++
Sbjct: 148 IIYTPYSKKWLDKLTKND--YTSVDCASYYKNYAKKS-------FNFPSLKDIGFTASSI 198
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
L + I NY RN+P+I GTS LS HLRFGTIS+RK V+
Sbjct: 199 KVLPYTMAEN-----------MIDNYEDTRNFPAIEGTSRLSPHLRFGTISVRKCVQNGL 247
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ +L +L+WR+F+ IL+ +P V +FK +YD I W +D +
Sbjct: 248 QSENN----------VFLKELVWREFFMQILWHFPKSVTNNFKSKYDGIKWRND---EDE 294
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
+ WC+G TGYPL+D+ + +LN SGYMHNR+RM+TASFL K++ I+WKWGE YFA KL D
Sbjct: 295 YKAWCEGKTGYPLVDAGMRELNESGYMHNRVRMITASFLCKHLLIDWKWGEAYFAKKLLD 354
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
FDLA N GNWQW A +GC S P+FRIFNP Q KKFD +I K+ +L+
Sbjct: 355 FDLAQNVGNWQWVAGTGCDSSPYFRIFNPTSQIKKFDKDHTYINKWASDYQELT------ 408
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP PI+EH +++ L Y
Sbjct: 409 -------------------YPSPIVEHKFARERCLSTY 427
>gi|374289278|ref|YP_005036363.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus
SJ]
gi|301167819|emb|CBW27403.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus
SJ]
Length = 434
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 177/409 (43%), Positives = 252/409 (61%), Gaps = 38/409 (9%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFDKNIL+ L +D R+ FI + + LS + YD DL+ Y K+
Sbjct: 35 VLPIFIFDKNILNKLER----DDSRVSFIHECLQNLSEKFRKYDGDLLTFYNSPKNAWKE 90
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ ++ V N DYEP A+ RDK I+ L G KF SYKDQ IF K +IL K G PY
Sbjct: 91 IFESFDVQEVYTNEDYEPYALSRDKSIEDYLTRKGIKFQSYKDQCIFSKFDILKKDGTPY 150
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y+ KW+E ++ + L S +KS N SK++K + I SL LGF KS++
Sbjct: 151 TVYTPYKNKWLETLQPSD--LAS--IKSEKN----LSKIYKF-KSEIHSLMSLGFTKSHI 201
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
S NY+ R+ PSINGTS L +HLRFGTI RKL + +
Sbjct: 202 SFPKRIIKKKIIT-----------NYHETRDLPSINGTSLLGVHLRFGTIGPRKLASIAY 250
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
K TWL++LIWR+F+ IL+ +P+VVN F+++Y++I W ++ K+
Sbjct: 251 HTNK-----------TWLNELIWREFFSQILFHFPHVVNAPFREKYESIEWRNN---KEE 296
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TG+PL+D+ + +LN +G+MHNR+RM+ ASFL+K++ I+W+WGE YFA KL D
Sbjct: 297 FKLWCEGRTGFPLVDAGMRELNQTGHMHNRVRMLVASFLVKDLLIDWRWGEKYFAKKLLD 356
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQ 411
FDLASNNGNWQW+A +GC + P+FRIFNP Q KKFD I+++K++P+
Sbjct: 357 FDLASNNGNWQWAAGTGCDAAPYFRIFNPTTQIKKFDPDLIYVKKWVPE 405
>gi|255037995|ref|YP_003088616.1| deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
18053]
gi|254950751|gb|ACT95451.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
18053]
Length = 442
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 181/459 (39%), Positives = 264/459 (57%), Gaps = 62/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD+NILD L + D R+ FI K++ E+ L+ ++D+++ Y K +
Sbjct: 36 VVPLFIFDRNILDDLEEK---TDARLTFIHKAVSEIRQALRQKEADIMVEYGFPEKIWEN 92
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
LV +I V N DYEP A RDK I + LK F + KDQVIFEK EIL+ G PY
Sbjct: 93 LVAGHDIAEVYTNTDYEPYATDRDKAIYRILKQKDIVFKTCKDQVIFEKQEILSGQGSPY 152
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y + W +K+ N YL+SYP K Y + H+ + + SL ++GF K++
Sbjct: 153 TVFTPYSRAWKQKL--NDFYLKSYPTKKYFRHF------HQWHGSALPSLREMGFEKTDY 204
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
A LL KNY R++P++ TS + +HLRFGT+SIR L +
Sbjct: 205 DF----PPADVDDTLL-------KNYAKERDFPAMEATSRIGVHLRFGTVSIRDLAR--- 250
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKK 301
+ +D T+L++LIWRDFYQ IL +P+V +F+K YD I W Y K
Sbjct: 251 ---QARAHSD-----TFLNELIWRDFYQQILSNFPHVGKGDAFRKAYDLIKW---RYDKA 299
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC+G TGYPL+D+ + QLN+ G+MHNR+RMVTASFL K++ I+W+ GE YFA KL
Sbjct: 300 DFKKWCEGKTGYPLVDAGMRQLNAIGFMHNRVRMVTASFLSKHLLIDWRLGEAYFAQKLL 359
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+DLA+NNG WQW+A SG + P+FRIFNP Q++KFD + +I+K++P+
Sbjct: 360 DYDLAANNGGWQWAAGSGTDAAPYFRIFNPASQAEKFDPKMEYIKKWVPEFGT------- 412
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP+P+++H +++ L+ Y
Sbjct: 413 ------------------DEYPEPMVDHKEARERCLQAY 433
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 156/470 (33%), Positives = 262/470 (55%), Gaps = 20/470 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FI D IL R+ RI F+ ++ +L NL+ S L+IR I+
Sbjct: 30 VIPLFILDDAILHAPRTGAA----RIAFMIAALRDLDANLRARGSRLVIRRGRTLDVIRA 85
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+V + V N DY P A RD ++ L+ + + +D V+F +++ G+PY
Sbjct: 86 MVQETGATGVAWNRDYTPFARRRDAQVEAALRDLNVETSIAEDAVVFSPDDVRTGDGRPY 145
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y+++W + + + +++ L+ + + + + DLG S
Sbjct: 146 TVYTPYRRRWRALTEQRRAEV----LRAIEPPLLRPAP-EAVADQTVPDHADLGIVVSQR 200
Query: 183 SSLGIKT-GASGAKILLN-NFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
G +T GA+ ++ I Y R+ + TS LS +LRFG ++ R+ ++
Sbjct: 201 IPPGGETHGAARLAAFVDLAAAHSIAGYAEGRDLLAEPATSRLSPYLRFGCVAPRQALRA 260
Query: 241 IFKFIK----KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ + H I TW+ +L WRDFY IL+ YP+VV +SFK +YD + WE+D
Sbjct: 261 ALRLLDIVGDDHRTVRSIE--TWIGELAWRDFYYQILWHYPHVVRRSFKPQYDALAWEND 318
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
F W +G TGYP+ID+A+ QL +MHNR RM+ ASFL K++ I+W+WGE YF
Sbjct: 319 ---PALFDAWKEGRTGYPIIDAAMHQLRQEAWMHNRARMIVASFLTKDLLIDWRWGERYF 375
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
+L D D A+NNG WQWSA +G +QP+FRIFNP+ Q +KFD +G+++R+YLP+L+++
Sbjct: 376 MQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQKFDPKGLYVRRYLPELAQVP 435
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
++YIH+PW + ++ G+++G++YP PI++H+ + L Y + ++
Sbjct: 436 DRYIHAPWTMPRAEQQRCGVVIGRDYPAPIVDHAERRMRALALYRAVSSV 485
>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
Length = 477
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 173/464 (37%), Positives = 263/464 (56%), Gaps = 24/464 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
E+ +FI D +IL LR + + F+ +S+ L+++ N LI+R + +K
Sbjct: 29 EIIPIFILDDDIL--LRREDF-SPACVGFMLESLEALALSYANIGGKLIVRRGQVLEVLK 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
LV + A+ N DYEP A +RD+ ++ E + +G + ++ DQV F +L G+P
Sbjct: 86 SLVGETRAQAIYFNEDYEPFAKMRDQAVQSEFEKLGVRVKAFTDQVCFHPQRVLKDNGQP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y++F+ YQKKW+ + P + + +L I L +
Sbjct: 146 YTVFTPYQKKWL-------ALSGNIPTPQPALTRISTPELPSI------PLPKTSDIRKK 192
Query: 182 LSSLGIKTGAS--GAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
S I G G K L + I +Y R++P+ N TS LS LRFGT+SIR +
Sbjct: 193 FSVQPIVQGGEPKGLKRLRAFLSQNIYHYKELRDFPATNATSLLSADLRFGTLSIRHVFH 252
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ + + + G T++S+LIWR+FY IL +P+V SFK E++N+ WE++
Sbjct: 253 ESMRLVPQASEPAREGIQTFISELIWREFYFQILDHFPHVEKHSFKPEFENLKWENNEVF 312
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
F W G TGYP++D+A+ L +G+MHNRLRM+ ASFL K++ I+W+WGE YF
Sbjct: 313 ---FEAWKNGQTGYPIVDAAMRALRQTGWMHNRLRMIVASFLTKDLLIDWRWGELYFMQH 369
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D DLA+NNG WQWSAS+G +QP+FRIFNP++QS+KFD +G FIRKY+P+L + +Y
Sbjct: 370 LIDGDLAANNGGWQWSASTGTDAQPYFRIFNPVLQSQKFDPKGEFIRKYVPELQAVPVRY 429
Query: 420 IHSP---WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
IH P + S + G+ LGK+YP PI+EH + ++ L+ Y
Sbjct: 430 IHFPAEILRKSPLLAREIGVALGKDYPHPIVEHKVQREKALRLY 473
>gi|436834800|ref|YP_007320016.1| Deoxyribodipyrimidine photo-lyase [Fibrella aestuarina BUZ 2]
gi|384066213|emb|CCG99423.1| Deoxyribodipyrimidine photo-lyase [Fibrella aestuarina BUZ 2]
Length = 452
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/458 (36%), Positives = 260/458 (56%), Gaps = 55/458 (12%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFDK+ILD L + DRR+EFI++ ++ + L S L++RY K+
Sbjct: 34 VLPLFIFDKDILDHLNDK---RDRRVEFIYEEVLAMQQALHKQGSTLLVRYGRPLDVFKE 90
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + V N+DYE A RD + LK + F SYKDQ +F+++E+L +GKPY
Sbjct: 91 LASEYTLANVFTNYDYETYAKGRDAEVATYLKSVNAGFHSYKDQTLFDRDEVLTGSGKPY 150
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F Y + W+ K+ + YL+SYP + Y + + K +++L +GF L
Sbjct: 151 TVFGPYSRNWLSKL-DDPFYLKSYPTEKYADRFL------KTAPTPMVTLEQMGF--EPL 201
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ K+ S K + Y+ R++P+ GTS LSIHLRFGTISIR+L +
Sbjct: 202 NEKFPKSTVSD---------KLLTTYDKTRDFPAQRGTSELSIHLRFGTISIRELARQA- 251
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
T+L +L WRDFY +L +P+V ++SF++EYD + W + ++
Sbjct: 252 ----------QANNLTYLKELCWRDFYFQVLDHFPHVEHESFRREYDQVPWLN---RPED 298
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
W G TGYPL+D+ + QLN G+MHNR+RMVTASF +K++ I+W+ GE YFA KL D
Sbjct: 299 IERWKAGQTGYPLVDAGMRQLNEIGWMHNRVRMVTASFCVKHLLIDWRIGEAYFAEKLRD 358
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+DL++NNG WQW+A SG + P+FR+FNP Q++KFD +G +IR+++P+ + + +
Sbjct: 359 YDLSANNGGWQWAAGSGTDAAPYFRVFNPTEQARKFDPKGEYIRRWVPEYNNPAGASV-- 416
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP PI++H+ +++ + Y
Sbjct: 417 ------------------TYPAPIVDHAFARQRAITTY 436
>gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
Length = 432
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 179/468 (38%), Positives = 263/468 (56%), Gaps = 65/468 (13%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V +FIFD+ ILD L + D R+ FI I L L+ S L+++Y + +
Sbjct: 30 DVLPLFIFDRTILDDLEDKT---DARVSFIHDQIQNLKEELEKKGSTLLVKYGTPEEVYQ 86
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L+ K I A+ N DYEP A RD+ I+K + G F ++KDQVIFE EILN +G+
Sbjct: 87 ELIKKFEIQAIYTNRDYEPYAKKRDRAIEKLAEEKGISFLTFKDQVIFEPGEILNGSGEF 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ + + W+ K + SY H L++ +ISL ++GF +S+
Sbjct: 147 YKVFTPFSRVWLSKFEETNIEALSY---------FHWKNLYQTKPEPLISLKEMGFERSS 197
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+S + IK Y+ RN+P+ NGTS L IHLRFGTISIR+L
Sbjct: 198 ISIPSSNPNE-----------EIIKYYDKTRNFPAENGTSRLGIHLRFGTISIRQLA--- 243
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K + T+L++LIWR+FY MIL P VV+K+FK YD I W ++ ++
Sbjct: 244 -------LKAASLNE-TYLNELIWREFYMMILDYNPQVVDKAFKPAYDQIPWRNN---EE 292
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYP++D+ + +LN +GYMHNR+RM+ ASFL K++ I+W+WGE YFA KL
Sbjct: 293 EFKAWCEGKTGYPIVDAGMRELNQTGYMHNRVRMIVASFLTKHLLIDWRWGEAYFAKKLL 352
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
DFDLA+NNG WQW+A +G +QP+FR+FNP Q++KFD +I+K++P+
Sbjct: 353 DFDLAANNGGWQWAAGTGTDAQPYFRVFNPSSQTEKFDKDLKYIKKWIPEFGT------- 405
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNR 469
+ YPKPI++H +++ L Y K L+R
Sbjct: 406 ------------------EKYPKPIVDHKFARQRALDTY---KKALDR 432
>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG-6]
gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
Length = 459
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 251/461 (54%), Gaps = 31/461 (6%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
V V+I D +L+ L + R F+ + L LQ++ LI+R+ +
Sbjct: 28 HVLPVYILDPTLLNGLWASPA----RSAFLIAGLRALDAQLQHHGLRLIVRHGEPVATLL 83
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
LV + AV N DY P + RD+ I+ L GC D I ++IL K P
Sbjct: 84 HLVAETGASAVTWNRDYSPYSRRRDQAIEAALHAAGCAVQHTHDVAICPPDQILTKNATP 143
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
YS+++ Y ++W + + P+ +L S + ++ + +
Sbjct: 144 YSVYTPYARQWRTWLAHADLRPVAAPILQPCRDLPVSHAIPDLLAPHPLP---------- 193
Query: 182 LSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
G A+ +L+ F + ++ Y R+ P++ GTS LS +LRFG I++R+ + +
Sbjct: 194 ------PAGELAAQTILDEFTRTSLRTYATQRDLPAVPGTSRLSPYLRFGMIAVRQCLAV 247
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ H G TW+++L WRDFY +L+ +P+V+ +FK +YD++ WE+D
Sbjct: 248 A----QAHPGP---GADTWIAELAWRDFYIQVLFHHPHVLRGAFKPQYDDLAWEND---P 297
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F WC G+TGYP++D+A+ QL G+MHNR RM+ ASFL K++ I+W+WGE YF L
Sbjct: 298 DLFAAWCAGHTGYPMVDAAMRQLQQEGWMHNRARMIVASFLTKDLLIDWRWGERYFMQML 357
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D D A+NNG WQW+AS+G +QP+FRIFNP Q +KFD G +IR+YLP+L+ + N I
Sbjct: 358 LDGDPAANNGGWQWAASTGTDAQPYFRIFNPTCQGQKFDPHGDYIRRYLPELAGVPNHKI 417
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
H+P S+ + +AG+ +G +YP P+++H+ ++ L Y
Sbjct: 418 HTPHLLSASEQMRAGVRIGHDYPAPLVDHAQRRERALGIYR 458
>gi|146297827|ref|YP_001192418.1| deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
gi|146152245|gb|ABQ03099.1| Deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
Length = 431
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/413 (42%), Positives = 252/413 (61%), Gaps = 39/413 (9%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ V +FIFD++ILD L D R+ FI+ S+ +++ L ++S ++I+ +
Sbjct: 31 LPVIPLFIFDEDILDNLPKN----DARVSFIYDSLQKINNELNTFESSILIKKGKTTAVW 86
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
K L+ + +I V N DYEP AI RD I LK + FS+KD VIFE+ EI G
Sbjct: 87 KSLLSEFDIQNVFFNKDYEPFAIKRDTAICSLLKENNVECFSFKDHVIFEEKEITKADGS 146
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
PY++++ Y+ KW+EK +L + P SS +H S DL
Sbjct: 147 PYTVYTPYKNKWLEKYH----FLGTVPE-------CDSSSMHSNFAKTKFSFPDL----- 190
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ +G K S K+L +N + +I NY R++P+++ TSYLS HLRFGT+SIRKLV
Sbjct: 191 --TEIGFKR--STIKVLPHN-LTQIANYKETRDFPALDSTSYLSPHLRFGTVSIRKLVNW 245
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + T+LS+LIWR+F+ IL+ +PN VN +FK YD I W ++ +
Sbjct: 246 ANRKNQ-----------TFLSELIWREFFIQILFSFPNCVNHNFKSAYDGIQWRNN---E 291
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
++F WC G TGYP++D+ + QLN +GYMHNR+RMV ASFL K++ INW+WGE YFA KL
Sbjct: 292 EDFKRWCSGNTGYPMVDAGMRQLNETGYMHNRVRMVVASFLCKHLLINWQWGEAYFAEKL 351
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
DF+LASN GNWQW+A +GC + P+FR+FNP IQ KKFD +G +IRK++P+
Sbjct: 352 LDFELASNVGNWQWAAGTGCDAAPYFRVFNPEIQQKKFDEKGEYIRKWIPEFD 404
>gi|118363134|ref|XP_001014668.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila]
gi|89296559|gb|EAR94547.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila SB210]
Length = 486
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 181/460 (39%), Positives = 267/460 (58%), Gaps = 63/460 (13%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV +FIFD ILD L + +D R+EFI I+++ L+ S LI+++ K
Sbjct: 83 EVVPLFIFDTEILDKLEDK---KDARVEFIHLYIMKIQEQLKQVGSTLIVKHGTVDNAFK 139
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELK-VIGCKFFSYKDQVIFEKNEILNKTGK 120
+LV + +I +V +N DYE A RD+ IKK +K +F+ +KDQVIFE + NK G
Sbjct: 140 ELVSEFDIQSVYVNRDYESSAKQRDERIKKYVKQSANAEFYDFKDQVIFEASST-NKDGS 198
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
PY +F+ Y KKW+ + S + P +S + K K ++SL ++GF K+
Sbjct: 199 PYKVFTPYSKKWLSILTSEDYSCR--PSESLM------EKFWKSPERKVMSLEEIGFEKA 250
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
G + LN I +KNY+ R+ PSI GT+ +S+HLRFGT+SIR LV+
Sbjct: 251 ---------GIPFPSVELNEKI--VKNYDKTRDTPSIEGTTRMSVHLRFGTVSIRDLVR- 298
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
++ + T+L++LIWRDFY MIL +P+V N +FK YD ++W ++
Sbjct: 299 ---------RSKGLNA-TYLNELIWRDFYMMILDQFPHVENNNFKPAYDKLVWRNN---V 345
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F+ WC+G TGY L+D+ + QLN +GYMHNR+RMV ASFL K++ I+WKWGE YFA+KL
Sbjct: 346 DEFMAWCEGKTGYHLVDAGMRQLNQTGYMHNRVRMVVASFLTKHLLIDWKWGERYFASKL 405
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D+DL++NNG WQW+A +G +QP+FRIFNP Q KKFD +I+ ++ L+
Sbjct: 406 LDYDLSANNGGWQWAAGTGTDAQPYFRIFNPDSQQKKFDPNYTYIKTWIKDLN------- 458
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
K YPKPI++H L+++ L+ +
Sbjct: 459 ------------------TKTYPKPIVDHKLARERCLQAF 480
>gi|441499038|ref|ZP_20981228.1| Deoxyribodipyrimidine photolyase [Fulvivirga imtechensis AK7]
gi|441437283|gb|ELR70637.1| Deoxyribodipyrimidine photolyase [Fulvivirga imtechensis AK7]
Length = 431
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 177/458 (38%), Positives = 271/458 (59%), Gaps = 62/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFDKNILD L +D R+ FI + I ++ LQ ++ L+++Y
Sbjct: 31 VLLLFIFDKNILDDLPK----DDPRVTFIHEQITVINQALQQKNTSLVVKYGTPDAVWNT 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ NI V NHDYEP A RD+ I LK F ++KDQV+ E++E+ + G+PY
Sbjct: 87 LIKTHNIQKVYTNHDYEPYARKRDQSIADLLKNSNIDFITFKDQVLLERSEVTKENGEPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y K+W+ KV S+K Y +S P N V K II+L+++GF S
Sbjct: 147 VVFTPYSKQWL-KVISSKDY-ESLPSALLFENFV------KQPFKPIINLDEIGFEHSKH 198
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
S + + + +Y R+YP+ GTS + IHLRFGT+SIRK+
Sbjct: 199 SYPPSELSDT-----------TLAHYKQERDYPARQGTSRMGIHLRFGTVSIRKIAT--- 244
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
K + T+L++LIWR+FYQMIL+ +P VV+++F+ +Y+N+ W ++ +K
Sbjct: 245 --AAKEKSS------TFLNELIWREFYQMILWHFPRVVSENFQTKYNNLKWRNN---EKE 293
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WCKG TGYP++D+ + QLN++GYMHNR+RM+TASFL K++ I+W+WGE YFA KL D
Sbjct: 294 FEAWCKGQTGYPVVDAGLRQLNATGYMHNRVRMITASFLTKHLLIDWRWGEAYFAEKLLD 353
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
++LASNNG WQW+A +G + P+FR+FNP +Q++KFD + +++K++P+L++
Sbjct: 354 YELASNNGGWQWAAGTGVDAAPYFRVFNPELQAQKFDPKQEYVKKWIPELTE-------- 405
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
GK Y KPI++H +++ +K Y
Sbjct: 406 ----------------GK-YTKPIIDHKKARERAIKAY 426
>gi|392397553|ref|YP_006434154.1| deoxyribodipyrimidine photolyase [Flexibacter litoralis DSM 6794]
gi|390528631|gb|AFM04361.1| deoxyribodipyrimidine photolyase [Flexibacter litoralis DSM 6794]
Length = 452
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 183/463 (39%), Positives = 265/463 (57%), Gaps = 61/463 (13%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN--YDSDLIIRYAIASK 58
EV +FI+D ILD L + D R+ I++ + ++ L++ S L I+
Sbjct: 38 FEVLPLFIYDTEILDDLEDKN---DARLTMIYRYLKKIKDELEDKKISSSLCIKIGKPIA 94
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
K+L+ K +I V NHDYEP A +RD+ IK L+ F ++KDQVIFEKNE+L
Sbjct: 95 IYKELIEKFDIKEVYTNHDYEPYAKVRDEEIKDFLEKKDIHFKTFKDQVIFEKNEVLKDD 154
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
PY +++ Y +KW +K +L+SYP + Y +N + KL+K N +L ++GF
Sbjct: 155 QTPYVVYTPYSRKWKAALKP--YHLKSYPTEKYFDNFI---KLNKSEVFNFPTLKEIGFE 209
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKKI-KNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
++ I +F K+I KNY R++P+ GTS LS HLRFGTISIRKL
Sbjct: 210 EN-----------QNPHIPSTDFPKEIIKNYEETRDFPAKEGTSRLSPHLRFGTISIRKL 258
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
L + +K++ ++LIWR+FY ILY YP VVN +F+ YD I W ++
Sbjct: 259 ATLAKETNEKYF-----------NELIWREFYMTILYHYPKVVNNAFRSNYDKIPWRNN- 306
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ F WC+G TGYPL+D+ + QLN +G+MHNR+RMV ASFL K++ I+W+WGE YFA
Sbjct: 307 --ETEFEKWCQGKTGYPLVDAGMRQLNETGFMHNRVRMVVASFLTKHLLIDWRWGEAYFA 364
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D++LASNNG WQW+A SG + P+FR+FNP Q KKFD +IR ++ +
Sbjct: 365 KKLLDYELASNNGGWQWAAGSGVDAAPYFRVFNPESQLKKFDKNQKYIRTWIKEYD---- 420
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
K YPKPI+EH ++++ +L+ Y
Sbjct: 421 ---------------------TKFYPKPIVEHKMARERVLETY 442
>gi|431797441|ref|YP_007224345.1| deoxyribodipyrimidine photolyase [Echinicola vietnamensis DSM
17526]
gi|430788206|gb|AGA78335.1| deoxyribodipyrimidine photolyase [Echinicola vietnamensis DSM
17526]
Length = 431
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 177/458 (38%), Positives = 265/458 (57%), Gaps = 63/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL+ L + +D R+ FI + + +L L+ + ++ + K+
Sbjct: 31 VLPLFIFDTTILEELDDK---KDARVAFIHQRLQQLKEALEAKGFSIWVKTGKPLEIFKQ 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
LV + +I AV N DYEP AI RDK + LK G F +KDQVIFEK+EILN++G Y
Sbjct: 88 LVDENDIAAVYCNRDYEPYAISRDKAVNAFLKEKGIDFLDFKDQVIFEKDEILNESGDFY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ Y+ W++K K+ P +L +LH+ + SL +LGF ++N+
Sbjct: 148 KVYTPYKNAWLKKFKAA-------PPTPLTPDL---KRLHQSSPADFPSLRNLGFDETNI 197
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
S + I+ Y+ R++P+ + TS+L IHLRFGT+SIRKL
Sbjct: 198 SFPPLDIDKP-----------LIRQYDNMRDFPAEDKTSHLGIHLRFGTLSIRKLALEAE 246
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
K T+LS+L+WR+F+ MILY +P VV +SFKK+YDNI W ++ ++
Sbjct: 247 KLNA-----------TFLSELVWREFFMMILYHHPQVVTESFKKKYDNIPWRNN---EEE 292
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC G TGYP++D+ + +LN++GYMHNR+RM+TASFL K++ I+W+WGE YFA KL D
Sbjct: 293 FNKWCAGKTGYPIVDAGMRELNTTGYMHNRVRMITASFLTKHLLIDWRWGEAYFAKKLLD 352
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
++LASNNGNWQW+A +G +QP+FRIFNP Q KKFD +I+K++P+
Sbjct: 353 YELASNNGNWQWAAGTGTDAQPYFRIFNPASQVKKFDKDLAYIKKWVPEYGT-------- 404
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP P+++H L+++ L+ Y
Sbjct: 405 -----------------DQYPAPMIDHKLARERALETY 425
>gi|343084950|ref|YP_004774245.1| DNA photolyase FAD-binding protein [Cyclobacterium marinum DSM 745]
gi|342353484|gb|AEL26014.1| DNA photolyase FAD-binding protein [Cyclobacterium marinum DSM 745]
Length = 434
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 183/458 (39%), Positives = 267/458 (58%), Gaps = 61/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD+NIL+ L ++ D R++FI + +L L++YDS ++++ +
Sbjct: 31 VLPLFIFDENILEKLENKN---DARVQFIHNQVKKLHSALKDYDSSILVKIGKPLAIFEA 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L I V N DYEP A RD+ I++ L F+ +KDQVIFEK+EI N +G Y
Sbjct: 88 LTKAYAIQNVYTNRDYEPYARDRDEKIEQFLAEKDIPFYDFKDQVIFEKDEITNNSGSYY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y K W++K+K PV L+ S +K + SL DLGF S
Sbjct: 148 KVFTPYSKSWLQKLKQTTLT----PVD--LDGRKKS--FYKTQPFPLPSLKDLGFKTSEN 199
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
S ++ K I+ Y+ NR++P+ GTS L IHLRFGTISIR+LV
Sbjct: 200 SIPPLEIDE-----------KLIRAYDKNRDFPARQGTSRLGIHLRFGTISIRRLVS--- 245
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ H D T+L++LIWR+FY MILY P +V+ SFK++YD I W+++ ++
Sbjct: 246 ---EAHELND-----TYLNELIWREFYMMILYHNPALVDTSFKEKYDRIRWDNN---EEL 294
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYPL+D+ + +LN++GYMHNR+RM+TASFL K++ I+W+WGE YFA+KL D
Sbjct: 295 FQKWCEGKTGYPLVDAGMRELNTTGYMHNRVRMLTASFLTKHLLIDWRWGEAYFASKLLD 354
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
++LASNNG WQW+A +G +QP+FRIFNP Q KKFD +I+K++P+ +
Sbjct: 355 YELASNNGGWQWAAGTGTDAQPYFRIFNPESQMKKFDKDKKYIKKWIPEYGSSA------ 408
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YPKPI+EH +++ L+ Y
Sbjct: 409 -------------------YPKPIVEHKQARERALETY 427
>gi|392963663|ref|ZP_10329087.1| Deoxyribodipyrimidine photo-lyase [Fibrisoma limi BUZ 3]
gi|387847626|emb|CCH51126.1| Deoxyribodipyrimidine photo-lyase [Fibrisoma limi BUZ 3]
Length = 444
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 172/468 (36%), Positives = 267/468 (57%), Gaps = 61/468 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F++D+ ILD L + +DRR+EFI + I +L L S +I RY +K+
Sbjct: 37 VLPIFVYDRLILDQLEDR---DDRRVEFIHREIQQLQAQLHQMGSTIIARYGRPIDVLKQ 93
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+V + + V N+DYE A RD ++K L G F ++KDQ IF+++E+L GKPY
Sbjct: 94 VVEEFAVADVYTNYDYEVYAKERDAVVKAMLAERGIGFHTFKDQAIFDRDEVLTGGGKPY 153
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y + WI K+ N Y++SYP ++Y N V +S +L D F L
Sbjct: 154 TVFTPYSRNWIGKL--NDFYVKSYPTETYFANFVKTS-----------ALGDHDFTIPTL 200
Query: 183 SSLGIKT-GASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ + G S +++ + ++NY RN P+ GTS L IHLRFGTISIR LV+
Sbjct: 201 EEMNFRPKGESYPVPTVDDDL--LQNYEEMRNIPAQPGTSELGIHLRFGTISIRDLVRQA 258
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
++ +L++L WRDFY IL +P+V +F++EY+NI + + +
Sbjct: 259 QATSER-----------FLTELAWRDFYFQILDHFPHVEKHAFRREYENIPFLN---RAE 304
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+ W G TGYP++D+ + QLN +G+MHNR+R+V ASF +K++ I+W+ GE YFA KL
Sbjct: 305 DIERWQNGETGYPIVDAGMRQLNETGWMHNRVRLVVASFCVKHLLIDWRIGEAYFARKLR 364
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+DLA+NNGNWQW A +G + P+FR+FNP Q++KFD +GI+IR+++P+ L
Sbjct: 365 DYDLAANNGNWQWIAGTGNDAAPYFRVFNPAEQARKFDPKGIYIRRWVPEFDSL------ 418
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNR 469
YP+PI++H ++++ + Y K LNR
Sbjct: 419 -------------------RYPQPIVDHPMARQRAIDTY---KKALNR 444
>gi|284034972|ref|YP_003384902.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
gi|283814265|gb|ADB36103.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
Length = 438
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 172/459 (37%), Positives = 261/459 (56%), Gaps = 61/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD+ ILD L + DRR+EF+ + + L L S +I+RY K+
Sbjct: 32 VIPVFIFDRVILDALDDR---LDRRVEFLVQEVNRLHDELAKLGSTIIVRYGKPVDVWKE 88
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ I V NHDYE A RDK I + L G F + KDQ IFE++E+L+ PY
Sbjct: 89 LIETYTIGDVFTNHDYEGYAKERDKAIGELLAERGIGFHTSKDQAIFERDEVLSGKKTPY 148
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y +KW + + YL+SYP ++Y SS + I+L D+GF
Sbjct: 149 TVFTPYSRKWKDTL--TDFYLKSYPTENY------SSHYWQTKPEPAITLADMGF----- 195
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSI-NGTSYLSIHLRFGTISIRKLVKLI 241
+G A L + YN R++P++ + TS LSIHLRFGTISIR+L +
Sbjct: 196 QPVGEPFPAETVSDKL------LDTYNETRDFPALPHSTSQLSIHLRFGTISIRELAR-- 247
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ T+L++L WRDFY +L +P+V SF++EYD I W ++ +
Sbjct: 248 --------QAKAADDQTFLNELCWRDFYFQVLDHFPHVEQYSFRREYDQIEWRNN---ED 296
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYP++D+ + QLN+ G+MHNR+RM+TASFL K++ I+W+WGE YF KL
Sbjct: 297 EFDKWCRGETGYPIVDAGMRQLNTIGWMHNRVRMITASFLCKHLLIDWRWGEAYFGKKLR 356
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+DL++NNG WQW+A SG + P+FR+FNP Q+++FD + ++IR+++P++ K S
Sbjct: 357 DYDLSANNGGWQWAAGSGTDAAPYFRVFNPTAQAQRFDPKSVYIRQWVPEVDKPS----- 411
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YPKP+++H+++++ + Y
Sbjct: 412 --------------------YPKPMVDHAMARQRAIDTY 430
>gi|372210250|ref|ZP_09498052.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium S85]
Length = 428
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/459 (37%), Positives = 267/459 (58%), Gaps = 69/459 (15%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD++ILD L I+D R+ FI+K++ + L+ + S L++ + ++
Sbjct: 31 VLPIFIFDEHILDELP----IKDARVTFIYKALAAIDKELKKHQSSLLVLQGKPEEVWQQ 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L I V N DYEP A+ RD+ I K K F+ +KDQVIFE+ EI+ + G PY
Sbjct: 87 LFKDYQIQEVFTNKDYEPYALNRDRAIYKLTKEHQAAFYRFKDQVIFEEKEIVKEDGNPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y+KKWI K K+N + + +N +H + L+D+GF ++
Sbjct: 147 TVYTPYKKKWINKFKNNTLTVS----ECSFSNFLH-------FEASFPKLSDIGFQET-- 193
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+I L F K I+NY NR+YP+ N T+++ +HLRFGT+SIRK+V
Sbjct: 194 ------------EIELPEFSPKNIQNYGDNRDYPAKNHTTHIGVHLRFGTVSIRKIV--- 238
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + D +LS+LIWR+F+ IL+ +P V +F+ +YD I W ++ +K
Sbjct: 239 ---VDYGKQNDI-----YLSELIWREFFMQILFHFPKVQQHNFRAKYDAIPWRNN---EK 287
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC G TGYP++D+ + +LN++GYMHNR+RM+ ASFL K++ I+WKWGE YFA KL
Sbjct: 288 EFQKWCDGQTGYPMVDAGMRELNTTGYMHNRVRMIVASFLCKHLLIDWKWGEAYFAQKLL 347
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D++LA+NNGNWQW+A +GC + P+FR+FNP Q +KFD +I+K++P+L+
Sbjct: 348 DYELAANNGNWQWAAGTGCDAAPYFRVFNPTTQIEKFDKNNEYIKKWIPELN-------- 399
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
NYPKP+++H ++++ + Y
Sbjct: 400 -----------------DSNYPKPMVDHKMARERAISTY 421
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 157/460 (34%), Positives = 251/460 (54%), Gaps = 24/460 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD IL R + R +F+ + L L+ + L++R + +
Sbjct: 29 VVPVFIFDDAIL---RGR-FASPARTQFLLDCLAALDAELRTFGLHLVVRRGDPLRTLFD 84
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
++ + V N DY P A+ RD IK+ L+ G + S+KD VIFE E+ G+PY
Sbjct: 85 VLRESGASGVTWNRDYTPYAVRRDTAIKQALREAGYEAHSFKDTVIFEMKEVATADGRPY 144
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y K+W ++ + +Q P + + ++ + L DL +
Sbjct: 145 TVYTPYAKRWRSRLAAEPVTVQDMP---------RLATIPLPVSEPLPHLTDL-LPDAPA 194
Query: 183 SSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ G + A L F++ + +Y R+ ++ GTS LS +LR G +S R+ V
Sbjct: 195 TLPRFPAGEAVALEALERFVRGPLASYAQGRDLMAVAGTSRLSPYLRLGVLSPRQCVAAA 254
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+W+ +LIWRDFY +LY +P+ + SFK Y+ I W +D
Sbjct: 255 LAAPPGPGPE------SWIGELIWRDFYVQVLYHFPHALRGSFKPAYNRIDWPNDPVL-- 306
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W +G TGYP++D+A+ QL G+MHNR RM+ ASFL K++ I+W+WGE +F + L
Sbjct: 307 -FAAWQQGLTGYPIVDAAMRQLQREGWMHNRARMIVASFLTKDLLIDWRWGERHFMHLLI 365
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D D A+NNG WQW+A +G +QPFFRIFNP+ Q +KFD +G ++R+Y+P+L + +YIH
Sbjct: 366 DGDPAANNGGWQWAAGTGTDAQPFFRIFNPVSQGQKFDPEGAYVRRYVPELVNVPTRYIH 425
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
P K S + KAG+++G++YP PI++H+ + L+ Y
Sbjct: 426 EPHKMSLAEQRKAGVLIGRDYPAPIVDHATQRTKALELYR 465
>gi|85816726|gb|EAQ37912.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis
MED134]
Length = 436
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 174/459 (37%), Positives = 266/459 (57%), Gaps = 61/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-NYDSDLIIRYAIASKEIK 61
V +FIFDK ILD L +D R+ FI+ + ++ LQ +DS L + Y+ + K
Sbjct: 33 VLPIFIFDKEILDKLPE----DDARVTFIYNELQKMRDTLQAEHDSSLAMFYSTPEQIFK 88
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L+ ++ AV+ N DYEP A+ RDK I L+ F ++KDQVIFEK+EI+ G P
Sbjct: 89 ELIADYDVQAVITNRDYEPYALERDKKIASLLEENDISFTTFKDQVIFEKDEIVKGDGDP 148
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ ++ KW +K + Y YL+NL+ S+L + +L D+GF KS+
Sbjct: 149 YVVYTPFKNKWKATFDEDKDLIIHY-TSQYLDNLIDHSRLPNV------TLVDMGFKKSS 201
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ + I+NY RN+P+ +GTS L HLRFGT+S+RK+VK
Sbjct: 202 IEVPDYDVTPT-----------LIENYEDTRNFPAQDGTSRLGPHLRFGTVSVRKMVK-- 248
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K +T+ + + S+LIWR+F+ ILY +P+ +K+F+ +YD I W ++ ++
Sbjct: 249 ----KAIAQTNEVFW----SELIWREFFMQILYHFPHTKDKAFRSKYDRIDWRNN---EE 297
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W G TGY L+D+ + +LN++GYMHNR+RM+TASFL K++ I+W+WGE YFA KL
Sbjct: 298 EFEKWKNGQTGYALVDAGMRELNATGYMHNRVRMLTASFLCKHLLIDWRWGETYFAEKLL 357
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+D++SN GNWQW+A SG + P+FRIFNP+ Q KFD Q +I K++P+L +LS
Sbjct: 358 DYDMSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKQKEYINKWVPELQELS----- 412
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP +++H +++ LK Y
Sbjct: 413 --------------------YPDKMVDHKEARERCLKTY 431
>gi|379731644|ref|YP_005323840.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
gi|378577255|gb|AFC26256.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
Length = 445
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 182/475 (38%), Positives = 268/475 (56%), Gaps = 68/475 (14%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD+NIL+ L ++ +D R++FI + + L L+ SDL++ Y +
Sbjct: 30 VLSIFIFDQNILEDLNNR---QDARVDFIHQELQRLQKELRELGSDLLVLYGRPQAVWTQ 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ +I+ V N DYEP A RD I + L+ + KD VIFE+ E+ KT PY
Sbjct: 87 LLQDWSIEKVYTNRDYEPYAKKRDAAIAELLQKENIPLLTKKDHVIFEELEVEKKTSGPY 146
Query: 123 SIFSFYQKKWIEKVKSNKC------YLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
++F+ Y K+W K+ S K YLQSYP ++Y N N I SL +G
Sbjct: 147 TVFTPYSKQWKAKLDSKKTAAGESFYLQSYPNENYQQNYASLPG-----NFEIPSLESMG 201
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSIN-GTSYLSIHLRFGTISIR 235
F S L+ +++L K+IK Y RN+P++ GTS L +H RFGTISIR
Sbjct: 202 FAPSQLNF--------PSRLLKQ---KRIKKYEETRNFPALEEGTSRLGLHFRFGTISIR 250
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + K K + T+L++LIWRDFY IL +P VV +SF+ +YD I W +
Sbjct: 251 EKAR-------KARKLNA----TYLNELIWRDFYAQILANFPKVVGQSFRPQYDQIEWRN 299
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ ++ F WC+G TGYPL+D+ + +LN++GYMHNR+RM+ ASFL K++ I+W+WGE Y
Sbjct: 300 N---EEEFEAWCQGKTGYPLVDAGMRELNATGYMHNRVRMLVASFLCKHLLIDWRWGEAY 356
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA KL DFDLASNNG WQW+A SG + P+FRIF+P Q KKFD + +++K++ +
Sbjct: 357 FAEKLLDFDLASNNGGWQWAAGSGTDAAPYFRIFSPESQLKKFDAELKYVKKWVKEYG-- 414
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+ YP+PI+EH +++ L Y K+ LN++
Sbjct: 415 -----------------------SRRYPQPIVEHKFARQRCLATY---KSALNQD 443
>gi|399029602|ref|ZP_10730423.1| deoxyribodipyrimidine photolyase [Flavobacterium sp. CF136]
gi|398072566|gb|EJL63778.1| deoxyribodipyrimidine photolyase [Flavobacterium sp. CF136]
Length = 431
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 177/437 (40%), Positives = 260/437 (59%), Gaps = 41/437 (9%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD++ILD L D R+ FI+ S+ +++ L DS ++I+ ++ K
Sbjct: 33 VIPLFIFDEDILDHLPKN----DARVSFIYDSLEKINEQLSAIDSSILIKKGKTAEVWKS 88
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + +I V N DYEP AI RD+ I L+ + SYKD VIFE+ EI G PY
Sbjct: 89 LLTEFDIQKVFFNKDYEPYAIKRDQEIDALLQQNNIESLSYKDHVIFEEKEITKSDGLPY 148
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y+ KW+EK + +Q Y K + N + L++ GF +S +
Sbjct: 149 TVYTPYKNKWLEKYHLSGT-VQEYDTKPHFLNFAKNQ-------FQFPKLSETGFERSTI 200
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
K+ N + +I NY R++P+++ TSYLS HLRFGT+SIRKL+
Sbjct: 201 ------------KVFPYN-LTQIANYKETRDFPALDSTSYLSPHLRFGTVSIRKLINW-- 245
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ K T+LS+LIWR+F+ IL+ +P VV+ +FK YD I W ++ + +
Sbjct: 246 ----ANGKNQ-----TFLSELIWREFFIQILFNFPKVVDHNFKSAYDGIQWRNN---EDD 293
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC G TGYP++D+ + QLN +GYMHNR+RMV ASFL K++ INW+WGE YFA KL D
Sbjct: 294 FKRWCSGTTGYPMVDAGMRQLNETGYMHNRVRMVVASFLCKHLLINWQWGEAYFAEKLLD 353
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI-- 420
F+LASN GNWQW+A +GC + P+FR+FNP IQ KKFD +GI+IRK++P+ N +
Sbjct: 354 FELASNVGNWQWAAGTGCDAAPYFRVFNPEIQQKKFDEKGIYIRKWIPEFDLGYNGPMID 413
Query: 421 HSPWKASSYKLEKAGII 437
H+ + + KAGI+
Sbjct: 414 HAFARDRAIAAYKAGIV 430
>gi|86141641|ref|ZP_01060187.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
blandensis MED217]
gi|85832200|gb|EAQ50655.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
blandensis MED217]
Length = 434
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 176/459 (38%), Positives = 263/459 (57%), Gaps = 61/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI-K 61
V +FIFDK IL+ L +D R+ FIF+++ ++ LQ I Y S+ I K
Sbjct: 31 VLPIFIFDKEILNELPE----DDARVTFIFETLQKMRDELQEKHGSSIALYHGKSETIWK 86
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L+ +D V NHDYEP A+ RDK IKK L+ F ++KDQVIFEK+E++ G P
Sbjct: 87 QLLEDYKVDTVFTNHDYEPYALERDKKIKKLLEDQEVSFETFKDQVIFEKDEVVKGDGDP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y+ KW E ++K +L+ + YL NL+ S+L I SL+D+GF KS+
Sbjct: 147 YVVYTPYKNKWQEVFDADK-HLKIHYTSQYLENLIEHSRLPNI------SLSDMGFKKSS 199
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ + + I+NY RN+P+ +GTS+L HLRFGT+S+RK+VK
Sbjct: 200 IEIPDYEVTPT-----------LIQNYEDTRNFPAQDGTSHLGPHLRFGTVSVRKMVK-- 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K + S+LIWR+F+ ILY YP VN +F+ +YD I W ++ K+
Sbjct: 247 --------KAIAEKNTVFWSELIWREFFMQILYHYPETVNNAFRSKYDRIEWRNN---KE 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W KG TGY L+D+ + QLN +GYMHNR+RM+ ASFL K++ I+W+WGE YFA KL
Sbjct: 296 EFEKWKKGETGYLLVDAGMRQLNKTGYMHNRVRMLVASFLCKHLLIDWRWGEAYFAEKLL 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D++ +SN GNWQW+A SG + P+FRIFNP+ Q KFD +I++++P+
Sbjct: 356 DYEQSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKDKKYIKEFVPEFDT------- 408
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+YP+ +++H +++ L+ Y
Sbjct: 409 ------------------DDYPEKMVDHKEARERCLETY 429
>gi|374598111|ref|ZP_09671113.1| DNA photolyase FAD-binding [Myroides odoratus DSM 2801]
gi|423323552|ref|ZP_17301394.1| hypothetical protein HMPREF9716_00751 [Myroides odoratimimus CIP
103059]
gi|373909581|gb|EHQ41430.1| DNA photolyase FAD-binding [Myroides odoratus DSM 2801]
gi|404609317|gb|EKB08700.1| hypothetical protein HMPREF9716_00751 [Myroides odoratimimus CIP
103059]
Length = 434
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 169/455 (37%), Positives = 255/455 (56%), Gaps = 59/455 (12%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL +Q EDRRI +I++++ ++ +LQ +S ++ + K+
Sbjct: 31 VLPIFIFDPAILAQFPAQ---EDRRIPYIYQALAQVDSHLQQLNSQVVCYHDHVLDVFKQ 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ I AV N DYEP A RD ++ + F++YKDQVIFE NE+L PY
Sbjct: 88 LIETHAIAAVYTNADYEPAARKRDAAVQALVAEHAIAFYAYKDQVIFEANELLKSDQTPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ Y + W ++ + +K+ + + K H+++ SL LG+ +
Sbjct: 148 KVYTPYARLWRSRLTEQHLLAWTLELKA---DYFVAQKEHQVMP----SLTQLGYKEETK 200
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
S + ++F+ I+NY NR++P+++ T+ L I LRFGT+SIR V+
Sbjct: 201 SRFEAP--------VFDSFL--IQNYTANRDFPALDATTRLGIALRFGTVSIRACVR--- 247
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + D TWLSQLIWRDF+ ILY YP+ FK+EY+NI W ++ +
Sbjct: 248 ---QALHDND-----TWLSQLIWRDFFMAILYHYPHSARACFKREYENIQWRNN---EVE 296
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WCKG TGYPL+D+ + +LN +GYMHNR+RMV ASFL+K++ I+W+WGE YFA +LND
Sbjct: 297 FEAWCKGETGYPLVDAGMRELNQTGYMHNRVRMVVASFLVKHLLIDWRWGEAYFAQQLND 356
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+DLA N GNWQW+A GC + P+FR+FNP Q KKFD +I+K++PQ +
Sbjct: 357 YDLALNVGNWQWAAGCGCDAAPYFRVFNPTEQQKKFDKDFNYIKKWIPQYDE-------- 408
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
Y PI+EH L+++ L
Sbjct: 409 -----------------STYITPIVEHKLARERAL 426
>gi|227538334|ref|ZP_03968383.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241849|gb|EEI91864.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium
spiritivorum ATCC 33300]
Length = 437
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 177/459 (38%), Positives = 265/459 (57%), Gaps = 62/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD IL L D R+ FI++ + L L+ Y S + Y + ++
Sbjct: 33 VQPVFIFDSTILTRLDDPA---DARVTFIYQQLQLLQEQLKPYGSSIKTYYGDPATVWEE 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ + AV +N DYEP AI RD LI+ L+ F ++KDQVIFEK+EI+ G PY
Sbjct: 90 IYEEYKPAAVYVNSDYEPAAITRDLLIQGILQQYEVDFLTFKDQVIFEKDEIVKNDGLPY 149
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y+ KW+ ++ K L SY ++ LNNL + + + SL DLGF +L
Sbjct: 150 TVYTPYKNKWLTTLE-EKLPLPSYNSENLLNNLRQA-------DYTLPSLQDLGF---SL 198
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSI-NGTSYLSIHLRFGTISIRKLVKLI 241
S++ F I +Y R+ PS+ NGTS+L +HLRFGTISIRKLV+
Sbjct: 199 STIPFPE---------KTFFTGIADYADTRDIPSLENGTSHLGVHLRFGTISIRKLVERA 249
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ K T+L +L+WR+F+ M L+ +P+ VN+++ +YD+I WE++
Sbjct: 250 YPSQNK----------TYLHELVWREFFMMCLWHFPHTVNQAYYSKYDHIRWENN---LA 296
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC G TGYPL+D+ + +LN++G+MHNR+RM+TASFL K++ I+W+WGE YFA KL
Sbjct: 297 HFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTASFLCKHLLIDWRWGEAYFAQKLL 356
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+D ++N GNWQW+A G + P+FRIFNP IQ+KKFD + ++I+K++P+ S
Sbjct: 357 DYDQSANIGNWQWAAGCGMDAAPYFRIFNPTIQTKKFDPKFVYIKKWVPEFQDFS----- 411
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP PI+EH+ ++ L RY
Sbjct: 412 --------------------YPSPIVEHAWARDRALARY 430
>gi|255531982|ref|YP_003092354.1| deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366]
gi|255344966|gb|ACU04292.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366]
Length = 434
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/458 (38%), Positives = 267/458 (58%), Gaps = 63/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD+NIL L G +DRR+++I +++++++ L+ + L + +
Sbjct: 32 VLPIFIFDENILGKL---GDKKDRRVDYIDQALLKINTQLKLSKTRLNTFHGNPIEIFNM 88
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + AV N DYEP I RD I + K F ++KDQVIF+K+++L G PY
Sbjct: 89 LSEQYAVQAVFCNRDYEPLTIQRDVEIYEFFKRNQIPFKAFKDQVIFDKSDVLKNDGTPY 148
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y KKW E +K Y +P NN I SLND+GF K+++
Sbjct: 149 TVYTPYSKKWKELLKEEH-YRSYHPD---YNNFFRQE------FTGIHSLNDIGFEKTDI 198
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ +T I I Y+ R+YP++ T+ L I LRFGTISIRK V
Sbjct: 199 A---FETPKLTTTI--------IDEYDKYRDYPAMQRTTQLGIALRFGTISIRKCVA--- 244
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
F KH +T WL++LIWR+F+ ILY +P VV++SFK +YDNI W ++ +
Sbjct: 245 -FGLKHNQT-------WLNELIWREFFMQILYHFPKVVDQSFKSKYDNIKWRNNEH---E 293
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYP++D+ + QLN +G+MHNR+RM+ ASFL K++ I+W+WGE YFA KLND
Sbjct: 294 FDRWCEGKTGYPIVDAGMRQLNQTGFMHNRVRMIAASFLCKHLLIDWRWGEAYFAQKLND 353
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+DL++NNGNWQW++ SGC S P+FR+FNP +Q++KFD +++K++P+
Sbjct: 354 YDLSANNGNWQWASGSGCDSAPYFRVFNPTLQTEKFDKNFAYLKKWIPEFET-------- 405
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+NYP+PI+EHS +++ LK Y
Sbjct: 406 -----------------ENYPEPIVEHSFARERALKTY 426
>gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
Length = 486
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 175/467 (37%), Positives = 249/467 (53%), Gaps = 25/467 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFI D IL G + I + L +LQ S LI+R+ E+++
Sbjct: 30 VIPVFILDDTIL----HDGYVGAALIAVTLAMLEALDHDLQQRGSRLIVRHGQPLAELQR 85
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT-GKP 121
LV + V N DY P AI RD +K L+ G + S+ D V+ E + KT KP
Sbjct: 86 LVSETQASGVYWNRDYLPYAIKRDSAVKHWLREQGLQAHSFHDSVLVEPEGLKTKTEQKP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y ++ Y K+W E L P K + S L + I SL DLGF
Sbjct: 146 YVVYGSYVKRWSELAYHQAEQLVPAPSKF----VAPPSDLASL---PIPSLADLGF---E 195
Query: 182 LSSLGIKTGASGAKILLNNFIKK-----IKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
L + G + A+ L F + + Y R P+ GTS LS+ LR GTISIR+
Sbjct: 196 LQQTIPQVGETIAQQRLAQFFDRRQKLSVLKYTKAREVPAEAGTSQLSVDLRMGTISIRQ 255
Query: 237 LVKLIFKFIKKHYKTDC-IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+K + + + G TWL +L WRD+Y ++Y P ++N S YD I+W +
Sbjct: 256 CLKQAVDLLTEPLNAEQRQGVDTWLKELAWRDYYTQLIYHNPYMLNGSLDPRYDQIIWRN 315
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
D FL W +G TGYP++D+ QLN +MHNR+RM++ASFLIK++ I+W+WGE Y
Sbjct: 316 D---PSEFLAWQQGQTGYPIVDAGQRQLNQMAWMHNRVRMISASFLIKDLLIDWRWGERY 372
Query: 356 FANKLNDFDLASNNGNWQWSA-SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
F +L D D +NNG WQW+A SSG S+QP+FRIFNPI QSKK D G +IR+++P+L+
Sbjct: 373 FMQQLCDGDPTANNGGWQWAAGSSGPSAQPYFRIFNPIAQSKKHDPDGQYIRRFVPELAN 432
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ + YIH PW G ++G++YP P++EHS +++ L Y
Sbjct: 433 VPDHYIHEPWTMPPAVQAHVGCVIGRDYPAPLVEHSFARERALAAYR 479
>gi|300774220|ref|ZP_07084087.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300758899|gb|EFK55728.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 437
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 176/459 (38%), Positives = 261/459 (56%), Gaps = 62/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD IL L D R+ FI++ + L L+ Y S + Y + ++
Sbjct: 33 VQPVFIFDSTILTRLDDPA---DARVTFIYQQLQLLQEQLKPYGSSIRTYYGEPATVWEE 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ + AV +N DYEP AI RD L++ L+ F ++KDQVIFEK EI+ G PY
Sbjct: 90 IYEEYTPTAVYVNSDYEPAAITRDLLVRGILQQYKVDFNTFKDQVIFEKAEIVKNDGLPY 149
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y+ KW+ ++ + L SY ++ L NL +S + SL DLGF +L
Sbjct: 150 TVYTPYKNKWLTTLE-EQLPLPSYTSENLLKNLRQASYA-------LPSLQDLGF---SL 198
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSI-NGTSYLSIHLRFGTISIRKLVKLI 241
S++ F I +Y R+ P + NGTS+L IHLRFGTISIRKLV+
Sbjct: 199 STIPFPE---------KTFFTAIADYADTRDIPGLENGTSHLGIHLRFGTISIRKLVERA 249
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ K T+L +LIWR+F+ M L+ +P+ VN ++ +YD+I WE++
Sbjct: 250 YPSQNK----------TYLHELIWREFFMMCLWHFPHTVNHAYYSKYDHIRWENN---VA 296
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC G TGYPL+D+ + +LN++G+MHNR+RM+TASFL K++ I+W+WGE YFA KL
Sbjct: 297 HFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTASFLCKHLLIDWRWGEAYFAQKLL 356
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+D ++N GNWQW+A G + P+FRIFNP +Q+KKFD Q ++I+K++P+ S
Sbjct: 357 DYDQSANIGNWQWAAGCGMDAAPYFRIFNPTLQTKKFDPQFVYIKKWVPEFQDFS----- 411
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP PI+EH+ ++ L RY
Sbjct: 412 --------------------YPPPIVEHAWARDRALARY 430
>gi|383763855|ref|YP_005442837.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384123|dbj|BAM00940.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 475
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/471 (33%), Positives = 254/471 (53%), Gaps = 34/471 (7%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
++ F+ D +L+ +RR F+F + L +L+ LI+R + +
Sbjct: 29 QIVPCFVLDPRLLN----SSYAGERRKAFLFSGLRVLDADLRRRGGRLIVRCGDPAAVLS 84
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L + AV DY P A RD+ + + L + I + +L G P
Sbjct: 85 RLAAESGACAVYAERDYSPYARCRDEAVARALPI---PLVLTDGLTIRRPDALLKDDGTP 141
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKL---HKIINNNIISLNDLGFC 178
Y++F+ Y ++W +SYP L ++L I+ I L
Sbjct: 142 YTVFTPYSRRW-----------RSYPPVGAHEILPAPARLAVPESIVGEPIPKQPHL--- 187
Query: 179 KSNLSSLGIKTGASGAKILLNNFI----KKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
+ + +G + A+ L F I Y R++P ++ TS LS +LRFG +S
Sbjct: 188 --DDDTGPFPSGEAEAQARLRRFTTGDEAPIYAYAQARDFPDLDSTSKLSPYLRFGMLSA 245
Query: 235 RKLVKLIFKFIKKHYKTDC-IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
R+ ++ + + G TWL++LIWRDFY ILY +P+V F++ YD I+W
Sbjct: 246 RQAALAAYQAMDAAANAEQRTGAETWLTELIWRDFYYSILYHFPHVARGCFQRAYDAIIW 305
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
E++ +F WC G TGYP ID+A+ QL ++G+MHNR RM ASFL+K++ I+W+WGE
Sbjct: 306 ENN---PTHFAAWCAGLTGYPFIDAAMRQLAATGWMHNRARMAVASFLVKDLLIDWRWGE 362
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
+F +L D DLA+NNG WQWSA G + P+FRIFNP Q +KFD +G++IR+++P+L
Sbjct: 363 KWFMQRLLDGDLAANNGGWQWSAGVGTDAAPYFRIFNPTAQGQKFDPRGVYIRRWVPELR 422
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ ++YIH PW+ + +AG I+G+NYP PI++H+++++ +L+ Y ++
Sbjct: 423 LVPDRYIHEPWRMPRSEQMRAGCIIGQNYPAPIVDHAVARQRVLEAYRRVR 473
>gi|326799093|ref|YP_004316912.1| deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
gi|326549857|gb|ADZ78242.1| Deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
Length = 437
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/459 (37%), Positives = 264/459 (57%), Gaps = 62/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD IL L + +D R+ FI + + ++ L+ S + + +K ++
Sbjct: 34 VQPVFIFDTAILSKLEDR---DDARVSFIHRELRAINKQLEQQSSGIAFYHDEPNKAWEE 90
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+V + + AV NHDYEP A RDK I L+ +++KDQVIFEK E+L G+PY
Sbjct: 91 IVKEFDPIAVYFNHDYEPYARKRDKEISDFLRQYHIAVYTFKDQVIFEKEEVLKSNGEPY 150
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ Y+ W+ ++ + +L++YP + +L L + I +L +LGF
Sbjct: 151 TVFTPYRNCWLAQL--GESHLKNYPSERHLAAL-------RSHWQTIPTLKELGFV---- 197
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSIN-GTSYLSIHLRFGTISIRKLVKLI 241
A+ ++ I +Y+ R+ P+ GTS+LS+HLRFGT+SIR L+K
Sbjct: 198 --------ATKQTFPSKSYKAVIGDYHQTRDIPADEKGTSHLSVHLRFGTVSIRSLIKDA 249
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ +K TWL++LIWR+FY MIL+ +P VNK+FK YD I W ++ +
Sbjct: 250 RQASEK----------TWLNELIWREFYMMILWHFPETVNKAFKSAYDRIHWRNN---ES 296
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYPL+D+ + QLN +G+MHNR+RMV ASFL K++ I+W+WGE YFA KL
Sbjct: 297 EFDAWCQGKTGYPLVDAGMRQLNETGFMHNRVRMVVASFLCKHLLIDWRWGEAYFARKLQ 356
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D++ +SN GNWQW+A SG + P+FR+FNP IQ KKFD + ++ ++++P+L
Sbjct: 357 DYEQSSNVGNWQWAAGSGNDAAPYFRVFNPEIQLKKFDPKLVYAKRWIPELD-------- 408
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
P++ YP PI+EH +++ L+ Y
Sbjct: 409 DPFR----------------YPSPIIEHKKARERALEVY 431
>gi|365960525|ref|YP_004942092.1| deoxyribodipyrimidine photo-lyase [Flavobacterium columnare ATCC
49512]
gi|365737206|gb|AEW86299.1| deoxyribodipyrimidine photo-lyase [Flavobacterium columnare ATCC
49512]
Length = 428
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 185/464 (39%), Positives = 260/464 (56%), Gaps = 68/464 (14%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL+ L D R+ FI + + ++ L+ + L I Y + +
Sbjct: 28 VLPIFIFDTTILNQLEKT----DARVSFIHEQLQYINRQLKAVNKSLAIFYGNPVEIFSE 83
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ K I+ V NHDYEP A RDK I + LK F + KDQVIFEK EIL PY
Sbjct: 84 LITKHKIENVYTNHDYEPAARKRDKAINELLKSHQVAFKTCKDQVIFEKTEILKNNQTPY 143
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKL-HKIINNN--IISLNDLGFCK 179
+++ Y KKW E + N L YP S KL HKII +N +SL D+ F
Sbjct: 144 VVYTSYSKKWKENL--NTIQLPYYP----------SEKLIHKIIPHNYPFLSLKDISFKP 191
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
+ + + K S A I +Y RNYPS+ GTS LSIHLRFGT+SIRKLV+
Sbjct: 192 TTI--VFPKYNISDALI---------THYEATRNYPSLPGTSLLSIHLRFGTLSIRKLVE 240
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ F T+L++LIWR+F+ IL+ +P+ V+KSFK +YD+I WE++
Sbjct: 241 YVRTFENP----------TFLNELIWREFFMQILWHFPHTVHKSFKDKYDHIPWENNELF 290
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
F WC+G TGYP +D+ + +LN++G+MHNR+RM+ ASFL K++ I+W+WGE YFA K
Sbjct: 291 ---FQKWCQGQTGYPFVDAGMRELNATGHMHNRVRMIVASFLCKHLLIDWRWGEAYFATK 347
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D++ +SN GNWQW+A SG + P+FRIFNP Q KKFD +I+K++P+L
Sbjct: 348 LLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDPNLQYIKKWIPELE------ 401
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
YPKP+++H ++++ L Y I
Sbjct: 402 -------------------TPQYPKPMVDHKIARERCLTTYKTI 426
>gi|373109790|ref|ZP_09524065.1| hypothetical protein HMPREF9712_01658 [Myroides odoratimimus CCUG
10230]
gi|423131442|ref|ZP_17119117.1| hypothetical protein HMPREF9714_02517 [Myroides odoratimimus CCUG
12901]
gi|423135189|ref|ZP_17122835.1| hypothetical protein HMPREF9715_02610 [Myroides odoratimimus CIP
101113]
gi|371641858|gb|EHO07437.1| hypothetical protein HMPREF9714_02517 [Myroides odoratimimus CCUG
12901]
gi|371643270|gb|EHO08826.1| hypothetical protein HMPREF9715_02610 [Myroides odoratimimus CIP
101113]
gi|371644136|gb|EHO09676.1| hypothetical protein HMPREF9712_01658 [Myroides odoratimimus CCUG
10230]
Length = 435
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 169/453 (37%), Positives = 258/453 (56%), Gaps = 62/453 (13%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
+FIFDK+IL+ + +EDRR+++I + + +++ L+ Y+S + ++ S+ ++L
Sbjct: 36 LFIFDKDILEQFSN---VEDRRVQYIHEQVGKINDELKKYNSSVQCYHSTVSEAFEQLAD 92
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
I AV N DYEPQAI RD+ + L+ F+ YKD VIF EIL + G Y ++
Sbjct: 93 NYLIKAVYSNEDYEPQAIQRDQEVASFLQQKNILFYQYKDHVIFRGGEILKQDGTAYQVY 152
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ Y KKW + N + + ++ L H+ ++I+SL LG+ S
Sbjct: 153 TPYAKKWRSLLTENHLFDYTVALEKVL--------FHRF-QSDILSLEQLGYRPS----- 198
Query: 186 GIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
KI + + Y+ R+YPSI GTS L LRFGT+SIRK V++ K
Sbjct: 199 ------ENRKITNEVDLAIVSRYDQYRDYPSIKGTSLLGTALRFGTVSIRKCVRIALK-- 250
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN 305
+ D WLS+LIWR+F+ I+Y YP V FK +Y+ I + ++ + +FL
Sbjct: 251 ----END-----VWLSELIWREFFSQIMYLYPAVEKHCFKSKYEGIKYRNN---EADFLA 298
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
WC+G TGYPL+D+ + +LN++G+MHNR+RMV ASFL+K++ I+W+WGE YFA +L D+DL
Sbjct: 299 WCEGNTGYPLVDAGMRELNATGFMHNRVRMVVASFLVKHLLIDWRWGEAYFAQQLLDYDL 358
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASNNGNWQW A GC + P+FRIFNP Q+KKFD G ++ K++P+ +L
Sbjct: 359 ASNNGNWQWVAGCGCDAAPYFRIFNPTEQAKKFDKDGSYMDKWVPEWRELY--------- 409
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILK 458
Y +PI+EH +++ L+
Sbjct: 410 ----------------YRQPIVEHKFARERALE 426
>gi|163788107|ref|ZP_02182553.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
bacterium ALC-1]
gi|159876427|gb|EDP70485.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
bacterium ALC-1]
Length = 434
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 178/464 (38%), Positives = 259/464 (55%), Gaps = 62/464 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-NYDSDLIIRYAIASKEIK 61
V +FIFD IL L +D RI FI +++ + LQ NY S + + Y +
Sbjct: 32 VLPIFIFDSEILSKLPK----DDARITFIHETLQNIRQTLQDNYRSSIAMHYGKPKEVYT 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L+ NI++V NHDYEP A RD +K L +F +YKDQV+FEKNEI+ K G P
Sbjct: 88 QLIKDYNINSVYTNHDYEPYAKERDTEVKSVLAEHNIEFKTYKDQVVFEKNEIVKKDGAP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y + W EK K+ + Y K+Y N+ IN +SL+D+GF SN
Sbjct: 148 YKVYTPYMRSWKEKFKT--LDFKIYKTKAYFKNIFQE------INLPNLSLSDIGFETSN 199
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ + K I+NY RN+P+ N TS L HLRFGT+SIRK+VK
Sbjct: 200 QLIPPYEVSS-----------KLIQNYEATRNFPAQNSTSRLGPHLRFGTVSIRKMVK-- 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K +T+ I +L +LIWR+F+ IL+ +P+ +FK +YD I W ++ +
Sbjct: 247 ----KAITETNEI----FLHELIWREFFMQILWHFPHTAKDAFKPKYDRIEWRNN---EG 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYP +D+ + QLN +G+MHNR+RM+ SFL K++ I+W+WGE YFA KL+
Sbjct: 296 EFKAWCEGKTGYPFVDAGMRQLNETGFMHNRVRMLVGSFLCKHLLIDWRWGEAYFAEKLH 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+D++SN GNWQW A SG + P+FRIFNP Q KFD +I+K++P +L+
Sbjct: 356 DYDMSSNIGNWQWVAGSGVDAAPYFRIFNPTSQILKFDKNLEYIKKWVPDFQELT----- 410
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
YP+PI++H +++ LK Y + N
Sbjct: 411 --------------------YPQPIVDHKEARERCLKTYKYALN 434
>gi|395802067|ref|ZP_10481321.1| deoxyribodipyrimidine photo-lyase [Flavobacterium sp. F52]
gi|395435798|gb|EJG01738.1| deoxyribodipyrimidine photo-lyase [Flavobacterium sp. F52]
Length = 431
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 177/441 (40%), Positives = 257/441 (58%), Gaps = 49/441 (11%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD +ILD L D R+ FI+ S+ +++ L DS ++I+ K
Sbjct: 33 VVPLFIFDDDILDRLPKN----DARVTFIYDSLQKVNSELNKLDSSILIKKGKTKDVWKS 88
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ K +I +V N DYEP AI RD I LK + F YKD VIFE+ EI G PY
Sbjct: 89 LIEKFDIQSVFFNKDYEPFAIKRDTAITALLKENNIETFFYKDHVIFEEKEITKADGNPY 148
Query: 123 SIFSFYQKKWIEKV----KSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
++++ Y+ KW+EK + +C S P +S N + F
Sbjct: 149 TVYTPYKNKWLEKYHFLGSATEC--DSVPFQS---NFAKNK-----------------FT 186
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+L+ +G + S K+ +N + +I Y R++P+++ TSYLS HLRFGT+SIRKLV
Sbjct: 187 FPDLAEIGFER--SDIKVKPHN-LTQIAQYKETRDFPALDSTSYLSPHLRFGTVSIRKLV 243
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ + T+LS+LIWR+F+ IL+ +PN VN +FK YD I W ++
Sbjct: 244 NWANRKNQ-----------TFLSELIWREFFIQILFSFPNCVNHNFKSNYDGIQWRNN-- 290
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ +F WC G TGYP++D+ + QLN +GYMHNR+RMV ASFL K++ I+W+WGE YFA
Sbjct: 291 -EDDFKRWCAGETGYPMVDAGVRQLNETGYMHNRVRMVVASFLCKHLLIDWRWGEAYFAE 349
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
KL DF+LASN GNWQW+A +GC + P+FR+FNP IQ +KFD +G +IRK++P+ N+
Sbjct: 350 KLLDFELASNVGNWQWAAGTGCDAAPYFRVFNPEIQQQKFDPKGEYIRKWIPEFDFGYNE 409
Query: 419 YI--HSPWKASSYKLEKAGII 437
+ H + + KAGI+
Sbjct: 410 PMIDHGFARDRAIATYKAGIL 430
>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
Length = 484
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 154/455 (33%), Positives = 257/455 (56%), Gaps = 13/455 (2%)
Query: 13 ILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAV 72
+ D L + D+R+ F +I L L L+IR + + +L + + +
Sbjct: 35 VEDSLCLSAAVGDKRLHAHFSAIAALDDALVQLGGRLLIRRGEPQQVLCQLAQETGAEKL 94
Query: 73 MINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKW 132
N DY P A RD+L+ + L G + KD V+ E EI+ K PY++F+ Y++ W
Sbjct: 95 FFNRDYTPDARKRDELVSEVLSRHGVFVHACKDLVLHEPGEIMTKQRTPYAVFTPYRRVW 154
Query: 133 IEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT-GA 191
+ + ++ + Q P + L + +L ++ + + ++ G + + ++ G
Sbjct: 155 -QTLPKDRPFPQ--PTEWILFD-----RLKELPSEPVPTVEAFGRNRPMGTEWEMEQFGE 206
Query: 192 SGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYK 250
A+ L F+ + I Y R+ P +N TS LS L GT+SIR + + + +
Sbjct: 207 RAARKRLQQFLDRDIYTYKEKRDMPGVNATSRLSFALNAGTLSIRTVYHRVQEVLASARG 266
Query: 251 TDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGY 310
+L++LIWR+FYQ +LY +P+ N ++ +++ + WE+ K F+ WC+G
Sbjct: 267 EQVTSIEAFLTELIWREFYQQVLYFHPHTTNHAYLPQFEEVAWENK---KDLFVRWCQGE 323
Query: 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNG 370
TGYP++D+A+ QLN +G+MHNRLRM+TASFL K++ ++W+WG YFA +L DFD A+N G
Sbjct: 324 TGYPIVDAAMKQLNETGWMHNRLRMITASFLTKDLLVDWRWGMAYFAQQLIDFDEAANIG 383
Query: 371 NWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYK 430
WQWSAS+G +QP+FRIFNP+ Q +KFD G+F++KYLP L ++ +YIH PW +
Sbjct: 384 GWQWSASTGTDAQPYFRIFNPVTQGEKFDRDGVFVKKYLPVLREVPLQYIHKPWDMPEHI 443
Query: 431 LEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
E+AG +G +YP P ++H+ +K + + K+
Sbjct: 444 QEQAGCKIGFDYPLPCVDHAQRRKLAMALFQEAKD 478
>gi|423327855|ref|ZP_17305663.1| hypothetical protein HMPREF9711_01237 [Myroides odoratimimus CCUG
3837]
gi|404605856|gb|EKB05427.1| hypothetical protein HMPREF9711_01237 [Myroides odoratimimus CCUG
3837]
Length = 435
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 168/453 (37%), Positives = 258/453 (56%), Gaps = 62/453 (13%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
+FIFDK+IL+ + +EDRR+++I + + +++ L+ Y+S + ++ S+ ++L
Sbjct: 36 LFIFDKDILEQFSN---VEDRRVQYIHEQVGKINDELKKYNSSVQCYHSTVSEAFEQLAD 92
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
I AV N DYEPQAI RD+ + L+ F+ YKD VIF EIL + G Y ++
Sbjct: 93 NYLIKAVYSNEDYEPQAIQRDQEVASFLQQKNILFYQYKDHVIFRGGEILKQDGTAYQVY 152
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ Y K+W + N + + ++ L H+ ++I+SL LG+ S
Sbjct: 153 TPYAKRWRSLLTENHLFDYTVALEKVL--------FHRF-QSDILSLEQLGYRPS----- 198
Query: 186 GIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
KI + + Y+ R+YPSI GTS L LRFGT+SIRK V++ K
Sbjct: 199 ------ENRKITNEVDLAIVSRYDQYRDYPSIKGTSLLGTALRFGTVSIRKCVRIALK-- 250
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN 305
+ D WLS+LIWR+F+ I+Y YP V FK +Y+ I + ++ + +FL
Sbjct: 251 ----END-----VWLSELIWREFFSQIMYLYPAVEKHCFKSKYEGIKYRNN---EADFLA 298
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
WC+G TGYPL+D+ + +LN++G+MHNR+RMV ASFL+K++ I+W+WGE YFA +L D+DL
Sbjct: 299 WCEGNTGYPLVDAGMRELNATGFMHNRVRMVVASFLVKHLLIDWRWGEAYFAQQLLDYDL 358
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASNNGNWQW A GC + P+FRIFNP Q+KKFD G ++ K++P+ +L
Sbjct: 359 ASNNGNWQWVAGCGCDAAPYFRIFNPTEQAKKFDKDGSYMDKWVPEWRELY--------- 409
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILK 458
Y +PI+EH +++ L+
Sbjct: 410 ----------------YRQPIVEHKFARERALE 426
>gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
Length = 481
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 159/460 (34%), Positives = 252/460 (54%), Gaps = 19/460 (4%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
E+ +F+FD+ +L RS + F+ + EL +L + L R + +
Sbjct: 28 EIVPLFVFDEPLL---RSHAF-GSACVGFMLGCLEELRRSLALHGVSLAWRMGDPVESVL 83
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+ +DAV N DYEP A+ RD+ +++ L G ++KD V+FE E+ +G P
Sbjct: 84 QAADDFKVDAVYWNRDYEPAALERDREVQQRLAQQGRTVRTFKDHVVFEAEEVRGLSGDP 143
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+ +S Y+ +W K ++ L P + + K + S+ DLG+
Sbjct: 144 FQRYSAYRDRWWTKWRAAAPPLLGIP------SFPPAGKASTPDSRKWPSVTDLGY---E 194
Query: 182 LSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ I+ G A L F++ + Y RN P+I+GTS LS HLRFGT+S R LV
Sbjct: 195 SVPMWIEPGEQAAHARLQWFLRGPVHQYVTGRNLPAIDGTSKLSPHLRFGTVSARTLVHA 254
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ K FTW+ +L+WR+F+Q +L +P+V + FK + L E
Sbjct: 255 ALNALAKGGAVSRADVFTWVDELVWREFFQQVLAAFPHVAHGPFKAKPG--LPEPRPAGP 312
Query: 301 KN---FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ F W +G TGYP++D+ + QLN +G+MHNR+RMV ASFL+K++ ++W+ GE YF
Sbjct: 313 ERDRLFAAWSQGLTGYPIVDAGMRQLNQTGWMHNRVRMVVASFLVKDLRVDWQSGERYFM 372
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+L D DLA+NNGNWQW AS+G + +RIFNP IQS+KFD +G ++R+Y+P+L +
Sbjct: 373 ERLVDGDLAANNGNWQWCASTGTDAMQGYRIFNPRIQSEKFDAEGEYLRRYVPELKHVPT 432
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
K+IH P + +AG +G +YP+PI++H +++ L
Sbjct: 433 KWIHEPHLMPPLEQVQAGCRIGSDYPEPIVDHRQARQEYL 472
>gi|408372276|ref|ZP_11170016.1| deoxyribodipyrimidine photo-lyase [Galbibacter sp. ck-I2-15]
gi|407742292|gb|EKF53899.1| deoxyribodipyrimidine photo-lyase [Galbibacter sp. ck-I2-15]
Length = 435
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 180/458 (39%), Positives = 262/458 (57%), Gaps = 63/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V+ +FIFD+ IL L + +DRR+++I + + ++ L+ +++ L Y S K
Sbjct: 32 VFPIFIFDETILKKLEDK---KDRRVDYIHQVLSAINNGLKTFNARLNTFYGNPSDVFKI 88
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L K I V N DYEPQAI RD I + F ++KDQVIF+KN+++ G PY
Sbjct: 89 LSEKYAIQGVFCNRDYEPQAIKRDSDIYQFFNERNTPFKAFKDQVIFDKNDVVKNDGTPY 148
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y KKW E ++ Y YP NN I LN+LGF K++
Sbjct: 149 TVYTPYSKKWKELLREEN-YKSYYPD---YNNFFRQE------FTEIPLLNELGFEKTDS 198
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ + K K I Y+ R+YP++ T+ L I LRFGTISIRK V
Sbjct: 199 TFVFPKLDP-----------KIIDEYDKFRDYPAMQRTTALGIGLRFGTISIRKCVA--- 244
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
F KH + WL++LIWR+F+ ILY +P VVN+SFK +YD I W ++ +
Sbjct: 245 -FALKHNQI-------WLNELIWREFFMQILYHFPKVVNQSFKSKYDTIKWRNNEW---E 293
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYP++D+ + QLN +G+MHNR+RM+ ASFL K++ I+W+WGE YFA KLND
Sbjct: 294 FEIWCEGKTGYPIVDAGMRQLNETGFMHNRVRMIVASFLCKHLLIDWRWGEAYFAQKLND 353
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+DL++NNGNWQW+A SGC S P+FR+FNP IQ+ KFD + +I+K++
Sbjct: 354 YDLSANNGNWQWAAGSGCDSAPYFRVFNPTIQTDKFDKKLEYIKKWV------------- 400
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
S +K + YPK ++EHS +++ LK Y
Sbjct: 401 ----SEFKTDA--------YPKKMVEHSFARERALKVY 426
>gi|332293614|ref|YP_004432223.1| deoxyribodipyrimidine photo-lyase [Krokinobacter sp. 4H-3-7-5]
gi|332171700|gb|AEE20955.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter sp. 4H-3-7-5]
Length = 465
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 172/461 (37%), Positives = 265/461 (57%), Gaps = 61/461 (13%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN-YDSDLIIRYAIASKE 59
+ V +FIFDK ILD L +D R+ FIF+++ ++ LQ+ + S L + Y K
Sbjct: 60 LPVLPIFIFDKEILDKLPK----DDARVTFIFETLQKMRSTLQDEHASSLAMYYDTPEKV 115
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
K+L I V N DYEP A RD++I LK +F ++KDQVIFEK+E++ G
Sbjct: 116 FKQLSKDFEIATVFTNRDYEPYAKERDEVISSLLKDNDIEFKTFKDQVIFEKDEVVKGDG 175
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
PY +++ ++ KW E+ ++K Y +LNNL+ S+L + SL+D+GF K
Sbjct: 176 DPYVVYTPFKNKWKERFDTDKDLTIHY-TSQHLNNLIEHSRLPNL------SLSDMGFEK 228
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
S++ + I+NY RN+P+ +GTS+L HLRFGT+S+RK++K
Sbjct: 229 SSIEVPEYDVTPT-----------LIQNYEDTRNFPAQDGTSHLGPHLRFGTVSVRKMMK 277
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
K +T+ I + S+LIWR+F+ IL+ +P+ +K+F+ +YD I W ++
Sbjct: 278 ------KAIAETNEIFW----SELIWREFFMQILFHFPHTKDKAFRSKYDRIEWRNN--- 324
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ F W G TGY L+D+ + +LN++GYMHNR+RM+ ASFL K++ I+W+WGE YFA K
Sbjct: 325 EDEFEKWKNGETGYLLVDAGMRELNTTGYMHNRVRMLVASFLCKHLLIDWRWGETYFAEK 384
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D++++SN GNWQW+A SG + P+FRIFNPI Q KFD Q +I K++P+
Sbjct: 385 LLDYEMSSNVGNWQWAAGSGVDAAPYFRIFNPITQVDKFDKQKEYISKWIPEHD------ 438
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
NYP+ +++H +++ LK Y
Sbjct: 439 -------------------TDNYPEKMVDHKEARERCLKTY 460
>gi|372221339|ref|ZP_09499760.1| deoxyribodipyrimidine photo-lyase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 436
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 180/460 (39%), Positives = 259/460 (56%), Gaps = 62/460 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN-YDSDLIIRYAIASKEIK 61
+ +FIFDK ILD L +D R+ FIF+++ ++ LQ+ DS L I Y K
Sbjct: 32 ILPIFIFDKEILDNLPK----DDARVTFIFETLQQMRKTLQDKVDSSLAIFYDTPKTVFK 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
KLV NI+ V NHDYEP A RD +K+ L+ G F ++KDQVIFEK+E++ G P
Sbjct: 88 KLVDDYNIETVFTNHDYEPYAKQRDTAVKEFLEDKGINFKTFKDQVIFEKDEVVKNDGDP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y KKW E +K L +Y + ++ V S+L + SL+D+GF KSN
Sbjct: 148 YVVYTPYMKKWKETFNPSKD-LVNYDSEKNFDSYVKHSRLPNL------SLSDMGFEKSN 200
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSI-NGTSYLSIHLRFGTISIRKLVKL 240
+ T I NY RNYP + NGTS L HLRFGT+S+RK+VK
Sbjct: 201 IEIPDYLTTQH-----------LIANYEDTRNYPYLKNGTSRLGPHLRFGTVSVRKMVK- 248
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
K T+ ++LIWR+F+ ILY YP VN +F+++YD I W ++ +
Sbjct: 249 ---------KATEEKNETFWNELIWREFFMQILYHYPKTVNNAFREKYDRINWRNN---E 296
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+ F W G TGY L+D+ + QLN +GYMHNR+RM+ ASFL K++ I+W+WGE YFA KL
Sbjct: 297 EEFEKWKAGKTGYALVDAGMRQLNKTGYMHNRVRMLVASFLCKHLLIDWRWGEAYFAEKL 356
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D+++ASN GNWQW+A SG + P+FRIFNP+ Q KFD +I +++ +++ S
Sbjct: 357 LDYEMASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKDKKYINRWVTDINEFS---- 412
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP +++H +++ LK Y
Sbjct: 413 ---------------------YPDKMVDHKEARERCLKVY 431
>gi|325285379|ref|YP_004261169.1| deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
gi|324320833|gb|ADY28298.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
Length = 429
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/463 (36%), Positives = 261/463 (56%), Gaps = 76/463 (16%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD+NIL+ L + +D R+ FI K+I +++ L+ Y+S ++ + KK
Sbjct: 32 VLPVFIFDENILNELDA----DDARVTFIHKTISAINLTLKEYNSGVLCLHTTPELAWKK 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+V N++ V N DYEP A RD+ I L K S KD VIFE+N++L G PY
Sbjct: 88 IVSTYNVERVFFNKDYEPYARERDQKITSFLNDKSIKVKSNKDSVIFEENDVLKNDGDPY 147
Query: 123 SIFSFYQKKWIEK-----VKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
++++ Y+ KW+ K ++ KC + ++ N + SL +LGF
Sbjct: 148 TVYTPYKNKWLSKFTPDLIEDKKCDFKGKLLE---------------FNVDFPSLENLGF 192
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
SN++ ++ + Y R++PS + T+YL HLRFGT+S+RKL
Sbjct: 193 SASNITVEPYN-------------LEHLDIYAEKRDFPSDDITTYLGPHLRFGTVSVRKL 239
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
++ + +LS+L+WR+F+ IL+ +P VV ++F+ +YD I W ++
Sbjct: 240 IRGLDGLES-----------VFLSELVWREFFTQILFHFPKVVTQNFRSKYDGIKWRNN- 287
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
K++F WC G TGYP++D+ + QLN +GYMHNR+RM+TA FL K++ I+W+WGE YFA
Sbjct: 288 --KEDFEKWCTGNTGYPMVDAGMRQLNKTGYMHNRVRMITAGFLCKHLLIDWQWGEAYFA 345
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D++LASNNGNWQW+A +GC + P+FRIFNPI Q KKFD +++ ++P+L
Sbjct: 346 KKLLDYELASNNGNWQWAAGTGCDAAPYFRIFNPITQLKKFDKDFKYVKHWIPELD---- 401
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
G NYP+P++EH +++ LK Y
Sbjct: 402 ---------------------GFNYPQPMVEHKAARERALKVY 423
>gi|398817002|ref|ZP_10575637.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
gi|398031514|gb|EJL24900.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
Length = 484
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/455 (33%), Positives = 256/455 (56%), Gaps = 13/455 (2%)
Query: 13 ILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAV 72
+ D L + D+R+ F +I L L L+IR+ + + +L + D +
Sbjct: 35 VEDSLCRSAAVGDKRLYAHFAAIAALGDALAQLGGRLLIRHGNPQQVLCQLAQETGADKL 94
Query: 73 MINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKW 132
+ N DY P+A RD+L+ + L G + KD ++ E EI+ K PY++F+ Y++ W
Sbjct: 95 LFNRDYAPEARKRDELVSEVLSSQGVVVHTCKDLILHEPGEIMTKQRTPYAVFTPYRRVW 154
Query: 133 IEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT-GA 191
+ + ++ + Q P + L + +L ++ + + ++ G + + ++ G
Sbjct: 155 -QTLPKDRPFPQ--PTRWNLFD-----RLKELASEPVPTVEAFGRKRPIGTEWEMEQFGE 206
Query: 192 SGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYK 250
A+ L F+ I Y R+ P +N TS LS L GT+SIR + + + + +
Sbjct: 207 RAAQKRLQQFLNGDIYTYKEKRDMPGVNATSRLSFALNTGTLSIRTVYHSVQEVLARARG 266
Query: 251 TDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGY 310
+L++LIWR+FYQ +LY +P+ + ++ +++ + WE+ K F WC G
Sbjct: 267 EQVTSIEAFLTELIWREFYQQVLYFHPHTTDHAYLPQFETVAWEN---RKDLFTRWCHGE 323
Query: 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNG 370
TGYP++D+A+ QLN +G+MHNRLRM+TASFL K++ ++W+WG YFA +L DFD A+N G
Sbjct: 324 TGYPIVDAAMKQLNETGWMHNRLRMITASFLTKDLLVDWRWGMAYFAQQLVDFDEAANIG 383
Query: 371 NWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYK 430
WQWSAS+G +QP+FRIFNP+ Q +KFD G F++KYLP L ++ +YIH PW
Sbjct: 384 GWQWSASTGTDAQPYFRIFNPVTQGEKFDPDGAFVKKYLPVLREVPLQYIHKPWDMPEQI 443
Query: 431 LEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
E+AG +G +YP P ++H+ +K + + K+
Sbjct: 444 QEQAGCKIGFDYPIPCVDHAQRRKLAMALFQEAKD 478
>gi|424843384|ref|ZP_18268009.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
gi|395321582|gb|EJF54503.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
Length = 445
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 264/475 (55%), Gaps = 68/475 (14%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD+NIL+ L ++ +D R+ FI + + L LQ SDL++ Y +
Sbjct: 30 VLSIFIFDQNILEDLNNR---QDARVSFIHQELQRLQKELQELGSDLLVLYGRPKAVWTQ 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ I+ V N D EP A RD + + L+ + KD VIFE E+ KT PY
Sbjct: 87 LLQDWPINKVYTNRDDEPYAKKRDAAVAELLQKENIPLLTEKDHVIFEALEVEKKTAGPY 146
Query: 123 SIFSFYQKKWIEKVKSNKC------YLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
++F+ Y K+W K+ S K YLQSYP ++Y N N I SL +G
Sbjct: 147 TVFTPYSKQWKAKLDSKKTATGESFYLQSYPNENYQQNYATLPG-----NFKIPSLESMG 201
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSIN-GTSYLSIHLRFGTISIR 235
F S L+ +++L K+IK Y R++P++ GTS L +H RFGTISIR
Sbjct: 202 FAPSQLNF--------PSRLLKQ---KRIKKYEETRDFPALEEGTSRLGLHFRFGTISIR 250
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + K K + T+L++LIWRDFY IL +P VV +SF+ +YD I W +
Sbjct: 251 EKAR-------KARKLNA----TYLNELIWRDFYAQILANFPKVVGQSFRPKYDLIEWRN 299
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ ++ F WC+G TGYPL+D+ + +LN++GYMHNR+RM+ ASFL K++ I+W+WGE Y
Sbjct: 300 N---EEEFEAWCQGKTGYPLVDAGMRELNATGYMHNRVRMLVASFLCKHLLIDWRWGEAY 356
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA KL DFDLASNNG WQW+A SG + P+FRIF+P Q KKFD + +++K++ +
Sbjct: 357 FAEKLLDFDLASNNGGWQWAAGSGTDAAPYFRIFSPESQLKKFDAELKYVKKWVKEYG-- 414
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+ YP+PI+EH +++ L Y K+ LN++
Sbjct: 415 -----------------------SRRYPQPIVEHKFARQRCLATY---KSALNQD 443
>gi|428218359|ref|YP_007102824.1| deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
gi|427990141|gb|AFY70396.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
Length = 489
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/470 (35%), Positives = 256/470 (54%), Gaps = 29/470 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
+FIFD IL+ +++F+ + EL Q+ SDL+ + +K I+ +
Sbjct: 41 IFIFDPQILESKAEDQTTGAGQVDFMLGCLQELQAAYQDLGSDLLFFHGDPAKTIRDIAQ 100
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
LN V N D EP A RD+ L IG + S+ D + + I +G PY ++
Sbjct: 101 TLNAARVFFNQDVEPFARERDRQACAALAEIGVEVKSFLDLALHAPDAISTNSGTPYKVY 160
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL---NDLGF-CKSN 181
+ + + WI K K Q P + L L + + I I+L DLGF C +
Sbjct: 161 TPFWRSWIAKAKP-----QPLPSPAKLVGLDGRTSESRSIEAKAIALPRLADLGFSCDQD 215
Query: 182 LSSLGIKTGASGAKILLNNFIK--KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
+ + GIK A+ L +F KI NY RN+P+ GTS LS HLRFGTI IR++ +
Sbjct: 216 IPTAGIKA----AEQCLQDFCDTNKIFNYQQERNFPANPGTSMLSPHLRFGTIGIRQVWQ 271
Query: 240 LIFKFIKKHYKTDC--IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+H ++D G TW +L WR+FYQ +L+ +P++ +++ + W+ D
Sbjct: 272 ATVA-ATEHIRSDEEKAGLQTWRQELAWREFYQHVLFHFPDLATGAYRSQMQVFEWDDD- 329
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ F WCKG TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 330 --EAKFAAWCKGETGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQWGERYFM 387
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D D A+NNG WQWSASSG +P RIFNP Q++K+D G +IR+++P+L+ L+
Sbjct: 388 EKLVDGDQAANNGGWQWSASSGMDPKP-LRIFNPASQARKYDKDGEYIRRWIPELAGLTT 446
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+ S + + ++ G YP PI++H++ ++ +RY K L
Sbjct: 447 AELLSG-NITPQQCKERG------YPMPIVDHAVQQREFKRRYGEAKESL 489
>gi|86134119|ref|ZP_01052701.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
MED152]
gi|85820982|gb|EAQ42129.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
MED152]
Length = 434
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 176/459 (38%), Positives = 258/459 (56%), Gaps = 62/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-NYDSDLIIRYAIASKEIK 61
V +FIFDK IL L +D R+ FI+ ++ E+ LQ NY S + + +
Sbjct: 32 VLPIFIFDKEILSKLPK----DDARVTFIYDTLQEMRGELQDNYGSSIAMFHGNPESVFS 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L+ IDAV N DYEP A RD+ I++ L +F ++KDQVIFEK+E++ K G P
Sbjct: 88 ELIKNYTIDAVFTNRDYEPYATKRDESIEQLLSENDIEFKTFKDQVIFEKDEVVKKDGDP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y K W E+ K K L+ Y L+NL+ +S+L + SL+D+GF KSN
Sbjct: 148 YKVYTPYMKLWKEQFK--KEDLKIYYTNDVLDNLIQNSRLPNL------SLSDIGFTKSN 199
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
T + L IK Y RN+P+ + TS+L HLRFGT+S+RK+VK
Sbjct: 200 QEI----TPYTVTPTL-------IKEYEDTRNFPAQDATSHLGPHLRFGTVSVRKMVK-- 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K + +LIWR+F+ IL+ +P+ +++FK +YD I W ++ ++
Sbjct: 247 --------KAMAESNEVFWQELIWREFFMQILWHFPHTKDEAFKSKYDRIEWRNN---ER 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WCKG TGYPL+D+ + QLN +G+MHNR+RM+ SFL K++ I+W+WGE YFA KL+
Sbjct: 296 EFKAWCKGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFLCKHLLIDWRWGEAYFAEKLH 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+++ASN GNWQW A SG + P+FRIFNP Q KKFD +I+K++ K S
Sbjct: 356 DYEMASNVGNWQWVAGSGVDASPYFRIFNPTTQIKKFDKDLKYIKKWVKDYEKSS----- 410
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YPK I++H +++ L Y
Sbjct: 411 --------------------YPKEIIDHKSARERCLTVY 429
>gi|149196503|ref|ZP_01873557.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa
HTCC2155]
gi|149140183|gb|EDM28582.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa
HTCC2155]
Length = 429
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 168/458 (36%), Positives = 259/458 (56%), Gaps = 62/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL L S+ D R+ FI + I EL ++ I Y KE K
Sbjct: 29 VRPIFIFDTKILKKLTSKN---DPRVSFIHQKIKELDHQIKAKGGSGIWVYYGDVKETWK 85
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+++ V N DYEP AI RD +++ L+ G S+KDQVIFE++E+L K G PY
Sbjct: 86 EILQSQTGDVYCNRDYEPAAIDRDHEVEQILRSHGQNLHSFKDQVIFEEDEVLKKDGTPY 145
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ Y+K W ++K + L+ +P S L N +S + I SL ++GF +
Sbjct: 146 TVYTPYRKAW--ELKFSPEMLKPFP--SDLKNNYDTSP-----SKAIPSLEEMGFEE--- 193
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
K G K L + NY+++R++P++N TS LS+ LRFG ISIR L K
Sbjct: 194 -----KKAHEGNKNLNTQLLL---NYSVDRDFPALNATSLLSVQLRFGAISIRHLAKQAL 245
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
T+L +LIWR+F+ MILY +P+ + FK++Y + W D+ ++
Sbjct: 246 NLDS-----------TYLHELIWREFFMMILYHFPHSAKQEFKEQYSRVPWRYDH---ED 291
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC G TGYPL+D+ + +LN +GYMHNR+RMVTASFL+K++ I+W+WGE YFA KL D
Sbjct: 292 FKRWCFGKTGYPLVDAGMRELNETGYMHNRVRMVTASFLVKHLLIDWRWGEEYFARKLMD 351
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D+++N GNWQW+A GC + P+FR+FNP Q ++FD Q +I+K++P+ + +
Sbjct: 352 YDMSANVGNWQWAAGCGCDAAPYFRVFNPTAQKERFDKQEEYIKKWIPEYNTML------ 405
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP+P+++H +++ ++ Y
Sbjct: 406 -------------------YPEPMIDHKFARERAIETY 424
>gi|381185982|ref|ZP_09893558.1| deoxyribodipyrimidine photo-lyase [Flavobacterium frigoris PS1]
gi|379652014|gb|EIA10573.1| deoxyribodipyrimidine photo-lyase [Flavobacterium frigoris PS1]
Length = 431
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 174/458 (37%), Positives = 261/458 (56%), Gaps = 65/458 (14%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD ILD L D R+ FI+ S+ E++ L S L+++ + +
Sbjct: 33 VIPLFVFDDLILDSLPKN----DSRVSFIYDSLSEINDKLHEIGSSLLVKKGKTAAVWES 88
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + ++ V N DYEP AI RD +I + L+V +S+KDQVIFE+ EI G Y
Sbjct: 89 LIEEYDVKEVFFNKDYEPYAIERDTVICELLEVNKTVSYSFKDQVIFEEKEITKADGLAY 148
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+I++ Y+ KW++K +S K ++ + K+ + S + SL +GF KS +
Sbjct: 149 TIYTPYKNKWLDKYRS-KLPVEEFDTKARFFSFYKSDFIFP-------SLEAIGFEKSII 200
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
K+ +N +K + +Y R++P+I+ TSYLS HLRFGT+SIRKLV F
Sbjct: 201 ------------KVKPHN-LKFVVDYQDIRDFPAIDKTSYLSPHLRFGTVSIRKLVNWAF 247
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ K D LS+LIWR+F+ IL+ +P VV +FK YD I W +D + +
Sbjct: 248 R------KNDVF-----LSELIWREFFMQILFSFPKVVTNNFKPAYDGIQWRND---EDD 293
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC G TGYP++D+ + QLN +GYMHNR+RMV ASFL K++ I W+WGE YFA KL D
Sbjct: 294 FKRWCSGTTGYPMVDAGMRQLNETGYMHNRVRMVVASFLCKHLLIQWQWGEAYFAEKLLD 353
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+++++N GNWQW+A +GC + P+FR+FNP IQ KKFD G +IRK++ +
Sbjct: 354 YEMSANVGNWQWAAGTGCDAAPYFRVFNPEIQQKKFDKDGAYIRKWIKEFD--------- 404
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
LG Y KP++EH++++ + Y
Sbjct: 405 ---------------LG--YGKPMVEHAMARDRAIATY 425
>gi|345867351|ref|ZP_08819365.1| DNA photolyase family protein [Bizionia argentinensis JUB59]
gi|344048281|gb|EGV43891.1| DNA photolyase family protein [Bizionia argentinensis JUB59]
Length = 434
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 166/415 (40%), Positives = 244/415 (58%), Gaps = 37/415 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN-YDSDLIIRYAIASKEIK 61
V +FIFD ILD L +D R+ FI+ ++ ++ LQ+ Y S + + K K
Sbjct: 32 VLPIFIFDSEILDSLPE----DDARVTFIYDTLQDMRKTLQDEYGSSIAMYNGTPKKVFK 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L ID V NHDYEP A RD I+ LK F ++KDQVIFEK+E++ G P
Sbjct: 88 ELAATYAIDTVFTNHDYEPYATQRDAEIQTFLKNTCVDFKTFKDQVIFEKDEVVKVDGDP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y + W E K K L+ Y SYL+NLV +++L + L+D+GF KS
Sbjct: 148 YRVYTPYMRIWKEAFK--KIDLEIYYTNSYLDNLVENTRLPNL------ELSDIGFIKST 199
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ I+ Y RN+P+ + TS+L HLRFGT+SIRK+VK
Sbjct: 200 QKITPYTVTPT-----------LIQEYEDKRNFPAQDATSHLGPHLRFGTVSIRKMVK-- 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K I ++ K + +LIWR+F+ IL+ +P + KSFK +YD I W ++
Sbjct: 247 -KAIAENNKI-------FWHELIWREFFMQILWHFPQTLTKSFKPKYDAIKWRNNEV--- 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYPL+D+ + +LN +G+MHNR+RM+ SFL K++ I+W+WGE YFA KL+
Sbjct: 296 EFKAWCQGKTGYPLVDAGMRELNETGFMHNRVRMLVGSFLCKHLLIDWRWGEAYFAEKLH 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
D++++SN GNWQW A SG + P+FRIFNP Q +KFD +I+K++P+ +L+
Sbjct: 356 DYEMSSNIGNWQWVAGSGVDASPYFRIFNPTTQIQKFDKDLKYIQKWVPEFQELT 410
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/479 (33%), Positives = 262/479 (54%), Gaps = 34/479 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FI D IL R+ G+ R+ F+ ++ +L +L+ S L++R S ++
Sbjct: 30 VIPLFILDDAILHAPRT-GMA---RVAFMIAALRDLDASLRARGSRLVVRRGRPSDVLRD 85
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
LV V N DY P A RD+ I+ L+ + F D VI E +++ G+PY
Sbjct: 86 LVGATGAVGVSWNRDYTPFARQRDQHIEAMLRDLNVATFIAADAVIMEPDDVRTDDGRPY 145
Query: 123 SIFSFYQKKWIEKVKSNKC-YLQSY------PVKSYLNNLVHSSKLHKIINNNIISLNDL 175
++++ Y+++W V+ + L++Y PV + +L I +N + ++ +
Sbjct: 146 TVYTPYRRRWRALVEQRRDDVLRAYEPPVLQPVPDGVADL-------PIPDNPDLDVSVI 198
Query: 176 GFCKSNLSSLGIKTGASG-AKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
+ + G TGA+ A L I Y RN + TS LS +LRFG ++
Sbjct: 199 ----QRIPAGGETTGAARLAAFLDPRATHGIAGYADGRNLLAEPATSRLSPYLRFGCVAP 254
Query: 235 RKLVKLIFKFIKK---HYKTDCIGYFT-----WLSQLIWRDFYQMILYCYPNVVNKSFKK 286
R ++ + + +C T W+ +L WRDFY IL+ +P+V+ +FK
Sbjct: 255 RAALRAALNLLDRAGEEQDAECAATLTRSIETWIGELAWRDFYYQILWHHPHVLRSAFKP 314
Query: 287 EYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMG 346
+YD + WE+D F W +G TGYP++D+A+ QLN +MHNR RM+ ASFL K++
Sbjct: 315 QYDALEWEND---PALFDAWKEGRTGYPVVDAAMRQLNREAWMHNRARMIVASFLTKDLL 371
Query: 347 INWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIR 406
I+W+WGE YF +L D D A+NNG WQWSA +G +QP+FRIFNP+ Q + FD +G ++R
Sbjct: 372 IDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQTFDPKGAYVR 431
Query: 407 KYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+YLP+L + ++YIH+PW + ++ G+I+G++YP P+++H+ + L Y + +
Sbjct: 432 RYLPELEAVPDRYIHAPWTMPYAEQQRCGVIIGRDYPAPVVDHAERRARALALYRAVSS 490
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 249/461 (54%), Gaps = 27/461 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV VFIFD IL + + R+ F+ +S+ L NL+ S L++R +
Sbjct: 30 EVVPVFIFDDAILSRPDTGAV----RVAFLLESLRNLDENLRARGSRLLLRRGRPEHVLA 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+LV + AV N D EP A+ RD ++ L+ C + D + + K G P
Sbjct: 86 QLVTETAASAVYFNRDVEPFALARDARVRAHLEGR-CAVEGFDDGGLTAPEAVRTKAGTP 144
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y++F+ Y++ Q P ++ + + ++ SL DLGF S
Sbjct: 145 YTVFTPYRQA---------VLAQPIPRPRLAPAMLRTPA--DVPSDPWPSLKDLGFATSV 193
Query: 182 LSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
G G + A+ L FI+ + Y R+ S +GTS LS +LRFG +S R+
Sbjct: 194 SPPPG---GETSAQARLQGFIQNGLARYATERDVLSADGTSRLSPYLRFGCLSPRR---- 246
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ ++ G +W+++LIWRDFY+ IL+ +P V +F++ YD++ WE++
Sbjct: 247 AYWAAREAVPEGSPGMESWIAELIWRDFYRQILFHFPYVETGAFRRAYDDLAWENN---A 303
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F WC+G TG+P++D+A+ QL ++G+MHNR RM+ ASFL K++ I+W+WGE +F L
Sbjct: 304 SWFDLWCQGKTGFPIVDAAMRQLLTTGWMHNRARMIVASFLTKDLLIDWRWGERHFMKHL 363
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D DLA+NNG WQW+AS+G +QP+FRIFNP Q KKFD G ++R+Y+P+L + +++I
Sbjct: 364 VDGDLAANNGGWQWAASTGTDAQPYFRIFNPTAQGKKFDPTGAYVRQYVPELRAVPDRWI 423
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
H P + ++G +YP P+++H + L +
Sbjct: 424 HEPSRMPPDVQRAFRCVIGVDYPAPLVDHGRQRAKALTMFG 464
>gi|120436173|ref|YP_861859.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
gi|117578323|emb|CAL66792.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
Length = 435
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 169/461 (36%), Positives = 256/461 (55%), Gaps = 62/461 (13%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-NYDSDLIIRYAIASKE 59
+ V +FIFD IL+ L +D R+ FIF+ + E+ LQ ++ S + I Y K
Sbjct: 30 LPVLPIFIFDHEILEKLPE----DDARVTFIFEELQEMRSTLQEDHGSSIAIFYRTPEKV 85
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
K L+ I+ V N DYEP A RD+ I K L +F +KDQVIFEK+E++ K G
Sbjct: 86 FKNLISDYEIEKVFTNRDYEPYAKERDQKIAKILSGNDIEFEDFKDQVIFEKDEVVKKDG 145
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
PY +++ Y+ W EK +K L + Y++N +S+L + SL D+GF K
Sbjct: 146 DPYVVYTPYKNLWREKF--SKIDLDFHYTTRYMDNFYQNSRLPNL------SLADIGFKK 197
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
S+L K IK+Y R+YP++ GTS L HLRFGT+S+R++++
Sbjct: 198 SSLKVPDYKVTPG-----------LIKDYKDKRDYPAVEGTSRLGPHLRFGTVSVRQMIR 246
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
D T+L +L+WR+F+ IL+ +P+ V ++FKK+YD I W ++
Sbjct: 247 ----------DADEESNKTFLDELVWREFFMQILFHFPDTVTEAFKKKYDRIEWRNN--- 293
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
K F W +G TGYPL+D+ + QLN SG+MHNR+RM+ SFL K++ I+W+WGE YFA K
Sbjct: 294 KDEFELWKQGKTGYPLVDAGMRQLNESGFMHNRIRMLVGSFLCKHLLIDWRWGEAYFAEK 353
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D++++SN GNWQW A SG + P+FRIFNP Q +KFD +I++++P+
Sbjct: 354 LLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIEKFDKDKEYIKEWVPEFGT----- 408
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+YP+ +++H +++ LK Y
Sbjct: 409 --------------------DDYPEKMVDHKEARERALKTY 429
>gi|319954856|ref|YP_004166123.1| deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
gi|319423516|gb|ADV50625.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
Length = 436
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 173/460 (37%), Positives = 256/460 (55%), Gaps = 62/460 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN-YDSDLIIRYAIASKEIK 61
V +FIFDK IL+ L +D R+ FIF+ + + LQ +S L I + + K
Sbjct: 32 VLPIFIFDKEILENLPK----DDARVSFIFEQLESMRNTLQEEVESSLAIYHGTPQEIFK 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L+ + AV NHDYEP A RD I+ LK F SYKDQVIFEK ++L G P
Sbjct: 88 SLIKDYEVQAVYTNHDYEPYATERDTKIQDYLKDKQVDFHSYKDQVIFEKGDVLKDDGDP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y+ KW + + K L++Y K Y N + S+L + SL+D+GF
Sbjct: 148 YVVYTPYKNKW-KTIFDAKKDLETYNTKKYFKNFIAHSRLPNL------SLSDMGF---E 197
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSI-NGTSYLSIHLRFGTISIRKLVKL 240
S + + ++G+K+ I+NY RNYP+I NGTS L HLRFG++SIR++ K
Sbjct: 198 TSKIKVPNYSAGSKV--------IQNYEDTRNYPAIENGTSRLGPHLRFGSVSIREITKR 249
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + S+LIWR+F+ IL+ +P+ +F+ +YD I W ++ +
Sbjct: 250 AIAEKNE----------VFWSELIWREFFMQILWHFPHTTKNAFRPKYDRIEWRNN---E 296
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W G TGY L+D+ + +LN++GYMHNR+RM+ ASFL K++ I+W+WGE YFA KL
Sbjct: 297 AEFEKWKNGETGYALVDAGMRELNTTGYMHNRVRMLVASFLCKHLLIDWRWGEAYFAEKL 356
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
DFDL++N GNWQW+A SG + P+FRIFNP+ Q KFD Q +I ++ L +LS
Sbjct: 357 LDFDLSANVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKQKEYINTWVSDLQELS---- 412
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP +++H ++++ LK Y
Sbjct: 413 ---------------------YPDKMVDHKMARERCLKTY 431
>gi|345874779|ref|ZP_08826579.1| hypothetical protein l11_06600 [Neisseria weaveri LMG 5135]
gi|343970138|gb|EGV38336.1| hypothetical protein l11_06600 [Neisseria weaveri LMG 5135]
Length = 468
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 160/466 (34%), Positives = 254/466 (54%), Gaps = 36/466 (7%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ V VF+FD N ++P RR FI+ S+++ L + L I + +++
Sbjct: 30 LPVVGVFVFD-NAVEP---HAAANHRRQSFIYDSVLKFQTALSQKNIPLWILHGDTLRQL 85
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
+L KLN ++ DY P + + L + D V+ K ++ G+
Sbjct: 86 TELAGKLNAAHLVSGEDYHPNITALGERLWHALNHSNRTYTRISDHVVLPKAAVMTPQGR 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL------ND 174
PY FS Y+K W++ Y Q Y + ++L K + L ++
Sbjct: 146 PYHAFSHYKKSWLQ------TYAQRYRNGQPRTDWHTLAELQKRLPETATQLPPVPMPSE 199
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
+GF N + G + A+ L++FI +I +Y++ R++P+ GTS L+ +L G +S
Sbjct: 200 IGFQYCNYP---LPAGEAAAQKQLDHFIGQISSYHLTRDFPAKKGTSQLAAYLNQGMLSA 256
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
R L + + G WL +LIWR+FYQ ILY P+VV++SF+ EY ++ WE
Sbjct: 257 RSLAHRVASISNE-------GAEKWLEELIWREFYQQILYHNPDVVHQSFRPEYHHLHWE 309
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
+ + F W G TGYP++D+A+ QL + G MHNRLRM+TA FL+K++ I+W+ GE
Sbjct: 310 NR---EDWFERWKNGETGYPIVDAAMRQLKACGMMHNRLRMITAGFLVKDLLIDWRLGEA 366
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
+FA +L D+DLA+NNGNWQWSA +GC +QP+FRIFNP++QS+KFD G++IR++LP+L+
Sbjct: 367 WFAEQLLDYDLAANNGNWQWSAGTGCDAQPYFRIFNPVLQSQKFDPDGLYIRRHLPELAH 426
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
L IH+PW A I YP P+++H ++ L +
Sbjct: 427 LGKDVIHAPWLAKDS-------IDTHGYPAPMVDHRTQREKALAMF 465
>gi|225011846|ref|ZP_03702284.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
gi|225004349|gb|EEG42321.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
Length = 434
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 173/466 (37%), Positives = 255/466 (54%), Gaps = 63/466 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFDK IL L Q D R+E I ++ + I ++ ++ + K
Sbjct: 31 VIPIFIFDKEILKKLPKQ----DARVEMILLALGAIDIAMKRNRCNVGKYHGTPKAIFSK 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + NI+ V+ N DYEP A RD IK L+ G +F YKDQVIFEK E++ G PY
Sbjct: 87 LIKQWNIEKVICNEDYEPYASERDSEIKTLLEAAGIQFECYKDQVIFEKEEVVKGDGTPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ Y +KW+EK + LQ YP + L++L + SL DL NL
Sbjct: 147 KVYTPYSRKWLEKYQETP--LQFYPSEVELDSLASNE-----------SLPDL-----NL 188
Query: 183 SSLGIKT-GASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
S LG +T G + + ++ + I Y RN+P+++ TS L HLRFGT+SIR+LV
Sbjct: 189 SDLGFETSGIAQPEYRFDDTL--IDQYEATRNFPALDQTSRLGAHLRFGTVSIRRLVN-- 244
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ T+L +LIWR+F+ IL+ +P KSFK +Y+ I+W ++
Sbjct: 245 --------QASSRSNNTFLKELIWREFFMQILWHFPYTQQKSFKPQYERIIWRNN---PD 293
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC G TGYPL+D+ + +LN +G+MHNR+RM+ SFL K++ I+W+WGE+YFA KL
Sbjct: 294 EFEKWCAGETGYPLVDAGMRELNETGFMHNRVRMLVGSFLCKHLLIDWRWGESYFAEKLL 353
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D++++SN GNWQW A G + P+FRIFNP Q KKFD Q +I+K++P +L
Sbjct: 354 DYEMSSNVGNWQWVAGCGVDAAPYFRIFNPSEQIKKFDKQLQYIQKWVPNFQEL------ 407
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+YP PI++H +++ L Y N L
Sbjct: 408 -------------------DYPSPIVDHKYARERCLTTYKEALNTL 434
>gi|150025093|ref|YP_001295919.1| deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
psychrophilum JIP02/86]
gi|149771634|emb|CAL43108.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
psychrophilum JIP02/86]
Length = 428
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 168/458 (36%), Positives = 258/458 (56%), Gaps = 62/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ +FIFD NIL SQ +D R+ FI + + ++ LQ L + Y S+ +K
Sbjct: 28 ILPIFIFDYNIL----SQLSKDDARVTFIHELLSKMQKKLQEKGKSLAVFYGKPSEIFEK 83
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + + + NHDYEP A RDK + + +F + KDQVIFEK+E+ GKPY
Sbjct: 84 LISENKVKTIYTNHDYEPYARKRDKELNQLFANHNIQFLTSKDQVIFEKSEVTKDDGKPY 143
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ Y KW EK K + L++Y ++YL+ +V +SL +GF S +
Sbjct: 144 IVYTPYTNKWKEKFK--QTTLKNYNSENYLDKIVTHP-------YPFLSLESIGFETSKI 194
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ + I NY RN+PS+N TS+L I+LRFG +S+RK+++
Sbjct: 195 TVASYDISEN-----------LIDNYEATRNFPSLNKTSFLGIYLRFGAVSVRKMMQEAI 243
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
K + T+ +LIWR+F+ IL+ +P+ +NKSFK++YD I+WE+ +
Sbjct: 244 KSKNE----------TFFKELIWREFFMQILWHFPHTINKSFKEKYDAIIWEN---KEDL 290
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYP +D+ + +LN++G+MHNR+RM+ ASFL K++ I+W+WGE YFA KL D
Sbjct: 291 FQKWCQGKTGYPFVDAGMRELNATGHMHNRVRMIVASFLCKHLLIDWRWGETYFATKLLD 350
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
++ +SN GNWQW+A SG + P+FRIFNP Q KKFD +I+K++P+L
Sbjct: 351 YEQSSNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKYIKKWIPELQ--------- 401
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+YP+PI+EH +++ LK Y
Sbjct: 402 ----------------TSHYPEPIVEHKFARERCLKVY 423
>gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
Length = 434
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 168/459 (36%), Positives = 251/459 (54%), Gaps = 62/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-NYDSDLIIRYAIASKEIK 61
V +FIFD ILD L + +D R+ F+ + EL +Q N S L I + + K
Sbjct: 32 VLPIFIFDSEILDGLPA----DDPRVTFLHDRLQELRSRMQENQGSSLAIYHGKPLEIFK 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L ++ V N DYEP A RD+ + + L G +F ++KDQVIFEK+E++ G P
Sbjct: 88 ELASDWDVGQVFTNRDYEPYARDRDEQVGQWLSEQGIEFHTFKDQVIFEKDEVVKDDGDP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y KKW + + L ++ L NL+ S+L L D GF +S
Sbjct: 148 YVVYTPYMKKWKQVFRDTP--LATFDSAGQLGNLIAHSRLPNP------DLADFGFERSA 199
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ G K I Y NRNYP+ GTS L HLRFGTISIR+ +
Sbjct: 200 IPVPDYDMGG-----------KLIDAYEDNRNYPAREGTSRLGPHLRFGTISIRQALGKA 248
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + T+ ++LIWR+F+ IL+ +P V+++F+KEYD I W +D +
Sbjct: 249 LESSNE----------TFWNELIWREFFMQILWHFPRTVHEAFRKEYDRIAWRND---ES 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W +G TG+ L+D+ + QLN+SGYMHNR+RM+TASFL K++ I+W+WGE YFA KL
Sbjct: 296 EFEKWREGRTGFALVDAGMRQLNASGYMHNRVRMLTASFLCKHLLIDWRWGEAYFAEKLL 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+++ASN GNWQW+A SG + P+FRIFNP+ Q KFD +IR+++P+
Sbjct: 356 DYEMASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKDKSYIREWIPEYGT------- 408
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
++YP+ +++H +++ LK Y
Sbjct: 409 ------------------EDYPEKMVDHKAARERCLKTY 429
>gi|336173293|ref|YP_004580431.1| deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
gi|334727865|gb|AEH02003.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
Length = 434
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 177/459 (38%), Positives = 253/459 (55%), Gaps = 62/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYD-SDLIIRYAIASKEIK 61
V +FIFD ILD L D R+ FIF+++ + LQ+ + S L + Y K
Sbjct: 32 VLPIFIFDSEILDELPEN----DARVSFIFETLQNMRQTLQDENNSSLAMFYGKPIDIYK 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L+ NI+ V NHDYEP A RD I+ L+ F +YKDQVIFEKNE++ GKP
Sbjct: 88 SLIKDYNINTVYTNHDYEPYAKERDSEIQSFLEENKINFKTYKDQVIFEKNEVVKDDGKP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y KKW K K L+ Y ++LNNL+ +++L + SL+D+GF KS
Sbjct: 148 YVVYTPYMKKWKAKFKDYD--LKIYYTNTFLNNLIENTRLPNL------SLSDIGFKKS- 198
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
S IK + I+ Y RN+P+ + TS L HLRFGT+S+RK+VK
Sbjct: 199 --SQDIKDYTVTPTL--------IQEYEATRNFPAKDTTSRLGPHLRFGTVSVRKMVK-- 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K + +LIWR+F+ IL+ +P+ +FK +YDNI W ++N K
Sbjct: 247 --------KATAENNEIFWQELIWREFFMQILWHFPDTHKDAFKAKYDNIKWRNNN---K 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC G TGYPL+D+ + QLN +G+MHNR+RM+ SFL K++ I+W+ GE YFA KL+
Sbjct: 296 EFKAWCDGKTGYPLVDAGMRQLNQTGFMHNRVRMLVGSFLCKHLLIDWRKGEAYFAQKLH 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+D+ASN GNWQW A SG + P+FRIFNP Q KFD +I++++P+
Sbjct: 356 DYDMASNVGNWQWVAGSGVDASPYFRIFNPTTQIDKFDKDKKYIKQWIPEFG-------- 407
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP+ I++H +++ LK Y
Sbjct: 408 -----------------TDKYPEKIVDHKEARERCLKVY 429
>gi|298208823|ref|YP_003717002.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
HTCC2559]
gi|83848750|gb|EAP86619.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
HTCC2559]
Length = 434
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 172/418 (41%), Positives = 245/418 (58%), Gaps = 39/418 (9%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN-YDSDLIIRYAIASKEIK 61
V +FIFDK+ILD L D R+ FIF+++ E+ LQ+ YDS L + + K K
Sbjct: 32 VLPLFIFDKDILDKLPEN----DARVTFIFETLQEMRKELQDDYDSSLAMFHDTPEKVFK 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
LV I V N DYEP A RD IK+ L F +YKDQVIFEK+E++ K G P
Sbjct: 88 SLVKDYQIQEVFTNRDYEPYAKERDTSIKELLSKNNISFNTYKDQVIFEKDEVVKKDGDP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y+ W E K + L+ + +L+N V +++L + SL+++GF KS+
Sbjct: 148 YLVYTPYKNTWKENFKDHT--LKIHYTSQHLDNTVKNTRLPNV------SLSEMGFKKSS 199
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+S T + I+NYN RN+P+ +GTS LS HLRFGT+ IRK+ K
Sbjct: 200 ISFPEYDTSPT-----------LIENYNDTRNFPAKDGTSNLSPHLRFGTVGIRKIYKKA 248
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ T+ ++LIWR+F+ ILY +P VN +FKK+YD I W ++ +
Sbjct: 249 IDAKDE----------TFWNELIWREFFMQILYHFPETVNNAFKKKYDRIEWRNN---ED 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W G TGYPL+D+ + QLN +G MHNR+RMV SFL K++ I+W+WGE YFA KL
Sbjct: 296 EFEKWKTGTTGYPLVDAGMRQLNETGLMHNRVRMVVGSFLCKHLLIDWRWGEAYFAEKLL 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
D++++SN GNWQW A SG + P+FRIFNP Q KFD +I ++ + + +NKY
Sbjct: 356 DYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIDKFDKNKTYINHWVKEYN--TNKY 411
>gi|443244632|ref|YP_007377857.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
gi|442802031|gb|AGC77836.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
Length = 440
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/465 (35%), Positives = 263/465 (56%), Gaps = 64/465 (13%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-NYDSDLIIRYAIASKE 59
+ V +FIFDK ILD L +D R+ FI++ + + LQ + DS L + Y +
Sbjct: 30 LPVLPIFIFDKEILDKLPE----DDARVSFIYEELQRMRSQLQQDQDSSLAMYYGKPQEI 85
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
K+++ ++D V N DYEP A RD+ I + L F ++KDQVI+EK+E++ G
Sbjct: 86 WKEIISSYDVDTVFTNRDYEPYAKERDEEIDQLLAEHNIDFKTFKDQVIYEKDEVVKNDG 145
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQS---YPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
PY +++ Y+ KW+E + + + Y ++N + +S+L + +L+D+G
Sbjct: 146 DPYVVYTPYKNKWLEHFRKDFGAGEDQKFYYTNDVIDNCIKNSRLPNL------TLSDMG 199
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSI-NGTSYLSIHLRFGTISIR 235
F KS++ K + I+ Y RN+P+I +GTS L ++LRFG +S+R
Sbjct: 200 FKKSSIEIPEYKVTPT-----------LIEEYENTRNFPAIEDGTSRLGVYLRFGVVSVR 248
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
K+V+ K D T+LS+LIWR+F+ ILY +P+ +K+FK +YD I W +
Sbjct: 249 KMVR----------KADHASNKTFLSELIWREFFMQILYHFPHTKDKAFKSKYDRIEWRN 298
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
D + F W G TGY L+D+ + +LNS+GYMHNR+RM+ ASFL+K++ I+W+WGE Y
Sbjct: 299 D---EDQFEKWKTGTTGYALVDAGMRELNSTGYMHNRVRMLVASFLVKHLLIDWRWGETY 355
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA KL D++++SN GNWQW+A SG + P+FRIFNPI Q KFD +I++++P+
Sbjct: 356 FAEKLLDYEMSSNVGNWQWAAGSGVDAAPYFRIFNPITQKDKFDKDRKYIKEFVPEFGT- 414
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+YP+ +++H +++ LK Y
Sbjct: 415 ------------------------DDYPEMMVDHKEARERCLKTY 435
>gi|417957982|ref|ZP_12600899.1| hypothetical protein l13_13110 [Neisseria weaveri ATCC 51223]
gi|343967374|gb|EGV35619.1| hypothetical protein l13_13110 [Neisseria weaveri ATCC 51223]
Length = 468
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 254/466 (54%), Gaps = 36/466 (7%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ V VF+FD N ++P RR FI+ S+++ L + L I + +++
Sbjct: 30 LPVVGVFVFD-NAVEP---HAAANHRRQSFIYDSVLKFQTALSQKNIPLWILHGDTLRQL 85
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
+L KLN ++ DY P + + L + + V+ K ++ G+
Sbjct: 86 TELAGKLNAAHLVSGEDYHPNITALGERLWHALNHSNRTYTRVSNHVVLPKAAVMTPQGR 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL------ND 174
PY FS Y+K W++ Y Q Y + ++L K + L ++
Sbjct: 146 PYHAFSHYKKSWLQ------TYAQRYRNGQPRTDWHTLAELQKRLPETATQLPPVPMPSE 199
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
+GF N + G + A+ L++FI +I +Y++ R++P+ GTS L+ +L G +S
Sbjct: 200 IGFQYCNYP---LPAGEAAAQKQLDHFIGQISSYHLTRDFPAKKGTSQLAAYLNQGMLSA 256
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
R L + + G WL +LIWR+FYQ ILY P+VV++SF+ EY ++ WE
Sbjct: 257 RSLAHHVASISNE-------GAEKWLEELIWREFYQQILYHNPDVVHQSFRPEYHHLHWE 309
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
+ + F W G TGYP++D+A+ QL + G MHNRLRM+TA FL+K++ I+W+ GE
Sbjct: 310 NR---EDWFERWKNGETGYPIVDAAMRQLKACGMMHNRLRMITAGFLVKDLLIDWRLGEA 366
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
+FA +L D+DLA+NNGNWQWSA +GC +QP+FRIFNP++QS+KFD G++IR++LP+L+
Sbjct: 367 WFAEQLLDYDLAANNGNWQWSAGTGCDAQPYFRIFNPVLQSQKFDPDGLYIRRHLPELAH 426
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
L IH+PW A I YP P+++H ++ L +
Sbjct: 427 LGKDVIHAPWLAKDS-------IDTHGYPAPMVDHRTQREKALAMF 465
>gi|399926990|ref|ZP_10784348.1| deoxyribodipyrimidine photo-lyase [Myroides injenensis M09-0166]
Length = 437
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 170/458 (37%), Positives = 264/458 (57%), Gaps = 62/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD +D L++ I +DRR+++I++ I+EL L+ Y+S + + ++ +
Sbjct: 34 VLPIFIFD---VDILQAFTIKKDRRVDYIYQVIVELDSFLKKYNSGIKVFHSTTENAFES 90
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L ++ V N DYE +A+ RDK + L + F+++KD VIF+ EIL PY
Sbjct: 91 LTNDYDVQGVYCNEDYESKALQRDKQVNDYLAIRHIPFYTFKDHVIFKGGEILKNDNSPY 150
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
I++ Y K+W + K N+ YL+ Y +K + L + + + +L D+G+ KS+
Sbjct: 151 QIYTPYSKQW--RSKLNEDYLRDYTIKLTQDLLYPFTSI-------LPTLEDIGYEKSDF 201
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
S I + S I +YN+NR++PS + T+ L I LRFGTIS+R+ VK
Sbjct: 202 S-FEIPSLESSI----------IDDYNLNRDFPSKDATTKLGIALRFGTISVRRCVK--- 247
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ +H WLS+LIWRDF+ ILY +P V N+ FK++Y+ I W ++ ++
Sbjct: 248 -YALEHNDV-------WLSELIWRDFFSQILYLFPFVENRCFKEKYEAIPWRNN---EEE 296
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC TGYP++D+ + +L S+G+MHNR+RMV ASFL K++ I+W+WGE +FA L D
Sbjct: 297 FELWCNARTGYPIVDAGMRELISTGFMHNRVRMVVASFLTKHLLIDWRWGEAFFAQYLLD 356
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+DLASNNGNWQW+A GC + P+FR+FNP+ Q+KKFD +I K+LP+
Sbjct: 357 YDLASNNGNWQWAAGCGCDAAPYFRVFNPLEQAKKFDKDNEYIDKWLPE----------- 405
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
I LG Y +PI+EH +++ + Y
Sbjct: 406 -------------IRLG-TYWEPIVEHKFARERAIATY 429
>gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
Length = 428
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 176/461 (38%), Positives = 259/461 (56%), Gaps = 66/461 (14%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V +FIFD IL SQ +D R+ FI + + ++ L L + + +
Sbjct: 27 DVLPIFIFDSEIL----SQLPKDDARVSFIHEQLEKIQSELNKIGKSLAVFHGKPIEIFT 82
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L+ + I +V NHDYEP A RDK + + G F + KDQVIFEK+E++ G P
Sbjct: 83 QLISENTITSVYTNHDYEPYARKRDKEMNQLFTTNGISFLTSKDQVIFEKSEVVKDDGSP 142
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN--IISLNDLGFCK 179
Y +++ + KKW E K K L + KL K+ ++ +SL D+GF K
Sbjct: 143 YVVYTPFSKKWKENFKKIK-----------LVHYTSEDKLDKVAKHSYPFLSLTDIGFEK 191
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
SN IK A L I+NY RN+P++N TSYL I+LRFG +SIRK++
Sbjct: 192 SN-----IKVSAFDVSENL------IQNYEATRNFPALNKTSYLGIYLRFGAVSIRKMIA 240
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
K I + K D T+ ++LIWR+F+ IL+ +P+ N SF+ +YD I+W N
Sbjct: 241 ---KAIAE--KND-----TFWNELIWREFFMQILWHFPHTYNSSFRPKYDGIVW---NNN 287
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
++ F WC+G TGYP +D+ + +LNS+G+MHNR+RM+ ASFL K++ I+W+WGE YFA K
Sbjct: 288 EELFQKWCEGKTGYPFVDAGMRELNSTGHMHNRVRMIVASFLCKHLLIDWRWGETYFAQK 347
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D+++ASN GNWQW+A SG + P+FRIFNP Q KKFD +I+K++P+L
Sbjct: 348 LLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKYIKKWIPELET----- 402
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+ YPKPI++H +++ LK Y
Sbjct: 403 --------------------EYYPKPIVDHKEARERCLKVY 423
>gi|386821526|ref|ZP_10108742.1| deoxyribodipyrimidine photolyase [Joostella marina DSM 19592]
gi|386426632|gb|EIJ40462.1| deoxyribodipyrimidine photolyase [Joostella marina DSM 19592]
Length = 434
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 173/459 (37%), Positives = 258/459 (56%), Gaps = 62/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN-YDSDLIIRYAIASKEIK 61
V +FIFD NIL L D R+ FI + E+ + Q YDS + + + K
Sbjct: 32 VMPIFIFDSNILQELPKN----DARVTFIHGRLQEMRMEFQERYDSSIALYFDTPINVFK 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
LV + I A+ N DYEP A RD+ I + +F ++KDQV+FEK+E++ G P
Sbjct: 88 SLVKEYEIQAIYTNRDYEPYAKERDQEISTYVSSKKIEFKTFKDQVVFEKDEVVKDDGDP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y KKW E +K S + Y + LV +++L ++ SL+D+GF N
Sbjct: 148 YVVYTPYMKKWKENF--SKKNATSVSLSEYFDKLVKNTRLPQL------SLSDIGF---N 196
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
SS+ +K IL NY R++P+ GTS +S+HLRFGTISIR+ ++
Sbjct: 197 KSSIEVKNYDITPSIL--------DNYKNLRDFPAQKGTSNISVHLRFGTISIRQAMQKA 248
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ K+H T+ ++LIWR+F+ IL+ +P + +F+K+YD I W ++ +
Sbjct: 249 LE-AKEH---------TFWNELIWREFFMQILWHFPETTHNAFRKKYDKINWRNN---ET 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WCKG TGYPL+D+ + QLN +GYMHNR+RMV ASFL K++ I+W+WGE YFA +L
Sbjct: 296 EFQKWCKGETGYPLVDAGMRQLNKTGYMHNRVRMVVASFLCKHLLIDWRWGEAYFAERLL 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D++L+SN GNWQW+A SG + P+FRIFNP Q KKFD +I ++ L++L+
Sbjct: 356 DYELSSNVGNWQWAAGSGVDAAPYFRIFNPTTQIKKFDKDLKYINTWVEDLNELT----- 410
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP PI++H +++ LK Y
Sbjct: 411 --------------------YPDPIVDHKEARERCLKTY 429
>gi|408492000|ref|YP_006868369.1| deoxyribodipyrimidine photolyase PhrB-like protein [Psychroflexus
torquis ATCC 700755]
gi|408469275|gb|AFU69619.1| deoxyribodipyrimidine photolyase PhrB-like protein [Psychroflexus
torquis ATCC 700755]
Length = 435
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 170/460 (36%), Positives = 258/460 (56%), Gaps = 64/460 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN-YDSDLIIRYAIASKEIK 61
V +FIFDKNIL+ L+ +D RI FIF+ + ++ +LQ+ Y S + ++ +
Sbjct: 32 VVPLFIFDKNILNELQE----DDARISFIFEQLQKMRSHLQDHYGSSIATYHSTPEEAFH 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L+ ++AV N DYEP A RD I L G +F +KDQVIFEK E+ G
Sbjct: 88 ELLKDFEVEAVYTNRDYEPYAHQRDSKINTLLANQGIEFHDFKDQVIFEKTEVEKNDGGM 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y ++W K + L+++P + +L+N +S L + SL+D+GF KS+
Sbjct: 148 YLVFTPYMRQW--KKEFENIDLKTFPSEDHLDNTYKNSMLPDV------SLSDMGFVKSS 199
Query: 182 LSSLGIKTGASGAKILLNNFIKKI-KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ ++ N K + ++Y RN PSI GTS LS +LRFG I RKL++
Sbjct: 200 I------------QVPDYNITKDLLEHYEDTRNIPSIEGTSRLSPYLRFGLIGYRKLIQA 247
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ T+L++LIWR+FY+ ILY +P N +FK +YD I W +D +
Sbjct: 248 AL----------SVKNETFLNELIWREFYKAILYNHPKTQNSAFKPKYDRIEWRND---E 294
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W KG TGYP++D+ + QLN +G+MHNRLRMV SFL K++ I+W+WGE YFA KL
Sbjct: 295 NEFEKWKKGKTGYPIVDAGMRQLNETGWMHNRLRMVVGSFLCKHLLIDWRWGEAYFAEKL 354
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D++++SN G WQW A SG + P+FRIFNP Q+ +FD +I K++P+L+
Sbjct: 355 LDYEMSSNVGGWQWVAGSGVDAAPYFRIFNPYSQTDRFDKDKKYIMKWIPELNT------ 408
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YPKP+++H ++++ L+ Y
Sbjct: 409 -------------------DRYPKPMVDHKIARERCLETY 429
>gi|392391321|ref|YP_006427924.1| deoxyribodipyrimidine photolyase [Ornithobacterium rhinotracheale
DSM 15997]
gi|390522399|gb|AFL98130.1| deoxyribodipyrimidine photolyase [Ornithobacterium rhinotracheale
DSM 15997]
Length = 457
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/412 (38%), Positives = 251/412 (60%), Gaps = 37/412 (8%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ V C+FIFD IL L Q D+R+ FI + ++ L +L+ +SDL+I S+
Sbjct: 51 IPVKCIFIFDTEILKHLPKQ----DKRVGFILQQLLALKKSLRKLNSDLLILKGNPSEIW 106
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
K L ++ AV N DYEP A+ RD+ +++ L +F ++KDQ+IFEKNE+L + G+
Sbjct: 107 KDLAQDSHLKAVFTNRDYEPYALQRDEKVQRLLTQKNIEFHTFKDQIIFEKNEVLTQAGE 166
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
PY +++ Y+ +W +K+ L+++P+ + S + N++ +L +GF
Sbjct: 167 PYKVYTPYKNQW-KKILEPARDLKAFPIA------LEKSNFYTFFNDDFETLESIGFENV 219
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSIN-GTSYLSIHLRFGTISIRKLVK 239
+ +L L N I +Y R+ P +N GTS L LRFGT+SIR+ ++
Sbjct: 220 EIPNLPTD---------LQNI--NIDHYEKERDLPYLNDGTSKLGTALRFGTLSIREAMR 268
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ +H +T + ++LIWR+F+ +L YP VV+K+FK +YD I W ++
Sbjct: 269 ----YAMQHNET-------FWNELIWREFFSQVLGHYPEVVSKAFKPKYDFIAWRNN--- 314
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
++ F WC+G TG P++D+ + +LN++G+MHNR+RM+ SFL+KN+ I+W+WGE YFA K
Sbjct: 315 EQEFELWCQGKTGVPIVDAGLRELNATGFMHNRVRMIVGSFLVKNLLIDWRWGEAYFAEK 374
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQ 411
L DFDLASNNGNWQW A G + P+FR+FNPI Q++KFD +I+K++P+
Sbjct: 375 LMDFDLASNNGNWQWVAGCGTDAAPYFRVFNPITQAEKFDPNQKYIKKWIPE 426
>gi|347536503|ref|YP_004843928.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
branchiophilum FL-15]
gi|345529661|emb|CCB69691.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
branchiophilum FL-15]
Length = 428
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 172/456 (37%), Positives = 258/456 (56%), Gaps = 62/456 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V+ +FIFD NIL L D R++FI S+ +++ Q Y+S + Y + K+
Sbjct: 28 VFPIFIFDHNILQQLEKN----DARVDFIHDSLQKMNDEFQKYNSSIATFYGDPIEIWKE 83
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ NI +V IN DYEP A RDK I L+ +YKDQVIFEKNEI+ + G PY
Sbjct: 84 LITNHNITSVYINKDYEPAARERDKKIYYLLQEHQIPLKAYKDQVIFEKNEIVKEDGSPY 143
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y KKW K K +K + + YL +L S +SL +GF KS
Sbjct: 144 VVFTPYSKKW--KQKFDKNLINVAYSEDYLQHLQPHSY-------PFLSLEKIGFKKSLQ 194
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
L I G + + NY +NRN+P + TS + HLRFGTISIR++++ I
Sbjct: 195 KVLPIAIGH-----------ELVDNYELNRNFPHLAKTSNAAPHLRFGTISIREIIRNII 243
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ T+L++LIWR+F+ +++ YP+ + F+ +Y+NI W+++ +
Sbjct: 244 DIENE----------TYLNELIWREFFMNVIWHYPHTTHLCFRPKYENIPWDNN---EMY 290
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC G TGYP++D+ + +LN++GY+HNR+RM+ ASFL K++ I+W+WGE YFA+KL D
Sbjct: 291 FEKWCLGQTGYPIVDAGMRELNATGYLHNRVRMIVASFLCKHLLIDWRWGEAYFASKLLD 350
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
++ +SN GNWQW+A G + P+FRIFNP+ Q+KKFD +I+K++P+ +L
Sbjct: 351 YEQSSNVGNWQWAAGCGVDAAPYFRIFNPMEQTKKFDANCKYIQKWVPEYQEL------- 403
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILK 458
NYPKPI+ H ++ LK
Sbjct: 404 ------------------NYPKPIVNHQEARAKCLK 421
>gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
Length = 437
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/412 (39%), Positives = 245/412 (59%), Gaps = 37/412 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-NYDSDLIIRYAIASKEIK 61
V +FIFD ILD L +D R+ FIF+++ ++ LQ N+ S + + + + K
Sbjct: 33 VMPIFIFDPEILDNLPE----DDARVTFIFETLQDMRNELQENHHSSIGMYHGKPEEVFK 88
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L+ ++ V N DYEP A RD+ I+K L KF ++KDQVIFEK+E++ G P
Sbjct: 89 ELLKNYSLGKVFTNRDYEPYAKDRDEKIQKLLDENNVKFETFKDQVIFEKDEVVKGDGDP 148
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y K W+E K++ L+ + +L+NLV +++L + SL+D+GF KS+
Sbjct: 149 YVVYTPYMKTWMEHFKNSD--LKIHYTSQFLDNLVQNTRLPNL------SLSDIGFKKSS 200
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L T S I+ Y RN PS GTS L HLRFGT+S+RK+VK
Sbjct: 201 LKVPDFDTTPS-----------LIQRYEDTRNIPSKEGTSRLGPHLRFGTVSVRKMVK-- 247
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K + T+L +L+WR+F+ +LY P+ V +FKK+YDNI W ++ K+
Sbjct: 248 --------KANNEKNKTFLQELVWREFFMQVLYHNPSTVTDAFKKKYDNIQWRNN---KE 296
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W G TG+PL+D+ + QLN SG+MHNR+RM+ SFL K++ I+W+WGE YFA KL
Sbjct: 297 EFEKWKNGKTGFPLVDAGMRQLNKSGFMHNRVRMLVGSFLCKHLLIDWRWGEAYFAEKLL 356
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
D++++SN GNWQW A SG + P+FRIFNP Q KFD +I++++ +
Sbjct: 357 DYEMSSNVGNWQWVAGSGVDAVPYFRIFNPTTQIDKFDKDKKYIKEWVEEFG 408
>gi|402495080|ref|ZP_10841814.1| deoxyribodipyrimidine photo-lyase [Aquimarina agarilytica ZC1]
Length = 433
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 173/459 (37%), Positives = 261/459 (56%), Gaps = 62/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL+ L + D R+ FI+ S++E+++ L + + + + K+
Sbjct: 31 VLPIFIFDTEILNSLPKK----DARLNFIYDSLLEINLQLNKENKGISLYHGKPLDIFKQ 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L ++NI +V NHDYEP A RD I L G F +YKDQV FEKNEI+ G PY
Sbjct: 87 LCKEINITSVYTNHDYEPYAQNRDTEIADFLNTNGIPFKTYKDQVYFEKNEIVKADGSPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ Y+ KW + K+ + ++Q YP + YL N+ ++ N +SL LGF KS++
Sbjct: 147 MVYTPYKNKWKDLFKTTE-FIQ-YPSEDYLANI------YEHFNYTSLSLELLGFEKSDI 198
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPS-INGTSYLSIHLRFGTISIRKLVKLI 241
L S I+ Y RN PS NGTS L HLRFGT+SIR+++K
Sbjct: 199 KVLPFTATPS-----------LIEGYEDTRNIPSNQNGTSKLGPHLRFGTVSIREMIK-- 245
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K I + + + S+LIWR+F+ IL+ +P+ + FK +YD I W ++ +
Sbjct: 246 -KAIAQKNEV-------FWSELIWREFFMQILWHFPHTQHACFKPKYDRIQWRNN---EM 294
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W KG TGYPL+D+ I +LN++GYMHNR+RM+ SFL K++ I+W+WGE YFA KL
Sbjct: 295 EFEKWKKGETGYPLVDAGIRELNTTGYMHNRVRMLVGSFLCKHLLIDWRWGEAYFAEKLL 354
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D++L+SN GNWQW A +G + P+FRIFNP Q +KFD Q I+I++++ L++L+
Sbjct: 355 DYELSSNIGNWQWVAGTGVDAAPYFRIFNPTTQIQKFDKQHIYIKRWVKDLNELT----- 409
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP P+++H ++++ L Y
Sbjct: 410 --------------------YPTPMVDHKMARERCLSTY 428
>gi|344204249|ref|YP_004789392.1| deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
gi|343956171|gb|AEM71970.1| Deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
Length = 437
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 177/461 (38%), Positives = 258/461 (55%), Gaps = 63/461 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-NYDSDLIIRYAIASKEIK 61
V +FIFD IL+ L D R+ FI K I +L+ L NY S + + K
Sbjct: 32 VLPLFIFDTEILENLPKA----DARVTFIHKQIQKLNNQLSANYGSGIAQFHDSPKAVFK 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
KL+ ++AV NHDYEP A RD IK+ L F ++KDQVIFEK E++ G P
Sbjct: 88 KLIQDYTVEAVYTNHDYEPYAKKRDSQIKEILVQNDIPFKTFKDQVIFEKEEVVKDDGDP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLN-NLVHSSKLHKIINNNIISLNDLGFCKS 180
Y +++ Y +KW E + +L Y S L NL S L ++ SL D+GF +S
Sbjct: 148 YVVYTPYVRKWKENFNPS-VHLVEYDTLSDLRKNLYQSKSLPQL------SLEDMGFEES 200
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSIN-GTSYLSIHLRFGTISIRKLVK 239
++ + + I+ Y R+YP+ GTS L HLRFGT+SIRK+VK
Sbjct: 201 SVKVPDFTVSS-----------ELIQKYEDTRDYPAKEKGTSRLGPHLRFGTVSIRKMVK 249
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
K + + +T + ++LIWR+F+ IL+ +P+ VNK+F+ +YD I W ++
Sbjct: 250 ---KAVDEKNET-------FWNELIWREFFMQILWHFPHTVNKAFRPKYDRIEWRNN--- 296
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ F W G TGYPL+D+ + +LN +GYMHNR+RM+ ASFL K++ I+W+WGE YFA K
Sbjct: 297 EGEFEKWKAGETGYPLVDAGMRELNKTGYMHNRVRMLVASFLCKHLLIDWRWGEAYFAEK 356
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D+++ASN GNWQW+A SG + P+FRIFNP Q KKFD + +I +++P L +LS
Sbjct: 357 LLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPTTQIKKFDKEKEYINQWVPDLQELS--- 413
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP+PI++H ++++ LK Y
Sbjct: 414 ----------------------YPEPIVDHKMARERCLKTY 432
>gi|325981909|ref|YP_004294311.1| deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
Length = 434
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 172/461 (37%), Positives = 258/461 (55%), Gaps = 64/461 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIE-DRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
V VFIFD +IL G+ E D R+ FI+ ++ L L+ S I Y S E+
Sbjct: 32 VLPVFIFDPSIL-----TGLPENDARVTFIYDTLQTLRTQLEERYSSSIALYYGNSIEVF 86
Query: 62 KLVIKLN-IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
+++L+ + AV NHDYEP A RD+ + + LK F +YKD V+FEKNEI +G
Sbjct: 87 DQILRLHSVTAVYANHDYEPYARERDEAVCEWLKARSVAFNTYKDHVLFEKNEIAKDSGG 146
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
PY +++ Y KW KV+S L++Y L N++ K +++ +SL D+GF +S
Sbjct: 147 PYVVYTPYMHKW-RKVQSETT-LRAYSTSEKLGNMI------KHLHSPNLSLTDIGFVRS 198
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
++ I K+L ++Y +R++P++ TS L HLRFGTISIR++ +
Sbjct: 199 AVT---IPASRLDTKLL--------QHYAHDRDFPALTATSLLGPHLRFGTISIRQVFQQ 247
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ D G ++LIWR+F+ IL+ +P+ N SFK YD I W + +
Sbjct: 248 AL-----NTSNDIFG-----NELIWREFFSQILWHFPHTQNSSFKPRYDRIQWRN---SA 294
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+F WCKG TGYPL+D+ + QLN++G MHNR+RM+TASFL K++ I+W+WGE YFA KL
Sbjct: 295 ADFERWCKGMTGYPLVDAGMRQLNATGTMHNRVRMITASFLCKHLLIDWRWGEAYFAEKL 354
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D+D+ASN GNWQW A G + P+FRIFNP Q KKFD +I+ ++
Sbjct: 355 LDYDMASNVGNWQWVAGCGVDAAPYFRIFNPETQIKKFDKNFSYIQTWV----------- 403
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ W+ + YP P+++H+ ++ L+ Y
Sbjct: 404 -NDWRTPT-------------YPAPMIKHTDARARCLETYQ 430
>gi|340619934|ref|YP_004738387.1| deoxyribodipyrimidine photo-lyase [Zobellia galactanivorans]
gi|339734731|emb|CAZ98108.1| Deoxyribodipyrimidine photo-lyase [Zobellia galactanivorans]
Length = 436
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 162/411 (39%), Positives = 250/411 (60%), Gaps = 37/411 (9%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYD-SDLIIRYAIASKEIK 61
V +FIFDK IL+ L +D R+ FIF+ + + LQ+ + S + + Y A K
Sbjct: 32 VMPIFIFDKEILENLPK----DDARVTFIFERLQAMRDTLQDDNHSSIALYYGTAESVFK 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L+ IDAV NHDYEP A RD+ +K+ L F S+KDQVIFEK++IL G P
Sbjct: 88 NLLETYTIDAVYTNHDYEPYAQKRDQAVKELLASKEVGFHSFKDQVIFEKDDILKNDGDP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y+ KW +++K +L+ + +Y ++L+ +++L + SL+D+GF S+
Sbjct: 148 YIVYTPYKNKWKSLFEADK-HLKIHYTSTYRDHLLRNTRLPNL------SLSDMGFETSS 200
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSI-NGTSYLSIHLRFGTISIRKLVKL 240
+ + + Y RNYP+I NGTS L HLRFGT+S+RK++K
Sbjct: 201 IQVPDYTLTPT-----------LVAEYEDTRNYPAIENGTSRLGPHLRFGTVSVRKMMK- 248
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
K I + + + ++LIWR+F+ IL+ YP V+++FKK+YD I W ++ +
Sbjct: 249 --KAIAEKNEV-------FWNELIWREFFMQILWHYPRTVHEAFKKKYDRISWRNN---E 296
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W KG TG+ L+D+ + +LN++GYMHNR+RM+ ASFL K++ I+W+WGE YFA KL
Sbjct: 297 GEFEKWKKGETGFKLVDAGMRELNATGYMHNRVRMLVASFLCKHLLIDWRWGEAYFAEKL 356
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQ 411
D++++SN GNWQW++ SG + P+FRIFNP+ Q KFD +I K++P+
Sbjct: 357 LDYEMSSNVGNWQWASGSGVDAAPYFRIFNPMTQVDKFDKDHTYISKWVPE 407
>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 475
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 167/469 (35%), Positives = 252/469 (53%), Gaps = 30/469 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D +IL+ + I R+ ++ + EL S L+I + S+ I
Sbjct: 31 VIGVFCLDPDILE----RDDIAPARVTYMMGCLQELQQRYAEAGSQLLILHQNPSQGIPT 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L LN AV+ N D EP A RD+ ++ L+ G S+ DQ++ EI +G PY
Sbjct: 87 LADTLNAKAVVWNRDVEPYARTRDRTVQDALEEKGIAVESFWDQLLHAPGEIRTNSGNPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN----NIISLNDLGFC 178
+++ + K W ++ K+ P +S N + ++ + + +LGF
Sbjct: 147 KVYTPFWKNWKDQAKA-------APAESLKNGEGLTETEQDVVKKVGVMELPTAKELGFT 199
Query: 179 KSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
N SL ++ G AK L F + I +Y RN P+I+GTS LS L+FG I IR +
Sbjct: 200 WDN--SLMLEPGEKAAKQRLEEFCDRAIDDYQHQRNLPAIDGTSRLSAALKFGAIGIRTV 257
Query: 238 VKLIFKFIKKHYKTDC-IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ I++ + G TW +L WR+FYQ LY +P + + ++ ++N W+++
Sbjct: 258 WQATQTAIERSRSDETRDGIQTWQQELAWREFYQHALYFFPELASGPYRDTFENFPWDNN 317
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 318 QTL---FQAWCEGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQWGETYF 374
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
KL D DLA+NNG WQWSASSG +P RIFNP Q++K+D G +IR++LP+LS L
Sbjct: 375 MQKLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDPDGEYIRQWLPELSSLD 433
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
K + + K SS + G YP+PI++H +K +RY K
Sbjct: 434 TKDLVTG-KISSDECSSCG------YPEPIVDHKKRQKEFKQRYQQQKG 475
>gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
Length = 436
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 175/460 (38%), Positives = 256/460 (55%), Gaps = 62/460 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN-YDSDLIIRYAIASKEIK 61
V +FIFD IL Q D R+ FI+ +I L+ N++ + S + I + +
Sbjct: 32 VLPIFIFDTEIL----CQVPKNDARVNFIYNTIETLNTNIKKKHKSSIAIFHGKPIEIFN 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L+ K IDAV NHDYEP A+ RD IK+ L F +YKDQVIFEKNEI+ P
Sbjct: 88 TLIKKHTIDAVFANHDYEPHALKRDTAIKELLANNSISFHTYKDQVIFEKNEIIKSDKSP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y+ KW E K +L++ NN V+++ L L D+GF S+
Sbjct: 148 YVVYTPYKNKWKENFDP-KIHLKNSSNCLESNNFVNNTNLP------FFELRDIGFESSS 200
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYP-SINGTSYLSIHLRFGTISIRKLVKL 240
++ + ++ I I+ Y RNYP + NGTS + HLRFGT+SIRK+VK
Sbjct: 201 ITV---------PEFIIT--ITFIEGYETTRNYPGATNGTSKIGPHLRFGTVSIRKIVKH 249
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
K + W ++LIWR+F+ IL+ +PN VN +F+ +YD I W ++ +
Sbjct: 250 AINSDNKVF---------W-NELIWREFFMQILWHFPNTVNNAFRPKYDRIEWRNN---E 296
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W G TGYPL+D+ + +LN++G+MHNR+RM+TASFL K++ I+W+WGE YFA KL
Sbjct: 297 AEFEKWKTGQTGYPLVDAGMRELNATGFMHNRVRMLTASFLCKHLLIDWRWGEAYFAEKL 356
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
DFDL++N GNWQW+A SG + P+FRIFNP Q KFD Q ++ +++P+L +
Sbjct: 357 LDFDLSANVGNWQWAAGSGVDAAPYFRIFNPSTQIDKFDKQKTYVNQWVPELQEF----- 411
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
NYP I++H +++ LK Y
Sbjct: 412 --------------------NYPTQIVDHKFARERCLKVY 431
>gi|390955135|ref|YP_006418893.1| deoxyribodipyrimidine photolyase [Aequorivita sublithincola DSM
14238]
gi|390421121|gb|AFL81878.1| deoxyribodipyrimidine photolyase [Aequorivita sublithincola DSM
14238]
Length = 434
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 161/418 (38%), Positives = 244/418 (58%), Gaps = 39/418 (9%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL+ L +D R+ FIF+++ ++ LQ S + + + + K+
Sbjct: 32 VIPIFIFDSEILNELPK----DDARLTFIFETLQKMRTELQEQGSSIALYHGKPEQIFKQ 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
++ + ++ V+ N DYEP A RD I+ L F+++KDQVIFEK+E++ G PY
Sbjct: 88 IISEFDVQNVITNRDYEPYAKKRDAQIETLLAEKEIGFYTFKDQVIFEKDEVVKNDGDPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQS-YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+++ Y K W EK K K Y Y +L NL +S+L + S+ND+GF KS
Sbjct: 148 IVYTPYMKIWKEKYK--KEYDSKIYYTNEFLKNLYQNSRLPNL------SMNDIGFKKSK 199
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ S I+ Y RN+P+ + TS+L HLRFGT+SIRK++K
Sbjct: 200 IEIPEYDVTPST-----------IQEYEKRRNFPAEDATSHLGPHLRFGTVSIRKMIK-- 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K + +LIWR+F+ IL+ +P V +FKK+YD I W ++ ++
Sbjct: 247 --------KATAEQNEVFWQELIWREFFMQILWHFPETVENAFKKKYDRIEWRNN---EE 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W +G TGYPL+D+ + +LN +GYMHNR+RMV ASFL K++ I+W+WGE YFA KL
Sbjct: 296 EFKKWKEGKTGYPLVDAGMRELNETGYMHNRVRMVVASFLCKHLLIDWRWGEAYFAEKLL 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
D++++SN GNWQW+A SG + P+FRIFNP Q +KFD +I+K++P+ ++KY
Sbjct: 356 DYEMSSNIGNWQWAAGSGVDAAPYFRIFNPTTQIEKFDKDYKYIKKHVPEFG--TDKY 411
>gi|88802270|ref|ZP_01117797.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
23-P]
gi|88781128|gb|EAR12306.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
23-P]
Length = 434
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 161/415 (38%), Positives = 248/415 (59%), Gaps = 37/415 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN-YDSDLIIRYAIASKEIK 61
V +FIFD++ILD L+ ED R+ FI+ ++ ++ L+ + S + + + S +
Sbjct: 32 VLPIFIFDEDILDKLQK----EDARLNFIYDTLQDMRAILEKKHGSSIAMLHGNPSAIFE 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
KL+ + +I V N DYEP A RD I+ L G F ++KDQVIFEKNE++ K G P
Sbjct: 88 KLISEYSIHTVFTNRDYEPYATERDNKIQALLSSNGIHFDTFKDQVIFEKNEVVKKDGLP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ + K W E+ K+ L Y S+L NL+ +++L + L+D+GF
Sbjct: 148 YKVYTPFMKVWKEQFKTYN--LDFYYTSSFLENLIQNTELPNL------HLSDIGF---E 196
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
++ IK K+ I+ Y RN+P+++ TS L HLRFGT+S+RK+++
Sbjct: 197 VAKQKIKKHTVTPKL--------IQTYEETRNFPALDSTSRLGPHLRFGTVSVRKMME-- 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K I + + + +LIWR+F+ IL+ +P SFK +YD I W ++ +
Sbjct: 247 -KAISEKNEI-------FWQELIWREFFMQILWHFPYTSKNSFKPKYDRIEWRNN---EA 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYPL+D+ + QLN +G+MHNR+RM+ SFL K++ I+W+WGE YFA KL+
Sbjct: 296 EFNKWCQGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFLCKHLLIDWRWGEAYFAKKLH 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
D+++ASN GNWQW A SG + P+FRIFNP Q KKFD +I+K++P +L+
Sbjct: 356 DYEMASNVGNWQWVAGSGVDAAPYFRIFNPTTQIKKFDKDLAYIKKWVPNFQELT 410
>gi|149372178|ref|ZP_01891448.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
SCB49]
gi|149354945|gb|EDM43507.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
SCB49]
Length = 435
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 160/417 (38%), Positives = 251/417 (60%), Gaps = 37/417 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL+ L +D R+ FIF ++ ++ LQ S L + K+
Sbjct: 32 VLPIFIFDSEILNELPK----DDARVTFIFNTLQKMRDALQEKGSSLAMYQGKPLDIYKQ 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ ++ V+ NHDYE A RD+ IK L F+++KDQVIFEKNE++ G PY
Sbjct: 88 LIKDFDVQNVITNHDYEVYAQDRDEEIKTFLAQKDIDFYTFKDQVIFEKNEVVKDNGDPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ Y+ KW +K +L+ + +L+ L+ S+L + SL+D+GF KS+
Sbjct: 148 VVYTPYKNKWKAAFNEDK-HLKIHYTSQHLDALIEHSRLPNL------SLSDIGFTKSS- 199
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
I+ + + L I+ Y RN+P+++GTS+L HLRFGT+S+RK+++
Sbjct: 200 ----IEVPSYDVRPTL------IQEYENTRNFPAVDGTSHLGPHLRFGTVSVRKMMR--- 246
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
K I + +T ++++LIWR+F+ IL+ +P + +F+ +YD I W ++ ++
Sbjct: 247 KAISEKNET-------FMNELIWREFFMQILWHFPKTQHNAFRSKYDRITWRNN---EEE 296
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W KG TGY L+D+ + +LN +GYMHNR+RM+ ASFL K++ I+W+WGE YFA KL D
Sbjct: 297 FEKWKKGETGYLLVDAGMRELNKTGYMHNRVRMLVASFLCKHLLIDWRWGEAYFAEKLLD 356
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
++ +SN GNWQW+A SG + P+FRIFNPI Q KFD +IRK++P+ ++KY
Sbjct: 357 YEQSSNVGNWQWAAGSGVDAAPYFRIFNPITQVDKFDKDKTYIRKWIPEFE--TDKY 411
>gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
Length = 480
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 256/465 (55%), Gaps = 22/465 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V V+I D + R G ++ S+ L+ +LQ +L + A +++
Sbjct: 34 VIPVYILDDDAPGDWRPGGASR----WWLHHSLASLASDLQQLGGELALMKGEAQEQLDA 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + D V N YEP A RD+ IK LK G + S+ +I E +I KTG PY
Sbjct: 90 LIEQTGADTVFWNRLYEPWARKRDEAIKSSLKDRGVRARSFNGSLIVEPWDIATKTGNPY 149
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL-GFCKSN 181
+F+ + K +K++ + L H L + + + D G + N
Sbjct: 150 KVFTPFWKS----LKADHTPAEPTGRPDALQLHAHEGGLSLDDLDLLPTKPDWSGGLQEN 205
Query: 182 LSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ G + A L F+K + +Y+ R+ P +GTS LS HL FG IS R+
Sbjct: 206 WTP-----GEAAAHGRLGQFLKAAVSDYSDRRDLPGQSGTSRLSPHLHFGEISPRQ---- 256
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
++ +K+ G T+LS++ WR+F +LY +P++ +F+ ++D W+ +
Sbjct: 257 VWHAVKQSDHARTGGADTYLSEIAWREFSYNLLYHFPDLPEANFQSKFDAFEWDE---CE 313
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
W KG TGYP++D+ + +L ++G+MHNR+RM+ ASFLIK++ I+W+ GE++F + L
Sbjct: 314 DKLKAWQKGQTGYPIVDAGMRELWATGWMHNRVRMIVASFLIKDLFIHWRRGEDWFWDTL 373
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D DLASN +WQW+A SG + P+FR+FNP+ QS+KFD +G ++RK++P+L+ L +K I
Sbjct: 374 VDADLASNAASWQWTAGSGADAAPYFRVFNPVGQSEKFDPKGDYLRKWIPELADLPDKVI 433
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
H+PW A L +AG+ LG+ YP+PI++H ++K L + IK+
Sbjct: 434 HAPWTAEKSVLSRAGVTLGETYPEPIVDHGEARKRALAAFEKIKD 478
>gi|374594255|ref|ZP_09667260.1| DNA photolyase FAD-binding [Gillisia limnaea DSM 15749]
gi|373872330|gb|EHQ04327.1| DNA photolyase FAD-binding [Gillisia limnaea DSM 15749]
Length = 434
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 161/413 (38%), Positives = 243/413 (58%), Gaps = 36/413 (8%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ V +FIFD IL+ L +D R+ FI +++ ++ LQ S L I + +
Sbjct: 30 LPVLPIFIFDTEILERLPK----DDARVSFIHENLQKMRKELQKNGSSLAIYHGKPVEVF 85
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
K L+ I V N DYEP A RD I+K L+ +F ++KDQVIFEK+E++ K G
Sbjct: 86 KDLLKNYKIQQVFTNRDYEPYAKKRDSEIEKLLESETVQFHTFKDQVIFEKDEVVKKDGD 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
PY++++ Y + W EK K K L+ + ++NNLV +S+L + SL+D+GF S
Sbjct: 146 PYAVYTPYMRIWKEKFK--KIDLEIHYTSQHINNLVQNSRLPNL------SLSDIGFETS 197
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ L + S I+ Y RNYP+++ TS+L HLRFGT+ IRK+VK
Sbjct: 198 KIKVLDYEVTPS-----------LIQEYEAKRNYPALDATSHLGPHLRFGTVGIRKMVK- 245
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
K I + + + ++LIWR+F+ IL +P + N+SFKK+YD I W ++ +
Sbjct: 246 --KAISEKNEI-------FWNELIWREFFMQILSHFPRIENESFKKKYDRIEWHNN---E 293
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W G TGYP++D+ + QLN +G+MHNR+RM+ SFL K++ I+W+WGE YFA KL
Sbjct: 294 AEFELWKTGKTGYPMVDAGMRQLNETGFMHNRVRMLVGSFLCKHLLIDWRWGEAYFAEKL 353
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
D+++ASN GNWQW A G + P+FRIFNP Q K +D + +I++Y+ +
Sbjct: 354 LDYEMASNVGNWQWVAGCGVDAAPYFRIFNPTTQIKDYDKEHAYIKEYVKEFG 406
>gi|86607703|ref|YP_476465.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556245|gb|ABD01202.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 487
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 160/477 (33%), Positives = 260/477 (54%), Gaps = 36/477 (7%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VFIFD +L + + R+ F+ +++ EL LI R S E++
Sbjct: 30 QVVPVFIFDPQML----RRSDMAPARVAFLLQALQELQERYAQMGIPLIWRLGDPSVELR 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L I L AV N D EP A+ ++ ++ L G + FSY+D ++ E+L + G+P
Sbjct: 86 CLAIDLGARAVFWNADGEPFALQQESRVQASLAAAGIQSFSYQDMLLHGPGEVLTQAGEP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF-CKS 180
YS+F+ + ++W K + YP+ L + + + +L DLGF C
Sbjct: 146 YSVFTPFWRRWASLPKPD-----PYPIPKGLQ------PVSGLKAQPLPTLADLGFVCDQ 194
Query: 181 NLSSLGIKTGASGAKILLNNFIK--KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+ + G A+ LL +F + +I +Y RN+P+ GTS LS HL +GTI IR++
Sbjct: 195 RIPAAGEAA----AQALLEDFCQGLRILDYERARNFPAEPGTSLLSPHLCWGTIGIRQVW 250
Query: 239 KLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + + + TW +L WR+FY+ +L +P+V ++++ +D + W DN
Sbjct: 251 QATREVEAEVRSQEAESSLQTWRQELCWREFYKHVLAHWPHVETGAYRRAFDALEW--DN 308
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ F WC G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ I+W+WGE YF
Sbjct: 309 R-QDWFQAWCTGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLLIDWRWGERYFM 367
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D DLA+NNG WQWSAS G +P RIFNP Q+ ++D +G +IR+YLP+L++L
Sbjct: 368 QKLVDGDLAANNGGWQWSASVGTDPKP-LRIFNPATQAARYDPEGEYIRRYLPELARLDT 426
Query: 418 KYI----HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+ P A + + ++ YP PI++H + ++ +RY ++ +R+
Sbjct: 427 PALLWVGDDPKGAWALRERRSC-----GYPDPIVDHKVQQQAFKRRYQAVQQAYSRS 478
>gi|330752085|emb|CBL80595.1| deoxyribodipyrimidine photolyase [uncultured Leeuwenhoekiella sp.]
Length = 434
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/459 (35%), Positives = 256/459 (55%), Gaps = 61/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQN-YDSDLIIRYAIASKEIK 61
V +FIFDK ILD L +D R+ FI++++ ++ LQN + S L + Y K
Sbjct: 31 VLPIFIFDKEILDKLPK----DDARVTFIYETLQKMRDRLQNDHTSSLALFYGKPIDIWK 86
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+++ + V N DYEP A RD+ I + F ++KDQVIFEK++++ G+P
Sbjct: 87 QILKDYEVKEVYTNRDYEPYAKRRDEEISSLFEEKDIDFKTFKDQVIFEKDDVVKGDGEP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y+ KW+E + L+ + +LNNLV +S+L + +L+++GF S+
Sbjct: 147 YIVYTPYKNKWLETFNEDND-LKIHYTSQHLNNLVENSRLPNL------TLSEMGFKTSS 199
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L + I NY RN+P+ +GTS L HLRFGT+S+RK+VK
Sbjct: 200 LKVPDYDVTPT-----------LIDNYEDTRNFPAQDGTSRLGPHLRFGTVSVRKMVK-- 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K + S+L+WR+F+ ILY YP +N +F+K+YD I W ++ ++
Sbjct: 247 --------KALAENNQVFWSELVWREFFMQILYHYPETINNAFRKKYDRIDWRNN---EE 295
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W G TG+ L+D+ + +LN++GYMHNR+RM+TASFL K++ I+W+WGE YFA KL
Sbjct: 296 EFEKWKTGTTGFLLVDAGMRELNTTGYMHNRVRMLTASFLCKHLLIDWRWGETYFAEKLL 355
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D++ ASN GNWQW+A SG + P+FRIFNP+ Q KFD + +I K++P+
Sbjct: 356 DYEQASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKERKYIEKFIPEYD-------- 407
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP+ +++H +++ LK Y
Sbjct: 408 -----------------TSEYPEKMVDHKEARERCLKTY 429
>gi|89891446|ref|ZP_01202951.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
gi|89516220|gb|EAS18882.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
Length = 440
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 158/416 (37%), Positives = 245/416 (58%), Gaps = 39/416 (9%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQ-NYDSDLIIRYAIASKEIK 61
V +FIFDK ILD L +D R+ FI++ + + NLQ N+DS L Y +
Sbjct: 32 VLPIFIFDKEILDHLPE----DDARVTFIYEELQRMRNNLQENHDSSLATFYGKPLNIWQ 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+++ ++AV N DYEP A RD + F ++KDQVI+EK++I+ G P
Sbjct: 88 EIIDNYEVNAVFTNRDYEPYAQERDLKLTSFFNEQNVAFHTFKDQVIYEKDDIVKDDGDP 147
Query: 122 YSIFSFYQKKWIEKVKSN---KCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
Y +++ Y+ KW+E + + L + YL+N + +S+L + +L+D+GF
Sbjct: 148 YVVYTPYKNKWLENFRKDYGKADNLTIHYTNDYLDNCIKNSRLPNL------NLSDIGFK 201
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSI-NGTSYLSIHLRFGTISIRKL 237
KS++ + I++Y RNYP++ NGTS L ++LRFG +SIRK+
Sbjct: 202 KSSIEIPEYNITPT-----------LIEDYEKTRNYPAMENGTSRLGVYLRFGVVSIRKM 250
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+K K D T++S+LIWR+F+ ILY +P+ V+ +F+ +YD I W ++
Sbjct: 251 MK----------KADLANEKTFMSELIWREFFMTILYHFPHTVDNAFRSKYDRIEWRNN- 299
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ F W G TGY ++D+ + +LN++GYMHNR+RM+ ASFL K++ I+W+WGE YFA
Sbjct: 300 --ESEFEKWKNGQTGYAIVDAGMRELNTTGYMHNRVRMLVASFLCKHLLIDWRWGERYFA 357
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
KL DFDL++N GNWQW+A SG + P+FRIFNPI Q KFD +I++++P+
Sbjct: 358 EKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPITQKDKFDKNYKYIKQWVPEFE 413
>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
Length = 475
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/465 (34%), Positives = 257/465 (55%), Gaps = 32/465 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ +F D NIL+ + R+ ++ + EL + S L+I + I +
Sbjct: 31 IVGLFCLDPNILN----SNEVAPARVTYMLGCLQELKESYSKIGSQLLIVRGEPIEAIPQ 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + L + V + D EP A RD +++EL G +Y DQ++ +IL ++GKPY
Sbjct: 87 LAVALQVTGVFWHKDGEPYARERDGKVEQELLKQGIAVTNYWDQLLHPPEDILTQSGKPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNL--VHSSKLHKIINNNIISL---NDLGF 177
++++ + K W +K K V L+ + + + ++ ++SL DLG+
Sbjct: 147 TVYTPFWKNWSQKPKLE--------VAEKLDRIQGLTAEEIKIAQETGVVSLPTGKDLGY 198
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
L + G + A+ L F ++ I Y RN+P++ GTS LS LRFG I IR
Sbjct: 199 YWDG--ELILTPGETAAREQLEEFSERAIAQYQEQRNFPAVEGTSLLSPALRFGVIGIRT 256
Query: 237 LVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + K Y + TW +L WR+FYQ LY +P + + +++++ + W++
Sbjct: 257 VWQATLEATKNSYSEEVRANIETWQKELAWREFYQHALYHFPQLTVEPYRQQFKDFPWDN 316
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ ++F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE Y
Sbjct: 317 N---PEHFQAWCEGKTGYPMVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEQY 373
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F KL D DLASNNG WQWSAS G +P RIFNP Q+KKFD +G +IR++LP+LS +
Sbjct: 374 FMQKLCDGDLASNNGGWQWSASCGMDPKP-LRIFNPASQAKKFDPEGEYIRQWLPELSSI 432
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+Y+ K + E+ +YP+PI++H+L ++ +RY
Sbjct: 433 DTEYLVRG-KIPDDERERC------DYPQPIVDHNLRQREFKRRY 470
>gi|409123337|ref|ZP_11222732.1| deoxyribodipyrimidine photolyase [Gillisia sp. CBA3202]
Length = 432
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 163/458 (35%), Positives = 248/458 (54%), Gaps = 61/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD ILD L D R+ FIF ++ + LQ+ S L + + + K
Sbjct: 32 VLPIFIFDSEILDDLPKN----DARLSFIFDTLQNIRKELQSSGSSLAMFFGKPAAIFKD 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + ++ + N DYEP A RD+ I+K +F ++KDQVIFEK+E++ G PY
Sbjct: 88 LFDQYDVQKIFTNRDYEPYAKQRDEKIEKLASDNNSEFLTFKDQVIFEKDEVVKSDGDPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ Y K W E+ K K L+ YL+ + +S+L + SL+D+GF S+
Sbjct: 148 VVYTPYMKLWKEEFK--KIDLKVQYTSQYLDKFLQNSRLPNL------SLSDIGFESSSQ 199
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
S I++Y RNYP+ + TS++ HLRFGT+ IRK++K
Sbjct: 200 KVPDYDVTPS-----------LIQDYEAKRNYPAKDATSHIGPHLRFGTVGIRKIMK--- 245
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
K I + + + +LIWR+F+ ILY +PN +FKK+YD I W ++ K+
Sbjct: 246 KAIAEKNEV-------FWQELIWREFFMQILYHFPNTATDAFKKKYDRISWRNN---KEE 295
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W G TGYP++D+ + QLN SG+MHNR+RM+ SFL K++ I+W+WGE YFA KL D
Sbjct: 296 FEKWKSGTTGYPMVDAGMRQLNESGFMHNRVRMLVGSFLCKHLLIDWRWGEAYFAEKLLD 355
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+++ASN GNWQW A SG + P+FRIFNP Q+K +D +I+K++P+
Sbjct: 356 YEMASNVGNWQWVAGSGVDAAPYFRIFNPTTQAKDYDKDLEYIKKWIPEYGT-------- 407
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+YPK +++H +++ L Y
Sbjct: 408 -----------------DDYPKEMVDHKEARERALSAY 428
>gi|86605487|ref|YP_474250.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86554029|gb|ABC98987.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 479
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 255/472 (54%), Gaps = 36/472 (7%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VF+FD +L + + R+ F+ +++ EL L+ R + E++
Sbjct: 30 QVVPVFVFDPQLL----QRADMAPARVAFLLQALQELQERYAQMGIPLLWRRGDPAVELR 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L +L AV N D +P A ++ ++ L G FSY+D ++ E+L + G+P
Sbjct: 86 QLAAELGAQAVFWNEDLDPWARQQESRVRASLAEAGIPSFSYQDMLLHGPGEVLTQAGEP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF-CKS 180
YS+F+ + ++W K + +P+ L + + + SL DLGF C
Sbjct: 146 YSVFTPFWRRWSSLPKPD-----PFPIPKSLQ------AVSSLKAQPLPSLADLGFVCNQ 194
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIK--NYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+ + G S A+ LL +F + ++ Y R++P+ GTS LS HL +GTI IR++
Sbjct: 195 RIPA----AGESVAQGLLEDFCQGLRIFEYGRARDFPAEQGTSLLSPHLCWGTIGIRRVW 250
Query: 239 KLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + + + TW +L WR+FY+ +L +P+V + ++++ +D + W DN
Sbjct: 251 QATCEVEAEARSEEAESSLKTWRQELCWREFYKHVLVHWPHVESGAYRRAFDALEW--DN 308
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ F WC G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ I+W+WGE YF
Sbjct: 309 R-QDWFQAWCAGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLLIDWRWGERYFM 367
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D DLA+NNG WQWSA G +P RIFNP Q+ ++D +G +IR+YLP+L+ L
Sbjct: 368 QKLVDGDLAANNGGWQWSAGVGTDPRP-LRIFNPATQAARYDPEGEYIRRYLPELAGLDT 426
Query: 418 KYI----HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ P S+ L++ YP PI++H + ++ +RY ++
Sbjct: 427 PALLWVGDDP--KGSWALQERRRC---GYPDPIVDHKVQQQEFKRRYQAVQQ 473
>gi|428220832|ref|YP_007105002.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
gi|427994172|gb|AFY72867.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
Length = 481
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 256/477 (53%), Gaps = 40/477 (8%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
E +FIFD +IL + G +++F+ + EL + + S+L+ Y + +
Sbjct: 31 ETVGIFIFDPDILKSPETGG----GKVDFMLGCLKELQQSYRELGSELLCFYGNPKEVLA 86
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK-TGK 120
KL L + N D EP AI RD+ + +EL IG + + D + I K TG+
Sbjct: 87 KLAQVLKPQRLFFNQDVEPSAIKRDQAVIQELSAIGIEVKGFLDIALHAPQAIATKSTGE 146
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
PY ++S + K WI + K + P L L + L I + SL +LGF +
Sbjct: 147 PYKVYSPFWKNWITQPKPS-----PLPKPQKLLGLKNCDGLDAI---PLPSLAELGFSHN 198
Query: 181 NLSSLGIKTGASGAKILLNNFI--KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+G A+ LL F +K+ NY +R++P+I+GTS LS HLRFGTI IR
Sbjct: 199 QTIP---ASGEEIAQKLLTEFCDSQKLYNYKKDRDFPAIDGTSNLSPHLRFGTIGIRDCW 255
Query: 239 KLIFKFI-----------KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKE 287
+ + G TW +L WR+FYQ +L+ +P + +++ +
Sbjct: 256 AATVAVMIDAEADITSEQDQRNAQKLEGIQTWRQELAWREFYQHVLFHFPQLSQSAYRPQ 315
Query: 288 YDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGI 347
W+ ++ + F W G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ +
Sbjct: 316 MQRFAWDQNH---EYFQAWSNGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLIL 372
Query: 348 NWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRK 407
NW+WGE YF KL D DLA+NNG WQWSASSG +QP RIFNP Q+ KFD +G +IR+
Sbjct: 373 NWQWGELYFMQKLIDGDLAANNGGWQWSASSGMDTQP-LRIFNPSSQALKFDPEGTYIRR 431
Query: 408 YLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+LP+L L+ + S S+Y+L+K+ NYP PI++H++ ++ +RY K
Sbjct: 432 WLPELVHLTTAELLSG-NISNYQLQKS------NYPAPIVDHAIQQRKFKERYQLCK 481
>gi|423065610|ref|ZP_17054400.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
gi|406713053|gb|EKD08228.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
Length = 474
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 164/457 (35%), Positives = 249/457 (54%), Gaps = 27/457 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VF D IL S I R+ ++ + L + Q S L+I ++ ++
Sbjct: 30 QVVGVFCLDPAIL----SGDDIAPVRVAYMIGCLQCLQRDYQRGGSQLLIIQDNPAQGLR 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
KL + L AV N D EP A RD+ +++ L +G K ++ DQV+ I + +P
Sbjct: 86 KLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEVGIKVETFWDQVLHSPEAIFTGSKEP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y +KWI++ K C +KS + + + DLGF S
Sbjct: 146 YKVYTPYWRKWIQQPKPEPCDT----LKSRGLTEAQEKAAREAGAIALPTAKDLGFIWSE 201
Query: 182 LSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL--- 237
++ G + A L F + I Y+ RN+P+I+GTS LS LRFG I IR L
Sbjct: 202 --PFILEPGETAASDRLQLFCDRAIYEYDEGRNFPAIDGTSLLSPALRFGAIGIRTLWQK 259
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ I + D I TW ++ WR+FYQ LY +P + +F++ +D W SDN
Sbjct: 260 TQEIMALTRSDEARDHIQ--TWQQEIAWREFYQQALYHFPALATGAFRQPFDRFPW-SDN 316
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+++F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 317 --QEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFM 374
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+L D DLASNNG WQWS+SSG +P RIFNP Q++K+D + +IR++LP+L L
Sbjct: 375 QRLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQAQKYDPEAEYIRQWLPELRNLET 433
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKK 454
++ + K SS + G YP+PI++H+ +K
Sbjct: 434 AHLVTG-KISSSDRQACG------YPQPIVDHNRQQK 463
>gi|428320773|ref|YP_007118655.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
gi|428244453|gb|AFZ10239.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
Length = 484
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 164/473 (34%), Positives = 262/473 (55%), Gaps = 32/473 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F D+NIL+ + + R+ ++ + +LS + S L+I I K
Sbjct: 34 VVGIFCLDRNILN----RDDVAPARVTYMIGCLQKLSSRYREAGSQLLIIQDDPILGIPK 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +N AV N D EP A RD+ + L+ G + ++ DQV+ +EI + TG PY
Sbjct: 90 LATAINAQAVFWNWDVEPYAKQRDRSVSNALQQAGIQVQNFWDQVLHAPDEIRSGTGTPY 149
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN------DLG 176
++++ + KKW K K+ +++ P+ +YL + + + I N ++ LG
Sbjct: 150 TVYTPFWKKWNSKPKAQP--VETLPI-TYLELMTGLTAEEQAIANQAGAMETVPTALSLG 206
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
F N L I+ G A+ L F + I Y RN+P+INGTS LS L+FG I IR
Sbjct: 207 FIWEN--PLVIEPGEDAAQQKLEEFCDRAIYEYQGQRNFPAINGTSQLSAALKFGAIGIR 264
Query: 236 ---KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNIL 292
+ +++ + + C TW ++ WR+FYQ +Y +P + + +++ + +
Sbjct: 265 TVWQATQIVMDTCRS--EEACTSIRTWQQEIAWREFYQHAMYNFPELADGPYRQAFKDFP 322
Query: 293 WESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWG 352
WE+D +K F WC+G TGYP+ID+A+ QLN +G+MHNR RM+ ASFL K++ INW+WG
Sbjct: 323 WEND---EKLFQAWCRGKTGYPIIDAAMRQLNQTGWMHNRCRMIVASFLTKDLMINWQWG 379
Query: 353 ENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQL 412
E YF KL D DL++NNG WQWSASSG +P RIFNP Q++KFD +G +IR ++P+L
Sbjct: 380 EKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPGSQAQKFDPEGEYIRHWVPEL 438
Query: 413 SKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
++ K + + + LE+ + +YP PI++H+ ++ + Y KN
Sbjct: 439 RRVDTKVLLT---GNISSLERRLL----HYPSPIVDHNEQQRKFKELYAQQKN 484
>gi|376004880|ref|ZP_09782483.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
gi|375326730|emb|CCE18236.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
Length = 474
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 164/460 (35%), Positives = 252/460 (54%), Gaps = 33/460 (7%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VF D IL S I R+ ++ + L + Q S L+I ++ ++
Sbjct: 30 QVVGVFCLDPAIL----SGDDIAPVRVAYMIGCLQCLQRDYQRGGSQLLIIQDNPAQGLR 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
KL + L AV N D EP A RD+ +++ L +G K ++ DQV+ I + +P
Sbjct: 86 KLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEVGIKVETFWDQVLHSPEAIFTGSKEP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL---NDLGFC 178
Y +++ Y +KWI++ K C + + + ++ + I+L DLGF
Sbjct: 146 YKVYTPYWRKWIQQPKPEPC-------DTLKSRGLTEAQEKAALEAGAIALPTAKDLGFI 198
Query: 179 KSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
S ++ G + A L F + I Y+ RN+P+I+GTS LS LRFG I IR L
Sbjct: 199 WSE--PFILEPGETAASDRLQLFCDRAIYEYDQGRNFPAIDGTSLLSPALRFGAIGIRTL 256
Query: 238 ---VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
+ I + D I TW ++ WR+FYQ LY +P + +F++ +D W
Sbjct: 257 WQKTQEIMALTRSDEARDHIQ--TWQQEIAWREFYQQALYHFPALATGAFRQPFDRFPW- 313
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
SDN +++F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE
Sbjct: 314 SDN--QEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEK 371
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF +L D DLASNNG WQWS+SSG +P RIFNP Q++K+D + +IR++LP+L
Sbjct: 372 YFMQRLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQAQKYDPEAEYIRQWLPELRN 430
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKK 454
L ++ + K SS + G YP+PI++H+ +K
Sbjct: 431 LDTAHLVTG-KISSSDRQACG------YPQPIVDHNRQQK 463
>gi|407958302|dbj|BAM51542.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 482
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 244/466 (52%), Gaps = 26/466 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ VF D IL + R+ ++ + L + Q S+L++ A + + K
Sbjct: 39 IVGVFCLDNKIL----QAEDMAPARVAYLLGCLQSLQDHYQRLGSELLVFQADPVQLLPK 94
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L V D EP A RD + + L+ G + DQ++ E+L + G PY
Sbjct: 95 LANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERGLAIATEWDQLMHHPGEVLTQAGSPY 154
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSK--LHKIINNNIISLNDLGFCKS 180
++++ + K W + K++ P L L + K L + I L DLGF
Sbjct: 155 TVYTPFWKNWSQLPKTSPV-----PTPKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWD 209
Query: 181 NLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
L + G A+ L+ F+ ++ Y NRN+P+++GTS LS L+FG IS R L +
Sbjct: 210 Q--PLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPALDGTSQLSAALKFGVISPRTLWQ 267
Query: 240 LIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ ++ + TW +L WR+FYQ LY +P + ++ + WE +
Sbjct: 268 TTLEAWEQSRSEEARASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQEFPWEEN-- 325
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ +F WC+G TGYP+ID+A+ QLN +G+MHNR RM+ ASFLIK++ +NW+WGE YF
Sbjct: 326 -QDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQ 384
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR +LPQL++
Sbjct: 385 TLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPHTQAQKFDPEGEYIRTWLPQLARFDTG 443
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ + KL G NYP+PI++H+ ++ +RY +K
Sbjct: 444 DL------LTGKL-TPGSRRSVNYPEPIVDHNQQQREFKRRYQLVK 482
>gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|451814540|ref|YP_007450992.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|2499552|sp|Q55081.1|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780509|gb|AGF51478.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 488
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 244/466 (52%), Gaps = 26/466 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ VF D IL + R+ ++ + L + Q S+L++ A + + K
Sbjct: 45 IVGVFCLDNKIL----QAEDMAPARVAYLLGCLQSLQDHYQRLGSELLVFQADPVQLLPK 100
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L V D EP A RD + + L+ G + DQ++ E+L + G PY
Sbjct: 101 LANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERGLAIATEWDQLMHHPGEVLTQAGSPY 160
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSK--LHKIINNNIISLNDLGFCKS 180
++++ + K W + K++ P L L + K L + I L DLGF
Sbjct: 161 TVYTPFWKNWSQLPKTSPV-----PTPKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWD 215
Query: 181 NLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
L + G A+ L+ F+ ++ Y NRN+P+++GTS LS L+FG IS R L +
Sbjct: 216 Q--PLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPALDGTSQLSAALKFGVISPRTLWQ 273
Query: 240 LIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ ++ + TW +L WR+FYQ LY +P + ++ + WE +
Sbjct: 274 TTLEAWEQSRSEEARASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQEFPWEEN-- 331
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ +F WC+G TGYP+ID+A+ QLN +G+MHNR RM+ ASFLIK++ +NW+WGE YF
Sbjct: 332 -QDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQ 390
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR +LPQL++
Sbjct: 391 TLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPHTQAQKFDPEGEYIRTWLPQLARFDTG 449
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ + KL G NYP+PI++H+ ++ +RY +K
Sbjct: 450 DL------LTGKL-TPGSRRSVNYPEPIVDHNQQQREFKRRYQLVK 488
>gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
Length = 475
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 242/458 (52%), Gaps = 25/458 (5%)
Query: 13 ILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAV 72
ILDP G ++ S+ L +L + LI+R S+ + L + + A+
Sbjct: 36 ILDPADRPGAASR---WWLHGSLEALGESLARLGAPLILRRGSPSEILPALTAETDARAI 92
Query: 73 MINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKW 132
N YEP I RDK +K L G + S+ ++ E ++ ++G PY +F+ + +
Sbjct: 93 FWNRLYEPHLIGRDKALKSALTAQGIEVESFNGSLLAEPWQVRTQSGDPYKVFTPFWRS- 151
Query: 133 IEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT--- 189
L P + + L + ++++ S + L K + + G++
Sbjct: 152 ----------LAQMPFPAPHPAPKKCAGLSPLPSDDLASWS-LRPSKPDWAG-GLRATWQ 199
Query: 190 -GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ L FI + Y R+ P+ GTS LS HL +G +S ++ +
Sbjct: 200 PGERAAQSRLAAFIDDAMVGYREARDIPAAEGTSRLSPHLHWGEVSPHRIWSAVEAATAA 259
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
H G +L +L WRDF +L+ +P++ +++K ++D W+ D A F W
Sbjct: 260 HPSGAEAGR-AFLRELAWRDFAHHLLFHWPDIARENWKSQFDAFPWKEDTAA---FTAWT 315
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP++D+ + QL +G+MHNR+RM+ ASFL+K++ ++W+ G +F N L D DLA
Sbjct: 316 KGETGYPIVDAGMRQLWQTGWMHNRVRMIAASFLVKHLMVDWRRGAEWFENTLVDADLAV 375
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N +WQW A SG + P+FRIFNP++Q +KFD G ++R ++P+L+KL ++IH PW A
Sbjct: 376 NRASWQWVAGSGADAAPYFRIFNPVLQGEKFDGDGAYVRAFVPELAKLDARFIHKPWAAP 435
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+L KAGI LG+ YPKP+++H ++ L Y I+N
Sbjct: 436 DAELSKAGIALGRTYPKPLVDHGHARARALAAYEQIRN 473
>gi|383322123|ref|YP_005382976.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325292|ref|YP_005386145.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491176|ref|YP_005408852.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436443|ref|YP_005651167.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|339273475|dbj|BAK49962.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|359271442|dbj|BAL28961.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274612|dbj|BAL32130.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277782|dbj|BAL35299.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
Length = 479
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 244/466 (52%), Gaps = 26/466 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ VF D IL + R+ ++ + L + Q S+L++ A + + K
Sbjct: 36 IVGVFCLDNKIL----QAEDMAPARVAYLLGCLQSLQDHYQRLGSELLVFQADPVQLLPK 91
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L V D EP A RD + + L+ G + DQ++ E+L + G PY
Sbjct: 92 LANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERGLAIATEWDQLMHHPGEVLTQAGSPY 151
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSK--LHKIINNNIISLNDLGFCKS 180
++++ + K W + K++ P L L + K L + I L DLGF
Sbjct: 152 TVYTPFWKNWSQLPKTSPV-----PTPKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWD 206
Query: 181 NLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
L + G A+ L+ F+ ++ Y NRN+P+++GTS LS L+FG IS R L +
Sbjct: 207 Q--PLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPALDGTSQLSAALKFGVISPRTLWQ 264
Query: 240 LIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ ++ + TW +L WR+FYQ LY +P + ++ + WE +
Sbjct: 265 TTLEAWEQSRSEEARASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQEFPWEEN-- 322
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ +F WC+G TGYP+ID+A+ QLN +G+MHNR RM+ ASFLIK++ +NW+WGE YF
Sbjct: 323 -QDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQ 381
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR +LPQL++
Sbjct: 382 TLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPHTQAQKFDPEGEYIRTWLPQLARFDTG 440
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ + KL G NYP+PI++H+ ++ +RY +K
Sbjct: 441 DL------LTGKL-TPGSRRSVNYPEPIVDHNQQQREFKRRYQLVK 479
>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
Length = 474
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 163/457 (35%), Positives = 248/457 (54%), Gaps = 27/457 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VF D IL S I R+ ++ + L + Q S L+I ++ ++
Sbjct: 30 QVVGVFCLDPAIL----SGDDIAPVRVAYMIGCLQCLQRDYQRGGSQLLIIQDNPAQGLR 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
KL + L AV N D EP RD+ +++ L +G K ++ DQV+ I + +P
Sbjct: 86 KLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEVGIKVETFWDQVLHSPEAIFTGSKEP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y +KWI++ K C +KS + + + DLGF S
Sbjct: 146 YKVYTPYWRKWIQQPKPEPCDT----LKSRGLTEAQEKAAREAGAIALPTAKDLGFIWSE 201
Query: 182 LSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL--- 237
++ G + A L F + I Y+ RN+P+I+GTS LS LRFG I IR L
Sbjct: 202 --PFILEPGETAASDRLQLFCDRAIYEYDQGRNFPAIDGTSLLSPALRFGAIGIRTLWQK 259
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ I + D I TW ++ WR+FYQ LY +P + +F++ +D W SDN
Sbjct: 260 TQEIMALTRSDEARDHIQ--TWQQEIAWREFYQQALYHFPALATGAFRQPFDRFPW-SDN 316
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+++F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 317 --QEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFM 374
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+L D DLASNNG WQWS+SSG +P RIFNP Q++K+D + +IR++LP+L L
Sbjct: 375 QRLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQAQKYDPEAEYIRQWLPELRNLET 433
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKK 454
++ + K SS + G YP+PI++H+ +K
Sbjct: 434 AHLVTG-KISSSDRQACG------YPQPIVDHNQQQK 463
>gi|384099269|ref|ZP_10000358.1| deoxyribodipyrimidine photo-lyase [Imtechella halotolerans K1]
gi|383833250|gb|EID72715.1| deoxyribodipyrimidine photo-lyase [Imtechella halotolerans K1]
Length = 437
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 165/458 (36%), Positives = 244/458 (53%), Gaps = 61/458 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL SQ D R+ FI+ + EL+ + + + Y
Sbjct: 34 VLPIFIFDPEIL----SQFPENDSRVHFIYNKLQELNKLVSIENRGIAQYYGTVESVFNH 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + +I V N DYEP +I RD+++ L V +S+KDQ+IF KNE+ G PY
Sbjct: 90 LLKEFDIQGVYTNEDYEPASIERDQMVSALLSVHNIPLYSFKDQLIFAKNEVCKPDGSPY 149
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ + KKW E + K + +P S L+ L+ L ++ I +L +
Sbjct: 150 VVYTPFMKKWKENYATQKPLV--HPSDSELSKLLQMDSLPRVSMTEI----ELTTPTHQV 203
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
S I T + + Y + RN PSI G S L HLRFGT+SIRKLV+L +
Sbjct: 204 ESYNIDT-------------EFLDTYALTRNTPSIKG-SVLGPHLRFGTLSIRKLVRLAY 249
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
K+ +L++LIWR+F+ IL+ +P+ + KSFK YD I W ++ +
Sbjct: 250 ASSKQE---------IFLNELIWREFFSSILWHFPHTITKSFKPAYDTIKWRNN---PEE 297
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYPL+D+ + +LN +GYMHNR+RMV ASFL K++ I+W+WGE YFA KL D
Sbjct: 298 FKAWCEGKTGYPLVDAGMRELNKTGYMHNRVRMVVASFLCKHLLIDWRWGEAYFAEKLLD 357
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+++ASN GNWQW A G + P+FRIFNP Q KKFD +I K++ +++ +
Sbjct: 358 YEIASNIGNWQWVAGCGVDAAPYFRIFNPTEQLKKFDSDKKYIHKWVVDINEFT------ 411
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YP PI++HS +++ L Y
Sbjct: 412 -------------------YPHPIVDHSFARERCLATY 430
>gi|307354928|ref|YP_003895979.1| deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM
11571]
gi|307158161|gb|ADN37541.1| Deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM
11571]
Length = 475
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 151/428 (35%), Positives = 238/428 (55%), Gaps = 42/428 (9%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRD 86
R+ F+ +S+ +LS + ++ Y + ++ + + + ++AV + DY P AI R+
Sbjct: 56 RLAFLSESLSDLSGAIAEKGGEIRF-YDEGALKLAEKLCRTGVEAVYMTRDYTPYAIKRE 114
Query: 87 KLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFS-FYQKKWIEKV-KSNKCYLQ 144
+KK GC FF ++ E ++ G+PY +F+ FY+ + V + C Q
Sbjct: 115 NSLKKTCNDAGCSFFPVPGALLNEPEDVRKSDGEPYKVFTPFYRNASLIPVHEPETCTFQ 174
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK--TGASGAKILLNNFI 202
++ + + H D+ F KS + +G + L
Sbjct: 175 NFSREELFDGASH----------------DIPFGKSGTEEAKNRAFSGGRSEGLRLLGET 218
Query: 203 KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL-S 261
++KNY R++P+ TS LS HLRFGT+S+R++ + I +D +G L
Sbjct: 219 GRLKNYEDERDFPAKACTSMLSAHLRFGTVSVREICRRI---------SDTLGPGHGLIR 269
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
QL WRDF+ I Y YP+V F+K ++++ W +K+ F WCKG TG+P+ID+ +
Sbjct: 270 QLYWRDFFTHIAYHYPHVFKGPFQKRFESLHWTD---SKELFDKWCKGMTGFPIIDAGMR 326
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
+LN +GYMHNR R+ ASFL+K++ I+W+ GE YFA+KL D+D + NNGNWQWSAS+GC
Sbjct: 327 ELNDTGYMHNRERLAAASFLVKDLHIDWRSGERYFASKLTDYDPSVNNGNWQWSASTGCD 386
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+QP+FRIFNP +Q KKFD I+IR+++P+LS L K IH+ L+K G +
Sbjct: 387 AQPYFRIFNPWLQQKKFDPDCIYIRRWVPELSDLEPKEIHN--------LDKTGSVPPAG 438
Query: 442 YPKPILEH 449
YP PI++H
Sbjct: 439 YPNPIVDH 446
>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
Length = 477
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/470 (33%), Positives = 255/470 (54%), Gaps = 32/470 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F D IL+ + + R++++ + EL+ N Q S L+I + + K
Sbjct: 31 VVGIFCLDPAILE----KEDVAPARVKYLLACLAELAENYQKAGSQLLIFQGNPLEVLPK 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L + V N D EP A RD + L+ +G K ++ DQ++ ++ ++ KPY
Sbjct: 87 VAESLKVHTVYWNLDVEPYAQQRDHQMAIALRQVGAKIETFWDQLLHAPGKVFTQSKKPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN----NIISLNDLGFC 178
S++S + K W +K K+ PV + + S K+ + + +L DLGF
Sbjct: 147 SVYSPFWKNWSQKSKAA-------PVTALRDCQGLSDAEQKLAKDLGAIALPTLADLGFS 199
Query: 179 KSNLSSLGIKTGASGAKI--LLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
++ + AS ++ NFI+K Y+ +RN+P+ +GTS LS L+FG I IR
Sbjct: 200 WDKPFTVPVGETASLGQLDRFTENFIEK---YDGDRNFPATDGTSRLSAALKFGAIGIRT 256
Query: 237 LVKLIFKFIKK-HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + K G TW +L WR+FYQ L+ +P + +++E+ + WE+
Sbjct: 257 VWQATETALNHCRSKEAEAGVITWQQELAWREFYQHCLFFFPELAQGPYREEFKDFPWEN 316
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
D ++ F WC G TGYP+ID+A+ QLN +G+MHNR RM+ ASFL K++ I+W+WGE Y
Sbjct: 317 D---EEKFQAWCAGQTGYPIIDAAMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEKY 373
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F L D DLA+NNG WQWSASSG +P RIFNP Q++KFD + +IR +LP+LS L
Sbjct: 374 FMQTLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQAQKFDPEADYIRHWLPELSGL 432
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ + + +L + +YP+PI+EH + ++ + Y +K+
Sbjct: 433 DTQVLLT---GQIPRL----LCQQHDYPEPIVEHRVRQREFKRLYKLVKD 475
>gi|424813932|ref|ZP_18239110.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
gi|339757548|gb|EGQ42805.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
Length = 471
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 259/442 (58%), Gaps = 22/442 (4%)
Query: 27 RIEFIFKSIIELSINLQNYDS-DLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
R++F S+ EL +L D L++R ++EI+++V + DAV N DY P + R
Sbjct: 49 RVKFWHDSLKELEQDLSETDGKQLVVRNGDPAEEIQRVVEETEADAVYHNRDYRPYSKKR 108
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
D+ ++ E++V S+KD V+FEK EIL +G PY ++S+Y+KKW K++K Q
Sbjct: 109 DQKVEDEIEV---PVKSFKDIVMFEKEEILTNSGTPYKVYSYYKKKWF---KNDKRRPQK 162
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKI 205
VK Y + S + I S+++LGF K S+ + G + F + I
Sbjct: 163 --VKDYSTPELESVE--------IPSVSELGFEKPEDMSV-WEGGRENGLQRMKQFKQNI 211
Query: 206 KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIW 265
K+Y+ R+Y + TS LS HL+FGT+SIR++ + K +D G TW +L W
Sbjct: 212 KDYDQARDYAWRDSTSKLSPHLKFGTVSIREVFWEAERM--KEDDSDSEGIETWQEELAW 269
Query: 266 RDFYQMILYCYPNVVNKSFKKEY--DNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
RD+Y IL+ YP+ V++ F +Y + W+S A + + W +G TGYP +D+ + QL
Sbjct: 270 RDYYMQILWNYPHEVDEPFMDKYRGNEPDWDSKEDAPQKWNAWVEGKTGYPFVDAGMRQL 329
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G+MHNRLRMV +F K++ + W+ +YF+ D ++AS G QWS S G +Q
Sbjct: 330 KKTGWMHNRLRMVVTNFSCKDLWLEWRNVHDYFSRMFVDAEIASMVGGIQWSYSIGTDAQ 389
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYP 443
P+FR+FNP+ QS+++D G +IRK++P+L + +++IH PWK S + E+ G+ +G +YP
Sbjct: 390 PYFRVFNPMSQSERYDPDGKYIRKWVPELEDVPDEHIHEPWKMSQSQQEQCGVTIGDDYP 449
Query: 444 KPILEHSLSKKNILKRYNFIKN 465
+PI++H +K ++R+ + N
Sbjct: 450 EPIVDHDEKRKESVERFEKLDN 471
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 163/465 (35%), Positives = 247/465 (53%), Gaps = 29/465 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD +ILD G+ E +++F+ + EL N + SDL+ Y +
Sbjct: 49 VLGLFIFDPDILD----DGVTEGSKVDFMLGCLRELQTNYRRLGSDLLFMYGEPITSLCS 104
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +N + N D EP AI RD+ + L+ IG K S+ D + + I + G+PY
Sbjct: 105 LAKAINTSHLFFNQDVEPFAIKRDREATQALQEIGVKVQSFVDIGLIAPDAIATQAGEPY 164
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ + + W K K Q L L L I + SL +L F N
Sbjct: 165 KVYTPFWRNWQSKPKP-----QPLDAPQKLTGLASYENLPVI---PLPSLRELKFI--ND 214
Query: 183 SSLGIKTGASGAKILLNNFIKK--IKNYNINRNYPSINGTSYLSIHLRFGTISIRKL-VK 239
+L ++G S A LL F I Y R++P+ GTS LS HLRFGT+ IR++ K
Sbjct: 215 ITLP-ESGESAALALLEAFCDGNGILRYQTERDFPAHAGTSTLSPHLRFGTVGIRRVWEK 273
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
I D G W +L WR+FYQ +L+ +P + +++ + + W+ D
Sbjct: 274 AIAAQQLVRSDEDLAGITIWQQELAWREFYQHVLFHFPALATGAYRPQMQSFPWDDD--- 330
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ F WC G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF K
Sbjct: 331 PEKFEAWCAGLTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQLGERYFMQK 390
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D DLA+NNG WQWSASSG +P RIFNP Q++K+D +G +I ++LP+L L+
Sbjct: 391 LLDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQARKYDPEGEYILRWLPELQGLTTAE 449
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ S ++ ++ +NYP PI++H++ ++ + Y K
Sbjct: 450 LLS-GNIPPHQCQR------RNYPLPIVDHNIQQQKFKRLYQDCK 487
>gi|406832861|ref|ZP_11092455.1| hypothetical protein SpalD1_14519 [Schlesneria paludicola DSM
18645]
Length = 511
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 152/444 (34%), Positives = 242/444 (54%), Gaps = 27/444 (6%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ +L+ L+ S LIIR A E+ L+ DAV YEP AI RD +
Sbjct: 84 WLHHSLHQLNEQLEELGSRLIIRQGNALTELLSLIDDTGADAVYWTRRYEPAAIQRDSRV 143
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYP-- 147
K EL+ S+ Q++FE +I K G+PY +F+ + K C Q P
Sbjct: 144 KTELRQRNVLAQSFNGQLLFEPWQIETKQGRPYQVFTAFWKT---------CLTQRTPDE 194
Query: 148 VKSYLNNLVHSSKLHKIINNNIISLN-----DLGFCKSNLSSLGIKTGASGAKILLNNFI 202
+ ++ + K N +SL D GF + + G A+ L+ F+
Sbjct: 195 PEPAPSDFLSPRPWPKSAKLNDLSLRPTIAWDTGFAERWVP------GEKAARQELHRFL 248
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ + +Y R+ P+++GTS LS HL FG IS R + + +++H + D T+L
Sbjct: 249 ESPVFDYVTMRDLPALHGTSRLSPHLHFGEISPRTIWHETQRRLRQHSQ-DPTSAETFLK 307
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
++ WR+F +L+ +PN + + E+ N W +DN K W G TGYP++D+ +
Sbjct: 308 EVGWREFAHHLLFHFPNTPREPLRSEFANFPWINDNPRLKA---WQTGQTGYPIVDAGMR 364
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
+L ++G+MHNR+RM+ ASFL+K++ I W+ G +F + L D DLASN WQW+A G
Sbjct: 365 ELWTTGWMHNRVRMIVASFLVKDLLIPWQKGAEWFWDTLVDADLASNTLGWQWTAGCGAD 424
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ PFFRIFNP++QS+KFD +G +IR+++P+L L K+IH+PW AS L AG+ + +
Sbjct: 425 AAPFFRIFNPVLQSQKFDAEGHYIRRWVPELKNLPTKWIHAPWTASQSVLTAAGVTMDQA 484
Query: 442 YPKPILEHSLSKKNILKRYNFIKN 465
YP PI++H ++ L+ + I
Sbjct: 485 YPLPIVDHDEARHCALEAFRRISQ 508
>gi|363582222|ref|ZP_09315032.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium
HQM9]
Length = 433
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 164/459 (35%), Positives = 249/459 (54%), Gaps = 62/459 (13%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD IL L D R+ FI S+ ++ L+ + + I + ++
Sbjct: 31 VLPIFIFDTEILGKLPEN----DARVSFIHDSLADMHSKLKEMNKGISIFHGEPIAIFQE 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ K + V NHDYEP A+ RDK++ + KF +YKDQV FEK+EI+ G PY
Sbjct: 87 IEKKYKVTKVYTNHDYEPYALERDKILTAFFEEKAIKFETYKDQVYFEKDEIVKADGDPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ Y+ KW E K+ + L+ YP + +L +++ S +L DLGF KS
Sbjct: 147 MVYTPYKNKWKEVFKTKE--LKQYPSQDHLKSIIEFSSYESC------NLKDLGFKKSK- 197
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPS-INGTSYLSIHLRFGTISIRKLVKLI 241
IK A L I++Y RN P GTS L HLRFGT+S+R+++K
Sbjct: 198 ----IKVAPYMATPGL------IESYEDTRNIPGNEEGTSKLGPHLRFGTVSVREILK-- 245
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
K + S+LIWR+F+ IL+ +P+ N SFK +YD I W ++ +
Sbjct: 246 --------KAIAEKNEVFWSELIWREFFMQILWHFPHTKNASFKPKYDRIEWRNN---EA 294
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W G TGYP +D+ + +LN++GYMHNR+RM+ SFL K++ I+W+WGE YFA KL
Sbjct: 295 EFEKWKNGETGYPFVDAGMRELNATGYMHNRVRMLVGSFLCKHLLIDWRWGEAYFAEKLL 354
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D++++SN GNWQW A +G + P+FRIFNP Q +KFD Q +I +++ L++L+
Sbjct: 355 DYEMSSNIGNWQWVAGTGVDAAPYFRIFNPTTQIQKFDKQHEYINRWVTDLNELT----- 409
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
YPKP++EH ++++ L+ Y
Sbjct: 410 --------------------YPKPMVEHKMARERCLETY 428
>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
Length = 474
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 162/458 (35%), Positives = 250/458 (54%), Gaps = 29/458 (6%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VF D IL S I R+ ++ + L + Q S L+I ++ ++
Sbjct: 30 QVVGVFCLDPEIL----SGDDIAPVRVAYMLGCLQCLQEDYQRGGSQLLIIQDNPAQGLR 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
KL + L AV N D EP RD+ +++ L +G K ++ DQV+ I + +P
Sbjct: 86 KLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEVGIKVETFWDQVLHSPEAIFTGSKEP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL---NDLGFC 178
Y +++ Y +KWI++ K C + + + ++ + I+L DLGF
Sbjct: 146 YKVYTPYWRKWIQQPKPEPC-------QRLKSTGLTEAQEKAALEAGAIALPTAKDLGFI 198
Query: 179 KSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
S ++ G + A L F + I Y+ RN+P+I+GTS LS LRFG I IR L
Sbjct: 199 WSE--PFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAIDGTSVLSPALRFGAIGIRTL 256
Query: 238 VKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ + I + + TW +L WR+FYQ LY +P + +F++ +D W SD
Sbjct: 257 WQKTQEIIALTRSDEARHHIQTWQQELAWREFYQQALYHFPALAIGAFRQPFDRFPW-SD 315
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
N +++F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 316 N--QEHFQAWCQGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQWGEKYF 373
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
L D DLASNNG WQWS+SSG +P RIFNP Q++K+D + +IR++LP+L L
Sbjct: 374 MQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQTQKYDPEAEYIRQWLPELRNLD 432
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKK 454
++ + K SS + G YP+PI++H+ +K
Sbjct: 433 TAHLVTG-KISSGDRQACG------YPQPIVDHNRQQK 463
>gi|409989683|ref|ZP_11273203.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
gi|409939453|gb|EKN80597.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
Length = 474
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 250/458 (54%), Gaps = 29/458 (6%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VF D IL S I R+ ++ + L + Q S L+I ++ ++
Sbjct: 30 QVVGVFCLDPEIL----SGDDIAPVRVAYMLGCLQCLQEDYQRGGSQLLIIQDNPAQGLR 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
KL + L A+ N D EP RD+ +++ L +G K ++ DQV+ I + +P
Sbjct: 86 KLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEVGIKVETFWDQVLHSPEAIFTGSKEP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL---NDLGFC 178
Y +++ Y +KWI++ K C + + + ++ + I+L DLGF
Sbjct: 146 YKVYTPYWRKWIQQPKPEPC-------QRLKSTGLTEAQEKAALEAGAIALPTAKDLGFI 198
Query: 179 KSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
S ++ G + A L F + I Y+ RN+P+I+GTS LS LRFG I IR L
Sbjct: 199 WSE--PFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAIDGTSVLSPALRFGAIGIRTL 256
Query: 238 VKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ + + + + TW +L WR+FYQ LY +P + +F++ +D W SD
Sbjct: 257 WQKTQEIMALTRSDEARHHIQTWQQELAWREFYQQALYHFPALATGAFRQPFDRFPW-SD 315
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
N +++F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 316 N--QEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYF 373
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
L D DLASNNG WQWS+SSG +P RIFNP Q++K+D + +IR++LP+L L
Sbjct: 374 MQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQTQKYDPEAEYIRQWLPELRNLD 432
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKK 454
++ + K SS + G YP+PI++H+ +K
Sbjct: 433 TAHLVTG-KISSGDRQACG------YPQPIVDHNRQQK 463
>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
Length = 475
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 163/467 (34%), Positives = 258/467 (55%), Gaps = 26/467 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F D +IL+ + + R+ ++ + EL N Q S L+I S+ I
Sbjct: 31 VVGIFCLDPDILE----KDDVAPARVTYLIGCLQELQQNYQQAGSQLLILKGKPSQAIPI 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L AV N D EP A RD+ + L+ G + DQ++ +IL + +PY
Sbjct: 87 LAESLKAQAVFWNLDVEPYAQTRDEQVSNALQEKGIATEKFWDQLLHAPGKILTLSKEPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNL-VHSSKLHKIINNNIISLNDLGFCKSN 181
+++ + + W +++K K +Q+ LN + +K II+ + + DLG+ N
Sbjct: 147 KVYTPFWRNWSQELK--KSPVQALEDVQGLNQQQISLAKEAGIID--LPTAKDLGYLWEN 202
Query: 182 LSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
L + G + AK L F K I NY R+ P+I+GTS LS L+FG I IR + +
Sbjct: 203 --PLMLNPGETAAKERLQEFCKTSINNYQEQRDLPAIDGTSRLSAALKFGAIGIRTVWQA 260
Query: 241 IFKFIKKHYKTDCI--GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ + + ++D + TW +L WR+FYQ +Y +P + + ++KE+ W++D
Sbjct: 261 TLELYE-NSRSDEVRESIQTWQQELAWREFYQHCMYFFPELADGPYRKEFREFPWDND-- 317
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 318 -EDLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQ 376
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
KL D DL++NNG WQWSASSG +P RIFNP QS+K+D G +IR+++P+L L +
Sbjct: 377 KLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKYDPDGEYIRQWIPELKSLDTE 435
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
Y+ + K + +L + G YP+PI++H + +RY +K
Sbjct: 436 YLVTG-KIPTSELRQCG------YPEPIVDHKKRQAEFKQRYKEVKG 475
>gi|334121002|ref|ZP_08495078.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
gi|333455721|gb|EGK84364.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
Length = 504
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/467 (34%), Positives = 256/467 (54%), Gaps = 28/467 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F D+NIL+ + + R+ ++ + +LS + S L+I S I K
Sbjct: 31 VVGIFCLDRNILN----RDDVAPARVTYMIGCLQKLSSRYRELGSQLLIIQDDPSLGIPK 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L I +N AV N D EP A RD + L+ G K ++ DQV+ +EI + T PY
Sbjct: 87 LAIAINAKAVFWNRDVEPYAKQRDLSVSNALQQAGIKVQNFWDQVLHAPDEIRSGTKTPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN------NIISLNDLG 176
+I++ + KKW K K+ +++ P+ +YL + + + + N + + + LG
Sbjct: 147 TIYTPFWKKWNSKPKAQP--VETLPI-TYLELMTGLTTEEQELANEAGAIETVPTASSLG 203
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
F N L I+ G A+ L F + I Y RN P+INGTS LS L+FG I IR
Sbjct: 204 FIWEN--PLVIEPGEDAAQQKLEEFCDRAIYQYQGQRNSPAINGTSQLSAALKFGAIGIR 261
Query: 236 KLVKLIFKFIKK-HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
+ + + H + TW ++ WR+FYQ +Y +P + + ++ + + W+
Sbjct: 262 TVWQATQIVMDTCHSEEAYTSIRTWQQEIAWREFYQHAMYNFPELADGPYRPAFKDFPWD 321
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
+D +K F WC+G TGYP+ID+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE
Sbjct: 322 ND---EKLFQAWCRGKTGYPIIDAAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQWGEK 378
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF KL D DL +NNG WQWSASSG +P RIFNP Q++KFD +G +IR ++P+L +
Sbjct: 379 YFMQKLIDGDLCANNGGWQWSASSGMDPKP-LRIFNPATQAQKFDPEGEYIRHWVPELRR 437
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ K + + + LE+ + +YP PI++H+ ++ + Y
Sbjct: 438 VDTKVLLT---GNISSLERRLL----HYPSPIVDHNEQQRKFRELYT 477
>gi|428306556|ref|YP_007143381.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
gi|428248091|gb|AFZ13871.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
Length = 474
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/464 (34%), Positives = 253/464 (54%), Gaps = 29/464 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D NIL+ + + R+ ++ + L S+L+I + + I K
Sbjct: 31 VVGVFCLDPNILE----RDDVAPARVTYMIGCLESLQQRYAEVGSELLILFNEPTTAIPK 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L LN AV N D EP A RD+ I LK G ++ DQ++ EI + +G+PY
Sbjct: 87 LAESLNAKAVFWNWDVEPYAKERDRTILAALKEKGIATQNFWDQLLHSPEEIRSGSGQPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNL-VHSSKLHKIINNNIISLND---LGFC 178
+I++ + K WI K KS P + N + + ++ ++ L LGF
Sbjct: 147 TIYTPFWKNWISKAKST-------PAPALQNAIRLTDTEKEAARQAGVVELPTASYLGFI 199
Query: 179 KSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+N +L I G + A+ L F + I Y RN+P+++GTS LS L+FG I IR +
Sbjct: 200 WNN--NLVISPGEAAAQAKLATFCDRTIDQYQEQRNFPAVDGTSQLSAALKFGAIGIRTV 257
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
I + ++ TW +L WR+FYQ +Y +P++ ++++ + + W +DN
Sbjct: 258 WDAIATLYQNSPESAQASIQTWQQELAWREFYQHAIYNFPDLAKGAYREAFKDFPW-NDN 316
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
++F WC+G TGYP++D+A+ Q+N+ G+MHNR RM+ ASFL K++ +NW+ GE YF
Sbjct: 317 --SEHFQAWCEGKTGYPIVDAAMRQMNTIGWMHNRCRMIVASFLTKDLLLNWQLGEKYFM 374
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D DL++NNG WQWSASSG +P RIFNP Q++KFD G +IR +LP+LS +
Sbjct: 375 QKLIDGDLSANNGGWQWSASSGMDPKP-VRIFNPASQAQKFDLDGSYIRHWLPELSSVDT 433
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
K + + + LE+A + YP PI++H+ ++ +RY
Sbjct: 434 KLLIT---GNITPLERASL----GYPAPIVDHNQQQREFKQRYQ 470
>gi|428776176|ref|YP_007167963.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
gi|428690455|gb|AFZ43749.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
Length = 477
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/465 (34%), Positives = 249/465 (53%), Gaps = 30/465 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ VF FD +L + RI+++ + EL+ + S+L+ A I K
Sbjct: 31 IVGVFCFDPKLL----QSDQVAPARIKYLLGCLKELAAGYKKAGSELLFLQADPVTAIPK 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L LN AV NHD EP RD+ ++ L+ + DQ++ EIL K PY
Sbjct: 87 LAETLNASAVFWNHDVEPYGRKRDRAVQSALEAKNIPVHTVWDQLLHAPGEILTKGEDPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKS--YLNNLVHS--SKLHKIINNNIISLNDLGFC 178
+++ + K W ++ K+ PV +L L S +K + ++ +LNDLG
Sbjct: 147 KVYTPFWKNWQKQPKAE-------PVGQIRHLTGLTDSEQAKSATVGKISLPTLNDLGLT 199
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
N L + G + A+ L F + I +Y+ NRNYP+I+GTS LS L+FG ISIR++
Sbjct: 200 WDN--DLPLLPGETAARERLEQFCDRAILDYDQNRNYPAIDGTSVLSAALKFGAISIREI 257
Query: 238 VKLIFKFIKKHYKTDCIGYFT-WLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ + + T W +L WR+FYQ LY +P + + + ++ + W+++
Sbjct: 258 WQTTVTLWEDTRSDEARDNITAWRQELAWREFYQHALYFFPELADGPDRDQFKDFPWDNN 317
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
+F WC G TGYP++D+A+ QLN++G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 318 ---PDHFQAWCDGKTGYPIVDAAMRQLNTTGWMHNRCRMIVASFLTKDLIINWQWGEKYF 374
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
L D DLA+NNG WQWSASSG +P RIFNP Q++KFD G +IR +LP+L+ L
Sbjct: 375 MQTLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPDGEYIRYWLPELNALD 433
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ + + LE+ + Y +PI++H ++ +RY
Sbjct: 434 TGDLLT---GNISPLERENL----GYVQPIVDHKQQQRAFKQRYQ 471
>gi|153835921|ref|ZP_01988588.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
gi|149750675|gb|EDM61420.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
Length = 471
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 155/456 (33%), Positives = 253/456 (55%), Gaps = 32/456 (7%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+E + + + EL+I L + + R+ +K I KLN AVM
Sbjct: 44 MAPMQADLIA--RRLEHVHQELTELNIPLLYKE---VPRFDDCTKVICDWADKLNATAVM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
+N +YE + D+ + + L G +F ++ D+ + +LNK G+ + +F+ +++ W+
Sbjct: 99 VNINYEVNEVELDRKVSQALDNRGVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWL 158
Query: 134 EKVKSNKCYLQSYPV--KSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGA 191
+K S P K N + S +L + + + D F SS
Sbjct: 159 QKF--------SLPTVSKPQKQNELPSEQLAAVKQDGFDA--DFTFSYPRESSEAWCAST 208
Query: 192 SGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYK 250
+ L F ++ + Y + R++P+I+GTS LS +L G +S R+ + ++ +
Sbjct: 209 NDILKQLRTFARERSDGYQMKRDFPAIDGTSQLSPYLAIGALSPRQCIARLYAENPQPDL 268
Query: 251 TDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKG 309
++ G TWLS++IWR+FYQ +L P +V + F D I W +Y ++ F W G
Sbjct: 269 SE--GKATWLSEIIWREFYQHLLVFEPKLVKGRGFIDWEDKIQW---SYDEQAFECWKTG 323
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D A+NN
Sbjct: 324 TTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGEEYFMSKLVDGDFAANN 383
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSY 429
G WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ + NK+IH PW +
Sbjct: 384 GGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFVRHWVPEIKSVPNKFIHKPWTWEGF 443
Query: 430 KLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
L Y KP+++H + ++ L+ + K
Sbjct: 444 SL--------LEYHKPMVDHKVEREITLRLFKSAKE 471
>gi|317052654|ref|YP_004113770.1| deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
gi|316947738|gb|ADU67214.1| Deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
Length = 469
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 144/441 (32%), Positives = 243/441 (55%), Gaps = 31/441 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLII----RYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
R +F+ +++ L + LQ L + +A + + KL + N +Y
Sbjct: 48 RRDFLLRNLECLRLQLQAVGIPLFVLDCHDFAAVPEALLKLARTTGARRLFFNEEYAIDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD +++ + G + D V+ ++ + G+ Y +F+ +QK W++ V N
Sbjct: 108 WRRDMAVERCFRENGMEVRRCCDHVVVPAGQLRSGRGECYRVFTPFQKAWLKLVVENPAL 167
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L P+ + ++ H + D+ ++L G + A+ L F+
Sbjct: 168 LAPAPIVN--------TQPHPFPGDGAALPTDIPHPLAHL----WPAGEAEAQRRLQAFL 215
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
I+ Y+++R++P+I GTS LS +L G +SIR+ V + + G WLS
Sbjct: 216 DGPIRRYHLDRDFPAIEGTSALSPYLACGVLSIRQCVSAALELANGGSE----GARVWLS 271
Query: 262 QLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+LIWR+F+Q IL +P V N++F++ + + W Y + F WC+G TGYP++D+A+
Sbjct: 272 ELIWREFFQHILRAFPRVSTNRAFQEHTETVAW---RYDEGEFAAWCEGRTGYPIVDAAM 328
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL+S+G+MHNRLRM+ A FL K++ I+W+WGE YF L D DLA+NNG WQW+AS+G
Sbjct: 329 AQLHSTGWMHNRLRMICAMFLTKDLLIDWRWGERYFMEHLVDGDLAANNGGWQWAASTGT 388
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
+ P+FR+F+P QSK+FD G FIR +LPQL++L KYIH P +S L + I
Sbjct: 389 DAVPYFRVFHPTTQSKRFDPHGQFIRHFLPQLAELDEKYIHEPHDSSG--LLRPNI---- 442
Query: 441 NYPKPILEHSLSKKNILKRYN 461
+YP+P+++H ++++ + ++
Sbjct: 443 DYPRPMVDHKVARQRAIDAFS 463
>gi|443646532|ref|ZP_21129464.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335725|gb|ELS50187.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
Length = 474
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 257/460 (55%), Gaps = 29/460 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ I R+ ++ + EL N + S L+I S+ + L
Sbjct: 34 VFCLDPAILE----GDDIAPARVAYLLGCLEELEKNYRQKGSQLLIIRGKPSQTLVNLAG 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEVETFWDQLLQAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K+ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKARPTTLEN--LQGLDKN--EGEKLTETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A L F + I NY +RN+P+++GTS LS L+FGTI IR + +
Sbjct: 202 PLTPGEKAANSTLEEFCQGVINNYQEDRNFPAVDGTSRLSAALKFGTIGIRTIWTATLEL 261
Query: 245 I---KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + D I TW +L WR+FYQ LY +P + +++KE+ + W+ DN ++
Sbjct: 262 LENCRAQEAKDSI--ITWQQELAWREFYQHCLYFFPELAVGAYRKEFRHFPWQ-DN--EE 316
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL
Sbjct: 317 HFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLF 376
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+
Sbjct: 377 DGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEYIRQWLPELASVDTEYLV 435
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ K + + G YP+PI++H+ +K + Y+
Sbjct: 436 TG-KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|399543907|ref|YP_006557215.1| deoxyribodipyrimidine photo-lyase [Marinobacter sp. BSs20148]
gi|399159239|gb|AFP29802.1| Deoxyribodipyrimidine photo-lyase [Marinobacter sp. BSs20148]
Length = 488
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 147/405 (36%), Positives = 234/405 (57%), Gaps = 24/405 (5%)
Query: 69 IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFY 128
I V N +Y RDK +K +G K Y+DQ E+L + +PYS+F+ +
Sbjct: 100 ISQVHFNEEYGVNERRRDKALKPRFDTLGVKVSKYRDQAAVPVGEVLTQQSEPYSVFTPF 159
Query: 129 QKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK 188
++W + + L + P K + + + + +N++I ++ +
Sbjct: 160 SRRWRSWQEEQQPALLAVPKK--MGEALAGADVKN--SNSVILKKEVDAIFGEAPPALVT 215
Query: 189 TGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF--- 244
TG + L NF++ ++ +Y +R++P+I GTS LS +L G +S R+ V+ ++
Sbjct: 216 TGENAGHDALQNFLQERVGDYKKDRDFPAIKGTSKLSPYLAIGALSGRQCVQAAWQLKQS 275
Query: 245 IKKHYKTDC---IGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAK 300
+ + T G+FTW+++L WRDFY ILY P V ++++FK E + + W N A
Sbjct: 276 MGGSFGTATNNEEGFFTWVTELAWRDFYIHILYHCPRVSMHRAFKPETEALHW---NTAD 332
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
++F W G TG P++D+A+ QLN++G+MHNRLRMV A FL KN+ I+W+ GE YF +KL
Sbjct: 333 EHFEAWKNGRTGIPMVDAAMRQLNATGWMHNRLRMVAAMFLTKNLFIDWRRGEAYFMSKL 392
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D LASNNG WQWSAS+G S P+FR+FNP+ Q ++FD G FIR ++P+L+KL +K I
Sbjct: 393 ADGYLASNNGGWQWSASTGTDSSPYFRVFNPMTQGERFDTDGEFIRHWVPELAKLDSKRI 452
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
H+P K G+I G YPKPI++ S+K + R+ +++
Sbjct: 453 HNP--------GKGGVIPG-GYPKPIVDLKESRKEAIARFQALRD 488
>gi|260901113|ref|ZP_05909508.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
gi|308109383|gb|EFO46923.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
Length = 471
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 253/456 (55%), Gaps = 32/456 (7%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR++ + + + EL+I L + + R+ +K I KLN A M
Sbjct: 44 MAPMQADLIA--RRLQHVHQELTELNIPLLCKE---VPRFDDCTKVICDWADKLNATAAM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
+N +YE + D+ + + L G +F ++ D+ + +LNK G+ + +F+ +++ W+
Sbjct: 99 VNINYEVNEVELDRKVSQALDNRGVEFHAFHDKCVLAPTTVLNKQGEYFKVFTPFKRAWL 158
Query: 134 EKVKSNKCYLQSYPV--KSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGA 191
+K S P K N + S +L + + + D F SS
Sbjct: 159 QKF--------SLPTVSKPQRQNELPSEQLEAVKQDGFDA--DYTFSYPRESSEAWCAST 208
Query: 192 SGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYK 250
+ L F ++ + Y + R++P+I+GTS LS +L G +S R+ + ++ +
Sbjct: 209 NDILKQLRTFARERSDGYQMKRDFPAIDGTSQLSPYLAIGALSPRQCIARLYAENPQPDL 268
Query: 251 TDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKG 309
++ G TWLS++IWR+FYQ +L P +V + F D I W +Y ++ F W G
Sbjct: 269 SE--GKATWLSEIIWREFYQHLLVFEPKLVKGRGFIDWEDKIQW---SYDEQAFECWKTG 323
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D A+NN
Sbjct: 324 TTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGEEYFMSKLVDGDFAANN 383
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSY 429
G WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ ++ NK++H PW +
Sbjct: 384 GGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFVRHWVPEIKRVPNKFVHKPWTWEGF 443
Query: 430 KLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
L Y KP+++H + ++ L+ + K
Sbjct: 444 SL--------LEYHKPMVDHKVEREITLRLFKSAKE 471
>gi|428770667|ref|YP_007162457.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
gi|428684946|gb|AFZ54413.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
Length = 473
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 171/475 (36%), Positives = 260/475 (54%), Gaps = 41/475 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D NIL+ + I R++++ + L Q SDL+I + + I
Sbjct: 28 VIGVFCLDPNILN----RDDIAPARVKYLLGCLEALKTKYQKLGSDLLIFHNTPEEIIPS 83
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK-P 121
L KL DAV N D EP + RDK + + LK + ++ DQ++ EIL+K+ +
Sbjct: 84 LAEKLKADAVYWNLDVEPFSRHRDKNVSQALKEKSIETQTFWDQLLHSPGEILSKSNQTA 143
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y++++ + + W + KS+ + S + LN+L + + ++ NI SLNDLGF
Sbjct: 144 YTVYTPFWRNWEAQPKSSP--VDSPQQLTGLNDL-EKTIVKELGTINIPSLNDLGFPWD- 199
Query: 182 LSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ L + G A L F + I NY +RNYP ++GTS LS L+FG IS+R + K
Sbjct: 200 -ADLPLSPGEESALERLEYFCQSLIYNYECDRNYPFLDGTSQLSAALKFGAISVRTIWKK 258
Query: 241 IFKFIKKHYKTDC------IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
+ T+C W ++ WR+FYQ LY +P + ++++++ WE
Sbjct: 259 -----SQAELTNCNSDEARENIIAWQKEIAWREFYQHCLYFFPQLAEGAYREQFKQFPWE 313
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
+D +K F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ I+W+WGE
Sbjct: 314 ND---EKKFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEK 370
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF KL D DLA+NNG WQWSASSG +P RIFNP Q++KFD + +IR +LP++
Sbjct: 371 YFMQKLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPEAEYIRTWLPEIRH 429
Query: 415 LSNKYIH----SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
L K + SP +ASS YP PI++HS ++ + Y +K
Sbjct: 430 LDTKDLVTGKISPLEASSC-----------GYPLPIVDHSQQQREFKRLYQLVKG 473
>gi|433660514|ref|YP_007301373.1| Deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus BB22OP]
gi|432511901|gb|AGB12718.1| Deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus BB22OP]
Length = 471
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/456 (33%), Positives = 252/456 (55%), Gaps = 32/456 (7%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+E + + + EL+I L + + R+ +K I KLN A M
Sbjct: 44 MAPMQADLIA--RRLEHVHQELTELNIPLLYKE---VPRFDDCTKVICDWADKLNATAAM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
+N +YE + D+ + + L G +F ++ D+ + ILNK G+ + +F+ +++ W+
Sbjct: 99 VNINYEVNEVELDRKVSQALDNRGVEFHAFHDKCVHAPTTILNKQGEYFKVFTPFKRAWL 158
Query: 134 EKVKSNKCYLQSYPV--KSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGA 191
+K S P K N + S +L + + + D F SS
Sbjct: 159 QKF--------SLPTVSKPQKQNELPSEQLAAVKQDGFDA--DFTFSYPRESSEAWCAST 208
Query: 192 SGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYK 250
+ L F ++ + Y + R++P+I+GTS LS +L G +S R+ + ++ +
Sbjct: 209 NDILKQLRTFARERSDGYQMKRDFPAIDGTSQLSPYLAIGALSPRQCIARLYAENPQPDL 268
Query: 251 TDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKG 309
++ G TWLS++IWR+FYQ +L P +V + F D I W +Y ++ F W G
Sbjct: 269 SE--GKATWLSEIIWREFYQHLLVFEPKLVKGRGFIDWEDKIQW---SYDEQAFECWKTG 323
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D A+NN
Sbjct: 324 TTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGEEYFMSKLVDGDFAANN 383
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSY 429
G WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ + NK++H PW +
Sbjct: 384 GGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFVRHWVPEIKSVPNKFVHKPWTWEGF 443
Query: 430 KLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
L Y KP+++H + ++ L+ + K
Sbjct: 444 SL--------LEYHKPMVDHKVEREITLRLFKSAKE 471
>gi|225010806|ref|ZP_03701274.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-3C]
gi|225005014|gb|EEG42968.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-3C]
Length = 438
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/468 (36%), Positives = 246/468 (52%), Gaps = 76/468 (16%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD ILD L + D R++FI + E++ + + Y + + K
Sbjct: 32 VLPIFIFDTEILDMLPEK----DPRLQFIVNQLHEINQHFNTQFQSGVQSYHNSPLNVFK 87
Query: 63 LVIKLNID----AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
+++ D V N DYEP A+ RD IK L F S+KDQV+FEK+++ +
Sbjct: 88 SLLEAANDFKVCGVYTNEDYEPYAVQRDLEIKAYLATKSVDFHSFKDQVVFEKDQVTKED 147
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYP-----VKSYLNNLVHSSKLHKIINNNIISLN 173
GKPY +++ Y+ KW+ + Q YP + L NL +N ++ +
Sbjct: 148 GKPYVVYTPYKNKWL------SIFEQQYPNGFQEIDMPLENLYK-------MNTSLHDMK 194
Query: 174 DLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSI-NGTSYLSIHLRFGTI 232
LGF SS I+ L I+ Y RN+PSI NGTS L HLRFGT+
Sbjct: 195 ALGF-----SSAEIEVPKYSVTSAL------IEAYEAKRNFPSIENGTSKLGPHLRFGTV 243
Query: 233 SIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNIL 292
SIR LV+ K +LS+LIWR+F+ IL+ +P+ +FK YD I
Sbjct: 244 SIRALVQ----------KAKGQKNQVFLSELIWREFFMQILWHFPHTPTNAFKPAYDRIE 293
Query: 293 WESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWG 352
W ++ F +W G TGYPL+D+ + +LN++G MHNR+RM+ ASFL K++ I+W+WG
Sbjct: 294 WRNN---AAEFEHWKNGTTGYPLVDAGMRELNATGTMHNRVRMLVASFLCKHLLIDWRWG 350
Query: 353 ENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQL 412
E YFA KL DF+LASN GNWQW+A SG + P+FRIFNP Q KFD Q I+++K++ L
Sbjct: 351 EAYFAEKLLDFELASNVGNWQWAAGSGVDAAPYFRIFNPTTQIDKFDKQHIYLKKWVSDL 410
Query: 413 SKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+L+ YP PI++H ++++ L Y
Sbjct: 411 GELT-------------------------YPSPIVDHKMARERCLATY 433
>gi|448734695|ref|ZP_21716917.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
gi|445799763|gb|EMA50133.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
Length = 466
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/467 (31%), Positives = 250/467 (53%), Gaps = 33/467 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD ++L+ R+ F+ ++ L + DSDL+I ++E+
Sbjct: 27 VLPVFVFDPSVLEHAAPP------RMAFLRDALAWLREWYRERDSDLVIARGDPAEELPN 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + V+ NHDY A RD ++ L G + ++ D V E I G PY
Sbjct: 81 LAEEHGANGVVWNHDYTGLAQERDGAVRAALDEAGVEHETFHDAVHHEPGTITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--S 180
++FS++ KW+++ K + PV + + L ++ + + L+DLGF + +
Sbjct: 141 AVFSYFGDKWLDREKDD-------PVPA-----PDADALADVVGDELPKLDDLGFEEPDA 188
Query: 181 NLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
NL S G TGA A+ L+ F + I Y+ R YP+ +GTS LS L++GTI IR++V+
Sbjct: 189 NLPSAG--TGA--ARERLDRFCESPIFEYDEEREYPARSGTSRLSQDLKYGTIGIREVVE 244
Query: 240 LIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ + + T+ +L WR+FY + Y PNVV++++K + I W DN
Sbjct: 245 RTAEALDEAESEAEHEAVETYREELAWREFYTQVTYYNPNVVSQNYKDFTNEIEWREDN- 303
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
++ W G TGYP++D+ + QL + YMHNR+RM+ ASFL K++ ++W+ G ++F
Sbjct: 304 --EDLAAWKAGETGYPIVDAGMRQLRAEAYMHNRVRMIVASFLTKDLRLDWRAGYDHFRE 361
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
+L D D A++NG WQW+AS+G +QP+FR+FNP+ Q +++D +I ++P+L + +
Sbjct: 362 RLVDHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGERYDPDAEYITTHVPELDGVDPE 421
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IHS + + E L YP PI +H ++ + + +
Sbjct: 422 AIHSWHELDDEERED----LAPEYPAPICDHGERREEAIAMFERARG 464
>gi|417323068|ref|ZP_12109598.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
gi|328469264|gb|EGF40210.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
Length = 471
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 253/456 (55%), Gaps = 32/456 (7%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+E + + + EL+I L + + R+ +K I KLN A M
Sbjct: 44 MAPMQADLIA--RRLEHVHQELTELNIPLLYKE---VPRFDDCTKVICDWADKLNATAAM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
+N +YE + D+ + + L G +F ++ D+ + +LNK G+ + +F+ +++ W+
Sbjct: 99 VNINYEVNEVELDRKVSQALDNRGVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWL 158
Query: 134 EKVKSNKCYLQSYPV--KSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGA 191
+K S P K N + S++L + + + D F SS
Sbjct: 159 QKF--------SLPTVSKPQRQNELPSAQLAAVKQDAFDA--DFTFSYPRESSKAWCAST 208
Query: 192 SGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYK 250
+ L F ++ + Y + R++P+I+GTS LS +L G +S R+ + ++ +
Sbjct: 209 NDILKQLRTFARERSDGYQMKRDFPAIDGTSQLSPYLAIGALSPRQCIARLYAENPQPDL 268
Query: 251 TDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKG 309
++ G TWLS++IWR+FYQ +L P +V + F D I W +Y ++ F W G
Sbjct: 269 SE--GKATWLSEIIWREFYQHLLVFEPKLVKGRGFIDWEDKIQW---SYDEQAFECWKTG 323
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D A+NN
Sbjct: 324 STGYPIVDAAMRQLNQTGWMHNRLRMIVASFLAKDLHIDWRWGEEYFMSKLVDGDFAANN 383
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSY 429
G WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ + NK++H PW +
Sbjct: 384 GGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFVRHWVPEIKSVPNKFVHKPWTWEGF 443
Query: 430 KLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
L Y KP+++H + ++ L+ + K
Sbjct: 444 SL--------LEYHKPMVDHKVEREITLRLFKSAKE 471
>gi|422303261|ref|ZP_16390615.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
gi|389791796|emb|CCI12426.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
Length = 474
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 159/458 (34%), Positives = 256/458 (55%), Gaps = 25/458 (5%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ + I R+ ++ + EL N + S L+I S+ + L
Sbjct: 34 VFCLDPAILE----RDDIAPARVAYLLGCLEELEKNYRQKGSQLLIICGNPSQTLVNLAG 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEVETFWDQLLHAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K++ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKASPTTLEN--LQGLDEN--EGDKLTETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A L F + I NY +RN+P+ +GTS LS L+FG I IR + +
Sbjct: 202 PLTPGEKAAHSRLEEFCQGVINNYQEDRNFPAFDGTSRLSAALKFGAIGIRTIWTATLEL 261
Query: 245 IKKHYKTDCI-GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNF 303
++ + TW +L WR+FYQ LY +P + +++KE+ + W+ DN +++F
Sbjct: 262 LENCRAEEAKNSIITWQQELAWREFYQHCLYFFPELAEGAYRKEFRHFPWQ-DN--EEHF 318
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL D
Sbjct: 319 QAWCQGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDG 378
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+ +
Sbjct: 379 DLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEYIRQWLPELASVDTEYLVTG 437
Query: 424 WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
K + + G YP+PI++H+ +K + Y+
Sbjct: 438 -KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|425443748|ref|ZP_18823817.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
gi|389735029|emb|CCI01399.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
Length = 474
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 161/460 (35%), Positives = 256/460 (55%), Gaps = 29/460 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ I R+ ++ + EL N + S L+I S+ + L
Sbjct: 34 VFCLDPAILE----GDDIAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAG 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEVETFWDQLLHAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K++ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKASPTTLET--LQGLDEN--EGEKLTETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A L F + I NY +RN+P+ +GTS LS L+FG I IR + +
Sbjct: 202 PLTPGEKAASSRLEEFCQGVINNYQEDRNFPAFDGTSRLSAALKFGAIGIRTIWTATLEL 261
Query: 245 I---KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + D I TW +L WR+FYQ LY +P + +++KE+ + W+ DN ++
Sbjct: 262 LENCRAQEAKDSI--ITWQQELAWREFYQHCLYFFPELAVGAYRKEFRHFPWQ-DN--EE 316
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL
Sbjct: 317 HFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLF 376
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+
Sbjct: 377 DGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEYIRQWLPELASVDTEYLV 435
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ K + + G YP+PI++H+ +K + Y+
Sbjct: 436 TG-KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|238028072|ref|YP_002912303.1| deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
Length = 489
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/467 (31%), Positives = 240/467 (51%), Gaps = 23/467 (4%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CV++F+++ PL G + ++ ++ L L L++ + I L
Sbjct: 40 CVYVFERDGTRPL--GGAVR----WWLDGALRSLDAKLAAQGGGLVVLEGDERETIAALA 93
Query: 65 IKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSI 124
+L AV N Y+ A D +K+ LK G + S+ ++ E EI +G + +
Sbjct: 94 GELGAGAVYWNRRYDGLARETDAALKRSLKEAGIEVESFNGALLHEPWEIRTGSGGAFQV 153
Query: 125 FSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSS 184
F+ Y + + + P K + +L + + ++ LG
Sbjct: 154 FTAYWR--AARAAGELPAPLAEPAKWRFH------RLPEALARRATRIDALGLLPVRPDW 205
Query: 185 LG-----IKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
G + G L F+ K+I+ Y R+ P TS LS +LRFG +S R++
Sbjct: 206 AGGLREAWEPSEEGGLARLEAFLDKQIRGYGDARDRPDRPATSRLSPYLRFGQLSARQVW 265
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
++ +LS+L WR+F +LY +P + ++++ +D + W SD
Sbjct: 266 HAAQAAGREGGAAVAADIEKFLSELGWREFNTSLLYHFPELPMRNYRDRFDAMPWRSDEA 325
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
A F WC+G TGYPL+D+ + +L ++G+MHNR+RMVTASFLIK++ I+W+ GE +F +
Sbjct: 326 A---FAAWCRGRTGYPLVDAGMRELWATGWMHNRVRMVTASFLIKHLLIDWRAGERWFWD 382
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D D+A+N+ NWQW A SG + P+FRIFNP++Q +KFD G ++R+++P+L+ L
Sbjct: 383 TLVDADIANNSANWQWVAGSGADAAPYFRIFNPVMQGRKFDPDGAYVRRWVPELAGLPAD 442
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH PW+A LE AG++LG+ YP PI++H ++K L K
Sbjct: 443 AIHEPWRAKPVVLEAAGVVLGRTYPAPIVDHDAARKRALGALEATKR 489
>gi|28901326|ref|NP_800981.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|260362883|ref|ZP_05775752.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
gi|260880171|ref|ZP_05892526.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
gi|260895288|ref|ZP_05903784.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
Peru-466]
gi|28809873|dbj|BAC62814.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|308085662|gb|EFO35357.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
Peru-466]
gi|308091875|gb|EFO41570.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
gi|308112450|gb|EFO49990.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
Length = 471
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 253/456 (55%), Gaps = 32/456 (7%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+E + + + EL+I L + + R+ ++ I KLN A M
Sbjct: 44 MAPMQADLIA--RRLEHVHQELTELNIPLLYKE---VPRFDDCTQVICDWADKLNATAAM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
+N +YE + D+ + + L G +F ++ D+ + +LNK G+ + +F+ +++ W+
Sbjct: 99 VNINYEVNEVELDRKVSQALDNRGVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWL 158
Query: 134 EKVKSNKCYLQSYPV--KSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGA 191
+K S P K N + S++L + + + D F SS
Sbjct: 159 QKF--------SLPTVSKPQRQNELPSAQLAAVKQDGFDA--DFTFSYPRESSEAWCVST 208
Query: 192 SGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYK 250
+ L F ++ + Y + R++P+I+GTS LS +L G +S R+ + ++ +
Sbjct: 209 NDILKQLRTFARERSDGYQMKRDFPAIDGTSQLSPYLAIGALSPRQCIARLYAENPQPDL 268
Query: 251 TDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKG 309
++ G TWLS++IWR+FYQ +L P +V + F D I W +Y ++ F W G
Sbjct: 269 SE--GKATWLSEIIWREFYQHLLVFEPKLVKGRGFIDWEDKIQW---SYDEQAFECWKTG 323
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D A+NN
Sbjct: 324 TTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGEEYFMSKLVDGDFAANN 383
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSY 429
G WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ + NK++H PW +
Sbjct: 384 GGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFVRHWVPEIKSVPNKFVHKPWTWEGF 443
Query: 430 KLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
L Y KP+++H + ++ L+ + K
Sbjct: 444 SL--------LEYHKPMVDHKVEREITLRLFKSAKE 471
>gi|425456019|ref|ZP_18835730.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
gi|389802953|emb|CCI18036.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
Length = 474
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 161/460 (35%), Positives = 257/460 (55%), Gaps = 29/460 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ I R+ ++ + EL N + S L+I S+ + L
Sbjct: 34 VFCLDPAILE----GDDIAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAG 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEVETFWDQLLHAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K++ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKASPTTLEN--LQGLDEN--EGEKLTETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A L F + I NY +RN+P+++GTS LS L+FG I IR + +
Sbjct: 202 PLTPGEKAANSRLEEFCQGVINNYQEDRNFPAVDGTSRLSAALKFGAIGIRTIWTATLEL 261
Query: 245 I---KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + D I TW +L WR+FYQ LY +P + +++KE+ + W+ DN ++
Sbjct: 262 LENCRAQEAKDSI--ITWQQELAWREFYQHCLYFFPELAVGAYRKEFRHFPWQ-DN--EE 316
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL
Sbjct: 317 HFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLF 376
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+
Sbjct: 377 DGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEYIRQWLPELASVDTEYLV 435
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ K + + G YP+PI++H+ +K + Y+
Sbjct: 436 TG-KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|197336881|ref|YP_002158424.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
gi|197314133|gb|ACH63582.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
Length = 464
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 163/445 (36%), Positives = 249/445 (55%), Gaps = 28/445 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLII----RYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+ I + ++EL L+ + LI+ ++ +I L +L+++A+ N +YE
Sbjct: 39 QIDLIKRRLVELKNELEQLNIPLIVISSPLFSEIPAKITALFSELSVNALFANKEYEHDE 98
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+RD + + L C FF K I I+N+T +PY +F+ ++K W K++
Sbjct: 99 RLRDTQVYESLLNTNCSFFDAK--CILPVGTIINRTQQPYKVFTPFKKAW----KASFYQ 152
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
Q + K+ + L + K+ NN S F SN S + + IL
Sbjct: 153 QQPHITKTERSVLCDPKLIEKLSLNNDDSFT---FLSSNESGSWTVSTKAIIDILRQFCR 209
Query: 203 KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
+K+ Y+ NR+YP I GTS LS +L G IS ++ + ++ +Y+ + G WL +
Sbjct: 210 QKVSQYHNNRDYPEIQGTSQLSPYLAIGAISAKQCALRLH--LEANYELN-QGEDIWLDE 266
Query: 263 LIWRDFYQMILYCYPNVVNKSFKKEYDN-ILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
LIWR+FY +L+ YPN+ YD I W+++ NF WCKG TG+P++D+A+
Sbjct: 267 LIWREFYTHLLHFYPNLSKNQAFLSYDKYIEWDNN---LDNFERWCKGETGFPIVDAAMK 323
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
QLN++G+MHNRLRM+TASFL+K++ I+W+WGE YF +KL D D ASNNG WQW AS GC
Sbjct: 324 QLNTTGWMHNRLRMITASFLVKDLHIDWRWGEQYFMSKLIDGDFASNNGGWQWCASVGCD 383
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
S P+FRIFNPI Q KKFD FI+ +LP+L LSNK IH P A ++ N
Sbjct: 384 SSPYFRIFNPITQGKKFDADCTFIKHWLPELKALSNKEIHHP--------NPAPLLKSDN 435
Query: 442 YPKPILEHSLSKKNILKRYNFIKNI 466
YP I++H+ + +++ Y K +
Sbjct: 436 YPDQIVDHAQQRIKVIEVYKQAKQL 460
>gi|218246283|ref|YP_002371654.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
Length = 481
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 169/479 (35%), Positives = 258/479 (53%), Gaps = 40/479 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F FD NIL+ Q I RI ++ + EL Q S+L+ S I +
Sbjct: 31 VVGIFCFDSNILE----QNDIAPVRIAYLIGCLQELQQTYQKLGSNLLFIQGEPSHIIPQ 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L+ +AV N D EP + RD+ + + LK G K +Y DQ++ EI+ K+G+PY
Sbjct: 87 LAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQGIKTQTYWDQLLHYPGEIVTKSGEPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNL-----VHSSKLHKIINNNIISL---ND 174
+++ + K W + K S NNL + ++L + N NII L +
Sbjct: 147 KVYTPFWKNWELQSKD-----------SITNNLESLEGLTQTELQQAKNVNIIDLPTVQE 195
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTIS 233
LG+ L + G + A L+ F I Y RN+P+I GTS LS L+FG I
Sbjct: 196 LGYRWD--YPLILSPGETAAAERLDYFCDAAINEYQEQRNFPAIEGTSQLSPALKFGVIG 253
Query: 234 IRKLVKLIFKFIKKHYKTDCI--GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNI 291
IR + + K ++ + ++D + TW +L WR+FYQ LY +P + +++++ +
Sbjct: 254 IRTVWQATLKAME-NSRSDEVRESIVTWQKELAWREFYQHCLYFFPELAEGPYREDFQDF 312
Query: 292 LWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKW 351
W+++ F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+W
Sbjct: 313 PWDNNEVL---FQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLMINWQW 369
Query: 352 GENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQ 411
GE YF L D DLA+NNG WQWSASSG +P RIFNP Q++KFD +IR++LP+
Sbjct: 370 GEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPDADYIRQWLPE 428
Query: 412 LSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
L L + + + K S G YP+PI+ H+ ++ +RY+ +K + N
Sbjct: 429 LRSLDTEVLVTG-KISPLDCLSCG------YPQPIVNHNQQQREFKRRYSQVKQTKSVN 480
>gi|448729676|ref|ZP_21711991.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
gi|445794978|gb|EMA45516.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
Length = 466
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/465 (30%), Positives = 243/465 (52%), Gaps = 29/465 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD ++L+ R+ F+ ++++ L + DSDLI+ ++E+ +
Sbjct: 27 VLPVFVFDPDVLEHAAPP------RVAFLHEALVWLREWYRERDSDLIVVQGDPAEELPQ 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
LV + D V+ NHDY A RD+ ++ L G Y D V E I G PY
Sbjct: 81 LVDEHGADGVVWNHDYTGLAQERDEAVRAALDEAGVDHEQYHDAVHHEPGTITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++FS++ KW+++ K++ PV + + L + + + +L+DLGF + +
Sbjct: 141 AVFSYFGDKWLDREKAD-------PVPA-----PDTDALADVEGDELPALDDLGFEEPDA 188
Query: 183 SSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ G A+ L+ F + I Y+ R YP+ GTS LS L++GTI IR++ +
Sbjct: 189 TL--PPAGTEAARERLDRFCESPIFEYDEEREYPARGGTSRLSQDLKYGTIGIREVTERT 246
Query: 242 FKFIKKHYKTDC-IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ D T+ +L WR+FY + Y PNVV +++K + I W D
Sbjct: 247 AAALDDAENEDERESVETYREELAWREFYTQVTYYNPNVVTRNYKDYENQIEWRED---A 303
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
++ W G TGYP++D+ + QL YMHNR+RM+ ASFL K++ ++W+ G ++F +L
Sbjct: 304 EDLAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLLDWRAGYDHFRERL 363
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D +I ++P+L ++ I
Sbjct: 364 VDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYITTHIPELDGVNPDDI 423
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
HS W + + L YP PI +H ++ + + +
Sbjct: 424 HS-WHELDEEERE---ELAPEYPAPICDHGERREEAIAMFERARG 464
>gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
Length = 487
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 140/467 (29%), Positives = 243/467 (52%), Gaps = 23/467 (4%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CV++ ++ PL ++ ++ L +L + L++ + I L
Sbjct: 38 CVYVLEREGTRPLGGAARW------WLDGALRSLDASLAGHGGRLLVLEGDERETIAALA 91
Query: 65 IKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSI 124
+L+ AV N Y+ A D +K+ LK G + S+ ++ E E+ +G + +
Sbjct: 92 EELDAGAVYWNRRYDGIARETDGALKRSLKEAGIEAESFNGALLREPWELQTGSGGAFQV 151
Query: 125 FSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSS 184
F+ Y W +KS S P+ H+ L + + ++ LG +
Sbjct: 152 FTAY---WRAALKSGDV---SAPLAEPSTWRFHT--LPASLARRALKIDALGLLPTRPDW 203
Query: 185 LG------IKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
G + T + ++L KKI+ Y R+ P TS LS +LRFG +S R++
Sbjct: 204 AGGLREAWVPTEEAALELLERFLDKKIRGYGEARDRPDRPATSRLSPYLRFGQLSARQVW 263
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
++ ++S+L WR+F +LY +P + +++++ +D + W D
Sbjct: 264 HAAMAAAREGGAAVAADIEKFVSELGWREFDTSLLYHFPELPTRNYRERFDAMPWRDD-- 321
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ F WC+G TGYPL+D+ + +L ++G+MHNR+RMV ASFLIK++ I+W+ GE +F +
Sbjct: 322 -EAGFTAWCRGRTGYPLVDAGMRELWTTGWMHNRVRMVVASFLIKHLLIDWRAGERWFWD 380
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D D+A+N+ NWQW A G + P+FRIFNP+ Q +KFD +G ++R+++P+L++L
Sbjct: 381 TLVDADIANNSANWQWVAGCGADAAPYFRIFNPVTQGRKFDPEGDYVRRWVPELARLPAD 440
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH PW+A LE AG++LG+ YP+PI++H +++ L K
Sbjct: 441 AIHEPWRAKPIVLEAAGVVLGQTYPEPIVDHDAARQRALGALELTKR 487
>gi|423097276|ref|ZP_17085072.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q2-87]
gi|397885561|gb|EJL02044.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q2-87]
Length = 483
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/441 (33%), Positives = 247/441 (56%), Gaps = 27/441 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I+F +++ L++ LQ + L+IR A ++ ++++ +LNI AV +N +Y
Sbjct: 47 KIDFWLRNLASLNVALQELNIALLIREAPHWRQAPQVLLTLCRELNISAVHVNEEYGHNE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + LK G F SY DQ++F+ +L KTG + +FS ++K ++ +
Sbjct: 107 SRRDAEVAQALKSQGVGFHSYLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHYSLPS 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
L + P + LV +I GF + + + G + A+ L+ F
Sbjct: 167 LVATPKRQAPTGLVSDPVPGQIK----------GFAPPSQALRDLWPAGETEARRRLDTF 216
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + I Y R++P+ GTS LS +L G +S R+ + + + +++ C+G TW+
Sbjct: 217 VDQHIDAYQSERDFPARPGTSQLSAYLAAGVVSPRQCLHAALQANQGEFESGCVGTVTWV 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W A W + TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRAFRPETEALAWRK---APAELEAWKQARTGLPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRMV A FL KN+ ++W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 334 MRQLLEAGWMHNRLRMVVAMFLTKNLLVDWREGERFFMQHLIDGDLAANNGGWQWSASTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS+KFD +G+FI+++LP+L+ L + +HSP + G+
Sbjct: 394 TDSAPWFRIFNPLSQSEKFDREGLFIKRWLPELNDLEKQQVHSP-------NTQGGLFGA 446
Query: 440 KNYPKPILEHSLSKKNILKRY 460
+YP PI++ S+ L +
Sbjct: 447 LDYPAPIVDLGQSRARALAAF 467
>gi|428779785|ref|YP_007171571.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
gi|428694064|gb|AFZ50214.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
Length = 476
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 259/473 (54%), Gaps = 34/473 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF FD +L + + RI+++ + EL N + SDL+I A I
Sbjct: 30 VLGVFCFDPQLL----KKDQVAPARIKYLLGCLQELQENYRRVGSDLLILNADPVTAISN 85
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L LN V N D EP + RD+ ++ L+ G ++ DQ++ +IL K+ +PY
Sbjct: 86 LAQTLNATGVFWNQDIEPYSRKRDRAVQSALEEQGITVQTFWDQLLHSPGDILTKSDEPY 145
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN----NIISLNDLGFC 178
+++ + K W ++ K+ + +KS L+ L +S+ H+ + + LNDLGF
Sbjct: 146 KVYTPFWKNWQKQDKATP----TGEIKS-LDGL--TSEEHRKADTVGVIPLPKLNDLGFS 198
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
N L + G S A+ L F + I +Y+ NRNYP+I GTS LS L+FG I IR++
Sbjct: 199 WEN--ELPLTPGESAARDRLQWFCDRAILDYDQNRNYPAIEGTSILSAALKFGAIGIREV 256
Query: 238 VKLIFKF---IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
+ + + D I W +L WR+FYQ LY +P + +++++ + WE
Sbjct: 257 WEATNQAEENTRSDEARDNIN--AWRQELAWREFYQHALYFFPELAKGPYREQFKSFPWE 314
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
++ + +F WC G TGYP++D+A+ QLN++G+MHNR RM+ ASFL K++ INW+WGE
Sbjct: 315 NN---QDHFEAWCNGETGYPIVDAAMRQLNTTGWMHNRCRMIVASFLTKDLIINWQWGEA 371
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF L D DLA+NNG WQWSASSG +P RIFNP Q++KFD G +IR +LP+L+
Sbjct: 372 YFMQTLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPDGEYIRYWLPELNS 430
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+ + + + LE+ G+ Y PI++H ++ + Y K+ L
Sbjct: 431 IDTGNLLT---GNISPLEREGL----GYTAPIIDHKQQQRKFKQLYQQQKDNL 476
>gi|418406735|ref|ZP_12980054.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens 5A]
gi|358007228|gb|EHJ99551.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens 5A]
Length = 479
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 248/449 (55%), Gaps = 16/449 (3%)
Query: 19 SQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDY 78
S G + + ++ S+ LS L+ S L++R A + +++L+ + DAV+ N Y
Sbjct: 43 SSGPLGGAQEWWVHHSLASLSAALEKCGSRLLLRSGNAEETLRRLIAETGADAVLWNRRY 102
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
EP + DK +K+ L G S+ ++ E + + K+G PY +++ + W
Sbjct: 103 EPTGMATDKTLKEALGDDGLTVRSFAGHLLHEPSRVQTKSGGPYRVYTPF---WRALEGG 159
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN-DLGFCKSNLSSLGIKTGASGAKIL 197
+ + + +S L K K+ + ++ + D S + + G + A+
Sbjct: 160 EEPHTPADAPQS-LKAPETWPKSEKLDDWKLLPVKPDWARGFSEIWT----PGENAAREK 214
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L++FI +K Y R++P+ + TS L+ HL G IS V K + +H ++ I
Sbjct: 215 LDDFIDGALKGYEEGRDFPAKDATSLLAPHLALGEISP-AAVWHATKGLSRHIASNDISR 273
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
F +L+WR+F +L+ +P + K++ +D W D+ +F W +G TGYP++
Sbjct: 274 FR--KELVWREFCYHLLFHFPELDEKNWNDSFDAFGWRDDD---TSFNAWTRGMTGYPIV 328
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+ + QL G MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D ASN NWQW A
Sbjct: 329 DAGMRQLWKHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVA 388
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
SG + PFFRIFNPI+Q +KFD +G ++R+++P+L KL KYIH P++A L+KAGI
Sbjct: 389 GSGADASPFFRIFNPILQGEKFDAEGDYVRRFVPELEKLERKYIHKPFEAPKEVLKKAGI 448
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIKN 465
LGK YP PI++H +++ L Y +KN
Sbjct: 449 ELGKTYPLPIVDHGKARERALAAYAAVKN 477
>gi|254418176|ref|ZP_05031900.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
gi|196184353|gb|EDX79329.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
Length = 488
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/471 (31%), Positives = 248/471 (52%), Gaps = 28/471 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ VFI D+ DP R G + ++ KS+ L +L+ S LI+R + +++
Sbjct: 37 ILPVFILDR---DPDRPAGAAS---LWWLDKSLRALDDSLRERGSRLILRRGDSLTQLQS 90
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ DA+ +N +EP A RD I ELK G + ++ +LN + PY
Sbjct: 91 LIEDTGADALFMNRLFEPAAFARDAEIAHELKSAGVDCRGFNGSLLARPGAVLNGSDAPY 150
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + K + + + + + I L +S+
Sbjct: 151 KVFTPFMKALLATAEPPPPTTAPRRIAT-----------PDAVQTESIDDWRLHPTRSDW 199
Query: 183 S-SLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISI-RKLVK 239
S G +GA L++F+ + +K Y R++P++ TS LS HL +G IS R +
Sbjct: 200 SKGFDWTPGEAGADAALSDFLARGLKTYAKGRDHPALPTTSRLSPHLHWGEISPWRAAQR 259
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
F +++L WRDF +L+ +P + +++F+ EY+++ W D
Sbjct: 260 ARGAADAGAVPAGEADKF--VAELGWRDFSAHLLHHFPTITDRAFRPEYESMPWRGD--- 314
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ W +G TGYPL+D+ + QL ++G+MHNR+RMV ASFL+K++ I+W+ GE +F +
Sbjct: 315 PEGLEAWKRGRTGYPLVDAGMRQLWTTGWMHNRVRMVVASFLVKHLLIDWREGEAWFWDT 374
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D DLASN NWQW A SG + P+FRIFNPI Q +KFD G ++R+++P+L +L +++
Sbjct: 375 LVDADLASNVQNWQWVAGSGADAAPYFRIFNPITQGEKFDATGGYVRRWVPELRRLPDRW 434
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+ SPW A L AG+ LGK+YP PIL+H+ ++ L + +K + R+
Sbjct: 435 LPSPWTAPPEVLRDAGVRLGKDYPHPILDHAQARARAL---DALKTVTGRD 482
>gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium fabrum str. C58]
gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium fabrum str. C58]
Length = 479
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/449 (33%), Positives = 250/449 (55%), Gaps = 16/449 (3%)
Query: 18 RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHD 77
+S G + + ++ S+ LS +L+ L++ A + ++ L+ + D V+ N
Sbjct: 42 KSAGPLGGAQEWWLHHSLAALSSSLEKAGGRLVLASGDAERILRDLISETGADTVVWNRR 101
Query: 78 YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
Y+P + DK +K++L+ G S+ Q++ E + + K+G PY +++ + W
Sbjct: 102 YDPTGMATDKALKQKLRDDGLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPF---WRALEG 158
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN-DLGFCKSNLSSLGIKTGASGAKI 196
S++ + + P KS V K K+ N ++ D S++ + G +GA
Sbjct: 159 SDEPHAPADPPKSLTAPKVWP-KSEKLSNWKLLPTKPDWAKDFSDIWT----PGETGALD 213
Query: 197 LLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIG 255
L++FI +K Y R++P+ TS LS HL G IS V K + +H ++ I
Sbjct: 214 KLDDFIDGALKGYEEGRDFPAKPATSLLSPHLAAGEISP-AAVWHATKGLSRHIASNDIS 272
Query: 256 YFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
F +++WR+F +L+ +P + K++ +D W D +K+F W +G TGYP+
Sbjct: 273 RFR--KEIVWREFCYHLLFHFPELGEKNWNDSFDAFSWRDD---EKSFKAWTRGMTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL G MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D ASN NWQW
Sbjct: 328 VDAGMRQLWQHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWV 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
A SG + PFFRIFNPI+Q +KFD G ++R+++P+L KL KYIH P++A L+KAG
Sbjct: 388 AGSGADASPFFRIFNPILQGEKFDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAG 447
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ LGK YP PI++H +++ L Y +K
Sbjct: 448 VELGKTYPLPIVDHGKARERALAAYAAVK 476
>gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
Length = 462
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 163/458 (35%), Positives = 254/458 (55%), Gaps = 41/458 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V FIFD ++ D ++F+ + EL+ L ++ L + +K ++
Sbjct: 44 VIPAFIFDDR---QIKDNDYKSDNAVQFMIACLKELNDQLHQLNARLYFFEGLTAKVVES 100
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ L I+AV +N DY P + RD IK + F + D ++ E E+L G PY
Sbjct: 101 LIKTLGIEAVFVNKDYTPFSKKRDNEIKAICERERVDFKEHFDVLLHEPTEVLKDNGMPY 160
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
F+ + KK K + Q K+Y + SS I+L F ++
Sbjct: 161 IKFTDFLKK---SKKIDVREPQKNKFKNYFTEEISSS----------IALQVDKFPQN-- 205
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+L +K G + +K +KNY+ RN PSI+GT+ LS HL+FGT+S+R++ +
Sbjct: 206 ENLILKGGRKEGLSYIERIVK-LKNYSETRNTPSIDGTTKLSPHLKFGTVSVREVYGKVN 264
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ ++ ++QL WRDF+ ILY +P+V+ SFK++Y+ I WE+D
Sbjct: 265 ENFGNEHEI--------ITQLHWRDFFTHILYHFPHVLGNSFKEKYNQIQWEND---VDK 313
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC G TGYP++D+ + QLN +G+MHNR+RM+T SFL+K++ I+W+WGE YFA +L D
Sbjct: 314 FKAWCTGRTGYPIVDAGMRQLNLTGWMHNRVRMITGSFLVKDLHIDWRWGEKYFAQRLVD 373
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D A NNGNWQW AS+GC +QPFFRIFNPI+Q +KFD + +I+ +LP+L+ L+ + IH+
Sbjct: 374 YDPAINNGNWQWVASTGCDAQPFFRIFNPILQQQKFDPECNYIKTWLPELTNLNLEQIHT 433
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
I +YP PI++H ++ + K Y
Sbjct: 434 -----------LNIPKDIDYPTPIVDHKVASEKAKKLY 460
>gi|425439515|ref|ZP_18819837.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
gi|389720241|emb|CCH96030.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
Length = 474
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 161/460 (35%), Positives = 258/460 (56%), Gaps = 29/460 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ + I R+ ++ + EL N + S L+I S+ + L
Sbjct: 34 VFCLDPAILE----RDDIAPARVAYLLGCLEELEKNYRQKGSQLLIICGNPSQTLVNLAG 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEVETFWDQLLHAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K++ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKASPKTLEN--LQGLDEN--EGEKLAETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A+ L F + I NY +RN+P+ +GTS LS L+FG I IR + +
Sbjct: 202 PLAPGEKAARSRLEEFCQGVINNYQEDRNFPAFDGTSRLSAALKFGAIGIRTIWTATLEL 261
Query: 245 I---KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + D I TW +L WR+FYQ LY +P + +++KE+ + W+ DN ++
Sbjct: 262 LENCRAEEAKDSI--ITWQQELAWREFYQHCLYFFPELAVGAYRKEFRHFPWQ-DN--EE 316
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL
Sbjct: 317 HFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLF 376
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+
Sbjct: 377 DGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEYIRQWLPELASVDTEYLV 435
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ K + + G YP+PI++H+ +K + Y+
Sbjct: 436 TG-KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
Length = 474
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/471 (33%), Positives = 254/471 (53%), Gaps = 42/471 (8%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ + I R+ ++ + +L + S L+I + + I L
Sbjct: 34 VFCLDPTILE----RDDIAPARVTYMIGCLEQLQQGYRQAGSQLLILHQDPRQGIPNLAA 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L AV N D EP + RD+ + LK G ++Y DQ++ EI K+G PYS++
Sbjct: 90 ALEAKAVCWNWDVEPYSKERDQDVAAGLKEKGIAVYNYWDQLLHAPGEIFTKSGNPYSVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN--------DLGF 177
+ + K W + K+ PV + L L +I +N ++ DLG+
Sbjct: 150 TPFWKNWQGQSKAE-------PVAT----LTRVESLTEIEQDNALAAGVTDLPSAIDLGY 198
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
N L + G A+ +L F + I +Y+ RN+P ++GTS LS L+FG I IR+
Sbjct: 199 VWEN--ELLVPPGEKVAQEILEEFCDRTIGDYHEQRNFPGVDGTSKLSAALKFGVIGIRR 256
Query: 237 LVKLI---FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
+ + + + I TW +L WR+FYQ +Y +P + +++++ + W
Sbjct: 257 VWQAAQNAYNLSRSDEARQSIQ--TWQQELAWREFYQHAMYFFPELAQGPYRQKFQDFPW 314
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
+++ + F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE
Sbjct: 315 DNN---PEFFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQWGE 371
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YF +L+D DL++NNG WQWSASSG +P RIFNP Q+KKFD G +IR++LP+LS
Sbjct: 372 KYFMQRLSDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDPDGEYIREWLPELS 430
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ +Y+ S K+ ++G + YP PI++H+ ++ + Y ++
Sbjct: 431 SVDTEYV------VSGKIPESGREMC-GYPAPIVDHNQQQRRFKELYKELQ 474
>gi|425471493|ref|ZP_18850353.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
gi|389882607|emb|CCI36943.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
Length = 474
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 161/460 (35%), Positives = 256/460 (55%), Gaps = 29/460 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ I R+ ++ + EL N + S L+I S+ + L
Sbjct: 34 VFCLDPAILE----GDDIAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAG 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQKKGIEVETFWDQLLHAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K++ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKASPTTLEN--LQGLDEN--EGDKLTETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A L F + I NY +RN+P+ +GTS LS L+FG I IR + +
Sbjct: 202 PLTPGEKAAHSRLEEFCQGVINNYQEDRNFPAFDGTSRLSAALKFGAIGIRTIWTATLEL 261
Query: 245 I---KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + D I TW +L WR+FYQ LY +P + +++KE+ + W+ DN ++
Sbjct: 262 LENCRAEEAKDSI--ITWQQELAWREFYQHCLYFFPELAEGAYRKEFRHFPWQ-DN--EE 316
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL
Sbjct: 317 HFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLF 376
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+
Sbjct: 377 DGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEYIRQWLPELASVDTEYLV 435
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ K + + G YP+PI++H+ +K + Y+
Sbjct: 436 TG-KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
Length = 482
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 157/464 (33%), Positives = 257/464 (55%), Gaps = 25/464 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F D NIL + + R+ ++ + EL S L+I A ++ I K
Sbjct: 31 VVGIFCLDFNIL----QRDDVAPARVAYMIGCLQELQRRYLEAGSQLLILQAEPTQGIPK 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L I L AV N D EP + RD + LK G K ++ DQ++ +EI G Y
Sbjct: 87 LAIALQAKAVFWNLDVEPYSRERDDAVSNALKQAGIKVENFWDQLLHAPDEIRTGMGTKY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN----IISLNDLGFC 178
++++ + K W+ K K+ + + P+ S ++K +I + + S +LGF
Sbjct: 147 TVYTPFWKNWVSKPKAEP--VDTLPIMSLEQLTGLTAKEQEIAKLSGTIRLPSAKELGFV 204
Query: 179 KSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ + L I+ G GA+ L++F + I +Y+ RN+P+++GTS LS L+FG I IR +
Sbjct: 205 WN--APLIIEPGEDGAQEKLDDFCDRAIYDYDKQRNFPALDGTSQLSAALKFGAIGIRTV 262
Query: 238 VKLIFKFIKK-HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ ++K H + I TW +L WR+FYQ +Y +P + N ++++ + + W+++
Sbjct: 263 WQATVTVMEKCHTEAARINIQTWQQELAWREFYQHAMYNFPELANGAYREAFKDFPWDNN 322
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
++ F WC+G TGYP+ID+A+ Q+N +G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 323 ---QELFQAWCEGKTGYPIIDAAMRQMNQTGWMHNRCRMIVASFLTKDLIINWQWGEKYF 379
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
L D DL++NNG WQWSASSG +P RIFNP Q +KFD + +IRK++P+L +
Sbjct: 380 MQNLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPFTQGQKFDPKSEYIRKWVPELRWID 438
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+ + +E+ I YP+PI++H+ ++ + Y
Sbjct: 439 TASLLA---GKITPIERRSI----GYPEPIVDHNQQQRRFKELY 475
>gi|329764714|ref|ZP_08256309.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329138764|gb|EGG43005.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 451
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 166/451 (36%), Positives = 262/451 (58%), Gaps = 43/451 (9%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV FI D +ILD L+ + RI+F+ +S+ +L+ L ++L I + + I+
Sbjct: 32 EVIPCFILDTDILDNLKKSRL----RIKFLNESLKDLNEQLIKRKTNLRIFRGRSEEIIE 87
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
K++++ ID V +N DY A +++ IKK F + D ++ +EI K KP
Sbjct: 88 KIILENKIDGVFLNGDYTKFAQLKENKIKKICNQKNIGFNKFADYLLHVPDEIHTKEQKP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y+++S++ K ++ PV+S + N + L KI N+N + + +
Sbjct: 148 YTVYSYFYKT-----------AKTIPVRSKIKNNFRNYSLDKIKNDNSLEI-------TI 189
Query: 182 LSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ ++ G A +L N I + KNY R+YP ++ T+ LS H+RFGTIS+R+
Sbjct: 190 ENKEKMEGGRRNALKILKN-ISEYKNYQKTRDYPGLDKTTKLSAHIRFGTISVRE----A 244
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
++ IK++ D T ++QL WR+F+ +L+ +PN +++FKK++ I W ++ K+
Sbjct: 245 YQAIKENLGID----HTLINQLYWREFFTYVLHHFPNSKSRTFKKKFRKIPWSTN---KQ 297
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+ WCKG TG+P++D+ + QLN +G+MHNR+RM+ ASFL K+M I+WK GE YFA KL
Sbjct: 298 EYHTWCKGETGFPIVDAGMRQLNKTGFMHNRVRMIVASFLTKDMHIDWKLGERYFAEKLV 357
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+D A N GNWQW+AS+GC + P+FRIFNP IQ +KFD +I+K++P+L L KYIH
Sbjct: 358 DYDPAVNAGNWQWAASTGCDAVPYFRIFNPWIQQEKFDSNCNYIKKWIPELETLQPKYIH 417
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLS 452
+ WK G YPKPIL H +
Sbjct: 418 NLWKKYPE---------GLTYPKPILNHKIE 439
>gi|425464194|ref|ZP_18843516.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
gi|389833855|emb|CCI21283.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
Length = 474
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 161/460 (35%), Positives = 257/460 (55%), Gaps = 29/460 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ + I R+ ++ + EL N + S L+I S+ + L
Sbjct: 34 VFCLDPAILE----RDDIAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAG 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEVETFWDQLLHAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K++ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKASPKTLEN--LQGLEEN--EGEKLTETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A L F + I NY +RN+P+ +GTS LS L+FG I IR + +
Sbjct: 202 PLAPGEKAAHSRLEEFCQGVINNYQEDRNFPAFDGTSRLSAALKFGAIGIRTIWTATLEL 261
Query: 245 IK---KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
++ D I TW +L WR+FYQ LY +P + +++KE+ + W+ DN ++
Sbjct: 262 LENCCAQEAKDSI--ITWQQELAWREFYQHCLYFFPELAVGAYRKEFRHFPWQ-DN--EE 316
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL
Sbjct: 317 HFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLF 376
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+
Sbjct: 377 DGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEYIRQWLPELASVDTEYLV 435
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ K + + G YP+PI++H+ +K + Y+
Sbjct: 436 TG-KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|425462955|ref|ZP_18842418.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
gi|389823910|emb|CCI27577.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
Length = 474
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 161/460 (35%), Positives = 257/460 (55%), Gaps = 29/460 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ I R+ ++ + EL N + S L+I S+ + L
Sbjct: 34 VFCLDPAILE----GDDIAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAG 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEVETFWDQLLQAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K++ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKASPKTLEN--LQGLDEN--EGEKLAETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A+ L F + I NY +RN+P+ +GTS LS L+FG I IR + +
Sbjct: 202 PLAPGEKAARSRLEEFCQGVINNYQEDRNFPAFDGTSRLSAALKFGAIGIRTIWTATLEL 261
Query: 245 I---KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + D I TW +L WR+FYQ LY +P + +++KE+ + W+ DN ++
Sbjct: 262 LENCRAQEAKDSI--ITWQQELAWREFYQHCLYFFPELAVGAYRKEFRHFPWQ-DN--EE 316
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL
Sbjct: 317 HFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLF 376
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+
Sbjct: 377 DGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEYIRQWLPELASVDTEYLV 435
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ K + + G YP+PI++H+ +K + Y+
Sbjct: 436 TG-KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|325292582|ref|YP_004278446.1| DNA photolyase [Agrobacterium sp. H13-3]
gi|325060435|gb|ADY64126.1| DNA photolyase [Agrobacterium sp. H13-3]
Length = 479
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 250/448 (55%), Gaps = 14/448 (3%)
Query: 19 SQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDY 78
S G + + ++ S+ LS L+ S L++R A + +++L+ + DAV+ N Y
Sbjct: 43 SSGPLGGAQEWWLHHSLASLSAALEKCGSRLLLRSGNAEETLRRLIAETGADAVLWNRRY 102
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
EP + DK IK+ L G S+ ++ E + + K+G PY +++ + W S
Sbjct: 103 EPTGMATDKAIKEALGDDGLTVRSFAGHLLHEPSRVQTKSGGPYRVYTPF---WRALEGS 159
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ + + +S L SK K+ + ++ + + K + S + G + A+ L
Sbjct: 160 EEPHTPADAPQS-LKAPETWSKSEKLDDWKLLPVKP-DWAK-DFSEI-WTPGENAAREKL 215
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
++FI +K Y R++P+ + TS L+ HL G IS V K + +H ++ I F
Sbjct: 216 DDFIDGALKGYEEGRDFPAKDATSLLAPHLALGEISP-AAVWHATKGLSRHIASNDISRF 274
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
+L+WR+F +L+ +P + K++ + W D+ +F W +G TGYP++D
Sbjct: 275 R--KELVWREFCYHLLFHFPELDEKNWNDSFGAFGWRDDD---TSFNAWTRGMTGYPIVD 329
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+ + QL G MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D ASN NWQW A
Sbjct: 330 AGMRQLWKHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAG 389
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
SG + PFFRIFNPI+Q +KFD +G ++R+++P+L +L KYIH P++A L+KAGI
Sbjct: 390 SGADASPFFRIFNPILQGEKFDAEGDYVRRFVPELERLERKYIHKPFEAPKEVLKKAGIE 449
Query: 438 LGKNYPKPILEHSLSKKNILKRYNFIKN 465
LGK YP PI++H +++ L Y +KN
Sbjct: 450 LGKTYPLPIVDHGKARERALAAYAEVKN 477
>gi|428201469|ref|YP_007080058.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
gi|427978901|gb|AFY76501.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
Length = 477
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 164/469 (34%), Positives = 257/469 (54%), Gaps = 28/469 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D+N+L + I RI ++ + EL S L+I ++ I
Sbjct: 31 VVGVFCLDRNLL----KRDDIAPARITYMIGCLQELQQKYLQLGSQLLIVQGDPNQAITA 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L + AV N D EP A RD+ +K+ LK G ++ DQ++ +I+ ++G Y
Sbjct: 87 LAEALKVQAVFFNLDIEPYAKQRDEKVKEALKEKGIAVETFWDQLLEAPGKIVTQSGNLY 146
Query: 123 SIFSFYQKKWIEKVKSNKCY-LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+++S + + W ++ K + L++ VK + + +K I + + DLGF N
Sbjct: 147 TVYSPFWRNWSQQSKQSPAQDLEN--VKGLTDQEIAIAKKAGTIE--LPTAKDLGFIWDN 202
Query: 182 LSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
L + G + A+ L F + I Y RN+P+I+GTS LS L+FG I IR + +
Sbjct: 203 --PLLLAPGETAAQERLAEFCDRAIYEYKEQRNFPAIDGTSRLSAALKFGAIGIRTVWQA 260
Query: 241 IFKF---IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + +D I W +L WR+FYQ LY +P + +++K + N WE++
Sbjct: 261 TIEAGENSRSDEASDSIQ--AWQQELAWREFYQHCLYFFPELAEGAYRKNFKNFFWENN- 317
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
++ F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ IN + GE YF
Sbjct: 318 --EEYFQAWCEGKTGYPIVDAAMKQLNETGWMHNRCRMIVASFLTKDLLINPQLGEKYFM 375
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D DLA+NNG WQWSASSG +P RIFNP QS+KFD Q +IR++LP+LS +
Sbjct: 376 QKLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDPQAEYIRQWLPELSSIDT 434
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+Y+ + K + ++ G YP+PI++H+ +K +RY I+
Sbjct: 435 EYLVTG-KIPDSERDRCG------YPRPIVDHNRQQKEFKRRYQLIQTT 476
>gi|398974400|ref|ZP_10685027.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM25]
gi|398141602|gb|EJM30518.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM25]
Length = 488
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 157/450 (34%), Positives = 253/450 (56%), Gaps = 30/450 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+F +++ ELS +L + L+IR A A + +L +L I+AV +N +Y
Sbjct: 54 KIDFWLRNLRELSKSLGALNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINE 113
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F SY DQ++F+ +L KTG + +FS ++K E++ +
Sbjct: 114 SRRDEAVAEALQAEGITFHSYLDQLLFKPGSVLTKTGTYFQVFSQFRKVCYERLHRSMPS 173
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
L+ P K N+ S + + I GF S + G + A+ L+ F
Sbjct: 174 LKQAPGKQSALNIA-SDPVPEAIE---------GFPTPGESLRALWPAGEAEARRRLDTF 223
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+I Y R++P+ GTS LS +L G IS R+ + + + +++ +G TW+
Sbjct: 224 ADAQIDYYKSERDFPAKPGTSQLSAYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTWI 283
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W A + W + TG P+ID+A
Sbjct: 284 NELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APEELAAWQEARTGLPIIDAA 340
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 341 MRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTG 400
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS+KFD +G+FI+ +LP+L+ L+ K +H+P A G+
Sbjct: 401 TDSAPYFRIFNPVSQSEKFDSEGLFIKHWLPELAGLNKKEVHNPASA-------GGLFGV 453
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNR 469
+YP PI+ S S++ L + KN+ +R
Sbjct: 454 ADYPAPIVNLSASRERALTAF---KNLPSR 480
>gi|397172196|ref|ZP_10495590.1| deoxyribodipyrimidine photolyase [Alishewanella aestuarii B11]
gi|396086208|gb|EJI83824.1| deoxyribodipyrimidine photolyase [Alishewanella aestuarii B11]
Length = 480
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 259/461 (56%), Gaps = 39/461 (8%)
Query: 9 FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLN 68
++ + + PLR Q ++ RR++ + + L+I L + YA + I L + L
Sbjct: 47 WNAHQMAPLR-QDLLR-RRVQAMQTELAALNIPLLAVEG---TDYASCAPLIAAL-LPLG 100
Query: 69 IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFY 128
+ A+ +YE + RD+ + L G + I I + G+ Y +F+ +
Sbjct: 101 VKALYAQVEYELREQRRDQQVSALLAQQGVAAHWFDRLCIMPPGSIRTQQGEIYKVFTPF 160
Query: 129 QKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK 188
++ W++++ S+ +Q YP + + + +SL L ++ S G
Sbjct: 161 KRNWLQRLASDG--IQCYPKPT-------------LQTEHTLSLPALAPMQAPDQSSG-D 204
Query: 189 TGASGAKIL--LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
S A+IL + +F + ++ Y R++P+I GTS LS +L G IS ++ V +
Sbjct: 205 WPVSEAEILTRMRSFCQQRVSAYQQERDFPAIAGTSQLSPYLAIGVISAQQCVARLQLEA 264
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFL 304
K+ + G WLS+LIWRDFY+ IL +P+++ +++F+ E D I W ++ + F
Sbjct: 265 KEAMWQEKSGAAVWLSELIWRDFYKHILVAFPHLIKHRAFQAETDLIRWPNE---QARFT 321
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
WC+G TGYP++D+AI QLN +G+MHNRLRM+TASFL+K++ I+W+WGE YF +KL D D
Sbjct: 322 AWCRGETGYPIVDAAIRQLNQTGWMHNRLRMITASFLVKDLHIDWRWGEQYFMSKLLDGD 381
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
A+NNG WQW+AS+G + P+FRIFNP+ QS++FD G FIR+++P+LS + K +H P
Sbjct: 382 FAANNGGWQWAASTGTDAAPYFRIFNPVTQSERFDPSGDFIRRFVPELSAKTGKDLHWPH 441
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ K Y KPI++H+ ++K L + +K
Sbjct: 442 R----------LVTPKGYVKPIVDHNEARKQTLALFAAVKG 472
>gi|260774030|ref|ZP_05882945.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14]
gi|260610991|gb|EEX36195.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14]
Length = 475
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 243/445 (54%), Gaps = 29/445 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FI++ + L L + L + Y AS+ + + L+++ V++N DYE
Sbjct: 48 QADFIYRRLFTLQQELAALNIPLFYKQVDDYQQASQVVSEFAQSLSVNQVLVNRDYEWNE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD ++ L +G + + D+ + ++LNK G+ + +F+ +++ W+ +
Sbjct: 108 QQRDSQTEQALSTLGIDWLACDDKCLLTPGQVLNKQGEYFKVFTPFKRAWLSRF--TPPV 165
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
+ S P + +N L+ S +N + F +SS + L F
Sbjct: 166 IVSTPTAA-VNPLLDS-------EHNALWNERQDFAYPRVSSDQWPVDFETVRHQLRQFC 217
Query: 203 KK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
++ I +Y+ R++P+ GTS LS +L G +S+R+ + ++ + + G WLS
Sbjct: 218 QQSIDDYHQQRDFPAQEGTSRLSPYLAIGMLSVRQCIARMYAQSQSGLLSS--GAEIWLS 275
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+LIWR+FYQ +L + K+F D + W D K+ F WC+G TGYP++D+A+
Sbjct: 276 ELIWREFYQHLLVFESKLSKGKAFHSWGDQLQWSDD---KQAFARWCEGNTGYPIVDAAM 332
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QLN +G+MHNRLRMV ASFL K++ I+W WGE YF +L D D A+NNG WQW AS+GC
Sbjct: 333 RQLNQTGWMHNRLRMVVASFLTKDLHIDWHWGERYFMQQLIDGDYAANNGGWQWCASTGC 392
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
QP+FRIFNPI Q ++FD G FIR+++P+L+ + YIH+PWK K
Sbjct: 393 DGQPYFRIFNPITQGERFDPSGQFIRQWVPELASVPTAYIHTPWKWPGVK--------SL 444
Query: 441 NYPKPILEHSLSKKNILKRYNFIKN 465
YP P+++H ++++ L+ Y K+
Sbjct: 445 LYPSPMVDHKVAREVTLRLYKEAKD 469
>gi|77460957|ref|YP_350464.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
Pf0-1]
gi|77384960|gb|ABA76473.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
Pf0-1]
Length = 488
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 157/451 (34%), Positives = 255/451 (56%), Gaps = 30/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+F +++ +LS +L + + L+IR A A + +L +L I+AV +N +Y
Sbjct: 54 KIDFWLRNLHKLSKSLGDLNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINE 113
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + K L+ G F SY DQ++F+ +L +TG + +FS ++K E + +
Sbjct: 114 SRRDAAVAKALQAEGITFHSYLDQLLFKPGSVLTRTGTYFQVFSQFRKVCYEHLHRSMPS 173
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
L+ P K N+ S + + I GF S + G + A+ L+ F
Sbjct: 174 LKQAPGKQSALNIA-SDPVPEAIE---------GFPTPGASLRALWPAGETEARRRLDTF 223
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+I Y R++P+ GTS LS +L G IS R+ + + + +++ +G TW+
Sbjct: 224 ADAQIDYYKSERDFPAKPGTSQLSAYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTWI 283
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E +++ W + A ++ W + TG P+ID+A
Sbjct: 284 NELLWREFYKHILVGYPRVSRHRAFRPETEDLAWRN---APEDLAAWQEARTGLPIIDAA 340
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 341 MRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTG 400
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS+KFD +G+FI+ +LP+L+ L+ K IH+P G+
Sbjct: 401 TDSAPYFRIFNPVSQSEKFDSEGLFIKHWLPELAGLNKKEIHNP-------ASVGGLFGV 453
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP PI+ S S++ L + KN+ +R+
Sbjct: 454 ADYPAPIVNLSASRERALAAF---KNLPSRS 481
>gi|390437938|ref|ZP_10226447.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
gi|389838649|emb|CCI30571.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
Length = 474
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 159/458 (34%), Positives = 255/458 (55%), Gaps = 25/458 (5%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ I R+ ++ + EL N + S L+I S+ + L
Sbjct: 34 VFCLDPAILE----GDDIAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAS 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEVETFWDQLLHAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K++ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKASPKTLEN--LQGLDEN--EGEKLAETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A L F + I NY +RN+P+ +GTS LS L+FG I IR + +
Sbjct: 202 PLTPGEKAATSRLEEFCQGVINNYQEDRNFPAFDGTSRLSAALKFGAIGIRTIWTATLEL 261
Query: 245 IKKHYKTDCI-GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNF 303
++ + TW +L WR+FYQ LY +P + +++KE+ + W+ DN +++F
Sbjct: 262 LENCRAEEAKNSIITWQQELAWREFYQHCLYFFPELAVGAYRKEFRHFPWQ-DN--EEHF 318
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL D
Sbjct: 319 QAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDG 378
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+ +
Sbjct: 379 DLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDLEGEYIRQWLPELASVDTEYLVTG 437
Query: 424 WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
K + + G YP+PI++H+ +K + Y+
Sbjct: 438 -KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|389878514|ref|YP_006372079.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
gi|388529298|gb|AFK54495.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
Length = 489
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/438 (32%), Positives = 234/438 (53%), Gaps = 22/438 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ +S++ L +L+ L++ A++EI L ++ AV+IN Y+P+ RD+ I
Sbjct: 61 WLHRSLLALDADLRAIGGRLLLLKGPAAREIPALARRIGAGAVLINRVYDPEGAARDRAI 120
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
+ LK G + ++ E I KTG PY +F+ + W + +K +
Sbjct: 121 GERLKADGIHMAGHNALLLHEPWTIETKTGGPYQVFTPF---W--RAARDKGEIPPPLAA 175
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT----GASGAKILLNNFI-KK 204
+LV + + L L + GI G++GA+ L F+ +
Sbjct: 176 PDRLDLVEDAP-------EGVPLAALDLLPRIDWAGGIAASWTPGSAGARDRLAGFLNRA 228
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI--GYFTWLSQ 262
+ Y +R+ P+ TS LS HLRFG I R + + I+ T T+L++
Sbjct: 229 LTGYKPDRDRPAGETTSRLSPHLRFGEIGPRTVWHAVHHAIEAQGLTGPARASADTFLTE 288
Query: 263 LIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
L WR+F +L+ +P++ + K+ W D A W +G TGYP++D+ + Q
Sbjct: 289 LGWREFSYHLLHHFPHLPARDLKETLTGFPWREDAAA---LDAWQRGRTGYPIVDAGMRQ 345
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
L +G+MHNR+RMV ASFL+K++ I WK GE +F + L D D ASN +WQWSA +G +
Sbjct: 346 LWHTGWMHNRVRMVVASFLVKHLMIWWKPGEAWFWDTLVDADPASNTASWQWSAGTGADA 405
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNY 442
P+FRIFNP++Q ++FD G ++R+++P+L+KL ++Y+H PW A + L AGI G+ Y
Sbjct: 406 APYFRIFNPVLQGERFDGDGAYVRRWVPELAKLPDRYLHKPWTAPASVLATAGIRPGQTY 465
Query: 443 PKPILEHSLSKKNILKRY 460
P PI++H +++ L Y
Sbjct: 466 PAPIVDHDQARERALAGY 483
>gi|217972489|ref|YP_002357240.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
gi|217497624|gb|ACK45817.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
Length = 499
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 217/371 (58%), Gaps = 19/371 (5%)
Query: 96 IGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNL 155
+G ++ + + +LN +G Y +F+ + +KW E + + L PV + L +
Sbjct: 141 VGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE-IAARHAIL-PLPVPAPLGPV 198
Query: 156 VHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNY 214
+ K H + NN+ + +SS G AK +L+ FI+ K+++Y +R++
Sbjct: 199 LTEPKPH--LFNNV----------TKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDF 246
Query: 215 PSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILY 274
PSI+GTS +S +L G +S R+ V + + D TWL++L WR+FY+ +L
Sbjct: 247 PSIDGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLV 306
Query: 275 CYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRL 333
+P++ N +F ++ D++ W ++ + F WC+G TGYP++D+A+ QLN +G+MHNRL
Sbjct: 307 AFPDLSKNHNFNRQADHVQWRNN---PQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRL 363
Query: 334 RMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPII 393
RMV ASFL K++ I+W+WGE YF KL D DLA+NNG WQWSA GC +QP+FRIFNP+
Sbjct: 364 RMVVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMS 423
Query: 394 QSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSK 453
QS+KFD G FIRKYLP+L+ K +H P A + L + YP I+EHS ++
Sbjct: 424 QSEKFDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAAR 483
Query: 454 KNILKRYNFIK 464
L +K
Sbjct: 484 SRALTVLGVLK 494
>gi|389695632|ref|ZP_10183274.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
gi|388584438|gb|EIM24733.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
Length = 492
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/445 (32%), Positives = 243/445 (54%), Gaps = 23/445 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L+ + L + A ++++ + A+ N Y I D +
Sbjct: 57 WLHGSLRALGESLEQAGASLALFEGPAPSVVERVARETGASAIFWNRRYGAAEIALDTAV 116
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
KK L G K S+ +++ E +I+N+ G+P+ +F+ Y + V + P K
Sbjct: 117 KKRLTDSGIKAHSFNGRLLHEPWDIVNQAGRPFQVFTPY----LRTVMTRGLKAALAPPK 172
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS-SLGIKT----GASGAKILLNNFIKK 204
+ SS L + I L +LG S+ + G++T G A+ +F+ K
Sbjct: 173 RIPGGIWPSSLL-----ASTIPLEELGLEPSSPDWAGGLRTAWRPGEEAARKSFRHFLSK 227
Query: 205 -IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH--YKTDCIGYFTWLS 261
++ Y NR+ PS+ GTS LS HLRFG IS R++ + + +H D Y LS
Sbjct: 228 GLRGYAENRDRPSLIGTSRLSPHLRFGEISPRQIWHAVTAQVAEHPSLARDAEKY---LS 284
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+++WRDF +L+ +P++ +S +D W D K W +G TGYP++D+ +
Sbjct: 285 EIVWRDFSHQLLHFHPHLPVRSHSSRFDAFPWIDD---PKTLKAWRRGRTGYPIVDAGMR 341
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
QL +G+MHNR+RM+TASFL+K++ +W+ GE +F + L D D A+N +WQW A SG
Sbjct: 342 QLWQTGWMHNRVRMITASFLVKHLLTDWRKGEAWFWDTLVDADPANNAFSWQWVAGSGPD 401
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
S PF RIFNP+ Q +KFD G ++R ++P+L+ L + ++H PW A L++AGI LG+
Sbjct: 402 SAPFHRIFNPVTQGEKFDPDGDYVRTFVPELAGLPSTFLHHPWDAPPAVLQEAGISLGET 461
Query: 442 YPKPILEHSLSKKNILKRYNFIKNI 466
YP+PI+ H L+++ L+ + ++ +
Sbjct: 462 YPEPIVVHGLARERALQTFRSLRGL 486
>gi|425452606|ref|ZP_18832423.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
gi|389765542|emb|CCI08602.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
Length = 474
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 255/458 (55%), Gaps = 25/458 (5%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ I R+ ++ + EL N + S L+I S+ + L
Sbjct: 34 VFCLDPAILE----GDDIAPARVAYLLGCLEELEKNYRQKGSQLVIIRGNPSQTLVNLAG 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEVETFWDQLLQAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K+ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKARPKTLEN--LQGLDEN--EGEKLTETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A L F + I NY +RN+P+ +GTS LS L+FGTI IR + +
Sbjct: 202 PLTPGEKAALSRLEEFCQGVINNYQEDRNFPAFDGTSRLSAALKFGTIGIRTIWTATLEL 261
Query: 245 IKKHYKTDCI-GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNF 303
++ + TW +L WR+FYQ LY +P + +++KE+ + W+ DN +++F
Sbjct: 262 LENCRAEEAKNSIITWQQELAWREFYQHCLYFFPELAVGAYRKEFRHFPWQ-DN--EEHF 318
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL D
Sbjct: 319 QAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDG 378
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+ +
Sbjct: 379 DLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEYIRQWLPELASVDTEYLVTG 437
Query: 424 WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
K + + G YP+PI++H+ +K + Y+
Sbjct: 438 -KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|428213636|ref|YP_007086780.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
gi|428002017|gb|AFY82860.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
Length = 479
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/467 (33%), Positives = 243/467 (52%), Gaps = 26/467 (5%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D NIL I R++++ + EL N S L I + + I +L
Sbjct: 34 VFCLDPNIL----KGADIAPARVKYMLGCLAELQENYAKIGSQLFILFDEPRQAIAQLAT 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L V N D EP + RD+ ++ LK G ++ DQ++ EI + TG PY+++
Sbjct: 90 ALQAQFVYWNLDIEPYSQDRDQAVRSALKEQGIAVETFWDQLLHFPGEICSNTGNPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNII--SLNDLGFCKSNLS 183
+ + K WI + K+ P +L + + + +L DLG N
Sbjct: 150 TPFWKNWIRQTKAEPA-----PGLEQAISLTEAEQERAKNAGEVALPTLKDLGLSWDN-- 202
Query: 184 SLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
L ++ G S A+ L F + I +Y+ RN+P++ GTS LS L+FG I IR +
Sbjct: 203 PLMLEPGESAARSQLEEFSDRTIYDYDEQRNFPAVPGTSLLSAALKFGAIGIRTVWNATL 262
Query: 243 KFIKKHYKTDCI-GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
++ + G TW +L WR+FYQ LY +P + ++ + + WE++ ++
Sbjct: 263 NAAEQCRSDETRKGVQTWQQELAWREFYQQALYHFPELATGPYRDTWKDFPWENN---EE 319
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF KL
Sbjct: 320 LFHAWCQGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEQYFMQKLY 379
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR+++ +L + + +
Sbjct: 380 DGDLAANNGGWQWSASSGMDPKP-LRIFNPTTQTQKFDPEGDYIREWVSELRSMETEALI 438
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILN 468
S K + E G YP PI+ H+ ++ Y K ++
Sbjct: 439 SG-KILPLERESCG------YPAPIVNHNEQQRRFKALYQQQKALME 478
>gi|189209473|ref|XP_001941069.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187977162|gb|EDU43788.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 632
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/450 (34%), Positives = 248/450 (55%), Gaps = 19/450 (4%)
Query: 22 IIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHD 77
I+ + +F +S+ L L+ D L I + + K +++L N+ V N +
Sbjct: 182 IVSPPKCDFELRSVELLKKELEELDIPLYIETIPERRNVTKRLVELAQEWNVKNVFCNLE 241
Query: 78 YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
YEP + R++ + + + G F Y D + + + GK Y+++S + + WI +
Sbjct: 242 YEPDELRREERLVRMMLEKGIGFDPYHDDCVVPPGSLKSGAGKQYAVYSPWCRAWIAHLH 301
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLND----LGFCKSNLSSLGIKTGASG 193
S+ L P+ N +K K+ + ++ S+ + K S L A+
Sbjct: 302 SHPDLLIERPMPGQ-NPANFRNKFSKLFDASVPSIPESKSLTPEEKERFSRLWPAGEAAA 360
Query: 194 AKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
L ++KI Y RN+P++N T +S+H GT++ R +++ + I K D
Sbjct: 361 IDRLERFLVEKIVKYKDTRNFPALNSTGRVSVHHAAGTLAARTSIRMA-RDINSAQKLDG 419
Query: 254 --IGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGY 310
G TW+ ++ WRDFY+ +L +P V +NK FK EY NI WE Y +F W +G
Sbjct: 420 GKDGVKTWIGEVAWRDFYRHVLVHWPYVCMNKPFKYEYTNIDWE---YNTAHFTAWTRGQ 476
Query: 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNG 370
TGYP++D+A+ LN +GYMHNRLRM+TASFL K++ ++W+ GE YF + L D D ASNNG
Sbjct: 477 TGYPIVDAAMRCLNHTGYMHNRLRMITASFLAKHLLLDWRLGEQYFLSHLIDGDFASNNG 536
Query: 371 NWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYK 430
W +SAS+G QP+FRIFNP IQS+KFD G FIR ++ +L + K +H+P+KA
Sbjct: 537 GWGFSASTGVDPQPYFRIFNPWIQSEKFDADGEFIRTWVEELKDVQGKDVHNPYKAGGRA 596
Query: 431 LEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+E A + YP+PI+EH++++ LKRY
Sbjct: 597 METARRM---GYPEPIVEHTVARARCLKRY 623
>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 479
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/467 (35%), Positives = 251/467 (53%), Gaps = 32/467 (6%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VF D NILD Q + R+ ++ + EL + S L+I S I
Sbjct: 30 QVVGVFCLDPNILD----QDDVAPARVTYMIGCLQELQKQYEKVGSQLLILQGQPSSAIP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG-K 120
KL L AV N D EP A RD+ + + LK + + DQ++ +EI K+ +
Sbjct: 86 KLAKALEAKAVYWNLDVEPYAKDRDQQVSEALKEVNIGVETVWDQLLHTPDEIRTKSANE 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVH-SSKLHKII-NNNIISL---NDL 175
PY +++ Y W ++ K P+ ++ N + K KI N II L DL
Sbjct: 146 PYKVYTPYWNNWSKRKKQK-------PIHTFSENPTGLTEKQLKIAKENGIIDLPLAEDL 198
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISI 234
GF N L ++ G A+ L F + + Y+ RN+P+ +GTS LS L+FG ISI
Sbjct: 199 GFVWEN--ELILEPGEEAAQNRLEEFCDRALFEYDEQRNFPANDGTSQLSAALKFGVISI 256
Query: 235 RKLVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
R + + ++ + W +L WR+FYQ +Y +P + N ++ + + W
Sbjct: 257 RTVWAKTVEAMENTRSDEARNNIKAWQQELAWREFYQQAMYHFPELANGPYRDHFKDFPW 316
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
S+N +++F WC+G TGYP++D+A+ QLN G+MHNR RM+ A+FL K++ INW+WGE
Sbjct: 317 -SEN--QEHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVANFLTKDLMINWQWGE 373
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YF KL D DL++NNG WQWSASSG +P RIFNP Q++K+D +G +IR++LP+LS
Sbjct: 374 KYFMQKLMDGDLSANNGGWQWSASSGMDPKP-LRIFNPTTQAQKYDPEGEYIRQWLPELS 432
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
L +Y+ + K SS E +YP+PI++H ++ Y
Sbjct: 433 SLDTEYLVTG-KISSKDREAC------DYPEPIVDHKQQQQQFKSLY 472
>gi|149377119|ref|ZP_01894869.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
gi|149358655|gb|EDM47127.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
Length = 466
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/448 (35%), Positives = 242/448 (54%), Gaps = 39/448 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
R++F+ LS L L +A + ++++K + +I V N +Y
Sbjct: 49 RVQFVLDHANALSEELAKLGISLSFITATTFADSVEKLEKFCRRESIRHVHFNEEYGVNE 108
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RDK +K L IG Y+DQ + IL + G+PYS+F+ + ++W + +
Sbjct: 109 RRRDKAVKHALDEIGVAVNKYRDQTVAPVGNILTQQGEPYSVFTPFSRRWRSWIDEAQPT 168
Query: 143 LQSYPVKSYLNNLV---HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLN 199
L +P+ + + V H L K +N L ++TG A L
Sbjct: 169 L--FPIPKPVGDTVEPPHYEGLSKSFDNPPPRL--------------VETGEDAAHRQLE 212
Query: 200 NFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F+ +Y R+ PS++GTS LS +L G +S ++ LI + + G T
Sbjct: 213 QFLDDHAGDYKNLRDLPSVDGTSLLSPYLANGVLSGKQC--LIAARQNQGMGGNQEGLVT 270
Query: 259 WLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W +++ WRDFY ILY YP + ++++FK E + + W N +NF W G TG P++D
Sbjct: 271 WTNEIAWRDFYINILYHYPRISMHRAFKPETEALKW---NTPGENFEAWKAGNTGIPIVD 327
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QLN +G+MHNRLRM+TA FL KN+ I+W+ GE YF +KL D LASNNG WQWSAS
Sbjct: 328 AAMRQLNQTGWMHNRLRMITAMFLTKNLFIDWRLGEAYFMSKLVDGFLASNNGGWQWSAS 387
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G + P+FR+FNP QS++FD G FIRKY+P+++KL NK IH PW G+I
Sbjct: 388 TGTDAAPYFRVFNPATQSERFDPDGEFIRKYVPEIAKLDNKRIHQPW--------VGGVI 439
Query: 438 LGKNYPKPILEHSLSKKNILKRYNFIKN 465
G YP+P+++ S+K + ++ +KN
Sbjct: 440 PG-GYPRPVVDLKESRKEAIAKFQALKN 466
>gi|398882406|ref|ZP_10637374.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM60]
gi|398198948|gb|EJM85898.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM60]
Length = 481
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/452 (34%), Positives = 255/452 (56%), Gaps = 32/452 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+++F +++ ELS L + L+IR A E K+++ +L IDAV +N +Y
Sbjct: 47 KVDFWLRNLRELSRALGELNIPLLIRTASRWDEAPKVLLDLCQQLKIDAVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKV-KSNKC 141
RD + + LK IG F+SY DQ++F +L KTG + +FS ++K +++ +S
Sbjct: 107 SRRDAAVAEALKTIGVDFYSYLDQLLFSPGTVLTKTGTYFQVFSQFRKVCYDRLHRSLPS 166
Query: 142 YLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNN 200
+++ ++S LN I+++ I + GF + + + G + A+ L+
Sbjct: 167 LVRAPALQSKLN-----------IDSDEIPSSVAGFDTPSDTLRALWPAGEAEARRRLDT 215
Query: 201 FI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F +I Y R++P+ GTS LS +L G IS R+ + + + +++ +G TW
Sbjct: 216 FADAQIDYYKSERDFPAKPGTSQLSAYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTW 275
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+++L+WR+FY+ IL YP V +++F+ E + + W A W + TG P+ID+
Sbjct: 276 INELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APDELAAWQEARTGLPIIDA 332
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+
Sbjct: 333 AMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSST 392
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G S P+FRIFNP+ QS+KFD +G+FI+ +LP+L+ L+ K +H+P G+
Sbjct: 393 GTDSAPYFRIFNPLSQSEKFDSEGLFIKHWLPELAGLNKKDVHNP-------ANLGGLFG 445
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
YP PI+ S S+ L + KN+ +R
Sbjct: 446 VAGYPSPIVNLSTSRTRALTAF---KNLPSRQ 474
>gi|452207964|ref|YP_007488086.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
gi|452084064|emb|CCQ37397.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
Length = 466
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/461 (31%), Positives = 241/461 (52%), Gaps = 26/461 (5%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF+FD+ +L+ + R+ F+ ++ L + S+L++R + + L
Sbjct: 28 VFVFDEAVLEHAGAS------RVAFLLDAVGALRAAYRERGSELLVRAGDPASVVPNLAA 81
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L + V N DY A RD+ + L+ + + D V E I G PYS+F
Sbjct: 82 DLGAEFVSWNRDYSGLASERDERVDDALENVDATPQKFHDAVCHEPGSITTNAGDPYSVF 141
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+++ +KW ++ K + + + L + I +L+DLGF ++
Sbjct: 142 TYFGRKWRDREKDDPRRIPETAPAADLG----------VAPGAIPTLSDLGFDAP--AAE 189
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
G A+ LL +F+ + Y +R+YP+ TS LS+HL+FGTI IR++ K +
Sbjct: 190 VPAAGTDVARTLLESFLDDDVYRYEESRDYPAEECTSRLSVHLKFGTIGIREVDKRVRDA 249
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFL 304
++ + SQL WR+FY +LY P+VV ++ + I WE+D+
Sbjct: 250 LESASGERRESVAEFRSQLAWREFYTHVLYFNPDVVTTNYTSYENPIEWENDD---DLLA 306
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W +G TGYP++D+ + QL + G+MHNR+RM+ ASFL K++ I+W+ G +F + L D D
Sbjct: 307 AWKRGETGYPIVDAGMRQLRAEGFMHNRVRMIVASFLTKDLLIDWRHGYEHFRDLLVDHD 366
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
A++NG WQW+AS+G SQP+FRIFNP+ Q +++D +IR+Y+P+L + +HS W
Sbjct: 367 TANDNGGWQWAASTGTDSQPYFRIFNPMTQGERYDPDAAYIREYVPELEGVDPDVVHS-W 425
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ E+A YP+P++EHS ++ L + +
Sbjct: 426 HELT-PTERANA--APEYPEPVVEHSERREQALSMFERARG 463
>gi|83644572|ref|YP_433007.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
gi|83632615|gb|ABC28582.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
Length = 481
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/452 (33%), Positives = 251/452 (55%), Gaps = 37/452 (8%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLII----RYAIASKEIKKLVIKLNIDAVMINHDY 78
+ D +++F+ +++ L L + L I R+ A ++ L+ + A+ N ++
Sbjct: 50 MADIKLDFMLRNLKALQAELAKLNIPLFILDAPRFDEAPTKLLTLMQQHQCSALTFNEEF 109
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
RDK +K+ L G + ++DQ I I G PY++F+ Y++ W +
Sbjct: 110 GVNERRRDKAVKETLNAEGLEALKFRDQSILPAGSIRTGQGTPYAVFTPYKRAWFSQCPE 169
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+++ +P + + + + + + + GF K +SS G A L
Sbjct: 170 ---HIELWPEPAKQPSPMQTPE-------GDVPESVSGFDK--VSSQTYAAGEDAALQKL 217
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD---CI 254
++F++ K+ Y+ R++P+I+G S LS +L G +S R+ F ++H
Sbjct: 218 DDFLEHKVDRYHEQRDFPAIDGVSQLSPYLALGVLSGRQ----CFHAAQRHRHASPNASE 273
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
G TW+++LIWRDFY ILY +P + + K+FK+E +N+ W +++K+FL WC+G TG
Sbjct: 274 GVDTWINELIWRDFYIHILYDFPRISMTKAFKQETENLQW---RHSEKDFLAWCEGKTGI 330
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
P++D+A+ QLN +G+MHNRLRM+ A FL KN+ ++W+ GE YF KL D LA+NNG WQ
Sbjct: 331 PIVDAAMRQLNQTGWMHNRLRMICAMFLSKNLLLDWRLGERYFMCKLIDGHLAANNGGWQ 390
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEK 433
WSAS+G + P+FR+FNP+ QS++FD G FIR Y P+L++LS K IH P +L
Sbjct: 391 WSASTGVDAAPYFRMFNPVAQSERFDPNGDFIRHYAPELAELSAKLIHQPPSDVRSRL-- 448
Query: 434 AGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
YP PI++ S++ L+ + +KN
Sbjct: 449 -------GYPVPIVDLKASRERALQAFRELKN 473
>gi|425438323|ref|ZP_18818728.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440755927|ref|ZP_20935128.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
gi|389676549|emb|CCH94466.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440173149|gb|ELP52607.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
Length = 474
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/458 (34%), Positives = 254/458 (55%), Gaps = 25/458 (5%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ I R+ ++ + EL N + S L+I S+ + L
Sbjct: 34 VFCLDPAILE----GDDIAPARVAYLLGCLEELEKNYRQKGSQLVIIRGNPSQTLVNLAG 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEVETFWDQLLQAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K+ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKARPKTLEN--LQGLDEN--EGEKLTETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A L F + I NY +RN+P+ +GTS LS L+FG I IR + +
Sbjct: 202 PLTPGEKAADSRLEEFCQGVINNYQEDRNFPAFDGTSRLSAALKFGAIGIRTIWTATLEL 261
Query: 245 IKKHYKTDCI-GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNF 303
++ + TW +L WR+FYQ LY +P + +++KE+ + W+ DN +++F
Sbjct: 262 LENCRAEEAKNSIITWQQELAWREFYQHCLYFFPELAVGAYRKEFRHFPWQ-DN--EEHF 318
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL D
Sbjct: 319 QAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDG 378
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+ +
Sbjct: 379 DLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEYIRQWLPELASVDTEYLVTG 437
Query: 424 WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
K + + G YP+PI++H+ +K + Y+
Sbjct: 438 -KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|375111825|ref|ZP_09758019.1| deoxyribodipyrimidine photolyase [Alishewanella jeotgali KCTC
22429]
gi|374568078|gb|EHR39267.1| deoxyribodipyrimidine photolyase [Alishewanella jeotgali KCTC
22429]
Length = 480
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 259/461 (56%), Gaps = 39/461 (8%)
Query: 9 FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLN 68
++ + + PLR Q ++ RR++ + + L+I L + YA + I L + L
Sbjct: 47 WNAHQMAPLR-QDLLR-RRVQAMQTELATLNIPLLAVEGS---DYASCAPLIAAL-LPLG 100
Query: 69 IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFY 128
+ A+ +YE + RD+ + L G + + I + G+ Y +F+ +
Sbjct: 101 VKALYAQVEYELREQRRDQQVSALLAQQGVAAHWFDRLCVMPPGSIRTQQGEIYKVFTPF 160
Query: 129 QKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK 188
++ W++++ S+ +Q YP + + +++SL L ++ S G
Sbjct: 161 KRNWLQRLASDG--IQCYPKPT-------------LQMEHVMSLPALAPMQAPDQSSG-D 204
Query: 189 TGASGAKIL--LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
S A+IL + NF + ++ Y R++P+I GTS LS +L G IS ++ V +
Sbjct: 205 WPVSEAEILTRMRNFCQQRVSAYQQERDFPAIAGTSQLSPYLAIGVISAQQCVARLQLEA 264
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFL 304
K+ + G WLS+LIWRDFY+ IL +P+++ +++F+ E D I W ++ + F
Sbjct: 265 KEAMWQEKSGAAVWLSELIWRDFYKHILVAFPHLIKHRAFQAETDLIQWPNE---QARFT 321
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
WC G TGYP++D+A+ QLN +G+MHNRLRM+TASFL+K++ I+W+WGE YF +KL D D
Sbjct: 322 AWCHGETGYPIVDAAMRQLNQTGWMHNRLRMITASFLVKDLHIDWRWGEQYFMSKLLDGD 381
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
A+NNG WQW+AS+G + P+FRIFNP+ QS++FD G FIR+++P+LS + K +H P
Sbjct: 382 FAANNGGWQWAASTGTDAAPYFRIFNPVTQSERFDPSGDFIRQFVPELSAKTGKDLHWPH 441
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ K Y KPI++H+ ++K L + +K
Sbjct: 442 R----------LVTPKGYVKPIVDHNEARKQTLALFAAVKG 472
>gi|427705816|ref|YP_007048193.1| deoxyribodipyrimidine photo-lyase type I [Nostoc sp. PCC 7107]
gi|427358321|gb|AFY41043.1| deoxyribodipyrimidine photo-lyase type I [Nostoc sp. PCC 7107]
Length = 479
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/455 (35%), Positives = 241/455 (52%), Gaps = 33/455 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D+NIL+ + I R+ ++ + L S L+I +A A + I
Sbjct: 31 VVGVFCLDRNILE----RDDIAPVRVTYMIGCLQALQERYAQIGSQLLILHADAMEVIPA 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L LN AV N D EP + IRD+ I LK G +F S DQ + EI + P
Sbjct: 87 LAEALNAKAVFWNWDVEPYSQIRDRNIIDALKAKGIQFLSENWDQTLHSPAEIRTGSNTP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN-----IISLNDLG 176
Y++++ + K W K K+ P + L + + + I N + + DLG
Sbjct: 147 YTVYTPFWKNWTSKPKA--------PPVATLQTVEGLTPAEQEIAQNAGAIPLPTAKDLG 198
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
F S L + G + A+ L F K I Y RN+P+ +GTS LS L+FG I IR
Sbjct: 199 FIWD--SDLILSPGEASAQARLAEFTYKTITEYQEQRNFPATDGTSQLSAALKFGAIGIR 256
Query: 236 KLVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
+ + + + TW +L WR+FYQ +Y +P + +++ + N WE
Sbjct: 257 TVWQATVAAQENSRSEETTTSIRTWQQELAWREFYQHAMYSFPELAEGAYRDAFKNFPWE 316
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
+++ +F WC+G TGYP++D+A+ QLN SG+MHNR RM+ ASFL K++ I+ + GE
Sbjct: 317 TND---AHFQAWCEGKTGYPIVDAAMRQLNQSGWMHNRCRMIVASFLTKDLLISPQLGEK 373
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF KL D DL++NNG WQWSASSG +P RIFNP Q++KFD G +IR++LP+L
Sbjct: 374 YFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPDGEYIRRWLPELRS 432
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
+ N+Y+ + LE+ + +YP+PI++H
Sbjct: 433 IDNEYLVT---GKITPLERRAV----SYPEPIVDH 460
>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
Length = 474
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 161/460 (35%), Positives = 255/460 (55%), Gaps = 29/460 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D IL+ I R+ ++ + EL N S L+I S+ + L
Sbjct: 34 VFCLDPAILE----GDDIAPARVAYLLGCLEELEKNYHQKGSQLLIIRGNPSQTLVNLAG 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ AV N D EP A RD+ + L+ G + ++ DQ++ ++L + PY+++
Sbjct: 90 NLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEVETFWDQLLHAPGQVLTLSKSPYTVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ + K W + K++ L++ ++ N KL + IN + +L +LGF N L
Sbjct: 150 TPFWKNWSQLAKASPKTLEN--LQGLDEN--EGEKLTETIN--LPTLENLGFTWQN--PL 201
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G A L F + I NY +RN+P+ +GTS LS L+FG I IR + +
Sbjct: 202 PLTPGEKAAHSRLEEFCQGVINNYQEDRNFPAFDGTSRLSAALKFGAIGIRTIWTATLEL 261
Query: 245 IK---KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
++ D I TW +L WR+FYQ LY +P + +++KE+ + W+ DN ++
Sbjct: 262 LENCCAQEAKDSI--ITWQQELAWREFYQHCLYFFPELAVGAYRKEFRHFPWQ-DN--EE 316
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
+F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+ GE YF KL
Sbjct: 317 HFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLF 376
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L+ + +Y+
Sbjct: 377 DGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEYIRQWLPELASVDTEYLV 435
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ K + + G YP+PI++H+ +K + Y+
Sbjct: 436 TG-KIPRLERHRCG------YPEPIVDHNQQQKEFKRLYS 468
>gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
Length = 479
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 161/471 (34%), Positives = 250/471 (53%), Gaps = 31/471 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D NIL+ + + R+ ++ S+ EL S L+I + I
Sbjct: 31 VVGVFCLDPNILE----RDDVAPVRVTYMIGSLQELQQRYVQAGSQLLILRGDPVQAIPH 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L LN AV N D EP + RD+ I LK G + ++ DQ++ +EI + + P
Sbjct: 87 LAEALNAKAVFWNWDVEPYSQTRDRAIIATLKDKGIQCLTHNWDQILHSPDEIRSGSNTP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLN--NLVHSSK--LHKIINNNIISLNDLGF 177
Y++++ + K W K K+ PV++ N L + + K + + DLGF
Sbjct: 147 YTVYTPFWKNWSSKPKAK-------PVETLHNVEGLTEAEQELAQKAGVKALPTAKDLGF 199
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
+ L I G + A+ L F K I Y RN+P +NGTS LS L+FG I IR
Sbjct: 200 FWD--ADLIIAPGEAAAQAKLAEFTAKAITEYQEQRNFPGVNGTSQLSAALKFGVIGIRT 257
Query: 237 LVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + ++ + TW +L WR+FYQ +Y +P + + +++ + N WE+
Sbjct: 258 VWQTTLEALENSRSEETTTSIRTWQQELAWREFYQHAMYNFPELADGAYRATFKNFPWET 317
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ +++F WC+G TGYP++D+A+ Q+N SG+MHNR RM+ ASFL K++ IN +WGE Y
Sbjct: 318 N---EEHFQAWCEGKTGYPIVDAAMRQMNESGWMHNRCRMIVASFLTKDLLINPQWGEKY 374
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F KL D DL++NNG WQWSASSG +P RIFNP QS+KFD +IR+++P+L +
Sbjct: 375 FMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDPDAEYIRQWVPELRSM 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+Y+ + LE+ + Y KPI++H ++ +RY K I
Sbjct: 434 DTEYLVT---GKITPLERHAV----GYVKPIVDHQKQQQLFKQRYQQQKAI 477
>gi|378952815|ref|YP_005210303.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens F113]
gi|359762829|gb|AEV64908.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens F113]
Length = 483
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/451 (33%), Positives = 247/451 (54%), Gaps = 30/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+F +++ LS+ L + L+IR A A + KL +LNI AV IN +Y
Sbjct: 47 KIDFWLRNLGALSVALDELNIPLLIRDAAHWQQAPHVLLKLCRELNIGAVHINEEYGLNE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + L G +F S+ DQ++F+ +L KTG + +FS ++K ++ +
Sbjct: 107 TRRDAEAARALNDQGIEFHSHLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPS 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
L + PV+ I + + GF + + + G + A+ L+ F
Sbjct: 167 LAATPVRQAPTG----------ITRDPVPTQVDGFAPPSEALRALWPAGETEARRRLDTF 216
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + I +Y R++P+ GTS LS +L G +S R+ + + + +++ G TW+
Sbjct: 217 VDQHIDDYQGERDFPAKPGTSQLSAYLVAGVVSPRQCLHAALQANQGEFESGSAGVVTWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W A W + TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRAFRPETEALAWRK---APAELEAWKQARTGLPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 334 MRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMQHLIDGDLAANNGGWQWSASTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS+KFD +G+FI+++LP+L+ L + +HSP + G+
Sbjct: 394 TDSAPWFRIFNPLSQSEKFDREGLFIKRWLPELNDLDRQQVHSP-------NTQGGLFGA 446
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
NYP PI++ S S+ L + +N+ R
Sbjct: 447 VNYPAPIVDLSQSRARALAAF---RNLPTRQ 474
>gi|417860350|ref|ZP_12505406.1| DNA photolyase [Agrobacterium tumefaciens F2]
gi|338823414|gb|EGP57382.1| DNA photolyase [Agrobacterium tumefaciens F2]
Length = 479
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/450 (32%), Positives = 250/450 (55%), Gaps = 16/450 (3%)
Query: 18 RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHD 77
+S G + + ++ S+ L++ L+ S L++R A + ++ ++ + D + N
Sbjct: 42 KSSGPLGGAQEWWLHHSLASLTVALEETGSRLLLRSGDAEETLRHVISETGADTIFWNRR 101
Query: 78 YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
Y+P + DK +K+ L G S+ ++ E + + K+G PY +++ + W
Sbjct: 102 YDPAGMATDKALKQALSDDGLTVRSFAGHLLHEPSRVQTKSGGPYRVYTPF---WRALEG 158
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN-DLGFCKSNLSSLGIKTGASGAKI 196
+ + + KS L + K K+ + ++ + D S + + G + A+
Sbjct: 159 GEEPHAPADAPKS-LKSPETWPKSQKLDDWKLLPVKPDWARDFSEIWT----PGENAARE 213
Query: 197 LLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIG 255
L++FI +K Y R++P+ + TS L+ HL G IS V K + +H ++ I
Sbjct: 214 KLDDFIDGALKGYEEGRDFPAKDATSMLAPHLALGEISP-AAVWHATKGLSRHIASNDIS 272
Query: 256 YFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
F +L+WR+F +L+ +P + K++ + +D W D +K+F W +G TGYP+
Sbjct: 273 RFR--KELVWREFCYHLLFHFPKLDEKNWNESFDAFGWRQD---EKSFKAWTRGMTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL G MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D ASN NWQW
Sbjct: 328 VDAGMRQLWKHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWV 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
A SG + PFFRIFNPI+Q +KFD G ++R+++P+L KL K+IH P++A L KAG
Sbjct: 388 AGSGADASPFFRIFNPILQGEKFDGDGDYVRRFVPELEKLDRKFIHKPFQAPRELLNKAG 447
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
I LGK YP+PI++H+ +++ L Y +KN
Sbjct: 448 IELGKTYPQPIVDHTKARERALAAYAAVKN 477
>gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
Length = 490
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/454 (31%), Positives = 240/454 (52%), Gaps = 32/454 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V V+I D+ +R G + ++ KS+ L+ +L + LI+R + E+++
Sbjct: 38 VVPVYIHDEGTA--VRPAGAAS---LWWLDKSLRALAGSLAERGATLILRRGDSETELRR 92
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + D V +N +EP+A RD I LK G + ++ +LN +G PY
Sbjct: 93 LIDQTGADTVFLNRLFEPEAWTRDADIAHGLKTDGVECRGSNGSLLALPGSLLNGSGGPY 152
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL---GFCK 179
+F+ + K +++ H++ ++ + +DL G
Sbjct: 153 KVFTPFMKA----------------LRAQAEPPAHTTGPRQLGAAPGLESDDLDAWGLHP 196
Query: 180 SNLS---SLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
+ G GA L+ F+ + +Y+ R+ P+ TS LS HL FG IS
Sbjct: 197 TRPDWSKGFDWTPGEDGATAALHRFVSGGLADYSNGRDRPAEPATSRLSPHLHFGEISPW 256
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + K ++++LIWRDF +L+ +P + +K+F+ EYD + W
Sbjct: 257 R-AWIAARDAADGGKVTSGEADKFIAELIWRDFSAHLLHHFPTLPDKAFRPEYDAMPWRD 315
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
D + FL W +G TGYP++D+ + +L ++G MHNR+RM+ ASFLIK++ I+W+ GE +
Sbjct: 316 D---EPGFLAWTRGMTGYPIVDAGMRELWATGVMHNRVRMIVASFLIKDLLIDWRRGEAW 372
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F + L D DLASN+ NWQW A SG + P+FRIFNP+ Q +KFD + ++++++P+L+ +
Sbjct: 373 FWDTLVDADLASNSQNWQWVAGSGADASPYFRIFNPVTQGQKFDAEARYVKRWIPELAPV 432
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
++IH+PW A L GI LG YP+PI++H
Sbjct: 433 PARWIHAPWNAPPEILRDCGIRLGTTYPRPIVDH 466
>gi|126665160|ref|ZP_01736143.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
gi|126630530|gb|EBA01145.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
Length = 488
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 229/407 (56%), Gaps = 28/407 (6%)
Query: 69 IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFY 128
I V N +Y RDK +K +G K Y+DQ E+L + +PYS+F+ +
Sbjct: 100 ISQVHFNEEYGVNERRRDKALKPRFDTLGVKVSKYRDQAAVPVGEVLTQQSEPYSVFTPF 159
Query: 129 QKKWIEKVKSNKCYLQSYP--VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG 186
++W + + L + P V L + I+ + +L G L
Sbjct: 160 SRRWRSWQEEQQPALLAVPKKVGEALAGADVKNSSSVILKKEVDAL--FGEAPPAL---- 213
Query: 187 IKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
+ TG + A L +F++ + +Y +R++P+I GTS LS +L G +S R+ V+ ++
Sbjct: 214 VATGENAAHDALQDFLQERAGDYKNDRDFPAIEGTSKLSPYLAIGALSGRQCVQAAWQLK 273
Query: 246 KKHYKT------DCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNY 298
+ + D G+FTW ++L WRDFY ILY P V ++++FK E + + W N
Sbjct: 274 QSMGSSFGKAANDEEGFFTWETELAWRDFYIHILYHCPRVSMHRAFKPETEALQW---NT 330
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
A ++F W G TG P++D+A+ QLN + +MHNRLRMV A FL KN+ I+W+ GE YF +
Sbjct: 331 ADEHFEAWKNGRTGIPMVDAAMRQLNETSWMHNRLRMVAAMFLTKNLFIDWRRGEAYFMS 390
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
KL D LASNNG WQWSAS+G + P+FR+FNP+ Q ++FD G FIR ++P+L+KL +K
Sbjct: 391 KLADGYLASNNGGWQWSASTGTDASPYFRVFNPMTQGERFDADGEFIRHWVPELAKLDSK 450
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH+P K G+I G YP+PI++ S+K + R+ +++
Sbjct: 451 RIHNP--------GKGGVIPG-GYPRPIVDLKESRKEAIARFQALRD 488
>gi|398889396|ref|ZP_10643239.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM55]
gi|398189518|gb|EJM76792.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM55]
Length = 485
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 156/452 (34%), Positives = 255/452 (56%), Gaps = 32/452 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
+++F +++ ELS L + L++R+A ++ +++ L IDAV +N +Y
Sbjct: 47 KVDFWLRNLRELSRELGQLNIPLLVRWAPRWEDAPAVLLDLCRQWQIDAVYLNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L G K Y DQ++F+ +L +TG + +FS ++K E++ +
Sbjct: 107 TRRDAAVARTLGAEGIKVHRYLDQLLFKPGSVLTRTGTCFQVFSQFRKVCYERLHHSLPG 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC--KSNLSSLGIKTGASGAKILLNN 200
L P K N I ++ + + GF NL L G + A+ LN+
Sbjct: 167 LVRAPRKQAPLN----------IASDAVPTSIEGFATPADNLRQL-WPAGETEARRRLNS 215
Query: 201 FI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F +I +Y R++P+ GTS LS +L G IS R+ + + +++ G TW
Sbjct: 216 FTDAQIDHYQNERDFPAKPGTSQLSAYLAAGVISPRQCLHAALNNNQGEFESGKTGAVTW 275
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+++L+WR+FY+ IL YP V +++F+ E + + W + A + W +G TG P+ID+
Sbjct: 276 INELLWREFYKHILVGYPRVSRHRAFRPETEALAWRN---APEELAAWQQGRTGLPIIDA 332
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+
Sbjct: 333 AMRQLLATGWMHNRLRMVVAMFLTKNLLIDWREGERFFMQHLIDGDLAANNGGWQWSSST 392
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G S P+FRIFNP+ QS+KFD +G+FI+ +LP+L+ LS K +H+P +S+ G+
Sbjct: 393 GTDSAPYFRIFNPLSQSEKFDPEGLFIKHWLPELAGLSKKDVHNP---ASF----GGLFG 445
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP PI++ S S+ L + KN+ +R
Sbjct: 446 VVDYPSPIVDLSASRTRALTAF---KNLPSRQ 474
>gi|427730047|ref|YP_007076284.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Nostoc sp. PCC 7524]
gi|427365966|gb|AFY48687.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Nostoc sp. PCC 7524]
Length = 479
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 157/472 (33%), Positives = 247/472 (52%), Gaps = 41/472 (8%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VF D NIL+ + + R+ ++ + L S L+I + + I
Sbjct: 30 QVVGVFCLDSNILE----RDDVAPARVTYMMGCLQALQQRYAQAGSQLLILHGEPVQAIP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGK 120
L L AV N D EP + IRD+ I + LK G +F + DQ++ EI + +
Sbjct: 86 HLAETLQAKAVFWNWDVEPYSQIRDRAIMESLKAKGIEFLTQNWDQILHAPEEIRSGSNT 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN----IISLNDLG 176
PY++++ + K WI K K+ PV + N + K ++ + + +LG
Sbjct: 146 PYTVYTPFWKNWISKPKAQ-------PVATLENTAGLTEKQQELAKQAGAIALPTAKELG 198
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
F + L I G + A+ L F K I Y RN+P+++GTS LS L+FG I IR
Sbjct: 199 FVWD--TDLIISPGEAAAQEKLEEFTAKAITEYQEQRNFPAVDGTSQLSAALKFGVIGIR 256
Query: 236 KLVKLIFKFIKKHYKTDC------IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYD 289
+ + ++ DC TW +L WR+FYQ +Y +P + +++ +
Sbjct: 257 TVWQATTAVLE-----DCNSEEVTTSIRTWQQELAWREFYQHAMYHFPELAEGAYRDIFK 311
Query: 290 NILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINW 349
+ WE++ +++FL WC+G TGYP++D+A+ Q+N G+MHNR RM+ ASFL K++ IN
Sbjct: 312 SFPWENN---EEHFLAWCEGKTGYPIVDAAMRQMNEIGWMHNRCRMIVASFLTKDLLINP 368
Query: 350 KWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYL 409
+WGE YF KL D DL++NNG WQWSASSG +P RIFNP Q++KFD +IR++L
Sbjct: 369 QWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-VRIFNPASQAQKFDPDAEYIRQWL 427
Query: 410 PQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
P+L + +Y+ + LE+ + YP PI++H ++ RY
Sbjct: 428 PELRSIDTEYLVT---GKITPLERRAV----GYPDPIVDHKKQQQQFKLRYQ 472
>gi|330916654|ref|XP_003297506.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1]
gi|311329779|gb|EFQ94400.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1]
Length = 632
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/450 (34%), Positives = 242/450 (53%), Gaps = 19/450 (4%)
Query: 22 IIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHD 77
++ + +F +S+ L L D L I K + K +++L N+ V N +
Sbjct: 182 LVSPPKCDFELRSVELLQKELSELDIPLYIETIPERKNVTKRLVELAQEWNVKNVFCNLE 241
Query: 78 YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
YEP + R++ + + + G F Y D + + GK Y+++S + + WI +
Sbjct: 242 YEPDELRREERLVRMMLEKGIGFDPYHDDCVVPPGSLKTGAGKQYAVYSPWCRAWIAHLH 301
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC----KSNLSSLGIKTGASG 193
++ L P+ N K K+ ++ SL + K S L A+
Sbjct: 302 AHPDLLIERPMPGR-NPTNFRDKFSKLFEFSVPSLPECKALTPEEKERFSRLWPAGEAAA 360
Query: 194 AKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
L ++KI Y RN+P++N T +S+H GT++ R +++ + I K D
Sbjct: 361 VDRLERFLVEKIVKYKDTRNFPALNSTGRVSVHHAAGTLAARTSIRMA-RDINSAQKLDG 419
Query: 254 --IGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGY 310
G TW+ ++ WRDFY+ +L +P V +NK FK EY NI WE Y +F W +G
Sbjct: 420 GKDGVKTWIGEVAWRDFYRHVLVNWPYVCMNKPFKYEYTNIHWE---YNTAHFTAWTRGL 476
Query: 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNG 370
TGYP++D+A+ LN +GYMHNRLRM+TASFL K++ ++W+ GE YF L D D ASNNG
Sbjct: 477 TGYPIVDAAMRCLNHTGYMHNRLRMITASFLSKHLLLDWRLGEQYFLTHLIDGDFASNNG 536
Query: 371 NWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYK 430
W +SAS+G QP+FRIFNP IQS+KFD G FIR ++ +LS + K +H+P+ A
Sbjct: 537 GWGFSASTGVDPQPYFRIFNPWIQSEKFDADGEFIRMWVEELSGVQGKEVHNPYAAGGKA 596
Query: 431 LEKAGIILGKNYPKPILEHSLSKKNILKRY 460
E A + YP+P++EH ++++ LKRY
Sbjct: 597 AEVARRM---GYPEPVVEHRVARERCLKRY 623
>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
Length = 481
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 165/478 (34%), Positives = 259/478 (54%), Gaps = 38/478 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F FD NIL+ + I RI ++ + EL Q S+L+ S I +
Sbjct: 31 VVGIFCFDSNILE----RDDIAPARIAYLLGCLQELQQTYQKLGSNLLFIQGEPSHIIPQ 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L+ +AV N D EP + RD+ + + LK G K +Y DQ++ EI+ K+G+PY
Sbjct: 87 LAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQGIKTQTYWDQLLHYPGEIVTKSGEPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNL-------VHSSKLHKIINNNIISLNDL 175
+++ + K W + K + + + L NL + +K KII+ + ++ +L
Sbjct: 147 KVYTPFWKNWELQSKDS--------ITNNLENLEGLTQTELEQAKTVKIID--LPTVKEL 196
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
G+ L + G + A L+ F I Y RN+P+I GTS LS L+FG I I
Sbjct: 197 GYRWD--YPLILSPGETAAAERLDYFCDAAINEYQEQRNFPAIEGTSQLSPALKFGVIGI 254
Query: 235 RKLVKLIFKFIKKHYKTDCI--GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNIL 292
R + + K ++ + ++D + TW +L WR+FYQ LY +P + +++++ +
Sbjct: 255 RTVWQATLKAME-NSRSDEVRESIVTWQKELAWREFYQHCLYFFPELAEGPYREDFQDFP 313
Query: 293 WESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWG 352
W+++ F WC G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WG
Sbjct: 314 WDNNEVL---FQAWCDGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLMINWQWG 370
Query: 353 ENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQL 412
E YF L D DLA+NNG WQWSASSG +P RIFNP Q++KFD +IR++LP+L
Sbjct: 371 EKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPDADYIRQWLPEL 429
Query: 413 SKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
L + + + K S G YP+PI+ H+ ++ +RY+ +K + N
Sbjct: 430 RSLDTEVLVTG-KISPLDCLSCG------YPQPIVNHNQQQREFKRRYSQVKQTKSVN 480
>gi|126175256|ref|YP_001051405.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS155]
gi|386342009|ref|YP_006038375.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS117]
gi|125998461|gb|ABN62536.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella baltica OS155]
gi|334864410|gb|AEH14881.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS117]
Length = 505
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 217/371 (58%), Gaps = 20/371 (5%)
Query: 97 GCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLV 156
G + + + +LN +G Y +F+ + +KW E + +L PV + L ++
Sbjct: 147 GIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAIFL--LPVPAPLGPVL 204
Query: 157 HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYP 215
K H + NN+ + +SS G AK +L+ FI+ K+++Y +R++P
Sbjct: 205 TEPKPH--LFNNV----------TKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 252
Query: 216 SINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYC 275
+I+GTS +S +L G IS R+ V + + D TWL++L WR+FY+ +L
Sbjct: 253 AIDGTSSISPYLAIGVISPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVA 312
Query: 276 YPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLR 334
+P++ N +F ++ D++ W ++ + F WC+G TGYP++D+A+ QLN +G+MHNRLR
Sbjct: 313 FPDLSKNHNFNRQADHVQWRNN---PQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLR 369
Query: 335 MVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQ 394
MV ASFL K++ I+W+WGE YF KL D DLA+NNG WQWSA GC +QP+FRIFNP+ Q
Sbjct: 370 MVVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQ 429
Query: 395 SKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL-EKAGIILGKNYPKPILEHSLSK 453
S+KFD G FIRKYLP+L+ K +H P A + L E+ + YP I+EHS ++
Sbjct: 430 SEKFDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFEQPLFNIKTAYPSAIVEHSAAR 489
Query: 454 KNILKRYNFIK 464
L +K
Sbjct: 490 ARALTVLGVLK 500
>gi|333899133|ref|YP_004473006.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
gi|333114398|gb|AEF20912.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
Length = 483
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/443 (35%), Positives = 244/443 (55%), Gaps = 26/443 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F ++++ELS L+ + L+IR ++ A K I L +L AV +N +Y
Sbjct: 48 KVDFWLRNLVELSRELKRLNVPLLIREADQWSAAPKVIGTLAQELQASAVHVNEEYGVNE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + L +G F S+ D+++F+ +L +TG + ++S ++ CY
Sbjct: 108 SRRDEAVSAALDELGVNFHSHLDRLLFKPGSVLTRTGTYFKVYSQFR---------GVCY 158
Query: 143 LQSYPVKSYLNNLVHSSKLHKIIN--NNIISLNDLGF-CKSNLSSLGIKTGASGAKILLN 199
+ + + L LV K + + I GF S G A+ L
Sbjct: 159 QR---LHTALPKLVAPPKAQAKLEMAADPIPEQVAGFDTPSQALRDAWPAGEDAARERLQ 215
Query: 200 NFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F + I++Y+ NR++P GTS LS +L G +S R+ + ++ G T
Sbjct: 216 RFADEWIEDYHDNRDFPIRPGTSQLSAYLAAGVLSPRQCLHAALNANGGEFENGNQGAVT 275
Query: 259 WLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++LIWR+FY IL YP+V + ++F+ E + + W + A K+ W +G TG P+ID
Sbjct: 276 WINELIWREFYAHILVGYPHVSMARAFRPETEALPWRN---AAKDLQAWQEGRTGIPIID 332
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS
Sbjct: 333 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSAS 392
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIFNPI QS++FD G FIR++LP+L+ LS+K IH P S + G
Sbjct: 393 TGTDSVPYFRIFNPISQSQRFDPDGRFIRQWLPELASLSDKTIHDPHAGSKGQASLFGG- 451
Query: 438 LGKNYPKPILEHSLSKKNILKRY 460
G +YPKPI++ S++ L +
Sbjct: 452 -GVDYPKPIVDLRASRQRALDAF 473
>gi|398854298|ref|ZP_10610868.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM80]
gi|398236390|gb|EJN22175.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM80]
Length = 481
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 154/441 (34%), Positives = 249/441 (56%), Gaps = 27/441 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ ELS +L + L+IR A A E+ KL +L ++AV +N +Y
Sbjct: 47 KVDFWLRNLKELSQSLDALNIPLLIRTATHWDHAPAELLKLCRELQVEAVHVNEEYGVHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L+ G +F SY DQ++F+ +L KT + +FS ++K E++ +
Sbjct: 107 SRRDAAVAEILRAEGIEFHSYLDQLLFKPGTVLTKTDTYFKVFSQFRKVCYERLHRSMPA 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
L P K +KL I+++ I + GF + S + G A+ L+ F
Sbjct: 167 LVKAPGKQ--------AKLK--IDSDPIPDSVKGFATPSESLQALWPAGEKEARRRLDTF 216
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+I Y R++P+ GTS LS +L G IS R+ + + + +++ +G TW+
Sbjct: 217 ADAQIDYYKSERDFPAKPGTSQLSAYLAAGVISPRQCLHTALQSNQGEFESGKVGAVTWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W A + W + TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APEELAAWQEARTGLPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 334 MRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS+KFD +G+FI+ +LP+L+ L+ K IH+P G+
Sbjct: 394 TDSAPYFRIFNPLSQSEKFDSEGLFIKHWLPELAGLNKKQIHNP-------ASLGGLFGV 446
Query: 440 KNYPKPILEHSLSKKNILKRY 460
+YP PI+ S S++ L +
Sbjct: 447 ADYPSPIVNLSASRERALAAF 467
>gi|361130432|gb|EHL02245.1| putative Deoxyribodipyrimidine photo-lyase [Glarea lozoyensis
74030]
Length = 601
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 160/449 (35%), Positives = 237/449 (52%), Gaps = 28/449 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++FI +++ L +L D L + K I V++L + + N +YE
Sbjct: 157 RVDFILRNLQVLKEDLGKLDIPLHVETVEKRKAIPGRVLELLKEWDASHLFANTEYEVDE 216
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + L F D + E+ + TGK YS++S + + W+ V S+
Sbjct: 217 LRREAKLVHSLLDNDISFEVTPDTCVVSPGELSSGTGKQYSVYSPWYRAWVAYVHSHPDV 276
Query: 143 LQSY-------PV-KSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGA 194
L + PV + + + S+ + N I+ + K SL G A
Sbjct: 277 LDLFGPPSKNPPVARERFSQIFESTTIPSAPANKSITPEE----KKRFKSL-WPAGEHEA 331
Query: 195 KILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF-IKKHYKTD 252
L F ++IK Y NRN+PS TS LS H GT+S R + K
Sbjct: 332 HSRLQRFCTERIKAYADNRNFPSETATSSLSAHYAAGTLSARTAIHTARSHNTSKSLNAG 391
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
G TW+S++ WRDFY+ +L +P V +NK FK EY NI WE D+ NF WC G T
Sbjct: 392 IQGIQTWISEVAWRDFYKHVLAHWPYVCMNKPFKPEYTNINWEYDD---ANFTAWCTGQT 448
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
GYP++D+A+ QLN GYMHNR RM+TASFL K++ I+W+ GE YF L D D ASNNG
Sbjct: 449 GYPIVDAAMRQLNHMGYMHNRCRMITASFLAKHLLIDWRMGEKYFMEHLIDGDFASNNGG 508
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL 431
W +SAS+G QP+FRIFNP++QS+KFD G +IRK++P+L + K +H P++ + K
Sbjct: 509 WGFSASTGVDPQPYFRIFNPLLQSEKFDGAGTYIRKWVPELEGVEGKAVHDPYERGAGK- 567
Query: 432 EKAGIILGKNYPKPILEHSLSKKNILKRY 460
++ + YP+P++ H S++ L RY
Sbjct: 568 ----VVEKRGYPRPVVVHKESRERCLARY 592
>gi|440739060|ref|ZP_20918582.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens
BRIP34879]
gi|447915119|ref|YP_007395687.1| deoxyribodipyrimidine photolyase [Pseudomonas poae RE*1-1-14]
gi|440380432|gb|ELQ16999.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens
BRIP34879]
gi|445198982|gb|AGE24191.1| deoxyribodipyrimidine photolyase [Pseudomonas poae RE*1-1-14]
Length = 480
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 252/449 (56%), Gaps = 33/449 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ L L + L+IR A A + KL +L + +V +N +Y
Sbjct: 47 KVDFWLRNLQHLRQALGTLNIPLLIRTAPTWDQAPAVLSKLCQELAVASVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F SY DQ+ F+ +L KTG + +FS ++K CY
Sbjct: 107 SRRDQAVAQALEACGVTFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHK--IINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLN 199
+ + S L LV + K + ++++ I + GF + S + G A+ L+
Sbjct: 158 SR---LHSALPRLVATPKAQQKLPLDSDPIPSSVPGFEAPSDSLRALWPAGEDEARRRLD 214
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F ++I Y R+YP+ GTS LS +L G +S R+ + + ++T +G T
Sbjct: 215 TFADQQIGYYKDERDYPAKPGTSQLSAYLAAGVVSPRQCLHAALQSNSGEFETGNVGAVT 274
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++L+WR+FY+ IL YP V +++F+ E + + W +A K+ W + TG P+ID
Sbjct: 275 WINELLWREFYKHILVGYPRVSRHRAFRPETEAVAW---RHAPKDLAAWQEARTGLPIID 331
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S
Sbjct: 332 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS 391
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIF+P+ QS+KFD +G+FI+ +LPQL+ L+ K +H+P E AG +
Sbjct: 392 TGTDSAPYFRIFSPLSQSEKFDGEGVFIKHWLPQLAALNKKEVHNP--------EAAGGL 443
Query: 438 LG-KNYPKPILEHSLSKKNILKRYNFIKN 465
G +YP+ I++ S++ L + + +
Sbjct: 444 FGVADYPRSIVDLKKSRERALAAFRSLPS 472
>gi|407363810|ref|ZP_11110342.1| deoxyribodipyrimidine photolyase [Pseudomonas mandelii JR-1]
Length = 481
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 157/451 (34%), Positives = 255/451 (56%), Gaps = 30/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ ELS L + L+IR+A A + + KL +LN +AV +N +Y
Sbjct: 47 KVDFWLRNLGELSDALGELNIPLLIRHAPRWDEAPQVLLKLCQQLNAEAVHVNEEYGVHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + LK G FFSY DQ++F +L KTG + +FS ++K E++ +
Sbjct: 107 SRRDTAVAETLKAHGIDFFSYLDQLLFNPGTVLTKTGTYFQVFSQFRKVCYERLHRS--- 163
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
L K + + + I+++ I + GF + S + G + A+ L+ F
Sbjct: 164 LPGRVAKPAVQDPL-------PISSDDIPSSVKGFDMPSESLRQLWPAGEAEAQRRLDTF 216
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+I Y R++P+ GTS LS +L G IS R+ + + +++ +G TW+
Sbjct: 217 ADAQIDYYKSERDFPAKPGTSQLSAYLAAGVISPRQCLHAALHSNQGEFESGKVGAVTWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W A + L W + TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APEELLAWQQARTGLPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 334 MRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS+KFD +G+FI+ +LP+L+ L+ K +H+P G+
Sbjct: 394 TDSAPYFRIFNPLSQSEKFDAEGVFIKHWLPELAGLNKKDVHNP-------ANVGGLFGV 446
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP PI+ S S++ L + KN+ +R+
Sbjct: 447 ADYPSPIVNLSTSRQRALAAF---KNLPSRH 474
>gi|406908204|gb|EKD48781.1| hypothetical protein ACD_64C00134G0005 [uncultured bacterium]
Length = 465
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 153/438 (34%), Positives = 238/438 (54%), Gaps = 33/438 (7%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAII 84
D ++F+ +S+ +L ++ L + Y K I ++++ IDA+ +N DY P +
Sbjct: 55 DNALQFMLESLHDLEQQIKKQKGKLYLFYGDPLKTISHIILQEKIDALFLNFDYTPFSQK 114
Query: 85 RDKLIKKELKVIGCKFFSYKDQV-IFEKNEILNKTGKPYSIFS-FYQKKWIEKVKSNKCY 142
RDK I+K F Y D++ I + + I+ + PYSI++ FY+K +KV
Sbjct: 115 RDKAIEKLCVKKNVAFHGYHDELLIGDPDSIMTGSNTPYSIYTAFYKKAAHQKVSPP--- 171
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
Q P ++ + S+ I K + + + G S + +L
Sbjct: 172 -QRLPKGAFFTGTISKSEPQSIYKK---------ILKKENAHIKVHGGRSNSLTILKMLK 221
Query: 203 KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
K YN RNYP+++ T++LS +FGTISIR+ I K + H + L +
Sbjct: 222 SKQAAYNKERNYPALDATTHLSASHKFGTISIRESYHAIKKALGAHSQL--------LKE 273
Query: 263 LIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
L WRDF+ I Y P V + + ++Y + W N +F WC+G TG+P++D+ + Q
Sbjct: 274 LYWRDFFTYIAYHNPFVFGQPYHEKYKTLWWSKSN---TDFKKWCEGTTGFPIVDAGMRQ 330
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
+N++G+MHNR+RM+ ASFL K++ INW WGE YFA +L D+D A NNGNWQW+AS+GC +
Sbjct: 331 MNTTGWMHNRVRMIVASFLTKDLHINWLWGEKYFAQQLVDYDPAVNNGNWQWAASTGCDA 390
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNY 442
QP+FRIFNP Q KKFD +I+K++P+L K IH+ W S +++ G Y
Sbjct: 391 QPYFRIFNPWTQQKKFDPNCEYIKKWIPELKNREPKIIHA-WDKKSKEIKIEG------Y 443
Query: 443 PKPILEHSLSKKNILKRY 460
P PI++H +K LK Y
Sbjct: 444 PAPIIDHDAERKITLKSY 461
>gi|330811712|ref|YP_004356174.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|423699267|ref|ZP_17673757.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q8r1-96]
gi|327379820|gb|AEA71170.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|387996309|gb|EIK57639.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q8r1-96]
Length = 483
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 148/441 (33%), Positives = 243/441 (55%), Gaps = 27/441 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+F +++ LS L + L+IR A A + + KL +LN+ AV +N +Y
Sbjct: 47 KIDFWLRNLGALSATLAELNIPLLIRAAAHWHQAPQVLLKLCRELNVGAVHVNEEYGLNE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L G +F S+ DQ++F+ +L KTG + +FS ++K ++ +
Sbjct: 107 TRRDAEVARVLNDQGVEFHSHLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPS 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
L + P + L I + + GF + + + G + A+ L+ F
Sbjct: 167 LVATPARQALTG----------IARDPVPTQVDGFAPPSEALRALWPAGETEARRRLDTF 216
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + I +Y R+YP+ GTS LS +L G +S R+ + + + +++ G TW+
Sbjct: 217 VDQHIDDYQGERDYPARPGTSQLSAYLVAGVVSPRQCLHAALQANQGEFESGSAGAVTWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W A W + TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRAFRPETEALAWRK---APAELEAWKQARTGLPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 334 MRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMQHLIDGDLAANNGGWQWSASTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS+KFD +G+FI+++LP+L+ L + +HSP + G+
Sbjct: 394 TDSAPWFRIFNPLSQSEKFDREGLFIKRWLPELNDLDKQQVHSP-------NTQGGLFGA 446
Query: 440 KNYPKPILEHSLSKKNILKRY 460
+YP PI++ S+ L +
Sbjct: 447 VDYPAPIVDLRQSRARALAAF 467
>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
Length = 479
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 251/466 (53%), Gaps = 31/466 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D NIL+ + + R+ ++ S+ EL S L+I + + I
Sbjct: 31 VVGVFCLDPNILE----RDDVAPARVTYMIGSLQELQQRYVQAGSQLLILHGDPVQAIPH 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L LN AV N D EP + RD+ I LK G +F ++K DQ++ +EI + + P
Sbjct: 87 LAEALNAKAVFWNWDVEPYSQTRDRAILDILKDKGIQFLTHKWDQILHSPDEIRSGSNTP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLN--NLVHSSK--LHKIINNNIISLNDLGF 177
Y++++ + K W K K+ PV++ N L S + K + + DLGF
Sbjct: 147 YTVYTPFWKNWSSKPKAK-------PVETLQNAEGLTESEQELAQKAGVKTLPTAKDLGF 199
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
+ L I G + A+ L F K I Y RN+P+++GTS LS L+FG I IR
Sbjct: 200 FWD--ADLIIAPGEAAAQAKLEEFTAKAITEYQEQRNFPAVDGTSQLSAALKFGVIGIRT 257
Query: 237 LVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + ++ + TW +L WR+FYQ +Y +P + + ++++ + N WE+
Sbjct: 258 VWQATLEALENSRSEEASAAIRTWQQELAWREFYQHAMYNFPELADGAYRETFKNFPWET 317
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ +++F W +G TGYP++D+A+ Q+N SG+MHNR RM+ ASFL K++ IN + GE Y
Sbjct: 318 N---EEHFQAWREGKTGYPIVDAAMRQMNESGWMHNRCRMIVASFLTKDLLINPQLGEKY 374
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F KL D DL++NNG WQWSASSG +P RIFNP QS+KFD +IR+++P+L +
Sbjct: 375 FMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDPDAEYIRRWVPELRSM 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+Y+ + LE+ + Y KPI++H ++ +RY
Sbjct: 434 DTEYLVT---GKITPLERHAV----GYVKPIVDHQKQQQLFKQRYQ 472
>gi|423688023|ref|ZP_17662826.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri SR5]
gi|371492526|gb|EHN68132.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri SR5]
Length = 479
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 161/445 (36%), Positives = 250/445 (56%), Gaps = 28/445 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLII----RYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+ I + ++EL L+ + LI+ ++ +I +L +L+++A+ N +YE
Sbjct: 54 QIDLIKRRLVELKNELEQLNIPLIVISSPLFSEIPAKITELFSELSVNALFANKEYEHDE 113
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+RD + + L C FF K I I+N+T +PY +F+ ++K W K++
Sbjct: 114 RLRDTQVYESLLNTNCYFFDAK--CILPVGTIINRTQQPYKVFTPFKKAW----KASFYQ 167
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
Q + K+ + L + K+ NN S F SN S + + IL
Sbjct: 168 QQPHITKTGKSVLCDPKLIKKLSLNNDDSF---AFSSSNESESWPVSTKAIIDILRQFCR 224
Query: 203 KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
+K+ Y+ NR+YP I GTS LS +L G IS ++ + ++ +Y+ + G WL +
Sbjct: 225 QKVSQYHNNRDYPEIQGTSQLSPYLAIGAISAKQCALRLH--LEANYELN-QGEDIWLDE 281
Query: 263 LIWRDFYQMILYCYPNVVNKSFKKEYDN-ILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
LIWR+FY +L+ YPN+ YD I W+++ +F WCKG TG+P++D+A+
Sbjct: 282 LIWREFYTHLLHFYPNLSKNQAFLSYDKYIEWDNN---LDHFERWCKGETGFPIVDAAMK 338
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
QLN++G+MHNRLRM+TASFL+K++ I+W+WGE YF +KL D D ASNNG WQW AS GC
Sbjct: 339 QLNTTGWMHNRLRMITASFLVKDLHIDWRWGEQYFMSKLIDGDFASNNGGWQWCASVGCD 398
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
S P+FRIFNPI Q KKFD FI+ +LP+L L+NK IH P A ++ N
Sbjct: 399 SSPYFRIFNPITQGKKFDADCTFIKHWLPELKALNNKEIHHP--------NPAPLLKSDN 450
Query: 442 YPKPILEHSLSKKNILKRYNFIKNI 466
YP I++H+ + +++ Y K +
Sbjct: 451 YPDQIVDHAQQRIKVIEVYKQAKQL 475
>gi|388547190|ref|ZP_10150458.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. M47T1]
gi|388274765|gb|EIK94359.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. M47T1]
Length = 481
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/451 (34%), Positives = 247/451 (54%), Gaps = 30/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ +LS L L+IR + A ++KL + ++ AV N +Y
Sbjct: 47 KVDFWLRNVAQLSQALAENHIPLLIRTVDHWDQAPAALEKLCSEHSVTAVHCNAEYGVNE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L G F S+ DQ++F+ IL KTG + +FS ++K E++
Sbjct: 107 SRRDAAVAQALGDAGIAFESHLDQLLFQPGSILTKTGNYFQVFSQFRKVCYERLHHGIPA 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
+ P ++ I + I GF + + G AK L++F
Sbjct: 167 VVRAP----------RAQAPLAIAADTIPGKVPGFATPSPELQALWPAGEEEAKRRLDHF 216
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + I+ YN R+ PS GTS LS +L G IS R+ + + + + +G TW+
Sbjct: 217 VDEPIEYYNTERDIPSRPGTSQLSAYLAAGVISPRQCLHAALNENRGEFDSGNVGAVTWI 276
Query: 261 SQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++++F+ E + + W +A K W +G TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSMHRAFRSETEALAW---RHAPKELEAWQRGRTGIPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 334 MRQLLDTGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FRIFNP QS +FD G+F++++LP+L+ LS+K IH+P KA G+
Sbjct: 394 TDAAPYFRIFNPHNQSARFDEHGVFLKQWLPELADLSSKEIHNPAKAG-------GLFGP 446
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
YP+PI++ S S++ L + KN+ R
Sbjct: 447 AGYPQPIVDLSQSRERALSAF---KNLPQRQ 474
>gi|336310565|ref|ZP_08565537.1| deoxyribodipyrimidine photolyase [Shewanella sp. HN-41]
gi|335866295|gb|EGM71286.1| deoxyribodipyrimidine photolyase [Shewanella sp. HN-41]
Length = 477
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 148/443 (33%), Positives = 243/443 (54%), Gaps = 27/443 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAII 84
+R I + + + L I + D +A + + ++ I V + E
Sbjct: 54 ERHINLLAQGLASLGITFELIQLDT---FADVPRFLGHYCLQQGIGRVFAGSEPEINEQQ 110
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQ 144
RD+ + +G ++ + + +LN +G Y +F+ + +KW E + +
Sbjct: 111 RDQACIQ----VGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHA--IL 164
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK- 203
PV + L ++ K ++ N++ + +SS G AK+LL+ FI+
Sbjct: 165 PLPVPAPLGPVLAEPK--PLLFNHV----------TKVSSEFWAAGEGQAKLLLSAFIQQ 212
Query: 204 KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
K+++Y +R++P+I+GTS +S +L G +S R+ V + + D TWL++L
Sbjct: 213 KVQDYKQDRDFPAIDGTSSMSPYLAIGVVSPRQCVAALLHHFPEVIADDTSPARTWLNEL 272
Query: 264 IWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
WR+FY+ +L +P++ + +F ++ D++ W ++ + F WC+G TGYP+ID+A+ Q
Sbjct: 273 TWREFYRHLLVAFPDLSKSHNFNRQADHVQWRNN---PQEFAAWCEGRTGYPIIDAAMRQ 329
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
LN +G+MHNRLRMV ASFL K++ I+W+WGE YF KL D DLA+NNG WQWSA GC +
Sbjct: 330 LNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDA 389
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN- 441
QP+FRIFNP+ QS+KFD G FIRKYLP+L+ K +H P A + L + + +
Sbjct: 390 QPYFRIFNPMSQSEKFDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFEPPLFNTQTA 449
Query: 442 YPKPILEHSLSKKNILKRYNFIK 464
YP I+EHS ++ L +K
Sbjct: 450 YPSAIVEHSAARARALTVLGVLK 472
>gi|381394101|ref|ZP_09919819.1| deoxyribodipyrimidine photo-lyase [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330373|dbj|GAB54952.1| deoxyribodipyrimidine photo-lyase [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 469
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 155/464 (33%), Positives = 254/464 (54%), Gaps = 18/464 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V V+I+D ++ ++ ++ +++ L +L D +L++ + +
Sbjct: 23 KVLPVYIYDTSV----PQNAVLGGASKWWLHHALVALQESL---DGNLLVLSGDPQEILL 75
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L + NI +V N YEP AI RD IKK LK C S +++E ++L K P
Sbjct: 76 SLCTQHNISSVHWNRMYEPWAIARDTAIKKALKASECDALSTNGSLLWEPMQVLKKDETP 135
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+ Y K + Y Q P S+++++ + + ++ +
Sbjct: 136 YKVFTPYYKNGCLNAPDPR-YPQRKPPLSFMDDMDEVKGYQGVDSLALLPRVNWDLHMQE 194
Query: 182 LSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ ++ GA+ L FIK+ I+ YN +RN PS+ GTS LS + FG IS +
Sbjct: 195 MWNVS----EQGAQCKLEYFIKQAIEEYNDDRNVPSVAGTSQLSPYFHFGLISPNQAWYA 250
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + G + +LS+L WR+F +L+ + ++ N++F ++DN W D K
Sbjct: 251 VHDAFNGSRENK--GVYVYLSELGWREFSYYLLFHFNDIQNRNFNTKFDNFPWVQD---K 305
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+ W +G TG P++D+ + +L +GYMHNR+RM+ AS+L+KN+ I+W+ GE +F + L
Sbjct: 306 EGLRAWQQGKTGVPIVDAGMRELYQTGYMHNRVRMIVASYLVKNLLIDWREGERWFWDCL 365
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D D ASN+ WQW A SG + P+FRIFNPI+Q +KFD +G +++KY P+LSKL K++
Sbjct: 366 LDADSASNSAGWQWVAGSGADASPYFRIFNPILQGEKFDKEGAYVKKYCPELSKLGKKFL 425
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
H PW+AS +L A I+LGK+YPKPI++ S+ L Y IK
Sbjct: 426 HKPWEASEQELLSANIVLGKDYPKPIVDLKKSRVRALDAYKTIK 469
>gi|300710895|ref|YP_003736709.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
gi|448297012|ref|ZP_21487062.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
gi|299124578|gb|ADJ14917.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
gi|445580689|gb|ELY35067.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
Length = 459
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/462 (31%), Positives = 241/462 (52%), Gaps = 32/462 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF+ D+ +L+ R+ F+ ++ L + +L+I S + L
Sbjct: 26 VFVLDEAVLEHAAPP------RVAFMLDALESLREAYRERGGNLLIERGDPSAVVPTLAA 79
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
+ +D V+ NHDY A RD+ ++ L G Y D VI E I G PYS+F
Sbjct: 80 EFGVDTVVWNHDYSGLARERDEAVRAALDERGINHEQYHDAVIHEPGSITTTDGDPYSVF 139
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+++ KKW+++ K + PV + S I +L+DLGF S
Sbjct: 140 TYFGKKWLDRDKPD-------PVSA------PESVSDPDDPGGIPALSDLGFEAPEGSV- 185
Query: 186 GIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
G A+ L F I+ Y +R+YPS GTS LS+ L+FGT+ IR++
Sbjct: 186 -PDAGPDAAENRLETFCDGPIRRYEEDRDYPSRGGTSRLSVDLKFGTVGIRRVYAATENA 244
Query: 245 IKKHYKTDCIGYFT-WLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNF 303
+ + G + SQL WR+FY +LY +PNVV K++K I W +D ++ F
Sbjct: 245 KAEAGSKEERGSVEEFQSQLAWREFYTQVLYYHPNVVTKNYKTYDGEIEWRTD---EEGF 301
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
W +G TGYP++D+ + QL +MHNR+RM+ A+FL K++ ++W+ G ++F L D
Sbjct: 302 DAWTEGKTGYPIVDAGMRQLREESWMHNRVRMLVAAFLTKDLLVDWREGYDWFRKHLVDH 361
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
D ++ G WQW+AS+G +QP+FRIFNP+ Q +++D +IR+Y+P+L ++ K IH+
Sbjct: 362 DTGNDTGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIREYVPELREVDPKTIHA- 420
Query: 424 WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
W ++A +G YP PI++H++ ++ ++ + +
Sbjct: 421 WHDLD---DEARPDVG--YPAPIVDHAIRREVAIETFERARG 457
>gi|387813308|ref|YP_005428790.1| deoxyribodipyrimidine photolyase, FAD-binding (Photoreactivating
enzyme) [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381338320|emb|CCG94367.1| deoxyribodipyrimidine photolyase, FAD-binding (Photoreactivating
enzyme) [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 463
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 240/445 (53%), Gaps = 36/445 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLII----RYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
R+ F+ + L+ L L R++ S + + +I V N +Y
Sbjct: 49 RVRFVLEHANALARELAELGVPLTFLNAERFSDGSDALLQFCKDSDIADVHFNEEYGINE 108
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RDK ++ L G + Y+DQ + +IL + +PYS+F+ + ++W ++ +
Sbjct: 109 RRRDKALRDRLVDFGIRVSKYRDQTVAPVGQILTQQNEPYSVFTPFSRRWRSWIEETRPT 168
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L +P + + N V + + + L + TG A L F+
Sbjct: 169 L--HPRPAAIGNAVKPEQTDTLPAPFRAAPEPL-----------VPTGEDAAHEQLEAFL 215
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ K+Y NR++P+++GTS LS +L G +S R+ + K G TW++
Sbjct: 216 ADRAKDYKDNRDFPALDGTSQLSPYLANGVLSGRQCL-----IAAKQSGLSGEGVETWIN 270
Query: 262 QLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
++ WRDFY ILY YP V + ++FK+E + + W N ++F W +G TG P++D+A+
Sbjct: 271 EIAWRDFYIHILYHYPRVSMGRAFKEETEALAW---NTPGEHFEAWKEGRTGIPIVDAAM 327
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL ++G+MHNRLRM+TA FL KN+ I+W+ GE +F L D LASNNG WQWSAS+G
Sbjct: 328 RQLKATGWMHNRLRMITAMFLTKNLFIDWRLGEAWFMQNLVDGFLASNNGGWQWSASTGT 387
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
+ P+FR+FNP+ QS++FD +G FIR ++P+L+KL NK IH P + G ++ K
Sbjct: 388 DAAPYFRVFNPVTQSERFDPKGEFIRNWVPELAKLDNKRIHDPSR---------GGVIPK 438
Query: 441 NYPKPILEHSLSKKNILKRYNFIKN 465
YP+PI++ S+K + R+ +K+
Sbjct: 439 GYPRPIVDLKESRKEAIARFQALKD 463
>gi|392401812|ref|YP_006438424.1| DNA photolyase FAD-binding protein [Turneriella parva DSM 21527]
gi|390609766|gb|AFM10918.1| DNA photolyase FAD-binding protein [Turneriella parva DSM 21527]
Length = 444
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 249/464 (53%), Gaps = 61/464 (13%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ V CVFIFD NIL L+ I D RI FIF ++ +L +L+ S L I +
Sbjct: 39 LPVMCVFIFDPNILRHLK---IKNDSRITFIFDTLQKLDADLRARGSMLRIFFDAPLSVY 95
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
++L N+ + N DYEP A RD + K G +F ++KD V+F +E+L GK
Sbjct: 96 ERLFQSFNVRGIWCNEDYEPYARERDAAVAGLCKAKGAEFHAHKDHVVFAPHEVLKDDGK 155
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSK-LHKIINNNIISLNDLGFCK 179
PY++F+ Y ++W+ + + PV + L K L ++ L +GF +
Sbjct: 156 PYNVFTPYSRRWLAR------FADEPPV---YHELASKGKFLPATADHQNPGLRAIGFER 206
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
S ++ + A + I++Y+ R+ PS+ GTS L +HLRFGT+SIR L
Sbjct: 207 S---AIAVPPPLFDAAL--------IEHYSDTRDIPSVAGTSRLGVHLRFGTVSIRALAA 255
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
L + +K +L++LIWR+FYQMI++ YP+ + F+ Y+ + + +
Sbjct: 256 LAARLSQK-----------FLAELIWREFYQMIIWYYPHTTKRPFRAIYEQLKFPG---S 301
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ +F W +G TGYPL+D+ + +L ++G+MHNR+RM+ ASFL K++ +W+WGE++FA
Sbjct: 302 EADFKAWTRGETGYPLVDAGMRELVATGFMHNRVRMLVASFLTKHLLCDWRWGEHFFAQH 361
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L DF+LASN G WQWSA G + P+FRIFNP Q KKFD + I+I ++L
Sbjct: 362 LLDFELASNVGGWQWSAGIGVDAAPYFRIFNPSEQQKKFDPKNIYIDRWL---------- 411
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
K G PI++H +++ LK ++ +
Sbjct: 412 -------------KNDNFFGTEARAPIVDHRFARERCLKFFSTV 442
>gi|422421189|ref|ZP_16498142.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL S4-171]
gi|313639222|gb|EFS04159.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL S4-171]
Length = 471
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/405 (37%), Positives = 233/405 (57%), Gaps = 27/405 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + F+Y D + N++ Y +F+ Y
Sbjct: 89 DKVYFNRDETGYGAKRDEAALQFFAKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYY 148
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSL-G 186
KKW E++K P+ LN S K++K I + + F + L L
Sbjct: 149 KKWREEIKER-------PLPISLN----SEKVNKTI---LFPEEEKQFAEMTRELPPLDA 194
Query: 187 IKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
K G A+ LN+F+K+ + +YN R++P ++ TS+LS LR G +SIR +++ +
Sbjct: 195 TKLGEQAAQNHLNHFVKENLADYNEARDFPDLDKTSHLSRFLRTGEVSIR----TVWQAV 250
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN 305
++ T+ G T+ +L WRDFY MI +PN N++ + Y I WE++ + NF
Sbjct: 251 QEAEHTN--GRATFEKELCWRDFYNMIYVSFPNQKNEAIQANYRFIEWENN---RTNFQK 305
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W +G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W+WGE YF L D+D
Sbjct: 306 WQQGITGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRWGEKYFQQMLIDYDP 365
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASN G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +K+IH P K
Sbjct: 366 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFIRKYVQELAGLPDKFIHQPEK 425
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+ + EK +I+G++YP PI++H +K + RY F K+ + N
Sbjct: 426 MTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYEFSKDYASDN 470
>gi|120555269|ref|YP_959620.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
gi|120325118|gb|ABM19433.1| deoxyribodipyrimidine photo-lyase type I [Marinobacter aquaeolei
VT8]
Length = 463
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 241/445 (54%), Gaps = 36/445 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLII----RYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
R+ F+ + L+ L L R++ S + + +I V N +Y
Sbjct: 49 RVRFVLEHANALARELAELGVPLTFLNAERFSDGSDALLQFCKDSDIADVHFNEEYGINE 108
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RDK ++ L G + Y+DQ + +IL + +PYS+F+ + ++W ++ +
Sbjct: 109 RRRDKALRDRLVDFGIRVSKYRDQTVAPVGQILTQQNEPYSVFTPFSRRWRSWIEETRPT 168
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L +P + + N V + + + L + TG A L F+
Sbjct: 169 L--HPRPAAIGNAVKPEQTDTLPAPFRDAPEPL-----------VPTGEDAAHEQLEAFL 215
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
++ K+Y NR++P+++GTS LS +L G +S R+ + K G TW++
Sbjct: 216 TERAKDYKDNRDFPALDGTSQLSPYLANGVLSGRQCL-----IAAKQSGLSGEGVETWIN 270
Query: 262 QLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
++ WRDFY ILY YP V + ++FK+E + + W N ++F W +G TG P++D+A+
Sbjct: 271 EIAWRDFYIHILYHYPRVSMGRAFKEETEALAW---NTPGEHFEAWKEGRTGIPIVDAAM 327
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL ++G+MHNRLRM+TA FL KN+ I+W+ GE +F L D LASNNG WQWSAS+G
Sbjct: 328 RQLKATGWMHNRLRMITAMFLTKNLFIDWRLGEAWFMQNLVDGFLASNNGGWQWSASTGT 387
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
+ P+FR+FNP+ QS++FD +G FIR ++P+L+KL NK IH P + G ++ K
Sbjct: 388 DAAPYFRVFNPVTQSERFDPKGEFIRNWVPELAKLDNKRIHDPSR---------GGVIPK 438
Query: 441 NYPKPILEHSLSKKNILKRYNFIKN 465
YP+PI++ S+K + R+ +K+
Sbjct: 439 GYPRPIVDLKESRKEAIARFQALKD 463
>gi|59713936|ref|YP_206711.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
ES114]
gi|59482184|gb|AAW87823.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
ES114]
Length = 479
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 163/447 (36%), Positives = 252/447 (56%), Gaps = 32/447 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLII----RYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+ I + ++EL L+ + LI+ ++ +I L +L+++A+ N +YE
Sbjct: 54 QIDLIKRRLVELKNELEQLNIPLIVISSPLFSEIPAKITALFNELSVNALFANKEYEHDE 113
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+RD + + L C FF K I I+N+T +PY +F+ ++K W Y
Sbjct: 114 RLRDTQVYESLLNTNCYFFDAK--CILPVGTIINRTQQPYKVFTPFKKAWKASF-----Y 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKI-LLNNF 201
Q + +++ KL K ++ N ND F S+ + G ++ A I +L F
Sbjct: 167 QQQPHITKTGKSVLCDPKLIKKLSLN----NDDSFVFSSSNESGSWPVSTKAIIDILRQF 222
Query: 202 IK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ K+ Y+ NR+YP I GTS LS +L G IS ++ + ++ +Y+ + G WL
Sbjct: 223 CRQKVSQYHNNRDYPEIQGTSQLSPYLAIGAISAKQCALRLH--LEANYELN-QGEDIWL 279
Query: 261 SQLIWRDFYQMILYCYPNVVNKSFKKEYDN-ILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
+LIWR+FY +L+ YPN+ YD I W+++ +F WCKG TG+P++D+A
Sbjct: 280 DELIWREFYTHLLHFYPNLSKNQAFLSYDKYIEWDNN---LDHFERWCKGETGFPIVDAA 336
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QLN++G+MHNRLRM+TASFL+K++ I+W+WGE YF +KL D D ASNNG WQW AS G
Sbjct: 337 MKQLNTTGWMHNRLRMITASFLVKDLHIDWRWGEQYFMSKLIDGDFASNNGGWQWCASVG 396
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
C S P+FRIFNPI Q KKFD FI+ +LP+L LSNK IH P A ++
Sbjct: 397 CDSSPYFRIFNPITQGKKFDADCTFIKHWLPELKALSNKEIHHP--------NPAPLLKS 448
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNI 466
NYP I++H+ + +++ Y K +
Sbjct: 449 DNYPDQIVDHAQQRIKVIEVYKQAKQL 475
>gi|746118|prf||2017201A DNA photolyase
Length = 486
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/446 (32%), Positives = 244/446 (54%), Gaps = 20/446 (4%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDL-IIRYAIASKEIKKLVIKL-NIDA 71
LDP + +E ++ F+++++ L+ DL II I ++ KL+ IDA
Sbjct: 50 LDPKTAS--VEPVHHDYFFQTVMQFKQMLKTNGGDLYIITGTIEGGQLSKLLQAFPEIDA 107
Query: 72 VMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKK 131
V N D +RD+ + L F++++D + E +++L K G PY +F+ Y K
Sbjct: 108 VYANDDRVGDGRLRDEAAEHFLAKQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKA 167
Query: 132 WIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGA 191
W ++ K ++ + ++ + + + NN+I C + S++G +
Sbjct: 168 WAKERKRTPAVIKRDVLLGSVHKGTAPDREAETLFNNLIKK-----CSYDWSAIGEEHAI 222
Query: 192 SGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKT 251
++ K++ Y NR++PSI GTS LS +++ G +S R + I Y
Sbjct: 223 KRLQMFTK---KRLSGYKANRDFPSITGTSRLSPYIKTGAVSSRSIYYHILNAEADSYSA 279
Query: 252 DCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
+ T+L +L WRDFY+M+ + P+ ++ + Y + W D + + +W +G T
Sbjct: 280 E-----TFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHD---QDDLTSWKRGET 331
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
G+P++D+ + QL + G+MHNRLRM+TASFL K++ I+W+ GE YF L D+D +SN G
Sbjct: 332 GFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGG 391
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL 431
WQW+AS G + P+FRIFNP+ QSK+FD G +IR Y+P+L+ + + YIH PWK S +
Sbjct: 392 WQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKMSEEEQ 451
Query: 432 EKAGIILGKNYPKPILEHSLSKKNIL 457
K L ++YP PI++HS +K L
Sbjct: 452 VKYKCRLDEDYPLPIVDHSKQRKKAL 477
>gi|289433865|ref|YP_003463737.1| hypothetical protein lse_0498 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289170109|emb|CBH26649.1| phrB [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 471
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 229/402 (56%), Gaps = 21/402 (5%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + F+Y D + +++ Y +F+ Y
Sbjct: 89 DKVYFNRDETGYGAKRDEAALQFFAKEEIEVFAYHDAYLHHADDVKKSATDFYKVFTPYY 148
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K + P K +NN + + K L L K
Sbjct: 149 KKWREEIKERPLPISINPEK--VNNTILFPEDEKQFVEMTRELPPLD---------ATKL 197
Query: 190 GASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A+ LN+F+K+ + +YN R++P ++ TS+LS LR G +SIR +++ +++
Sbjct: 198 GELAAQSHLNHFVKENLADYNEARDFPDLDKTSHLSRFLRTGEVSIR----TVWQAVQEA 253
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ G T+ +L WRDFY MI +PN N++ + Y I WE++ + NF W +
Sbjct: 254 EHTN--GRATFEKELCWRDFYNMIYVSFPNQKNEAIQANYRFIEWENN---RTNFQKWQQ 308
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W+WGE YF L D+D ASN
Sbjct: 309 GATGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRWGEKYFQQMLIDYDPASN 368
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +K+IH P K ++
Sbjct: 369 IGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFIRKYVQELAGLPDKFIHQPEKMTN 428
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+ EK +I+G++YP PI++H +K + RY F K+ + N
Sbjct: 429 QEQEKFHLIIGEDYPFPIVDHKERRKLAIARYEFSKDYASEN 470
>gi|313126193|ref|YP_004036463.1| deoxyribodipyrimidine photo-lyase type i [Halogeometricum
borinquense DSM 11551]
gi|448286034|ref|ZP_21477270.1| deoxyribodipyrimidine photolyase [Halogeometricum borinquense DSM
11551]
gi|312292558|gb|ADQ67018.1| deoxyribodipyrimidine photo-lyase type I [Halogeometricum
borinquense DSM 11551]
gi|445575333|gb|ELY29809.1| deoxyribodipyrimidine photolyase [Halogeometricum borinquense DSM
11551]
Length = 469
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/466 (31%), Positives = 240/466 (51%), Gaps = 29/466 (6%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VF+FD ++L G R+ F+ ++ L + DSDL++ ++E+
Sbjct: 26 DVVPVFVFDDDVL---AHAGAA---RVRFMLDALARLRETYRERDSDLVVVRGDPTEELP 79
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L + + D V+ N DY A RD+ +++ L G + D + E I G P
Sbjct: 80 RLAAEYDADGVVWNKDYSRLARTRDEAVRRALDEAGVAHDAVHDAIHHEPGSITTNAGDP 139
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
YS+++++ KKW + NK S P + L + ++ ++ +LGF S+
Sbjct: 140 YSVYTYFWKKWRNR---NKADPFSPP---------EADSLADVSGADLPTIEELGF--SD 185
Query: 182 LSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ + G A+ L F + I Y +R+YP N TS LS L++GTI IR++
Sbjct: 186 PDATIQEAGTEAARERLAAFCEDAIYRYATDRDYPERNATSRLSADLKWGTIGIREVYAA 245
Query: 241 IFKFIKKHYKTD-CIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ + D + SQL WR+FY +LY P+VV +++K+ ++I W D A
Sbjct: 246 TEEAAENADSDDEAKSVEEFQSQLAWREFYTHVLYFNPDVVTQNYKEYENDIAWREDEEA 305
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
W +G TGYP++D+ + QL YMHNR+RM+ ASFL K++ I+W+ G +F
Sbjct: 306 ---LTAWKEGRTGYPIVDAGMRQLREEAYMHNRMRMIVASFLTKDLLIDWREGYAHFRAY 362
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D +I++Y+P+L +
Sbjct: 363 LADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDATYIQQYVPELRDATADE 422
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH S + E + YP PI+EHS + + + +
Sbjct: 423 IHDWPNLSPTERE----TVAPEYPDPIVEHSKRRDQAISMFEAARG 464
>gi|427723364|ref|YP_007070641.1| deoxyribodipyrimidine photo-lyase type I [Leptolyngbya sp. PCC
7376]
gi|427355084|gb|AFY37807.1| deoxyribodipyrimidine photo-lyase type I [Leptolyngbya sp. PCC
7376]
Length = 475
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/467 (33%), Positives = 248/467 (53%), Gaps = 27/467 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF FD IL + + R++++ + ELS + S+L+I + + +
Sbjct: 31 VVGVFCFDPAIL----TADDMAPARVKYLLACLEELSESYCQVGSELLILNGKPVELLPR 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L AV N D EP A RD + L+ G K + DQ++ +IL K+ PY
Sbjct: 87 VTAILKATAVYWNLDVEPYAQKRDHDMAIALRQAGAKVETVWDQLLHPPGKILTKSKSPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLH-KIINNNIISLNDLGFCKSN 181
++S + + W ++ K+ + P + L + + K N + SL LGF
Sbjct: 147 KVYSPFWRNWSKQEKA-----EPLPAIADCAGLSDAEREKIKEFNIELPSLETLGFEWEQ 201
Query: 182 LSSLGIKTGASGAKI--LLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
++ + S A++ NF++ Y +RN+P+I GTS LS L+FG I IRK+ +
Sbjct: 202 PFTVPVGERQSLAQLETFTENFVEA---YEGDRNFPAIEGTSRLSAALKFGVIGIRKVWQ 258
Query: 240 LIFKFIKKHYKTDCI-GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
++ + G TW +L WR+FYQ ++ +P + ++ E+ WE+D
Sbjct: 259 STLDALENCRSEEAEKGVTTWQQELAWREFYQHCMFFFPELAKGPYRDEFQAFQWEND-- 316
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ F WC G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ I+W+WGE YF
Sbjct: 317 -ETKFQAWCAGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQ 375
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D DL++NNG WQWSASSG +P RIFNP Q+KKFD + +IRK+LP++ L K
Sbjct: 376 TLVDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQTKKFDAEAEYIRKWLPEVRSLDTK 434
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ + SS I NYP+PI++H++ ++ + Y +K
Sbjct: 435 VLVTGKIPSS-------ICEQCNYPEPIVDHAVQQREFKRLYKVMKE 474
>gi|359415637|ref|ZP_09208066.1| deoxyribodipyrimidine photo-lyase [Candidatus Haloredivivus sp.
G17]
gi|358034017|gb|EHK02493.1| deoxyribodipyrimidine photo-lyase [Candidatus Haloredivivus sp.
G17]
Length = 438
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/435 (32%), Positives = 241/435 (55%), Gaps = 17/435 (3%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRD 86
R++F +S+IE +LQ + DL+I+ +++KKL+ + + + N DY + RD
Sbjct: 17 RVKFWRESLIEFKEDLQEKNKDLVIKKGNPIEQLKKLIEETGAEKIYFNRDYSKYSRERD 76
Query: 87 KLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSY 146
+ + + + + +KD +FEK EIL G PY +++Y KKW +K K ++Y
Sbjct: 77 E----KFRGLDIEVEDFKDVTMFEKEEILTNDGTPYKTYTYYAKKWFKKEKRRPQEPENY 132
Query: 147 PVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIK 206
V + + ++ I SL LGF + G + F +KI
Sbjct: 133 EVPT-------------VESDEIPSLQKLGFEEPENFEWKWNPAREGGLKRIEEFKEKIL 179
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWR 266
+Y+ +R+Y + TS LS HL+FGT+SIR+ + ++ +D G TW +L WR
Sbjct: 180 DYDEDRDYAWKDSTSKLSPHLKFGTVSIRECFWEAERIKARNPNSDTSGVKTWQEELAWR 239
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
DFY +L+ YP +K+ +++ +I W S AK ++ + G TG+P +D+ + QL +
Sbjct: 240 DFYFQMLWNYPESQDKALLEQFRSIDWRSKEDAKGDWEAFINGKTGFPFVDAGMRQLKKT 299
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
G+MHNRLRMV SF K++ ++WK +F D ++AS G QW+ S G +QP+F
Sbjct: 300 GWMHNRLRMVVTSFACKDLWLDWKDLHQFFNENFVDAEIASMIGGIQWAYSIGTDAQPYF 359
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
R+FNP Q +K+D G +IRK++P+L + ++YIH P + + +++ I+G++YP+PI
Sbjct: 360 RVFNPWTQGEKYDPDGEYIRKWVPELRDVPDEYIHRPQEMNQIAQKESNCIIGEDYPEPI 419
Query: 447 LEHSLSKKNILKRYN 461
++H +K ++R+
Sbjct: 420 VDHDEERKKAVERFE 434
>gi|398842541|ref|ZP_10599720.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM102]
gi|398105638|gb|EJL95725.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM102]
Length = 482
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/450 (34%), Positives = 254/450 (56%), Gaps = 28/450 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+++F +++IEL L + L+IR A +E K+++ +L IDAV N +Y
Sbjct: 47 KVDFWLRNLIELRQALGALNIPLLIRKASLWEEAPKVLLELCQQLKIDAVHANEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + LK G F+ Y DQ++F+ +L +TG + +FS ++K E++ ++
Sbjct: 107 TRRDAAVAQALKAQGIDFYRYLDQLLFKPGTVLTRTGTYFQVFSQFRKVCYERLHASLPR 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L + P + ++ + S +L +L G S A+ L F
Sbjct: 167 LVTAPAIQAPLGIASDEPPSRVEGFDTPS--------DSLRAL-WPAGESEARRRLETFT 217
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+I Y+ R++P+ GTS LS +L G IS R+ + + + +++ +G TW++
Sbjct: 218 DTQIDYYHSERDFPAKPGTSQLSAYLTAGVISPRQCLHAALQSNQGEFESGKVGAVTWIN 277
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+L+WR+FY+ IL YP V +++F+ E + + W A ++ W +G TG P+ID+A+
Sbjct: 278 ELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APQDLKAWQQGRTGLPIIDAAM 334
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 335 RQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGT 394
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
S P+FRIFNP+ QS+KFD +G+FI+ +LPQ++ ++ K +H + +LE G+
Sbjct: 395 DSAPYFRIFNPLSQSEKFDAEGVFIKHWLPQINGMNKKDLH-----NRARLE--GLFGVT 447
Query: 441 NYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP PI+ S S++ L + KN+ +R
Sbjct: 448 DYPSPIVNLSTSRERALAAF---KNLPSRQ 474
>gi|313682739|ref|YP_004060477.1| deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM
16994]
gi|313155599|gb|ADR34277.1| Deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM
16994]
Length = 455
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 168/468 (35%), Positives = 257/468 (54%), Gaps = 42/468 (8%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV +FIFD NIL L++ +DRR+ I+ +++ L +LQ DL + Y K
Sbjct: 24 EVLPIFIFDPNILSSLQN----DDRRVSIIYNALLNLKSSLQMRGLDLALFYGKPVDVFK 79
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L+ + + D V + DY+ A+ RD+ I L F S D IF +EI+ G P
Sbjct: 80 WLLSRHHFDEVCASGDYDHYALERDREISHLLP-----FNSLDDTYIFRPDEIVKNDGTP 134
Query: 122 YSIFS-FYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIIS----LNDLG 176
Y +F+ FY + + + S + + PV+ L + + S LH I ++ S L +G
Sbjct: 135 YLVFTPFYNRA--KSLFSPEHMREFIPVEQSLTDFEYDS-LHTIRQSDHTSKPMQLESIG 191
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
F LSS S I L+ F KI +Y+ +R+Y ++NGTS LS LRFGT+S+R
Sbjct: 192 FISQKLSS----RQQSSPAIQLDQFASKIAHYSQDRDYMALNGTSGLSTQLRFGTLSVRA 247
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+++ + I+K +D +F QLI+R+FY M+LY +P++ ++F+ + I
Sbjct: 248 VLRWML--IQKKRGSDTEPFF---RQLIFREFYAMLLYHFPHLSEQNFRYPFRGI----- 297
Query: 297 NYAKKNFLN-WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
A + + N +C TG P++D+ I +L +G MHNR RM+ ASF KN+ + W+WGE +
Sbjct: 298 --ANEEYFNAFCTAKTGVPIVDAGIRELLETGEMHNRARMLCASFFTKNLLLPWQWGEAF 355
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA LND+D ASN +WQWSA +G QP+FRIFNP Q KKFD G++IR+++PQL+ +
Sbjct: 356 FAQHLNDYDAASNILSWQWSAGTGVDPQPYFRIFNPYAQGKKFDSDGVYIRRWMPQLASV 415
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
S+ +H+ S L +YP PI+ S K L + I
Sbjct: 416 SSTTLHNETALFSLTL--------CDYPHPIVYQKTSAKRALDHFKSI 455
>gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
Length = 477
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/463 (32%), Positives = 244/463 (52%), Gaps = 31/463 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CVF F+K L+ L S R S++ L+ DL + Y ++L+
Sbjct: 39 CVFQFNKEQLNLLHS------RNQSSFITSVLAFRKLLKCESIDLYLMYGDLMTCFEQLL 92
Query: 65 IKL-NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYS 123
+L + V N+D +RD+ + K G +Y+D + EI+N++G+PY
Sbjct: 93 TQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYK 152
Query: 124 IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS 183
+F+ Y + W Q+YP ++ + + + + + + F
Sbjct: 153 VFTPYYRIW-----------QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQ 201
Query: 184 SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ AS LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR + +
Sbjct: 202 DVATFDEASKQ---LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 258
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + +G T+L +L WRDFY M+ YP+ + +K + I W ++
Sbjct: 259 Q------APNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---PDW 309
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE YF +L D
Sbjct: 310 FQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLID 369
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D ASN G WQW+AS+G + P+FRIFNP+ Q K+FD +G FI+ YLPQL + KY+H
Sbjct: 370 YDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHE 429
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PWK Y E I+G +YP+PI++H+ ++ + +Y + K
Sbjct: 430 PWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKE 472
>gi|373950404|ref|ZP_09610365.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183]
gi|386323758|ref|YP_006019875.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175]
gi|333817903|gb|AEG10569.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175]
gi|373887004|gb|EHQ15896.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183]
Length = 503
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 215/370 (58%), Gaps = 19/370 (5%)
Query: 97 GCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLV 156
G ++ + + +LN +G Y +F+ + +KW E + + L PV + L ++
Sbjct: 147 GIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE-IAARHAIL-PLPVPAPLGPVL 204
Query: 157 HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYP 215
K H + NN+I +SS G AK +L+ FI+ K+++Y +R++P
Sbjct: 205 TEPKPH--LFNNVI----------KVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 252
Query: 216 SINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYC 275
+I+GTS +S +L G +S R+ V + + D TWL++L WR+FY+ +L
Sbjct: 253 AIDGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVA 312
Query: 276 YPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLR 334
+P++ N +F ++ D++ W ++ + F WC+G TGYP++D+A+ QLN +G+MHNRLR
Sbjct: 313 FPDLSKNHNFNRQADHVQWRNN---PQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLR 369
Query: 335 MVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQ 394
MV ASFL K++ I+W+WGE YF KL D DLA+NNG WQWSA GC +QP+FRIFNP+ Q
Sbjct: 370 MVVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQ 429
Query: 395 SKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKK 454
S+KFD G FIRKYLP+L+ K +H A + L + YP I+EHS ++
Sbjct: 430 SEKFDPDGSFIRKYLPELASWGIKQLHQSSTAQTPSLFDQPLFTKTAYPSAIVEHSAARA 489
Query: 455 NILKRYNFIK 464
L +K
Sbjct: 490 RALTVLGVLK 499
>gi|404399161|ref|ZP_10990745.1| deoxyribodipyrimidine photolyase [Pseudomonas fuscovaginae UPB0736]
Length = 481
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 248/449 (55%), Gaps = 27/449 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+F +++ ELS L + L+IR+A A + L L IDAV +N +Y
Sbjct: 47 KIDFWLRNLRELSQALAELNIPLLIRHADTWDQAPAVLLDLCQPLAIDAVHVNEEYGVHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + K L+ G F S+ DQ+ F +L +TG + +FS ++K CY
Sbjct: 107 TRRDQAVAKALESHGIDFHSHLDQLFFRPGSVLTRTGGYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
+ + L + + ++ I S D GF S + G A+ L +F
Sbjct: 158 SRLHGALPALVAAPATQAPLPLSSDPIPSAVD-GFASPAQSLRDLWPAGEKEARRRLESF 216
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
++I Y R++P+ GTS LS +L G +S R+ + + + + + +G TW+
Sbjct: 217 ADQQIDYYQSERDFPAKPGTSQLSTYLAAGVVSPRQCLHAALQSNQGEFDSGNVGAVTWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W + A ++ W +G TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRN---APRDLEAWQQGRTGLPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 334 MRQLLATGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNPI QS+KFD +G+FI+ +LP+L+ L+ K +H+P G+
Sbjct: 394 TDSAPYFRIFNPISQSEKFDSEGLFIKHWLPELAALNKKDVHNP-------AALGGLFGV 446
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILN 468
+YP+PI++ + S++ L + + L
Sbjct: 447 ADYPQPIVDLASSRERALAAFKSLAPRLG 475
>gi|424924871|ref|ZP_18348232.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens R124]
gi|404306031|gb|EJZ59993.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens R124]
Length = 481
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/441 (34%), Positives = 245/441 (55%), Gaps = 27/441 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL+ L + L++R A A + +L ++LN+ AV +N +Y
Sbjct: 47 KVDFWLRNLRELTSRLGELNIPLLLRTADHWDQAPAVLLELCVQLNVQAVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + LK G F SY DQ++F+ +L KT + +FS ++K E++ +
Sbjct: 107 SQRDAAVAVALKTKGIAFHSYLDQLLFKPGTVLTKTDTYFQVFSQFRKVCYERLHRSMPA 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
L P K +KL+ I+++ + GF + S + G A+ L+ F
Sbjct: 167 LVKTPGKQ--------AKLN--IDSDPVPAAVAGFATPSESLRALWPAGEQEARHRLDTF 216
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+I Y R++P+ GTS LS +L G IS R+ ++ + + + + +G TW+
Sbjct: 217 ADAQIDYYQSERDFPAKPGTSQLSPYLAAGVISPRQCLQAALQSNQGEFDSGKVGAVTWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W A + W + TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APDDLAAWQEARTGLPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 334 MRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNPI QS+KFD +G+FI+ +LP+L+ L+ K +H+P G+
Sbjct: 394 TDSAPYFRIFNPISQSEKFDSEGLFIKHWLPELAGLNKKEVHNP-------ASVGGLFGV 446
Query: 440 KNYPKPILEHSLSKKNILKRY 460
NYP PI+ S++ L +
Sbjct: 447 ANYPSPIVNLGASRERALAAF 467
>gi|398969087|ref|ZP_10682700.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM30]
gi|398142781|gb|EJM31672.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM30]
Length = 481
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/452 (34%), Positives = 255/452 (56%), Gaps = 32/452 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ ELS +L + L++R A A + +L +LNI+AV +N +Y
Sbjct: 47 KVDFWLRNLRELSASLGALNIPLLLRTADHWDQAPAVLLELCRQLNIEAVHVNEEYGVDE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + LK G F SY DQ++F+ +L KT + +FS ++K E++ +
Sbjct: 107 SRRDAAVAVALKSKGIAFHSYLDQLLFKPGTVLTKTETYFQVFSQFRKVCYERLHRSMPA 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
L P K +KL+ I+++ + + GF + S + G A+ L+ F
Sbjct: 167 LVKAPGKQ--------AKLN--IDSDPVPASVPGFATPSESLRALWPAGEQEAQRRLDTF 216
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+I Y R++P+ GTS LS +L G IS R+ ++ + + + + +G TW+
Sbjct: 217 ADAQIDYYQSERDFPAKPGTSQLSAYLAAGVISPRQCLQAALQSNQGEFDSGKVGAVTWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W A + W + TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APDDLTAWQEARTGLPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 334 MRQLLETGWMHNRLRMIVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS+KFD +G+FI+ +LP+L+ L+ K +H+P AG + G
Sbjct: 394 TDSAPYFRIFNPLSQSEKFDSEGLFIKHWLPELAGLNKKEVHNP--------ASAGGLFG 445
Query: 440 -KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP PI+ S++ L + KN+ +R+
Sbjct: 446 VADYPAPIVNLGASRERALAAF---KNLPSRS 474
>gi|163800188|ref|ZP_02194089.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
gi|159175631|gb|EDP60425.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
Length = 471
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/450 (33%), Positives = 249/450 (55%), Gaps = 30/450 (6%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+ + + + L+I L + + ++A K I + + LN+ +VM
Sbjct: 44 MSPMQADLIA--RRLVLLEEELTGLNIPLIYKE---VPKFADVGKVIHQWAVSLNVKSVM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
N YE D+ + L F ++ D+ + +LNK G+ + +F+ +++ W+
Sbjct: 99 ANIHYEVNEQALDREVVNLLNESSITFDAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWL 158
Query: 134 EKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASG 193
+ + K + + P + ++ + K + D+ F SS S
Sbjct: 159 SQFQMPKVW-KPEPQAALSKEVLQAVKADRY-------HVDVSFSYPRESSERWHVSTSA 210
Query: 194 AKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
L F ++ + Y R++P+++GTS LS +L G +S R+ I + ++ TD
Sbjct: 211 ILQQLRGFTRERSDAYQAERDFPAVDGTSQLSPYLAIGALSPRQC---IARLHAENPHTD 267
Query: 253 CI-GYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGY 310
G TWLS++IWR+FYQ +L P +V + F + D I W D A F W G
Sbjct: 268 LTEGKATWLSEIIWREFYQHLLVFEPKLVKGQGFIQWEDKIEWSYDEVA---FERWSNGT 324
Query: 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNG 370
TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D A+NNG
Sbjct: 325 TGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGEAYFMSKLVDGDFAANNG 384
Query: 371 NWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYK 430
WQWSAS+GC QP+FRIFNPI Q +KFD+ G F+R ++P++ ++ NK+IH+PW S +
Sbjct: 385 GWQWSASTGCDGQPYFRIFNPISQGEKFDHDGTFVRHWVPEIKQVPNKFIHNPWLWSGFN 444
Query: 431 LEKAGIILGKNYPKPILEHSLSKKNILKRY 460
L +Y KP+++H + ++ L+ +
Sbjct: 445 L--------LDYHKPMVDHKVEREITLRLF 466
>gi|398952323|ref|ZP_10674712.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM33]
gi|398155251|gb|EJM43701.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM33]
Length = 480
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 255/452 (56%), Gaps = 32/452 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
+++F +++ ELS L + + L+IR A + +++ L +DA+ +N +Y
Sbjct: 47 KVDFWLRNLRELSRELGHLNIPLLIRQAPRWDDAPSVLLNLCRQWQVDALHLNDEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L+ G + Y DQ++F+ +L +TG + +FS ++K E++ +
Sbjct: 107 SRRDAAVARALQAEGIEVHRYLDQLLFKPGSVLTRTGTYFQVFSQFRKVCYERLHHSLPG 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN--LSSLGIKTGASGAKILLNN 200
L P K N I ++ + L+ GF LSSL G + A+ L++
Sbjct: 167 LVRAPHKQAPLN----------IASDAVPLSVEGFATPGDPLSSL-WPAGETEARRRLDS 215
Query: 201 FIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F + +I +Y R++P+ GTS LS +L G IS R+ + + +++ G TW
Sbjct: 216 FSEAQIDHYQNERDFPAKPGTSQLSAYLAAGVISPRQCLHAALNSNQGEFESGNTGAVTW 275
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+++L+WR+FY+ IL YP V +++F+ E + + W + A W + TG P+ID+
Sbjct: 276 INELLWREFYKHILVGYPRVSRHRAFRPETEALAWRN---APDELAAWQQARTGLPIIDA 332
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+
Sbjct: 333 AMRQLLATGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSST 392
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G S P+FRIFNP+ QS+KFD +G+FI+++LP+L+ L+ K +H+P G+
Sbjct: 393 GTDSAPYFRIFNPLSQSEKFDPEGVFIKQWLPELAGLNKKDVHNP-------ANLGGLFG 445
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
G +YP PI++ S S+ L + KN+ +R
Sbjct: 446 GVDYPSPIVDLSTSRTRALTAF---KNLPSRQ 474
>gi|386363038|ref|YP_006072369.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|421892494|ref|ZP_16323147.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
gi|350277447|gb|AEQ24815.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|379981746|emb|CCG26869.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
Length = 469
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/463 (32%), Positives = 244/463 (52%), Gaps = 31/463 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CVF F+K L+ L S R S++ L+ DL + Y ++L+
Sbjct: 31 CVFQFNKEQLNLLHS------RNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCFEQLL 84
Query: 65 IKL-NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYS 123
+L + V N+D +RD+ + K G +Y+D + EI+N++G+PY
Sbjct: 85 TQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYK 144
Query: 124 IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS 183
+F+ Y + W Q+YP ++ + + + + + + F
Sbjct: 145 VFTPYYRIW-----------QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQ 193
Query: 184 SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ AS LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR + +
Sbjct: 194 DVATFDEASKQ---LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 250
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + +G T+L +L WRDFY M+ YP+ + +K + I W ++
Sbjct: 251 Q------APNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---PDW 301
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE YF +L D
Sbjct: 302 FQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLID 361
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D ASN G WQW+AS+G + P+FRIFNP+ Q K+FD +G FI+ YLPQL + KY+H
Sbjct: 362 YDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHE 421
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PWK Y E I+G +YP+PI++H+ ++ + +Y + K
Sbjct: 422 PWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKE 464
>gi|434400657|ref|YP_007134661.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
gi|428271754|gb|AFZ37695.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
Length = 475
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 260/461 (56%), Gaps = 27/461 (5%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF D+N+L ++ + R+ ++ + +L + Q S L+I ++ I +L
Sbjct: 34 VFCLDENLL----TKDDVAPARVTYMIGCLQQLQQSYQQAGSQLLIIKGKPTQTIPQLAE 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK-PYSI 124
L V N D EP A RD+ +K L G + S DQ++ EIL K+ + PY++
Sbjct: 90 TLQAKTVFWNWDVEPYAKARDQKVKAALTEKGIEVSSLWDQLLHAPGEILTKSSQQPYTV 149
Query: 125 FSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSS 184
++ + K WIE+ K N + ++ + + ++ +IN + + DLG+ N
Sbjct: 150 YTPFWKNWIEQKKQN-AITKLNQFENLTDEEFNQAQQSGVIN--LPTAKDLGYIWDN--P 204
Query: 185 LGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL--- 240
L + G + AK L F + I Y+ RNYP+++GTS LS L+FG I IR + +
Sbjct: 205 LILAPGETAAKERLVEFCSRAINEYDEQRNYPAVDGTSQLSAALKFGAIGIRTVWEASTE 264
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + D I +W +L WR+FYQ +Y +P + ++++E+ + WE++ +
Sbjct: 265 AHENCRSDETRDNIR--SWQQELAWREFYQHCMYFFPELEQGAYRREFKDFPWENN---E 319
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F WC+G TGYP++D+A+ QLN G+MHNR RM+ ASFL K++ INW+WGE YF KL
Sbjct: 320 DYFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKL 379
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D DL++NNG WQWSASSG +P RIFNP Q++K+D +G +IR++LP+LS + N+Y+
Sbjct: 380 FDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDPEGEYIRQWLPELSSVDNEYL 438
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ K S + E+ +YP+PI++H + ++ + Y
Sbjct: 439 VTG-KISKSERERC------DYPQPIVDHKIQQRKFKELYQ 472
>gi|153001581|ref|YP_001367262.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185]
gi|151366199|gb|ABS09199.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185]
Length = 500
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/443 (34%), Positives = 238/443 (53%), Gaps = 27/443 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAII 84
+R I + + + L I + D +A I + ID V + E
Sbjct: 77 ERHINLLAQGLASLGIAFELIQLDT---FADVPAFISDYCHQQGIDRVFAGSEPEINEQQ 133
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQ 144
RD+ + G + + + +LN +G Y +F+ + +KW E + +
Sbjct: 134 RDQACIQA----GIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHA--IL 187
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK- 203
PV + L ++ K H N++ + +SS G AK +L+ FI+
Sbjct: 188 PLPVPAPLGPVLTEPKPH--FFNHV----------TKVSSELWAAGEGQAKRILSAFIQQ 235
Query: 204 KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
K+++Y +R++P+I+GTS +S +L G IS R+ V + + D TWL++L
Sbjct: 236 KVQDYKQDRDFPAIDGTSSISPYLAIGVISPRQCVAALLHHFPEVIVDDTSPARTWLNEL 295
Query: 264 IWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
WR+FY+ +L +P++ N +F ++ D++ W ++ + F WC+G TGYP++D+A+ Q
Sbjct: 296 TWREFYRHLLVAFPDLSKNHNFNRQADHVQWRNN---PQEFAAWCEGRTGYPIVDAAMRQ 352
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
LN +G+MHNRLRMV ASFL K++ I+W+WGE YF KL D DLA+NNG WQWSA GC +
Sbjct: 353 LNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDA 412
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN- 441
QP+FRIFNPI QS+KFD G FIRKYLP+L+ K +H P A + L + + K
Sbjct: 413 QPYFRIFNPISQSEKFDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFEQPLFNTKTA 472
Query: 442 YPKPILEHSLSKKNILKRYNFIK 464
YP I+EHS ++ L +K
Sbjct: 473 YPSAIVEHSAARARALTVLGVLK 495
>gi|422418064|ref|ZP_16495019.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL N1-067]
gi|313634631|gb|EFS01103.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL N1-067]
Length = 471
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/405 (37%), Positives = 233/405 (57%), Gaps = 27/405 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + F+Y D + N++ Y +F+ Y
Sbjct: 89 DKVYFNRDETGYGAKRDEAALQFFAKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYY 148
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSL-G 186
KKW E++K P+ LN S K++K I + ++ F + L L
Sbjct: 149 KKWREEIKER-------PLPISLN----SEKVNKTI---LFPEDEKQFVEMTRELPPLDA 194
Query: 187 IKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
K G A+ LN F+K+ + +YN R++P ++ TS+LS LR G +SIR +++ +
Sbjct: 195 TKLGEQAAQNHLNYFVKENMADYNEARDFPDLDKTSHLSRFLRTGEVSIR----TVWQAV 250
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN 305
++ T+ G T+ +L WRDFY MI +PN N++ + Y I WE++ + NF
Sbjct: 251 QEAEHTN--GRATFEKELCWRDFYNMIYVSFPNQKNEAIQANYRFIEWENN---RTNFQK 305
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W +G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W+WGE YF L D+D
Sbjct: 306 WQQGVTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRWGEKYFQQMLIDYDP 365
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASN G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +K+IH P K
Sbjct: 366 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFIRKYVQELAGLPDKFIHQPEK 425
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+ + EK +I+G++YP PI++H +K + RY F K+ + N
Sbjct: 426 MTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYEFSKDYASDN 470
>gi|398914031|ref|ZP_10656755.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM49]
gi|398179240|gb|EJM66856.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM49]
Length = 480
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 255/452 (56%), Gaps = 32/452 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
+++F +++ ELS L + L+IR A + +++ L +DA+ +N +Y
Sbjct: 47 KVDFWLRNLRELSRELGQLNIPLLIRQAPRWDDAPTVLLNLCRQWQVDALYLNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L+ G + Y DQ++F+ +L ++G + +FS ++K E++ +
Sbjct: 107 SRRDAAVARTLRAEGIEVRRYLDQLLFQPGSVLTRSGTYFQVFSQFRKVCYERLHHSLPS 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS--NLSSLGIKTGASGAKILLNN 200
L P K N I ++ I S D GF NL SL G + A+ L++
Sbjct: 167 LVRAPQKQAPLN---------IASDAIPSSVD-GFATPGDNLRSL-WPAGEAQARDRLDS 215
Query: 201 FI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F +I +Y R++P+ GTS LS +L G IS R+ ++ + +++ G TW
Sbjct: 216 FSDAQIDHYQSERDFPAKPGTSQLSAYLAAGVISARQCLRAALHSNQGEFESGNTGAVTW 275
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+++L+WR+FY+ IL YP V +++F+ E + + W + A + W + TG P+ID+
Sbjct: 276 INELLWREFYKHILVGYPRVSRHRAFRPETEALAWRN---APEELAAWQQARTGLPIIDA 332
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+
Sbjct: 333 AMRQLLATGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSST 392
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G S P+FRIFNP+ QS+KFD +G+FI+++LP+L+ L+ K +H+P G+
Sbjct: 393 GTDSVPYFRIFNPLSQSEKFDPEGVFIKQWLPELAGLNKKQVHNP-------ANLGGLFG 445
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
G +YP PI++ S S+ L + KN+ +R
Sbjct: 446 GVDYPSPIVDLSTSRTRALAAF---KNLPSRQ 474
>gi|398876027|ref|ZP_10631187.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM67]
gi|398205319|gb|EJM92103.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM67]
Length = 481
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/452 (34%), Positives = 253/452 (55%), Gaps = 32/452 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+++F +++ EL+ L + L+IR A E K+++ +L IDAV +N +Y
Sbjct: 47 KVDFWLRNLRELNRALGELNIPLLIRTASRWDEAPKVLLDLCQQLKIDAVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKV-KSNKC 141
RD + LK G F+SY DQ++F +L KTG + +FS ++K +++ +S
Sbjct: 107 SRRDAAVADALKTKGVDFYSYLDQLLFSPGTVLTKTGTYFQVFSQFRKVCYDRLHRSLPS 166
Query: 142 YLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNN 200
+++ V+S LN I+++ I + GF + + + G + A+ L+
Sbjct: 167 LVRAPAVQSKLN-----------IDSDEIPSSVAGFDTPSDTLRALWPAGEAEARRRLDT 215
Query: 201 FI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F +I Y R++P+ GTS LS +L G IS R+ + + + +++ +G TW
Sbjct: 216 FADAQIDYYKSERDFPAKPGTSQLSAYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTW 275
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+++L+WR+FY+ IL YP V +++F+ E + + W A W + TG P+ID+
Sbjct: 276 INELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APDELAAWQEARTGLPIIDA 332
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+
Sbjct: 333 AMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSST 392
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G S P+FRIFNP+ QS+KFD +G+FI+ +LP+L+ L+ K +H+P G+
Sbjct: 393 GTDSAPYFRIFNPLSQSEKFDSEGLFIKHWLPELAGLNKKDVHNP-------ANLGGLFG 445
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
YP PI+ S S+ L + KN+ +R
Sbjct: 446 VAGYPSPIVNLSTSRTRALAAF---KNLPSRQ 474
>gi|426411468|ref|YP_007031567.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. UW4]
gi|426269685|gb|AFY21762.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. UW4]
Length = 480
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 253/452 (55%), Gaps = 32/452 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
+++F +++ ELS L + L+IR A + +++ L +DA+ +N +Y
Sbjct: 47 KVDFWLRNLRELSRELGQLNIPLLIRQAPRWDDAPSVLLNLCRQWQVDALHLNDEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L+ G + Y DQ++F+ +L +TG + +FS ++K E++
Sbjct: 107 SRRDAAVVRTLQAEGIEVHRYLDQLLFKPGSVLTRTGTYFQVFSQFRKVCYERLHHALPS 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS--NLSSLGIKTGASGAKILLNN 200
L P K N I ++ I L+ GF +L SL G + A+ L+N
Sbjct: 167 LVRAPYKQAPLN----------IASDAIPLSVEGFATPGDHLRSL-WPAGETEARRRLDN 215
Query: 201 FIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F + +I++Y R++P+ GTS LS +L G IS R+ + + +++ G TW
Sbjct: 216 FSEAQIEHYQNERDFPAKPGTSQLSAYLAAGVISPRQCLHAALNSNQGEFESGNTGAVTW 275
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+++L+WR+FY+ IL YP V +++F+ E + + W A W + TG P+ID+
Sbjct: 276 INELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APDELAAWQQARTGLPIIDA 332
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+
Sbjct: 333 AMRQLLATGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSST 392
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G S P+FRIFNP+ QS+KFD +G+FI+++LP+L+ L+ K +H+P G+
Sbjct: 393 GTDSAPYFRIFNPLSQSEKFDPEGVFIKQWLPELAGLNKKDVHNP-------ANLGGLFG 445
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
G +YP PI++ S S+ L + KN+ +R
Sbjct: 446 GVDYPSPIVDLSTSRTRALTAF---KNLPSRQ 474
>gi|76802655|ref|YP_330750.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
gi|76558520|emb|CAI50112.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
Length = 462
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/463 (31%), Positives = 240/463 (51%), Gaps = 33/463 (7%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
+F+FD+ +LD R+ F+ ++ L ++ S+L IR + + L
Sbjct: 28 LFVFDEAVLDHAAPP------RVAFLLDALSSLRAAYRDRGSELFIRRGDPANVLSALAD 81
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L +D V N DY A RD + L +G + D + I G PYS++
Sbjct: 82 DLGVDVVSWNRDYSGLAADRDDRVADVLDEVGVTPQRFHDAICHPPGTITTNAGDPYSVY 141
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
S++ KKW ++ K + YPV + + ++ + +L DLGF +
Sbjct: 142 SYFWKKWRDREKDDP-----YPVPALADATDETT---------LPTLADLGFDEPTAEL- 186
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
K G + A+ L F++ I Y R+YP+ TS LS L+FGTI IR + K + +
Sbjct: 187 -PKAGTAPARGRLAAFLEDDIYRYEEARDYPATECTSRLSADLKFGTIGIRAVDKQVREA 245
Query: 245 IKKHYKTDCI--GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
I +TD + SQL WR+FY +L P VV +++K+ +I WE D +
Sbjct: 246 IAA-AETDSERESAAEFRSQLAWREFYTHVLAFNPEVVTENYKRYEHDIDWEDD---PEL 301
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
W +G TGYP++D+ + QL + YMHNR+RM+ ASFL K++ I+W+ G +F ++L D
Sbjct: 302 LAAWKRGETGYPIVDAGMRQLQAEAYMHNRVRMIVASFLTKDLLIDWRHGYAHFRDRLVD 361
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D +IR+Y+P+LS + IHS
Sbjct: 362 HDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIREYVPELSGVEADVIHS 421
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ S + A YP+P+++HS ++ L + +
Sbjct: 422 WHELSPTQRANA----APEYPQPVVDHSQRREQALDMFEQARG 460
>gi|288553212|ref|YP_003425147.1| deoxyribodipyrimidine photolyase PhrB [Bacillus pseudofirmus OF4]
gi|298286845|sp|Q04449.2|PHR_BACPE RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|288544372|gb|ADC48255.1| Deoxyribodipyrimidine photolyase, FAD-binding PhrB [Bacillus
pseudofirmus OF4]
Length = 479
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/445 (32%), Positives = 241/445 (54%), Gaps = 19/445 (4%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL-NIDAV 72
LDP + +E ++ F+++++ L+ DL I + KL+ IDAV
Sbjct: 44 LDPKTAS--VEPVHHDYFFQTVMQFKQMLKTNGGDLYIITGTIEGALSKLLQAFPEIDAV 101
Query: 73 MINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKW 132
N D +RD+ + L F++++D + E +++L K G PY +F+ Y K W
Sbjct: 102 YANDDRVGDGRLRDEAAEHFLAKQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAW 161
Query: 133 IEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGAS 192
++ K ++ + ++ + + + NN+I C + S++G +
Sbjct: 162 AKERKRTPAVIKRDVLLGSVHKGTAPDREAETLFNNLIKK-----CSYDWSAIGEEHAIK 216
Query: 193 GAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
++ K++ Y NR++PSI GTS LS +++ G +S R + I Y +
Sbjct: 217 RLQMFTK---KRLSGYKANRDFPSITGTSRLSPYIKTGAVSSRSIYYHILNAEADSYSAE 273
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
T+L +L WRDFY+M+ + P+ ++ + Y + W D + + +W +G TG
Sbjct: 274 -----TFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHD---QDDLTSWKRGETG 325
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
+P++D+ + QL + G+MHNRLRM+TASFL K++ I+W+ GE YF L D+D +SN G W
Sbjct: 326 FPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGW 385
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QW+AS G + P+FRIFNP+ QSK+FD G +IR Y+P+L+ + + YIH PWK S +
Sbjct: 386 QWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKMSEEEQV 445
Query: 433 KAGIILGKNYPKPILEHSLSKKNIL 457
K L ++YP PI++HS +K L
Sbjct: 446 KYKCRLDEDYPLPIVDHSKQRKKAL 470
>gi|427718644|ref|YP_007066638.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 7507]
gi|427351080|gb|AFY33804.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 7507]
Length = 495
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/472 (33%), Positives = 245/472 (51%), Gaps = 31/472 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D +IL+ + + R+ ++ + L S L+I +A I
Sbjct: 48 VVGVFCLDPHILE----RDDVAPVRVTYMIGCLQALQQRYAEAGSQLLILHADPVVAIPA 103
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L LN AV N D EP + RD+ + LK G F DQ++ +EI P
Sbjct: 104 LAEALNAKAVFWNWDVEPYSQERDRTVIDALKEQGIAFLQQNWDQILNAPDEIRTGGNSP 163
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIIN----NNIISLNDLGF 177
Y++++ + K W K K+ P ++ N ++ +I + + DLGF
Sbjct: 164 YTVYTPFWKNWSSKPKAQ-------PAQTLQNAEGLTADEQEIAKKVGAQPLPTAKDLGF 216
Query: 178 CKSNLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
L I G + A+ LL F I Y RN+P+I GTS LS L+FG I IR
Sbjct: 217 IWDG--ELIIAPGEAAARSLLEEFCASSINEYQEQRNFPAIEGTSKLSAALKFGAIGIRT 274
Query: 237 LVKLIFKFIKKHYKTDC-IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + ++ + G TW +L WR+FYQ +Y +P + + ++++ + N WE+
Sbjct: 275 VWQATLEALENSRSDEAKAGIRTWQQELAWREFYQHAMYNFPELADGAYRETFKNFPWEN 334
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ + F WC+G TGYP++D+A+ Q+N SG+MHNR RM+ ASFL K++ IN +WGE Y
Sbjct: 335 NT---EKFQAWCEGNTGYPIVDAAMRQMNESGWMHNRCRMIVASFLTKDLLINPQWGEKY 391
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F +L D DL++NNG WQWSASSG +P RIFNP Q++KFD +G +IR+++ +L L
Sbjct: 392 FMQQLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDAEGEYIRQWVQELRSL 450
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+Y+ + LE+ + +YP+PI++H ++ RY K L
Sbjct: 451 DTEYLVT---GKIPPLERHAV----DYPQPIVDHKQQQQEFKNRYQQQKAYL 495
>gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str.
Manfredo]
gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
str. Manfredo]
Length = 469
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 250/465 (53%), Gaps = 35/465 (7%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CVF F+K L+ L S R S++ L+ DL + Y ++L+
Sbjct: 31 CVFQFNKEQLNLLHS------RNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCFEQLL 84
Query: 65 IKL-NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYS 123
+L + V N+D +RD+ + K G +Y+D + EI+N++G+PY
Sbjct: 85 TQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYK 144
Query: 124 IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS 183
+F+ Y + W Q+YP ++ + + + N+ + +D+ ++
Sbjct: 145 VFTPYYRIW-----------QNYPKETPIKVELSQGRWL-----NLETPDDVLRTVESIK 188
Query: 184 SLGIKTGAS--GAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ A+ A LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR +
Sbjct: 189 DEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHA 248
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + + +G T+L +L WRDFY M+ YP+ + +K + I W ++
Sbjct: 249 VRQ------APNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---P 299
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W +G TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE YF +L
Sbjct: 300 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQL 359
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D+D ASN G WQW+AS+G + P+FRIFNP+ QSK+FD +G FI+ YLPQL + KY+
Sbjct: 360 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQSKRFDPKGEFIKAYLPQLEHVPEKYL 419
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
H PWK Y E I+G +YP+PI++H+ ++ + +Y + K
Sbjct: 420 HEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKE 464
>gi|289678393|ref|ZP_06499283.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
FF5]
Length = 482
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 250/452 (55%), Gaps = 39/452 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + KL + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K ++ G F SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQ-----SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGA 194
CY + YPV++ S I ++++ GF + + + G + A
Sbjct: 156 CYTRLHEAMPYPVRTPKAQPAQS------IKSDVVPDQVKGFAMPSKALRDLWPAGEAEA 209
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
+ ++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T
Sbjct: 210 RRRMDTFADEQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGD 269
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+G TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG
Sbjct: 270 VGTVTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELRAWQEARTG 326
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
P+ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG W
Sbjct: 327 LPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGW 386
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QWS+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ ++ K IH P
Sbjct: 387 QWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP--------S 438
Query: 433 KAGIILG-KNYPKPILEHSLSKKNILKRYNFI 463
G + G +YPKPI++ S S+ L + +
Sbjct: 439 LIGDLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|417856580|ref|ZP_12501639.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|387933535|gb|EIK41648.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 469
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 245/463 (52%), Gaps = 31/463 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CVF F+K L+ L S R S++ L+ DL + Y ++L+
Sbjct: 31 CVFQFNKEQLNLLHS------RNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCFEQLL 84
Query: 65 IKL-NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYS 123
+L + V N+D +RD+ + K G +Y+D + EI+N++G+PY
Sbjct: 85 TQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYK 144
Query: 124 IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS 183
+F+ Y + W Q+YP ++ + + + + + + F
Sbjct: 145 VFTPYYRIW-----------QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQ 193
Query: 184 SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ AS LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR + +
Sbjct: 194 DVATFDEASKQ---LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 250
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + +G T+L +L WRDFY M+ YP+ + +K + I W ++
Sbjct: 251 Q------APNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---PDW 301
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE +F +L D
Sbjct: 302 FQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQHFQQQLID 361
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D ASN G WQW+AS+G + P+FR+FNP+ QSK+FD +G FI+ YLPQL + KY+H
Sbjct: 362 YDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFDPKGEFIKAYLPQLEHVPEKYLHE 421
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PWK Y E I+G +YP+PI++H+ ++ + +Y + K
Sbjct: 422 PWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKE 464
>gi|398985069|ref|ZP_10690896.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM24]
gi|399013272|ref|ZP_10715582.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM16]
gi|398114211|gb|EJM04043.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM16]
gi|398154672|gb|EJM43138.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM24]
Length = 488
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/451 (34%), Positives = 251/451 (55%), Gaps = 30/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ ELS +L + L+IR A A E+ KL +L I AV N +Y
Sbjct: 54 KVDFWLRNLRELSASLGKLNIPLLIRTATHWDQAPAELLKLCRQLKIAAVHANEEYGVHE 113
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + LK G F SY DQ++F+ +L KT + +FS ++K E++ +
Sbjct: 114 SRRDAAVGETLKAEGITFHSYLDQLLFKPGSVLTKTESYFKVFSQFRKVCYERLHRSMPA 173
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
L P K KL ++++ I + GF + + + G + A+ L+ F
Sbjct: 174 LVKAPGKQ--------EKLE--LSSDPIPDSVKGFSTPSQTLRDLWPAGENEARRRLDTF 223
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+I Y R++P+ GTS LS +L G IS R+ + + + +++ +G TW+
Sbjct: 224 TDAQIDYYQSERDFPAKPGTSQLSAYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTWI 283
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W A + W + TG P+ID+A
Sbjct: 284 NELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APDDLAAWQEARTGLPIIDAA 340
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 341 MRQLLETGWMHNRLRMIVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTG 400
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS+KFD +G+FI+ +LP+L+ L+ K +H+P G+
Sbjct: 401 TDSAPYFRIFNPLSQSEKFDSEGLFIKHWLPELAGLNKKEVHNP-------ANLGGLFGA 453
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP PI+ S S++ L + KN+ +R
Sbjct: 454 ADYPSPIVNLSTSRQRALAAF---KNLPSRT 481
>gi|408785938|ref|ZP_11197678.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
gi|408488127|gb|EKJ96441.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
Length = 479
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 239/436 (54%), Gaps = 14/436 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L L+ S L++ A + +++L+ + D V N Y+P+ I DK +
Sbjct: 54 WLHHSLTALHAALKKTGSRLVLASGDAEEVLRRLIAETGADTVFWNRRYDPEGISTDKTL 113
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K+ L+ G S+ ++ E +++ K+G PY +++ + + +E + +
Sbjct: 114 KRALRDEGLTVRSFSGHLLHEPSKLQTKSGGPYRVYTPFWRA-LEGGEEPHAPADAPDRL 172
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNY 208
+ N S L + + D S++ + G GA+ L++FI +K Y
Sbjct: 173 NTPRNWPRSETLDEW--QLLPKRPDWAREFSDIWT----PGEDGAREKLSDFIDGALKGY 226
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDF 268
R+ P+ + TS LS HL G IS V K + +H ++ I F +++WR+F
Sbjct: 227 EEGRDLPAKDATSRLSPHLALGEISP-ATVWHATKGLSRHIASNDISRFR--KEIVWREF 283
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGY 328
+L+ +P + K++ +D W D+ K+F W +G TGYP++D+ + QL G
Sbjct: 284 CYHLLFHFPELDEKNWNDSFDAFSWRDDD---KSFTAWTRGMTGYPIVDAGMRQLWRHGT 340
Query: 329 MHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRI 388
MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D ASN NWQW A SG + PFFRI
Sbjct: 341 MHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRI 400
Query: 389 FNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
FNPI+Q +KFD G ++R+++P+L++L KYIH P++A L KAGI LG+ YP P+++
Sbjct: 401 FNPILQGEKFDGDGDYVRRFVPELARLERKYIHKPFEAPKEVLTKAGITLGETYPNPVVD 460
Query: 449 HSLSKKNILKRYNFIK 464
H +++ L Y +K
Sbjct: 461 HGRARERALAAYARVK 476
>gi|94988861|ref|YP_596962.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
gi|94992751|ref|YP_600850.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
gi|94542369|gb|ABF32418.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
gi|94546259|gb|ABF36306.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
Length = 480
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 245/463 (52%), Gaps = 31/463 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CVF F+K L+ L S R S++ L+ DL + Y ++L+
Sbjct: 42 CVFQFNKEQLNLLHS------RNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCFEQLL 95
Query: 65 IKL-NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYS 123
+L + V N+D +RD+ + K G +Y+D + EI+N++G+PY
Sbjct: 96 TQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYK 155
Query: 124 IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS 183
+F+ Y + W Q+YP ++ + + + + + + F
Sbjct: 156 VFTPYYRIW-----------QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQ 204
Query: 184 SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ AS LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR + +
Sbjct: 205 DVATFDEASKQ---LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 261
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + +G T+L +L WRDFY M+ YP+ + +K + I W ++
Sbjct: 262 Q------APNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---PDW 312
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE +F +L D
Sbjct: 313 FQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQHFQQQLID 372
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D ASN G WQW+AS+G + P+FR+FNP+ QSK+FD +G FI+ YLPQL + KY+H
Sbjct: 373 YDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFDPKGEFIKAYLPQLEHVPEKYLHE 432
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PWK Y E I+G +YP+PI++H+ ++ + +Y + K
Sbjct: 433 PWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKE 475
>gi|344924235|ref|ZP_08777696.1| deoxyribodipyrimidine photo-lyase [Candidatus Odyssella
thessalonicensis L13]
Length = 473
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 234/408 (57%), Gaps = 29/408 (7%)
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L+ + AV+ N Y P+ I D IK EL+ G S+ ++FE EI N GK
Sbjct: 79 ELIKQTQATAVVWNRRYGPEEIAVDTRIKTELEARGIGVKSFNSHLLFEPWEIQNNQGKF 138
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF--CK 179
+ +F+ + KK + + + P+ + + ++++ L LG K
Sbjct: 139 FQVFTPFWKKCLARARIEP----PLPIPANM----------QLMSGATFDLKKLGLLPTK 184
Query: 180 SNLSSLGIK----TGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
+ +S G++ G GA+ L NFI +I Y NRNYP+ TS LS HL +G IS+R
Sbjct: 185 PDWAS-GLRQTWTPGEVGAQQKLANFISRIAGYKQNRNYPAQQATSLLSPHLAWGEISVR 243
Query: 236 KLVKLIFKFIKKH--YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
+L I I+ + + D + + LS++ WR+F +LY P + ++++ N W
Sbjct: 244 QLWHAIHTQIRLYPVLEQDALNF---LSEIGWREFSYHLLYHVPTLPTHPLRQQFANFPW 300
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
+ D A + W +G TGYP+ID+ + +L +GYMHNR+RM+ ASFL+K++ ++W+ GE
Sbjct: 301 QQDENALRK---WSQGQTGYPIIDAGMRELWHTGYMHNRVRMIVASFLVKDLLLSWQQGE 357
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
+F + L D DLA+N+ +WQW A G + P+FR+FNP++Q +KFD +G ++++++P+L
Sbjct: 358 AWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQGEKFDPEGEYVKRWVPELD 417
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
LS YIH PW+AS+ KL+ AGI LG YP P+++H ++ L+ Y
Sbjct: 418 LLSADYIHKPWQASAIKLKGAGIELGVTYPFPMVDHEKARHRALEIYQ 465
>gi|344341302|ref|ZP_08772223.1| Deoxyribodipyrimidine photo-lyase [Thiocapsa marina 5811]
gi|343798882|gb|EGV16835.1| Deoxyribodipyrimidine photo-lyase [Thiocapsa marina 5811]
Length = 481
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 233/440 (52%), Gaps = 21/440 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ + LQ + + L+I A E++++V + N Y+P RD I
Sbjct: 54 WLHGSLASMDQALQTFGTGLLIARGDALAELRRIVAATGATRIHWNRLYDPTTRDRDGRI 113
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K+ L+ G + S+ ++FE EI TG+PY +F+ + ++ C + V
Sbjct: 114 KQALRADGLRAESHNASLLFEPWEIATGTGEPYRVFTAFWRR---------CGARLSDVG 164
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK----TGASGAKILLNNFIK-K 204
+ + + L +L G++ G + A F++ +
Sbjct: 165 PLPAPTTLPPPPE---SPDSLPLENLALLPRIPWDTGLRETWTPGETAALEQARAFVQGR 221
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
I+ Y R+ P++ GTS LS HL FG I R+++ ++ + D + F + ++
Sbjct: 222 IQGYASARDLPALAGTSALSSHLHFGEIGPRRVLAMVREQWDDP-TADPVETF--VREIG 278
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
WR+F ++Y YP+ ++ + + + W ++ A + W +G TG PL+D+ + QL
Sbjct: 279 WREFAHHLIYHYPHTTDEPLDRRFAALPWREED-ADRLLRAWQRGETGIPLVDAGMRQLW 337
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
+G+MHNR+RMV ASFL KN+ + W+ G +F + L D DLA+N+ WQWSA G + P
Sbjct: 338 HTGWMHNRVRMVVASFLTKNLRLPWQAGARWFWDTLVDADLAANSLGWQWSAGCGADAAP 397
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNP++Q ++FD G ++R++ P+L++L +KYIH PW A S LE AGI LG++YP
Sbjct: 398 YFRIFNPVLQGERFDKSGAYVRRWCPELARLPDKYIHQPWTAPSALLEHAGIRLGRDYPA 457
Query: 445 PILEHSLSKKNILKRYNFIK 464
PI++ S++ L Y +K
Sbjct: 458 PIVDLKASREAALAAYEVVK 477
>gi|350532818|ref|ZP_08911759.1| deoxyribodipyrimidine photolyase [Vibrio rotiferianus DAT722]
Length = 471
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 254/456 (55%), Gaps = 36/456 (7%)
Query: 9 FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLN 68
+ ++ + P+++ I RR+ + + + EL+I L + + +++ ++ IK I LN
Sbjct: 39 WQEHHMAPMQADLIA--RRLMHLEEELTELNIPLLYKE---VPKFSDVTEVIKGWAISLN 93
Query: 69 IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFY 128
++VM N YE + D+ + + L F ++ D+ I +LNK G + +F+ +
Sbjct: 94 AESVMANIHYEVNEQVLDREVSEVLAKSDVTFEAFHDKCIHAPPTVLNKQGDYFKVFTPF 153
Query: 129 QKKWIEKVKSNKCYLQSYPVKSYLNNL--VHSSKLHKIINNNIISLNDLGFCKSNLSSLG 186
++ W+ K + + +K + L V + + H D+ F SS
Sbjct: 154 KRAWLAKFQMPMVWKPEPQLKLSDDALKPVETDRYHA----------DVVFSYPRDSSE- 202
Query: 187 IKTGASGAKIL--LNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFK 243
+ AS +IL L F ++ + Y R+ P+ +GTS LS +L G +S R+ + ++
Sbjct: 203 -QWHASTGEILNRLREFARERSDAYKAERDRPAADGTSQLSPYLAIGALSSRQCIARLYA 261
Query: 244 FIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKN 302
T+ G TWLS++IWR+FYQ +L P +V K F D I W D A
Sbjct: 262 ESPHSELTE--GKATWLSEIIWREFYQHLLVFEPKLVKGKGFIPWEDKIEWSYDETA--- 316
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W G TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D
Sbjct: 317 FERWKTGTTGYPIVDAAMRQLNETGWMHNRLRMIVASFLTKDLHIDWRWGEAYFMSKLVD 376
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
D A+NNG WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ ++ NK+IH+
Sbjct: 377 GDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGTFVRHWVPEIKEVPNKFIHN 436
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILK 458
PW SS+ L +Y KP+++H + ++ L+
Sbjct: 437 PWLWSSFNL--------LDYHKPMVDHKVEREITLR 464
>gi|423099697|ref|ZP_17087404.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
gi|370793782|gb|EHN61607.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
Length = 467
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 160/437 (36%), Positives = 238/437 (54%), Gaps = 26/437 (5%)
Query: 31 IFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNI-DAVMINHDYEPQAIIRDKLI 89
F S+ L N +S L I + + +K+L K+ D V N D RD+
Sbjct: 49 FFASVAHFQQEL-NRNSHLQIMFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAA 107
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
+ SY D + E+ + Y IF+ Y KKW E++K P+K
Sbjct: 108 RAFFADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKE-------MPLK 160
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNY 208
L K KI ++ + F + +G A L NF+K+ + +Y
Sbjct: 161 VTL-------KPEKIRKESLFPNYEEQFRELIQDLPAFDSGEKAANTRLANFVKEDLADY 213
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDF 268
+ R+ P+++ TS+LS +LR G ISIR +++ ++K T+ G T+ +L WRDF
Sbjct: 214 DKARDVPALDKTSHLSRYLRTGEISIR----TVWQALQKEEATE--GRATFEKELCWRDF 267
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGY 328
Y MI +P N+ ++ Y I WE++ ++ F W G TG+PL+D+A+ QL +G+
Sbjct: 268 YNMIYVSFPKQKNEPIQENYRFIEWENN---REFFKKWQDGQTGFPLVDAAMRQLKETGW 324
Query: 329 MHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRI 388
MHNRLRM+TASFL K++ I+W++GE YF L D+D ASN G WQW+AS+G + P+FRI
Sbjct: 325 MHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRI 384
Query: 389 FNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
FNP QS+KFD G FIRKY+ +L L NK+IH P K S + ++ G+ILGK+YP PI++
Sbjct: 385 FNPTTQSEKFDPDGTFIRKYVKELQDLPNKFIHQPEKMSETEQKEHGLILGKDYPFPIID 444
Query: 449 HSLSKKNILKRYNFIKN 465
H +K + RY F K
Sbjct: 445 HKERRKLAIARYEFSKE 461
>gi|160876317|ref|YP_001555633.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195]
gi|378709517|ref|YP_005274411.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS678]
gi|418024064|ref|ZP_12663048.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS625]
gi|160861839|gb|ABX50373.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195]
gi|315268506|gb|ADT95359.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS678]
gi|353536937|gb|EHC06495.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS625]
Length = 499
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 216/370 (58%), Gaps = 19/370 (5%)
Query: 97 GCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLV 156
G ++ + + +LN +G Y +F+ + +KW E + + L PV + L ++
Sbjct: 142 GIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWRE-IAARHAIL-PLPVPAPLGPVL 199
Query: 157 HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYP 215
K H + NN+ + +SS G AK +L+ FI+ K+++Y +R++P
Sbjct: 200 TEPKPH--LFNNV----------TKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 247
Query: 216 SINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYC 275
+I+GTS +S +L G +S R+ V + + D TWL++L WR+FY+ +L
Sbjct: 248 AIDGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVA 307
Query: 276 YPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLR 334
+P++ N +F ++ D++ W ++ ++ F WC+G TGYP++D+A+ QLN +G+MHNRLR
Sbjct: 308 FPDLSKNYNFNRQADHVQWRNN---QQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLR 364
Query: 335 MVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQ 394
MV ASFL K++ I+W+WGE F KL D DLA+NNG WQWSA GC +QP+FRIFNP+ Q
Sbjct: 365 MVVASFLTKHLLIDWRWGERNFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQ 424
Query: 395 SKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKK 454
S+KFD G FIRKYLP+L+ K +H P A + L + YP I+EHS ++
Sbjct: 425 SEKFDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARA 484
Query: 455 NILKRYNFIK 464
L +K
Sbjct: 485 RALTVLGVLK 494
>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 518
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 258/468 (55%), Gaps = 33/468 (7%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
+F D +IL+ Q + RI ++ + +L + Q L+I ++ I ++
Sbjct: 76 LFCLDTDILN----QDNVAPARITYMLGCLQDLRESYQQLGGQLLIFQGNPTQIIPQVAD 131
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG-KPYSI 124
L +D V N+D EP + RD + + L+ G +Y DQ++ +IL K+ PY +
Sbjct: 132 ALKVDCVFWNNDVEPYSKKRDNQVIEALQERGIHSQTYWDQLLHAPGDILTKSNNAPYKV 191
Query: 125 FSFYQKKWIEKVKSNKCYLQSYPVKSYLNNL--VHSSKLHKIINNNIISL---NDLGFCK 179
++ + + W+++ K+N + L L + +++ + N II L DLG+
Sbjct: 192 YTPFWRSWLKEEKAN--------IAQALGKLESLSEEEINTVKNLGIIDLPTAKDLGY-- 241
Query: 180 SNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
S + L ++ G + AK LN F I NY RNYP INGTS LS +FG I IR++
Sbjct: 242 SWDAPLILEPGETAAKEQLNYFCDSLIYNYQEQRNYPGINGTSTLSPAFKFGVIGIREVW 301
Query: 239 KLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + Y + TW ++ WR+FYQ +Y +P + +++E+ + W+++
Sbjct: 302 QATLSAYENTYSDEARENIQTWQQEIAWREFYQHCMYFFPELATGPYRQEFKDFSWDNN- 360
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+++F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 361 --EQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFM 418
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D DL++NNG WQWSASSG +P RIFNP Q++K+D G +IR ++P++S L
Sbjct: 419 QKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDPDGEYIRLWVPEISSLDT 477
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+Y+ + K + G Y +PI++H ++ +RY IKN
Sbjct: 478 EYLVTG-KIPPLEAHSCG------YLQPIVDHKQQQREFKERYKQIKN 518
>gi|418296029|ref|ZP_12907873.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539461|gb|EHH08699.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 479
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 243/448 (54%), Gaps = 38/448 (8%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ LS L+ S L++ A + +++L+ + DAV N Y+P + DK +
Sbjct: 54 WLHHSLACLSAALEKTGSRLVLASGDAGETLRQLISETGADAVFWNRRYDPAGMATDKAL 113
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKW------------IEKVK 137
K++L+ G S+ ++ E + + K+G PY +++ + + + +K
Sbjct: 114 KQKLRDDGLTVRSFSGHLLHEPSRLQTKSGGPYRVYTPFWRALEGGEEPHAPADAPKSLK 173
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ K +L+S + + KL + +D+ G GA+
Sbjct: 174 APKAWLESEKLSDW--------KLLPTKPDWAKHFSDI-----------WAPGEGGAQEK 214
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L++FI +K Y R++P+ + TS LS HL G IS V K + +H ++ I
Sbjct: 215 LDDFIDGALKGYEEGRDFPAKDATSMLSPHLALGEISP-ATVWHATKGLSRHIASNDISR 273
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
F +++WR+F +L+ +P + K++ + +D W D + +F W +G TGYP++
Sbjct: 274 FR--KEIVWREFCYHLLFHFPGLDEKNWNESFDAFGWRDD---ETSFKAWTRGMTGYPIV 328
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+ + QL G MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D ASN NWQW A
Sbjct: 329 DAGMRQLWKHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVA 388
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
SG + PFFRIFNPI+Q +KFD G ++R+++P+L KL KYIH P++A L+KAGI
Sbjct: 389 GSGADASPFFRIFNPILQGEKFDADGNYVRRFVPELEKLDRKYIHKPFEAPKEVLKKAGI 448
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
LGK YP PI++H +++ L Y +K
Sbjct: 449 ELGKTYPLPIVDHGKARERALAAYAEVK 476
>gi|118364198|ref|XP_001015321.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila]
gi|89297088|gb|EAR95076.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila SB210]
Length = 472
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 152/407 (37%), Positives = 236/407 (57%), Gaps = 36/407 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFDK+IL+ L + +D R+EFI + ++ NL+ + S ++++++ A K
Sbjct: 45 VVPLFIFDKDILNELEDK---KDCRVEFIHNYLSQMQDNLRKHGSTMVVKHSNAESAFKS 101
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + +I V N DYEP A RD+ IK+ L G F +KDQVIFE E+ G +
Sbjct: 102 LMEEFDISCVFTNRDYEPYAKKRDQQIKEILNSKGIGFKDFKDQVIFEAKEVHQDDGSAF 161
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ + KKWI + S Y QSY +S +NN S + +L +GF K+
Sbjct: 162 KVYTPFSKKWI-SLLSEPDY-QSYKSESLMNNYWKSQ-----VEVPFPTLEQIGFQKT-- 212
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
GI+ S L +KNY+ R+YP I TS +S+HLRFGT+SIR+LV+
Sbjct: 213 ---GIEFPPSQLDEEL------VKNYDKTRDYPHIK-TSLMSVHLRFGTVSIRELVRKAV 262
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+K+ L +L WR+F+ M++ +P ++FKK Y+ + W ++ +
Sbjct: 263 LLNQKY-----------LDELCWREFFMMMIDQFPLFATENFKKAYNKVEWRNN---PEE 308
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F WC+G TGYPL+D+ + QLN +GY+ N+LRM+ ASFL KN+ I+W+WGE YFA KL D
Sbjct: 309 FKAWCEGKTGYPLLDAGMRQLNKTGYLPNKLRMIAASFLTKNLLIDWRWGERYFAQKLID 368
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYL 409
+DLA+N G WQW SG P+ R+ +P++Q KK+D +++ ++
Sbjct: 369 YDLAANVGGWQWVNGSGTDQAPYIRVLDPVMQQKKYDPDFKYVKTWV 415
>gi|116617921|ref|YP_818292.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096768|gb|ABJ61919.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 470
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/393 (37%), Positives = 226/393 (57%), Gaps = 29/393 (7%)
Query: 75 NHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIE 134
N D + A DKL K Y D + E+ +G Y +F+ Y K+WI
Sbjct: 105 NRDQKSVAFFEDKL--------KVKAHPYIDYNLHGATEVKKDSGAGYKVFTPYFKRWIR 156
Query: 135 KVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGA 194
+ K PV ++ + S++L N ++ F S + G+ A
Sbjct: 157 QEKP-------APVSYVIDKRIKSARLLFPENEQLLET----FIDDRFSFIKKDLGSETA 205
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
K +LN FI + + Y+ R++P+ + TS+LS +LR G ISIR + + I + D
Sbjct: 206 KKVLNRFINESLDQYDEERDFPANDSTSHLSRYLRTGEISIRTVWRAIDQ------SPDS 259
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
G T++ +L WRDFY MI YPN +S K++ ++ W ++ ++ F W G TG+
Sbjct: 260 DGKSTFMKELCWRDFYNMIYVMYPNQNVESVNKDFRHVDWINN---EQQFEAWRTGQTGF 316
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
P++D+A+ QLN++G+MHNRLRM+ ASFL K++ I+W+WGE YF NKL D+D ASN G WQ
Sbjct: 317 PIVDAAMRQLNATGWMHNRLRMIVASFLTKDLLIDWRWGEAYFHNKLLDYDAASNIGGWQ 376
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEK 433
W+AS+G S P+FRIFNP +QSKKFD G+FI+KY+P+L + NK IH P K S + +
Sbjct: 377 WAASTGTDSVPYFRIFNPTLQSKKFDSNGLFIKKYVPELKNVDNKMIHEPGKLSESEQTR 436
Query: 434 AGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ +G+NYP PI++HS ++K + Y K++
Sbjct: 437 FNVRIGQNYPFPIVDHSYARKRAISIYESSKDV 469
>gi|407687838|ref|YP_006803011.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407291218|gb|AFT95530.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 476
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 154/407 (37%), Positives = 237/407 (58%), Gaps = 14/407 (3%)
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
I KL+ N + N YEP I RDK IKK L + S +++E ++L K G
Sbjct: 81 IPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHDYEAHSCNGSLLWEPMKVLKKDG 140
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFC 178
PY +F+ Y KK +V+ + Y ++ P + ++ + S + + +++ ++N
Sbjct: 141 TPYRVFTPYYKKGCLQVEEPR-YPKAPPARITYADVDNDSDSDGLTSLDLLPTINWDATI 199
Query: 179 KSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ S G GA L +FI+ + Y R+ PS NGTS LS HL FG +S ++
Sbjct: 200 EKEWSP-----GEDGAADNLADFIENSARKYKDGRDIPSANGTSRLSPHLHFGEVSPNQV 254
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ K ++ T+LS+L WR+F +L+ +P + NK+F +++D W +D
Sbjct: 255 ---WYAIKDKFGNSEDKSIETYLSELGWREFSYYLLFHFPTLPNKNFNEKFDKFPWRTDA 311
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A K W KG TG P++D+ + +L +GYMHNR+RM+ SFL+KN+ ++W GE +F
Sbjct: 312 KALKA---WQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNLLLSWHEGERWFW 368
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+ L D DLASN+ +WQW A SG + P+FRIFNPI+Q +KFD +G ++RKY P+L+KLS+
Sbjct: 369 DTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGNYVRKYCPELNKLSD 428
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
KYIH PW+A S L+ AGI LGK YPKPI++ S++ L + +K
Sbjct: 429 KYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAFQTLK 475
>gi|416411130|ref|ZP_11688696.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260360|gb|EHJ09791.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 518
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 258/468 (55%), Gaps = 33/468 (7%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
+F D +IL+ Q + RI ++ + +L + Q L+I ++ I ++
Sbjct: 76 LFCLDTDILN----QDNVAPARITYMLGCLQDLRESYQQLGGQLLIFQGNPTQIIPQVAD 131
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG-KPYSI 124
L +D V N+D EP + RD + + L+ G +Y DQ++ +IL K+ PY +
Sbjct: 132 ALKVDCVFWNNDVEPYSKKRDNQVIEALQERGIHSQTYWDQLLHAPGDILTKSNNAPYKV 191
Query: 125 FSFYQKKWIEKVKSNKCYLQSYPVKSYLNNL--VHSSKLHKIINNNIISL---NDLGFCK 179
++ + + W+++ K+N + L L + +++ + N II L DLG+
Sbjct: 192 YTPFWRSWLKEEKAN--------IAQALGKLESLSEEEINTVKNLGIIDLPTAKDLGY-- 241
Query: 180 SNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
S + L ++ G + AK LN F I NY RNYP INGTS LS +FG I IR++
Sbjct: 242 SWDAPLILEPGETAAKEQLNYFCDSLIYNYQEQRNYPGINGTSTLSPAFKFGVIGIREVW 301
Query: 239 KLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + Y + TW ++ WR+FYQ +Y +P + +++E+ + W+++
Sbjct: 302 QATLSAYENTYSDEARENIQTWQQEIAWREFYQHCMYFFPELATGPYRQEFKDFSWDNN- 360
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+++F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 361 --EQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFM 418
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D DL++NNG WQWSASSG +P RIFNP Q++K+D G +IR ++P++S L
Sbjct: 419 QKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDPDGEYIRLWVPEISSLDT 477
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+Y+ + K + G Y +PI++H ++ +RY IKN
Sbjct: 478 EYLVTG-KIPPLEAHSCG------YLQPIVDHKQQQREFKERYKQIKN 518
>gi|296110301|ref|YP_003620682.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
gi|339490544|ref|YP_004705049.1| hypothetical protein LGMK_01830 [Leuconostoc sp. C2]
gi|295831832|gb|ADG39713.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
gi|338852216|gb|AEJ30426.1| hypothetical protein LGMK_01830 [Leuconostoc sp. C2]
Length = 478
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/385 (38%), Positives = 229/385 (59%), Gaps = 22/385 (5%)
Query: 85 RDKLIKKELKV-IGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYL 143
RD++I K + + + D + ++I G Y +F+ Y K+W+ VKSN
Sbjct: 108 RDQVITKYCQEKLNISVHATMDYNLHAAHDIKKADGHYYQVFTPYFKRWMTLVKSN---- 163
Query: 144 QSYPVKSYLNNLVHSSKLHKIINN-NIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
P+ L N+ S+ H ++ S+ D + + + + G A+ +L++FI
Sbjct: 164 ---PITIDLTNI---SQEHLTVSTLEQDSMLDALIDEKHSYAYVDQIGEDKARKILSDFI 217
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ K+ Y+ NR+ PS++ TS+LS +LR G ISIR ++++ IK+ D G T++
Sbjct: 218 ENKLTQYDQNRDVPSLDATSHLSRYLRTGEISIR----VVYEGIKQ--APDSDGRSTFIK 271
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+L WRD+Y MI +P + + E+ I W D K F +W G+TG+P++D+A+
Sbjct: 272 ELCWRDYYNMIYATHPQQNESAIRPEFRQIRWRDD---KIGFDDWQTGHTGFPIVDAAMR 328
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
QLN +G+MHNRLRM+ ASFL K++ INW+WGENYF KL D+D ASN G WQW+AS+G
Sbjct: 329 QLNETGWMHNRLRMIVASFLTKDLLINWQWGENYFKQKLVDYDPASNIGGWQWAASTGTD 388
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
S P+FRIFNP +QSKKFD QG+FI+KY+P+L ++ IH P K SS ++ I +G +
Sbjct: 389 SVPYFRIFNPTLQSKKFDPQGLFIKKYIPELKRIPGAKIHEPNKLSSIDQKRYHISIGHD 448
Query: 442 YPKPILEHSLSKKNILKRYNFIKNI 466
YPKPI+ H ++ N + Y K +
Sbjct: 449 YPKPIVNHKTARINAIAAYEKSKTM 473
>gi|416014635|ref|ZP_11562385.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. B076]
gi|416029112|ref|ZP_11572001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422406636|ref|ZP_16483660.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320325702|gb|EFW81763.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327379|gb|EFW83393.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881872|gb|EGH16021.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 482
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 248/448 (55%), Gaps = 31/448 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L +L I+ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K L+ G + SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL--GFCKSNLSSLGI-KTGASGAKIL 197
CY + + + V + K + ++ S+ D GF + + + G + A+
Sbjct: 156 CYNRMH---QAMPQPVRTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLWPAGEAEARRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F +I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 MATFADAQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGLFIKRWLPELADLNKKQIHDP-------ASIGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|381336398|ref|YP_005174173.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|356644364|gb|AET30207.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 470
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/393 (37%), Positives = 226/393 (57%), Gaps = 29/393 (7%)
Query: 75 NHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIE 134
N D + A DKL K Y D + E+ +G Y +F+ Y K+WI
Sbjct: 105 NRDQKSVAFFEDKL--------KVKAHPYIDYNLHGATEVKKDSGAGYKVFTPYFKRWIR 156
Query: 135 KVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGA 194
+ K PV ++ + S++L N ++ F S + G+ A
Sbjct: 157 QEKP-------APVSYVIDKRIKSARLLFPENEQLLET----FIDDRFSFIKKDLGSETA 205
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
K +LN FI + + Y+ R++P+ + TS+LS +LR G ISIR + + I + D
Sbjct: 206 KKVLNRFINESLDQYDEERDFPANDSTSHLSRYLRTGEISIRTVWRAIDQ------SPDS 259
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
G T++ +L WRDFY MI YPN +S K++ ++ W ++ ++ F W G TG+
Sbjct: 260 DGKSTFMKELCWRDFYNMIYVMYPNQNVESINKDFRHVDWINN---EQQFEAWRTGQTGF 316
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
P++D+A+ QLN++G+MHNRLRM+ ASFL K++ I+W+WGE YF NKL D+D ASN G WQ
Sbjct: 317 PIVDAAMRQLNATGWMHNRLRMIVASFLTKDLLIDWRWGEAYFHNKLLDYDAASNIGGWQ 376
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEK 433
W+AS+G S P+FRIFNP +QSKKFD G+FI+KY+P+L + NK IH P K S + +
Sbjct: 377 WAASTGTDSVPYFRIFNPTLQSKKFDSNGLFIKKYVPELKNVDNKMIHEPGKLSESEQTR 436
Query: 434 AGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ +G+NYP PI++HS ++K + Y K++
Sbjct: 437 FNVRIGQNYPFPIVDHSYARKRAISIYESSKDV 469
>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
Length = 466
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 240/461 (52%), Gaps = 33/461 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFI D +L S +R +F+F + +L +L+ S LIIR E+ +
Sbjct: 29 VIPVFILDDRLLQKEAS------KRKQFLFSGLRQLDEDLRKRGSQLIIRRGEPLAELTR 82
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + + ++ DY P A RD I +EL + + + ++ + +L G PY
Sbjct: 83 LIQETGAEEIVALEDYSPYARRRDSHIARELPL-----HLFAGETVYPPSLVLKPDGSPY 137
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ + + W ++ P S ++V + + + ++SL +
Sbjct: 138 TVFTPFSRAW-----------KALPFAS--PSVVSLPERFPAVPDKLVSLP----IPEAI 180
Query: 183 SSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
G A L NF+ + Y RN GTS+LS + RFG +S R V +
Sbjct: 181 FLQDFPPGELEALRRLENFLSGPAREYADGRNRLDQPGTSFLSPYFRFGMLSPRWAVFQV 240
Query: 242 FKFIKKHYKTDC-IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
K I+ D GY WL++LIWR+FY ILY YP+V+ +F I W A
Sbjct: 241 RKMIQITSSPDEKRGYEAWLNELIWREFYISILYHYPHVLAMAFNPALRAIEWRD---AP 297
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
W +G TGYP++D+A+ QL ++G+MHNR RM+ ASFL K++ INW+ GE +F L
Sbjct: 298 SELQAWKEGKTGYPVVDAAMRQLKATGWMHNRARMIVASFLTKDLLINWQEGEQWFMQNL 357
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D D A+NNG WQW+A G + P+FRIFNP++QS KFD QG +I+ ++P+L+ + ++I
Sbjct: 358 VDGDPAANNGGWQWTAGVGTDAAPYFRIFNPVLQSAKFDPQGRYIKTWVPELTSVPTEFI 417
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
H+PW G+ +G++YP P+++H + +L+ Y
Sbjct: 418 HAPWTMPLSLQISLGVRIGRDYPTPMVDHQEVRGRVLEAYR 458
>gi|387891969|ref|YP_006322266.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens A506]
gi|387162374|gb|AFJ57573.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens A506]
Length = 480
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 252/449 (56%), Gaps = 33/449 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ LS L N + L+IR+A A + +L +L++++V +N +Y
Sbjct: 47 KVDFWLRNLQHLSQALDNLNIPLLIRHAATWDQAPTVLSQLCRELSVESVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L+ G F SY DQ+ F+ +L KTG + +FS ++K CY
Sbjct: 107 SRRDSAVAQALEADGVTFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLN 199
+ + S L V + K + ++ + GF + + + G A+ L+
Sbjct: 158 SR---LHSALPRRVPTPKAQAEPGVKSDPVPTAVEGFPTPSETLRALWPAGEDEARRRLD 214
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F ++I Y R++P+ GTS LS +L G +S R+ + + + +++ IG T
Sbjct: 215 AFADQQISYYKDERDFPAKPGTSQLSAYLAAGVVSPRQCLHAALQTNQGEFESGDIGAIT 274
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++L+WR+FY+ IL YP V +++F+ E + + W A ++ W + TG P+ID
Sbjct: 275 WINELLWREFYKHILVGYPRVSRHRAFRPETEALAWRK---APEDLAAWQQARTGLPIID 331
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S
Sbjct: 332 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS 391
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIF+P+ QS+KFD G+FI+++LP+L+ L+ K +H+P E AG +
Sbjct: 392 TGTDSAPYFRIFSPLSQSEKFDGDGVFIKRWLPELAALNKKQVHNP--------EAAGGL 443
Query: 438 LG-KNYPKPILEHSLSKKNILKRYNFIKN 465
G +YP+ I++ S++ L + + +
Sbjct: 444 FGVADYPRAIVDLKQSRERALAAFRRLPS 472
>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 482
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 143/439 (32%), Positives = 243/439 (55%), Gaps = 16/439 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ KS+ L+ +L + L++R + E+ +++ + AV YEP A+ ++ +
Sbjct: 55 WLDKSLAALAGDLASRGGPLVLRRGDSETELLRMIEETGAAAVYFTRSYEPWAVALEQRL 114
Query: 90 KKELKV--IGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYP 147
K +L + C+ F +++ E ++ G Y +++ + + ++ + K
Sbjct: 115 KTKLDDANVACRRFG--GRLLREPEDMRTSNGGFYKVYTPFSRAIMKDLVPAKSVRAPER 172
Query: 148 VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIK 206
+ + L S +L + GF + + G +GA+ L++F++ +K
Sbjct: 173 IAT-LEKQPKSERLRDWALHPQKPDWSKGFAAA------WQPGEAGARKRLSDFVRTALK 225
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWR 266
+Y +RN P+ GTS LS HL FG IS K +D T+L +L+WR
Sbjct: 226 SYARDRNCPATPGTSRLSPHLAFGEISPAACWHAAAHAGGKTNGSDNAAE-TFLKELLWR 284
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
+F +L+ +P + + F+ E+ W + K+ W G TGYP++D+ + +L ++
Sbjct: 285 EFSAGLLFHFPELPEEPFRPEFSAFPWHGN---AKHLKAWQTGQTGYPIVDAGMRELWAT 341
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
GYMHNR+RM+TASFLIK++ I W+ GE +F + L D DLA+N+ NWQW A SG + P+F
Sbjct: 342 GYMHNRVRMITASFLIKHLLIPWQTGEAWFWDTLVDADLANNSANWQWVAGSGADAAPYF 401
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
RIFNP++Q +KFD G ++R+++P+L+KL + IH+PWKA S L +AG+ LGK+YP PI
Sbjct: 402 RIFNPVLQGEKFDPDGDYVRRWVPELAKLPRQIIHAPWKADSGTLMEAGVKLGKSYPNPI 461
Query: 447 LEHSLSKKNILKRYNFIKN 465
+EH ++ L Y IKN
Sbjct: 462 VEHGEARARALAGYEHIKN 480
>gi|424910085|ref|ZP_18333462.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846116|gb|EJA98638.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 479
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 144/436 (33%), Positives = 240/436 (55%), Gaps = 14/436 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L L+ S L++ A + +++L+ + D V N Y+P+ I DK +
Sbjct: 54 WLHHSLTALHAALKKTGSRLVLASGDAEEVLRRLIAETGADTVFWNRRYDPEGISTDKTL 113
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K+ L+ G S+ ++ E +++ K+G PY +++ + + +E + +
Sbjct: 114 KRALRDKGLTVRSFSGHLLHEPSKLQTKSGGPYRVYTPFWRA-LEGGEEPHAPADAPDRL 172
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNY 208
+ N S L + + D S++ + G GA+ L++FI +K Y
Sbjct: 173 NAPRNWPRSETLDEW--QLLPKRPDWAREFSDIWT----PGEDGAREKLSDFIDGALKGY 226
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDF 268
R+ P+ + TS LS HL G IS V K + +H ++ I F +++WR+F
Sbjct: 227 EEGRDLPAKDATSRLSPHLALGEISP-ATVWHATKGLSRHIASNDISRFR--KEIVWREF 283
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGY 328
+L+ +P + K++ +D W D+ K+F W +G TGYP++D+ + QL G
Sbjct: 284 CYHLLFHFPELDEKNWNDSFDAFNWRDDD---KSFTAWTRGMTGYPIVDAGMRQLWRHGT 340
Query: 329 MHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRI 388
MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D ASN NWQW A SG + PFFRI
Sbjct: 341 MHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRI 400
Query: 389 FNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
FNPI+Q++KFD G ++R+++P+L++L KYIH P++A L KAGI LG+ YP PI++
Sbjct: 401 FNPILQNEKFDGDGDYVRRFVPELARLERKYIHKPFEAPKEVLTKAGITLGETYPNPIVD 460
Query: 449 HSLSKKNILKRYNFIK 464
H +++ L Y +K
Sbjct: 461 HGRARERALAAYARVK 476
>gi|71733434|ref|YP_273281.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71553987|gb|AAZ33198.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 482
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 150/448 (33%), Positives = 247/448 (55%), Gaps = 31/448 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L +L I+ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K L+ G + SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL--GFCKSNLSSLGI-KTGASGAKIL 197
CY + + + V + K + ++ S+ D GF + + + G + A+
Sbjct: 156 CYNRMH---QAMPQPVRTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLWPAGEAEARRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F +I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 MATFADAQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W GE +F L D DLASNNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWHEGERFFMRHLIDGDLASNNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP-------ASIGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|406596893|ref|YP_006748023.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
gi|406374214|gb|AFS37469.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
Length = 474
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 157/412 (38%), Positives = 234/412 (56%), Gaps = 24/412 (5%)
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
I KL+ N + N YEP I RDK IKK L + S +++E ++L K G
Sbjct: 81 IPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHEYEAHSCNGSLLWEPMKVLKKDG 140
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVK-SYLNNLVHSSKLHKIINNNIISLNDLGFC 178
PY +F+ Y KK +V+ + Y ++ P + +Y + ++N+ L L
Sbjct: 141 TPYRVFTPYYKKGCLQVEEPR-YPKAPPARITYAD-----------VDNDSDGLTSLDLL 188
Query: 179 KSNLSSLGIK----TGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTIS 233
S I+ G GA L +FI+ + Y R+ PS NGTS LS HL FG +S
Sbjct: 189 PSINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSRLSPHLHFGEVS 248
Query: 234 IRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
++ + K ++ T+LS+L WR+F +L+ +P + NK+F +++D W
Sbjct: 249 PNQV---WYAIKDKFGNSEDKSIETYLSELGWREFSYYLLFHFPTLPNKNFNEKFDKFPW 305
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
+D A K W KG TG P++D+ + +L +GYMHNR+RM+ SFL+KN+ ++W GE
Sbjct: 306 RTDAKALKA---WQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNLLLSWHEGE 362
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
+F + L D DLASN+ +WQW A SG + P+FRIFNPI+Q +KFD +G ++RKY P+L
Sbjct: 363 RWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGNYVRKYCPELK 422
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
KLS+KYIH PW+A S L+ AGI LGK YPKPI++ S++ L + +K
Sbjct: 423 KLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAFQTLKE 474
>gi|407804385|ref|ZP_11151209.1| DNA photolyase [Alcanivorax sp. W11-5]
gi|407021678|gb|EKE33442.1| DNA photolyase [Alcanivorax sp. W11-5]
Length = 488
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 246/472 (52%), Gaps = 45/472 (9%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
C ++ + + PLR ++ R + +++ L I L D +A + +
Sbjct: 36 CPGQWEAHQVAPLRRWYVLSSLRE--LGQALAALGIVLDVIDCG---DFAGVPQALADYC 90
Query: 65 IKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSI 124
+ + + +Y + RD+ + L +G + D V+ + G PY++
Sbjct: 91 RRHQVSQLFCTREYPLNELRRDRAVADVLGGLGIALQGFDDSVLVPPRALKTGQGTPYTV 150
Query: 125 FSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSS 184
F+ Y+++W + YL+ + + ++ D + L++
Sbjct: 151 FTPYRRRW----------------QHYLDEHPPAPPA-RPRKREAVAFRDDNSLRKALAA 193
Query: 185 LGI--------KTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
L + + G + A+ L F+++ + Y R++P+ GTS LS+ L GT+S++
Sbjct: 194 LDVPASLQAHWQPGEAAARRRLQGFVREGLAGYKAQRDFPAQAGTSLLSVALSAGTLSVQ 253
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWE 294
+ + + + + T+ G W+ +L WRDFY+ I+ +P++ F++E + W+
Sbjct: 254 RCYLMAREAMAREADTE-EGALVWIGELAWRDFYRQIMANFPHLAWGAPFREETKWLQWQ 312
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
D ++ F WC+G TGYPL+D+A+ QLN +G+MHNRLRMVTA FL K++ I+W+WGE
Sbjct: 313 RD---EQCFQAWCEGRTGYPLVDAAMRQLNQTGWMHNRLRMVTAMFLTKHLFIDWRWGEA 369
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF +L D D A+NNG WQWSAS+G + P+FR+F+PI QS++FD G+FI++Y+P+L
Sbjct: 370 YFMRQLLDGDFAANNGGWQWSASTGTDAAPYFRVFSPIRQSERFDPDGVFIKQYVPELHG 429
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
L+ K +H PW A +L +YP PI++H ++ + + ++I
Sbjct: 430 LTGKALHQPWLAP---------MLAPDYPSPIVQHEGVRERVTAAFQQARDI 472
>gi|262274043|ref|ZP_06051855.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886]
gi|262221853|gb|EEY73166.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886]
Length = 483
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 236/447 (52%), Gaps = 28/447 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
+ + I + ++ L L+ + L+ R K+I + + +L I + DYE
Sbjct: 48 QADLIQRRLVTLRQELETLNIPLLFRSVDRYKDINQSLAQLCQQYQIADIFCTRDYETDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RD I L + G + + IF + N G Y +F+ ++K WI ++ +
Sbjct: 108 VDRDNAIAGMLSLTGTTLHRFDYKCIFAPGMVTNGAGNTYRVFTPFKKAWI--TQATQLD 165
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L S + +S L + + F S+G S L +F
Sbjct: 166 LSPIGAPSPVKTDALTSALLR-------QPCQIAFRYPQCDSVGWPIDDSAIIQRLRDFC 218
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ ++ +Y R++P+I GTS LS +L G IS R+ + + + + D G WLS
Sbjct: 219 RYRVDHYQATRDFPAIPGTSQLSPYLAIGAISPRQCLARLLAEVPNCMEKDAGGAHVWLS 278
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+LIWR+FYQ I Y +V K+F+ DNI W D F W +G TG+P++D+A+
Sbjct: 279 ELIWREFYQHIAAAYIDVSKGKAFQDWTDNIEWNRDEL---QFQRWKQGKTGFPIVDAAM 335
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QLN +G+MHNRLRM+ ASFL+K++ I+W+WGE YF +KL D D A+NNG WQWSAS+G
Sbjct: 336 RQLNDTGWMHNRLRMIVASFLVKDLHIDWRWGERYFMSKLIDGDFAANNGGWQWSASTGT 395
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP--WKASSYKLEKAGIIL 438
+QP+FR+FNP QSKKFD FIR++L +L + + +H+P W EK GI L
Sbjct: 396 DAQPYFRVFNPASQSKKFDPNVRFIRRWLKELESVPDSALHTPHIWA------EKKGIEL 449
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKN 465
+YP PI++H ++ + ++ + KN
Sbjct: 450 --SYPAPIVDHKTARISAIEMFEMAKN 474
>gi|407683884|ref|YP_006799058.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'English Channel 673']
gi|407245495|gb|AFT74681.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'English Channel 673']
Length = 474
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 156/412 (37%), Positives = 234/412 (56%), Gaps = 24/412 (5%)
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
+ KL+ N + N YEP I RDK IKK L + S +++E ++L K G
Sbjct: 81 VPKLMKAFNAKGIFWNRCYEPWQINRDKTIKKTLIEHDYEAHSCNGSLLWEPMKVLKKDG 140
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVK-SYLNNLVHSSKLHKIINNNIISLNDLGFC 178
PY +F+ Y KK +V+ + Y ++ P + +Y + ++N+ L L
Sbjct: 141 TPYRVFTPYYKKGCLQVEEPR-YPKAPPARITYAD-----------VDNDSDGLTSLDLL 188
Query: 179 KSNLSSLGIK----TGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTIS 233
S I+ G GA L +FI+ + Y R+ PS NGTS LS HL FG +S
Sbjct: 189 PSINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSRLSPHLHFGEVS 248
Query: 234 IRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
++ + K ++ T+LS+L WR+F +L+ +P + NK+F +++D W
Sbjct: 249 PNQV---WYAIKDKFGNSEDKSIETYLSELGWREFSYYLLFHFPTLPNKNFNEKFDKFPW 305
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
+D A K W KG TG P++D+ + +L +GYMHNR+RM+ SFL+KN+ ++W GE
Sbjct: 306 RTDAKALKA---WQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNLLLSWHEGE 362
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
+F + L D DLASN+ +WQW A SG + P+FRIFNPI+Q +KFD +G ++RKY P+L
Sbjct: 363 RWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGNYVRKYCPELK 422
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
KLS+KYIH PW+A S L+ AGI LGK YPKPI++ S++ L + +K
Sbjct: 423 KLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAFQTLKE 474
>gi|443645382|ref|ZP_21129232.1| Deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
B64]
gi|443285399|gb|ELS44404.1| Deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
B64]
Length = 482
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 248/452 (54%), Gaps = 39/452 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + KL + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K ++ G F SY DQ++F IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKAMEKAGVHFNSYLDQLLFRPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQ-----SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGA 194
CY + +PV++ S I ++ + GF + + + G + A
Sbjct: 156 CYTRLHEAMPHPVRTPQAQPAQS------IKSDAVPDQVKGFATPSKTLRDLWPAGEAEA 209
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
+ ++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T
Sbjct: 210 RRRMDAFADEQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGD 269
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+G TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG
Sbjct: 270 VGTVTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELRAWQEARTG 326
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
P+ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG W
Sbjct: 327 LPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGW 386
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QWS+S+G S PFFRIFNP+ QS++FD +G+FI+++LP+L+ ++ K IH P
Sbjct: 387 QWSSSTGTDSAPFFRIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP--------S 438
Query: 433 KAGIILG-KNYPKPILEHSLSKKNILKRYNFI 463
G + G +YPKPI++ S S+ L + +
Sbjct: 439 LIGDLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|442610110|ref|ZP_21024835.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441748329|emb|CCQ10897.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 462
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 141/437 (32%), Positives = 248/437 (56%), Gaps = 33/437 (7%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR+ F+ K++ + L ++ + + + + + ++ V N +YE R
Sbjct: 54 RRVAFLGKALARYGVTLHIIEAP---DFNLQQEALISFCEEHDVSEVYANAEYEINERER 110
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
D I L + F+ Y VI + + +G+ + +F+ ++K W+++ + ++
Sbjct: 111 DVNIANSLSALNMAFYLYDGDVIAKPGTVTTNSGEMFKVFTPFKKAWLKQREHYFPSIEP 170
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KK 204
+P+ ++ + N + S + + +L L++ FI +K
Sbjct: 171 WPLAE--------QQIDWAVPNCLASSGESSKWPVDDETL---------YELVDRFITEK 213
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ +Y+ R++PSI GTS LS + G +S+++++ I + F+W+++LI
Sbjct: 214 LMDYSAKRDFPSIKGTSGLSPYFALGIVSVKQVLAAILQAYPDLLNQPSRPEFSWINELI 273
Query: 265 WRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+FY+ +++ +P++ ++F +YD ++W S+ + F WC+G TGYPL+D+A+ QL
Sbjct: 274 WREFYRHLIFTWPHLCKRRNFNNKYDFVVWRSNQH---EFTAWCEGKTGYPLVDAAMRQL 330
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
N +G+MHNRLRMV ASFL K++ I+W+ GE YF +KL D DLASNNG WQW+AS+GC +Q
Sbjct: 331 NQTGWMHNRLRMVVASFLTKHLLIDWRLGEKYFMSKLIDGDLASNNGGWQWAASTGCDAQ 390
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYP 443
P+FRIFNPI QS+KFD +G FIRKY+ +L ++ +KYIH P ++ +YP
Sbjct: 391 PYFRIFNPITQSEKFDPKGTFIRKYVTELKEVPDKYIHFP--------HDYLVLKPSDYP 442
Query: 444 KPILEHSLSKKNILKRY 460
KPI++H L+++ L +
Sbjct: 443 KPIVDHKLARERALAAF 459
>gi|315301776|ref|ZP_07872823.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596]
gi|313629850|gb|EFR97936.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596]
Length = 471
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/406 (37%), Positives = 232/406 (57%), Gaps = 29/406 (7%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + G F++ D + + + T + Y IF+ Y
Sbjct: 89 DKVYFNRDETGYGAKRDETALRFFAQAGMTVFAFDDAYLHHADAVKKSTSEFYKIFTPYY 148
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGI 187
KKW E++K +P++ +N +K+ K I + ++ F + L L
Sbjct: 149 KKWREEIKE-------FPIQVTVN----PAKIQKAI---LFPEDEEQFVQMAQALPMLAE 194
Query: 188 KT-GASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
G + A LN+F+K+ + Y R++P ++ TS+LS LR G +SIR +++ +
Sbjct: 195 NMLGETVANNQLNHFVKENLAQYKEVRDFPDLDKTSHLSRFLRTGELSIR----TVWQAV 250
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD-NYAKKNFL 304
+K TD G T+ +L WRDFY MI +PN N++ + Y I WE++ NY F
Sbjct: 251 QKAEPTD--GRTTFEKELCWRDFYNMIYVSFPNQKNEAIQTNYRFIEWENNRNY----FQ 304
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W +G TGYPL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W+WGE YF L D+D
Sbjct: 305 KWQQGATGYPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRWGEKYFQQMLVDYD 364
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
ASN G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +K+IH P
Sbjct: 365 PASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDSLGNFIRKYVQELANLPDKFIHQPE 424
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
K ++ + + +ILG++YP PI+ H +K + RY F K ++N
Sbjct: 425 KMTAKEQTEFKVILGEDYPFPIINHQERRKEAIARYEFSKAYASQN 470
>gi|186682403|ref|YP_001865599.1| DNA photolyase [Nostoc punctiforme PCC 73102]
gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
Length = 481
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 159/472 (33%), Positives = 252/472 (53%), Gaps = 33/472 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D +IL+ + + R+ ++ + +L S L+I +A + I
Sbjct: 31 VVGVFCLDPHILE----RDDVAPVRVTYMIGCLQKLQERYAQVGSQLLILHADPVQAIPA 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L +N AV N D EP + RD+ I LK G +F + DQ++ +EI P
Sbjct: 87 LAEAINAKAVFWNWDVEPYSQERDRTIINALKEKGIEFLNQNWDQILNSPDEIRTGGNSP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN-----NIISLNDLG 176
Y++++ + K WI K K+N PV++ L N+ ++ + I + S DLG
Sbjct: 147 YTVYTPFWKNWITKPKAN-------PVET-LQNVEGLTEAEQEIAKLSGSLTLPSAKDLG 198
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
F L I G + A+ L F K I Y RN+P+++GTS LS L+FG I IR
Sbjct: 199 FIWD--EQLIISPGEAAAQERLEEFTNKAITEYQEQRNFPAVDGTSQLSAALKFGVIGIR 256
Query: 236 KLVKLIFKFIK-KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
+ + + ++ + + TW +L WR+FYQ +Y +P + + +F+ + N WE
Sbjct: 257 TVWQATIEALENSRSEETAVNIRTWQQELAWREFYQHAMYNFPELADGAFRDTFKNFPWE 316
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
++ +++F WC+G TGYP++D+A+ Q+N SG+MHNR RM+ ASFL K++ IN + GE
Sbjct: 317 TN---EEHFQAWCEGRTGYPIVDAAMRQMNESGWMHNRCRMIVASFLTKDLLINPQLGEK 373
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF L D DL++NNG WQWSASSG +P RIFNP Q++KFD +G +IR+++ +L
Sbjct: 374 YFMKHLIDGDLSANNGGWQWSASSGMDPKP-VRIFNPASQTQKFDPEGEYIRQWVSELRS 432
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ +Y+ + LE+ + YP PI++H + + RY KN
Sbjct: 433 VDTEYLVT---GKIPPLERHAV----GYPDPIVDHKIQQNQFKLRYQQQKNT 477
>gi|409728146|ref|ZP_11271017.1| deoxyribodipyrimidine photolyase [Halococcus hamelinensis 100A6]
gi|448723116|ref|ZP_21705641.1| deoxyribodipyrimidine photolyase [Halococcus hamelinensis 100A6]
gi|445788071|gb|EMA38793.1| deoxyribodipyrimidine photolyase [Halococcus hamelinensis 100A6]
Length = 466
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/467 (30%), Positives = 248/467 (53%), Gaps = 32/467 (6%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV VF+FD +LD G R+ F+ S+ L + ++ L++ + ++E+
Sbjct: 25 EVLPVFVFDPTVLD---HAGPA---RVAFLLDSLDALREDYRDRGGGLVVAHGDPAEELP 78
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L + +AV NHDY A RD+ ++ L ++ D V E I G P
Sbjct: 79 RLADEHGAEAVFWNHDYTGLARERDRRVESALDDADIDHETFHDAVHHEPGAITTNDGDP 138
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y++FS++ KKW+++ K + SYP + + ++++ + +DLGF + +
Sbjct: 139 YAVFSYFGKKWLDREKES-----SYPPPN--------GDALRAGDDDLPTSDDLGFDEPD 185
Query: 182 LSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ + G A+ L++F + I Y R YP+ GTS LS L++GTI IR++ +
Sbjct: 186 ATL--PEAGTEAARDRLDSFCEAAIGEYETEREYPARAGTSRLSQDLKYGTIGIREVSER 243
Query: 241 IFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW-ESDNY 298
+ + + D T+ +L WR+FY +L P VV +++ + I W ESD+
Sbjct: 244 VAEAADRADGDDVRESIETYREELAWREFYTQVLRYNPEVVTENYSSYENPIEWRESDD- 302
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ W G TGYP++D+ + QL+ Y+HNR+RM+ A+FL K++ ++W+ G ++F
Sbjct: 303 ---DLDAWKDGETGYPIVDAGMRQLHEEAYIHNRVRMIVAAFLTKDLLLDWRAGYDHFRE 359
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D D A++NG WQW+AS+G +QP+FR+FNP+ Q +++D +I+ Y+P+L +
Sbjct: 360 LLVDHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGERYDPDAEYIKTYVPELDDVDPD 419
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IHS W S + E+A + +YP PI +H ++ + + +
Sbjct: 420 DIHS-WHELS-EDERADV--APDYPDPICDHGERREEAIAMFERARG 462
>gi|21910695|ref|NP_664963.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315]
gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1]
gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS315]
gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
SSI-1]
Length = 469
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 243/463 (52%), Gaps = 31/463 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CVF F+ L+ L S R S++ L+ DL + Y ++L+
Sbjct: 31 CVFQFNNEQLNLLHS------RNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCFEQLL 84
Query: 65 IKL-NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYS 123
+L + V N+D +RD+ + K G +Y+D + EI+N++G+PY
Sbjct: 85 TQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYK 144
Query: 124 IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS 183
+F+ Y + W Q+YP ++ + + + + + + F
Sbjct: 145 VFTPYYRIW-----------QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQ 193
Query: 184 SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ AS LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR + +
Sbjct: 194 DVATFDEASKQ---LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 250
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + +G T+L +L WRDFY M+ YP+ + +K + I W ++
Sbjct: 251 Q------APNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---PDW 301
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE YF +L D
Sbjct: 302 FQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLID 361
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D ASN G WQW+AS+G + P+FRIFNP+ Q K+FD +G FI+ YLPQL + KY+H
Sbjct: 362 YDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHE 421
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PWK Y E I+G +YP+PI++H+ ++ + +Y + K
Sbjct: 422 PWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKE 464
>gi|374261679|ref|ZP_09620257.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
gi|363537773|gb|EHL31189.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
Length = 477
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/442 (34%), Positives = 250/442 (56%), Gaps = 21/442 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S++ L L+ DL ++ A I +L+ I+AV N YEP++I RDK I
Sbjct: 48 WLHHSLLALQKELKKQGLDLCLKQGQALSIIHELIKNHKIEAVYWNRCYEPKSIQRDKQI 107
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYL--QSYP 147
K EL++ G + +S+ ++ E + NK G + +F+ Y K+ I + ++ Q P
Sbjct: 108 KDELRLKGLQVYSFNGSLLNEPWTVKNKNGDYFKVFTPYWKQCIRQTTQSRVSSINQRPP 167
Query: 148 VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IK 206
+ + + +L N I + + G GA LN FI+ ++
Sbjct: 168 PLTSTSEQLSDWRLLPQKPNWAIEFPNYW-----------EPGEHGAMNKLNFFIEHHLQ 216
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWR 266
+Y RN+PS TS L+ HL FG IS ++ I + K K D +L++L WR
Sbjct: 217 DYQEARNHPSKTATSRLAPHLHFGEISPWQVWNAIEE-AKLQPKCDLRSADHFLAELGWR 275
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
+F +LY +P + NK+F++E+D W+ D + + W G TG+P++D+ + +L +
Sbjct: 276 EFSYYLLYHFPELPNKNFRQEFDAFPWQQD---ETHLKCWQTGMTGFPIVDAGMRELWHT 332
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
GYMHNR+RM+ ASFLIK++ I+W+ G +F N L D DLA+N+ +WQW A +G S P+F
Sbjct: 333 GYMHNRVRMIVASFLIKDLMIDWRAGAAWFYNTLLDADLANNSASWQWVAGTGADSAPYF 392
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
RIFNP +QS+KFD QG +I+ ++P+LS++ ++IH PW+A L I LGK+YP P+
Sbjct: 393 RIFNPTLQSEKFDPQGEYIKMWIPELSQVPRQWIHKPWEAPPQTL---AITLGKDYPYPL 449
Query: 447 LEHSLSKKNILKRYNFIKNILN 468
++H+L +K L+ Y ++ + N
Sbjct: 450 VDHALVRKIALQHYQSLRKVAN 471
>gi|440720032|ref|ZP_20900453.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP34876]
gi|440726158|ref|ZP_20906414.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP34881]
gi|440366754|gb|ELQ03831.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP34876]
gi|440366891|gb|ELQ03961.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP34881]
Length = 482
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 249/449 (55%), Gaps = 33/449 (7%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + KL + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ + K ++ G F SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVHKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSNLSSLGI-KTGASGAKIL 197
CY + + + + V + K I ++ I GF +++ + G + A+
Sbjct: 156 CYTR---LHEAMPHTVRTPKAQPAQSIKSDAIPDQANGFATPSIALRDLWPAGEAEARRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 MDAFADEQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELRAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ ++ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP--------SLIG 441
Query: 436 IILG-KNYPKPILEHSLSKKNILKRYNFI 463
+ G +YPKPI++ S S+ L + +
Sbjct: 442 DLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|422620510|ref|ZP_16689188.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. japonica
str. M301072]
gi|330900868|gb|EGH32287.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. japonica
str. M301072]
Length = 482
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 249/449 (55%), Gaps = 33/449 (7%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + KL + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ + K ++ G F SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVHKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSNLSSLGI-KTGASGAKIL 197
CY + + + + V + K I ++ I GF +++ + G + A+
Sbjct: 156 CYTR---LHEAMPHTVRTPKAQPAQSIKSDAIPDQAKGFATPSIALRDLWPAGEAEARRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 MDAFADEQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALNWRD---APEELRAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ ++ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP--------SLIG 441
Query: 436 IILG-KNYPKPILEHSLSKKNILKRYNFI 463
+ G +YPKPI++ S S+ L + +
Sbjct: 442 DLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|257482020|ref|ZP_05636061.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|422598313|ref|ZP_16672576.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330988593|gb|EGH86696.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 482
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/448 (33%), Positives = 247/448 (55%), Gaps = 31/448 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K L+ G + SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL--GFCKSNLSSLGI-KTGASGAKIL 197
CY + + + V + K + ++ S+ D GF + + + G + A+
Sbjct: 156 CYNRMH---QAMPQPVRTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLWPAGEAEARRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F +I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 MATFADAQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP-------ASIGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGAADYPKPIVDLSKSRARALTAFKAL 470
>gi|423689838|ref|ZP_17664358.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens SS101]
gi|388001680|gb|EIK63009.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens SS101]
Length = 480
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 252/449 (56%), Gaps = 33/449 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ LS L N + L+IR+A A + +L +L++++V +N +Y
Sbjct: 47 KVDFWLRNLQHLSQALGNLNIPLLIRHAATWDQAPTVLSQLCRELSVESVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L+ G F SY DQ+ F+ +L KTG + +FS ++K CY
Sbjct: 107 SRRDSAVAQALEADGVTFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLN 199
+ + S L V + K + ++ + GF + + + G A+ L+
Sbjct: 158 SR---LHSALPRRVPTPKAQAEPGVKSDPVPTAVEGFPTPSETLRALWPAGEDEARRRLD 214
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F ++I Y R++P+ GTS LS +L G +S R+ + + + +++ IG T
Sbjct: 215 AFADQQISYYKDERDFPAKPGTSQLSAYLAAGVVSPRQCLHAALQTNQGEFESGDIGAIT 274
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++L+WR+FY+ IL YP V +++F+ E + + W A ++ W + TG P+ID
Sbjct: 275 WINELLWREFYKHILVGYPRVSRHRAFRPETEALAWRK---APEDLAAWQQARTGLPIID 331
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S
Sbjct: 332 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS 391
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIF+P+ QS+KFD G+FI+++LP+L+ L+ K +H+P E AG +
Sbjct: 392 TGTDSAPYFRIFSPLSQSEKFDGDGVFIKRWLPELAALNKKQVHNP--------EAAGGL 443
Query: 438 LG-KNYPKPILEHSLSKKNILKRYNFIKN 465
G +YP+ I++ S++ L + + +
Sbjct: 444 FGVADYPRAIVDLKQSRERALAAFRRLPS 472
>gi|448666718|ref|ZP_21685363.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
gi|445771849|gb|EMA22905.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
Length = 465
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/466 (30%), Positives = 242/466 (51%), Gaps = 32/466 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD+ +LD R+ F+ ++ L ++ SDL++ + I
Sbjct: 27 VVPVFVFDRAVLDHAGPP------RVAFMLDALDSLREWYRDRGSDLVVARGDPTAVIPD 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L ++ +D V DY A RD ++++ L + ++ V+ E EI G PY
Sbjct: 81 LAVEYGVDTVTWGKDYSGLARERDAVVRQALDDADVAREAVQNAVLHEPGEITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+++ +KW ++ K+ S + +L + + + +L DLGF +
Sbjct: 141 SVFTYFGRKWHDREKTAPYEPPS------------ADELADVDGDALPTLADLGFDEPEA 188
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
G A+ LL++F+ + + Y R++P+ TS LS HL+FGTI IR++
Sbjct: 189 DVPA--AGTDEARALLDDFLDENVYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRT 246
Query: 242 --FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
K + + + F SQL WR+FY +L+ +P+VV+ ++K + I WE+D
Sbjct: 247 EDAKEGTGGDRRESVREFQ--SQLAWREFYTQVLFAHPHVVSSNYKSYENPIEWEND--- 301
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
++ W G TGYP++D+ + QL YMHNR+RM+ ASFL K++ ++W+ G +F K
Sbjct: 302 EELLQAWKDGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLVDWRHGYEWFREK 361
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D D A++NG WQW+AS+G +QP+FRIFNP+ Q + +D +I++Y+P+L + +
Sbjct: 362 LVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPDAEYIKEYVPELRDAAPEV 421
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH W S + YP P+++HS ++ L + +
Sbjct: 422 IHD-WNDCSLTQRRNA---APEYPDPVVDHSKRREQALSMFERARG 463
>gi|346325901|gb|EGX95497.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Cordyceps
militaris CM01]
Length = 772
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/452 (36%), Positives = 246/452 (54%), Gaps = 27/452 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINH-----DYEPQ 81
RI+FI +++ L +L D L + EI V++L +D+ NH +YE
Sbjct: 281 RIDFILRTLQVLRDDLAKLDIPLYVETVEERAEIPGRVLEL-LDSWGCNHLCANLEYEVD 339
Query: 82 AIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKC 141
+ R+ + + L G F + D + ++ + TG Y++++ + + W+ + SN
Sbjct: 340 ELRRETKLLRLLAEKGKSFEAVHDTCVVPPGQLRSGTGNQYAVYTPWYRTWMAHIHSNLD 399
Query: 142 YLQSY--PVKSYLNNLVHSSKLHKIINNNIISL---NDLGFCKSNLSSLGIKTGASGAKI 196
L+ + P K N K K+ N I + +L + G AK
Sbjct: 400 LLELHDSPPK---NPASARKKFQKLFNCEIPAAAKGKELSAEEKKRFHALWPCGEHEAKA 456
Query: 197 LLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK-KHYKTDCI 254
L+ F + +I Y+ RN PS NGTS LS+HL GTIS R V+ K K
Sbjct: 457 RLDKFCEERIGEYSEKRNVPSDNGTSSLSVHLASGTISARTCVRTARDRNKSKKLDGGLD 516
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
G W+S++ WRDFY+ +L +P+V +NK +K +Y +I W +Y ++F WC+G TG+
Sbjct: 517 GIKVWISEVAWRDFYRHVLVRWPHVCMNKPYKPDYADIEW---SYDTEHFKAWCEGKTGF 573
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
P++D+A+ QLN +GYMHNR RMV ASFL K++ I+W+ GE YF L D D ASNNG W
Sbjct: 574 PIVDAAMRQLNHTGYMHNRTRMVVASFLAKDLLIDWRMGEKYFMEHLVDGDFASNNGGWG 633
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW-KASSYKLE 432
+SAS G QP+FRIFNP+ QS++FD G +IR ++P+L L NK IH P+ + + K +
Sbjct: 634 FSASVGVDPQPYFRIFNPLRQSERFDADGEYIRHWVPELKDLDNKQIHDPYGRGAGDKAK 693
Query: 433 KAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
KAG YPKPI+EH + +K N ++
Sbjct: 694 KAG------YPKPIVEHISTATAFMKANNDLR 719
>gi|422679531|ref|ZP_16737804.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331008878|gb|EGH88934.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 482
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/448 (33%), Positives = 247/448 (55%), Gaps = 31/448 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K L+ G + SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL--GFCKSNLSSLGI-KTGASGAKIL 197
CY + + + V + K + ++ S+ D GF + + + G + A+
Sbjct: 156 CYNRMH---QAMPQPVRTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLWPAGEAEARRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F +I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 MATFADAQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P G
Sbjct: 390 SSTGTDSPPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP-------ASIGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGAADYPKPIVDLSKSRARALTAFKAL 470
>gi|289624749|ref|ZP_06457703.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289648378|ref|ZP_06479721.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422584088|ref|ZP_16659203.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330868910|gb|EGH03619.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 482
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/448 (33%), Positives = 247/448 (55%), Gaps = 31/448 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K L+ G + SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL--GFCKSNLSSLGI-KTGASGAKIL 197
CY + + + V + K + ++ S+ D GF + + + G + A+
Sbjct: 156 CYNRMH---QAMPQPVRTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLWPAGEAEARRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F +I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 MATFADAQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP-------ASIGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|354568677|ref|ZP_08987840.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
gi|353539931|gb|EHC09411.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
Length = 480
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 246/466 (52%), Gaps = 31/466 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D NIL+ + + R+ ++ + L S L+I +A ++ I
Sbjct: 31 VVGVFCLDPNILE----RDDVAPVRVTYMIGCLQALQKRYAQAGSQLLILHAHPTQAIPA 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L + L AV N D EP + RD+ I LK G +F DQV+ +I + +P
Sbjct: 87 LAVALGAKAVFWNWDVEPYSQERDRTIISALKEKGIEFLENNWDQVLHAPEDIRTGSNQP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN-NIISL---NDLGF 177
Y++++ + K WI K K+ PV + N + K +I + +I+L DLGF
Sbjct: 147 YTVYTPFWKNWISKPKAE-------PVATLENAEGLTEKEKEIAKSAGVIALPSAKDLGF 199
Query: 178 CKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
L I G A+ L F + I Y RN+P+++GTS LS L+FG I IR+
Sbjct: 200 VWDG--ELIIAPGEQAAQERLEEFCDRAINEYQEQRNFPAVDGTSRLSAALKFGAIGIRR 257
Query: 237 LVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + + + TW +L WR+FYQ +Y +P + +++ + N WE
Sbjct: 258 VWQATQQVWENSRSEETQSNIRTWQQELAWREFYQHAMYNFPELAAGAYRDAFKNFPWEI 317
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
++ ++F WC+G TGYP++D+A+ Q+N G+MHNR RM+ ASFL K++ IN + GE Y
Sbjct: 318 NH---EHFQAWCEGKTGYPIVDAAMRQMNEIGWMHNRCRMIVASFLTKDLLINPQMGERY 374
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F KL D DL++NNG WQWSASSG +P RIFNP Q++KFD + +IR+++P+L
Sbjct: 375 FMQKLIDGDLSANNGGWQWSASSGMDPKP-VRIFNPASQAQKFDPEAEYIRQWVPELRSF 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+Y+ + LE+ + YP PI++H L +K +RY
Sbjct: 434 DTEYLVT---GKITPLERQAV----GYPAPIVDHKLQQKMFKERYQ 472
>gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii
DSM 6242]
gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM
6242]
Length = 467
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 154/471 (32%), Positives = 253/471 (53%), Gaps = 43/471 (9%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V FI D + DP ++F+ +S+ +L L+ + L + + I +
Sbjct: 34 VIPCFILDPRLCDP--KGKAFNSNALQFLLESLYDLKGQLEKVNGRLYLFSGLPEGVIGQ 91
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ L IDAV +NHDY P +I RD I G + D ++ E I K G PY
Sbjct: 92 LLENLEIDAVFVNHDYTPFSIKRDMQIASICTDKGVDMLQFHDCLLHEPGSIRTKKGTPY 151
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + + E K + + S+ + + +++ F K +L
Sbjct: 152 KVFTQFFR---EASKRDVAVPSMFSGGSFFTG-----------DCGVDEVDEGSFLKRSL 197
Query: 183 ----SSLGIKTG-ASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ + G A+G +L + + + NY+ R+ PS+ GT+ LS H + GTISIR+
Sbjct: 198 PERNEQIFVHGGRANGLSVLQS--LSQFVNYDTERDLPSVKGTTGLSAHNKLGTISIREF 255
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + + + T +++L WRDF+ I + +P+V +FKK++D++ W++D
Sbjct: 256 YYSVIDELGRGH--------TLINELYWRDFFTQISFEFPDVFKHAFKKKFDHLSWDND- 306
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ F WC G TG+P++D+ + +LN++GYMHNR+RM+ ASFL+K++ I+WK GE YFA
Sbjct: 307 --RIFFDAWCLGKTGFPIVDAGMRELNTTGYMHNRVRMIVASFLVKDLHIDWKRGERYFA 364
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+KL D+D NNGNWQW+AS+G SQP+FRIFNP +Q KKFD +I+K++P+L +
Sbjct: 365 SKLVDYDPCVNNGNWQWAASTGADSQPYFRIFNPWLQQKKFDKDCKYIKKWIPELEDIEP 424
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILN 468
+ IH KLEK + + YP PI++HS ++ L + I++
Sbjct: 425 QRIH--------KLEKGDMDI-PGYPAPIVDHSKEREVALFMFKAASQIMD 466
>gi|422297090|ref|ZP_16384734.1| deoxyribodipyrimidine photolyase [Pseudomonas avellanae BPIC 631]
gi|407991591|gb|EKG33413.1| deoxyribodipyrimidine photolyase [Pseudomonas avellanae BPIC 631]
Length = 482
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/449 (33%), Positives = 249/449 (55%), Gaps = 33/449 (7%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L +LN++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGKLNVPLLIREADTWDQAPEVLSSLCKQLNVEGLHLNEEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ +++ ++ G F S+ DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQQAMQADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSNLSSLGI-KTGASGAKIL 197
CY + + + VH+ + + I ++ I GF + S + G A
Sbjct: 156 CYTR---LHEAMPRTVHTPEAQQPLSIKSDAIPDQVKGFTTPSKSLRDLWPAGEVEASRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 IEAFADEQISYYKDERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSEQFDPEGVFIKRWLPELADLNKKQIHDP--------ASVG 441
Query: 436 IILG-KNYPKPILEHSLSKKNILKRYNFI 463
+ G +YPKPI++ S S+ L + +
Sbjct: 442 DLFGIADYPKPIVDLSKSRARALAAFKAL 470
>gi|422604194|ref|ZP_16676211.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori
str. 301020]
gi|330887853|gb|EGH20514.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori
str. 301020]
Length = 482
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/448 (33%), Positives = 247/448 (55%), Gaps = 31/448 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L +L ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADTWDQAPEVLSTLCTQLKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K L+ G + SY DQ++F+ IL K G + +F+ ++K
Sbjct: 105 NETRRDQAVQKALEKAGVQVTSYLDQLLFKPGSILTKAGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL--GFCKSNLSSLGI-KTGASGAKIL 197
CY + + + V + K + ++ S+ D GF + + + G + A+
Sbjct: 156 CYNRMH---QAMPQPVRTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLWPAGEAEARRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F +I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 MATFADAQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGLFIKRWLPELADLNKKQIHDP-------ASIGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|389848325|ref|YP_006350564.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|448618531|ref|ZP_21666768.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|388245631|gb|AFK20577.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|445746902|gb|ELZ98360.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
Length = 482
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/475 (30%), Positives = 250/475 (52%), Gaps = 33/475 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ +F+FD+ +L+ S R+ ++ ++ EL + Q+ SDL++ + +
Sbjct: 27 IAPLFVFDQAVLEHAGSP------RVRYMLDALAELRASYQSLGSDLLVAHGDPKAVVPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L D V+ N DY A RD ++ L + S D + I G PY
Sbjct: 81 VAAALEADGVVWNTDYSGVARERDANVRSALDDASVSYESVHDAIFHPPGSITTNAGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLH-----------KIINNNIIS 171
S+++++ KKW ++ K + YP + ++LV ++ L + ++ +
Sbjct: 141 SVYTYFWKKWRDRDKPDP-----YP-EPDADSLVDAAVLEAASETLSDADFDVAVGDLPT 194
Query: 172 LNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFG 230
++DLGF + S+ + G A+ L +F + I Y +R+YP+ N TS LS L+FG
Sbjct: 195 ISDLGFDEP--SADIVSAGTDAARKRLADFCEDAIYRYADDRDYPARNATSRLSTDLKFG 252
Query: 231 TISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDN 290
TI IR++ + + T+ SQL WR+FY +L PNVV +++K+ +
Sbjct: 253 TIGIREVYAATAEAREGVGGEQDESVETFQSQLAWREFYAHVLRYNPNVVTENYKEYEHD 312
Query: 291 ILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWK 350
I W D+ W +G TGYP++D+ + QL YMHNR+RM+ ASFL K++ NW+
Sbjct: 313 IQWRDDS---DELAAWKEGRTGYPIVDAGMRQLKKEAYMHNRVRMIVASFLTKDLLCNWR 369
Query: 351 WGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLP 410
G ++F L+D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D G +I+KY+P
Sbjct: 370 HGYDHFREYLSDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKKYVP 429
Query: 411 QLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+L ++ IH + S + ++ + NYP PI++H+ ++ L + +
Sbjct: 430 ELEGVAASTIHEWHEISETERDR----VAPNYPAPIVDHAERREMALSMFETARG 480
>gi|448688386|ref|ZP_21694219.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
gi|445779447|gb|EMA30377.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
Length = 465
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/456 (31%), Positives = 237/456 (51%), Gaps = 28/456 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD+ +LD R+ F+ ++ L +N SDL+I + + +
Sbjct: 27 VVPVFIFDRAVLDHAGPP------RVAFMLDALDSLREWYRNRGSDLVIAEGDPTSVLPE 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + V DY A RD +++ L + ++ V+ E EI G PY
Sbjct: 81 LATEYGAEKVTWGKDYSGLARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+++ +KW ++ K S + +L ++ + + +L DLGF +
Sbjct: 141 SVFTYFGRKWHDREKEVPYDPPS------------TDELAEVDGDALPTLADLGFEEPEA 188
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
G A+ LLN+F+ + + Y R++P+ TS LS HL+FGTI IR++
Sbjct: 189 DV--PPAGTDEARALLNDFLDENVYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRT 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + SQL WR+FY +L+ +P+VV ++K ++I WE+D ++
Sbjct: 247 QDAKEGAGGNHHESVREFQSQLAWREFYTQVLFAHPHVVTSNYKSYENSIEWEND---EE 303
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
W G TGYP++D+ + QL + YMHNR+RM+ ASFL K++ I+W++G +F KL
Sbjct: 304 LLQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVASFLTKDLLIDWRYGYEWFREKLV 363
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D D A++NG WQW+AS+G +QP+FRIFNP+ Q + +D +I+KY+P+L +++ IH
Sbjct: 364 DHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPDAEYIKKYVPELRDAASEVIH 423
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
W S + YP P+++H ++ L
Sbjct: 424 D-WNECSLTQRRNA---APEYPDPVVDHGERREQAL 455
>gi|434387598|ref|YP_007098209.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
gi|428018588|gb|AFY94682.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
Length = 478
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/466 (32%), Positives = 245/466 (52%), Gaps = 22/466 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF FD+ IL + + R+ ++ + L+ + + S L+ +I
Sbjct: 31 VIGVFCFDRAIL----TNDSVAPARVTYLVGCLQSLAKDYRRAGSQLLFVEGNPVVKIPL 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L AV + D EP + RD+ I LK G + + DQ++ +EI+ +PY
Sbjct: 87 LATTLKAQAVYWHLDIEPYSQTRDESIATTLKSDGIEVHTNWDQLLHAPSEIITGNKQPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++++ + + W + K ++ P + L + L ++ ++ + DLGF N
Sbjct: 147 TVYTPFWRNWNSRSKPAPVEVKLPPCQLDATEL---TDLAQVPTIDLPTAKDLGFTWEN- 202
Query: 183 SSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L ++ G S A L F + I Y+ RNYP++ GTS LS L+FG I IR +
Sbjct: 203 -PLKLEPGTSAAARELAEFCDRSICEYDEQRNYPALTGTSGLSAALKFGVIGIRTVWAAT 261
Query: 242 FKFIKKHYKTDC-IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + + + G TW +L WR+FYQ +Y +P++ +++ + W+ D +
Sbjct: 262 IEAMAQTSSDEARAGITTWQQELAWREFYQQAMYHFPSLAQGAYRDPLKHFPWQDD---Q 318
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F WC+G TGYP++D+A+ QLN G+MHNR RM+ ASFL K++ INW+WGE YF +L
Sbjct: 319 NRFDAWCRGETGYPIVDAAMRQLNEIGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQRL 378
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D DL++NNG WQWSASSG +P RIFNP Q++KFD + +IR+++P+L + I
Sbjct: 379 IDGDLSANNGGWQWSASSGMDPKP-LRIFNPYTQAQKFDPEADYIRQWVPELKSVETNLI 437
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
S + L + I YP PI++HS+ ++ Y +K +
Sbjct: 438 LS---GNIPPLTRHQI----GYPLPIVDHSVQQRLFKDLYASVKGV 476
>gi|392307549|ref|ZP_10270083.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas citrea NCIMB
1889]
Length = 462
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/436 (34%), Positives = 240/436 (55%), Gaps = 31/436 (7%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RRI+++ + + ++ I L+ D+ YA ++ +D V N +YE + R
Sbjct: 55 RRIDYLGQKLAQVGIELRIISVDM---YADIPAKLDAFCKSYQVDYVYANTEYEINEVAR 111
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
D +G K + VI + +L K+ + + +F+ ++K W++ + + + S
Sbjct: 112 DTACMS----LGVKLRLFDGDVIAKPGSVLTKSQEMFKVFTPFKKAWLKLFEQTQFIVPS 167
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKI 205
+P L KL + + D CK + S A+I I+K
Sbjct: 168 WP-------LDQQGKLTTVWCKPDSLIGDDSSCKWPVDD------ESLARIASRFVIEKC 214
Query: 206 KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIW 265
Y+ R+ P I GTS LS +L G IS+++L+ + +T FTW+++LIW
Sbjct: 215 AKYHAERDIPGIKGTSGLSPYLAIGAISVKQLIAEVQCHFPDILQTPSKDEFTWINELIW 274
Query: 266 RDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
R+FY+ ++ YPN+ ++F +YD ++W +DN ++ F WC+G TGYP++D+A+ QLN
Sbjct: 275 REFYRHLIVAYPNLCKYRNFNSKYDTVVW-NDN--EELFSAWCRGDTGYPIVDAAMRQLN 331
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
+G+MHNRLRM+ ASFL K++ I+W+ GE YF KL D D ASN+G WQW+AS+GC +QP
Sbjct: 332 QTGWMHNRLRMIVASFLTKHLLIDWRKGERYFMEKLIDGDFASNSGGWQWAASTGCDAQP 391
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNP+ QSKKFD +G FIR Y+P+L+ + +KYIH P + NY
Sbjct: 392 YFRIFNPVTQSKKFDPEGNFIRTYVPELADIPSKYIHFP-------HDYIASFSSSNYSP 444
Query: 445 PILEHSLSKKNILKRY 460
I+EH +++ L +
Sbjct: 445 AIVEHKEARQRALDAF 460
>gi|444380063|ref|ZP_21179230.1| Deoxyribodipyrimidine photolyase [Enterovibrio sp. AK16]
gi|443675884|gb|ELT82598.1| Deoxyribodipyrimidine photolyase [Enterovibrio sp. AK16]
Length = 483
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/450 (33%), Positives = 238/450 (52%), Gaps = 28/450 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI----KKLVIKLNIDAVMINHDYEPQA 82
+ + I + ++ L L+ + L++R + K+I +L + I + DYE
Sbjct: 48 QADLIRRRLVVLQQELEALNIPLLVRSVDSYKDINYSLAQLCQQYQIADIYCTRDYESDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RD I L + G + + + IF + N G Y +F+ ++K WI K +
Sbjct: 108 VDRDNSIAGMLSLTGTQLHRFDYKCIFAPGTVTNGAGNTYRVFTPFKKAWIAKARGENIA 167
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
S P N L SS L + N + F S+G S L +F
Sbjct: 168 PLSAPEPVQTNALT-SSLLRQPCN--------VSFRYPQRDSVGWPIDDSAIIQRLRDFC 218
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ ++ Y+ R++P++ TS LS +L G +S R+ + + + + D G WLS
Sbjct: 219 RYRVDQYDTTRDFPAVPATSQLSPYLAIGALSPRQCLARLLVEEQSCFDKDSGGANVWLS 278
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+L+WR+FYQ I+ Y ++ K+F + I W D F W +G TG+P++D+A+
Sbjct: 279 ELVWREFYQHIIAAYTDISKGKAFLDWTETIEWNRDELL---FERWKQGRTGFPIVDAAM 335
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL +G+MHNRLRM+ ASFL+K++ I+W+WGE YF +KL D D A+NNG WQWSAS G
Sbjct: 336 RQLKDTGWMHNRLRMIVASFLVKDLHIDWRWGEQYFMSKLIDGDFAANNGGWQWSASVGT 395
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP--WKASSYKLEKAGIIL 438
+QP+FR+FNP QSKKFD FIR++L +L + +K +H P W EK GI L
Sbjct: 396 DAQPYFRVFNPTAQSKKFDPNVRFIRRWLKELESVPDKSLHEPHVWA------EKNGIEL 449
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKNILN 468
+YPKP+++H L+++ ++ + K+ N
Sbjct: 450 --SYPKPVVDHKLARERAIQMFEMAKSYQN 477
>gi|375263826|ref|YP_005026056.1| deoxyribodipyrimidine photolyase [Vibrio sp. EJY3]
gi|369844253|gb|AEX25081.1| deoxyribodipyrimidine photolyase [Vibrio sp. EJY3]
Length = 471
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/454 (34%), Positives = 247/454 (54%), Gaps = 28/454 (6%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+E + + + EL+I + D ++ S I + V LN +VM
Sbjct: 44 MAPMQADLIA--RRLEHLNQELAELNIPFLYAEVD---NFSGCSAVIGRWVKALNATSVM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
N YE D+ + L G +F + D+ + +LNK G + +FS +++ W+
Sbjct: 99 ANIHYEVNEQELDREVSDALNQSGVRFELFHDKCVHAPTTVLNKQGDYFKVFSPFKRAWL 158
Query: 134 EKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASG 193
+K + + + YP +S L S ++ K I +D F SS S
Sbjct: 159 QKFQLPRV-AKPYP-QSPL-----SPQVLKEIEGECFD-DDFTFNYPRESSEHWFASTSD 210
Query: 194 AKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
L F ++ + Y R++P+ +GTS LS +L G +S R+ + +F ++ T+
Sbjct: 211 ILNQLRTFARERSDEYREQRDFPATDGTSQLSPYLAIGALSPRQCIARLFAENEQSDLTE 270
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
G TWLS++IWR+FYQ +L P +V K F D I W +Y +K F W G T
Sbjct: 271 --GKATWLSEIIWREFYQHLLVFEPKLVKGKGFIDWEDKIQW---SYDEKAFERWKTGTT 325
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
GYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG
Sbjct: 326 GYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGEKYFMSQLVDGDFAANNGG 385
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL 431
WQWSAS+GC QP+FRIFNP+ Q +KFD G F+R ++P++ + NK++H PW + L
Sbjct: 386 WQWSASTGCDGQPYFRIFNPVSQGEKFDADGCFVRHWVPEIKSVPNKFLHKPWTWEGFSL 445
Query: 432 EKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+Y P+++H ++ L+ + K
Sbjct: 446 --------LDYHTPMVDHKAEREITLRLFKSAKE 471
>gi|340777154|ref|ZP_08697097.1| Deoxyribodipyrimidine photo-lyase [Acetobacter aceti NBRC 14818]
Length = 477
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/461 (32%), Positives = 238/461 (51%), Gaps = 30/461 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V C+ IL+P QG D + +I L LQ D L + A +
Sbjct: 32 VLCI-----TILEPEPQQGAAHDW---WRDGAIRALDAALQEKDGRLHVLRGKAEDLVPA 83
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L N AV N Y+P D IK +LK G + +S+ ++ E I + KP+
Sbjct: 84 LAKACNASAVHWNRRYDPTGRAIDTAIKTQLKSTGTEAYSFPGALLHEPWTIRTQADKPF 143
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN--NIISLND---LGF 177
+F+ + + K+ + L S P + + + H + N++ + GF
Sbjct: 144 QVFTPFWRT-ARKLGDPRPPL-SAPDTLKFASFPKTDQFHSLTPEEFNLLPTSPDWAAGF 201
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
++ + G A L F++ ++ Y+ R+YP+ S LS +LRFG ++ +
Sbjct: 202 RET------WEPGEKAAHEHLALFVEDTLRGYSEERDYPAAEACSRLSPYLRFGHVTPAQ 255
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
L + + D L++L WR+F IL+ NV +S + E+D + W +D
Sbjct: 256 LWHAVMQADASAQNKDKF-----LAELGWREFAWSILFEQANVATRSLRPEFDALPWRTD 310
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
K W G TGYPL+D+ + +L +G+MHNR+RMV ASFL+K++ I+W+ GE +F
Sbjct: 311 ---PKGLKAWQSGRTGYPLVDAGMRELWHTGWMHNRIRMVVASFLVKHLLIDWREGERWF 367
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
A+ L D D ASN NWQW+A +G + PFFRI NPI+QS+KFD +G +IR+++P+L ++
Sbjct: 368 ADTLVDHDPASNPMNWQWNAGTGVDAAPFFRIMNPILQSEKFDAEGEYIRRWVPELQRVP 427
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
IH+PW A L+ G++LG+ YP PI+EH L+++ L
Sbjct: 428 ASMIHAPWAADQEALKACGVVLGRTYPHPIIEHKLARERAL 468
>gi|388470348|ref|ZP_10144557.1| deoxyribodipyrimidine photolyase [Pseudomonas synxantha BG33R]
gi|388007045|gb|EIK68311.1| deoxyribodipyrimidine photolyase [Pseudomonas synxantha BG33R]
Length = 480
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/449 (33%), Positives = 252/449 (56%), Gaps = 33/449 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+F +++ LS L + L+IRYA A + +L +L++++V +N +Y
Sbjct: 47 KIDFWLRNLQHLSQALGELNIPLLIRYAATWDQAPAALSELCRELSVESVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L+ G F SY DQ+ F+ +L KTG + +FS ++K CY
Sbjct: 107 SQRDAAVAQTLQTQGITFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIIN--NNIISLNDLGFCKSNLSSLGI-KTGASGAKILLN 199
+ + S L V + K ++ ++ + GF + + + G A+ L+
Sbjct: 158 NR---LHSALPRQVATPKTQARLDVKSDPVPTTVDGFESPSETLRALWPAGEDEARRRLD 214
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F ++I Y R++P+ GTS LS +L G +S R+ + + + +++ IG T
Sbjct: 215 AFTDEQISYYKDERDFPAKPGTSQLSAYLAAGVVSPRQCLHAALQTNQGEFESGDIGAIT 274
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++L+WR+FY+ IL YP V +++F+ E + + W + A ++ W + TG P+ID
Sbjct: 275 WINELLWREFYKHILVGYPRVSRHRAFRPETEALAWRN---APEDLAAWQQARTGLPIID 331
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S
Sbjct: 332 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS 391
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIF+P+ QS+KFD GIFI+++LP+L+ L+ K +H+P AG +
Sbjct: 392 TGTDSAPYFRIFSPLSQSEKFDADGIFIKRWLPELATLNKKEVHNP--------AAAGGL 443
Query: 438 LG-KNYPKPILEHSLSKKNILKRYNFIKN 465
G +YP+ I++ S++ L + + +
Sbjct: 444 FGVADYPRAIVDLKASRERALAAFRRLPS 472
>gi|408483909|ref|ZP_11190128.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. R81]
Length = 481
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/449 (33%), Positives = 251/449 (55%), Gaps = 33/449 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ +LS L + L+IR A A + KL +L++++V +N +Y
Sbjct: 47 KVDFWLRNLQDLSKTLGALNIPLLIRTAATWDQAPDVLSKLCRELSVESVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + K L+ G F Y DQ+ F+ +L KTG + +FS ++K CY
Sbjct: 107 SRRDAAVSKALEADGVTFHRYLDQLFFQPGSVLTKTGTYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIIN--NNIISLNDLGFCKSNLSSLGI-KTGASGAKILLN 199
+ + S L +V + K + ++ + GF + S + G A+ L+
Sbjct: 158 TR---LHSALPRMVAAPKAQAPLKLKSDPVPNTVEGFAPPSDSLRALWPAGEDEARRRLD 214
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F ++I Y R++P+ GTS LS +L G +S R+ + + +++ +G T
Sbjct: 215 AFADQQISYYKDERDFPAKPGTSQLSAYLAAGVVSPRQCLHAALQTNGGEFESGDLGAIT 274
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++L+WR+FY+ IL YP V +++F+ E + + W + A K+ W + TG P+ID
Sbjct: 275 WINELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRN---APKDLAAWQEARTGLPIID 331
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S
Sbjct: 332 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS 391
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIF+P+ QS+KFD +G+FI+ +LP+L+ L+ K +H+P E AG +
Sbjct: 392 TGTDSAPYFRIFSPLSQSEKFDAEGVFIKHWLPELAALNKKDVHNP--------EAAGGL 443
Query: 438 LG-KNYPKPILEHSLSKKNILKRYNFIKN 465
G +YP+ I++ S++ L + + +
Sbjct: 444 FGVADYPRSIVDLKKSRERALAAFRSLPS 472
>gi|302185909|ref|ZP_07262582.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
642]
Length = 482
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 250/452 (55%), Gaps = 39/452 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + KL + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEQALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K ++ G F SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQ-----SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGA 194
CY + +P+++ S I ++ + GF + + + G + A
Sbjct: 156 CYTRMHEAMPHPIRTPKAQPAQS------IKSDTVPDQVKGFATPSKALRDLWPAGEAEA 209
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
+ ++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T
Sbjct: 210 RRRMDAFADEQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGD 269
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+G TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG
Sbjct: 270 VGTVTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELRAWQEARTG 326
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
P+ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG W
Sbjct: 327 LPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGW 386
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QWS+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ ++ K IH+P
Sbjct: 387 QWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHNP--------S 438
Query: 433 KAGIILG-KNYPKPILEHSLSKKNILKRYNFI 463
G + G +YPKPI++ S S+ L + +
Sbjct: 439 LIGDLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|424066173|ref|ZP_17803645.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|408002576|gb|EKG42820.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
Length = 482
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 246/451 (54%), Gaps = 37/451 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + KL + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHVNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ + K ++ G F SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVHKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQ-----SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAK 195
CY + +PV++ S K + + +N L L G + A+
Sbjct: 156 CYTRLHEAMPHPVRTPKAQPAQSIKSDTVPDQ----VNGFATPSKALRDL-WPAGEAEAR 210
Query: 196 ILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI 254
++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T +
Sbjct: 211 RRMDAFADEQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDV 270
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
G TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG
Sbjct: 271 GTVTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELRAWQEARTGL 327
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
P+ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG WQ
Sbjct: 328 PIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGWQ 387
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEK 433
WS+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ ++ K IH P
Sbjct: 388 WSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP--------SL 439
Query: 434 AGIILG-KNYPKPILEHSLSKKNILKRYNFI 463
G + G +YPKPI++ S S+ L + +
Sbjct: 440 IGDLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 474
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/449 (34%), Positives = 249/449 (55%), Gaps = 23/449 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F D+NIL + I R+ ++ + L + S L+I + I K
Sbjct: 31 VVGIFCLDENIL----KRDDIASARVTYMIGCLQHLQKRYKQIGSQLLIMSGKPIEAIPK 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L AV N D EP + RD+ +K+ L+ + ++ +Q++ EI T KPY
Sbjct: 87 LATFLEAKAVYWNLDVEPYSRKRDRQVKENLEAANIQVKTFWEQLLHSPEEIFTSTKKPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+++ + K W K KSN L + +K + + +K +I+ + + LGF N
Sbjct: 147 SVYTPFWKNWQGKKKSNP--LNTPVLKGLTEDQLQYTKKIGVID--LPTAKQLGFNWDN- 201
Query: 183 SSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L ++ G + A L F I +Y RN+PS++GTS LS+ L+FGTI IR +
Sbjct: 202 -KLILEPGETAALEKLEKFSNGAISSYQEQRNFPSLDGTSQLSVALKFGTIGIRTVWAKT 260
Query: 242 FKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ I+ Y ++ TW ++ WR+FYQ ++Y YP + +++ + N W+++ K
Sbjct: 261 QELIENCYSSEVFENIETWQKEIAWREFYQYVMYHYPELETGPYREHWKNFPWKNN---K 317
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF L
Sbjct: 318 AHFQAWCEGNTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQNL 377
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D DL +NNG WQWSASSG +P RIFNP+ Q++K+D +G +IR+++ +L + +Y+
Sbjct: 378 IDGDLCANNGGWQWSASSGMDPKP-LRIFNPVSQTQKYDPEGEYIRQWVCELRSVDTQYL 436
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEH 449
+ K + + E G YP PI++H
Sbjct: 437 VTG-KIPAEEREAIG------YPLPIVDH 458
>gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262]
gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262]
Length = 467
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/437 (36%), Positives = 238/437 (54%), Gaps = 26/437 (5%)
Query: 31 IFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNI-DAVMINHDYEPQAIIRDKLI 89
F S+ L N ++ L I + + +K+L K+ D V N D RD+
Sbjct: 49 FFASVAHFQQEL-NKNTHLQIMFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAA 107
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
+ SY D + E+ + Y IF+ Y KKW E++K P+K
Sbjct: 108 RAFFADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKE-------MPLK 160
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNY 208
L K KI ++ + F + +G A L NF+K+ + +Y
Sbjct: 161 VTL-------KPEKIRKESLFPNYEEQFRELIQDLPAFDSGEKAANTRLANFVKEDLADY 213
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDF 268
+ R+ P+++ TS+LS +LR G ISIR +++ ++K T+ G T+ +L WRDF
Sbjct: 214 DKARDVPALDKTSHLSRYLRTGEISIR----TVWQALQKEEATE--GRATFEKELCWRDF 267
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGY 328
Y MI +P N+ ++ Y I WE++ ++ F W G TG+PL+D+A+ QL +G+
Sbjct: 268 YNMIYVSFPKQKNEPIQENYRFIEWENN---REFFKKWQDGQTGFPLVDAAMRQLKETGW 324
Query: 329 MHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRI 388
MHNRLRM+TASFL K++ I+W++GE YF L D+D ASN G WQW+AS+G + P+FRI
Sbjct: 325 MHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRI 384
Query: 389 FNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
FNP QS+KFD G FIRKY+ +L L +K+IH P K S + ++ G+ILGK+YP PI++
Sbjct: 385 FNPTTQSEKFDPDGTFIRKYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIID 444
Query: 449 HSLSKKNILKRYNFIKN 465
H +K + RY F K
Sbjct: 445 HKERRKLAIARYEFSKE 461
>gi|298159718|gb|EFI00760.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 482
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 148/448 (33%), Positives = 247/448 (55%), Gaps = 31/448 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K L+ G + SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL--GFCKSNLSSLGI-KTGASGAKIL 197
CY + + + V + K + ++ S+ D GF + + + G + A+
Sbjct: 156 CYNRMH---QAMPQPVRTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLWPAGEAEARRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F +I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 VATFADAQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGLFIKRWLPELADLNRKQIHDP-------ASIGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFDAADYPKPIVDLSKSRARALAAFKAL 470
>gi|448633777|ref|ZP_21674276.1| deoxyribodipyrimidine photolyase [Haloarcula vallismortis ATCC
29715]
gi|445750468|gb|EMA01906.1| deoxyribodipyrimidine photolyase [Haloarcula vallismortis ATCC
29715]
Length = 465
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 240/458 (52%), Gaps = 32/458 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD+ +LD S R+ F+ ++ L ++ DSDL+I + + +
Sbjct: 27 VVPVFVFDRAVLDHAGSP------RVAFMLDALDSLREWYRDRDSDLVIAEGDPTNVLPE 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + V DY A RD +++ L + ++ V+ E EI G PY
Sbjct: 81 LAAEYGAEKVTWGKDYSGLARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+++ +KW ++ K S + +L + + +L DLGF +
Sbjct: 141 SVFTYFGRKWHDREKDTAYEPPS------------ADELADVDGDAPPTLADLGFEEPEA 188
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
G A+ LL++F+ + + Y R++P+ TS LS HL+FGTI IR++ +
Sbjct: 189 DV--PTAGTDEARALLDDFLDENVYEYEERRDFPADECTSRLSAHLKFGTIGIREVYERT 246
Query: 242 --FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
K + + + F SQL WR+FY +L+ +P+VV+ ++K + I WE+D
Sbjct: 247 QDAKEGTGGDRRESVREFQ--SQLAWREFYTQVLFAHPHVVSSNYKSYENPIEWEND--- 301
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
++ W G TGYP++D+ + QL YMHNR+RM+ ASFL K++ I+W+ G +F K
Sbjct: 302 EELLQAWKDGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLIDWRHGYEWFREK 361
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D D A++NG WQW+AS+G +QP+FRIFNP+ Q + +D +I++Y+P+L + +
Sbjct: 362 LVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPNAEYIKEYVPELQDAAPEV 421
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
IH W S ++ YP P+++HS ++ L
Sbjct: 422 IHD-WNECSLTQRRSA---APEYPDPVVKHSERREEAL 455
>gi|254505847|ref|ZP_05117992.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16]
gi|219551070|gb|EED28050.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16]
Length = 465
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 254/449 (56%), Gaps = 31/449 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I + ++EL L + LI Y+ + + V + + V +N +YE
Sbjct: 39 QADLIKRRLVELKSELSELNIPLIYSEAPDYSSSVDVVLSWVKQYGVTNVHVNKEYELNE 98
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RD + +L +G Y D+ F ++NK G + +F+ Y++ +++K
Sbjct: 99 VSRDDKAESKLSELGVPLHRYDDKCHFAPGSVVNKQGHYFKVFTPYKRAYLQK------- 151
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L+ YPV+ + + + +L + + I +D+ F S + LL F+
Sbjct: 152 LEQYPVQ--VQKVKGAVELGRELRPQDILQHDMTFSYPTECSDVYPVKTTQILELLRAFV 209
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK-LVKLIFKFIKKHYKTDCIGYFTWL 260
++ +Y +R++PSI GTS LS++L G +S+R+ + +L+++ I + G TWL
Sbjct: 210 NERSDDYQADRDFPSIEGTSRLSLYLAIGALSVRQCMARLLYEQILPLSE----GRQTWL 265
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
S+LIWR+FYQ ++Y P + +SF ++ W++D +K W +G TGYP++D+A
Sbjct: 266 SELIWREFYQHLIYFEPKLSRGESFLPWGRHLTWQND---EKRIQAWKEGMTGYPIVDAA 322
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QLN +G+MHNRLRM+ ASFLIK++ ++W+ GE+YF +KL D + ++NNG WQW AS+G
Sbjct: 323 MRQLNQTGWMHNRLRMIAASFLIKDLQVDWRIGEDYFMSKLIDGEYSANNGGWQWCASTG 382
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
C QP+FRIFNP Q ++FD +G F+R ++P+L + +KYIH P K ++ K G
Sbjct: 383 CDGQPYFRIFNPTTQGERFDPKGDFVRHWVPELKNVPDKYIHQPSKWANAK--------G 434
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILN 468
+YP PI++H ++ L Y K+ ++
Sbjct: 435 VSYPSPIVDHKAQREITLANYKNAKDFMD 463
>gi|422631808|ref|ZP_16696988.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330941669|gb|EGH44445.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 482
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 249/452 (55%), Gaps = 39/452 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + KL + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K ++ G F SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQ-----SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGA 194
CY + +PV++ S I ++ + GF + + + G + A
Sbjct: 156 CYTRLHEAMPHPVRTPKAQPAQS------IKSDAVPDQVKGFATPSKALRDLWPAGEAEA 209
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
+ ++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T
Sbjct: 210 RRRMDAFADEQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGD 269
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+G TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG
Sbjct: 270 VGTVTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELRAWQEARTG 326
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
P+ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG W
Sbjct: 327 LPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGW 386
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QWS+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ ++ K IH P
Sbjct: 387 QWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP--------S 438
Query: 433 KAGIILG-KNYPKPILEHSLSKKNILKRYNFI 463
G + G +YPKPI++ S S+ L + +
Sbjct: 439 LIGDLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|254428910|ref|ZP_05042617.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
gi|196195079|gb|EDX90038.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
Length = 501
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 139/475 (29%), Positives = 248/475 (52%), Gaps = 33/475 (6%)
Query: 1 MEVYCVFI--FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASK 58
+ VYC+ +D++ + PLR ++E + + +++ I+L ++D +A +
Sbjct: 36 LAVYCLCQGQWDRHQVAPLRRWYVLES--VRELGEALARRGIDLHVLEADT---FAAVPE 90
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
+ + + + + N +Y RDK + + L+ G + D V+ +
Sbjct: 91 VLAQFAQEHGVTHLYCNREYPLNEKQRDKAVAERLRGQGVSLQGFDDGVLVPPAALRTGK 150
Query: 119 GKPYSIFSFYQKKW-IEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
G PY++F Y+K+W + + + P + N V ++ +++ + +L+
Sbjct: 151 GTPYTVFGAYKKRWDVWMADHHPAVTPAPPESDHRGNFVGAA----VVDKALKALS---- 202
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
L+ + G A L+ F+++ + Y R++P I GTS LS L G +S+
Sbjct: 203 VPEALTQQWLP-GEEAAWQQLDQFVEQALAGYRRQRDFPDIAGTSGLSAALSAGALSVAS 261
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWES 295
+ + + D G W+ +L WRDFY+ I+ +P V ++F+ E D + W+
Sbjct: 262 CYRAASQAMADAGSRD--GATCWIGELAWRDFYRQIMAQFPRVSRGQAFRPETDLLQWDQ 319
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
D+ + F WC+G TGYPL+D+A+ QL ++G+MHNRLRMVTA FL K++ ++W+ GE +
Sbjct: 320 DD---ERFAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRMVTAMFLSKHLWLDWRRGEAF 376
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F L D D A+NNG WQWSAS+G + P+FR+FNP+ Q ++FD +G FI +++P+L L
Sbjct: 377 FMAHLMDGDFAANNGGWQWSASAGTDAVPYFRVFNPVRQGQRFDSEGRFIARWVPELRGL 436
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+K IH PWK +L +YP PI+ H+ ++ + + K ++
Sbjct: 437 DSKQIHEPWKQP---------LLAPDYPPPIVPHAGVRERVTTAFKAAKTQFDQE 482
>gi|386715963|ref|YP_006182287.1| deoxyribodipyrimidine photo-lyase [Halobacillus halophilus DSM
2266]
gi|384075520|emb|CCG47015.1| deoxyribodipyrimidine photo-lyase [Halobacillus halophilus DSM
2266]
Length = 480
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/398 (36%), Positives = 224/398 (56%), Gaps = 23/398 (5%)
Query: 57 SKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN 116
S +LV K ++AV N D + RD +K+ L + FSY D + E+
Sbjct: 80 SAAFAQLVEKHQVEAVYYNRDESGFGLKRDHEVKEYLNDSDVQVFSYIDHHMHGAKEVTK 139
Query: 117 KTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
KTG Y +F+ Y K+W + LQ V+ V +L ++ + D
Sbjct: 140 KTGGYYKVFTPYYKQWKQ--------LQKPAVQK-----VDHERLSQLAVDKNDEFEDGY 186
Query: 177 FCKSNLSSLGI----KTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGT 231
NL S K G + A +F+ + I Y R++P+++GTS +S LR G
Sbjct: 187 KAYKNLISKTTREFDKVGENNALDHFYDFLDEAIYEYEKERDFPAVDGTSRMSRFLRTGA 246
Query: 232 ISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNI 291
ISIR + LI + Y+ + G T++S+L WRDFY MI + YPN ++ ++Y +
Sbjct: 247 ISIRTVYHLIHDQVD--YRKNTEGVETYISELAWRDFYNMIYHFYPNAGDEEMVEKYRGL 304
Query: 292 LWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKW 351
W NY + F W +G TG+P+ID+A+ Q+N +G+MHNRLRM ASFL K++ ++W+
Sbjct: 305 PW---NYDEDLFNQWKEGRTGFPIIDAAMRQMNETGWMHNRLRMAVASFLTKDLLMDWRA 361
Query: 352 GENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQ 411
GE YFA +L D+D ASN G WQW+AS+G P+FR+FNP QS++FD G FI++++P+
Sbjct: 362 GERYFAEQLIDYDPASNIGGWQWAASTGTDPVPYFRVFNPTRQSERFDPHGRFIKEWVPE 421
Query: 412 LSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
L + KYIH P K S E+A ++G++YP+P+++H
Sbjct: 422 LIDVDKKYIHEPAKMSEKDQEQANCVIGEDYPEPMVDH 459
>gi|422665171|ref|ZP_16725043.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|330975589|gb|EGH75655.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 482
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 249/452 (55%), Gaps = 39/452 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + KL + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGALNVPLLIREADSWDQAPEVLAKLCAQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K ++ G F SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQ-----SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGA 194
CY + +PV++ S I ++ + GF + + + G + A
Sbjct: 156 CYTRLHEAMPHPVRTPKAQPAQS------IKSDAVPDQVKGFATPSKTLRDLWPAGEAEA 209
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
+ ++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T
Sbjct: 210 RRRMDAFADEQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGD 269
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+G TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG
Sbjct: 270 VGTVTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELRAWQEARTG 326
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
P+ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG W
Sbjct: 327 LPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGW 386
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QWS+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ ++ K IH P
Sbjct: 387 QWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP--------S 438
Query: 433 KAGIILG-KNYPKPILEHSLSKKNILKRYNFI 463
G + G +YPKPI++ S S+ L + +
Sbjct: 439 LIGDLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|15675407|ref|NP_269581.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SF370]
gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|410680903|ref|YP_006933305.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
M1 GAS]
gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|395454290|dbj|BAM30629.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 476]
gi|409693492|gb|AFV38352.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
Length = 469
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 243/463 (52%), Gaps = 31/463 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CVF F+K L+ L S R S++ L+ DL + Y ++L+
Sbjct: 31 CVFQFNKEQLNLLHS------RNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCFEQLL 84
Query: 65 IKL-NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYS 123
+L + V N+D +RD+ + K G +Y+D + EI+N++G+PY
Sbjct: 85 TQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYK 144
Query: 124 IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS 183
+F+ Y + W Q+YP ++ + + + + + + F
Sbjct: 145 VFTPYYRIW-----------QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQ 193
Query: 184 SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ AS LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR + +
Sbjct: 194 DVATFDEASKQ---LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 250
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + +G T+L +L WRDFY M+ YP+ + +K + I W ++
Sbjct: 251 Q------APNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---PDW 301
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE YF +L D
Sbjct: 302 FQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLID 361
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D ASN G WQW+AS+G + P+FRIFNP+ Q K+FD +G FI+ YLPQL + KY+H
Sbjct: 362 YDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHE 421
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PWK E I+G +YP+PI++H+ ++ + +Y + K
Sbjct: 422 PWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKE 464
>gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232]
gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS8232]
gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
Length = 469
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 243/463 (52%), Gaps = 31/463 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CVF F+K L+ L S R S++ L+ DL + Y ++L+
Sbjct: 31 CVFQFNKEQLNLLHS------RNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCFEQLL 84
Query: 65 IKL-NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYS 123
+L + V N+D +RD+ + K G +Y+D + EI+N++G+PY
Sbjct: 85 TQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYK 144
Query: 124 IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS 183
+F+ Y + W Q+YP ++ + + + + + + F
Sbjct: 145 VFTPYYRIW-----------QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQ 193
Query: 184 SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ AS LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR + +
Sbjct: 194 DVATFDEASKQ---LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 250
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + +G T+L +L WRDFY M+ YP+ + +K + I W ++
Sbjct: 251 Q------APNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---PDW 301
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE YF +L D
Sbjct: 302 FQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLID 361
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D ASN G WQW+AS+G + P+FRIFNP+ Q K+FD +G FI+ YLPQL + KY+H
Sbjct: 362 YDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHE 421
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PWK E I+G +YP+PI++H+ ++ + +Y + K
Sbjct: 422 PWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKE 464
>gi|335035151|ref|ZP_08528494.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
gi|333793582|gb|EGL64936.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
Length = 479
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/449 (33%), Positives = 249/449 (55%), Gaps = 16/449 (3%)
Query: 18 RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHD 77
+S G + + ++ S+ LS +L+ L++ A + ++ L+ + D V+ N
Sbjct: 42 KSAGPLGGAQEWWLHHSLAALSSSLEKAGGRLVLASGDAERILRDLISETGADTVVWNRR 101
Query: 78 YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
Y+P + DK K++L+ G S+ Q++ E + + K+G PY +++ +++ +E
Sbjct: 102 YDPTGMATDKAFKQKLRDDGLTVQSFSGQLLHEPSRLQTKSGGPYRVYTPFRRA-LEG-- 158
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN-DLGFCKSNLSSLGIKTGASGAKI 196
+ + + KS V K K+ + ++ D S++ + G +GAK
Sbjct: 159 GEEPHAPADAPKSLKAPEVWP-KSEKLADWKLLPTKPDWAKDFSDIWT----PGENGAKD 213
Query: 197 LLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIG 255
L++FI +K Y R++P+ TS LS HL G IS V K + +H ++ I
Sbjct: 214 KLDDFIDGALKGYEEGRDFPAKPATSLLSSHLAAGEISP-AAVWHATKGLSRHIASNDIS 272
Query: 256 YFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
F +++WR+F +L+ +P + K++ +D W D + +F W +G TGYP+
Sbjct: 273 RFR--KEIVWREFCYHLLFHFPELDEKNWNDSFDAFPWRDD---ETSFKAWTRGMTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL G MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D ASN NWQW
Sbjct: 328 VDAGMRQLWQHGIMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWV 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
A SG + PFFRIFNPI+Q +KFD G ++R+++P+L KL KYIH P++A L+KAG
Sbjct: 388 AGSGADASPFFRIFNPILQGEKFDGDGDYVRRFVPELEKLERKYIHKPFEAPKDVLKKAG 447
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ LGK YP PI++H +++ L Y +K
Sbjct: 448 VELGKTYPLPIVDHGKARERALAAYAAVK 476
>gi|229588295|ref|YP_002870414.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25]
gi|229360161|emb|CAY47018.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25]
Length = 481
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 251/449 (55%), Gaps = 33/449 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ LS L + L+IR A A + + +L +L++++V +N +Y
Sbjct: 47 KVDFWLRNLHALSATLGELNIPLLIRTAATWDQAPRVLSQLCQELSVESVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + K L+ G F SY DQ+ F+ +L KTG + +FS ++K CY
Sbjct: 107 SRRDAAVSKALEAQGVSFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIIN--NNIISLNDLGFCKSNLSSLGI-KTGASGAKILLN 199
+ + S L +V + K + ++ I GF + + + G A+ L+
Sbjct: 158 SR---LHSALPRIVAAPKAQAALTLKSDPIPTTVEGFEPPSQALRALWPAGEDEARRRLD 214
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F ++I Y R++P+ GTS LS +L G +S R+ + + +++ +G T
Sbjct: 215 AFADQQISYYKDERDFPAKPGTSQLSAYLAAGVVSPRQCLHAALQTNGGEFESGDMGAIT 274
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++L+WR+FY+ IL YP V +++F+ E + + W + A K+ W + TG P+ID
Sbjct: 275 WINELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRN---APKDLAAWQEARTGLPIID 331
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S
Sbjct: 332 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS 391
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIF+P+ QS+KFD G+FI+ +LP+L+ L+ K +H+P + AG +
Sbjct: 392 TGTDSAPYFRIFSPLSQSEKFDSDGVFIKHWLPELAALNKKDVHNP--------DAAGGL 443
Query: 438 LG-KNYPKPILEHSLSKKNILKRYNFIKN 465
G +YP+ I++ S++ L + + +
Sbjct: 444 FGVADYPRSIVDLKKSRERALAAFRSLPS 472
>gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652]
gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652]
Length = 482
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/437 (32%), Positives = 243/437 (55%), Gaps = 15/437 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L+ L++ A ++ L+ + + DAV N Y+P I D I
Sbjct: 58 WLHHSLEALDGSLRKRRGGLLLASGEALGVLRSLIRQSDADAVFWNRRYDPPGISIDAHI 117
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
+ EL+ + S+ Q++ E ++++ +G PY +++ + W +S + P K
Sbjct: 118 EHELEKQAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPF---WRALERSIEPEPLDIPSK 174
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNY 208
L + + S+ K+ + ++S SN + L G GA+ L FI+ ++ Y
Sbjct: 175 LQLASKLPGSE--KLESWKLLSTQP--DWASNFADL-WTPGEEGAQEKLRTFIEDRLDGY 229
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDF 268
NR+YP+ TS LS HL G IS ++ + + KH I +F ++ WRDF
Sbjct: 230 KENRDYPAKPATSMLSPHLALGEISPARIWDAT-RGLSKHLPAADIVHFR--KEIAWRDF 286
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGY 328
+L +P + ++ +D W S A+++F W +G TGYP++D+ + QL G+
Sbjct: 287 SYHLLAHFPRLATANWDDRFDRFEWGS---AEEDFNAWSRGMTGYPIVDAGMRQLWRYGW 343
Query: 329 MHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRI 388
MHNR+RM+ ASFLIK++ ++W+ GE +F + L D D A+N +WQW A SG + PFFR+
Sbjct: 344 MHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRV 403
Query: 389 FNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
FNP++Q +KFD G F+R ++P+L KL KYIH P++A L+ A +ILG+ YP+P+++
Sbjct: 404 FNPVLQGEKFDPDGDFVRSHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVD 463
Query: 449 HSLSKKNILKRYNFIKN 465
H+ ++K L YN I+
Sbjct: 464 HAGARKRALAAYNAIRG 480
>gi|398866188|ref|ZP_10621688.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM78]
gi|398241525|gb|EJN27175.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM78]
Length = 488
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 155/451 (34%), Positives = 247/451 (54%), Gaps = 30/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ LS L + L+IR A A + +L +L IDAV N +Y
Sbjct: 54 KVDFWLRNLQVLSGALGQLNIPLLIRNAPRWDDAPNVLLELCRQLQIDAVHFNEEYGIHE 113
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L+ G + Y DQ++F+ +L KTG + +FS ++K E++ +
Sbjct: 114 TRRDAAVAQTLEAEGIEVRRYLDQLLFKPGSVLTKTGSYFQVFSQFRKVCHERLHHSLPG 173
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
L P N I ++ I+ GF S + G A+ L++F
Sbjct: 174 LVRTPAAQAALN----------IASDAIATRVEGFDPPPDSLRELWPAGEDEARRRLDSF 223
Query: 202 IK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ +I Y R++P+ GTS LS +L G IS R+ + + + ++ +G TW+
Sbjct: 224 TEMQIDYYQSERDFPAKPGTSQLSAYLAAGVISPRQCLHAAMQSNQGEIESGKVGAVTWI 283
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W + A + W +G TG P+ID+A
Sbjct: 284 NELLWREFYKHILVGYPRVSRHRAFRPETEALAWRN---APEELAAWQQGRTGLPIIDAA 340
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 341 MRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTG 400
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS+KFD +G+FI+ +LPQLS L K +H+P + G+
Sbjct: 401 TDSAPYFRIFNPLSQSEKFDAEGLFIKHWLPQLSGLDKKAVHNP-------AQLGGLFGV 453
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP PI++ S S+ L + KN+ +R
Sbjct: 454 PDYPPPIVDLSTSRARALAAF---KNLPSRQ 481
>gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
Length = 477
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 243/463 (52%), Gaps = 31/463 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CVF F+K L+ L S R S++ L+ DL + Y ++L+
Sbjct: 39 CVFQFNKEQLNLLHS------RNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCFEQLL 92
Query: 65 IKL-NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYS 123
+L + V N+D +RD+ + K G +Y+D + EI+N++G+PY
Sbjct: 93 TQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYK 152
Query: 124 IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS 183
+F+ Y + W Q+YP ++ + + + + + + F
Sbjct: 153 VFTPYYRIW-----------QNYPKETPIKVELSQDRWLNLETPDDVLRTVESFKDEKYQ 201
Query: 184 SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ AS LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR + +
Sbjct: 202 DVATFDEASKQ---LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 258
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + +G T+L +L WRDFY M+ YP+ + +K + I W ++
Sbjct: 259 Q------APNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---PDW 309
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE YF +L D
Sbjct: 310 FQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLID 369
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D ASN G WQW+AS+G + P+FRIFNP+ Q K+FD +G FI+ YLPQL + KY+H
Sbjct: 370 YDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHE 429
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PWK E I+G +YP+PI++H+ ++ + +Y + K
Sbjct: 430 PWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKE 472
>gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
Length = 477
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 243/463 (52%), Gaps = 31/463 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CVF F+K L+ L S R S++ L+ DL + Y ++L+
Sbjct: 39 CVFQFNKEQLNLLHS------RNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCFEQLL 92
Query: 65 IKL-NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYS 123
+L + V N+D +RD+ + K G +Y+D + EI+N++G+PY
Sbjct: 93 TQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYK 152
Query: 124 IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS 183
+F+ Y + W Q+YP ++ + + + + + + F
Sbjct: 153 VFTPYYRIW-----------QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQ 201
Query: 184 SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ AS LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR + +
Sbjct: 202 DVATFDEASKQ---LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 258
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + +G T+L +L WRDFY M+ YP+ + +K + I W ++
Sbjct: 259 Q------APNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---PDW 309
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE YF +L D
Sbjct: 310 FQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLID 369
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D ASN G WQW+AS+G + P+FRIFNP+ Q K+FD +G FI+ YLPQL + KY+H
Sbjct: 370 YDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHE 429
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PWK E I+G +YP+PI++H+ ++ + +Y + K
Sbjct: 430 PWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKE 472
>gi|448439506|ref|ZP_21588070.1| deoxyribodipyrimidine photolyase [Halorubrum saccharovorum DSM
1137]
gi|445691040|gb|ELZ43235.1| deoxyribodipyrimidine photolyase [Halorubrum saccharovorum DSM
1137]
Length = 495
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 140/482 (29%), Positives = 244/482 (50%), Gaps = 35/482 (7%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV F+FD ++LD D R+ + + L + ++ SDL++ +
Sbjct: 26 EVAGAFVFDPDVLD------HASDVRVRRLLDGLAALRDDYRDRGSDLLVARGDPESILP 79
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L ++ D V+ N DY A RD ++K L G + ++ D V+ E + I G P
Sbjct: 80 DLADAVDADRVVWNRDYSGLARERDAGVRKALNDSGVEREAHHDAVLHEPDSIRTNAGDP 139
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHS-----------SKLHKIINNNII 170
YS++++Y KKW ++ + + + L + ++ ++ ++
Sbjct: 140 YSVYTYYWKKWTDRETDSPAPTPAAGDLVDVGALTAAVGDDGAVADGGAETDRVAVGDLP 199
Query: 171 SLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRF 229
S DLGF + + +G G A+ L++F+ + + +Y R+YP+ TS LS L++
Sbjct: 200 SPADLGFDAPD-AEVG-PAGTEAARGRLDDFLDEPVFSYEAERDYPAREATSRLSAFLKY 257
Query: 230 GTISIRKLVKLIFKFIK------KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKS 283
G I IR+ + + + + + + F QL WR+FY +LY P VV ++
Sbjct: 258 GEIGIRETYEATERALAAAQSEGDEERVESVEEFQ--QQLAWREFYTQVLYHNPEVVTEN 315
Query: 284 FKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK 343
+K+ + I W D W +G TGYP++D+ + QL +MHNR+RM+ ASFL K
Sbjct: 316 YKEYEEGIEWRDD---PDEITAWTRGETGYPIVDAGMRQLREEAFMHNRVRMIVASFLTK 372
Query: 344 NMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGI 403
++ +W+ G ++F L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D +
Sbjct: 373 DLLADWRHGYDHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPEAE 432
Query: 404 FIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+I +Y+P+L L IH W S ++A + YP+PI++HS ++ L Y
Sbjct: 433 YITEYVPELRGLDADLIHE-WHELS-PTQRANV--APEYPEPIVDHSERREEALAMYKRA 488
Query: 464 KN 465
+
Sbjct: 489 RG 490
>gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
Length = 459
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 166/456 (36%), Positives = 253/456 (55%), Gaps = 39/456 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V FIFD +++ +F+ +S+ +L L + + L + + IA +
Sbjct: 33 VIPCFIFDPRLIE---KNDNFNPNSFQFLIESLEDLKHQLNDKGAKLYLFHGIAENVVTN 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ K IDAV +N DY P + RD+ KK ++ F S D ++ ++I + G PY
Sbjct: 90 LINKNLIDAVFVNRDYTPFSKKRDEAFKKACEMYNVDFISCNDLLLNNPDKIKTQKGTPY 149
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++F+ + KK K N P S N ++ K+ +N+ L K N
Sbjct: 150 TVFTPFFKK-ASKFDVN------LPEMSSKQNF-YTGKIENELNDTDHFLK----AKRN- 196
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
L +K G S A +L N + + KNY R+YP ++ T+ LS H +FGTISIR+ +
Sbjct: 197 KPLYVKGGRSNALKILEN-LDEFKNYENERDYPFLDATTGLSAHNKFGTISIREFYYTVI 255
Query: 243 KFIKKHYKTDCIG-YFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
D +G ++QL WRDFY + + YP + +SFKK++D+I W++D+
Sbjct: 256 ---------DKLGISHPLITQLYWRDFYTYLAHHYPYIFKQSFKKKFDSIEWDNDS---D 303
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WC G TG+P++D+ I ++N +GYMHNR+RM+TASFL+K++ I+WKWGE YFA KL
Sbjct: 304 KFKKWCAGETGFPIVDAGIREMNYTGYMHNRVRMITASFLVKDLHIDWKWGEQYFARKLV 363
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+D + N GNWQWSAS+G +QPFFRIFNP Q KKFD + I+I+K++ +L +S K IH
Sbjct: 364 DYDKSVNIGNWQWSASTGPDAQPFFRIFNPWSQQKKFDSECIYIKKWIEELRNVSCKSIH 423
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
+ LE + YP+PI+ H ++ L
Sbjct: 424 N--------LENKNTFI-PGYPEPIINHKTEREKSL 450
>gi|398992808|ref|ZP_10695769.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM21]
gi|398136264|gb|EJM25356.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM21]
Length = 487
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 153/451 (33%), Positives = 253/451 (56%), Gaps = 32/451 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+++F +++ ELS L + L+IR A E +++ +L IDAV +N +Y
Sbjct: 54 KVDFWLRNLSELSRALGELNIPLLIRKASRWDEAPTVLLDLCQQLKIDAVHVNEEYGIHE 113
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKV-KSNKC 141
RD + + LK G F SY DQ++F+ +L +TG + +FS ++K E++ +S
Sbjct: 114 SRRDAAVAQALKANGIDFCSYLDQLLFKPGTVLTRTGTYFQVFSQFRKVCYERLHRSTPE 173
Query: 142 YLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNN 200
+ + V++ L I+++ + + GF + S + G + A+ L+
Sbjct: 174 RVCAPGVQAPL-----------AISSDTLPSSVEGFATPSDSLRKLWPAGETEARRRLDT 222
Query: 201 FI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F +I Y R++P+ GTS LS +L G IS R+ + + + +++ +G TW
Sbjct: 223 FADAQIDYYKDERDFPAKPGTSQLSAYLAAGVISPRQCLHAALQSNQGEFESGNVGAVTW 282
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+++L+WR+FY+ IL YP V +++F+ E + + W A + W + TG P+ID+
Sbjct: 283 INELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APQELRAWQEARTGLPIIDA 339
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+
Sbjct: 340 AMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSST 399
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G + P+FRIFNP+ QS+KFD QG+FI+ +LP+L+ L+ K +H+P G+
Sbjct: 400 GTDAAPWFRIFNPLSQSEKFDAQGVFIKHWLPELAGLNKKDVHNP-------ANLGGLFG 452
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKNILNR 469
+YP PI+ S S++ L + KN+ R
Sbjct: 453 VADYPSPIVNLSTSRQRALAAF---KNLPAR 480
>gi|422671627|ref|ZP_16730993.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aceris
str. M302273]
gi|330969367|gb|EGH69433.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aceris
str. M302273]
Length = 482
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 248/452 (54%), Gaps = 39/452 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K ++ G F SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQ-----SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGA 194
CY + +PV++ S K ++ + GF + + + G + A
Sbjct: 156 CYTRLHEAMPHPVRTPQAQAAQSMK------SDAVPEQVKGFATPSKALRDLWPAGEAEA 209
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
+ ++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T
Sbjct: 210 RRRMDAFADEQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGD 269
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+G TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG
Sbjct: 270 VGTVTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELRAWQEARTG 326
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
P+ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG W
Sbjct: 327 LPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGW 386
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QWS+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ ++ K IH P
Sbjct: 387 QWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP--------S 438
Query: 433 KAGIILG-KNYPKPILEHSLSKKNILKRYNFI 463
G + G +YPKPI++ S S+ L + +
Sbjct: 439 LIGDLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|383480261|ref|YP_005389155.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|383494243|ref|YP_005411919.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
gi|378928251|gb|AFC66457.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|378929970|gb|AFC68387.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
Length = 469
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 243/463 (52%), Gaps = 31/463 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
CVF F+K L+ L S R S++ L+ DL + Y ++L+
Sbjct: 31 CVFQFNKEQLNLLHS------RNQSSFITSVLAFRKLLKCEGIDLYLMYGDLMTCFEQLL 84
Query: 65 IKL-NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYS 123
+L + V N+D +RD+ + K G +Y+D + EI+N++G+PY
Sbjct: 85 TQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYK 144
Query: 124 IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS 183
+F+ Y + W Q+YP ++ + + + + + + F
Sbjct: 145 VFTPYYRIW-----------QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDKKYQ 193
Query: 184 SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+ AS LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR + +
Sbjct: 194 DVATFDEASKQ---LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 250
Query: 243 KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ + +G T+L +L WRDFY M+ YP+ + +K + I W ++
Sbjct: 251 Q------APNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---PDW 301
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE YF +L D
Sbjct: 302 FQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLID 361
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
+D ASN G WQW+AS+G + P+FRIFNP+ Q K+FD +G FI+ YLPQL + KY+H
Sbjct: 362 YDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHE 421
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
PWK E I+G +YP+PI++H+ ++ + +Y + K
Sbjct: 422 PWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKE 464
>gi|405377862|ref|ZP_11031797.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF142]
gi|397325650|gb|EJJ29980.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF142]
Length = 484
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 239/442 (54%), Gaps = 24/442 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L L+ + LI+ A + ++ + +AV N Y+P I D +
Sbjct: 59 WLHHSLHALDAALKKHGGKLILASGHARHALADIIRRSGAEAVFWNRRYDPPGIAIDTRL 118
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQ----- 144
K E + + S+ Q++ E + +G Y +++ + + +E+ + +
Sbjct: 119 KHEFEKQAIEARSFGGQLLHEPTRLKTTSGTSYRVYTPFWRA-LEEGGEPEAPVDVPERF 177
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK 204
+P + + ++ S KL + N S D+ G + A+ L+ F++
Sbjct: 178 RFPKQFPASEVLASWKLLPLKPNWAKSFPDM-----------WTPGEAAAQEKLSAFVED 226
Query: 205 -IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
+ Y+ +R++P TS LS HL G IS ++ + + + +D I F +L
Sbjct: 227 GLSGYSADRDFPGKTATSLLSPHLALGEISPARIWDAT-EGLSRRIPSDDIVRFR--KEL 283
Query: 264 IWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+F +L+ +P + ++ +D W D + F WC G TGYP++D+ + QL
Sbjct: 284 AWREFSYHLLFHFPELARDNWNDSFDGFGWRED---EDGFHAWCNGQTGYPIVDAGMRQL 340
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
G+MHNR+RM+TASFLIK++ ++W+ GE +F + L D D ASN +WQW A SG +
Sbjct: 341 WRHGWMHNRVRMITASFLIKDLLVDWRRGEAWFRDTLVDADPASNAASWQWVAGSGADAS 400
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYP 443
PFFRIFNP++Q +KFD G +IR+++P+L KL +KYIH P++A + LE AG+ LGK YP
Sbjct: 401 PFFRIFNPMLQGEKFDADGSYIRQFVPELGKLEDKYIHRPFEAPASVLENAGVTLGKTYP 460
Query: 444 KPILEHSLSKKNILKRYNFIKN 465
+PI++H+ +++ LK Y+ IK+
Sbjct: 461 RPIVDHATARRRALKVYSAIKD 482
>gi|396460178|ref|XP_003834701.1| hypothetical protein LEMA_P068440.1 [Leptosphaeria maculans JN3]
gi|312211251|emb|CBX91336.1| hypothetical protein LEMA_P068440.1 [Leptosphaeria maculans JN3]
Length = 811
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 155/452 (34%), Positives = 242/452 (53%), Gaps = 23/452 (5%)
Query: 22 IIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHD 77
++ + +F +S+ LS L D L I KE+ +++L N+ V N +
Sbjct: 361 LVSPAKCDFELRSVEALSKELNELDIPLHIETVSRRKEVAYRMVELAQEWNVKNVYCNLE 420
Query: 78 YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
YEP + R++ + + + G F D + + GK Y+++S + + W+ +
Sbjct: 421 YEPDELRREERLVRLMLQKGINFDPQHDDCVVPPGSLKTGGGKQYAVYSPWFRSWLAHLH 480
Query: 138 SNKCYL--QSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC----KSNLSSLGIKTGA 191
++ L ++ P K N + K+ ++ I L + + L A
Sbjct: 481 AHPHLLNERTMPEK---NPSGFRERFAKLFDSTIPELPESKSLTEDQRKQFHHLWPAGEA 537
Query: 192 SGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF-IKKHYK 250
+ + L +K+ YN RN+P++N T +S H GT++ R V+L K
Sbjct: 538 AAIERLRRFLTEKVAKYNDTRNFPNLNSTGRVSAHHAAGTLAARTSVRLARDMNTSKKLD 597
Query: 251 TDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKG 309
G W+S++ WRDFY+ +L +P V +NK FK EY NI WE Y +F +W +G
Sbjct: 598 GGKDGIKVWISEVAWRDFYRHVLVHWPYVCMNKPFKYEYTNIEWE---YNDPHFRSWTQG 654
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TGYP++D+A+ LN + YMHNRLRM+TASFL K++ ++W+ GE YF + L D D ASNN
Sbjct: 655 KTGYPIVDAAMRSLNQTAYMHNRLRMITASFLAKHLLLDWRLGEQYFISHLIDGDFASNN 714
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSY 429
G W +SAS+G QP+FRIFNP +QS+KFD +G FIRK++P+L + IH+P+ A
Sbjct: 715 GGWGFSASTGVDPQPYFRIFNPWLQSEKFDAEGDFIRKWVPELQGVEGAAIHNPYAAGG- 773
Query: 430 KLEKAGIILGKN-YPKPILEHSLSKKNILKRY 460
KA I KN YP+PI+EH +++ L RY
Sbjct: 774 ---KAAQIAKKNRYPEPIVEHKFARERCLARY 802
>gi|269962802|ref|ZP_06177143.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832492|gb|EEZ86610.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 471
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 149/457 (32%), Positives = 253/457 (55%), Gaps = 34/457 (7%)
Query: 9 FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLN 68
+ ++ + P+++ I RR+ + + + EL++ L + + +++ ++ IK + LN
Sbjct: 39 WQEHHMAPMQADLIA--RRLTHLEEELTELNVPLLYKE---VPKFSDVTEVIKGWALSLN 93
Query: 69 IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFY 128
+++VM N YE D+ + + L F ++ D+ + +LNK G+ + +F+ +
Sbjct: 94 VESVMANIHYEVNEQALDREVSEVLANSEVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPF 153
Query: 129 QKKWIEKVKS---NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
++ W+ K + +K Q+ K L V + + H D+ F SS
Sbjct: 154 KRAWLLKFQMPMVSKPQPQAELSKEVLQ-AVEADRYHA----------DVPFSYPRESSE 202
Query: 186 GIKTGASGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ L F ++ + Y R+ P+++GTS LS +L G +S R+ + ++
Sbjct: 203 RWHASTTDIVQQLREFARERSDAYQAERDLPAVDGTSQLSPYLAIGALSPRQCIARLYA- 261
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNF 303
+ G TWLS++IWR+FYQ +L P +V K F + I W +Y ++ F
Sbjct: 262 -ENPLPDLTEGKATWLSEIIWREFYQHLLVFEPKLVRGKGFIPWEEKIQW---SYDEQAF 317
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
W G TGYP++D+A+ QLN +G+MHNRLRMV ASFL K++ I+W+WGE YF +KL D
Sbjct: 318 ERWKTGTTGYPIVDAAMRQLNMTGWMHNRLRMVVASFLTKDLHIDWRWGEAYFMSKLVDG 377
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
D A+NNG WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ ++ NK+IH+P
Sbjct: 378 DFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGTFVRHWVPEIKEVPNKFIHNP 437
Query: 424 WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
W S + L +Y KP+++H + ++ L+ +
Sbjct: 438 WLWSGFNL--------LDYHKPMVDHKVEREITLRLF 466
>gi|422648203|ref|ZP_16711327.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330961741|gb|EGH62001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 481
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 249/448 (55%), Gaps = 28/448 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEAALGKLNVPLLIRQADTWDKAPEVLSTLCQQFKVEGLYLNEEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD ++K L+ G + SY DQ++F+ IL KTG + +F+ ++K V +
Sbjct: 105 NETRRDLAVQKMLEEAGVQVNSYLDQLLFKPGSILTKTGNYFQVFTQFKK-----VCYTR 159
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLN 199
+ ++PV+ + +++ I ++ + GF + + + G AK ++
Sbjct: 160 LHEATHPVR------MPAAQQALSITSDPVPDQVKGFATPSQTLRALWPAGEGEAKRRMD 213
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F ++I Y R++P+ GTS LS +L G IS R+ + ++T +G T
Sbjct: 214 AFADEQISYYKDERDFPAKPGTSQLSAYLAAGVISPRQCLHAALSSNHGEFETGDVGTVT 273
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++L+WR+FY+ L YP V +++F+ E + + W A L W + TG P+ID
Sbjct: 274 WINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APDELLAWQEARTGLPIID 330
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG WQWS+S
Sbjct: 331 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGWQWSSS 390
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P SS G+
Sbjct: 391 TGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELANLNKKQIHDP---SSM----GGLF 443
Query: 438 LGKNYPKPILEHSLSKKNILKRYNFIKN 465
+YPKPI++ S S+ L + +
Sbjct: 444 GVADYPKPIVDLSKSRARALAAFKALPT 471
>gi|254828345|ref|ZP_05233032.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N3-165]
gi|258600738|gb|EEW14063.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N3-165]
Length = 467
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 223/397 (56%), Gaps = 24/397 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ K + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAERDEAAKTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K P K L K I N+ + F + + +
Sbjct: 148 KKWREEIKET-------PFKVTL-------KADNIRKENLFPKYEEQFAEMTCDLPILDS 193
Query: 190 GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L NFIK + +Y+ R++P ++ TS+LS +LR G IS+R I++ ++++
Sbjct: 194 GEKTANTRLANFIKHDVADYDKARDFPELDKTSHLSRYLRTGEISVR----TIWQALQEN 249
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ F +L WRDFY MI +PN N+ ++ Y I WE++ ++ F W +
Sbjct: 250 EATEGRAIFE--KELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKAWQE 304
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRMVTASFL K++ I+W++GE YF L D+D ASN
Sbjct: 305 GKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLLIDWRFGEKYFQQMLIDYDPASN 364
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP IQS+KFD G FIRKY+ +L+ L +KYIH P K S
Sbjct: 365 IGGWQWAASTGTDAVPYFRIFNPTIQSQKFDPTGKFIRKYVKELANLPDKYIHQPEKMSE 424
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ G++LGK+YP PI++H +K + RY F K
Sbjct: 425 TEQKEYGLLLGKDYPFPIVDHKERRKLAIARYEFSKE 461
>gi|443320341|ref|ZP_21049448.1| deoxyribodipyrimidine photolyase [Gloeocapsa sp. PCC 73106]
gi|442789946|gb|ELR99572.1| deoxyribodipyrimidine photolyase [Gloeocapsa sp. PCC 73106]
Length = 478
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 252/465 (54%), Gaps = 21/465 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V F FD ++L S I RI ++ + L Q +L++ ++ I +
Sbjct: 31 VIGCFCFDLDLL----SGDDIAPARISYLIGCLQLLQAQYQERGGELLLLRGKPTEIIPR 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L I+L V N D EP A RD+L+++EL+ + DQ++ ++L K+G PY
Sbjct: 87 LGIQLQARGVYWNLDVEPYAKERDRLVQRELEQQKIVVKTVWDQLLQSPGQVLTKSGDPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++ + K W + KS+ + K N L + + +++ + S +LG+ +
Sbjct: 147 QVYTPFWKNWSQHTKSSPVAPPALLHKITENEL---TLVQELVLPQLPSSQELGYSYWDY 203
Query: 183 SSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
L +K G AK L++F I+ Y RN+P+I GTS LS L+ G I IR + +
Sbjct: 204 P-LPLKPGEIAAKQRLSDFCSTAIEAYQEQRNFPAIEGTSQLSGALKLGAIGIRTVWQET 262
Query: 242 FKFIKKHYKTDCI-GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + + G TW +L WR+FYQ LY +P++ +++ + + W+++
Sbjct: 263 MEIQLHSCSIEGLQGIQTWQQELCWREFYQHALYFFPDLATGPYRESFKDFPWQNN---P 319
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF L
Sbjct: 320 SHFQAWCEGNTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLLINWQWGEKYFMQNL 379
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D DL++NNG WQWSASSG +P RIFNP Q++KFD + +IR++LP+LS + +
Sbjct: 380 YDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPEAEYIRQWLPELSSVDTIDL 438
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ K + + + G YP+PI+ H ++ + Y+ KN
Sbjct: 439 VTG-KITPWDCHQLG------YPQPIVNHQQQQREFKRLYSNSKN 476
>gi|440744576|ref|ZP_20923879.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP39023]
gi|440373994|gb|ELQ10737.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP39023]
Length = 482
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 248/452 (54%), Gaps = 39/452 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + KL + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K ++ G F SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQ-----SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGA 194
CY + +PV++ S I ++ I GF + + G + A
Sbjct: 156 CYTRLHEAMPHPVRTPKAQSAQS------IKSDPIPDQVKGFATPAKALRDLWPAGEAEA 209
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
+ ++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T
Sbjct: 210 RRRMDAFADEQISYYKDERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGN 269
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+G TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG
Sbjct: 270 VGTVTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELRAWQEARTG 326
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
P+ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG W
Sbjct: 327 LPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGW 386
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QWS+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P
Sbjct: 387 QWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP--------S 438
Query: 433 KAGIILG-KNYPKPILEHSLSKKNILKRYNFI 463
G + G +YPKPI++ S S+ L + +
Sbjct: 439 LIGDLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|333893079|ref|YP_004466954.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2]
gi|332993097|gb|AEF03152.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2]
Length = 474
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 157/416 (37%), Positives = 235/416 (56%), Gaps = 27/416 (6%)
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
I L+ + N YEP I RDK IKK+L + S +++E ++L K G
Sbjct: 74 IPALMEAYEAKGIYWNRCYEPWQINRDKAIKKQLLDNDYEAHSSNGSLLWEPMKVLKKDG 133
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVK-SYLNNLVHSSKLHKIINNNIISLNDLGFC 178
PY +F+ Y +K V+ + Y Q+ P + +Y + V SK+ K N+ +++DL
Sbjct: 134 TPYRVFTPYYRKGCLNVEPPR-YPQAPPARITYAD--VDDSKITKA--NHSCNIDDLNL- 187
Query: 179 KSNLSSLGI--------KTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRF 229
L SLG K G GA L FI+ + Y R+ PS+NGTS+LS HL F
Sbjct: 188 ---LPSLGWDSDFKNHWKPGEDGAADNLQYFIQHAARKYKDARDIPSMNGTSHLSPHLHF 244
Query: 230 GTISIRKLVKLIFKFIKKHYKT-DCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEY 288
G +S + ++ IK ++T + T+LS+L WR+F +LY +P + K+F ++
Sbjct: 245 GEVSPNQ----VWYAIKDRFETSEDKSIDTYLSELGWREFSYYLLYHFPTIPTKNFNDKF 300
Query: 289 DNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGIN 348
D W SD K+ W G TG P++D+ + +L +GYMHNR+RM+ SFL+KN+ I+
Sbjct: 301 DKFNWRSD---AKSLKAWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNLLIS 357
Query: 349 WKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKY 408
W+ GE +F + L D DLASN WQW A +G + P+FRIFNP++Q +KFD QG ++RKY
Sbjct: 358 WQEGERWFWDCLVDADLASNTAGWQWVAGTGADAAPYFRIFNPLLQGEKFDKQGKYVRKY 417
Query: 409 LPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
P+L+ L +KYIH PW A + AG+ LG YPKPI++ S++ L + +K
Sbjct: 418 CPELADLPDKYIHKPWDAPPVIAKDAGVHLGDTYPKPIVDLKASRQRALDAFQALK 473
>gi|424070820|ref|ZP_17808252.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|407999903|gb|EKG40273.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
Length = 482
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 248/452 (54%), Gaps = 39/452 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + KL + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKVLGALNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHVNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ + K ++ G F SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVHKTMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQ-----SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGA 194
CY + +PV++ S I ++ + GF + + + G + A
Sbjct: 156 CYTRLHEAMPHPVRTPKAQPAQS------IKSDAVPDQVKGFATPSKALRDLWPAGEAEA 209
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
+ ++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T
Sbjct: 210 RRRMDAFADEQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGD 269
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+G TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG
Sbjct: 270 VGTVTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELRAWQEARTG 326
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
P+ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG W
Sbjct: 327 LPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGW 386
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QWS+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ ++ K IH P
Sbjct: 387 QWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP--------S 438
Query: 433 KAGIILG-KNYPKPILEHSLSKKNILKRYNFI 463
G + G +YPKPI++ S S+ L + +
Sbjct: 439 LIGDLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|66044214|ref|YP_234055.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
B728a]
gi|63254921|gb|AAY36017.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas syringae pv.
syringae B728a]
Length = 482
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 247/452 (54%), Gaps = 39/452 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K + G F SY DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQKAMGKAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQ-----SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGA 194
CY + +PV++ S I ++ + GF + + + G + A
Sbjct: 156 CYTRLHEAMPHPVRTPQAQAAQS------IKSDAVPKQVKGFATPSKALRDLWPAGEAEA 209
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
+ ++ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T
Sbjct: 210 RRRMDAFAAEQISYYKTERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGD 269
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+G TW+++L+WR+FY+ L YP V +++F+ E + + W A + W + TG
Sbjct: 270 VGTVTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELRAWQEARTG 326
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
P+ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG W
Sbjct: 327 LPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGW 386
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QWS+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ ++ K IH P
Sbjct: 387 QWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP--------S 438
Query: 433 KAGIILG-KNYPKPILEHSLSKKNILKRYNFI 463
G + G +YPKPI++ S S+ L + +
Sbjct: 439 LIGDLFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|417097726|ref|ZP_11959367.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
Length = 482
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 142/437 (32%), Positives = 243/437 (55%), Gaps = 15/437 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L+ L + A + ++ L+ + + DAV N Y+P I D I
Sbjct: 58 WLHHSLEALDGSLRKRRGGLSLASGEALEVLRSLIKQSDADAVFWNRRYDPPGISIDARI 117
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
+ EL+ + S+ Q++ E ++++ +G PY +++ + + +++ + P K
Sbjct: 118 EHELEKRAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALESSIEAEPLDI---PSK 174
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNY 208
L + + S+ K+ + ++S SN + L G GA+ L FI+ ++ Y
Sbjct: 175 LQLASKLPGSE--KLESWKLLSTQP--DWASNFADL-CTPGEEGAQEKLRTFIEDRLDGY 229
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDF 268
NR+YP+ TS LS HL G IS ++ + + KH I +F ++ WR+F
Sbjct: 230 KENRDYPAKPATSMLSPHLALGEISPARIWDAT-RGLSKHVPAADIVHFR--KEIAWREF 286
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGY 328
+L +P + ++ +D W A+K+F W +G TGYP++D+ + QL G+
Sbjct: 287 SYHLLAHFPRLATANWDDRFDGFEW---RRAEKDFKAWSRGMTGYPIVDAGMRQLWRYGW 343
Query: 329 MHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRI 388
MHNR+RM+ ASFLIK++ ++W+ GE +F + L D D A+N +WQW A SG + PFFRI
Sbjct: 344 MHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRI 403
Query: 389 FNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
FNP++Q +KFD G F+R ++P+L KL KYIH P++A L+ A +ILG+ YP+P+++
Sbjct: 404 FNPVLQGEKFDPDGDFVRAHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVD 463
Query: 449 HSLSKKNILKRYNFIKN 465
H+ ++K L YN I+
Sbjct: 464 HAGARKRALAAYNAIRG 480
>gi|422415100|ref|ZP_16492057.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
gi|313624820|gb|EFR94752.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
Length = 467
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 157/436 (36%), Positives = 238/436 (54%), Gaps = 26/436 (5%)
Query: 32 FKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNI-DAVMINHDYEPQAIIRDKLIK 90
F S+ L N ++ L I + + +K+L K+ D V N D RD+ +
Sbjct: 50 FASVAHFQQEL-NKNTHLQIMFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAAQ 108
Query: 91 KELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKS 150
SY D + E+ + Y IF+ Y KKW E++K P+K
Sbjct: 109 AFFADNEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKE-------MPLKV 161
Query: 151 YLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYN 209
L K I ++ + F + +G A L NF+K+ + +Y+
Sbjct: 162 TL-------KPENIRKESLFPKYEEQFRELIQDLPAFDSGEKAANTRLANFVKEDLASYD 214
Query: 210 INRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFY 269
R+ P+++ TS+LS +LR G ISIR +++ ++K T+ G T+ +L WRDFY
Sbjct: 215 KARDVPALDKTSHLSRYLRTGEISIR----TVWQALQKEEATE--GRATFEKELCWRDFY 268
Query: 270 QMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYM 329
MI +P N+ ++ Y I WE++ ++ F W +G TG+PL+D+A+ QL +G+M
Sbjct: 269 NMIYVSFPKQKNEPIQENYRFIEWENN---REFFKKWQEGQTGFPLVDAAMRQLKETGWM 325
Query: 330 HNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIF 389
HNRLRM+TASFL K++ I+W++GE YF L D+D ASN G WQW+AS+G + P+FRIF
Sbjct: 326 HNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIF 385
Query: 390 NPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
NP QS+KFD G FIRKY+ +L L +K+IH P K S + ++ G+ILGK+YP PI++H
Sbjct: 386 NPTTQSEKFDPDGTFIRKYVKELRDLPDKFIHQPEKMSETEQQEHGLILGKDYPLPIIDH 445
Query: 450 SLSKKNILKRYNFIKN 465
+K + RY F K
Sbjct: 446 KERRKLAIARYEFSKE 461
>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354553774|ref|ZP_08973080.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353554491|gb|EHC23881.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
Length = 476
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 155/468 (33%), Positives = 258/468 (55%), Gaps = 33/468 (7%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
+F D NIL + I R+ ++ + L + Q L+I +K I ++
Sbjct: 34 LFCLDPNIL----QRDDIAPARVNYMLGCLRNLQESYQKLGGQLLIFQGQPTKIIPEVAK 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG-KPYSI 124
L ++ V+ N+D EP + RDK +K+ L+ G +Y DQ++ EIL K+ PY +
Sbjct: 90 SLKVNCVIWNNDVEPYSKERDKQVKEALQEKGITSETYWDQLLHAPGEILTKSNNDPYKV 149
Query: 125 FSFYQKKWIEKVKSNKCYLQSYPVKSYLNNL--VHSSKLHKIINNNIISL---NDLGFCK 179
++ + + W+++ K+N + + L + +++ + N +I L DLG+
Sbjct: 150 YTPFWRSWVKEDKAN--------IAESIEKLDSLSDEEINTVKNIGLIDLPTAKDLGYGW 201
Query: 180 SNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
L ++ G + AK L+ F I +Y RN+P+I+GTS LS +FG I IR++
Sbjct: 202 D--IPLLLELGETAAKEQLHYFCNSTIYSYQEQRNFPAIDGTSKLSPAFKFGVIGIREVW 259
Query: 239 KLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + + + TW ++ WR+FYQ LY +P + +++E+ + W+++
Sbjct: 260 QTTIEAYENTRSDEARENIQTWQQEIAWREFYQHCLYFFPELAEGPYREEFQDFPWDNN- 318
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ +F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 319 --EDHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLMINWQWGEKYFM 376
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D DL++NNG WQWSASSG +P RIFNP Q++K+D G +IR ++P++S L
Sbjct: 377 QKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDPDGEYIRLWVPEISSLDT 435
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+Y+ + K + G YP+PI++H ++ +RY IKN
Sbjct: 436 EYLVTG-KIPPLEAHSCG------YPQPIVDHKHQQREFKERYKQIKN 476
>gi|407700132|ref|YP_006824919.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Black Sea 11']
gi|407249279|gb|AFT78464.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Black Sea 11']
Length = 474
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 152/410 (37%), Positives = 236/410 (57%), Gaps = 16/410 (3%)
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
K I KL+ + + N YEP I RDK IKK L + S+ +++E ++L K
Sbjct: 79 KLIPKLMASFDAKGIFWNRCYEPWQINRDKGIKKTLIDSDYEAHSFNGSLLWEPMKVLKK 138
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
G PY +F+ Y KK +++ + Y ++ P + ++ + +++ SL L
Sbjct: 139 DGTPYRVFTPYYKKGCLQIEEPR-YPKAPPARITYADVSNEG-------DDLASLRLLPT 190
Query: 178 CKSNLS-SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
K + + + G GA L +FI+ + Y R+ PS GTS LS HL FG +S
Sbjct: 191 IKWDETIAKTWAPGEDGAADNLADFIQNSARKYKDGRDIPSAKGTSRLSPHLHFGEVSPN 250
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
++ + K ++ T+LS+L WR+F +L+ +P + NK+F ++D W +
Sbjct: 251 QV---WYAIKDKFGNSEDKSIETYLSELGWREFSYYLLFHFPTLPNKNFNDKFDKFPWRT 307
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
D A K W G TG P++D+ + +L +GYMHNR+RM+ SFL+KN+ ++W GE +
Sbjct: 308 DAKALKA---WQTGRTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNLLLSWHEGERW 364
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F + L D DLASN+ +WQW A SG + P+FRIFNPI+Q +KFD +G ++RKY P+L+KL
Sbjct: 365 FWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDSKGKYVRKYCPELNKL 424
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
S+KYIH PW+A + L++AGI LGK YPKPI++ S++ L + IK
Sbjct: 425 SDKYIHKPWEAPNAILKEAGIELGKEYPKPIVDLKASRQRALDAFQQIKE 474
>gi|312958863|ref|ZP_07773382.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6]
gi|311286633|gb|EFQ65195.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6]
Length = 480
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 252/449 (56%), Gaps = 33/449 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
+++F +++ LS+ L + L+IR A +++ +V +L ++ +V +N +Y
Sbjct: 47 KVDFWLRNLQRLSLALGELNIPLLIRSAATWQQVPAVVSELCRELSVKSVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + ++L+ G F Y DQ++F+ +L KTG + +FS ++K CY
Sbjct: 107 NRRDAAVAQQLEACGVTFHRYLDQLLFQPGSVLTKTGTYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHK--IINNNIISLNDLGF-CKSNLSSLGIKTGASGAKILLN 199
+ + S L +V + K + N++ + GF S+ G A+ L+
Sbjct: 158 SR---LHSALPRIVATPKAQQKLAFNSDPVPQTVDGFEPPSDCLRALWPAGEDEARRRLD 214
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F ++I Y R++P+ GTS LS +L G +S R+ + + + +++ IG T
Sbjct: 215 AFAEQQISYYKDERDFPAKPGTSQLSAYLAAGVVSPRQCLHAALQSNQGEFESGDIGTIT 274
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++L+WR+FY+ IL YP V +++F+ E + + W +A K+ W + TG P+ID
Sbjct: 275 WINELLWREFYKHILVGYPRVSRHRAFRPETEAVAW---RHAPKDLAAWQEARTGLPIID 331
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S
Sbjct: 332 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS 391
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIF+P+ QS+KFD G+FI+ +LP+L+ L+ K +H+P E G +
Sbjct: 392 TGTDSAPYFRIFSPLSQSEKFDSDGVFIKHWLPELAALNKKDVHNP--------EAVGGL 443
Query: 438 LG-KNYPKPILEHSLSKKNILKRYNFIKN 465
G +YP+ I++ S++ L + + +
Sbjct: 444 FGMADYPRAIVDLKKSRERALAAFRSLPS 472
>gi|254292413|ref|YP_003058436.1| deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
gi|254040944|gb|ACT57739.1| Deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
Length = 475
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 161/439 (36%), Positives = 248/439 (56%), Gaps = 25/439 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ +S+I L +L+ L++R A I KL L ID V N Y+P+ + D+ +
Sbjct: 49 WLHESLIRLQSDLEAIGVPLVLRRGDARDIIPKLTSDLKIDNVYWNRRYDPKDVAIDRAL 108
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNK-TGKPYSIFS-FYQKKWIEKVKSNKCYLQSYP 147
+ LK G S+K V+FE EI + G PY +FS F++ E V + QS
Sbjct: 109 MEHLKEEGVNVESFKANVLFEPWEIKSAGAGTPYKVFSPFWKAALKEGVPA-----QSLA 163
Query: 148 VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT---GASGAKILLNNFIK- 203
V + + + +L ++ +N+ DL N ++ G +GA F++
Sbjct: 164 VPTKIQS---KPQLDQLPFDNLEDW-DLMPASPNWTNGFWDVWVPGEAGAFERFKEFLEI 219
Query: 204 KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHY--KTDCIGYFTWLS 261
+K Y+ NR+ PS N TS LS HLRFG IS + I+ + H + D GY +L+
Sbjct: 220 NLKGYSQNRDVPSKNHTSCLSPHLRFGEISPLQ----IWHGVHAHSGGEVDKDGY-KFLA 274
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
++ WR+F IL+ N+ ++K ++D W D + W G TGYPL+D+ +
Sbjct: 275 EVGWREFSHSILFYADNLSQTNWKSDFDGFAWVQD---ENGLTAWQSGQTGYPLVDAGMR 331
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
+L +GY+HNR+RMV ASFLIK++ I+W+ GE +F + L D A+N +WQW A SG
Sbjct: 332 ELWQTGYIHNRVRMVVASFLIKHLRIDWREGEAWFWDTLVDACPANNPASWQWVAGSGAD 391
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ PFFRIFNPI+QS+KFD +G +IRK++P+L+ L NK IH+PW+A L++ G+ LG+N
Sbjct: 392 ASPFFRIFNPIMQSEKFDPKGSYIRKWVPELANLDNKSIHTPWEAPKLVLQEVGVRLGEN 451
Query: 442 YPKPILEHSLSKKNILKRY 460
YPKPI++H ++ L Y
Sbjct: 452 YPKPIVDHKTARDKALAAY 470
>gi|335425144|ref|ZP_08554132.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
gi|334886580|gb|EGM24937.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
Length = 483
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 236/442 (53%), Gaps = 21/442 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ S L+ S L+IR + + L+ + +V N Y+P I RDK +
Sbjct: 55 WLHDSLAAFSDALEALGSRLVIRRGDTTDVLDTLIAESGATSVYWNRLYDPLTIARDKKV 114
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K+ L + S+K ++ E + K G PY +F+ + W K N+
Sbjct: 115 KQHLADNDIETASFKAHLLHEPWTVETKQGGPYKVFTPF---W--KAIKNRAVDTPLAAP 169
Query: 150 SYLNNLVHSSKLHKIINNNIISLN---DLGFCKSNLSSLGIKTGASGAKILLNNFIKK-I 205
L + +I + ++ SL +G+ + + G GA L F+ +
Sbjct: 170 DALPEV-----WSRIGSESLASLELRPKIGWDRGIRETW--SPGEDGAHERLETFLADAL 222
Query: 206 KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHY--KTDCIGYFTWLSQL 263
K Y+ R+ P+ GTSYLS HL +G I R++V + +++ H KT ++LS++
Sbjct: 223 KTYDEARDEPARPGTSYLSPHLHWGEIGPRQIVHRVEEWLDDHREIKTLRTQADSFLSEI 282
Query: 264 IWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+F +LY +P ++ + + W D+ A K W +G TG P++D+ + +L
Sbjct: 283 GWREFAHHVLYHFPETPDEPLDARFKDFPWSGDDDALKR---WQQGQTGIPMVDAGMREL 339
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
++GYMHNRLRM ASFL KN+ + W+ GE +F L D DLA+N WQW+A G +
Sbjct: 340 WATGYMHNRLRMTVASFLTKNLRVAWQHGERWFWGTLVDADLANNTLGWQWAAGCGADAA 399
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYP 443
PFFRIFNP Q ++FD +G ++R+++P+L+ L N++IH PW A + L+ A I+LG +YP
Sbjct: 400 PFFRIFNPARQGERFDAKGEYVRRWVPELADLDNRHIHEPWNAPANALKAANIVLGDDYP 459
Query: 444 KPILEHSLSKKNILKRYNFIKN 465
+PI++ S++ L ++ IKN
Sbjct: 460 EPIVDLKASRREALAAFDEIKN 481
>gi|410861788|ref|YP_006977022.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
gi|410819050|gb|AFV85667.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
Length = 474
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 259/468 (55%), Gaps = 27/468 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSI-IELSINLQNYDSDLIIRYAIASKEI 60
++ ++IFD++ D R G + KS+ L+ +LQ + D I
Sbjct: 30 KIVPIYIFDESAPD-GRMPGGASKWWLHHSLKSLNKRLNGHLQIFKGD-------PQTLI 81
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
KL+ N ++ N YEP I RDK IKK L + S+ +++E ++L K G
Sbjct: 82 PKLMESFNASSIFWNRCYEPWQINRDKAIKKSLLDSDYEAHSFNGSLLWEPMKVLKKDGT 141
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVK-SYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
PY +F+ Y K +++ + Y ++ P + +Y + +S L + I +D K
Sbjct: 142 PYRVFTPYYKNGCLQIEEPR-YPKAPPARITYADVDDNSDGLAALALLPTIKWDDT-IAK 199
Query: 180 SNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
G GA L++FI+ + Y R+ PS GTS LS HL FG +S +
Sbjct: 200 E------WTPGEDGAADNLSDFIENSARRYKDGRDIPSAKGTSRLSPHLHFGEVSPNQ-- 251
Query: 239 KLIFKFIKKHYKT-DCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
++ IK + T + T+LS+L WR+F +L+ +P + NK+F ++D W +D
Sbjct: 252 --VWYAIKDRFGTSEDKSIETYLSELGWREFSYYLLFHFPTLPNKNFNDKFDKFPWRTDA 309
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A K W G TG P++D+ + +L +GYMHNR+RM+ SFL+KN+ ++W GE +F
Sbjct: 310 KALK---AWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNLLLSWHEGERWFW 366
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+ L D DLASN+ +WQW A SG + P+FRIFNPI+Q +KFD +G ++R+Y P+L+ LS+
Sbjct: 367 DTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGGYVRQYCPELNGLSD 426
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
KYIH PW+A S L++AG+ LGK+YPKPI++ S++ L + +K
Sbjct: 427 KYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAFQTLKE 474
>gi|386052851|ref|YP_005970409.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes Finland
1998]
gi|346645502|gb|AEO38127.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes Finland
1998]
Length = 467
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 151/397 (38%), Positives = 222/397 (55%), Gaps = 24/397 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ K + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAERDEAAKTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K P K L K I N+ + F + + +
Sbjct: 148 KKWREEIKET-------PFKVTL-------KADNIRKENLFPKYEEQFAEMTCDFPILDS 193
Query: 190 GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L NFIK I +Y+ R++P ++ TS+LS +LR G ISIR I++ +++
Sbjct: 194 GEKTANTRLANFIKHDIADYDKARDFPELDKTSHLSRYLRTGEISIR----TIWQALQET 249
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ G T+ +L WRDFY MI +PN N+ ++ Y I WE++ ++ F W
Sbjct: 250 EATE--GRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKAWQD 304
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRMVTASFL K++ I+W++GE YF L D+D ASN
Sbjct: 305 GKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLLIDWRFGEKYFQQMLIDYDSASN 364
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +KYIH P K S
Sbjct: 365 IGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIRKYVKELANLPDKYIHQPEKMSE 424
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ G++LGK+YP P+++H +K + RY F K
Sbjct: 425 TEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKE 461
>gi|424881257|ref|ZP_18304889.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392517620|gb|EIW42352.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 483
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 142/443 (32%), Positives = 238/443 (53%), Gaps = 26/443 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L+ + L++ A + + + + +AV N Y+P I D I
Sbjct: 58 WLHHSLEALDRSLRERQARLVLASGEALEVLCTFIRESGAEAVFWNRRYDPSGISIDAHI 117
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K EL+ + S+ Q++ E + ++ G PY +++ + + +E + L++ P K
Sbjct: 118 KHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRA-LEGGGEPEQPLEA-PAK 175
Query: 150 SYL------NNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK 203
+ + + S KL + + DL G GA L FI+
Sbjct: 176 LRIASQLPKSEALESWKLLPTKPDWAVHFTDL-----------WTPGEDGAHEKLRAFIE 224
Query: 204 -KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
+ Y NR+YP+ TS LS HL FG IS ++ K+ D + + +
Sbjct: 225 DALDGYKENRDYPARPATSLLSPHLAFGEISPARIWDATRGLSKRVAAADVVHF---RKE 281
Query: 263 LIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
+ WR+F +L+ +P + + ++ +D W +D+ +F WC+G TGYP++D+ + Q
Sbjct: 282 IAWREFSYHLLFHFPRLASNNWNDRFDGFEWRNDD---DDFKVWCRGMTGYPIVDAGMRQ 338
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
L G+MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D A+N +WQW A SG +
Sbjct: 339 LWRHGWMHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADTANNAASWQWVAGSGADA 398
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNY 442
PFFRIFNP++Q +KFD G ++R Y+P+L +L KYIH P++A L++AGI LG+ Y
Sbjct: 399 SPFFRIFNPVLQGEKFDPDGDYVRTYVPELRELGVKYIHRPFEAPKSMLDEAGITLGQTY 458
Query: 443 PKPILEHSLSKKNILKRYNFIKN 465
PKPI++H+ ++ L YN I++
Sbjct: 459 PKPIVDHASARNRALAAYNAIRD 481
>gi|398904477|ref|ZP_10652320.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM50]
gi|398175856|gb|EJM63596.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM50]
Length = 482
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 148/450 (32%), Positives = 251/450 (55%), Gaps = 28/450 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+++F +++ EL L + L+IR A E K+++ +L IDAV +N +Y
Sbjct: 47 KVDFWLRNLSELRHALGALNIPLLIRKASRWDEAPKVLLELCQQLKIDAVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + LK G F+ Y DQ++F+ +L +TG + +FS ++K E++ ++
Sbjct: 107 TRRDAAVAQALKAQGIDFYRYLDQLLFKPGTVLTRTGTYFQVFSQFRKVCYERLHASLPR 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L + P + ++ + S +L +L G + A+ L F
Sbjct: 167 LVTAPAIQAPLGIASDEPPSRVEGFDTPS--------DSLRAL-WPAGEAEARRRLETFT 217
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+I Y+ R++P+ GTS LS ++ G IS R+ + + + +++ +G TW++
Sbjct: 218 DAQIDYYHSERDFPAKPGTSQLSAYITAGVISPRQCLHAALQSNQGEFESGKVGAVTWIN 277
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+L+WR+FY+ IL YP V +++F+ E + + W A ++ W +G TG P+ID+A+
Sbjct: 278 ELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APEDLKAWQQGRTGLPIIDAAM 334
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 335 RQLLETGWMHNRLRMVVAMFLSKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGT 394
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
S P+FRIFNP+ QS+KFD +G+FI+ +LPQ++ ++ K +H+ + G+
Sbjct: 395 DSAPYFRIFNPLSQSEKFDAEGVFIKHWLPQINGMNKKDLHN-------RARLDGLFGVT 447
Query: 441 NYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP PI+ S S++ L + KN+ +R
Sbjct: 448 DYPSPIVNLSTSRERALAAF---KNLPSRQ 474
>gi|422408691|ref|ZP_16485652.1| deoxyribodipyrimidine photo-lyase, partial [Listeria monocytogenes
FSL F2-208]
gi|313610351|gb|EFR85579.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes FSL
F2-208]
Length = 467
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 223/397 (56%), Gaps = 24/397 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + S+ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAERDEAAQAFFDEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K P K L K I ++ + F + + +
Sbjct: 148 KKWREEIKET-------PFKVTL-------KPENIRKESLFPKYEEQFAEMTCDLPILDS 193
Query: 190 GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L NFIK I +Y+ R++P ++ TS+LS +LR G ISIR I++ +++
Sbjct: 194 GERAANTRLANFIKHDIADYDKARDFPELDKTSHLSRYLRTGEISIR----TIWQALQET 249
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ G T+ +L WRDFY MI +PN N+ ++ Y I WE++ ++ F W +
Sbjct: 250 EATE--GRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKAWQE 304
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE YF L D+D ASN
Sbjct: 305 GETGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASN 364
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +KYIH P K +
Sbjct: 365 IGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGEFIRKYVKELANLPDKYIHQPEKMTE 424
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ G++LGK+YP PI++H +K + RY F K
Sbjct: 425 TEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKE 461
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/473 (33%), Positives = 255/473 (53%), Gaps = 43/473 (9%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
+F D N+L+ + I R+ ++ + L + Q S L+I +K I K+
Sbjct: 34 LFCLDSNLLN----RDDIAPARVNYMLGCLQHLQKSYQKLGSQLLIFQGEPTKIIPKVAD 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG-KPYSI 124
LN+D V N+D EP + RDK +K+ L+ + +Y DQ++ EIL K+ PY +
Sbjct: 90 ALNVDCVFWNNDVEPYSKERDKQVKEALEEKSIQSKTYWDQLLHAPGEILTKSNNDPYKV 149
Query: 125 FSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHS-SKLHKIINNNIISLNDLGFCK---- 179
++ + + W+++ K++ +V S KL + + I ++ DLG
Sbjct: 150 YTPFWRSWVKEEKAD---------------IVESIEKLESLSDEEINTVKDLGLIDLPTA 194
Query: 180 -----SNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTIS 233
S + L ++ G + AK LN F I +Y RN P+I+ TS LS +FG I
Sbjct: 195 KDLGYSWDAPLLLEPGETAAKEQLNYFSDNAIYSYQEQRNLPAIDATSKLSPAFKFGIIG 254
Query: 234 IRKLVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNIL 292
IR++ + + + + TW ++ WR+FYQ LY +P + ++ E+
Sbjct: 255 IREVWQATVEAYENTRSDEARENIQTWQQEIAWREFYQHCLYFFPELAEGPYRDEFKEFP 314
Query: 293 WESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWG 352
W+++ +++F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ INW+WG
Sbjct: 315 WDNN---EQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWG 371
Query: 353 ENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQL 412
E YF KL D DL++NNG WQWSASSG +P RIFNP Q++K+D G +IR ++P++
Sbjct: 372 EKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDPDGEYIRLWVPEI 430
Query: 413 SKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
S L + + + K + G YP+PI++H ++ +RY IKN
Sbjct: 431 SSLDTECLVTG-KIPPLEAHSCG------YPQPIVDHKQQQREFKERYKRIKN 476
>gi|393761808|ref|ZP_10350443.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Alishewanella agri BL06]
gi|392607303|gb|EIW90179.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Alishewanella agri BL06]
Length = 480
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 152/461 (32%), Positives = 256/461 (55%), Gaps = 39/461 (8%)
Query: 9 FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLN 68
++ + + PLR Q ++ RR++ + + L+I L + YA I L + L
Sbjct: 47 WNAHQMAPLR-QDLLR-RRVQAMQTELAALNIPLLAVEGS---DYASCEPLIAAL-LPLG 100
Query: 69 IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFY 128
+ A+ +YE + RD+ + L G + I I + G+ Y +F+ +
Sbjct: 101 VKALYAQVEYELREQRRDQQVSILLAQQGVAAHWFDRLCIMPPGSIRTQQGEIYKVFTPF 160
Query: 129 QKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK 188
++ W++++ S+ +Q YP + H ++ L L ++ S G
Sbjct: 161 KRNWLQRLASDG--IQCYPKPALQPE-------HSLL------LPALPPMQAPDQSSG-H 204
Query: 189 TGASGAKIL--LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
S A+IL + NF + ++ Y R++P+I GTS LS +L G +S ++ V +
Sbjct: 205 WPVSEAEILTRMRNFCQQRVSAYQQERDFPAIAGTSQLSPYLAIGGVSAQQCVARLQLEA 264
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFL 304
+ + G WLS+LIWRDFY+ IL +P+++ +++F+ E D I W ++ + F
Sbjct: 265 NEAMWQEKSGAAVWLSELIWRDFYKHILVAFPHLIKHRAFQAETDLIRWPNE---QARFA 321
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
WC+G TGYP++D+A+ QLN +G+MHNRLRM+TASFL+K++ I+W+WGE YF +KL D D
Sbjct: 322 AWCRGETGYPIVDAAMRQLNQTGWMHNRLRMITASFLVKDLHIDWRWGEQYFMSKLLDGD 381
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
A+NNG WQW+AS+G + P+FRIFNP+ QS++FD G FIR+++P+LS + K +H P
Sbjct: 382 FAANNGGWQWAASTGTDAAPYFRIFNPVTQSERFDPNGDFIRQFVPELSAKTGKDLHWPH 441
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ K Y KPI++H+ ++K L + +K
Sbjct: 442 R----------LVTPKGYVKPIVDHNEARKQTLALFAAVKG 472
>gi|399002467|ref|ZP_10705153.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM18]
gi|398124907|gb|EJM14403.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM18]
Length = 480
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/450 (33%), Positives = 251/450 (55%), Gaps = 28/450 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+++F +++ EL L + L+IR A E K+++ +L IDAV +N +Y
Sbjct: 47 KVDFWLRNLGELRRALDALNIPLLIRQASRWDEAPKVLLELCQQLKIDAVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + LK G F S+ D ++F+ +L +TG + +FS ++K E++ ++
Sbjct: 107 THRDAAVAQALKARGIDFHSHLDHLLFKPGTVLTRTGTYFQVFSQFRKVCYERLHASLPG 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L + P + LH + + +L +L G + A+ L+ F+
Sbjct: 167 LVAAPALQ--------APLHISSDEPPSRVEGFDSPHDSLRAL-WPAGETEARRRLDAFV 217
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+I Y+ R++P+ GTS LS +L G IS R+ + + + +++ +G TW++
Sbjct: 218 DARIDYYHSERDFPAKPGTSQLSAYLAAGVISPRQCLHAALRSNQGEFESGKVGAVTWIN 277
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+L+WR+FY+ IL YP V +++F+ E + + W A + W +G TG P+ID+A+
Sbjct: 278 ELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APEELKAWQQGRTGLPIIDAAM 334
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 335 RQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGT 394
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
S P+FRIFNP+ QS+KFD +G+FI+ +LPQ++ ++ K +H+P G+ +
Sbjct: 395 DSAPWFRIFNPLRQSEKFDAEGVFIKHWLPQINTMNKKNLHNPASLD-------GLFGVR 447
Query: 441 NYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP I+ S S++ L + KN+ +R
Sbjct: 448 DYPSLIVNLSTSRERALAAF---KNLPSRQ 474
>gi|213967212|ref|ZP_03395361.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
T1]
gi|301381052|ref|ZP_07229470.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
Max13]
gi|302062191|ref|ZP_07253732.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
K40]
gi|213928054|gb|EEB61600.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
T1]
Length = 482
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 247/450 (54%), Gaps = 31/450 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L +L ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ +++ ++ G F S+ DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQQSMQADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSNLSSLGI-KTGASGAKIL 197
CY + + + VH+ + + I ++ I GF + + + G A
Sbjct: 156 CYTR---LHQAMPRTVHTPEAQQPLSIKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 IEAFAGEQISYYKDERDFPARPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP-------ASVGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGVADYPKPIVDLSKSRARALAAFKALPT 472
>gi|395500669|ref|ZP_10432248.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. PAMC 25886]
Length = 481
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 252/445 (56%), Gaps = 35/445 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ LS+ L + L+IR+A A + + L +L++++V +N +Y
Sbjct: 47 KVDFWLRNLQSLSVALGELNIPLLIRHASTWDQAPQALADLCQELSVESVHVNDEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + L+ G F +Y DQ++F+ +L KTG + +FS ++K CY
Sbjct: 107 ERRDAAVATALEAQGVTFHNYLDQLLFQPGSVLTKTGTYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLH---KIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILL 198
+ + L L+ + K K+ ++ I D GF + + + G + A+ L
Sbjct: 158 NR---LHGALPRLIAAPKAQAPLKLKSDPIPDQVD-GFATPSEALRALWPAGETEARRRL 213
Query: 199 NNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
+ F +I Y R++P+ GTS LS +L G +S R+ + + + +++ IG
Sbjct: 214 DQFADAQISYYKDERDFPAKPGTSQLSAYLAAGVVSPRQCLHAALQSNQGEFESGDIGAI 273
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TW+++L+WR+FY+ IL YP V +++F+ E + + W + + ++ W + TG P+I
Sbjct: 274 TWINELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRN---SPEDLKAWQEARTGLPII 330
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+
Sbjct: 331 DAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSS 390
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G S P+FRIF+P+ QS+KFD +G+FI+ +LPQL+ L+ K +H+P + G
Sbjct: 391 STGTDSAPYFRIFSPLSQSEKFDGEGVFIKHWLPQLAALNKKEVHNP--------DAVGG 442
Query: 437 ILG-KNYPKPILEHSLSKKNILKRY 460
+ G +YP+PI++ S+ L +
Sbjct: 443 LFGVADYPRPIVDLKKSRDRALAAF 467
>gi|383936686|ref|ZP_09990108.1| deoxyribodipyrimidine photo-lyase [Rheinheimera nanhaiensis E407-8]
gi|383702233|dbj|GAB60199.1| deoxyribodipyrimidine photo-lyase [Rheinheimera nanhaiensis E407-8]
Length = 472
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/442 (33%), Positives = 232/442 (52%), Gaps = 34/442 (7%)
Query: 29 EFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNID---AVMINHDYEPQAIIR 85
+FI + + L L + L+ + +++ L +L+ V +YE + R
Sbjct: 57 DFIRRRVQALRTELTALNIPLLAVEGSSYQQVPALFGQLSQVFQVTVFAQTEYELREQQR 116
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
D + + L + Q I I + G Y +F+ +++ W+ ++
Sbjct: 117 DAKVAQRLSANKGVLVQFDTQCIMPPGSIRTQQGDIYKVFTPFKRSWLARLHQQGVQCFG 176
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK-SNLSSLGIKTGASGAKILLNNFIK- 203
P K +N + L + + + SS L F +
Sbjct: 177 RP---------------KRVNQPPLQLPEHSVMQPGDDSSANWPVTEELMLTRLRTFCQQ 221
Query: 204 KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
++ +Y R++P+++GTS LS +L G IS + V + K+ + + G WLS+L
Sbjct: 222 RVADYQQQRDFPAVDGTSKLSPYLAIGAISAMQCVARLQLEAKESWAREKSGAEVWLSEL 281
Query: 264 IWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
IWR+FY+ IL YP ++ ++ F+ + I W +D K F WC G TGYP++D+A+ Q
Sbjct: 282 IWREFYKHILVAYPQLIKHQPFQADTAAIRWTND---KTLFQAWCDGQTGYPIVDAAMRQ 338
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
LN +G+MHNRLRM+ ASFL+K++ I+W+WGE YF +KL D D A+NNG WQW+AS+G +
Sbjct: 339 LNQTGWMHNRLRMIVASFLVKDLHIDWRWGERYFMSKLIDGDFAANNGGWQWAASTGTDA 398
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNY 442
P+FRIFNP+ QS+KFD QG FIR Y+P+LSKL +H P KA K Y
Sbjct: 399 APYFRIFNPVSQSEKFDPQGDFIRLYVPELSKLQGAALHWPAKAGGV----------KAY 448
Query: 443 PKPILEHSLSKKNILKRYNFIK 464
PKPI++HS+++K+ L + +K
Sbjct: 449 PKPIVDHSIARKHTLALFAEVK 470
>gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 474
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 258/468 (55%), Gaps = 27/468 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSI-IELSINLQNYDSDLIIRYAIASKEI 60
++ ++IFD++ D R G + KS+ L+ +LQ + D I
Sbjct: 30 KIVPIYIFDESAPD-GRMPGGASKWWLHHSLKSLNKRLNGHLQIFKGD-------PQTLI 81
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
KL+ N ++ N YEP I RDK IKK L + S+ ++E ++L K G
Sbjct: 82 PKLMESFNASSIFWNRCYEPWQINRDKAIKKSLLGSDYEAHSFNGSSLWEPMKVLKKDGT 141
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVK-SYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
PY +F+ Y K +++ + Y ++ P + +Y + +S L + I +D K
Sbjct: 142 PYRVFTPYYKNGCLQIEEPR-YPKAPPARITYADVDDNSDGLAALALLPTIKWDDT-IAK 199
Query: 180 SNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
G GA L++FI+ + Y R+ PS GTS LS HL FG +S +
Sbjct: 200 E------WTPGEDGAADNLSDFIENSARRYKDGRDIPSAKGTSRLSPHLHFGEVSPNQ-- 251
Query: 239 KLIFKFIKKHYKT-DCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
++ IK + T + T+LS+L WR+F +L+ +P + NK+F ++D W +D
Sbjct: 252 --VWYAIKDRFGTSEDKSIETYLSELGWREFSYYLLFHFPTLPNKNFNDKFDKFPWRTDA 309
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A K W G TG P++D+ + +L +GYMHNR+RM+ SFL+KN+ ++W GE +F
Sbjct: 310 KALK---AWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNLLLSWHEGERWFW 366
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+ L D DLASN+ +WQW A SG + P+FRIFNPI+Q +KFD +G ++R+Y P+L+ LS+
Sbjct: 367 DTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGGYVRQYCPELNGLSD 426
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
KYIH PW+A S L++AG+ LGK+YPKPI++ S++ L + +K
Sbjct: 427 KYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAFQTLKE 474
>gi|407781615|ref|ZP_11128833.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
gi|407207832|gb|EKE77763.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
Length = 497
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 140/436 (32%), Positives = 237/436 (54%), Gaps = 13/436 (2%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ LS +L+ + LI+R + + I LV + AV N YEP A RD+ I
Sbjct: 71 WLHHSLTALSHDLKALGAPLILRRGDSREVIDSLVREAGATAVYWNRCYEPFARKRDEAI 130
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K LK G + S+ ++ E + NK+G+P+ ++S + + + K K +K P+
Sbjct: 131 KATLKQDGIEARSFNSALLHEPWTVENKSGEPFRVYSAFWRACLAKGKPDK------PLP 184
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKN-Y 208
+ + S+ I + + + K S+ G +GA+ L F+ + N Y
Sbjct: 185 APETLVAASAPASDSIGDWKLLPTKPNWAKRFESAW--TPGENGAQERLTGFLDEAVNRY 242
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDF 268
R+ P I TS LS HL FG I R++ + H + +LS++ WR+F
Sbjct: 243 KAERDRPDIEATSRLSPHLHFGEIGPRQIWHATRAAMAAHDLNEASAE-KFLSEVGWREF 301
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGY 328
+LY + + E+ + W ++ K W +G TGYP++D+ + +L ++G+
Sbjct: 302 SHHLLYHNDALPEHPLRPEFADFPWHEND---KALTAWQRGLTGYPIVDAGMRELWATGW 358
Query: 329 MHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRI 388
MHNR+RM+ ASFL+K++ I W+ GE +F + L D DLA+N +WQW A G + P+FRI
Sbjct: 359 MHNRVRMIVASFLVKDLLIPWQEGEAWFWDTLVDADLANNAASWQWVAGCGADAAPYFRI 418
Query: 389 FNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
FNP++Q +KFD +G ++R+++P+L+K+ +IH PW A + +AG+ LGK+YP PI++
Sbjct: 419 FNPVLQGEKFDPEGAYVRRWVPELAKMPASHIHKPWLAPDDVMRQAGVTLGKSYPNPIVD 478
Query: 449 HSLSKKNILKRYNFIK 464
H ++ L ++ IK
Sbjct: 479 HGTARDRALDAFSRIK 494
>gi|420257700|ref|ZP_14760452.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404514777|gb|EKA28560.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 481
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 224/401 (55%), Gaps = 26/401 (6%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKEL--KVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
+DA+ NH YE +RD+ + +L + I C F D V+ +L + Y +F
Sbjct: 96 QVDALFYNHQYELNERMRDEALMTKLSHRAIACHGF--HDSVLLPPGSVLTGNNEMYKVF 153
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ +++ +I+++ + C P ++ S L + + + S
Sbjct: 154 TPFRRAFIQRLMMSDCRSVPAPKARTTAAVIPSQPLAP-----------FDYPQQPVDSQ 202
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
G A L +F ++ +++Y R++P++ GTS LS +L G +S R+ V +
Sbjct: 203 LFPAGEEAALQRLRSFCREDVQDYQQQRDFPAVAGTSCLSPYLALGILSPRQCVNRLRAE 262
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNF 303
+ + G F WL++LIWR+FY+ +L YP + + F D +LW N++K+
Sbjct: 263 CPQVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQHHPFIGWTDAVLW---NHSKQQL 319
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
+ W +G TGYP++D+A+ QLN +G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D
Sbjct: 320 IAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLLDG 379
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
DLA+NNG WQW+AS+G + P+FRIFNP Q ++FD G+FIR++LP+L+ + + IH P
Sbjct: 380 DLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVFIRRWLPELAAVPDSDIHQP 439
Query: 424 WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
W+ + + + +YP P++EH ++ L + K
Sbjct: 440 WRWAERQQQSL------DYPPPLVEHKQARLATLAAFEAAK 474
>gi|237799740|ref|ZP_04588201.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022595|gb|EGI02652.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 482
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 246/448 (54%), Gaps = 31/448 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L +L ++ V +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGKLNVPLLIREADTWDKAPEVLSTLCKELKVEGVHLNQEYGV 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ +++ L+ G Y DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQQTLEKDGIHVTHYLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSN--LSSLGIKTGASGAKI 196
CY + + + LV + + + ++ I GF + L L A ++
Sbjct: 156 CYTR---LHEAMPRLVRTPPAQQPLSVKSDAIPEQVKGFATPSKALRDLWPAGEAEASRR 212
Query: 197 LLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ ++I Y +R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 MAAFADEQISYYKTDRDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L +P V +++F+ E + + W A L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGFPRVSRHRAFRPETEALKWRD---APDELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLASNNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K +H P SS G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQLHDP---SSI----GG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGAADYPKPIVDLSKSRARALAAFKAL 470
>gi|422808697|ref|ZP_16857108.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
gi|378752311|gb|EHY62896.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
Length = 467
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 223/397 (56%), Gaps = 24/397 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD++ + + S+ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAERDEVAQAFFDEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K P K L K I ++ + F + + +
Sbjct: 148 KKWREEIKET-------PFKVTL-------KTENIWKEDLFPKYEEQFAEMTCDLPILDS 193
Query: 190 GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L NFIK I +Y+ R++P ++ TS+LS +LR G ISIR I++ +++
Sbjct: 194 GERAANTRLANFIKHDIADYDKARDFPELDKTSHLSRYLRTGEISIR----TIWQALQET 249
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ G T+ +L WRDFY MI +PN N+ ++ Y I WE++ ++ F W +
Sbjct: 250 EATE--GRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKAWQE 304
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE YF L D+D ASN
Sbjct: 305 GETGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASN 364
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP Q++KFD G FIRKY+ +L+ L +KYIH P K S
Sbjct: 365 IGGWQWAASTGTDAVPYFRIFNPTTQAQKFDPTGKFIRKYVKELANLPDKYIHQPEKMSE 424
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
++ G+ILGK+YP P+++H +K + RY F K
Sbjct: 425 TVQKEHGLILGKDYPFPLVDHKERRKLAIARYEFSKE 461
>gi|395794837|ref|ZP_10474153.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. Ag1]
gi|395340998|gb|EJF72823.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. Ag1]
Length = 481
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 251/449 (55%), Gaps = 33/449 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ LS L + L+IR+A A + + L +L++++V +N +Y
Sbjct: 47 KVDFWLRNLQRLSSALGELNIPLLIRHADTWDQAPEVLAGLCQELSVESVHVNDEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + K L+ G F +Y DQ+ F+ +L KTG + +FS ++K CY
Sbjct: 107 ERRDAAVAKALEAQGITFHTYLDQLFFQPGSVLTKTGTYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLND--LGFCKSNLSSLGI-KTGASGAKILLN 199
+ + L LV + K + + D GF + + + G + A+ L+
Sbjct: 158 SR---LHGALPRLVATPKAQAQLKLKSDEVPDHVEGFATPSEALRALWPAGEAEARRRLD 214
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F +I Y R++P+ GTS LS +L G +S R+ + + + +++ IG T
Sbjct: 215 QFADAQISYYKDERDFPAKPGTSQLSAYLAAGVVSPRQCLHAALQSNQGEFESGDIGTIT 274
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++L+WR+FY+ IL YP V +++F+ E + + W + + ++ W + TG P+ID
Sbjct: 275 WINELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRN---SPEDLKAWQEARTGLPIID 331
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S
Sbjct: 332 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS 391
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIF+P+ QS+KFD +G+FI+ +LPQL+ L+ K +H+P + G +
Sbjct: 392 TGTDSAPYFRIFSPLSQSEKFDGEGVFIKHWLPQLAALNKKEVHNP--------DAVGGL 443
Query: 438 LG-KNYPKPILEHSLSKKNILKRYNFIKN 465
G +YP+PI++ S++ L + + +
Sbjct: 444 FGVADYPRPIVDLKKSRERALAAFRSLPS 472
>gi|123443172|ref|YP_001007146.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090133|emb|CAL12996.1| putative deoxyribodipyrimidine photolyase [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 481
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 224/401 (55%), Gaps = 26/401 (6%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKEL--KVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
+DA+ NH YE +RD+ + +L + I C F D V+ +L + Y +F
Sbjct: 96 QVDALFYNHQYELNERMRDEALMTKLSHRAIACHGF--HDSVLLPPGSVLTGNNEMYKVF 153
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ +++ +I+++ + C P ++ S L + + + S
Sbjct: 154 TPFRRAFIQRLMMSDCRSVPAPKTRTTAAVIPSQPLAP-----------FDYPQQPVDSQ 202
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
G A L +F ++ +++Y R++P++ GTS LS +L G +S R+ V +
Sbjct: 203 LFPAGEEAALQRLRSFCREDVQDYQQQRDFPAVAGTSCLSPYLALGILSPRQCVNRLRAE 262
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNF 303
+ + G F WL++LIWR+FY+ +L YP + + F D +LW N++K+
Sbjct: 263 CPQVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQHHPFIGWTDAVLW---NHSKQQL 319
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
+ W +G TGYP++D+A+ QLN +G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D
Sbjct: 320 IAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLLDG 379
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
DLA+NNG WQW+AS+G + P+FRIFNP Q ++FD G+FIR++LP+L+ + + IH P
Sbjct: 380 DLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVFIRRWLPELAAVPDSDIHQP 439
Query: 424 WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
W+ + + + +YP P++EH ++ L + K
Sbjct: 440 WRWAERQQQSL------DYPPPLVEHKQARLATLAAFEAAK 474
>gi|428314222|ref|YP_007125199.1| deoxyribodipyrimidine photolyase [Microcoleus sp. PCC 7113]
gi|428255834|gb|AFZ21793.1| deoxyribodipyrimidine photolyase [Microcoleus sp. PCC 7113]
Length = 478
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 156/468 (33%), Positives = 238/468 (50%), Gaps = 26/468 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D NIL+ + + R+ ++ + L S L+I + K +
Sbjct: 31 VVGVFCLDPNILE----RDDVAPARVSYMIGCLQSLQQGYTQAGSQLLILHDDPCKALPD 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L A+ N D EP + RD+L+ L G + + DQ++ EI +K+ +PY
Sbjct: 87 LAAALKAKAIFWNWDVEPYSKQRDRLVSDALTQKGIEVHHHWDQLLHAPEEIHSKSQEPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNII--SLNDLGFCKS 180
++++ + K W SN+ + L + I + DLGF
Sbjct: 147 TVYTPFWKNW-----SNQAKMAPVDTLHQAEGLTPEEQETAQQAGAIALPTAKDLGFVWD 201
Query: 181 NLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
N L + G A+ L F I Y RN+P+I GTS LS L+FG I IR +
Sbjct: 202 N--ELLTQPGEEAAQAKLAEFSTHAITEYEEQRNFPAIKGTSELSAALKFGAIGIRTVWA 259
Query: 240 LIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+K + W +L WR+FYQ LY +P + + ++ + + W+++
Sbjct: 260 ATIAALKNSRSDETQASIQAWQKELAWREFYQHALYHFPELADGPYRDTFKDFPWDNN-- 317
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ F WC+G TGYP++D+A+ QLN+ G+MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 318 -PQLFQAWCEGKTGYPIVDAAMRQLNTLGWMHNRCRMIVASFLTKDLLINWQWGEKYFLQ 376
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
KL D DL++NNG WQWSASSG +P RIFNP Q+KKFD +G +IR++LP+L + +
Sbjct: 377 KLYDADLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDPEGEYIREWLPELRSVDTE 435
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
Y+ S LE+ + NYP PI++H ++ +RY K +
Sbjct: 436 YLIS---GDIPPLERHAL----NYPAPIVDHKQQQRLFKERYQQQKAM 476
>gi|448677847|ref|ZP_21689037.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
gi|445773522|gb|EMA24555.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
Length = 465
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/466 (30%), Positives = 238/466 (51%), Gaps = 32/466 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FDK +LD R+ F+ ++ L ++ SDL+I + +
Sbjct: 27 VVPVFVFDKAVLDHAGPP------RVAFMLDALDSLREWYRDRGSDLVITEGDPTSVLPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + V DY A RD +++ L + ++ V+ E EI G PY
Sbjct: 81 LAAEYGTEKVTWGKDYSGLARERDAAVRQALDDEDVAREAVQNAVLHEPGEITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+++ +KW ++ K S + +L + + I +L DLGF +
Sbjct: 141 SVFTYFGRKWHDREKEAPYDPPS------------TDELADVDGDPIPTLADLGFEEPEA 188
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ G A+ LL++F+ + + Y R++P+ TS LS HL+FGTI IR++
Sbjct: 189 TVPA--AGTDDARALLDDFLDENVYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRT 246
Query: 242 --FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
K + + + F SQL WR+FY +L+ +P+VV ++K + I WE+D
Sbjct: 247 QDAKEGTGGDRRESVREFQ--SQLAWREFYTQVLFAHPHVVTSNYKSYENPIEWEND--- 301
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
++ W G TGYP++D+ + QL YMHNR+RM+ ASFL K++ I+W+ G +F K
Sbjct: 302 EELLQTWKDGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLIDWRHGYEWFREK 361
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D D A++NG WQW+AS+G +QP+FRIFNP+ Q + +D +I++Y+P+L + +
Sbjct: 362 LVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPDAEYIKEYVPELRDAAPEV 421
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH W S + YP P+++HS ++ L + +
Sbjct: 422 IHD-WNECSLTQRRNA---APEYPDPVVDHSERREQALAMFEQARG 463
>gi|297585056|ref|YP_003700836.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
gi|297143513|gb|ADI00271.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
Length = 474
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/461 (31%), Positives = 248/461 (53%), Gaps = 29/461 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ CVF ++ L + R ++ F+++ S +L++ + + Y ++
Sbjct: 36 ILCVFHIHDDLFSHLHT-------RHDYFFQTLRHFSDDLKSRNIAIRFLYGEVTEAFAS 88
Query: 63 LVIKLN-IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L+ + + + AV + DY A RD+ ++ + +F + E + I+ G P
Sbjct: 89 LLKEYSGVQAVFASKDYTSFATERDRTVRTLFEERNIRFTLTVSNHLQEPSSIMKDDGTP 148
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +++ Y K+W++K PV+ L H KL + ++ L ++
Sbjct: 149 YKVYTPYSKQWLKK-----------PVRGLLAG--HEKKLRERTCEVAMNRGKLDDFLAS 195
Query: 182 LSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
G A L F+ ++ +Y +R++P++ GTS LS +L+ G +S+ ++
Sbjct: 196 SDRTWQALGEDHAHERLEQFVTDRLTHYGESRDFPAVAGTSRLSPYLKTGVLSVAQVYHA 255
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ +K D T++ +L WRDFY MI Y + N+ N+ F+++Y + W D+
Sbjct: 256 AYPLFEK--GDDAA--VTFIKELAWRDFYTMIHYHFENLRNQEFQEKYRTLSWNEDD--- 308
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+ W +G TG+PLID+A+ QLN++G+MHNRLRM TASFL K+ I+W+ GE YFA KL
Sbjct: 309 ELLEYWKQGQTGFPLIDAAMRQLNTTGWMHNRLRMATASFLTKDYRIDWREGERYFAEKL 368
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D+D ASN G WQW+AS G + P+FR+FNP+ QSK+FD +G FIR+Y+P+L + I
Sbjct: 369 IDYDEASNTGGWQWAASVGTDAVPYFRVFNPVRQSKRFDPEGTFIRQYVPELKDVPASSI 428
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
H P K S K ++ + +G +YP P ++HS ++K + +
Sbjct: 429 HEPAKLSEAKQKEYRVRIGTDYPLPTVDHSEARKAAITMFE 469
>gi|261855425|ref|YP_003262708.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
c2]
gi|261835894|gb|ACX95661.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
c2]
Length = 490
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/432 (34%), Positives = 229/432 (53%), Gaps = 13/432 (3%)
Query: 34 SIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKEL 93
S+ L+ L + S LIIR E+++L+ + + V+ N EP A D IK L
Sbjct: 67 SLRSLAERLASCGSRLIIRQGEPLAELQRLIHETKANRVVWNRRMEPAARAEDTRIKAAL 126
Query: 94 KVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLN 153
+ G S+ + E I NK GKP+ +F+ Y K V + L +YP L
Sbjct: 127 RAEGINVDSFNGNYLHEPWTIQNKQGKPFKVFTPYWKA----VVAAGLDLPTYPEPDNLP 182
Query: 154 NLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRN 213
+ + L+ + + + L + + K + + G GA +F+ I Y RN
Sbjct: 183 TVPRA--LNSLAIDELELLPAIAWDKDFYNHW--QPGEPGAWSRFEDFLPLIDEYAEARN 238
Query: 214 YPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMIL 273
+ G S LS HL FG IS R++V+ + + I +F + +L WR+F +
Sbjct: 239 HLIGTGVSKLSAHLHFGEISPRQIVRYLLDTRGSVLEPRGIEHF--VRELGWREFGAYLA 296
Query: 274 YCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRL 333
Y YP V+ + N W A + W +G TG P++D+A+ L +G+MHNR
Sbjct: 297 YHYPQTVDAPLDARFLNFKWRD---APDDLRAWQRGQTGIPVVDAAMRCLWQTGWMHNRA 353
Query: 334 RMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPII 393
RM+ ASFL KN+ I+W+ G +F + L D D SN WQW+A +G + P+FRIFNP++
Sbjct: 354 RMIVASFLTKNLLIDWRCGAAWFMDTLVDADEPSNTAGWQWTAGTGADAAPYFRIFNPVL 413
Query: 394 QSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSK 453
Q++KFD G FIR+++P+L++L NKY+ +PW AS L +AGI+LGK YP+PI + +S+
Sbjct: 414 QAEKFDPDGTFIRRWVPELARLENKYLFAPWTASETALAQAGIVLGKTYPEPISDLKVSR 473
Query: 454 KNILKRYNFIKN 465
+ L ++ IK
Sbjct: 474 QRALVHFDQIKQ 485
>gi|254991721|ref|ZP_05273911.1| DNA photolyase [Listeria monocytogenes FSL J2-064]
Length = 467
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 224/400 (56%), Gaps = 30/400 (7%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAERDEAAQAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL---NDLGFCKSNLSSLG 186
KKW E++K P K L H+ I + L S+L L
Sbjct: 148 KKWREEIKET-------PFKVTLK--------HENIRKESLFLKYEEQFAEMTSDLPILD 192
Query: 187 IKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
I G A L NFIK + +Y+ R++P ++ TS+LS +LR G ISIR I++ +
Sbjct: 193 I--GERAANTRLANFIKHDVADYDKARDFPELDKTSHLSRYLRTGEISIR----TIWQSL 246
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN 305
++ T+ G T+ +L WRDFY MI +PN N+ ++ Y I WE++ ++ F
Sbjct: 247 QETEATE--GRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKA 301
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W +G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE YF L D+D
Sbjct: 302 WQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDP 361
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASN G WQW+AS+G S P+FRIFNP QS+KFD G FIRKY+ +L+ L +KYIH P K
Sbjct: 362 ASNIGGWQWAASTGTDSVPYFRIFNPTTQSQKFDSTGKFIRKYVKELANLPDKYIHQPEK 421
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
S + ++ G++LGK+YP PI++H +K + RY F K
Sbjct: 422 MSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKE 461
>gi|456354652|dbj|BAM89097.1| deoxyribodipyrimidine photo-lyase type I [Agromonas oligotrophica
S58]
Length = 437
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 239/444 (53%), Gaps = 27/444 (6%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINH--DYEPQAIIRDK 87
++ +S+ L L +L+IR A+K I L + N AV N EP+A+ D
Sbjct: 11 WLAQSLRALQGELHTLGVELVIRRGPAAKVIGALARETNAGAVYWNDVAQAEPRAVAAD- 69
Query: 88 LIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYP 147
++ L I K + D ++ + E+ K G+ +F+ + K+ V + + P
Sbjct: 70 -VEVALDAIDVKSRVFADDLLVDPAELRGKEGRGPRVFTPFWKR----VLALGDPPKPLP 124
Query: 148 VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG-----IKTGASGAKILLNNFI 202
+ + L++ + L ++++LG + G + G A+ L F+
Sbjct: 125 IPARLSSPPGVASL---------AIDELGLEPTRPDWAGGLRATWQAGERAAQERLGKFL 175
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ +++Y +R+ P I+ TS +S HLRFG IS R++ +F + + G +LS
Sbjct: 176 ETAVRSYAADRDRPDIDATSRMSPHLRFGEISPRQIWHAA-RFAAEEHPAFARGIEKFLS 234
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+L WR+F + +LY P++ ++ + +D W ++ A W +G TGYP++D+ +
Sbjct: 235 ELGWREFSRHLLYNNPDLATRNLQASFDAFPWAQNDAA---LQAWQRGRTGYPIVDAGMR 291
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
+L +G MHNR+RMV AS L+K++ I+W+ GE +F + L D D SN +WQW A SG
Sbjct: 292 ELWHTGSMHNRVRMVAASLLVKHLLIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGAD 351
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ P+FR+FNP++Q +KFD G ++R+++P+L++L IH PW A +L +AG+ LG++
Sbjct: 352 AAPYFRVFNPVLQGEKFDSNGTYVRRWVPELARLPASLIHQPWAAKPLELAEAGVALGRS 411
Query: 442 YPKPILEHSLSKKNILKRYNFIKN 465
YP PI+EH ++ L Y ++
Sbjct: 412 YPAPIVEHRHGRERALAAYASLRT 435
>gi|336315016|ref|ZP_08569929.1| deoxyribodipyrimidine photolyase [Rheinheimera sp. A13L]
gi|335880638|gb|EGM78524.1| deoxyribodipyrimidine photolyase [Rheinheimera sp. A13L]
Length = 477
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/449 (30%), Positives = 250/449 (55%), Gaps = 36/449 (8%)
Query: 29 EFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV---IKLNIDAVMINHDYEPQAIIR 85
+FI + +++L L + L+ + L+ I +A+ +++YE + +R
Sbjct: 55 DFIRRRVVQLQTELALLNIPLLAVEGSHYDALPALLQQFIDAGAEALYGHNEYELRERLR 114
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
D + G F + + + IL+KTG Y IF+ ++K W+ +++ ++
Sbjct: 115 DNKVSATFADAGKTSFWFDRKAVMPPGSILSKTGGIYQIFTPFKKTWLARLRETG--VRC 172
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL--LNNFIK 203
+P L + + + +L + + ++ G++ K+L + F +
Sbjct: 173 FPKPKALAD----------VTLQLPALPTMQRGDGSSAAYGVEE----LKVLEQMRQFCR 218
Query: 204 -KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
K Y R++P+++GTS LS +L G +S ++ + + + + G WLS+
Sbjct: 219 DKAAFYQTERDFPALDGTSSLSAYLAIGVVSAQQCISRLQLEAASDWDREKSGASVWLSE 278
Query: 263 LIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
L+WRDFY IL +P+++ +K+F+K+ D I+W ++ + F WC+G TGYP++D+A+
Sbjct: 279 LVWRDFYHHILMAFPDLIKHKAFQKDTDGIVWPNN---PQLFQAWCEGKTGYPIVDAAMR 335
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
QLN +G+MHNRLRM+ ASFL+K++ I+W+WGE YF +KL D D A+NNG WQW+AS+G
Sbjct: 336 QLNQTGWMHNRLRMIVASFLVKDLHIDWRWGEQYFMSKLIDGDFAANNGGWQWAASTGTD 395
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ P+FRIFNP+ QS++FD G+FI+ LP+L+ + K IH P + L +
Sbjct: 396 AAPYFRIFNPVTQSERFDPDGVFIKAMLPELADVPKKQIHWP----------HPLPLWSD 445
Query: 442 YPKPILEHSLSKKNILKRYNFIKNILNRN 470
Y KP+++HS ++ L+ ++ +K +++
Sbjct: 446 YVKPMVDHSKARLRTLELFHTVKKPQDKS 474
>gi|408374589|ref|ZP_11172274.1| DNA photolyase [Alcanivorax hongdengensis A-11-3]
gi|407765547|gb|EKF73999.1| DNA photolyase [Alcanivorax hongdengensis A-11-3]
Length = 488
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/477 (30%), Positives = 240/477 (50%), Gaps = 49/477 (10%)
Query: 1 MEVYCVFI--FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLII----RYA 54
M VYC+ +D + + PLR ++ S++EL L + DL + +A
Sbjct: 29 MAVYCLCPAQWDAHQVAPLRRW---------YVLHSLLELGDALADKGVDLHVLECDDFA 79
Query: 55 IASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEI 114
+ + LV + I A+ N +Y + RD+ + L+ +G D V+ +
Sbjct: 80 GVADALTTLVQEHGITALYCNREYPLNELNRDRAVADTLRPLGVTLNGSDDGVLVPPGAL 139
Query: 115 LNKTGKPYSIFSFYQKKW---IEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIIN--NNI 169
G PY++F Y+++W +E ++P V ++ + + +
Sbjct: 140 RTGKGTPYTVFGAYKRRWDVWMEHQPPAAPASPNWPAGK--GRFVGRQRVEQALAAIDLP 197
Query: 170 ISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLR 228
+ L DL + G A L F K + Y R++P+++GTS LS L
Sbjct: 198 VRLTDL-----------WQPGEQAALTQLARFADKSLAGYRQQRDFPALDGTSSLSTALS 246
Query: 229 FGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKE 287
GT+S+ + + + G W+ +L WRDFY+ I+ +P + +F+ E
Sbjct: 247 AGTLSVAACYRAAMQAMADAGAR--DGAACWVGELAWRDFYRQIMARFPRLARGAAFRPE 304
Query: 288 YDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGI 347
D + W D + F WC+G TGYPL+D+A+ QL ++G+MHNRLRM+TA FL K++ I
Sbjct: 305 TDLLQWHDD---EALFQAWCQGRTGYPLVDAAMRQLVATGWMHNRLRMLTAMFLSKHLWI 361
Query: 348 NWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRK 407
+W+ GE +F L D D A+NNG WQWSAS+G + P+FR+F+P+ QS++FD G FI +
Sbjct: 362 DWRRGEAFFMEHLMDGDFAANNGGWQWSASTGTDAVPYFRVFSPVRQSQRFDPDGKFIAR 421
Query: 408 YLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
Y+P+L+ L NK IH PWK +L +YP P + H+ ++ + +R+ K
Sbjct: 422 YVPELAHLDNKTIHEPWKQP---------LLAPDYPPPCVPHAGVRERVTERFKQAK 469
>gi|429212758|ref|ZP_19203923.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. M1]
gi|428157240|gb|EKX03788.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. M1]
Length = 475
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 137/442 (30%), Positives = 244/442 (55%), Gaps = 30/442 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ L +L + L++R ++ A + + +L L I AV +N +Y
Sbjct: 49 KVDFWLRNLQALQRDLARLNIPLLLREADTWSQAPEVLLQLCRSLGIAAVRVNEEYGIHE 108
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN-KC 141
RD+ +K+ L G F S+ DQ++F +L + G + +FS ++K +++ +
Sbjct: 109 SRRDEAVKRRLAEAGVGFHSHLDQLLFAPGSLLTRGGGYFQVFSQFRKLCYQRLATALPS 168
Query: 142 YLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS-NLSSLGIKTGASGAKILLNN 200
L + P ++ L +N+ + GF S L+ G A L+
Sbjct: 169 CLPAPPAQAPLE-----------VNSAPVPRELPGFTPSATLAREFWPAGEKAAGERLDG 217
Query: 201 FIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F + + +Y+ R+ P ++GTS LS +L G +S R+ + + +++ G W
Sbjct: 218 FAEDGLAHYHERRDRPDLDGTSQLSAYLAAGVLSPRQCLHAALANNRGEFESGGPGPVAW 277
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+++L+WR+FY+ IL +P V ++F+ + + W +A W +G TG+P+ID+
Sbjct: 278 INELLWREFYKHILVGFPQVSRGRAFRAPTEALPW---RHAPAELEAWQQGRTGFPIIDA 334
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QL ++G+MHNRLRM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+
Sbjct: 335 AMRQLLATGWMHNRLRMLTAMFLSKNLLIDWREGERWFMRHLVDGDLAANNGGWQWSAST 394
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G + P+FR+FNP+ QS++FD G F+R++LP+L+ L N+ +H P + G+
Sbjct: 395 GTDAAPYFRLFNPLAQSRRFDPHGRFLRQWLPELAGLDNESLHEP--------SRLGLFG 446
Query: 439 GKNYPKPILEHSLSKKNILKRY 460
YP P+L+ + S++ +L+ +
Sbjct: 447 APGYPAPMLDLAASRERVLEAF 468
>gi|422587424|ref|ZP_16662095.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330873295|gb|EGH07444.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 482
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 246/448 (54%), Gaps = 31/448 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ +++ ++ G F S+ DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQQAMQADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSNLSSLGI-KTGASGAKIL 197
CY + + + VH+ + + I ++ I GF + S + G A
Sbjct: 156 CYTR---LHEAMPRTVHTPEAQQPLSIKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 IEAFADEQISYYKDERDFPAKPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI++++P+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWMPELADLNKKQIHDP-------ASVGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGVADYPKPIVDLSKSRARALAAFKAL 470
>gi|410671657|ref|YP_006924028.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
gi|409170785|gb|AFV24660.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
Length = 459
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 239/459 (52%), Gaps = 41/459 (8%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV FIFD + R +F+ +S+ +L + L + IA I
Sbjct: 33 EVIPCFIFDPRLASSKRLG--FNPNAFQFLLESLEDLQRQFKAKGGRLYLFSGIAEDIIG 90
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L KL DAV +N DY P + RD+ + K + KF D ++ E+ +L + G+P
Sbjct: 91 QLAGKLGADAVFVNEDYTPFSRRRDEATRNTCKGLDVKFTQVHDCLLNEQGTVLTQQGRP 150
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQS---YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
Y +FS + + ++ S L Y + + S KL + N + S
Sbjct: 151 YVVFSQFFRAGSKRNISIPSMLAEGKFYTGEPGIEETPASEKLLPLKNEKLFS------- 203
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+ G + A +L + + + +NY +YPS+ GT+ LS H + GTISIR+
Sbjct: 204 ---------RGGRTQALQVLED-LSRFENYAAEHDYPSLQGTTGLSAHNKLGTISIREF- 252
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ +++ D + QL WRDF+ I + +P+V +SFK+++ NI W Y
Sbjct: 253 ---YHYVRNELGED----HPLIRQLYWRDFFTHIAHHFPSVFGQSFKEKFRNIQW---GY 302
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
F WC G TG+P++D+ + QLN++G+MHNR+RM+ ASFL+K++ I+W GE YFA+
Sbjct: 303 NNSFFHAWCSGSTGFPIVDAGMRQLNATGFMHNRVRMIVASFLVKDLHIDWYLGERYFAS 362
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
KL D+D NNGNWQWSAS+G SQP+FRIFNP +Q +K+D +IRK++P+L ++
Sbjct: 363 KLVDYDPCVNNGNWQWSASTGADSQPYFRIFNPWLQQRKYDPDCEYIRKWVPELREMDAA 422
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
IH LE++ + YP I++H + L
Sbjct: 423 GIHG--------LERSKPPVSTGYPSAIVDHKEERDRTL 453
>gi|404412670|ref|YP_006698257.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC7179]
gi|404238369|emb|CBY59770.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC7179]
Length = 467
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 221/397 (55%), Gaps = 24/397 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ K + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAERDEAAKTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K P K L K I N+ + F + + +
Sbjct: 148 KKWREEIKET-------PFKVTL-------KADNIRKENLFPKYEEQFAEMTCDLPILDS 193
Query: 190 GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L NFIK + +Y+ R++P ++ TS+LS +LR G IS+R I++ ++++
Sbjct: 194 GEKTANTRLANFIKHDVADYDKARDFPELDKTSHLSRYLRTGEISVR----TIWQALQEN 249
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ F +L WRDFY MI +PN N+ ++ Y I WE++ ++ F W
Sbjct: 250 EATEGRAIFE--KELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKAWQD 304
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRMVTASFL K++ I+W++GE YF L D+D ASN
Sbjct: 305 GKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLLIDWRFGEKYFQQMLIDYDPASN 364
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +KYIH P K S
Sbjct: 365 IGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIRKYVKELANLPDKYIHQPEKMSE 424
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ G++LGKNYP P+++H +K + RY F K
Sbjct: 425 IEQKEYGLLLGKNYPFPLIDHKERRKLAIARYEFSKE 461
>gi|15790367|ref|NP_280191.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
gi|10580849|gb|AAG19671.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
Length = 489
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 234/469 (49%), Gaps = 32/469 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF FD +L R+ F+ ++ L ++ SDLI+R+ + +
Sbjct: 45 VAAVFCFDDEVL------AHAAPPRVAFMLDALAALRERYRDLGSDLIVRHGDPAAVLPA 98
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L+ V+ NHDY A RD ++ L G + D V EI G PY
Sbjct: 99 VANDLDATRVVWNHDYSGLATDRDAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPY 158
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+++++ +KW ++ K+ + L +S L S+ +LGF +
Sbjct: 159 SVYTYFWRKWQDREKNPPAPEPEPADLAADTALADTSPL--------PSVQELGFAEPEA 210
Query: 183 SSLGIKTGASGAKILLNNFIK--KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ G + A+ LL+ F + I Y R+YP TS LS HL+FGTI IR + +
Sbjct: 211 AV--PDAGTAAARSLLDAFRESGDIYRYEDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEA 268
Query: 241 IFKFIKKHYKTDC----IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ K TD + F + QL WR+FY +LY NVV+++FK I W D
Sbjct: 269 A-RAAKSDADTDDERENVAAF--IGQLAWREFYAQVLYFNQNVVSENFKAYEHPIEWRDD 325
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
A W G TGYP++D+ + QL + YMHNR+RM+ A+FL K++ ++W+ G ++F
Sbjct: 326 PAA---LQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVAAFLTKDLLVDWRAGYDWF 382
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
KL D D A++NG WQW+AS+G +QP+FR+FNP+ Q +++D +I +++P+L +
Sbjct: 383 REKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGERYDPDADYITEFVPELRDVP 442
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IHS W S + YP PI++HS +++ + + +
Sbjct: 443 ADAIHS-WHELSLSERR---RHAPEYPDPIVDHSQRREDAIAMFERARG 487
>gi|116871975|ref|YP_848756.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116740853|emb|CAK19973.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 470
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 153/405 (37%), Positives = 221/405 (54%), Gaps = 27/405 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RDK + + +Y D + E+ + + Y IF+ Y
Sbjct: 88 DKVFFNQDETGYGAKRDKAARAFFEYNNITVHAYHDAYLHSAEEVKKTSTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGI 187
KKW E++K P KS L II + ++ F K +L L +
Sbjct: 148 KKWREEIKET-------PFKSVLTP-------ENIIKKELFPHDEEQFEKLIQDLPELDL 193
Query: 188 KT-GASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
K G A L NFIK+ + Y R+ P + TS+LS +LR G ISIR +++ +
Sbjct: 194 KVLGEEAANTRLKNFIKRDLAEYAKARDIPDSDQTSHLSRYLRTGEISIR----TVWQAL 249
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN 305
++ T+ F +L WRDFY MI +PN N+ ++ Y I WE++ ++ F
Sbjct: 250 QQTKPTEGRAIFE--KELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKQ 304
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W +G TGYPL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE YF L D+D
Sbjct: 305 WQEGKTGYPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRYGEKYFQQMLIDYDP 364
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASN WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +LS L +K+IH P K
Sbjct: 365 ASNISGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGKFIRKYVEELSNLPDKFIHQPEK 424
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
S + ++ +ILG +YP PI++H +K + RY F K N
Sbjct: 425 MSESQQKEHNLILGDDYPLPIVDHKERRKLAISRYEFSKEQFRGN 469
>gi|302130079|ref|ZP_07256069.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 482
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/450 (32%), Positives = 247/450 (54%), Gaps = 31/450 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL + + L+IR A A + + L +L ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKAIGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ +++ ++ G F S+ DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQQSMQADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSNLSSLGI-KTGASGAKIL 197
CY + + + VH+ + + I ++ I GF + + + G A
Sbjct: 156 CYTR---LHQAMPRTVHTPEAQQPLSIKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 IEAFAGEQISYYKDERDFPARPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP-------ASVGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGVADYPKPIVDLSKSRARALAAFKALPT 472
>gi|47093329|ref|ZP_00231098.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b
H7858]
gi|226223217|ref|YP_002757324.1| DNA photolyase [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|386731355|ref|YP_006204851.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 07PF0776]
gi|405754672|ref|YP_006678136.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2540]
gi|406703371|ref|YP_006753725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes L312]
gi|417314672|ref|ZP_12101366.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1816]
gi|47018298|gb|EAL09062.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. H7858]
gi|225875679|emb|CAS04382.1| Putative DNA photolyase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|328467416|gb|EGF38492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1816]
gi|384390113|gb|AFH79183.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 07PF0776]
gi|404223872|emb|CBY75234.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2540]
gi|406360401|emb|CBY66674.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes L312]
Length = 467
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 224/400 (56%), Gaps = 30/400 (7%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAKRDEAAQAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL---NDLGFCKSNLSSLG 186
KKW E++K P K L H+ I + L S+L L
Sbjct: 148 KKWREEIKET-------PFKVTLK--------HENIRKESLFLKYEEQFAEMTSDLPILD 192
Query: 187 IKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
I G A L NFIK + +Y+ R++P ++ TS+LS +LR G ISIR I++ +
Sbjct: 193 I--GERAANTRLANFIKHDVADYDKARDFPELDKTSHLSRYLRTGEISIR----TIWQTL 246
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN 305
++ T+ G T+ +L WRDFY MI +PN N+ ++ Y I WE++ ++ F
Sbjct: 247 QETEATE--GRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REYFKA 301
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W +G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE YF L D+D
Sbjct: 302 WQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDP 361
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASN G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +KYIH P K
Sbjct: 362 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIRKYVKELANLPDKYIHQPEK 421
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
S + ++ G++LGK+YP PI++H +K + RY F K
Sbjct: 422 MSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKE 461
>gi|254824139|ref|ZP_05229140.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-194]
gi|254932137|ref|ZP_05265496.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
gi|255521880|ref|ZP_05389117.1| DNA photolyase [Listeria monocytogenes FSL J1-175]
gi|405748953|ref|YP_006672419.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes ATCC
19117]
gi|417316860|ref|ZP_12103492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1-220]
gi|424822329|ref|ZP_18247342.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
A]
gi|293583693|gb|EFF95725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
gi|293593371|gb|EFG01132.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-194]
gi|328475764|gb|EGF46505.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1-220]
gi|332311009|gb|EGJ24104.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
A]
gi|404218153|emb|CBY69517.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes ATCC
19117]
Length = 467
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 224/400 (56%), Gaps = 30/400 (7%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAKRDEAAQAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL---NDLGFCKSNLSSLG 186
KKW E++K P K L H+ I + L S+L L
Sbjct: 148 KKWREEIKET-------PFKVTLK--------HENIRKESLFLKYEEQFAEMTSDLPILD 192
Query: 187 IKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
I G A L NFIK + +Y+ R++P ++ TS+LS +LR G ISIR I++ +
Sbjct: 193 I--GERAANTRLANFIKHDVADYDKARDFPELDKTSHLSRYLRTGEISIR----TIWQTL 246
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN 305
++ T+ G T+ +L WRDFY MI +PN N+ ++ Y I WE++ ++ F
Sbjct: 247 QETEATE--GRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REYFKA 301
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W +G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE YF L D+D
Sbjct: 302 WQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDP 361
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASN G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +KYIH P K
Sbjct: 362 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIRKYVKELANLPDKYIHQPEK 421
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
S + ++ G++LGK+YP PI++H +K + RY F K
Sbjct: 422 MSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKE 461
>gi|169236101|ref|YP_001689301.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
gi|47117035|sp|Q9HQ46.2|PHR_HALSA RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|148793|gb|AAA72749.1| photolyase (EC 4.1.99.3) [Halobacterium salinarum]
gi|167727167|emb|CAP13953.1| deoxyribodipyrimidine photolyase [Halobacterium salinarum R1]
Length = 481
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 234/469 (49%), Gaps = 32/469 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF FD +L R+ F+ ++ L ++ SDLI+R+ + +
Sbjct: 37 VAAVFCFDDEVL------AHAAPPRVAFMLDALAALRERYRDLGSDLIVRHGDPAAVLPA 90
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L+ V+ NHDY A RD ++ L G + D V EI G PY
Sbjct: 91 VANDLDATRVVWNHDYSGLATDRDAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPY 150
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+++++ +KW ++ K+ + L +S L S+ +LGF +
Sbjct: 151 SVYTYFWRKWQDREKNPPAPEPEPADLAADTALADTSPL--------PSVQELGFAEPEA 202
Query: 183 SSLGIKTGASGAKILLNNFIK--KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ G + A+ LL+ F + I Y R+YP TS LS HL+FGTI IR + +
Sbjct: 203 AV--PDAGTAAARSLLDAFRESGDIYRYEDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEA 260
Query: 241 IFKFIKKHYKTDC----IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ K TD + F + QL WR+FY +LY NVV+++FK I W D
Sbjct: 261 A-RAAKSDADTDDERENVAAF--IGQLAWREFYAQVLYFNQNVVSENFKAYEHPIEWRDD 317
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
A W G TGYP++D+ + QL + YMHNR+RM+ A+FL K++ ++W+ G ++F
Sbjct: 318 PAA---LQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVAAFLTKDLLVDWRAGYDWF 374
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
KL D D A++NG WQW+AS+G +QP+FR+FNP+ Q +++D +I +++P+L +
Sbjct: 375 REKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGERYDPDADYITEFVPELRDVP 434
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IHS W S + YP PI++HS +++ + + +
Sbjct: 435 ADAIHS-WHELSLSERRR---HAPEYPDPIVDHSQRREDAIAMFERARG 479
>gi|392382530|ref|YP_005031727.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
gi|356877495|emb|CCC98335.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
Length = 485
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 232/468 (49%), Gaps = 26/468 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V V+I +K+ DP ++ S+ L L S L++R + +
Sbjct: 34 VIPVYIREKDAHDPWLPGAASR----WWLHGSLERLGKALAKLGSPLVLRSGDPASVLAA 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + D V+ N P AI RD+ + + L G + +++E I K+ P+
Sbjct: 90 LAEETGADTVLCNRRAGPTAIARDRRVGERLSARGVTVHPHNAALLYEPGTIRTKSDTPF 149
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + K + + + P ++ L +K +++ SL D S
Sbjct: 150 RVFTPFWKALLSMPEPPR------PTRAP-GKLTPPAK---PVSSE--SLKDWCLLPSAP 197
Query: 183 SSLG-----IKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
G G A+ L +F+ + Y R+ P +GTS +S HL FG I R+
Sbjct: 198 DWAGGLRERWTPGEEAARERLADFLDGPVAAYPAERDRPDHDGTSAMSPHLAFGEIGPRQ 257
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ + ++ G +L +L WR+F +L P + + + W +D
Sbjct: 258 IWHAARHAADQRHEL-AAGAEAFLRELGWREFNHHLLREEPGIPDTPLDTRFARFPWRTD 316
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
K W G TGYP++D+ + QL +G+MHNR+RM+ SFLIK++ I W+ GE++F
Sbjct: 317 ---KAGLRAWQSGRTGYPIVDAGMRQLWQTGWMHNRVRMIVGSFLIKDLLIPWQEGESWF 373
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
+ L D D+A+N GNWQW A G + PFFR+FNPI+Q +KFD +G ++R+Y+P+L L
Sbjct: 374 WDTLVDADIANNAGNWQWVAGCGADAAPFFRVFNPILQGEKFDPEGAYVRRYVPELEALP 433
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
N++IH PW+A L +AG+ LGK+YP+P+++H ++ L + IK
Sbjct: 434 NRWIHKPWEAPDEALRQAGVKLGKDYPRPVIDHGTARDRALAAFQEIK 481
>gi|110833627|ref|YP_692486.1| DNA photolyase [Alcanivorax borkumensis SK2]
gi|110646738|emb|CAL16214.1| DNA photolyase [Alcanivorax borkumensis SK2]
Length = 484
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 143/474 (30%), Positives = 245/474 (51%), Gaps = 31/474 (6%)
Query: 1 MEVYCVFI--FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASK 58
+ VYC+ +D++ + PLR ++E R + +S+ I+L D D + A
Sbjct: 37 LAVYCLCQGQWDRHQVAPLRRWYVLESLRE--LGESLANRGIDLHVLDVDTFEKVPEALA 94
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
E + + + N +Y RD L+ + L+ G + D V+ +
Sbjct: 95 EFAQ---SQGVTHLYCNREYPLNEKQRDTLVAERLREQGIILRGFDDGVLVPPAALRTGK 151
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
G PY++F Y+K+W + + P + +K + + + D+
Sbjct: 152 GTPYTVFGAYKKRWDVWTADHHPAMTPVPSQCRAEGTFMGAK----VVAKALEMLDVPEA 207
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ + G A L+ F+++ + +Y NR++P ++GTS LS+ L GT+S+
Sbjct: 208 LTQQWA----PGEEAAWQQLDQFMERSLADYRRNRDFPDLSGTSGLSVALSAGTLSVASC 263
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESD 296
+ + + D G W+ +L WRDFY+ I+ +P V + F+ E D + W++D
Sbjct: 264 FRAATQAMADAGSRD--GAACWIDELAWRDFYRQIMAQFPRVSRGQGFRPETDLLEWKND 321
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
+ + F WC+G TGYPL+D+A+ QL ++G+MHNRLRMVTA FL K++ ++W+ GE +F
Sbjct: 322 D---ELFAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRMVTAMFLSKHLWLDWRRGEAFF 378
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
L D D A+NNG WQWSASSG + P+FR+FNP+ Q ++FD +G FI ++PQL L
Sbjct: 379 MTHLIDGDFAANNGGWQWSASSGTDAVPYFRVFNPVRQGQRFDSEGRFIAHWVPQLRDLD 438
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+K IH PWK +L ++YP P++ H+ ++ + + K+ ++
Sbjct: 439 SKQIHEPWKQP---------LLARDYPPPVVPHAGVRERVTVAFKAAKSRFDKT 483
>gi|28868336|ref|NP_790955.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
str. DC3000]
gi|422659492|ref|ZP_16721917.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|28851573|gb|AAO54650.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331018110|gb|EGH98166.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 482
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/450 (32%), Positives = 246/450 (54%), Gaps = 31/450 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGKLNVPLLIREADTWDQAPEVLATLCKQFKVEGLHLNEEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ +++ ++ G F S+ DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQQSMQADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSNLSSLGI-KTGASGAKIL 197
CY + + + VH+ + + I ++ I GF + + + G A
Sbjct: 156 CYTR---LHQAMPRTVHTPEAQQPLSIKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 IEAFAGEQISYYKDERDFPARPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI+++LP+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP-------ASVGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGVADYPKPIVDLSKSRARALAAFKALPT 472
>gi|260776993|ref|ZP_05885887.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260606659|gb|EEX32933.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 471
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/471 (32%), Positives = 267/471 (56%), Gaps = 36/471 (7%)
Query: 3 VYCVFI-----FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIAS 57
V C++ + ++ L P+++ I RR++ + + + L I L + D Y ++
Sbjct: 28 VVCIYTATPETWHEHGLAPIQADLIY--RRLQGLKQDLESLRIPLLYEEVDT---YTESA 82
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
K + ++ L+ + V++N +YE RD ++ L + S D+ IF I+NK
Sbjct: 83 KRVAEIATLLSANRVLVNKEYEVNEQRRDATLEMCLNDTAIQVKSSDDKCIFAPGSIVNK 142
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
G + +F+ ++K ++ ++ +C S+ V+ + SS+L + +++ ++ +D+ F
Sbjct: 143 QGSYFKVFTPFKKAYLAEL--GEC---SFQVRK--PQVACSSRLPEHLSS-LLFADDVTF 194
Query: 178 CKSNLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
S L +F + ++ Y NR++P+I GTS LS +L G +S+R+
Sbjct: 195 SYPREPSDQFAADTQSIIQTLRDFDSQDVEGYASNRDFPAIAGTSQLSPYLAIGALSVRQ 254
Query: 237 -LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWE 294
+ +L+F + G W S+LIWR+FYQ ++Y + +SF D ++W+
Sbjct: 255 CMARLMFGQAPPLSQ----GREVWQSELIWREFYQHLIYFEAKLSKGRSFVDWGDRLVWK 310
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
++ + W +G TG+P++D+A+ QLN +G+MHNRLRM+ ASFL+K++ ++W+ GE
Sbjct: 311 NE---PQYIEAWKQGETGFPIVDAAMKQLNQTGWMHNRLRMIVASFLVKDLHVDWRVGER 367
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF NKL D D A+NNG WQW AS+GC QP+FRIFNPI Q ++FD QG F+R++LP+L++
Sbjct: 368 YFINKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFDPQGEFVRQWLPELAQ 427
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ +KY+H PWK S + +YP PI++H + ++ L+ Y K+
Sbjct: 428 VPDKYLHQPWKWSG--------VRSLSYPPPIVDHKVEREVTLRLYKEAKD 470
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 148/436 (33%), Positives = 242/436 (55%), Gaps = 20/436 (4%)
Query: 34 SIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKEL 93
S+ L I L S LI+R+ A ++KLV + +AV+ N Y+P + D IKK L
Sbjct: 64 SLAALQIALDAVGSKLILRHGEALTVLEKLVKETGAEAVVWNRRYDPAGVEVDTQIKKAL 123
Query: 94 KVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLN 153
+ G + S+ Q++ E + TG Y ++ + W +S + +P+++
Sbjct: 124 RSKGIEANSFAGQLLHEPTRLRTGTGNHYKTYTPF---WRAFEQSGEP---PFPIEAPRR 177
Query: 154 NLVHSSKLHKIINNNIISLNDLGFCKSNLSS--LGIKT-GASGAKILLNNFIK-KIKNYN 209
L + ++ + L K N +S I T G + A L +F+ + +Y
Sbjct: 178 LLAPG----RWPQSDSLDAWSLLPAKPNWASEFADIWTPGEAAALDKLKDFVDGALNDYA 233
Query: 210 INRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFY 269
I R++P TS LS HL G IS ++ + + TD + F ++IWR+F
Sbjct: 234 IGRDFPDKPATSLLSPHLALGEISPARMWHAT-RGLPDKVGTDNVVRFR--KEIIWREFC 290
Query: 270 QMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYM 329
L+ +P + ++ YD+ W SD K +W +G TGYP++D+ + QL G+M
Sbjct: 291 YHQLFHFPKLRTANWNDRYDDFPWLSD---AKRLKSWQRGQTGYPIVDAGMRQLWRHGWM 347
Query: 330 HNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIF 389
HNR+RM+ ASFLIK++ I+W+ GE +F + L D D A+N NWQW A SG + PFFRIF
Sbjct: 348 HNRVRMIAASFLIKDLLIDWREGEAWFRDTLVDADPAANTANWQWVAGSGADASPFFRIF 407
Query: 390 NPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
NP++Q +KFD G ++R ++P+LSKL +KYIH P++A L++AGI LG++YP+PI++H
Sbjct: 408 NPVLQGEKFDPDGGYVRTFVPELSKLDSKYIHRPFEAPDDVLKRAGIELGRHYPRPIVDH 467
Query: 450 SLSKKNILKRYNFIKN 465
+++++ L + +K+
Sbjct: 468 AMARQRALAAHASLKD 483
>gi|421138201|ref|ZP_15598271.1| DNA photolyase, FAD-binding protein [Pseudomonas fluorescens
BBc6R8]
gi|404510624|gb|EKA24524.1| DNA photolyase, FAD-binding protein [Pseudomonas fluorescens
BBc6R8]
Length = 481
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 145/449 (32%), Positives = 253/449 (56%), Gaps = 33/449 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ L+ L + L+IR+A A + + L +L++++V +N +Y
Sbjct: 47 KVDFWLRNLQRLNSALGELNIPLLIRHADTWDQAPEVLAGLCQELSVESVHVNDEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + K L+ G F +Y DQ+ F+ +L KTG + +FS ++K CY
Sbjct: 107 ERRDAAVAKALEAQGITFHTYLDQLFFQPGSVLTKTGTYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHK--IINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLN 199
+ + L LV + K + ++ + + GF + + + G + A+ L+
Sbjct: 158 SR---LHGALPRLVATPKAQAPLTLKSDEVPDHVEGFATPSEALRALWPAGEAEARRRLD 214
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F +I Y R++P+ GTS LS +L G +S R+ + + + +++ IG T
Sbjct: 215 QFADAQISYYKDERDFPAKPGTSQLSAYLAAGVVSPRQCLHAALQSNQGEFESGDIGAIT 274
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++L+WR+FY+ IL YP V +++F+ E + + W + + ++ W + TG P+ID
Sbjct: 275 WINELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRN---SPEDLKAWQEARTGLPIID 331
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S
Sbjct: 332 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS 391
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIF+P+ QS+KFD +G+FI+ +LPQL+ L+ K +H+P + G +
Sbjct: 392 TGTDSAPYFRIFSPLSQSEKFDGEGVFIKHWLPQLAALNKKEVHNP--------DAVGGL 443
Query: 438 LG-KNYPKPILEHSLSKKNILKRYNFIKN 465
G +YP+PI++ S++ L + + +
Sbjct: 444 FGVADYPRPIVDLKKSRERALAAFRSLPS 472
>gi|398860974|ref|ZP_10616615.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM79]
gi|398233993|gb|EJN19889.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM79]
Length = 493
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 147/450 (32%), Positives = 251/450 (55%), Gaps = 28/450 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+++F +++ EL L + L+IR A E K+++ +L I AV +N +Y
Sbjct: 58 KVDFWLRNLGELRHALDALNIPLLIRKASRWDEAPKVLLELCQQLKIGAVHVNEEYGIHE 117
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + LK G F+SY DQ++ + +L +TG + +FS ++K E++ ++
Sbjct: 118 TRRDAAVAQILKAQGIDFYSYLDQLLLKPGTVLTRTGTYFQVFSQFRKVCYERLHASLPR 177
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L + P + ++ + S +L +L G + A+ L F
Sbjct: 178 LVTAPAIQAPLGIASDEPPSRVEGFDTPS--------DSLRAL-WPAGETEARRRLETFT 228
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+I Y+ R++P+ GTS LS +L G IS R+ + + + +++ +G TW++
Sbjct: 229 DTQIDYYHSERDFPAKPGTSQLSAYLTAGVISPRQCLHAALQSNQGEFESGKVGAVTWIN 288
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+L+WR+FY+ IL YP V +++F+ E + + W A ++ W +G TG P+ID+A+
Sbjct: 289 ELLWREFYKHILVGYPRVSRHRAFRPETEALAWRD---APEDLKAWQQGRTGLPIIDAAM 345
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL +G+MHNRLRM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 346 RQLLETGWMHNRLRMIVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGT 405
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
S P+FRIFNP+ QS+KFD +G+FI+ +LPQ+++++ K +H+ + G+
Sbjct: 406 DSAPYFRIFNPLSQSEKFDAEGVFIKHWLPQINEMNKKDLHN-------RARLDGLFGVT 458
Query: 441 NYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP PI+ S S++ L + KN+ +R
Sbjct: 459 DYPSPIVNLSTSRERALAAF---KNLPSRQ 485
>gi|94501522|ref|ZP_01308040.1| Deoxyribodipyrimidine photolyase [Bermanella marisrubri]
gi|94426340|gb|EAT11330.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
Length = 478
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 154/456 (33%), Positives = 254/456 (55%), Gaps = 47/456 (10%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQ 81
R+ I + + +L+ +L LI+ K I K + + N++ + N +YE
Sbjct: 49 RQRSLIRQQLEDLTQSLAALGVPLIVIDTADFKSIPKTFVSVLQQYNVEQLFCNAEYEVN 108
Query: 82 AIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKC 141
+ K + + L+ K Y DQ + + I+NK +PY +F+ ++K ++ ++
Sbjct: 109 EVALTKNVTEALQQQDIKCHEYHDQCLIQPGVIVNKQDQPYKVFTAFKKAYLAQLDI--- 165
Query: 142 YLQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSNLSSLGIKTGASGAKILLN 199
Y+ +L K + + +I +L +++ + I ++ L+
Sbjct: 166 ---------YMRDLYPLPKKQQAPKVKTDISALQ-------SIAQVDIDPWQGSEQVALD 209
Query: 200 ---NFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIG 255
F K +IK Y +R+ PS++GTS LS +L G++S+R+ ++ + K + G
Sbjct: 210 ALDEFCKDRIKAYKRDRDIPSLDGTSTLSPYLAIGSLSVRQCWQMSQQVSPSGSKPE--G 267
Query: 256 YFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314
TW S+LIWRDFY+ ++Y +P+V K+FK+E D++ W+ D + F WC G TGYP
Sbjct: 268 IATWQSELIWRDFYRHLIYFFPHVCQYKAFKQETDHLPWKKD---QALFQAWCDGRTGYP 324
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
L+D+A+ QLN +G+MHNRLRMV A FL K++ I+W+ GE YF +L D DLASNNG WQW
Sbjct: 325 LVDAAMRQLNQTGWMHNRLRMVAAMFLSKHLFIDWRLGEAYFMQQLIDGDLASNNGGWQW 384
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
SAS+G + P+FRIFNPI QS++FD +G F+R+Y+P+L+ L +K IH+P + KL
Sbjct: 385 SASTGVDAVPYFRIFNPIRQSERFDSKGTFLRQYVPELASLDDKRIHNPDPITVKKL--- 441
Query: 435 GIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
YP PI++H K+ +++ + K + N
Sbjct: 442 ------GYPAPIVDH---KQAVVQTKQWFKELDASN 468
>gi|424044148|ref|ZP_17781771.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HENC-03]
gi|408888677|gb|EKM27138.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HENC-03]
Length = 471
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 149/457 (32%), Positives = 253/457 (55%), Gaps = 34/457 (7%)
Query: 9 FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLN 68
+ ++ + P+++ I RR+ + + + EL++ L + + +++ ++ IK + LN
Sbjct: 39 WQEHHMAPMQADLIA--RRLMHLEEELAELNVPLLYKE---VPKFSDVTEVIKGWALSLN 93
Query: 69 IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFY 128
+++VM N YE D+ + + L F ++ D+ + +LNK G+ + +F+ +
Sbjct: 94 VESVMANIHYEVNEQALDRDVSEVLAKSDVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPF 153
Query: 129 QKKWIEKVKS---NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
++ W+ K + +K Q+ K L V + H D+ F SS
Sbjct: 154 KRAWLLKFQMPMVSKPQPQAELSKDVLQT-VEADLYHA----------DVPFSYPRESSE 202
Query: 186 GIKTGASGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ L F ++ + Y R+ P+++GTS LS +L G +S R+ + ++
Sbjct: 203 RWHASTTDIVQQLREFARERSDAYQAERDLPAVDGTSQLSPYLAIGALSPRQCIARLYA- 261
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNF 303
+ G TWLS++IWR+FYQ +L P +V K F + I W +Y ++ F
Sbjct: 262 -ENPLPDLTEGKATWLSEIIWREFYQHLLVFEPKLVRGKGFIPWEEKIQW---SYDEQAF 317
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
W G TGYP++D+A+ QLN++G+MHNRLRMV ASFL K++ I+W+WGE YF +KL D
Sbjct: 318 ERWKIGTTGYPIVDAAMRQLNTTGWMHNRLRMVVASFLTKDLHIDWRWGEAYFMSKLVDG 377
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
D A+NNG WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ ++ NK+IH+P
Sbjct: 378 DFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGSFVRHWVPEIKEVPNKFIHNP 437
Query: 424 WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
W S + L +Y KP+++H + ++ L+ +
Sbjct: 438 WLWSGFNL--------LDYHKPMVDHKVEREITLRLF 466
>gi|300765347|ref|ZP_07075330.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N1-017]
gi|404280146|ref|YP_006681044.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2755]
gi|404285957|ref|YP_006692543.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|300513908|gb|EFK40972.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N1-017]
gi|404226781|emb|CBY48186.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2755]
gi|404244886|emb|CBY03111.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 7
str. SLCC2482]
Length = 467
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 224/400 (56%), Gaps = 30/400 (7%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAKRDEAAQAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL---NDLGFCKSNLSSLG 186
KKW E++K P K L H+ I + L S+L L
Sbjct: 148 KKWREEIKET-------PFKVTLK--------HENIRKESLFLKYEEQFAEMTSDLPILD 192
Query: 187 IKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
I G A L NFIK + +Y+ R++P ++ TS+LS +LR G ISIR I++ +
Sbjct: 193 I--GERAANTRLANFIKHDVADYDKARDFPELDKTSHLSRYLRTGEISIR----TIWQTL 246
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN 305
++ T+ G T+ +L WRDFY MI +PN N+ ++ Y I WE++ ++ F
Sbjct: 247 QETEATE--GRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REYFKA 301
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W +G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE YF L D+D
Sbjct: 302 WQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDP 361
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASN G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +KYIH P K
Sbjct: 362 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIRKYVKELANLPDKYIHQPEK 421
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
S + ++ G++LGK+YP PI++H +K + RY F K
Sbjct: 422 MSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKE 461
>gi|46906833|ref|YP_013222.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. F2365]
gi|405751816|ref|YP_006675281.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2378]
gi|424713475|ref|YP_007014190.1| Deoxyribodipyrimidine photo-lyase [Listeria monocytogenes serotype
4b str. LL195]
gi|46880099|gb|AAT03399.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. F2365]
gi|404221016|emb|CBY72379.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2378]
gi|424012659|emb|CCO63199.1| Deoxyribodipyrimidine photo-lyase [Listeria monocytogenes serotype
4b str. LL195]
Length = 467
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 224/400 (56%), Gaps = 30/400 (7%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAKRDEAAQAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL---NDLGFCKSNLSSLG 186
KKW E++K P K L H+ I + L S+L L
Sbjct: 148 KKWREEIKET-------PFKVTLK--------HENIRKESLFLKYEEQFAEMTSDLPILD 192
Query: 187 IKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
I G A L NFIK + +Y+ R++P ++ TS+LS +LR G ISIR I++ +
Sbjct: 193 I--GERAANTRLANFIKHDVADYDKARDFPELDKTSHLSRYLRTGEISIR----TIWQSL 246
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN 305
++ T+ G T+ +L WRDFY MI +PN N+ ++ Y I WE++ ++ F
Sbjct: 247 QETEATE--GRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REYFKA 301
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W +G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE YF L D+D
Sbjct: 302 WQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDP 361
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASN G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +KYIH P K
Sbjct: 362 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIRKYVKELANLPDKYIHQPEK 421
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
S + ++ G++LGK+YP PI++H +K + RY F K
Sbjct: 422 MSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKE 461
>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 483
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 243/437 (55%), Gaps = 14/437 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L +L++ A + ++ ++ K +AV N Y+P I D I
Sbjct: 58 WLHHSLEALDRSLHERQGELVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHI 117
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K+EL+ + S+ Q++ E + ++ G PY +++ + + +E + L++ P K
Sbjct: 118 KQELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRA-LEGAGEAEPPLEA-PAK 175
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNY 208
L + +S+ K + + D ++L + G GA+ L+ F++ ++K Y
Sbjct: 176 LRLASQRPASETLKSWKL-LPTKPDWAKGFADLWT----PGEQGARERLSAFVEDELKGY 230
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDF 268
NR+YP+ TS LS HL G IS ++ + D + + ++ WR+F
Sbjct: 231 KENRDYPAKPATSMLSPHLALGEISPARIWDATRGLSNRVPAADIVHF---RKEIAWREF 287
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGY 328
+L+ +P + ++++ +D W +D+ +F W +G TGYP++D+ + QL G+
Sbjct: 288 SYHLLFHFPRLASENWNDRFDGFKWRNDD---GDFEAWRRGMTGYPIVDAGMRQLWRHGW 344
Query: 329 MHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRI 388
MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D A+N +WQW A SG + PFFRI
Sbjct: 345 MHNRVRMIVASFLIKDLMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRI 404
Query: 389 FNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
FNP++Q + FD G ++R ++P+L +L KYIH P++A L++AGIILG+ YPKPI++
Sbjct: 405 FNPMLQGETFDPDGDYVRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTYPKPIVD 464
Query: 449 HSLSKKNILKRYNFIKN 465
H+ ++ L Y K+
Sbjct: 465 HASARDRALAAYKATKD 481
>gi|440680804|ref|YP_007155599.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
gi|428677923|gb|AFZ56689.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
Length = 478
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 154/454 (33%), Positives = 241/454 (53%), Gaps = 31/454 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D +IL + I R+ ++ + L S L+I I
Sbjct: 31 VVGVFCLDPDIL----QRDDIAPARVTYMIGCLQALQKRYNQAGSQLLILQGNPVSVIPD 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L L AV N D EP + RD + L G +F ++ DQ++ EI + + P
Sbjct: 87 LAAALQAKAVFWNWDVEPYSQTRDIAVIDSLTEKGIQFLNHNWDQLLHSPTEIFSGSKTP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN----NIISLNDLGF 177
Y++++ + K WI K K+ PV++ N +++ +I N+ S DLGF
Sbjct: 147 YTVYTPFWKNWISKPKAT-------PVETLPNFAGLTAQEQEIAQQAGAINLPSAQDLGF 199
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
L I+ G + A+ L F I Y RN+P+I+GTS LS L+FG I IR
Sbjct: 200 IWDG--ELVIEPGEAAAQERLETFTHSMINGYQEQRNFPAIDGTSQLSAALKFGVIGIRT 257
Query: 237 LVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + ++ + TW +L WR+FYQ +Y +P++ + +++ + + W++
Sbjct: 258 VWQATIEALENSNSEEVTASIRTWQQELAWREFYQHAMYYFPDLADGAYRDSFKSFPWQN 317
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ +K+F WC+G TGYP++D+A+ QLN G+MHNR RM+ ASFL K++ IN +WGE Y
Sbjct: 318 N---EKHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVASFLTKDLIINPQWGEKY 374
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F KL D DL++NNG WQWSASSG +P RIFNP Q++KFD +G +IR+++ +L +
Sbjct: 375 FMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDGEGEYIRQWVSELKSV 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
+Y+ S + LE+ I YP PI++H
Sbjct: 434 DTEYLVS---GNITPLERRSI----GYPAPIVDH 460
>gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175848|ref|YP_004652658.1| hypothetical protein PUV_18540 [Parachlamydia acanthamoebae UV-7]
gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480206|emb|CCB86804.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 474
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 154/440 (35%), Positives = 238/440 (54%), Gaps = 26/440 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L++ LIIR + ++ ++ + N DAV + YEP AI RD +
Sbjct: 53 WLHHSLKSLENDLRSLGLPLIIRKGKSLDCLRDVIKETNADAVFWSRRYEPYAIKRDIQV 112
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K +L G S+ V++E I NK GKP+ +F+F+ K C + P+
Sbjct: 113 KSKLSEEGLLAKSFPGNVLYEPWSIQNKQGKPFQVFTFFWKN---------CLAKEQPLA 163
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI----KTGASGAKILLNNFIKK- 204
+ K I+ + + + DL + GI K G+ AK L+ F++
Sbjct: 164 PLSAPIGVKGK---IVEVDSLHIEDLKLLPTTSWDEGIAHTWKPGSVYAKEFLSYFLEGG 220
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+YN R+ P + G S LS +L FG IS+R + I +KK + Y L QL
Sbjct: 221 AHDYNERRDRPDLPGVSRLSPYLHFGEISVRMVWDEI---VKKLGFQEAEPY---LRQLG 274
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
WRDF +LY +P + ++E+ W+ + KK W KG TGYP +D+ + QL
Sbjct: 275 WRDFAYHLLYHFPKTPEEPLRQEFAYFPWKEN---KKLLKVWQKGMTGYPFVDAGMRQLW 331
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
+G+MHNR RMV SFL+K++ + W+ G +F + L D DLA+N WQW A SG + P
Sbjct: 332 MTGWMHNRARMVVGSFLVKDLLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAP 391
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNPI Q +KFD +G ++RK++P+++ L +K+IH PW+A LEKAG+ LG+ YP
Sbjct: 392 YFRIFNPITQGEKFDPEGSYVRKWVPEIANLPDKWIHKPWEAPLDVLEKAGVKLGQTYPY 451
Query: 445 PILEHSLSKKNILKRYNFIK 464
PI+ H ++ L+ + IK
Sbjct: 452 PIVNHDEARLAALEAFEEIK 471
>gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
Length = 465
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 239/466 (51%), Gaps = 32/466 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD +LD R+ F+ ++ L ++ SDL++ + + +
Sbjct: 27 VVPVFIFDTAVLDHAGPP------RVAFMLDALDSLREWYRDKGSDLVVAEGDPTSVLPE 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + V DY A RD +++ L + ++ V+ E EI G PY
Sbjct: 81 LAAQHGAEKVTWGKDYSGLARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+++ +KW ++ K+ S + L + + + +L DLGF +
Sbjct: 141 SVFTYFGRKWHDREKAAPYDPPS------------ADTLADVDGDALPTLADLGFEEPEA 188
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
G A+ LL++F+ + + Y R++P+ TS LS HL+FGTI IR++
Sbjct: 189 DVPA--AGTEEARALLDDFLDENVYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRT 246
Query: 242 --FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
K + D + F SQL WR+FY +L+ +P+VV+ ++K + I WE+D
Sbjct: 247 QAAKEGTGGDRRDSVREFQ--SQLAWREFYTQVLFAHPHVVSSNYKSYENPIEWEND--- 301
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
++ W G TGYP++D+ + QL YMHNR+RM+ ASFL K++ I+W+ G +F K
Sbjct: 302 EELLQAWKDGDTGYPIVDAGMRQLRDEAYMHNRVRMIVASFLTKDLLIDWRHGYEWFREK 361
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D D A++NG WQW+AS+G +QP+FRIFNP+ Q + +D +I++Y+P+L + +
Sbjct: 362 LVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPNAEYIKEYVPELRDAAPEI 421
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH W S ++ YP P+++HS ++ L + +
Sbjct: 422 IHD-WNDCSLTQRRSA---APEYPDPVVDHSERREEALAMFERARG 463
>gi|47096881|ref|ZP_00234460.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a
F6854]
gi|254911267|ref|ZP_05261279.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
gi|254935594|ref|ZP_05267291.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
gi|386046246|ref|YP_005964578.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J0161]
gi|47014746|gb|EAL05700.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
1/2a str. F6854]
gi|258608175|gb|EEW20783.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
gi|293589198|gb|EFF97532.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
gi|345533237|gb|AEO02678.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J0161]
Length = 467
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 221/397 (55%), Gaps = 24/397 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ K + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAERDEAAKTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K P K L K I N+ + F + + +
Sbjct: 148 KKWREEIKET-------PFKVTL-------KADNIRKENLFPKYEEQFAEMTCDLPILDS 193
Query: 190 GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L NFIK + +Y+ R++P ++ TS+LS +LR G IS+R I++ ++++
Sbjct: 194 GEKTANTRLANFIKHDVADYDKARDFPELDKTSHLSRYLRTGEISVR----TIWQALQEN 249
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ F +L WRDFY MI +PN N+ ++ Y I WE++ ++ F W
Sbjct: 250 EATEGRAIFE--KELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKAWQD 304
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRMVTASFL K++ I+W++GE YF L D+D ASN
Sbjct: 305 GKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLLIDWRFGEKYFQQMLIDYDPASN 364
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +KYIH P K S
Sbjct: 365 IGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIRKYVKELANLPDKYIHQPEKMSE 424
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ G++LGK+YP P+++H +K + RY F K
Sbjct: 425 IEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKE 461
>gi|422651895|ref|ZP_16714685.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330964968|gb|EGH65228.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 482
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 246/448 (54%), Gaps = 31/448 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + L + ++ + +N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ +++ ++ G F S+ DQ++F+ IL KTG + +F+ ++K
Sbjct: 105 NETRRDQAVQQAMQADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKSNLSSLGI-KTGASGAKIL 197
CY + + + VH+ + + I ++ I GF + S + G A
Sbjct: 156 CYTR---LHEAMPRTVHTPEAQQPLSIKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRR 212
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+ F ++I Y R++P+ GTS LS +L G IS R+ + + ++T +G
Sbjct: 213 IEAFADEQISYYKDERDFPAKPGTSQLSAYLVAGVISPRQCLHAALASNQGEFETGDVGT 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALKWRD---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+FI++++P+L+ L+ K IH P G
Sbjct: 390 SSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWMPELADLNKKQIHDP-------ASVGG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFI 463
+ +YPKPI++ S S+ L + +
Sbjct: 443 LFGVADYPKPIVDLSKSRARALAAFKAL 470
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 228/442 (51%), Gaps = 29/442 (6%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L+ +L L +R A ++ +V AV N YEP A+ RD I
Sbjct: 54 WLHHSLTALAHDLARLGVTLTLRRGRAEFVLENIVADAGAGAVYWNRLYEPWAMRRDSEI 113
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K +L+ G S+ ++FE + NK G+P+ +F+ + + C P
Sbjct: 114 KSQLRARGVMVESFNGSLLFEPGGLRNKQGEPFRVFTPFWRA---------CLAAEAPDA 164
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG-----IKTGASGAKILLNNFIKK 204
L KL +L D + G + G A L F KK
Sbjct: 165 P----LPAPKKLTAAPPPASDALADWRLLPTKPDWAGGLRETWRAGEHAALERLAEFAKK 220
Query: 205 -IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
+++Y I+R++ + G S +S HL FG +S R+ I+ I + Y L ++
Sbjct: 221 RVRDYKIDRDFMAREGVSRMSPHLHFGEVSPRR----IWAEITEAAGDAGAAY---LREI 273
Query: 264 IWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+F +L P + ++ + + + W D A + W +G TGYPL+D+A+ +L
Sbjct: 274 GWREFCHHLLVANPQMPERALDERFRDFPWREDAAALEA---WRRGQTGYPLVDAAMREL 330
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G MHNR RMV ASFL+K++ I W+ GE +F + L D DLA+N+G WQW A G +
Sbjct: 331 WITGNMHNRARMVAASFLVKHLLIPWQEGERWFWDTLVDADLANNSGGWQWVAGCGADAA 390
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYP 443
P+FR+FNP++Q +KFD +G ++R+Y+P+L++L ++IH PW+A L AG+ LG+ YP
Sbjct: 391 PYFRVFNPVLQGEKFDPEGDYLRRYVPELARLDARHIHCPWEAPEEVLRAAGVRLGETYP 450
Query: 444 KPILEHSLSKKNILKRYNFIKN 465
+PI++H+ ++ LK + +
Sbjct: 451 RPIVDHAKARDRALKAFEATRG 472
>gi|395650278|ref|ZP_10438128.1| deoxyribodipyrimidine photolyase [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 481
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 246/449 (54%), Gaps = 33/449 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ LS L + L+IR+A A + L +L++ V +N +Y
Sbjct: 47 KVDFWLRNLQPLSQALAALNIPLLIRHAATWDQAPAVLGTLSRELSVAGVHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + K L+ G F Y DQ+ F+ +L KTG + +FS ++K CY
Sbjct: 107 SRRDAAVAKALEADGVTFHRYLDQLFFQPGSVLTKTGTYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIIN--NNIISLNDLGFCKSNLSSLGI-KTGASGAKILLN 199
+ + S L L+ + K I ++ I GF + + + G A+ L+
Sbjct: 158 SR---LHSALPRLIATPKAQAPITLKSDPIPGQVEGFEPPSDTLRALWPAGEDEARRRLD 214
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F ++I +Y R++P+ GTS LS +L G +S R+ + + +++ +G T
Sbjct: 215 AFAEQRISDYKDQRDFPAKPGTSQLSAYLAAGVVSPRQCLHAALQSNGGEFESGDVGTIT 274
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+S+L+WR+FY+ IL YP V +++F+ E + + W A ++ W + TG P+ID
Sbjct: 275 WISELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRD---APQDLAAWQEARTGLPIID 331
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S
Sbjct: 332 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS 391
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIF+P+ QS+KFD G+FI+ +LP+L+ L+ K +H+P + G +
Sbjct: 392 TGTDSAPYFRIFSPLSQSEKFDGDGVFIKHWLPELAALNKKDVHNP--------QALGGL 443
Query: 438 LG-KNYPKPILEHSLSKKNILKRYNFIKN 465
G +YP+ I++ S++ L + + +
Sbjct: 444 FGIADYPRSIVDLKTSRERALAAFRSLPS 472
>gi|347547998|ref|YP_004854326.1| putative DNA photolyase [Listeria ivanovii subsp. ivanovii PAM 55]
gi|346981069|emb|CBW84994.1| Putative DNA photolyase [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 471
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 151/403 (37%), Positives = 227/403 (56%), Gaps = 23/403 (5%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + G ++ D + +E+ + K Y IF+ Y
Sbjct: 89 DKVYFNRDETGNGSKRDEAACQFFTEEGINIHAFYDTYLHHADEVKKSSSKYYKIFTPYY 148
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K +++ P K +L + + F + + + LG K
Sbjct: 149 KKWQEEIKELPLHVKLNPAKIEKESLFPE-------DEKRFARMTQDFSEVDATILGEK- 200
Query: 190 GASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
A+ L FIK+ + YN R+YP+++ TS+LS LR G +SIR +++ ++
Sbjct: 201 ---AAQTRLATFIKEDLAQYNKVRDYPNLDRTSHLSRFLRTGELSIR----TVWQAVQGA 253
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD-NYAKKNFLNWC 307
TD G T+ +L WRDFY MI +PN N++ + Y I WE++ NY F W
Sbjct: 254 ELTD--GRATFEKELCWRDFYNMIYVSFPNQKNEAIQTNYRFIEWENNRNY----FQKWQ 307
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
+G TGYPL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W+WGE YF L D+D AS
Sbjct: 308 QGATGYPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRWGEKYFEQMLIDYDPAS 367
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ + NK+IH P K +
Sbjct: 368 NIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFIRKYVQELAGVPNKFIHQPEKMT 427
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+ + +ILG++Y PI++H +K + RY F K ++N
Sbjct: 428 VKEQTEFKLILGEDYSFPIVDHQERRKAAIARYEFSKTYASQN 470
>gi|414079662|ref|YP_007001086.1| deoxyribodipyrimidine photolyase [Anabaena sp. 90]
gi|413972941|gb|AFW97029.1| deoxyribodipyrimidine photolyase [Anabaena sp. 90]
Length = 478
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 162/454 (35%), Positives = 245/454 (53%), Gaps = 31/454 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ VF D IL+ I R++++ + L Q S L+I I K
Sbjct: 31 IVGVFCLDPQILE----GDDIAPVRVKYMIGCLQSLQERYQQAGSQLLILQNDPVIAIPK 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L L AV N D EP + IRD + + LKV G +F +Y DQ++ EI + T P
Sbjct: 87 LAAALTAKAVFWNWDVEPYSQIRDLAVSEALKVEGIEFLNYNWDQLLHSPTEIFSGTKTP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN----NIISLNDLGF 177
Y++++ + K WI K K+ PVK+ N ++K +I N+ + DLGF
Sbjct: 147 YTVYTPFWKNWITKSKAK-------PVKTLANLENLTAKEEEIAQQEGTINLPAAEDLGF 199
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
+ L I G A+ L+NF K I Y RN+P+I+GTS LS L+FG I IR
Sbjct: 200 IWD--AELIISPGELAAQEKLDNFAKSAINGYQEQRNFPAIHGTSQLSAALKFGIIGIRT 257
Query: 237 LVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + + + TW +L WR+F+Q +Y +P + N +++ + W++
Sbjct: 258 IWQTTIEALANSNSEEVNASIQTWQKELAWREFFQHAMYHFPALANGAYRDTFKTFPWQN 317
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ + F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ IN +WGE Y
Sbjct: 318 N---ETYFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINPQWGEKY 374
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F KL D DL++NNG WQWSASSG QP RIFNP Q++KFD + +IR+++P+L +
Sbjct: 375 FMQKLIDGDLSANNGGWQWSASSGMDPQP-LRIFNPASQTQKFDAEAEYIRQWIPELRYV 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
+Y+ + K+ G NYP+PI++H
Sbjct: 434 DPEYL------VTGKIPPLD-YYGTNYPQPIVDH 460
>gi|24374895|ref|NP_718938.1| deoxyribodipyrimidine photolyase PhrB [Shewanella oneidensis MR-1]
gi|24349596|gb|AAN56382.1| deoxyribodipyrimidine photolyase PhrB [Shewanella oneidensis MR-1]
Length = 512
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 219/375 (58%), Gaps = 20/375 (5%)
Query: 105 DQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSK---L 161
+ + +LN +G Y +F+ + +KW E V + + L V + L +++ K
Sbjct: 141 EHCLLPPGTVLNLSGDMYRVFTPFSRKWRE-VAAKQAIL-PLGVPAPLGSILSEPKPLFF 198
Query: 162 HKIINNNIISLNDLGFCKSN---------LSSLGIKTGASGAKILLNNFIK-KIKNYNIN 211
I + + + D+ K +SS G AK LLN FI+ K+++Y +
Sbjct: 199 KNIGSTYLAASKDIASSKKGFNQTAPNPLISSEQWAAGEGQAKRLLNQFIQQKVQDYKQD 258
Query: 212 RNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQM 271
R++P+I+GTS +S +L G +S R+ V + + + D TWL++LIWR+FY+
Sbjct: 259 RDFPAIDGTSVISPYLAIGVLSPRQCVAALLQRFPEVIVDDTSPGRTWLNELIWREFYRH 318
Query: 272 ILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMH 330
+L +P++ +F ++ D++LW ++ + FL WC+G TGYP++D+A+ QLN +G+MH
Sbjct: 319 LLVAFPDLSKGNNFNRQADHVLWRNN---QSEFLAWCEGKTGYPIVDAAMRQLNQTGWMH 375
Query: 331 NRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFN 390
NRLRMV ASFL K++ I+W+WGE YF L D DLA+NNG WQWSA GC +QP+FRIFN
Sbjct: 376 NRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFN 435
Query: 391 PIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK-NYPKPILEH 449
P+ QS+KFD G FIRKYLP+L+ +H P + L +A + + +YP I+EH
Sbjct: 436 PMSQSEKFDPDGRFIRKYLPELASWGVTRLHQPNQQKMPSLFEAPLFASQADYPNAIVEH 495
Query: 450 SLSKKNILKRYNFIK 464
+ ++ L +K
Sbjct: 496 NAARARALTVLGVLK 510
>gi|261213071|ref|ZP_05927355.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
gi|260838136|gb|EEX64813.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
Length = 469
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 238/445 (53%), Gaps = 29/445 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FI++ + EL L + L + + A++ + +L KLN V N DYE
Sbjct: 48 QADFIWRRLGELQQELAALNVPLLYQQVADFKAAAEAVSQLASKLNATQVFANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + L G + ++ D+ + + K G+ + +F+ +++ W+ +
Sbjct: 108 QQRDRHTELLLDERGISWATFDDKCLLPPGCVRTKQGEHFKVFTPFKRAWLSLFQP-PII 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
++ P + + SS+ + N+ + F + S + L +F
Sbjct: 167 TKNQPAEPW----TLSSEWASWVWNSAQT-----FDYPRVDSQSWPVDFETIRNQLRDFC 217
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ +++NY+ R++P+ GTS LS +L G +S R+ V +++ + G WLS
Sbjct: 218 RDQVQNYHQQRDFPAREGTSVLSPYLAIGALSARQCVARLYR--ESSMGALSEGAQVWLS 275
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+LIWR+FYQ ++ PN+ ++ F + + W DN + F WC+G TGYP++D+A+
Sbjct: 276 ELIWREFYQHLVAIEPNISKSRDFHEWGSRLEWWDDN---EKFQRWCEGTTGYPIVDAAM 332
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D A+NNG WQW AS+GC
Sbjct: 333 RQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSKLIDGDYAANNGGWQWCASTGC 392
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
QP+FRIFNP+ Q +KFD QG FIR ++P+L +S YIH PW + +
Sbjct: 393 DGQPYFRIFNPVSQGEKFDPQGEFIRHWVPELRSMSAAYIHQPWTYPA--------VNSV 444
Query: 441 NYPKPILEHSLSKKNILKRYNFIKN 465
YP +++H ++ L+ Y K
Sbjct: 445 PYPARLVDHKQEREVTLRLYKTAKG 469
>gi|435850828|ref|YP_007312414.1| deoxyribodipyrimidine photolyase [Methanomethylovorans hollandica
DSM 15978]
gi|433661458|gb|AGB48884.1| deoxyribodipyrimidine photolyase [Methanomethylovorans hollandica
DSM 15978]
Length = 452
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 156/459 (33%), Positives = 248/459 (54%), Gaps = 47/459 (10%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V FIFD +L+ G ++F+ SI +L L L + + + K
Sbjct: 31 VLPCFIFDPRLLE----DGKYSKNALQFMLGSIKDLEAQLNALGGRLYLFSGLPHEVTAK 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + NIDAV++NHDY P ++ RD I G +F + D + + + GK Y
Sbjct: 87 LIGEENIDAVIVNHDYTPFSVHRDGAISAVCAEHGSEFHQFHDATLQVPGSVKTQQGKMY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQ-SYPVK--SYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
+F+ + + ++K ++ PVK ++ N+ V + II D
Sbjct: 147 QVFTQFFRA------ASKLQVEVPVPVKKGAFFNSDVSGAL-------EIIPEFD----- 188
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
N L + G S A +L++ + +Y+ RN PS GT+ LS H RFGT+SIR++
Sbjct: 189 HNNQELFVHGGRSNALEVLSD-LSGFMDYDRLRNIPSRMGTTGLSAHNRFGTVSIREVY- 246
Query: 240 LIFKFIKKHYKTDCIGY-FTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
H D +G T +S+L WRDF+ + +P V ++F++++D + W++D
Sbjct: 247 --------HSFMDELGPDHTLISELYWRDFFIQLAAGHPRVFGRAFREKFDGLQWDNDPV 298
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
F WC+G TG+P++D+ + QL ++GYMHNR+RM+ ASFL+K++ I+W+WGE YFA
Sbjct: 299 ---RFQAWCEGSTGFPIVDAGMRQLATTGYMHNRVRMIVASFLVKDLHIDWRWGERYFAR 355
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
KL D+D NNGNWQW+AS+G + P+FRIFNP +Q +KFD + +I+K++P+L +S++
Sbjct: 356 KLVDYDPCVNNGNWQWAASTGADATPYFRIFNPWLQQQKFDPECEYIKKWVPELRNMSSQ 415
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
IH+ LEK G YP I++H K L
Sbjct: 416 DIHA--------LEKHIPPQGIGYPPVIVDHKAEKDKTL 446
>gi|389686026|ref|ZP_10177349.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis O6]
gi|388550368|gb|EIM13638.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis O6]
Length = 481
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 147/454 (32%), Positives = 253/454 (55%), Gaps = 36/454 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
+++F +++ +LS +L + L+IR A + ++ +++++L ++A+ +N +Y
Sbjct: 47 KVDFWLRNLEQLSSDLTRLNIPLLIRQAPSWEQAPQVLLQLCRELAVEALHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + LK G F SY DQ++F +L K+G + +FS ++K CY
Sbjct: 107 SRRDAAVASLLKSQGVSFHSYLDQLLFRPGSVLTKSGGYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKS--NLSSLGIKTGASGAKILL 198
+ + S L + + + I + + GF +L +L G + A+ L
Sbjct: 158 NR---LHSALPPQLAAPRAQAALRIKADALPRQVEGFPTPGPHLQAL-WPAGETAAQQRL 213
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
+F + ++ +Y R+ P+ GTS LS +L G +S R+ + + + + + G
Sbjct: 214 AHFAETQLVHYQAERDLPAKPGTSQLSPYLAAGVLSPRQCLHAALQNNRGEFASGSPGAV 273
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TW+++L+WR+FY+ IL YP V +++F+ E + + W A W + TG P+I
Sbjct: 274 TWINELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRD---APDELAAWQQARTGLPII 330
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QL +G+MHNRLRM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+
Sbjct: 331 DAAMRQLLETGWMHNRLRMIVAMFLTKNLLIDWRQGERFFMRHLIDGDLAANNGGWQWSS 390
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G S P+FRIFNP+ QS++FD QG FIR +LP+L++L+ K IH+P G+
Sbjct: 391 STGTDSAPYFRIFNPLSQSQRFDSQGTFIRHWLPELAELNEKDIHNP-------AAIGGL 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S+S++ L + KN+ +R
Sbjct: 444 FGVADYPRPMVDLSMSRERALAAF---KNLPSRG 474
>gi|427420013|ref|ZP_18910196.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
gi|425762726|gb|EKV03579.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
Length = 482
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 150/471 (31%), Positives = 243/471 (51%), Gaps = 30/471 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V F D IL+ + R+ ++ + +L Q S+L+I ++I +
Sbjct: 31 VVGFFCLDPGILE----ADDVAPARVAYMLGCVAQLQERYQAVGSELLILKGNPVEQIPQ 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L AV N D EP + RD + L G + + DQ++ ++L GKP
Sbjct: 87 TASTLGAMAVYWNRDVEPYSRQRDNAVAAALTEKGIEMRTKTWDQLLHAPGDVLTGAGKP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNII--SLNDLGFCK 179
Y+++ + + W VK P + L V S + + + I S LGF
Sbjct: 147 YTVYGPFWRNWQNLVK--------LPPAATLQGAVGLSDAERGLVDEIALPSAKALGFTW 198
Query: 180 SNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+ + L ++ G A+ L F K I+ Y+ RN+P++ GTS LS L+FG + +R++
Sbjct: 199 A--APLPLEPGERAARAQLEFFGHKAIEAYDEQRNFPAVTGTSLLSAALKFGAVGMREVW 256
Query: 239 KL-IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + + + TW+ +L WR+FYQ +++ +P + + ++ + + W++D
Sbjct: 257 QTAMTAYDACNSDEGRTNVQTWMKELAWREFYQHVMFFFPELAHGPYRDAWKDFPWDND- 315
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
++ F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ I+W+WGE YF
Sbjct: 316 --EEKFAAWCEGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEKYFM 373
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D DL++NNG WQWSASSG +P RIFNP Q+KKFD +IR++LP++ +
Sbjct: 374 QKLVDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDADADYIRQWLPEIRHVDT 432
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILN 468
+ S K S LE G +Y PI++H + +RY K L
Sbjct: 433 GALVSG-KLSPLDLE------GTDYAAPIVDHKKQQAVFKERYKEQKAKLG 476
>gi|47169691|dbj|BAD18969.1| photolyase [Cochliobolus miyabeanus]
Length = 634
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 158/455 (34%), Positives = 245/455 (53%), Gaps = 29/455 (6%)
Query: 22 IIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHD 77
++ + +F +S+ L L+ D L I K IKK ++++ N+ +V N +
Sbjct: 184 LVSPPKCDFELRSVQLLKQELEELDIPLYIETVHERKNIKKRLVEMALEWNVKSVFCNLE 243
Query: 78 YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
YEP + R++ + + + G D + + TGK Y++++ + + WI +
Sbjct: 244 YEPDELRREERLVRMMLEKGINMDPQHDDCVVPPGSLKTGTGKQYAVYTPWYRAWIAYLH 303
Query: 138 SNKCYL--QSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK------T 189
++ L +S P K N K K+ ++ + L D CKS + +
Sbjct: 304 AHPHLLNERSMPEK---NPTGFREKFTKLFDSRVPDLPD---CKSLTAEEKERFHHLWPA 357
Query: 190 GASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G + A L F+ +K+ Y RN+P++N T +S H GT++ R V++ + I
Sbjct: 358 GEAAAIDRLERFLTEKVIKYKDTRNFPALNSTGRISAHHAAGTLAARTSVRMA-RDINSV 416
Query: 249 YKTDC--IGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLN 305
K D G W+ ++ WRDFY+ +L +P V +NK FK EY NI WE Y +F
Sbjct: 417 KKLDGGKEGIKGWIGEVAWRDFYRHVLVHWPYVCMNKPFKYEYTNIEWE---YNDAHFEA 473
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W +G TGYP++D+A+ L +GYMHNRLRM+TASFL K++ ++W+ GE YF L D D
Sbjct: 474 WTQGRTGYPIVDAAMRCLKHTGYMHNRLRMITASFLAKHLLLDWRLGEQYFITHLIDGDF 533
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASNNG W +SAS+G QP+FRIFNP QS+KFD QG FIR ++ +L + IH+P++
Sbjct: 534 ASNNGGWGFSASTGVDPQPYFRIFNPWTQSEKFDEQGEFIRLWVKELEDVQGAAIHNPYQ 593
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
A K E A I YP+PI+EH +++ L RY
Sbjct: 594 A---KGEAAKIAKKNGYPEPIVEHKFARERCLARY 625
>gi|424914362|ref|ZP_18337726.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850538|gb|EJB03059.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 507
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 239/443 (53%), Gaps = 26/443 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L L++ A + ++ ++ K +AV N Y+P I D I
Sbjct: 82 WLHHSLEALDRSLHERQGGLVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHI 141
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K+EL+ + S+ Q++ E + ++ +G PY +++ + + +E + L++ P K
Sbjct: 142 KQELEKQAIEARSFGGQLLHEPSRLMTGSGTPYRVYTPFWRA-LEGAGEAEPPLEA-PAK 199
Query: 150 SYL------NNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK 203
L + + S KL + DL G GA+ L+ F++
Sbjct: 200 LRLAAQRPASETLKSWKLLPTKPDWAKDFTDL-----------WTPGEQGARERLSAFVE 248
Query: 204 -KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
++K Y NR+YP+ TS LS HL G IS ++ + D + + +
Sbjct: 249 DELKGYKENRDYPAKPATSMLSPHLALGEISPARIWDATRGLSNRVPAADIVHF---RKE 305
Query: 263 LIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
+ WR+F +L+ +P + ++++ +D W +D+ +F W +G TGYP++D+ + Q
Sbjct: 306 IAWREFSYHLLFHFPRLASENWNDRFDGFKWRNDD---GDFEAWRRGMTGYPIVDAGMRQ 362
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
L G+MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D A+N +WQW A SG +
Sbjct: 363 LWRHGWMHNRVRMIVASFLIKDLMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADA 422
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNY 442
PFFRIFNP++Q + FD G ++R ++P+L +L KYIH P++A L++AGIILG+ Y
Sbjct: 423 SPFFRIFNPMLQGETFDPDGDYVRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTY 482
Query: 443 PKPILEHSLSKKNILKRYNFIKN 465
PKPI++H+ ++ L Y K+
Sbjct: 483 PKPIVDHASARDRALAAYKATKD 505
>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 480
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 245/468 (52%), Gaps = 27/468 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D IL+ I R+ ++ S+ EL N Q+ S+L+I + I
Sbjct: 32 VVGVFCLDPGILN----GDDIAPARVSYMIGSLAELQENYQSAGSELLILKGKPEEAIPN 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFS-YKDQVIFEKNEILNKTGKP 121
L L AV N D EP A RD + LK + + Y DQ++ + + G+P
Sbjct: 88 LASALGAAAVYWNRDVEPYARERDPNVASALKDRDIESSTQYWDQLLLPPDALKTGAGEP 147
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKL-HKIINNNIISLNDLGFCKS 180
Y +++ + +KWI + K ++ + L+ H L +K N ++ + LG+
Sbjct: 148 YKVYTPFWRKWIRQEKQPPA--STFAAATGLS--PHEKSLANKAGNIDLPTAKALGYEWE 203
Query: 181 NLSSLGIKTGASGAKILLNNFI---KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
N L ++ G + A L F + I Y+ R+YPSI GTS LS L+FGT+ IR +
Sbjct: 204 N--ELLLQPGEAAALAQLEKFCDDRRVIAEYDQQRDYPSIAGTSTLSAALKFGTLGIRTV 261
Query: 238 VKLIF-KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ + + + TW +L WR+FYQ ++Y +PN+ +++ + W++D
Sbjct: 262 WEAASDAYSRARSEETHRNIRTWQQELAWREFYQSVMYTFPNLAEGPYREPLKDFPWDND 321
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
+ F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ I+W+WGE YF
Sbjct: 322 ---EDLFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLIIDWRWGEKYF 378
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
L D DL++NNG WQWSASSG +P RIFNP Q+KK+D + +IR++LP++ L
Sbjct: 379 MQHLFDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKYDPEAEYIREWLPEIRHLD 437
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ S K S LE G YP +++H + +RY K
Sbjct: 438 TGALVSG-KIDSNDLE------GTGYPCKVVDHKEQQAIFKERYKAQK 478
>gi|385803847|ref|YP_005840247.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi C23]
gi|339729339|emb|CCC40585.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi C23]
Length = 478
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 247/463 (53%), Gaps = 28/463 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VFIFD N L+ G + R++++ +SI EL ++ DSDL+I + + +L
Sbjct: 39 VFIFDDNALE---HDG---NARVQYMLESIAELRSWYRDRDSDLLIARGDPASILPELAS 92
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
++D V+ N +Y A RD+ + L S +D + FE I G+PYS++
Sbjct: 93 THDVDRVVWNREYSGFAQSRDQQVADALTEHDIAHCSVRDSIFFEPGSITTNKGEPYSVY 152
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+++ KKW ++ K+ P+ + ++ + I +++ +++ LGF +
Sbjct: 153 TYFWKKWRDREKNA-------PIDAPDADMFVPDEG---IGDSLPTIDSLGFEEPTADIQ 202
Query: 186 GIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
G + A+ L++F I Y+ +R+YPS + S LS L FGTI IR +
Sbjct: 203 --PAGTNAARNRLSDFCADGIYRYDDDRDYPSRDAVSRLSADLSFGTIGIRDVYAATVAA 260
Query: 245 IKKHYKTDCIGYFT--WLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ TD + SQL WR+FY +LY P VV +++K + I W D A
Sbjct: 261 AEVDGITDAEAESVEEFQSQLAWREFYTHVLYFNPEVVTENYKSYENGIQWRDDPAA--- 317
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
W G TGYP++D+ + QL S YMHNRLRM+ ASFL K++ I+W+ G +F L D
Sbjct: 318 LQAWKDGETGYPIVDAGMRQLKSEAYMHNRLRMIVASFLTKDLLIDWREGYGHFRQYLAD 377
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
++A+NNG WQW+AS+G +QP+FRIFNP+ Q +++D +I++Y+P+L ++ IH
Sbjct: 378 HNIANNNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKQYVPELREVPADTIHE 437
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
W S E+A L +YP PI++HS ++ L+ + +
Sbjct: 438 -WHELS-PTERA--RLDTDYPAPIVDHSKQREKALEMFETARG 476
>gi|410616915|ref|ZP_11327899.1| deoxyribodipyrimidine photo-lyase [Glaciecola polaris LMG 21857]
gi|410163538|dbj|GAC32037.1| deoxyribodipyrimidine photo-lyase [Glaciecola polaris LMG 21857]
Length = 437
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 155/450 (34%), Positives = 250/450 (55%), Gaps = 30/450 (6%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
+R+ F+ K +++ +I LQ + S Y+ ++I +L + +I V N +YE R
Sbjct: 11 QRLAFLHKDLLKRNITLQIFQS---TEYSALPEKISQLCSEEDITHVYSNAEYEWDERQR 67
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
DK +K LK I F + D + + +I N +PY +F+ Y K+W++ V L S
Sbjct: 68 DKAVKSTLKEIDVSFALFHDTCLVKPTDIFNLKNEPYKVFTPYFKRWLDAVSRQ---LPS 124
Query: 146 YPVKSYLNNLVHSSKLHKI---INNNIISLNDLGFCKSNLSSLGIKTGASGAKIL--LNN 200
P + N S+ K ++ ++ ND K + + + A+ I+ +N
Sbjct: 125 VPDR----NKARSTGFIKPKVEVSAEDLTKNDAN--KGTDNDISLSWPATDPVIIKKMNA 178
Query: 201 FIKKI-KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
FI ++ +Y NR+ PSI+GTS +S +L G +S ++ + + + + T G TW
Sbjct: 179 FIIELAPDYPKNRDIPSIDGTSKISPYLSIGALSPKQCLYHVLQAHGEEALTPEHGAHTW 238
Query: 260 LSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+ ++ WRDFY+ ++Y +P+V F+K Y + WE++ + +F W G TGYP++D+
Sbjct: 239 VKEIAWRDFYRYVMYHFPHVSRGLPFQKHYQHFKWETN---QAHFSAWRDGKTGYPIVDA 295
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+I L +G+MHNRLRM+ ASF K++ + W+W E YF ++L D D ASNNG WQWSAS
Sbjct: 296 AMIALKETGWMHNRLRMIVASFYCKHLMLPWQWAEKYFMSQLIDGDYASNNGGWQWSASV 355
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G + P+FRIFNP QS++FD QG+FI+ +LPQL LS+K IH P + S ++K G L
Sbjct: 356 GTDAAPYFRIFNPTTQSQRFDPQGVFIKTWLPQLHNLSHKQIHEP--SKSCDVQKLGYYL 413
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKNILN 468
PI++H S +++ LN
Sbjct: 414 ------PIVDHKASVARTKQQFKGFLAALN 437
>gi|422759394|ref|ZP_16813156.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412229|gb|EFY03137.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 474
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 243/470 (51%), Gaps = 45/470 (9%)
Query: 5 CVFIFDKNILD--PLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
CVF F++ L P R+Q + + F + + E I+L DLI + ++++ +
Sbjct: 31 CVFQFNQKQLSQPPSRNQSAVVASVLAFK-EELKERGIDLYVMHGDLITCFEQLAQQLDQ 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
V N+D RD+ + + +Y+D + EI N++G+ Y
Sbjct: 90 WT------DVYFNYDESGFGRRRDQQAAQWFRAKKINIHAYQDHYLHGSQEIKNQSGEYY 143
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPV------KSYLNNLVHSSKLHKIINNNIISLNDLG 176
+F+ Y + W +C + PV ++L+ + L I + ND+
Sbjct: 144 KVFTPYYRVW-------QCLPKETPVVVDLSRGNWLSLKTPQATLELIETLKDTTFNDVM 196
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
K AK LN+F+ ++ +Y+ R++PS GTS+LS +LR G +SIR
Sbjct: 197 TVKE-------------AKERLNHFVDNQLADYDTTRDFPSRCGTSFLSPYLRLGMVSIR 243
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + + G +L +L WRDFY M+ PN + ++ + ++ W+
Sbjct: 244 TVYQAVSQ------APASSGQAVFLKELAWRDFYHMVYVANPNQKKLAIQEAFRHLEWDE 297
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ F W +G TGYP+ID+A+ QL ++G+MHNRLRMV ASFL K++ I+W+ GE Y
Sbjct: 298 N---PATFKAWKEGQTGYPIIDAAMKQLRATGWMHNRLRMVVASFLTKDLQIDWRLGEAY 354
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F +L D+D ASN G WQW+AS G + P+FRIFNP+ Q K+FD G FIR YLP L +
Sbjct: 355 FQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGDFIRSYLPSLVSV 414
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
KY++ PWK E I+GK+YP P+++H+ +K + RY + K
Sbjct: 415 PQKYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQRKRAIARYEWAKE 464
>gi|402699638|ref|ZP_10847617.1| deoxyribodipyrimidine photolyase [Pseudomonas fragi A22]
Length = 481
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 249/451 (55%), Gaps = 30/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+++F +++ LS +L+ + L+IR A A + +++ +L I+ V +N +Y
Sbjct: 47 KVDFWLRNLSVLSDSLEQLNIPLLIRSAPAWDQAPAVLVELCQQLGIEDVHVNDEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L G F + DQ++F+ +L KTG + +FS ++K E++ +
Sbjct: 107 TRRDQAVARALDAKGIGFHRHLDQLLFQPGSVLTKTGTYFQVFSQFRKVCYERLHTGLPP 166
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
+ + P + I + I+ + GF + + + G A+ L F
Sbjct: 167 IVATP----------RPQAQLTIARDAIAQSVSGFAPPDETLRALWPAGEDEARQRLARF 216
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
++I Y R+ P+ GTS LS +L G IS R+ + +++ +G TW+
Sbjct: 217 ADEQIHYYKEERDLPAKPGTSQLSPYLAAGVISPRQCLHAALLSNNGEFESGSVGCATWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
S+LIWR+FY+ IL YP V +++F+ + + + W A + W +G TG P+ID+A
Sbjct: 277 SELIWREFYKHILVGYPRVSRHRAFRADTEFLPWRD---APQELAAWKEGRTGIPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
I QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 334 IRQLLATGWMHNRLRMVVAMFLTKNLLIDWREGERFFMQHLIDGDLAANNGGWQWSSSTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS++FD +G FI+ +LP+L+ L+ K IH+P A G+
Sbjct: 394 TDSVPYFRIFNPLSQSERFDPEGRFIKHWLPELATLNKKEIHNPAIA-------GGLFGV 446
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+PI++ S++ L + KN+ +R
Sbjct: 447 ADYPRPIVDLKHSRERALSAF---KNLPSRQ 474
>gi|375133173|ref|YP_005049581.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio furnissii NCTC 11218]
gi|315182348|gb|ADT89261.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio furnissii NCTC 11218]
Length = 475
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 235/445 (52%), Gaps = 29/445 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKE----IKKLVIKLNIDAVMINHDYEPQA 82
+ +FI + + L L + L+ R + E + ++ L+ + V+ N DYE
Sbjct: 48 QADFIHRRLFALQTELAALNVPLLYREVVTFTEAVDAVTEVASALHANQVLANRDYELNE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + L G ++ S+ D+ + + NK G + +F+ +++ W+
Sbjct: 108 QQRDAQAAERLHQQGIEWQSFDDKCVMPPGSVRNKQGDYFKVFTPFKRAWL--------- 158
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
Q P + + L + + + ++ F +SS + L F
Sbjct: 159 TQFSPPRIQASRAAKPWSLPEALQS-LLWCESQPFTHPRVSSDAWPVDFDTIRGRLRAFC 217
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ ++ +Y R++P+ +GTS LS +L G +S R+ + ++ +D G TWLS
Sbjct: 218 QEQLDDYKQQRDFPAQDGTSSLSPYLAIGALSPRQCIARVYAESAMGALSD--GAQTWLS 275
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+LIWR+FYQ +L P + +K F + W +D + F WC+G TGYP++D+A+
Sbjct: 276 ELIWREFYQHLLTFEPKLSKSKDFLAWGARLTWWTD---EAKFARWCEGNTGYPIVDAAM 332
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF L D D A+NNG WQW AS+GC
Sbjct: 333 RQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGC 392
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
QP+FRIFNP Q +KFD QG FIR+++P+L+ + +IH+P S++ G +
Sbjct: 393 DGQPYFRIFNPTTQGEKFDPQGRFIRQWVPELATVPEAHIHAP---SNW-----GGVNSL 444
Query: 441 NYPKPILEHSLSKKNILKRYNFIKN 465
YP+PI++H ++ L+ Y K+
Sbjct: 445 LYPQPIVDHKAEREVTLRLYKEAKD 469
>gi|343509312|ref|ZP_08746596.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
gi|342805079|gb|EGU40359.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
Length = 483
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/449 (31%), Positives = 247/449 (55%), Gaps = 25/449 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL +L + L + Y + +++ ++ + V+ N +YE
Sbjct: 48 QADLIYRRLFELQQDLAQLNIPLLYMEVENYQQSVQQVSDCALRYGAERVVFNREYEVNE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN-KC 141
RD L+ + + + D+ + +LNK G+ + +F+ +++ ++ ++ N
Sbjct: 108 QDRDDLLHSHSAI---EIQGFDDKCLLPPGSVLNKQGQYFKVFTPFKRAYLARLTENLPP 164
Query: 142 YLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+++ V+ N++ K ++S + F SS + + LL F
Sbjct: 165 VVKTTAVRDDSTNILDIKAEPKESYPALLSPQSV-FSYPRESSERYVVNSKAIRQLLREF 223
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI---GYF 257
+++ NY+ +R+ P++N TS LS +L G +S+R+ V + + H T + G
Sbjct: 224 CHERVDNYHNDRDKPALNATSMLSPYLAIGALSVRQCVARVLYSAQAHQITSPLLGEGIH 283
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TW+S+L+WRDFYQ +L+ P + + F + + W +K++ W KG TGYP++
Sbjct: 284 TWISELVWRDFYQHLLHFEPKLCKGRHFVTWTEKLHWPG---SKQHLAAWQKGMTGYPIV 340
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLN +G+MHNRLRMV ASFL K++ ++W GE YF KL D D A+NNG WQWSA
Sbjct: 341 DAAMRQLNQTGWMHNRLRMVVASFLTKDLHLHWHHGERYFMQKLVDGDYAANNGGWQWSA 400
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+GC +QP+FRIFNP Q ++FD G FIR ++P+LS + NK+IH PW+ +
Sbjct: 401 STGCDAQPYFRIFNPTAQGERFDPDGDFIRHWIPELSAVPNKFIHQPWRWEN-------- 452
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIKN 465
++ +YPKP+++H ++ L+ + K+
Sbjct: 453 VISLSYPKPMVDHKSEREITLRLFQDAKD 481
>gi|46107828|ref|XP_380973.1| hypothetical protein FG00797.1 [Gibberella zeae PH-1]
Length = 635
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 164/447 (36%), Positives = 235/447 (52%), Gaps = 25/447 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
RI+F+ +++ + +L D L + K + +++L + N +YE
Sbjct: 193 RIDFMLRTLSVIKEDLAKLDIPLYVETVEKRKHLPDRILELMDEWGASHLYANMEYEVDE 252
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + K+ G F D I E+ GK Y++++ + K WI + N
Sbjct: 253 LRREAAMIKDFAENGKAFEVVHDTCIVPPGELHTGAGKQYAVYTPWFKTWIAHIHENLDL 312
Query: 143 LQSY--PVKSYLNNLVHSSKLHKIINNNIISL---NDLG-FCKSNLSSLGIKTGASGAKI 196
L+ Y P K N K K+ N I LG K L SL G AK
Sbjct: 313 LELYEPPEK---NPDSARKKFKKLFNAEIPEAPKSKRLGDEEKERLRSL-WPCGEHEAKK 368
Query: 197 LLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK-KHYKTDCI 254
L+ F + +I NY+ RN P+ TS LS+HL GTIS R V+ K K
Sbjct: 369 RLDKFCEERIGNYHEKRNIPADAATSSLSVHLASGTISARTCVRTARDRNKTKKLNGGND 428
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
G TW+S++ WRDFY+ +L +P V +NK FK EY NI W DN +F WC+G TG+
Sbjct: 429 GIQTWISEVAWRDFYKHVLVNWPYVCMNKPFKPEYSNISWSYDN---DHFAAWCEGRTGF 485
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
P++D+A+ Q+N+ GYMHNR RM+ ASFL K++ ++W+ GE YF L D D ASNNG W
Sbjct: 486 PIVDAAMRQMNTIGYMHNRCRMIVASFLAKDLLLDWRKGEKYFMEHLVDGDFASNNGGWG 545
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEK 433
+SAS G QP+FRIFNP++QS+KFD G +IRK++P+L L NK IH P+ + K
Sbjct: 546 FSASVGVDPQPYFRIFNPLLQSEKFDPDGDYIRKWVPELKDLDNKAIHDPYNRKAGPQAK 605
Query: 434 AGIILGKNYPKPILEHSLSKKNILKRY 460
K YP+PI+ H ++ L Y
Sbjct: 606 K-----KGYPEPIVTHKDCRERALAAY 627
>gi|445413259|ref|ZP_21433603.1| putative deoxyribodipyrimidine photo-lyase [Acinetobacter sp.
WC-743]
gi|444766053|gb|ELW90330.1| putative deoxyribodipyrimidine photo-lyase [Acinetobacter sp.
WC-743]
Length = 476
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 249/450 (55%), Gaps = 35/450 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+F + I L L + LII+ + +KE+ +L KLNI+ + N +
Sbjct: 49 KIDFYLRQIEALQHALTKLNIPLIIQTIPLWENIAKEVTQLCQKLNIENIHANIECGVNE 108
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEK--VKSNK 140
+ RD +++ L G Y D+ +F I NK+ +PY +F ++K E+ + +
Sbjct: 109 LNRDFDVQRRLNKNGHDLILYHDRTLFPVGSIRNKSNQPYQVFGAFKKYCYEQLSISVPQ 168
Query: 141 CY----LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF-CKSNLSSLGIKTGASGAK 195
CY +QS + Y ++L N + ++ LGF C + + G + A
Sbjct: 169 CYPAPEIQSLDMSIYKDDL-----------NPLPTIKTLGFECIEKNTKTQWQVGEAHAW 217
Query: 196 ILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI 254
LL+ F+ I+NY ++R++P++ TS LS +L G ISIR+ + +F+ + + I
Sbjct: 218 HLLDEFLDNHIENYQVHRDFPNLEATSQLSAYLNIGIISIRQCLNALFRAQHGQFTIENI 277
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
G TW+ +L+WR+FYQ IL+ +P V FK+ + + W A ++ + W G TG
Sbjct: 278 GQQTWMDELLWREFYQHILFDFPRVSKHLPFKETTEKLAWRD---APEDLIAWQMGQTGI 334
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
P++D+ + QL +G+MHNR+RM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQ
Sbjct: 335 PIVDAGMRQLLQTGWMHNRVRMIVAMFLSKNLLIDWRLGEQWFMQHLIDGDLAANNGGWQ 394
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEK 433
W AS+G S P+FRIFNP+ QS+KFD +G +IRK++P+L+ L K IH P+ +S
Sbjct: 395 WCASTGTDSVPYFRIFNPVSQSQKFDAEGEYIRKWVPELADLDAKTIHEPYAKNSE---- 450
Query: 434 AGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+ NYP+PI++ S+ ++ + I
Sbjct: 451 ----IQLNYPQPIVDLKQSRIRAIEAFKQI 476
>gi|16802631|ref|NP_464116.1| hypothetical protein lmo0588 [Listeria monocytogenes EGD-e]
gi|386049515|ref|YP_005967506.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
R2-561]
gi|404283027|ref|YP_006683924.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2372]
gi|405757582|ref|YP_006686858.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2479]
gi|16409964|emb|CAC98667.1| lmo0588 [Listeria monocytogenes EGD-e]
gi|346423361|gb|AEO24886.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
R2-561]
gi|404232529|emb|CBY53932.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2372]
gi|404235464|emb|CBY56866.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2479]
Length = 467
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 222/397 (55%), Gaps = 24/397 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ K + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAERDEAAKTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K P K L K I N+ + F + + +
Sbjct: 148 KKWREEIKET-------PFKVTL-------KADNIRKENLFPKYEEQFAEMTCDLPILDS 193
Query: 190 GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L NFIK + +Y+ R++P ++ TS+LS +LR G IS+R I++ ++++
Sbjct: 194 GEKTANTRLANFIKHDVADYDKARDFPELDKTSHLSRYLRTGEISVR----TIWQALQEN 249
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ F +L WRDFY MI +PN N+ ++ Y I WE++ ++ F W +
Sbjct: 250 EATEGRAIFE--KELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKAWQE 304
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRMVTASFL K++ I+W++GE YF L D+D ASN
Sbjct: 305 GKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLLIDWRFGEKYFQQMLIDYDPASN 364
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +K+IH P K S
Sbjct: 365 IGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIRKYVKELANLPDKFIHQPEKMSE 424
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ G++LGK+YP P+++H +K + RY F K
Sbjct: 425 IEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKE 461
>gi|217965318|ref|YP_002350996.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
gi|386007316|ref|YP_005925594.1| phr [Listeria monocytogenes L99]
gi|386025906|ref|YP_005946682.1| putative deoxyribodipyrimidine photolyase [Listeria monocytogenes
M7]
gi|217334588|gb|ACK40382.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
gi|307570126|emb|CAR83305.1| phr [Listeria monocytogenes L99]
gi|336022487|gb|AEH91624.1| putative deoxyribodipyrimidine photolyase [Listeria monocytogenes
M7]
Length = 467
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 222/397 (55%), Gaps = 24/397 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + S+ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAKRDEAAQAFFDEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K P K L K I ++ + F + + +
Sbjct: 148 KKWREEIKET-------PFKVTL-------KPENIRKESLFPKYEEQFAEMTCDLPILDS 193
Query: 190 GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L NFIK I +Y+ R++P ++ TS+LS +LR G ISIR +++ +++
Sbjct: 194 GERAANTRLANFIKHDIADYDKARDFPELDKTSHLSRYLRTGEISIR----TVWQALQET 249
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ G T+ +L WRDFY MI +PN N+ ++ Y I WE++ ++ F W +
Sbjct: 250 KATE--GRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKAWQE 304
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE YF L D+D ASN
Sbjct: 305 GKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASN 364
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP QS+KFD FIRKY+ +L+ L +KYIH P K S
Sbjct: 365 IGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIRKYVKELANLPDKYIHQPEKMSE 424
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ G++LGK+YP P+++H +K + RY F K
Sbjct: 425 TEQKEYGLVLGKDYPFPLIDHKERRKLAIARYEFSKE 461
>gi|346971961|gb|EGY15413.1| deoxyribodipyrimidine photo-lyase [Verticillium dahliae VdLs.17]
Length = 589
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 155/450 (34%), Positives = 239/450 (53%), Gaps = 31/450 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++F +++ L +L D L I ++I +++L + N +YE
Sbjct: 146 RVDFTLRTLEVLKHDLAKLDIPLHIETVDKRRQIPDRIVELMGEWGATHLFANMEYEVDE 205
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + + G F + D + ++ TGK Y++++ + + W+ V N
Sbjct: 206 LRREAKLVRTFADKGMSFEAVHDTCVVPPGQLQTGTGKQYAVYTPWYRSWMRHVHENPDR 265
Query: 143 LQ--SYP------VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGA 194
L+ +P K NL +S++ + I N +S + K L G A
Sbjct: 266 LELFDHPNKNPSSAKERFGNLF-ASEIPEEIPNKTLSAEE----KKRFRGL-FPAGEHAA 319
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK-KHYKTD 252
+ LN F I +Y RN P NGTS LS+HL GTIS R V+ K K
Sbjct: 320 RERLNKFCDSSISSYADRRNIPGDNGTSSLSMHLASGTISSRTCVRTARDRNKTKKLDGG 379
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
G TW+S++ WRDFY+ +L +P V +NK FK EY NI W +Y K +F WC+G T
Sbjct: 380 NGGIQTWISEVAWRDFYKHVLVHWPYVCMNKPFKPEYANIEW---SYEKDDFKAWCEGKT 436
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
G+P++D+A+ Q+ G+MHNR RM+ ASFL K++ I+W+ GE +F L D D ASNNG
Sbjct: 437 GFPIVDAAMRQMIHVGWMHNRCRMIVASFLCKDLLIDWRMGERFFMEHLVDGDFASNNGG 496
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW-KASSYK 430
W +SAS G QP+FRIFNP++QS+KFD G +IRK++P+L+ + K IH P+ + + +
Sbjct: 497 WGFSASVGVDPQPYFRIFNPLLQSEKFDPDGEYIRKWVPELAGVKGKAIHDPYGRGAGPQ 556
Query: 431 LEKAGIILGKNYPKPILEHSLSKKNILKRY 460
++K G YP+PI+ H ++ L Y
Sbjct: 557 VKKKG------YPEPIVAHKDVRERALTEY 580
>gi|448639842|ref|ZP_21676990.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
gi|445762369|gb|EMA13590.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
Length = 465
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 238/466 (51%), Gaps = 32/466 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD +LD R+ F+ ++ L ++ SDL++ + + +
Sbjct: 27 VVPVFIFDTAVLDHAGPP------RVAFMLDALDSLREWYRDKGSDLVVAEGDPTSVLPE 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + V DY A RD +++ L + ++ V+ E EI G PY
Sbjct: 81 LAAQHGAEKVTWGKDYSGLARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+++ +KW ++ K+ S + L + + + +L DLGF +
Sbjct: 141 SVFTYFGRKWHDREKAGPYDPPS------------ADTLADVDGDALPTLADLGFEEPEA 188
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
G A+ LL++F+ + + Y R++P+ TS LS HL+FGTI IR++
Sbjct: 189 DVPA--AGTEEARALLDDFLDENVYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRT 246
Query: 242 --FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
K + D + F SQL WR+FY +L+ +P+VV+ ++K + I WE+D
Sbjct: 247 QAAKEGTGGDRRDSVREFQ--SQLAWREFYTQVLFAHPHVVSSNYKSYENPIEWEND--- 301
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
++ W G TGYP++D+ + QL YMHNR+RM+ ASFL K++ I+W+ G +F K
Sbjct: 302 EELLQAWKDGDTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLIDWRHGYEWFREK 361
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D D A++NG WQW+AS+G +QP+FRIFNP+ Q + +D +I++Y+P+L + +
Sbjct: 362 LVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPNAEYIKEYVPELRDAAPEI 421
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH W S + YP P+++HS ++ L + +
Sbjct: 422 IHD-WNDCSLTQRRNA---APEYPDPVVDHSERREQALAMFERARG 463
>gi|332529962|ref|ZP_08405912.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
gi|332040435|gb|EGI76811.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
Length = 501
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/443 (32%), Positives = 241/443 (54%), Gaps = 30/443 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDL-IIRYAIASK---EIKKLVIKLNIDAVMINHDY 78
I R++F + + L+ L + L ++R A S+ + +L I N +Y
Sbjct: 45 IAPSRLDFARRHLHLLTTELARHHIALQVLRVAQVSEIAPALARLARDHGISHCFFNAEY 104
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
+ RD+ + + L+ G D+V+ ++ N+ G PY +F+ Y++KW++
Sbjct: 105 PLDELNRDQQVNQLLRAQGVTVKRCHDRVVIPPGKVRNEAGTPYKVFTPYKRKWLQLAS- 163
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK--TGASGAKI 196
L PV++ H + L + + ++ L F L L G + A+
Sbjct: 164 ---LLPLRPVEAP----AHQAAL-PCPSASAQDIDHL-FEGQELRDLSTPWPAGEAVARA 214
Query: 197 LLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIG 255
L F+ + + +Y R+ P++ GTS LS +L G +S R+ + + + + G
Sbjct: 215 RLQRFVAQDLDHYQTQRDLPAVAGTSGLSPYLAIGALSPRQALAAVLSRTGGDWNANA-G 273
Query: 256 YFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314
TW+S+LIWR+FYQ ++ YP V ++++ + + W A ++F W +G TG P
Sbjct: 274 VSTWISELIWREFYQHLVVDYPQVCMHRAMQVHTEAFPWRQ---APEDFALWRQGRTGIP 330
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
+ID+A+ QLN++G+MHNRLRM+ A FL KN+ I+W+WGE YF +L D D A+NNG WQW
Sbjct: 331 IIDAAMRQLNATGWMHNRLRMLVAMFLTKNLQIDWRWGERYFMEQLIDGDFAANNGGWQW 390
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
SAS+G + P+FRIFNPI QS++FD +G FIR ++P+L+ LS+K IH+P L +
Sbjct: 391 SASTGTDAAPYFRIFNPITQSQRFDPRGQFIRLWVPELAGLSDKAIHAP------HLAPS 444
Query: 435 GIILGKNYPKPILEHSLSKKNIL 457
G G YP P+++ S+K +
Sbjct: 445 GPPPG--YPAPMVDLGASRKATI 465
>gi|344211748|ref|YP_004796068.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
gi|343783103|gb|AEM57080.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
Length = 465
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/466 (30%), Positives = 241/466 (51%), Gaps = 32/466 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD+++LD R+ F+ ++ L ++ SDL++ + +
Sbjct: 27 VVPVFVFDRDVLDHAGPP------RVAFMLDALDSLREWYRDRGSDLVVAEGDPTAVLPD 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + V DY A RD +++ L + ++ V+ E EI G PY
Sbjct: 81 LAAEYGAEKVTWGKDYSGLARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+++ +KW ++ K+ + P + +L + + + +L DLGF +
Sbjct: 141 SVFTYFGRKWHDREKATP--YEPPP----------ADELADVDGDALPTLADLGFDEPEA 188
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
G A+ LL++F+ + + Y R++P+ TS LS HL+FGTI IR++
Sbjct: 189 DVPA--AGTDEARALLDDFLAENVYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRT 246
Query: 242 --FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
K + + + F SQL WR+FY +L+ +P+VV+ ++K + I WE+D
Sbjct: 247 EDAKEGTGGDRRESVREFQ--SQLAWREFYTQVLFAHPHVVSSNYKSYENPIEWEND--- 301
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
++ W G TGYP++D+ + QL YMHNR+RM+ ASFL K++ I+W+ G +F K
Sbjct: 302 EELLQAWKDGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLIDWRHGYEWFREK 361
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D D A++NG WQW+AS+G +QP+FRIFNP+ Q + +D +I++Y+P+L + +
Sbjct: 362 LVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPDAEYIKEYVPELRDAAPEI 421
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH W S + YP P+++HS ++ L + +
Sbjct: 422 IHD-WNDCSLTQRRNA---APEYPDPVVKHSDRREQALAMFERARG 463
>gi|386042915|ref|YP_005961720.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes 10403S]
gi|404409820|ref|YP_006695408.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC5850]
gi|345536149|gb|AEO05589.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes 10403S]
gi|404229646|emb|CBY51050.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC5850]
Length = 467
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 221/397 (55%), Gaps = 24/397 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ K + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNRDETGYGAERDEAAKTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K P K L K I N+ + F + + +
Sbjct: 148 KKWREEIKET-------PFKVTL-------KADNIRKENLFPKYEEQFAEMTCDLPILDS 193
Query: 190 GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L NFIK + +Y+ R++P ++ TS+LS +LR G IS+R I++ ++++
Sbjct: 194 GEKTANTRLANFIKHDVADYDKARDFPELDKTSHLSRYLRTGEISVR----TIWQALQEN 249
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ F +L WRDFY MI +PN N+ ++ Y I WE++ ++ F W
Sbjct: 250 EATEGRAIFE--KELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKAWQD 304
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRMVTASFL K++ I+W++GE YF L D+D ASN
Sbjct: 305 GKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLLIDWRFGEKYFQQMLIDYDSASN 364
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP QS+KFD G FIR+Y+ +L+ L +K+IH P K S
Sbjct: 365 IGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIREYVKELANLPDKFIHQPEKMSE 424
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ G++LGK+YP PI++H +K + RY F K
Sbjct: 425 IEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKE 461
>gi|358010836|ref|ZP_09142646.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. P8-3-8]
Length = 471
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 155/409 (37%), Positives = 228/409 (55%), Gaps = 22/409 (5%)
Query: 57 SKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN 116
+KEI +L +L I+ V N + + RD ++K L Y D+ IF I N
Sbjct: 83 AKEINQLCHELEIENVHANIEIGVNELDRDFQVQKTLNQSARDLILYHDRSIFPIGSIRN 142
Query: 117 KTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
K+ +PY +F ++K E++ + Q YPV + + KL I+++I S+ +LG
Sbjct: 143 KSNQPYQVFGAFKKYCYEQLSIS--IPQPYPVPTPQQTI----KLE--ISDSIPSVQNLG 194
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
F K + G A LL++FI+ KI NY R++P+I GTS LS +L G +SIR
Sbjct: 195 F-KLEYIKQQWQVGEQCALELLDDFIENKIFNYQTERDFPNIEGTSQLSAYLNIGILSIR 253
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWE 294
+ +F+ + H+ D IG TWL +L+WR+FYQ IL+ +P V FK I W
Sbjct: 254 QCFNAVFRAQQGHFYIDNIGQQTWLDELLWREFYQHILFDFPRVSKHLPFKAATQKIQWR 313
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
A + W G TG P++D+ + QL +G+MHNR+RM+ A FL KN+ I+W+ GE
Sbjct: 314 D---APDDLTAWQMGQTGIPIVDAGMRQLLQTGWMHNRVRMIVAMFLTKNLLIDWRLGEQ 370
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
+F L D DLA+NNG WQW AS+G S P+FRIFNPI QS+KFD QG +IR++LP+L+
Sbjct: 371 WFMQHLIDGDLAANNGGWQWCASTGTDSVPYFRIFNPISQSQKFDAQGDYIRRWLPELAH 430
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
L +K IH P+ L YPK I++ S+ ++ + I
Sbjct: 431 LDDKMIHEPYAKDPN--------LDLKYPKAIVDLKQSRIRAIEAFKTI 471
>gi|420345922|ref|ZP_14847350.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 965-58]
gi|391275301|gb|EIQ34091.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 965-58]
Length = 472
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 243/449 (54%), Gaps = 31/449 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS+ L G +S R+ + + ++ D
Sbjct: 213 RQFCENGAGEYEQQRDFPAVEGTSRLSVSLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIKN 465
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAARQ 470
>gi|332160904|ref|YP_004297481.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386309317|ref|YP_006005373.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418242332|ref|ZP_12868845.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433550393|ref|ZP_20506437.1| Deoxyribodipyrimidine photolyase [Yersinia enterocolitica IP 10393]
gi|318604809|emb|CBY26307.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665134|gb|ADZ41778.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862934|emb|CBX73069.1| deoxyribodipyrimidine photo-lyase [Yersinia enterocolitica W22703]
gi|351778261|gb|EHB20426.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431789528|emb|CCO69477.1| Deoxyribodipyrimidine photolyase [Yersinia enterocolitica IP 10393]
Length = 481
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/401 (32%), Positives = 223/401 (55%), Gaps = 26/401 (6%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKEL--KVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
+DA+ NH YE +RD+ + ++ + I C F D V+ IL + Y +F
Sbjct: 96 QVDALFYNHQYELNERMRDEALVVQMGHRAIACHGF--HDAVLLPPGSILTGNNEMYKVF 153
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ +++ +I+++ + C P ++ S L + + + S
Sbjct: 154 TPFRRAFIQRLMMSDCRSVPAPKARTTAAVIPSQPLAP-----------FDYPQQPVDSQ 202
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
G A L F ++ +++Y R++P++ GTS LS +L G +S R+ V +
Sbjct: 203 LFPAGEEAALQRLRRFCREDVQDYQQQRDFPAVAGTSCLSPYLALGILSPRQCVNRLRAE 262
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNF 303
+ + G F WL++LIWR+FY+ +L YP + + F D ++W N++++
Sbjct: 263 CPEVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQHHPFIGWTDAVIW---NHSEQQL 319
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
+ W +G TGYP++D+A+ QLN +G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D
Sbjct: 320 IAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLLDG 379
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
DLA+NNG WQW+AS+G + P+FRIFNP Q ++FD G+FIR++LP+L+ + + IH P
Sbjct: 380 DLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVFIRRWLPELAAVPDSDIHQP 439
Query: 424 WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
W+ + + + +YP P++EH ++ L + K
Sbjct: 440 WRWAERQQQSL------DYPPPLVEHKQARLATLAAFEAAK 474
>gi|322707580|gb|EFY99158.1| photolyase [Metarhizium anisopliae ARSEF 23]
gi|374257342|gb|AEZ01568.1| CDP photolyase [Metarhizium robertsii]
Length = 587
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/477 (33%), Positives = 251/477 (52%), Gaps = 45/477 (9%)
Query: 5 CVFI-----FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE 59
C++I F+ ++ P+R ++FI +++ L +L D L I K+
Sbjct: 127 CMYIVSPQDFEAHLTSPVR---------VDFILRTLEILKRDLAKLDIPLYIETVERRKQ 177
Query: 60 IKKLVIKL----NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
I V++L + N +YE + R+ + +L G F D + ++
Sbjct: 178 IPDRVLELMEQWGSRHLFANMEYEVDELRREANMVHDLAENGKSFEVVHDTCVVPPGQLQ 237
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSY--------PVKSYLNNLVHSSKLHKIINN 167
+ +G Y+++S + + W+ + ++ L+ + + +L + N
Sbjct: 238 SGSGNQYAVYSPWYRSWVAHIHADLDLLELFDPPNKNPGTARKRFKDLFDCAVPEAPSNK 297
Query: 168 NIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIH 226
+ K SL G + AK L+ F + +I Y+ NRN P+ +GTS LS+H
Sbjct: 298 ELTKEE-----KRRFHSL-WPAGENAAKERLDKFCEERIGGYSDNRNIPAEDGTSSLSVH 351
Query: 227 LRFGTISIRKLVKLIFKFIK-KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSF 284
L G+IS R V+ K K G W+S++ WRDFY+ +L +P V +NK +
Sbjct: 352 LASGSISSRTCVRTARDRNKTKKLDGGNEGIRVWISEVAWRDFYKHVLVHWPYVCMNKPY 411
Query: 285 KKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKN 344
K EY NI W +Y +++F WC+G TG+P++D+A+ QLN +GYMHNR RM+ ASFL K+
Sbjct: 412 KPEYSNIAW---SYNEEHFKAWCEGRTGFPIVDAAMRQLNHNGYMHNRCRMIVASFLSKD 468
Query: 345 MGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIF 404
+ I+W+ GE YF L D D ASNNG W +SAS G QP+FRIFNP++QS+KFD +G++
Sbjct: 469 LLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPYFRIFNPLLQSEKFDPEGVY 528
Query: 405 IRKYLPQLSKLSNKYIHSPW-KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
IRK++P+L L NK IH P+ + + K KAG YPKPI+ H + L Y
Sbjct: 529 IRKWVPELQDLDNKEIHDPYGRGAGAKARKAG------YPKPIVNHKDCRDRALNAY 579
>gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|448293624|ref|ZP_21483728.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|445569955|gb|ELY24522.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
Length = 484
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/473 (28%), Positives = 242/473 (51%), Gaps = 27/473 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD+++LD + R+ ++ ++ EL Q SDL++ +
Sbjct: 27 VAPLFVFDRDVLDHAGAP------RVRYLLDALAELRGAYQERGSDLLVARGDPRTVVPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ + + + DY A RD ++ L G D + I G Y
Sbjct: 81 VAAAFDAERAVWGIDYSGLARERDADVRLALDDAGVAREPVHDAIFHPPGSITTNAGDTY 140
Query: 123 SIFSFYQKKWIEKVKSN-------KCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
S+++++ KKW ++ K + + + ++S +L + I + +++DL
Sbjct: 141 SVYTYFWKKWRDRDKPDPYPEPDADDLVDAATLESAAEDLTNGDAEFDIAVGGLPTISDL 200
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISI 234
GF + + S G A+ L+ F I Y +R+YP+ + TS LS L+FGTI I
Sbjct: 201 GFEEPSASVQ--PAGTEAARERLSAFCADAIYRYADDRDYPTRDATSRLSTDLKFGTIGI 258
Query: 235 RKLVKLIFKFIKK--HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNIL 292
R++ + + + + F SQL WR+FY +L +PNVV +++K+ ++I
Sbjct: 259 REVYAATAAAREGVGGERDESVEEFQ--SQLAWREFYAHVLRGHPNVVTENYKEYEEDIA 316
Query: 293 WESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWG 352
W D+ + W G TGYP++D+ + QL YMHNR+RM+ ASFL K++ +W+ G
Sbjct: 317 WRDDD---EELAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCDWRHG 373
Query: 353 ENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQL 412
+F L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D G +I++Y+P+L
Sbjct: 374 YAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKRYVPEL 433
Query: 413 SKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
S ++ IH + + + E+ L +YP+PI++H+ ++ + + +
Sbjct: 434 SDVTANTIHEWHELTDLERER----LAPDYPEPIVDHAERRERAISMFEAARG 482
>gi|411117128|ref|ZP_11389615.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713231|gb|EKQ70732.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 493
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/465 (31%), Positives = 241/465 (51%), Gaps = 30/465 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D IL + + R+ ++ + L S L+I + K I
Sbjct: 31 VVGVFCLDPTIL----QRDDVAPVRVSYMLGCLQSLQEGYAKVGSQLLIVKTLPQKGIVN 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L LN AV N D EP + RD+ + L+ G + + DQ++ +I +G+PY
Sbjct: 87 LATTLNARAVFWNQDVEPYSRARDRTVAAALREQGIEACPFWDQLLHAPKDITTGSGQPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN----NIISLNDLGFC 178
++++ + + W K KS P+ + ++K ++ + + + DLGF
Sbjct: 147 TVYTPFWRNWSSKEKSQ-------PLDTLAQVTGLTAKEQELASQAGAIELPTAPDLGFI 199
Query: 179 KSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ + I+ G +GA + L F + I Y RN+P+ GTS LS L+FG I IR +
Sbjct: 200 WT--APFVIEPGEAGASVKLEEFCNRAIAEYQEQRNFPAYPGTSQLSAALKFGAIGIRTV 257
Query: 238 VKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+++ + TW +L WR+FYQ LY +P + + +++ + + WE+
Sbjct: 258 WAATLAAMEQSRSNEARDSIRTWQQELAWREFYQHALYFFPELADGPYRQVFKHFPWENR 317
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
+ F WC+G TGYP++D+A+ QL G+MHNR RM+ ASFL K++ ++ +WGE YF
Sbjct: 318 ---EDRFQAWCEGRTGYPIVDAAMRQLKEIGWMHNRCRMIVASFLTKDLLVDHRWGEKYF 374
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
KL D DLA+NNG WQWS SSG +P RIFNP Q+KKFD + +IR+++P+L +
Sbjct: 375 MQKLIDGDLAANNGGWQWSTSSGMDPKP-LRIFNPASQAKKFDPEAEYIREWIPELRSVD 433
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ + S K S + ++ G YP+ I++H++ ++ + Y
Sbjct: 434 TEVLVSG-KIPSAERDRCG------YPEAIVDHNVQQRRFKELYQ 471
>gi|410641215|ref|ZP_11351738.1| deoxyribodipyrimidine photo-lyase [Glaciecola chathamensis S18K6]
gi|410139342|dbj|GAC09925.1| deoxyribodipyrimidine photo-lyase [Glaciecola chathamensis S18K6]
Length = 438
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/431 (35%), Positives = 239/431 (55%), Gaps = 23/431 (5%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
+R+ + + + E +INLQ D + Y +++ +L +K ++ V N +YE R
Sbjct: 11 QRLVSLQEELKERNINLQVMDGGI---YETLPEKLTELCVKNHVTHVYCNAEYEWDERQR 67
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
D +K L + F ++ D + + EI+N +PY +F+ Y K+W+E L
Sbjct: 68 DASVKNSLNKMDVAFATFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLEMTLRQ---LPG 124
Query: 146 YPVKSYLNN--LVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK 203
P K N+ L HS ++ I + I N G S+ S AS +N FI
Sbjct: 125 VPEKCSANDTGLKHSEDDNQYIESLISKTNRQGSDGSDAPSW--PATASEITKKMNGFIV 182
Query: 204 KI-KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
+ +Y NR+ PSI GTS +S +L G +S R+ + + + + + G +TW+ +
Sbjct: 183 EFAPDYPKNRDIPSIEGTSKISPYLSIGALSPRQCLFHVLQEYGEDALSPEHGAYTWVKE 242
Query: 263 LIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+ WRDFY+ +++ +P+V F+K Y WE++ +++F W G TGYP++D+A+I
Sbjct: 243 IAWRDFYRYVMFHFPHVSRGLPFQKHYQYFKWENN---QQHFDAWKAGETGYPIVDAAMI 299
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
L +G+MHNRLRM+ ASF K++ + WKW E+YF ++L D D ASNNG WQWSAS G
Sbjct: 300 ALKQTGWMHNRLRMIVASFYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTD 359
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ P+FRIFNP QS++FD QG FI+ +LPQL+ LS K +H P K +++ G L
Sbjct: 360 AAPYFRIFNPTTQSERFDPQGEFIKTWLPQLAHLSPKQVHEPSKHCD--VQRLGYAL--- 414
Query: 442 YPKPILEHSLS 452
PI+EH S
Sbjct: 415 ---PIVEHKAS 422
>gi|451850789|gb|EMD64090.1| hypothetical protein COCSADRAFT_36669 [Cochliobolus sativus ND90Pr]
Length = 634
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/458 (34%), Positives = 239/458 (52%), Gaps = 35/458 (7%)
Query: 22 IIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHD 77
++ + +F +S+ L L+ D L I K IKK +++L N+ V N +
Sbjct: 184 LVSPPKCDFELRSVQLLKQELEELDIPLYIETVRERKNIKKRLVELALEWNVKNVFCNLE 243
Query: 78 YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
YEP + R++ + + + G D + + TGK Y++++ + + W+
Sbjct: 244 YEPDELRREERLVRMMLEKGINMDPQHDDCVVPPGSLKTGTGKQYAVYTPWYRAWV---- 299
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL-----NDLGFCKSNLSSLGIK---- 188
YL ++P L K N + L DL CKS + +
Sbjct: 300 ---AYLHAHP--HLLKERSMPEKNPAGFRENFMKLFDCRVPDLPECKSLTAEEKERFRHL 354
Query: 189 --TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
G S A L F+ +K+ Y RN+P++N T +S+H GT++ R V++ + I
Sbjct: 355 WPAGESAAIDRLERFLTEKVTKYKDTRNFPALNSTGRISVHHAAGTLAARTSVRMA-RDI 413
Query: 246 KKHYKTDC--IGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKN 302
K D G W+ ++ WRDFY+ +L +P V +NK FK EY NI WE Y +
Sbjct: 414 NSVKKLDGGKEGIKGWIGEVAWRDFYRHVLVHWPYVCMNKPFKYEYTNIEWE---YNDAH 470
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A+ L +GYMHNRLRM+TASFL K++ ++W+ GE YF L D
Sbjct: 471 FQAWTQGRTGYPIVDAAMRCLKHTGYMHNRLRMITASFLAKHLLLDWRLGEQYFITHLID 530
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
D ASNNG W +SAS+G QP+FRIFNP QS+KFD QG FIR ++ +L + IH+
Sbjct: 531 GDFASNNGGWGFSASTGVDPQPYFRIFNPWTQSEKFDEQGEFIRLWVKELEGMQGAAIHN 590
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
P++A K E I YP+PI+EH +++ L RY
Sbjct: 591 PYQA---KGEAVKIAKKNGYPEPIVEHKFARERCLARY 625
>gi|37676017|ref|NP_936413.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016]
gi|37200557|dbj|BAC96383.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016]
Length = 471
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/457 (31%), Positives = 246/457 (53%), Gaps = 34/457 (7%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+ + + + L+I L YD + YA ++ + +L + V+
Sbjct: 46 MAPMQADLIA--RRLAVLAEELNALNIPLL-YDE--VDDYAQSATRVANWAEQLAVSEVV 100
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
+N +YE +RD+ + L +D+ + +LNK G + +F+ ++K W+
Sbjct: 101 LNREYEVNERVRDEQLVNRLASSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWL 160
Query: 134 EKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASG 193
+ + S L + SS H+ F SS +
Sbjct: 161 KSFIPPQIIKTSAAQPVVLPEALQSSLWHE----------QAPFSYPRQSSEAWSVDSQQ 210
Query: 194 AKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
+ L F +++ Y+ R++P+ GTS LS +L G IS+R+ + ++ ++ Y ++
Sbjct: 211 IRETLRRFCHEEVDRYHEQRDFPATAGTSVLSPYLAIGAISVRQCIARLY--WQQSYLSN 268
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKN-FLNWCKGY 310
G WLS+LIWR+FY +++ P +V + F + ++LW AK + F WC+G
Sbjct: 269 --GREVWLSELIWREFYHHLIHFEPKLVKGQGFVEWEKHLLWP----AKPDWFERWCRGE 322
Query: 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNG 370
TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ +NW+ GE YF KL D D A+NNG
Sbjct: 323 TGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHVNWRLGEQYFMQKLVDGDFAANNG 382
Query: 371 NWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYK 430
WQW AS+GC QP+FRIFNPI Q +KFD G F++ +LP+L+++ +K++H PWK +
Sbjct: 383 GWQWCASTGCDGQPYFRIFNPITQGEKFDPNGEFVKHWLPELAEVPSKFVHQPWKWLGH- 441
Query: 431 LEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+ +YP P+++H ++ L Y K+ L
Sbjct: 442 -------MRLDYPAPMVDHKQEREITLSLYTQAKDCL 471
>gi|448529029|ref|ZP_21620344.1| deoxyribodipyrimidine photolyase [Halorubrum hochstenium ATCC
700873]
gi|445709735|gb|ELZ61559.1| deoxyribodipyrimidine photolyase [Halorubrum hochstenium ATCC
700873]
Length = 502
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 132/477 (27%), Positives = 238/477 (49%), Gaps = 31/477 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLV 64
VF+FD ++LD D R+ + + L + + SDL++ + +L
Sbjct: 36 AVFVFDPDVLD------HASDVRVRRLLDGLAALRDDYRERGSDLLVARGDPENVLPRLA 89
Query: 65 IKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSI 124
L+ + V+ N DY A RD +++ L + + +++D V+ + + I G PYS+
Sbjct: 90 EALDAERVVWNRDYSGLARERDAGVRRALDAVDVEREAHQDAVLHDPDAIRTNAGDPYSV 149
Query: 125 FSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVH----------SSKLHKIINNNIISLND 174
+S+Y KKW ++ K + + + L + + ++ ++ + D
Sbjct: 150 YSYYWKKWTDRAKDDPRPAPTTEGLVDADALAAAVGSEARADGGAAVDRVAVGDLPTPAD 209
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTIS 233
LGF + + + G + A+ L+ F+ + + Y R+YP+ TS LS L++G I
Sbjct: 210 LGFAEPDAET--GPAGTAAARERLSAFLDEAVFAYEAERDYPAKEATSRLSAFLKYGEIG 267
Query: 234 IRKLVKLIFKFIKKHYKTDCIGYFT-----WLSQLIWRDFYQMILYCYPNVVNKSFKKEY 288
+R+ + + D + QL WR+FY +L+ P VV ++FK
Sbjct: 268 VREAYAATADAMSEAESDDRPDDAPEQVEEFQQQLAWREFYTQVLFHNPEVVTENFKTYE 327
Query: 289 DNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGIN 348
+ I W D + W +G TGYP++D+ + QL +MHNR+RM+ ASFL K++ +
Sbjct: 328 EGIEWRDD---PEEIGAWKRGETGYPIVDAGMRQLREEAFMHNRVRMIVASFLTKDLLAD 384
Query: 349 WKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKY 408
W+ G ++F ++L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D +I++Y
Sbjct: 385 WRHGYDHFRDRLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKEY 444
Query: 409 LPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+P+L + IH + S + A YP P+++HS ++ L Y +
Sbjct: 445 VPELRGVDADLIHEWHELSPTRRANA----APEYPAPVVDHSERREEALAMYKRARG 497
>gi|152989300|ref|YP_001350641.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
gi|150964458|gb|ABR86483.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
Length = 477
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/442 (30%), Positives = 236/442 (53%), Gaps = 27/442 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + +L +L I AV +N +Y
Sbjct: 47 KVDFWLRNLSELQRQLAALNIPLLVRDCEHWRQAPTVLGRLCSELGIGAVHVNQEYGANE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F + DQ+ F +L + G + +FS +++ C+
Sbjct: 107 QRRDQAVARHLREQGVAFHEHLDQLFFAPGSVLTRGGGYFQVFSQFRRV---------CH 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
+ Y + H+++ + + GF + G + A+ L +F
Sbjct: 158 ERLYQALPAVQPRPQPQPPHRLLPGDPLPDAVPGFAAPGAGLRALWPAGETAAQQRLRDF 217
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
++ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 218 AEQHLDDYHEQRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGRQGAATWI 277
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 278 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 334
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 335 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 394
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QSK+FD +G FIR +LP+L+ L K IH P + G+ G
Sbjct: 395 TDAVPYFRLFNPLSQSKRFDPRGEFIRHWLPELAGLERKAIHDP--------SRLGLFAG 446
Query: 440 KNYPKPILEHSLSKKNILKRYN 461
+YP+ +++ S++ L +
Sbjct: 447 VDYPQSMVDLKASRERALAAFR 468
>gi|390949735|ref|YP_006413494.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
gi|390426304|gb|AFL73369.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
Length = 495
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 138/447 (30%), Positives = 231/447 (51%), Gaps = 27/447 (6%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S++ L +LQ + S L I + E++++V V N Y+P RD I
Sbjct: 54 WLHGSLLALDASLQRFGSRLWIARGDSLTELRRIVAATGATGVSWNRLYDPATRERDTHI 113
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILN------KTGKPYSIFSFYQKKWIEKVKSNKCYL 143
K+ L+ G + S++ ++FE EI + KTG+PY +FS + + + ++ +
Sbjct: 114 KQALRSDGLRCESHRSTLLFEPWEIASQTRSASKTGQPYRVFSAFWRACVRELSG----I 169
Query: 144 QSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT----GASGAKILLN 199
+ P L + ++++DLG + G++ G S A
Sbjct: 170 RPDPAPESLPA--------GFAPVDGLTVDDLGLLPTIPWDQGLRATWTPGESAALARAT 221
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F+ +I Y++ R+ P GTS LS HL FG IS R+L+ +I +
Sbjct: 222 AFLDARIGAYSVARDRPDAPGTSRLSPHLHFGEISPRRLLAMILDRFGDPAADPAESF-- 279
Query: 259 WLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+ +L WR+F +LY +P + + + W ++ A++ W +G TG PL+D+
Sbjct: 280 -VRELGWREFSYHLLYHFPRTPVEPLDPRFADFPWRTEGVAER-LDAWQRGRTGIPLVDA 337
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
+ +L +G+MHNR+RMV AS L KN+ + W+ G +F + L D DLASN WQW+A
Sbjct: 338 GMRELWHTGWMHNRVRMVAASLLTKNLRLPWQVGARWFWDTLVDADLASNTQGWQWTAGC 397
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G + P+FR+FNP+ Q ++FD G ++R++ P+L++L N+YIH PW A L A I L
Sbjct: 398 GADAAPYFRVFNPVRQGERFDPDGGYVRRWCPELARLPNQYIHQPWTAPPPILMAADIRL 457
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKN 465
G +YP PI++ + S++ L + IK
Sbjct: 458 GCHYPLPIVDLATSRQEALAAWGTIKG 484
>gi|194433989|ref|ZP_03066260.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012]
gi|417671427|ref|ZP_12320918.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 155-74]
gi|194417754|gb|EDX33852.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012]
gi|332096470|gb|EGJ01466.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 155-74]
Length = 472
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/448 (33%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS+ L G +S R+ + + ++ D
Sbjct: 213 RQFCENGAGEYEQQRDFPAVEGTSRLSVSLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK ++KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKW----VQKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2]
gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris HaA2]
Length = 487
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 245/468 (52%), Gaps = 25/468 (5%)
Query: 5 CVFIFDKNI--LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
C+++ D+ L P +++ I R ++ +S+ L+ L+ + LI+R A+ + +
Sbjct: 37 CIYVHDEQSPQLRPPQARPIGGAARW-WLAQSLRALAAELEQRGARLILRRGPAAAIVGE 95
Query: 63 LVIKLNIDAVMINH-DYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L +++ AV N + P I D L + L + G + ++ +EI K G+
Sbjct: 96 LARQVDAAAVHWNEIEIAPHRAIADDLAET-LSMSGIDHHRHPGDLLVAPSEIRTKDGRG 154
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+F+ + ++ + K P + L + I ++ + L +
Sbjct: 155 LRVFTPFWRRVLGLGDPPK----PLPAPAML-------RAGPDIASDDPATWQLEPTAPD 203
Query: 182 LSSLGIKT----GASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ G++ G A LL F+ ++ Y +R+ P + TS LS HLRFG IS R+L
Sbjct: 204 WAG-GLRASWTPGERAAHDLLTAFLDRLPGYAADRDRPDRDATSLLSPHLRFGEISPRQL 262
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+F +LS+L WR+F + +L+ +P++ ++ + +D W D+
Sbjct: 263 W-YAARFAAAKRPAIAADIDKFLSELGWREFCRHLLHDHPDLAERNLQSAFDAFPWTRDD 321
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A W +G TGYP++D+ + QL +G MHNR+RMV ASFL+K++ I+W+ GE +F
Sbjct: 322 AA---LAAWQRGRTGYPIVDAGMRQLWHTGVMHNRIRMVVASFLVKHLLIDWRLGEEWFW 378
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+ L D D SN GNWQW A SG + P+FR+FNPI+Q +KFD G ++R+++P+++ L N
Sbjct: 379 DTLVDADPGSNPGNWQWVAGSGADAAPYFRVFNPILQGEKFDPAGDYVRRWVPEIAALPN 438
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
K+IH PW A+ + AG+ LG NYP PI++H + + L Y ++
Sbjct: 439 KFIHQPWTATLLERAAAGVALGGNYPAPIVDHKVGRARALAAYAELRQ 486
>gi|410089563|ref|ZP_11286177.1| deoxyribodipyrimidine photolyase [Pseudomonas viridiflava
UASWS0038]
gi|409763098|gb|EKN48083.1| deoxyribodipyrimidine photolyase [Pseudomonas viridiflava
UASWS0038]
Length = 482
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/450 (32%), Positives = 244/450 (54%), Gaps = 31/450 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEP 80
D +++F ++++EL L + L+IR A A + + KL + I+AV N +Y
Sbjct: 45 DCKVDFWLRNLVELEKALGKLNVPLLIREADTWDKAPEVLSKLCKQFKIEAVHANEEYGI 104
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ ++K L+ G F S+ DQ++F+ +L KTG + +FS ++K
Sbjct: 105 NETRRDEAVQKTLEDAGVHFQSHLDQLLFKPGSVLTKTGNYFQVFSQFKKV--------- 155
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL--GFCKSNLSSLGI-KTGASGAKIL 197
CY + + + V + K + ++ + GF + + + G A
Sbjct: 156 CYSR---LHEAMPRTVRTPKPQDSLPTKSDAIPEAVKGFSAPSEALRNLWPAGEDEAHRR 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L+ F +I Y R+ P+ GTS LS +L G +S R+ + ++T G
Sbjct: 213 LSEFTDDQIHYYKTERDLPAKPGTSQLSAYLAAGVVSPRQCLHAALTSNHGEFETGSEGS 272
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TW+++L+WR+FY+ L YP V +++F+ E + + W + A + L W + TG P+
Sbjct: 273 VTWINELLWREFYKHTLVGYPRVSRHRAFRPETEALQWRN---APEELLAWQEARTGLPI 329
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS
Sbjct: 330 IDAAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWS 389
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
+S+G S P+FRIFNP+ QS++FD +G+F++++LP+L+ L+ K +H+P A G
Sbjct: 390 SSTGTDSVPYFRIFNPLSQSERFDPEGVFLKRWLPELADLNKKQVHNPASA-------GG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ +YP PI++ S S+ L + +
Sbjct: 443 LFGVADYPAPIVDLSKSRARALAAFKALPG 472
>gi|398869857|ref|ZP_10625214.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM74]
gi|398210269|gb|EJM96921.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM74]
Length = 480
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 257/454 (56%), Gaps = 36/454 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
+++F +++ +LS L + L+IR A + K+++ L +DA+ +N +Y
Sbjct: 47 KVDFWLRNLRQLSHELGQLNIPLLIRRAPRWDDAPKILLTLCRQWQVDALHLNDEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L+ G + Y DQ++F+ +L +TG + +FS ++K E++ +
Sbjct: 107 SRRDAAVARTLQAEGIEVRRYLDQLLFKPGSVLTRTGTYFQVFSQFRKICYERLHHS--- 163
Query: 143 LQSYPVKSYLNNLVHSSKLHKIIN--NNIISLNDLGFCKSN--LSSLGIKTGASGAKILL 198
L NLV + +N ++ + L+ GF + L +L G + A+ L
Sbjct: 164 ---------LPNLVRAPHKQAPLNIASDALPLSVDGFATPDEYLRNL-WPAGEAEARHRL 213
Query: 199 NNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
++F +I++Y R++P+ +GTS LS +L G IS+R+ + + +++ G
Sbjct: 214 DSFSDAQIEHYQSERDFPAKSGTSQLSAYLAAGVISVRQCLHAALNSNQGEFESGKTGAV 273
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TW+++L+WR+FY+ IL YP V +++F+ E + + W + A + W + TG P+I
Sbjct: 274 TWINELLWREFYKHILVGYPRVSRHRAFRPETEALAWRN---APEELAAWQQARTGLPII 330
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+
Sbjct: 331 DAAMRQLLATGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSS 390
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G P+FRIFNP+ QS+KFD +G+FI+++LP+L+ L+ K +H+P G+
Sbjct: 391 STGTDPAPYFRIFNPLSQSEKFDPEGVFIKQWLPELAGLNKKDVHNP-------ANLGGL 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP I++ S S+ L + KN+ +R
Sbjct: 444 FGVVDYPSAIVDLSTSRTRALTAF---KNLPSRQ 474
>gi|332306448|ref|YP_004434299.1| deoxyribodipyrimidine photo-lyase [Glaciecola sp. 4H-3-7+YE-5]
gi|332173777|gb|AEE23031.1| Deoxyribodipyrimidine photo-lyase [Glaciecola sp. 4H-3-7+YE-5]
Length = 482
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/431 (35%), Positives = 239/431 (55%), Gaps = 23/431 (5%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
+R+ + + + E +INLQ D + Y +++ +L +K ++ V N +YE R
Sbjct: 55 QRLVSLQEELKERNINLQVMDGGI---YETLPEKLTELCVKNHVTHVYCNAEYEWDERQR 111
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
D +K L + F ++ D + + EI+N +PY +F+ Y K+W+E L
Sbjct: 112 DASVKNSLNKMDVAFATFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLEMTLRQ---LPG 168
Query: 146 YPVKSYLNN--LVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK 203
P K N+ L HS ++ I + I N G S+ S AS +N FI
Sbjct: 169 VPEKCSANDTGLKHSEDDNQYIESLISKTNRQGSDGSDAPSW--PATASEITKKMNGFIV 226
Query: 204 KIK-NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
+ +Y NR+ PSI GTS +S +L G +S R+ + + + + + G +TW+ +
Sbjct: 227 EFAPDYPKNRDIPSIEGTSKISPYLSIGALSPRQCLFHVLQEYGEDALSPEHGAYTWVKE 286
Query: 263 LIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+ WRDFY+ +++ +P+V F+K Y WE++ +++F W G TGYP++D+A+I
Sbjct: 287 IAWRDFYRYVMFHFPHVSRGLPFQKHYQYFKWENN---QQHFDAWKAGETGYPIVDAAMI 343
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
L +G+MHNRLRM+ ASF K++ + WKW E+YF ++L D D ASNNG WQWSAS G
Sbjct: 344 ALKQTGWMHNRLRMIVASFYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTD 403
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ P+FRIFNP QS++FD QG FI+ +LPQL+ LS K +H P K +++ G L
Sbjct: 404 AAPYFRIFNPTTQSERFDPQGEFIKTWLPQLAHLSPKQVHEPSKHCD--VQRLGYAL--- 458
Query: 442 YPKPILEHSLS 452
PI+EH S
Sbjct: 459 ---PIVEHKAS 466
>gi|251782896|ref|YP_002997199.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391526|dbj|BAH81985.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 474
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 244/470 (51%), Gaps = 45/470 (9%)
Query: 5 CVFIFDKNILD--PLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
CVF F++ L P R+Q + + F + + E I+L DLI + ++++ +
Sbjct: 31 CVFQFNQEQLSQPPSRNQSAVVASVLAFK-EELKEKGIDLYVMHGDLITCFEQLAQQLDQ 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
V N+D RD+ + + +Y+D + EI N++G+ Y
Sbjct: 90 WT------DVYFNYDESGFGRRRDQQAAQWFRAKKINIHAYQDHYLHGSQEIKNQSGQYY 143
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPV------KSYLNNLVHSSKLHKIINNNIISLNDLG 176
IF+ Y + W +C + PV ++L+ + + L I + ND+
Sbjct: 144 KIFTPYYRVW-------QCLPKETPVVVDLSRGNWLSLKIPQATLELIETLKDTTFNDVM 196
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
K AK LN+F+ ++ +Y+ R++PS GTS+LS +LR G +SIR
Sbjct: 197 TVKE-------------AKERLNHFVDNQLADYDTTRDFPSRCGTSFLSPYLRLGMVSIR 243
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + + G +L +L WRDFY M+ PN + ++ + ++ W+
Sbjct: 244 TVYQAVSQ------APASSGQAVFLKELAWRDFYHMVYVANPNQKKLAIQEAFRHLEWDE 297
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ A F W +G TGYP+ID+A+ QL ++G+MHNRLRMV ASFL K++ I+W+ GE Y
Sbjct: 298 NPAA---FKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQIDWRLGEAY 354
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F +L D+D ASN G WQW+AS G + P+FRIFNP+ Q K+FD G FIR YLP L +
Sbjct: 355 FQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIRSYLPSLVSV 414
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
Y++ PWK E I+GK+YP P+++H+ +K + RY + K
Sbjct: 415 PQTYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQRKRAIARYEWAKE 464
>gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
Length = 473
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 224/387 (57%), Gaps = 30/387 (7%)
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS--NKCY 142
RD IK+ ++ G S+++ + + E+ + G Y F+ Y KKWI+ K K
Sbjct: 109 RDLYIKELVEKKGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQA 168
Query: 143 LQSYPVKSYLNNLVH----SSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
L + ++ N+ H ++ L +++NN K++ S++ G A L
Sbjct: 169 L-DFEKAAHFNDAPHFKAGTALLAEVLNNR----------KTDFSTI---VGEDYAHKQL 214
Query: 199 NNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F+ K++ Y +R+ PSI GTS LS L FG ISIRK+ + G
Sbjct: 215 QAFVQKRLAAYEKDRDLPSIKGTSRLSPFLSFGQISIRKV------WAACQGMPPSTGKA 268
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
T+L +L WRDFY MI + +P N ++Y N+ W+ D A F W G TGYP+ID
Sbjct: 269 TFLKELAWRDFYHMIYFTHPEQKNYELIEKYRNMDWQKDEEA---FNKWQAGQTGYPIID 325
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+ GE YFA +L D+D ASN G WQW+AS
Sbjct: 326 AAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAAS 385
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G + P+FRIFNPI Q KKFD +G +I++++P+L++L K+IH P+ + + ++
Sbjct: 386 TGTDAVPYFRIFNPITQGKKFDKEGTYIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVV 445
Query: 438 LGKNYPKPILEHSLSKKNILKRYNFIK 464
LG +YP PI++H+ ++K L Y+ I+
Sbjct: 446 LGTDYPLPIVDHNEARKRALDLYSKIE 472
>gi|365901755|ref|ZP_09439584.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
gi|365417509|emb|CCE12126.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
Length = 480
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 239/469 (50%), Gaps = 27/469 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V CVF+FD D +R G ++ +S+ L +L+ +L++R + ++
Sbjct: 32 VICVFVFDDRSPD-VRPLGGASR---WWLAQSLRSLQASLRAVGGELVLRRGAPADVLRA 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + N AV N + +++ L +G + S+ D ++ + + K G+
Sbjct: 88 LASETNAAAVFWNDVAQAPQRAVAAEVEEALAALGIESRSFPDDLLVDPAMLRAKDGRGL 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + K+ + P L L + +++ DL +
Sbjct: 148 RVFTPFWKR--------VLAMGDPPAP-----LPAPRSLPPVAGIASLAVEDLQLEPTRP 194
Query: 183 SSLG-----IKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
G + G + A+ L F+ + K Y +R+ P ++ TS+L+ HLRFG I R+
Sbjct: 195 DWAGGLRARWQPGEAAAQQRLATFLGQTAKTYAADRDRPDLDATSHLAPHLRFGEIGPRQ 254
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
V +F + G +LS+L WR+F + +LY P++ + + +D+ W D
Sbjct: 255 -VWHAARFAASEHPAQAAGIDKFLSELGWREFSRQLLYDRPDLATCNLQTSFDDFPWRDD 313
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
A +W +G TGYP++D+ + QL SG MHNR+RMV ASFL+K++ I+W+ GE +F
Sbjct: 314 APA---LASWQRGETGYPIVDAGMRQLWHSGTMHNRVRMVVASFLVKHLLIDWRAGEQWF 370
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
+ L D D A+N WQW A G + P+FR+FNP++Q +KFD G ++R+++P L+KL
Sbjct: 371 WDTLVDADPANNPAGWQWVAGCGADAAPYFRVFNPVLQGEKFDPDGAYVRRWVPGLAKLP 430
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH PW+A+ +L AGI LG+ YP PI++H +++ L Y ++
Sbjct: 431 APLIHQPWRAAPLELASAGIALGRTYPAPIVDHKRARERALAAYATVRR 479
>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 477
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 249/469 (53%), Gaps = 28/469 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFI D ++ + G + ++ S+ L +++ +LI+R +
Sbjct: 30 VLPVFIHDPSLGNEWSLGGASQ----WWLHYSLKSLQASIEARGGELILRRGAPEDVLTA 85
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + AV + Y+P A + + + L G + Y ++FE +L G PY
Sbjct: 86 LIEESGASAVYSSRQYQPWATSLETTLHETLTDEGIDYKRYAGTLLFEPGSVLTGGGTPY 145
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + + C P + + + H + + S+ D SN
Sbjct: 146 KVFTPFWRA---------CLQSEAPREP---RSIPDVEWHVGVRSE--SVEDWNLRPSNP 191
Query: 183 S-SLGIKT----GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
+ + G ++ G GA L++F+ +K+Y R+ P+ TS LS HL+FG IS R+
Sbjct: 192 NWADGWESLWSPGEEGATRRLDDFLAGTVKHYGDGRDIPAEAYTSRLSPHLKFGEISPRQ 251
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ ++ K+ +LS++ WR+F +L +P + NK FK ++D+ W
Sbjct: 252 IWHAA-QYAKQRLPEAAESIDKFLSEIGWREFCYTLLDQFPEMPNKPFKAQFDHFPWAG- 309
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
+K W KG TGYP++D+ + +L +G+MHNR+RM+T SFL K++ +W+ GE +F
Sbjct: 310 --TQKALKAWQKGLTGYPIVDAGMRELWQTGFMHNRVRMITGSFLTKHLLTHWRAGELWF 367
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
+ L D D+ASN +WQW A SG + P+FRIFNPI Q +KFD G ++R+Y+P+++ L
Sbjct: 368 WDCLVDADIASNACSWQWVAGSGADASPYFRIFNPIAQGEKFDKAGEYVRRYVPEIANLP 427
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+KYIH PW+A + LE++GI+LG YP+PI++H ++++ L Y +KN
Sbjct: 428 DKYIHKPWEAPASILEQSGIVLGDTYPEPIVDHKSARQSALAAYEEVKN 476
>gi|424894750|ref|ZP_18318324.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393178977|gb|EJC79016.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 482
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/441 (31%), Positives = 235/441 (53%), Gaps = 20/441 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L L+ L++ A + ++ + + AV N Y+P D I
Sbjct: 57 WLHHSLEALDRALRKRQGQLVLASGEALEVLRAFISESGAAAVFWNRRYDPSCTTIDIRI 116
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K ELK + S+ Q++ E + ++ +G PY +++ + + +E L++ PVK
Sbjct: 117 KHELKKQAIEVRSFGGQLLHEPSRLMTGSGTPYRVYTPFWRA-LEGAGELALPLEA-PVK 174
Query: 150 SYLN-NLVHSSKLH--KIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-I 205
L L S +L K++ D G + G G + L F++ +
Sbjct: 175 LQLAAQLPKSERLESWKLLPTKPDWARDFGDLWT--------PGEQGGRDKLRAFVEDTL 226
Query: 206 KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIW 265
Y NR+YP+ TS LS HL G IS ++ K+ D + + ++ W
Sbjct: 227 DGYRENRDYPAKQATSMLSPHLALGEISPARIWDATRGLSKRVPAADIVHF---RKEIAW 283
Query: 266 RDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNS 325
R+F +L+ +P + + ++ +D W + A ++F WC+G TGYP++D+ + QL
Sbjct: 284 REFSYHLLFHFPRLASSNWNDRFDGFEWRN---ADEDFEAWCRGLTGYPIVDAGMRQLWR 340
Query: 326 SGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPF 385
G+MHNR+RM+ ASFLIK++ ++W+ GE +F + L D D A+N +WQW A SG + PF
Sbjct: 341 HGWMHNRVRMIVASFLIKDLMVDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPF 400
Query: 386 FRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKP 445
FRIFNP++Q + FD G ++R ++P+L +L+ KYIH P++A L++AGI LG+ YP+P
Sbjct: 401 FRIFNPVLQGQTFDPDGDYVRAHVPELRELAAKYIHRPFEAPKSMLDEAGITLGQTYPRP 460
Query: 446 ILEHSLSKKNILKRYNFIKNI 466
I++H+ ++ L Y K++
Sbjct: 461 IVDHASARNRALAAYKATKDV 481
>gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
Length = 481
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 150/462 (32%), Positives = 251/462 (54%), Gaps = 26/462 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V C++I D+ +R G + ++ KS+ L+ L+ + L++R +A+ +
Sbjct: 41 VVCLYILDETPG--VRPMGAAS---LWWLDKSLKSLAQELEKLGNRLVLRKGVAADVLDA 95
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + V+ N Y+ ++ RD IK LK G S+ ++ E + N +G+PY
Sbjct: 96 LIAETGATGVVWNRLYDKASVDRDATIKARLKEAGVDCQSFNAGLLNEPWTVQNGSGQPY 155
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ Y W ++ + +L V+ L L K + + ++ DL + +
Sbjct: 156 KVFTPY---W----RAARQHLDDVTVEPAPKVL---RCLDKAVRSEPLAAWDLHPTRPDW 205
Query: 183 S-SLGIKT-GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
S + T G +GA+ L+ F+ I Y R+ PS TS LS HL FG I R+ V
Sbjct: 206 SKGFDLWTPGEAGARARLDAFLSGPITGYGEKRDIPSAPATSRLSPHLHFGEIGPRQ-VW 264
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
L + + +LS+L WR+F IL+ +P + ++FK E+D W D+ A
Sbjct: 265 LAARNAAEAGDIPTAEADKFLSELGWREFNHSILFHWPQLPARNFKPEFDGFPWAKDHAA 324
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
F W +G TGYP++D+ + +L ++G+MHNR+RM+ ASFLIK++ I+W+ GE +F +
Sbjct: 325 ---FEAWTRGETGYPIVDAGMRELWTTGFMHNRVRMIVASFLIKHLMIDWREGEAWFWDT 381
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D DLA+N GNWQW+A SG + P+FRIFNPI Q +KFD +G ++R+++P+L + +
Sbjct: 382 LVDADLANNVGNWQWTAGSGADAAPYFRIFNPISQGEKFDPRGDYVRRWVPELKTVPDDV 441
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
IH PW+ + A I Y KPI++H+ +++ L+ Y+
Sbjct: 442 IHKPWERPLHLSPAARRI----YAKPIVDHAKARERALEAYH 479
>gi|182414480|ref|YP_001819546.1| deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
gi|177841694|gb|ACB75946.1| Deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
Length = 501
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 126/425 (29%), Positives = 227/425 (53%), Gaps = 17/425 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L ++ LI+R E++++V V N YEP A RD +
Sbjct: 65 WLHHSLEALDAAVRERGGRLILRRGDPLAELQEIVRATGAKGVYWNRRYEPAARARDARV 124
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
+ EL G ++ ++ E ILNK G P+ +FS Y + + + L + P+
Sbjct: 125 QTELAAAGLDVKTFNSALLNEPETILNKQGGPFQVFSAYWRHCLTLPVAAPRKLPAGPIP 184
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYN 209
+ + + ++ + L L+ AS AK + I Y+
Sbjct: 185 A-------PERWPRSLDVAALELRPRVAWDRGLAQAWTPGEASAAKRMTRFVAGAIDRYD 237
Query: 210 INRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI-----GYFTWLSQLI 264
R++P +GTS LS L +G IS R+L + ++ + + G +L++L
Sbjct: 238 EERDFPGCDGTSMLSAALHWGEISPRQL----WAAVRGRSRESGVFPPSNGARIFLAELG 293
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
WR+F +L+ +P+ + + ++ + W D ++ W +G TGYP++D+ + QL
Sbjct: 294 WREFAYHLLWHFPHTIEQPLRRAFARFSWAEDPEGRR-LRAWQRGQTGYPIVDAGMRQLW 352
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
+G+MHNR+RM+ ASFL+K++ ++W G +F + L D DLA+N WQWSA G + P
Sbjct: 353 QTGWMHNRVRMIVASFLVKHLRLSWPHGATWFWDTLVDADLANNTLGWQWSAGCGADAAP 412
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIF P++Q +KFD G+++R+++P+L++L ++++H+PW A++ L AG+ LG+NYP+
Sbjct: 413 YFRIFAPVLQGRKFDSDGVYVRRWVPELARLPDRFLHAPWTATAQTLAAAGVRLGENYPR 472
Query: 445 PILEH 449
P+++H
Sbjct: 473 PVVDH 477
>gi|398942256|ref|ZP_10670194.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM41(2012)]
gi|398160808|gb|EJM49063.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM41(2012)]
Length = 497
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 149/441 (33%), Positives = 246/441 (55%), Gaps = 27/441 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+++F +++ EL L + L+IR A E ++++ +L I V +N +Y
Sbjct: 63 KVDFWLRNLSELRGALDELNIPLLIRKASRWDEAPRVLLDLCQQLKIGVVHVNEEYGIHE 122
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + LK FFSY DQ++ + +L KTG + +FS ++K ++++
Sbjct: 123 SRRDAAVAETLKANCIDFFSYLDQLLLKPGTVLTKTGTYFQVFSQFRKVCYDRLRG---- 178
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNF 201
S P + +++ I+++ I N GF + S + G + A L+ F
Sbjct: 179 --SLPKRVA----APAAQAPLAISSDKIPSNVEGFATPSDSLRRLWPAGEAEAHRRLDTF 232
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+I +Y R++P+ GTS LS +L G IS R+ + + + +++ +G TW+
Sbjct: 233 ADAQIDDYKSERDFPAKPGTSQLSAYLAAGVISPRQCLHAALQSNQGEFESGKVGTVTWI 292
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W A L W + TG P+ID+A
Sbjct: 293 NELLWREFYKHILVGYPRVSRHRAFRPETETLAWRD---APDELLAWQEARTGLPIIDAA 349
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S+G
Sbjct: 350 MRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTG 409
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
S P+FRIFNP+ QS+KFD +G+FI+ +LP+L+ L+ K +H+P S G+
Sbjct: 410 TDSAPYFRIFNPLSQSEKFDSEGLFIKHWLPELAGLNKKDVHNPANLS-------GLFGV 462
Query: 440 KNYPKPILEHSLSKKNILKRY 460
+YP PI+ S S++ L +
Sbjct: 463 ADYPSPIVNLSSSRQRALAAF 483
>gi|343515133|ref|ZP_08752192.1| deoxyribodipyrimidine photolyase [Vibrio sp. N418]
gi|342798665|gb|EGU34263.1| deoxyribodipyrimidine photolyase [Vibrio sp. N418]
Length = 483
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 248/451 (54%), Gaps = 29/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL +L + L + Y +++ ++ + V+ N +YE
Sbjct: 48 QADLIYRRLFELQQDLAQLNIPLLYMEVENYQQCVQQVSDCALRYGAERVVFNREYEVNE 107
Query: 83 IIRDKLIKK--ELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN- 139
RD L++ E+++ G + D+ + +LNK G+ + +F+ +++ ++ + N
Sbjct: 108 QDRDDLLQSHSEIEIQG-----FDDKCLLPPGSVLNKQGQYFKVFTPFKRAYLAGLTENL 162
Query: 140 KCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLN 199
+++ V+ N++ K ++S + F SS + + LL
Sbjct: 163 PPVVKTTAVRDDSTNILDIKAEQKESYPALLSTQSV-FSYPRESSERYVVNSKAIRQLLC 221
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI---G 255
F +++ NY+ +R+ P++N TS LS +L G +S+R+ V + + H T + G
Sbjct: 222 EFCHERVDNYHNDRDKPALNATSMLSPYLAIGALSVRQCVARVLYSAQAHQITSPLLGEG 281
Query: 256 YFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314
TW+S+L+WRDFYQ +L+ P + + F + + W +K++ W KG TGYP
Sbjct: 282 IHTWISELVWRDFYQHLLHFEPKLCKGRHFVTWTEKMHWPG---SKQHLAAWQKGMTGYP 338
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
++D+A+ QLN +G+MHNRLRMV ASFL K++ ++W GE YF KL D D A+NNG WQW
Sbjct: 339 IVDAAMRQLNQTGWMHNRLRMVVASFLTKDLHVHWHHGERYFMQKLVDGDYAANNGGWQW 398
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
SAS+GC +QP+FRIFNP Q ++FD G F+R ++ +LS + NKYIH PW+ +
Sbjct: 399 SASTGCDAQPYFRIFNPTAQGERFDSDGDFVRHWISELSAVPNKYIHQPWRWEN------ 452
Query: 435 GIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
++ +YPKP+++H ++ L+ + K+
Sbjct: 453 --VISLSYPKPMVDHKSEREITLRLFQDAKD 481
>gi|424890665|ref|ZP_18314264.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393172883|gb|EJC72928.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 482
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 139/459 (30%), Positives = 244/459 (53%), Gaps = 20/459 (4%)
Query: 13 ILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAV 72
I +P G + + ++ S+ L +L+ L++ A + L+ + +AV
Sbjct: 40 IKEPAAHSGALGAAQAWWLHHSLEALDGSLRKRQGRLVLASGEALDVLGALISESGAEAV 99
Query: 73 MINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKW 132
N Y+P D IK EL+ + S+ Q++++ + ++ G PY +++ + +
Sbjct: 100 FWNRCYDPSGTAIDIRIKHELQKQAIEARSFGGQLLYDPSRLMTGGGTPYRVYTPFWRA- 158
Query: 133 IEKVKSNKCYLQSYPVKSYLN-NLVHSSKLH--KIINNNIISLNDLGFCKSNLSSLGIKT 189
+E + +++ P K L L S +L K++ D G +
Sbjct: 159 LEGAGEPERPVEA-PAKLRLAAQLPKSERLESWKLLPTKPDWARDFGDLWT--------P 209
Query: 190 GASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G GA+ L +F++ + Y NR+YP+ TS LS HL G IS ++ K+
Sbjct: 210 GEQGAREKLRSFVEDGLDGYKENRDYPAKQATSLLSPHLALGEISPARIWDATRGLSKRM 269
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
D + + ++ WR+F +L+ +P + + ++ +D W +D+ +F W +
Sbjct: 270 PAADILHF---RKEIAWREFSYHLLFHFPRLASDNWNARFDGFKWRNDD---DDFAAWRR 323
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TGYP++D+ + QL G+MHNR+RM+ ASFLIK++ ++W+ GE +F + L D D A+N
Sbjct: 324 GMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKDLMVDWRRGEAWFRDTLVDADPANN 383
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
+WQW A SG + PFFRIFNP++Q + FD +G ++R YLP+L +L+ YIH P++A
Sbjct: 384 AASWQWVAGSGADASPFFRIFNPVLQGQTFDPRGDYVRTYLPELRELAANYIHRPFEAPE 443
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
L+ AGIILG+ YP+PI++H+ ++ L Y+ K+ +
Sbjct: 444 SVLDSAGIILGQTYPRPIVDHASARNRALAAYDVTKHAV 482
>gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
Length = 481
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 225/401 (56%), Gaps = 26/401 (6%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKEL--KVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
+DA+ N YE + RD+ +L + I C S+ D V+ + + Y IF
Sbjct: 96 QVDALFYNQQYELNEMRRDEAFTVQLNRRSIACH--SFHDSVLLPPGSVQTGNNEMYKIF 153
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+ +++ +I+++ + C +S P N + + L + + ++ S
Sbjct: 154 TPFRRAFIQRLMMSDC--RSVPAPKARQNAGAIT---------LTPLEPFDYPQQSVDSQ 202
Query: 186 GIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
G A L +F + ++++Y R+ P++ GTS LS +L G +S R+ +
Sbjct: 203 LFPAGEEAALQRLRSFCREQVQDYLQQRDLPAVAGTSGLSPYLALGILSPRQCFNRLRAE 262
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNF 303
++ G FTWL++LIWR+FY+ +L YP + + F D + W N+++
Sbjct: 263 CPDLLESSDSGAFTWLNELIWREFYRHLLVAYPRLCQHHPFMGWTDAVRW---NHSEPQL 319
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
+ W +G TGYP++D+A+ QLN +G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D
Sbjct: 320 IAWQQGLTGYPIVDAAMRQLNETGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLLDG 379
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
DLA+NNG WQW+AS+G + P+FRIFNP Q ++FD +G FIR++LP+L+ + ++ IH P
Sbjct: 380 DLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTFIRRWLPELAAVPDRDIHQP 439
Query: 424 WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
W+ + + + NYP P+++H L++ L ++ K
Sbjct: 440 WRWAQQQQQHL------NYPPPLVDHKLARLATLAAFDAAK 474
>gi|418253998|ref|ZP_12878900.1| deoxyribodipyrimidine photolyase [Shigella flexneri 6603-63]
gi|397900751|gb|EJL17107.1| deoxyribodipyrimidine photolyase [Shigella flexneri 6603-63]
Length = 472
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 242/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEIGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCENGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP+I
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPII 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|420263503|ref|ZP_14766140.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
gi|394769460|gb|EJF49316.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
Length = 473
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 223/387 (57%), Gaps = 30/387 (7%)
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS--NKCY 142
RD IK+ ++ G S+++ + + E+ + G Y F+ Y KKWI+ K K
Sbjct: 109 RDLYIKELVEKKGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQA 168
Query: 143 LQSYPVKSYLNNLVH----SSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
L + ++ N+ H ++ L K++ N K++ S++ G A L
Sbjct: 169 L-DFEKAAHFNDAPHFKAGTALLAKLLKNR----------KTDFSTI---VGEDYAHKQL 214
Query: 199 NNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F+ K++ Y +R+ PSI GTS LS L FG +SIRK+ + G
Sbjct: 215 QAFVQKRLAAYEKDRDLPSIKGTSRLSPFLSFGQLSIRKV------WAACQGMPPSTGKA 268
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
T+L +L WRDFY MI + +P N ++Y N+ W+ D A F W G TGYP+ID
Sbjct: 269 TFLKELAWRDFYHMIYFTHPEQKNYELIEKYRNMDWQKDEEA---FNKWQAGQTGYPIID 325
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+ GE YFA +L D+D ASN G WQW+AS
Sbjct: 326 AAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAAS 385
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G + P+FRIFNPI Q KKFD +G FI++++P+L++L K+IH P+ + + ++
Sbjct: 386 TGTDAVPYFRIFNPITQGKKFDKEGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVV 445
Query: 438 LGKNYPKPILEHSLSKKNILKRYNFIK 464
LG +YP PI++H+ ++K L Y+ I+
Sbjct: 446 LGTDYPLPIVDHNEARKRALDLYSKIE 472
>gi|420239237|ref|ZP_14743574.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
gi|398081725|gb|EJL72497.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
Length = 477
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/438 (33%), Positives = 237/438 (54%), Gaps = 21/438 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L++ DLI A + LV K N V +N YE + D+ I
Sbjct: 58 WLHHSLAALKASLKSLSGDLIFISGKAEDVLTDLVRKTNAKTVFVNRAYE--RTLFDRGI 115
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
ELK ++ Q++ E I G + +F+ + ++KV + + P K
Sbjct: 116 AIELKKHDIAIRAFHGQLLHEPKSIRTGAGNAFKVFTPFWNA-LQKVGEPQEPTDA-PTK 173
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG--IKTGASGAKILLNNFIKK-IK 206
S H ++ N+ L + G G +GA+ L + + + ++
Sbjct: 174 I-------PSPEHFPLSENLDHWALLPKKPDWAADFGRMWTPGEAGAQEKLADVVDRDLQ 226
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWR 266
+Y R+ PS++ TS LS HL G +S ++ + K ++ + +F +L WR
Sbjct: 227 DYKRGRDLPSVHATSLLSPHLAHGEVSPARIWHAVRGLPPK--ASEDVAHFR--RELAWR 282
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
DF +L +P + ++++ +D WE Y K F W G TGYP++D+ + QL +
Sbjct: 283 DFCYNLLAEFPKLHDRNWDDRFDGFKWE---YDAKEFSAWTMGLTGYPIVDAGMRQLWRT 339
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
G+MHNR+RM+TASFLIK++ I+W+ GE +F + L D D A+N+ NWQW A SG + PFF
Sbjct: 340 GFMHNRVRMITASFLIKDLMIDWRRGERWFRDTLVDADPANNSANWQWVAGSGADASPFF 399
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
RIFNP++Q +KFD G ++R+++P+L++L KY+H P++A + LEKAGI LGK YPKPI
Sbjct: 400 RIFNPVLQGEKFDPDGDYVREHVPELARLDRKYVHKPFEAPEHVLEKAGIELGKTYPKPI 459
Query: 447 LEHSLSKKNILKRYNFIK 464
++H+ ++ L Y I+
Sbjct: 460 VDHAFARDRALAAYRDIR 477
>gi|156976349|ref|YP_001447255.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
gi|156527943|gb|ABU73028.1| hypothetical protein VIBHAR_05122 [Vibrio harveyi ATCC BAA-1116]
Length = 471
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 246/452 (54%), Gaps = 34/452 (7%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+ + + + +L+I L + + +++ + IK + LN +VM
Sbjct: 44 MAPMQADLIA--RRLVHLDEELADLNIPLLYKE---VPKFSDVTGVIKGWALSLNAKSVM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
N YE D+ I L F ++ D+ + +LNK G+ + +F+ +++ W+
Sbjct: 99 ANIHYEVNEQALDREIADVLAKSQVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWL 158
Query: 134 EKVKS---NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTG 190
K + +K Q+ ++ L + + H D+ F SS
Sbjct: 159 LKFQMPMVSKPQPQAEILQEATQPL-EADRYHA----------DVPFTYPRESSEQWFVS 207
Query: 191 ASGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHY 249
S L F ++ + Y R+ PS++GTS LS +L G +S R+ + ++
Sbjct: 208 TSDIVHHLREFARERSDAYQEKRDLPSVDGTSQLSPYLAIGALSPRQCIARLYAENPHTD 267
Query: 250 KTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCK 308
TD G TWLS++IWR+FYQ +L P +V K F D I W D A F W
Sbjct: 268 LTD--GKATWLSEIIWREFYQHLLVFEPKLVKGKGFIPWEDKIEWSYDEAA---FERWKT 322
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TGYP++D+A+ QLN++G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D A+N
Sbjct: 323 GTTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTKDLHIDWRWGEAYFMSKLVDGDFAAN 382
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
NG WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ ++ NK+IH+PW S
Sbjct: 383 NGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGAFVRYWVPEIKQVPNKFIHNPWLWSG 442
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+ L +Y KP+++H + ++ L+ +
Sbjct: 443 FNL--------LDYHKPMVDHKVEREITLRLF 466
>gi|119944756|ref|YP_942436.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
gi|119863360|gb|ABM02837.1| deoxyribodipyrimidine photo-lyase type I [Psychromonas ingrahamii
37]
Length = 453
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 156/444 (35%), Positives = 241/444 (54%), Gaps = 45/444 (10%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FI +++ L+ L L+I ++ +K++ +I+ + N + E
Sbjct: 47 QADFIEQNLKVLAEELAALGIPLLIEEVADFSHIPARLKQIQKDHHINTIHANDEPEINE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ +KK G Y+ I + +L K G Y +F+ ++ W+++VK
Sbjct: 107 KERDQAVKK----AGLPLVLYQCDCILQAGSVLTKQGGMYKVFTAFRNAWMKEVKQTDLT 162
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
P + V SK IS+N SS G + A L +F+
Sbjct: 163 PLPKPADQMPSLNVSWSK--------NISVN-----YDKKSSQAWPAGETAALRRLRHFL 209
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ I++Y+ NR+ PS++GTS LS +L+FG IS ++ V + F+W++
Sbjct: 210 LQDIEDYHHNRDIPSLDGTSGLSAYLKFGVISAKRCVYEVLAAFPDALDAQDSSVFSWIN 269
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+++WR+FY+ ++ P + K+F K DNI W ++ +F WC+G TGY L+D+A+
Sbjct: 270 EIVWREFYRHLMIFNPQLCKGKNFNKLADNITWSNN---PDDFKAWCEGRTGYGLVDAAM 326
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QLN +G+MHNRLRMVTASFL K++ I+W+WGE YF L D DLASNNG WQW+AS+GC
Sbjct: 327 RQLNQTGWMHNRLRMVTASFLTKHLLIDWRWGEAYFREHLIDGDLASNNGGWQWAASTGC 386
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
+QP+FRIFNPIIQS+KFD +G+FIRKY+ +L+ NK IH P A
Sbjct: 387 DAQPYFRIFNPIIQSQKFDPKGLFIRKYVKELNGFDNKKIHFPVNA-------------- 432
Query: 441 NYPKPILEHSLSKKNILKRYNFIK 464
I+EH ++ N L RY+ +K
Sbjct: 433 -----IVEHKQARLNALDRYSVLK 451
>gi|410646443|ref|ZP_11356894.1| deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica NO2]
gi|410134049|dbj|GAC05293.1| deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica NO2]
Length = 438
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 239/431 (55%), Gaps = 23/431 (5%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
+R+ + + + E +INLQ D Y +++ +L +K ++ V N +YE R
Sbjct: 11 QRLVSLQEELKERNINLQVMDGG---NYETLPEKLTELCVKNHVTHVYCNAEYEWDERQR 67
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
D +K L + F ++ D + + EI+N +PY +F+ Y K+W+E L
Sbjct: 68 DASVKNSLNKMDVAFATFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLEMTLRQ---LPG 124
Query: 146 YPVKSYLNN--LVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK 203
P K N+ L HS ++ I + I N +G S+ + AS +N FI
Sbjct: 125 VPEKCSANDTGLKHSEDDNQYIESLISKTNRVGTGDSDAPNW--PATASEITKKMNGFII 182
Query: 204 KI-KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
+ +Y NR+ PSI GTS +S +L G +S R+ + + + + + G +TW+ +
Sbjct: 183 EFSPDYPKNRDIPSIEGTSKISPYLSIGALSPRQCLFHVLQEYGEDALSPEHGAYTWVKE 242
Query: 263 LIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+ WRDFY+ +++ +P+V F+K Y WE++ +++F W G TGYP++D+A+I
Sbjct: 243 IAWRDFYRYVMFHFPHVSRGLPFQKHYQYFKWENN---QQHFDAWKAGETGYPIVDAAMI 299
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
L +G+MHNRLRM+ ASF K++ + WKW E+YF ++L D D ASNNG WQWSAS G
Sbjct: 300 ALKQTGWMHNRLRMIVASFYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTD 359
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ P+FRIFNP QS++FD QG FI+ +LPQL+ LS K +H P K +++ G L
Sbjct: 360 AAPYFRIFNPTTQSERFDPQGEFIKTWLPQLAHLSPKQVHEPSKHCD--VQRLGYAL--- 414
Query: 442 YPKPILEHSLS 452
PI+EH S
Sbjct: 415 ---PIVEHKAS 422
>gi|424032472|ref|ZP_17771889.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HENC-01]
gi|408875530|gb|EKM14674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HENC-01]
Length = 471
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 227/414 (54%), Gaps = 29/414 (7%)
Query: 50 IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIF 109
+ +A ++ I L+ VM N YE D+ + L + G F ++ D+ +
Sbjct: 75 VPEFADVTEVINDWATSLSAQRVMANIHYEVNEQALDREVSHALSIRGIAFDTFHDKCVH 134
Query: 110 EKNEILNKTGKPYSIFSFYQKKWIEKVK---SNKCYLQSYPVKSYLNNLVHSSKLHKIIN 166
+LNK G+ + +F+ +++ W+ K + ++K Q+ S + + + H
Sbjct: 135 APTTVLNKQGEYFKVFTPFKRAWLAKFQMPVASKPEPQAELSPSTIQP-IQPDRYH---- 189
Query: 167 NNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSI 225
+ + F SS S L F + + Y R+ PS++GTS LS
Sbjct: 190 ------DGVAFSYPRESSKRWFAATSDIVQHLREFARDRSDAYQAERDIPSVDGTSQLSP 243
Query: 226 HLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSF 284
+L G +S R+ + ++ +D G TWLS++IWR+FYQ +L P +V + F
Sbjct: 244 YLAIGALSPRQCIARLYAESPMVDLSD--GKATWLSEIIWREFYQHLLVFEPKLVKGRGF 301
Query: 285 KKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKN 344
D I W +Y ++ F W G TGYP++D+A+ QLN++G+MHNRLRM+ ASFL K+
Sbjct: 302 IAWEDKIQW---SYDEQAFERWKAGNTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTKD 358
Query: 345 MGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIF 404
+ I+W+WGE YF +KL D D A+NNG WQWSAS+GC QP+FRIFNPI Q +KFD G F
Sbjct: 359 LHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGTF 418
Query: 405 IRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILK 458
+R ++P++ ++ NK+IH+PW S + L +Y KP+++H + ++ L+
Sbjct: 419 VRHWVPEIKQVPNKFIHNPWLWSGFNL--------LDYHKPMVDHKVEREITLR 464
>gi|417706215|ref|ZP_12355278.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri VA-6]
gi|420329812|ref|ZP_14831516.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-1770]
gi|333007384|gb|EGK26864.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri VA-6]
gi|391259019|gb|EIQ18100.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-1770]
Length = 472
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 242/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCENGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP+I
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPII 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYETAR 469
>gi|110668379|ref|YP_658190.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
gi|109626126|emb|CAJ52578.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
Length = 478
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 246/463 (53%), Gaps = 28/463 (6%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VFIFD N L+ G + R++++ +SI EL ++ DSDL+I + +L
Sbjct: 39 VFIFDDNALE---HDG---NARVQYMLESIAELRSWYRDRDSDLLIARGDPVSILPELAS 92
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
++D V+ N +Y A RD+ + L S +D + FE I G+PYS++
Sbjct: 93 THDVDRVVWNREYSGFAQSRDQQVADALTEHDIAHCSVRDSIFFEPGSITTNKGEPYSVY 152
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+++ KKW ++ K+ P+ + ++ + I +++ +++ LGF +
Sbjct: 153 TYFWKKWRDREKNA-------PIDAPDADMFVPDEG---IGDSLPTIDSLGFEEPTADIQ 202
Query: 186 GIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
G + A+ L++F I Y+ +R+YPS + S LS L FGTI +R +
Sbjct: 203 --PAGTNAARNRLSDFCADGIYRYDDDRDYPSRDAVSRLSADLSFGTIGVRDVHAATVAA 260
Query: 245 IKKHYKTDCIGYFT--WLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+ TD + SQL WR+FY +LY P VV +++K + I W D A
Sbjct: 261 AEVDGITDAEAESVEEFQSQLAWREFYTHVLYFNPEVVTENYKSYENGIQWRDDPAA--- 317
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
W G TGYP++D+ + QL S YMHNRLRM+ ASFL K++ I+W+ G +F L D
Sbjct: 318 LQAWKDGETGYPIVDAGMRQLKSEAYMHNRLRMIVASFLTKDLLIDWREGYGHFRQYLAD 377
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
++A+NNG WQW+AS+G +QP+FRIFNP+ Q +++D +I++Y+P+L ++ IH
Sbjct: 378 HNIANNNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKQYVPELREVPADTIHE 437
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
W S E+A L +YP PI++HS ++ L+ + +
Sbjct: 438 -WHELS-PTERA--RLDTDYPAPIVDHSKQREKALEMFETARG 476
>gi|209917958|ref|YP_002292042.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
gi|293432976|ref|ZP_06661404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
gi|300823005|ref|ZP_07103140.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
gi|331667072|ref|ZP_08367937.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
TA271]
gi|331676388|ref|ZP_08377085.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H591]
gi|417224714|ref|ZP_12028005.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.154]
gi|417268307|ref|ZP_12055668.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.3884]
gi|417601042|ref|ZP_12251624.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_94C]
gi|418042784|ref|ZP_12680971.1| FAD binding domain of DNA photolyase [Escherichia coli W26]
gi|419390104|ref|ZP_13930941.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15A]
gi|419395276|ref|ZP_13936059.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15B]
gi|419400630|ref|ZP_13941361.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15C]
gi|419405803|ref|ZP_13946505.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15D]
gi|419411294|ref|ZP_13951965.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15E]
gi|419952321|ref|ZP_14468492.1| deoxyribodipyrimidine photolyase [Escherichia coli CUMT8]
gi|422351612|ref|ZP_16432424.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3]
gi|423708633|ref|ZP_17683011.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B799]
gi|432375819|ref|ZP_19618828.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE12]
gi|432480087|ref|ZP_19722050.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE210]
gi|432830684|ref|ZP_20064268.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE135]
gi|432833730|ref|ZP_20067273.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE136]
gi|432966809|ref|ZP_20155726.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE203]
gi|209911217|dbj|BAG76291.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
gi|291323795|gb|EFE63217.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
gi|300524546|gb|EFK45615.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
gi|324020349|gb|EGB89568.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3]
gi|331065428|gb|EGI37321.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
TA271]
gi|331075881|gb|EGI47178.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H591]
gi|345353048|gb|EGW85284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_94C]
gi|378242867|gb|EHY02815.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15A]
gi|378250753|gb|EHY10656.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15B]
gi|378250935|gb|EHY10836.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15C]
gi|378257086|gb|EHY16928.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15D]
gi|378260971|gb|EHY20768.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15E]
gi|383474279|gb|EID66271.1| FAD binding domain of DNA photolyase [Escherichia coli W26]
gi|385707354|gb|EIG44385.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B799]
gi|386199762|gb|EIH98753.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.154]
gi|386230665|gb|EII58020.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.3884]
gi|388412776|gb|EIL72813.1| deoxyribodipyrimidine photolyase [Escherichia coli CUMT8]
gi|430900924|gb|ELC22938.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE12]
gi|431009754|gb|ELD24364.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE210]
gi|431379712|gb|ELG64637.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE135]
gi|431387713|gb|ELG71535.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE136]
gi|431474001|gb|ELH53824.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE203]
Length = 472
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 243/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + +Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGDYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 KL--DYPQPIVDHKEARLRTLAAYE 466
>gi|417665850|ref|ZP_12315412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_O31]
gi|422775474|ref|ZP_16829130.1| DNA photolyase [Escherichia coli H120]
gi|433091036|ref|ZP_20277334.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE138]
gi|323947030|gb|EGB43044.1| DNA photolyase [Escherichia coli H120]
gi|397786401|gb|EJK97237.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_O31]
gi|431614035|gb|ELI83199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE138]
Length = 472
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 243/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + +Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGDYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 KL--DYPQPIVDHKEARLRTLAAYE 466
>gi|24112014|ref|NP_706524.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 301]
gi|30062127|ref|NP_836298.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 2457T]
gi|384542191|ref|YP_005726253.1| Deoxyribodipyrimidine photolyase [Shigella flexneri 2002017]
gi|415855606|ref|ZP_11530895.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2a str. 2457T]
gi|417721617|ref|ZP_12370462.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-304]
gi|417727019|ref|ZP_12375763.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-671]
gi|417732137|ref|ZP_12380807.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2747-71]
gi|417742117|ref|ZP_12390668.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2930-71]
gi|420340256|ref|ZP_14841781.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-404]
gi|24050832|gb|AAN42231.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
flexneri 2a str. 301]
gi|30040372|gb|AAP16104.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
flexneri 2a str. 2457T]
gi|281599976|gb|ADA72960.1| Deoxyribodipyrimidine photolyase [Shigella flexneri 2002017]
gi|313649656|gb|EFS14080.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2a str. 2457T]
gi|332761188|gb|EGJ91474.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2747-71]
gi|332763978|gb|EGJ94216.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-671]
gi|332768197|gb|EGJ98382.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2930-71]
gi|333021492|gb|EGK40742.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-304]
gi|391273445|gb|EIQ32270.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-404]
Length = 472
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 242/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCENGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP+I
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPII 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|296448539|ref|ZP_06890415.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
gi|296253957|gb|EFH01108.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
Length = 477
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 135/451 (29%), Positives = 231/451 (51%), Gaps = 32/451 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ +FI D++ PL ++ S++ L+ +L+ L +R ++ + +
Sbjct: 31 LVALFILDEDDDPPLGGAARW------WLHHSLVSLTHDLRERGLSLTLRRGPSAASLTR 84
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
LV + AV + YEP A+ RD I+ L+ G + S+ ++FE EI + G+ +
Sbjct: 85 LVPETGARAVFWSRVYEPAALRRDGEIETMLRASGVEAQSFSGALLFEPGEIRSAQGRAF 144
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + + + P + ++L L D G
Sbjct: 145 RVFAPFWRA------AQAIVAPGAPKPA-------PTRLRAAPAPRSERLEDWGLTPREP 191
Query: 183 SSLG-----IKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
G + G SGA+ L+ F++ +++Y R++P+ + S LS HL +G I R+
Sbjct: 192 DWAGGLRDAWRPGESGARARLDAFVEDGVRDYAAARDFPAKDNVSRLSPHLHWGEIGPRQ 251
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ + I + D + L +L WR+F IL +P++ ++ W D
Sbjct: 252 VWRAIEG--ADAPRADIAAF---LRELGWREFCHHILLDHPSLPEAPLDPDFARFPWAQD 306
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
+ F W +G TGYP +D+ + QL +G+MHNRLRM+ ASFL+K++ ++W+ GE +F
Sbjct: 307 D--GTLFRAWARGATGYPFVDAGMRQLWLTGWMHNRLRMIVASFLVKHLLLDWREGERWF 364
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
+ L D DL+SN NWQW+A G + P+FRIFNP++Q +K+D G F+R+++P+L++L
Sbjct: 365 FDTLVDADLSSNAFNWQWAAGCGADAAPYFRIFNPVLQGEKYDADGAFVRRFVPELARLD 424
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPIL 447
YIH PW A KL +AG+ LG+ YP I+
Sbjct: 425 AHYIHRPWTAPEQKLREAGVRLGETYPLAII 455
>gi|410663651|ref|YP_006916022.1| deoxyribodipyrimidine photo-lyase [Simiduia agarivorans SA1 = DSM
21679]
gi|409026008|gb|AFU98292.1| deoxyribodipyrimidine photo-lyase [Simiduia agarivorans SA1 = DSM
21679]
Length = 437
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 237/442 (53%), Gaps = 40/442 (9%)
Query: 29 EFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAII 84
+F+++S++ L L+ L + ++ ++ + KL ++L V+ + +
Sbjct: 23 DFVYRSVLALGQQLRELGITLHVLQVPLFSQCAEAVVKLALELGAGKVVWHREVGWDERQ 82
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQ 144
RD ++K D+++ +L G P+ +F+ Y+++W+E +K+
Sbjct: 83 RDLAVRKRCTQENLATEVLDDRLLVPPESVLTGGGTPFKVFTPYKRRWLEALKA------ 136
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLNNFIK 203
S + NL +N IS + G + + + G S A L F +
Sbjct: 137 -----SGVANLPKPRVQPGKVNAPTISRDAFGLSEDVPAMAALWPAGESEAHKRLVRFTR 191
Query: 204 -KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK---LIFKFIKKHYKTDCIGYFTW 259
++ Y R++P++ GTS LS +L G IS R+ L + H ++D W
Sbjct: 192 ERLMQYGEQRDFPALEGTSGLSPYLAVGAISARQCAHAWLLASEGDWHHPRSD-----VW 246
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
LS+L WRDFYQ I++ +P V N+ F ++ + W S A ++FL WC+G TG PL+D+
Sbjct: 247 LSELGWRDFYQYIMWHFPRVSRNQPFVEKTRQLAWRS---ADEDFLAWCQGRTGIPLVDA 303
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QL+++G+MHNRLRMV A FL KN+ ++W+ GE YF +L D D A+NNG WQWSAS+
Sbjct: 304 AMRQLHATGWMHNRLRMVVAMFLTKNLLVDWRRGEAYFMQQLVDGDFAANNGGWQWSAST 363
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G + P+FR+FNP+ QS++FD +G FIR +LP+L+ L NK IH P A L
Sbjct: 364 GTDAAPYFRVFNPVSQSQRFDPEGQFIRHWLPELAHLDNKQIHLPKPA-----------L 412
Query: 439 GKNYPKPILEHSLSKKNILKRY 460
+YP PI++ LS++ + +
Sbjct: 413 RGDYPAPIVDLKLSRQQAIDAF 434
>gi|110804662|ref|YP_688182.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
gi|417700631|ref|ZP_12349771.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218]
gi|417737461|ref|ZP_12386067.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70]
gi|417826662|ref|ZP_12473238.1| deoxyribodipyrimidine photolyase [Shigella flexneri J1713]
gi|420318976|ref|ZP_14820832.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2850-71]
gi|420370575|ref|ZP_14871118.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 1235-66]
gi|424837129|ref|ZP_18261766.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5a str. M90T]
gi|110614210|gb|ABF02877.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
gi|332760931|gb|EGJ91219.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70]
gi|333008008|gb|EGK27484.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218]
gi|335576862|gb|EGM63100.1| deoxyribodipyrimidine photolyase [Shigella flexneri J1713]
gi|383466181|gb|EID61202.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5a str. M90T]
gi|391254269|gb|EIQ13431.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2850-71]
gi|391320117|gb|EIQ77022.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 1235-66]
Length = 472
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 242/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCENGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP+I
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPII 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|336126045|ref|YP_004578001.1| deoxyribodipyrimidine photolyase [Vibrio anguillarum 775]
gi|335343762|gb|AEH35044.1| Deoxyribodipyrimidine photolyase [Vibrio anguillarum 775]
Length = 470
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 149/475 (31%), Positives = 259/475 (54%), Gaps = 43/475 (9%)
Query: 3 VYCVFI-----FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIR----Y 53
V VFI + K+ L P+++ + I++ + EL LQ + L+ Y
Sbjct: 28 VVAVFIATPAQWQKHHLAPMQA---------DLIYRRLFELQRELQALNIALLYEEVDDY 78
Query: 54 AIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNE 113
A A+++I + +LN AV++N +YE + RD++ + ++ +Y D+ I
Sbjct: 79 ADAAQQIATMAKQLNASAVLVNREYEINELQRDEMASQFCLERQIEWRAYDDKCIIAPGL 138
Query: 114 ILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN 173
+ NK G + +F+ +++ W+ + + + P+ ++ + L ++ + S
Sbjct: 139 VKNKQGDYFKVFTPFKRAWLSQAALPQ--ILPTPISAHYKRI---KDLEPLLWSEHRS-- 191
Query: 174 DLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTI 232
F +SS + L F + K++NY+ R++P+++ TS LS +L G +
Sbjct: 192 ---FSYPRISSDHWVVEFDAIRAKLRQFCRDKVQNYHQQRDFPALDSTSALSPYLAIGAL 248
Query: 233 SIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNI 291
S R+ + ++ + + G TWLS++IWR+FYQ ++ P++ K F ++
Sbjct: 249 SARQCMARLYA--ESQHIGLSEGAQTWLSEIIWREFYQHLIGFRPDLCKGKDFAPWGKHV 306
Query: 292 LWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKW 351
W ++ A F W +G TG+P++D+A+ QLN +G+MHNRLRMV ASFL K++ I+W+
Sbjct: 307 SWWENSTA---FERWQQGQTGFPIVDAAMRQLNKTGWMHNRLRMVVASFLTKDLHIDWRL 363
Query: 352 GENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQ 411
GE YF L D D ASNNG WQW AS+GC QP+FRIFNP Q ++FD +G FIR+++P+
Sbjct: 364 GEQYFMQTLVDGDYASNNGGWQWCASTGCDGQPYFRIFNPTSQGERFDPKGDFIRQWVPE 423
Query: 412 LSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
L+ L +KYIH+PWK + + +YP P+++H + ++ L+ Y K+
Sbjct: 424 LASLPDKYIHTPWKFPA--------VNSLSYPTPMVDHKVEREITLQLYKDAKDT 470
>gi|262372026|ref|ZP_06065305.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii
SH205]
gi|262312051|gb|EEY93136.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii
SH205]
Length = 480
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 244/451 (54%), Gaps = 32/451 (7%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEP 80
D +I+F + ++EL L L+I +I + + KL + V N ++
Sbjct: 49 DIKIDFYLRQLLELKTELSKLQIPLLIFTVPLWDDIAEFFVDLAEKLPFENVYANIEFGF 108
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
+ RD +++ L + ++D+ +F I ++ PY +F ++K ++++
Sbjct: 109 NELKRDNEVQQSLNRQKKQLILFQDRTLFPVASIRTQSNLPYQVFGAFKKSCYQRLELG- 167
Query: 141 CYLQSYPVKSYLNNL------VHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGA 194
Q YP+ L +H + L I N+ + D N S + G A
Sbjct: 168 -LPQCYPIPETQATLEFDFCQLHQTDLQNIQNHYADKIKD-----KNASEW--RVGEKHA 219
Query: 195 KILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
+ LLN F+ K+I YN R+YPS+ GTS LS +L G ISIR+ ++ F+ + +
Sbjct: 220 RNLLNQFVEKRIIQYNALRDYPSVKGTSQLSAYLNIGIISIRQCIQAAFRHQQGDFVIQS 279
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
G TWL++L+WR+FYQ IL+ +P V FK N+ W D+ + F W +G TG
Sbjct: 280 EGQQTWLNELLWREFYQHILFDFPQVSKHLPFKAATQNVQWRDDS---EGFEKWKRGQTG 336
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
P++D+ + QL S+G+MHNR+RM+ A FL KN+ I+W+ GE +F L D DLA+NNG W
Sbjct: 337 IPIVDAGMRQLLSTGWMHNRVRMICAMFLTKNLLIDWRKGEQWFMQNLIDGDLAANNGGW 396
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QW AS+G + P+FRIFNPI QS+KFD G++IR+++P+L++L K IH P+ ++
Sbjct: 397 QWCASTGTDAAPYFRIFNPISQSQKFDENGVYIRRWVPELTQLDAKRIHEPYAQNT---- 452
Query: 433 KAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
L +YP PI++ S++ ++ + +
Sbjct: 453 ----ALKLDYPHPIVDLKTSRERAIQAFQAL 479
>gi|397662777|ref|YP_006504315.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395126188|emb|CCD04368.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 154/447 (34%), Positives = 247/447 (55%), Gaps = 33/447 (7%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+I L +L +L++R + I +LV + N+++V N YEPQ I RDK I
Sbjct: 50 WLHHSLIALGKSLNQKGLNLVLRKGSPQEIIVELVAQHNVESVYWNRSYEPQVIARDKKI 109
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K L K S+ ++ E I NK G + +F+ Y K+ C
Sbjct: 110 KLALGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQ---------C-------- 152
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCK-------SNLSSLGIKTGASGAKILLNNFI 202
+ N+ L K I+ +DLG K + S G GA+ LN F+
Sbjct: 153 RQILNIPSPFMLTKRPRGIEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLNEFV 212
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ Y +R++P+ N TS LS HL FG IS +++ + + K D +LS
Sbjct: 213 VHHLSGYKRDRDFPAKNATSRLSPHLHFGEISPWVILRAL-ELAKLEQTCDLASVEHFLS 271
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+L WR+F +LY +P + ++F+KE+D W++D ++ W KG TGYP+ID+ +
Sbjct: 272 ELGWREFSVYLLYHFPKLDCENFRKEFDAFPWQND---EQLLTCWQKGMTGYPIIDAGMR 328
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
+L ++GYMHNR+RM+ ASFL K++ I+W+ G +F + L D DLA+N+ +WQW A G
Sbjct: 329 ELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGAD 388
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ P+FRIFNP++QS+KFD G++IR+++P+L++L+++ IH PW + + + I LGK
Sbjct: 389 AAPYFRIFNPVLQSQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDA----DASSIFLGKK 444
Query: 442 YPKPILEHSLSKKNILKRYNFIKNILN 468
YPKPI++H ++ L Y IK ++
Sbjct: 445 YPKPIIDHQEARTKALSYYQQIKKGMD 471
>gi|257053940|ref|YP_003131773.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
gi|256692703|gb|ACV13040.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
Length = 470
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 143/467 (30%), Positives = 239/467 (51%), Gaps = 30/467 (6%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VF+FD +L+ G R+ + ++ L + SDL++ E+
Sbjct: 29 QVLGVFVFDPAVLE---HAGPA---RVVALLDAVAALREAYRERGSDLVLASGDPVAELP 82
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L + V N +Y P A RD ++ L G + D V+ E I G P
Sbjct: 83 TLATTYGAELVTWNREYSPLARDRDAAVRASLDDAGIGRDAVHDAVLHEPGTIRTNDGDP 142
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y +F+++ +KW ++ KS + P L ++ + + + DL +
Sbjct: 143 YQVFTYFWRKWRDRRKSAPI---APPDADSLGDVTDDTP--------VPTWADLDVEEPT 191
Query: 182 LSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
S G+ A A+ L++F I Y R+YP+ + TS LS HL++GTI IR +
Sbjct: 192 ASIPGVTPAA--ARERLDSFCAGDIYRYEDRRDYPAEDCTSRLSHHLKYGTIGIRAVYAA 249
Query: 241 IFKFIKK-HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ ++ D + SQL WR+FY +L+ P+VV ++FK + I W +D
Sbjct: 250 TERACERGETADDRASVREFQSQLAWREFYTQVLWFNPSVVTENFKSYENPIEWRTD--- 306
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ W G TGYP++D+ + QL ++ YMHNR+RM+ ASFL K++ I+W+ G ++F K
Sbjct: 307 PEGLQAWKDGETGYPIVDAGMRQLETAAYMHNRVRMIVASFLTKDLLIDWREGYDWFRAK 366
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D +IR+Y+P+L +
Sbjct: 367 LVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAAYIREYVPELDGVPADV 426
Query: 420 IHSPWKASSYKLEK-AGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IHS W ++L+ A + +YP PI++H+ ++ L + +
Sbjct: 427 IHS-W----HELDPGAREMHAPDYPAPIVDHADRREQALAMFERARG 468
>gi|386317413|ref|YP_006013577.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410495305|ref|YP_006905151.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417752618|ref|ZP_12400804.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|323127700|gb|ADX24997.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333771615|gb|EGL48541.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|410440465|emb|CCI63093.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 474
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 244/470 (51%), Gaps = 45/470 (9%)
Query: 5 CVFIFDKNILD--PLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
CVF F++ L P R+Q + + F + + E I+L DLI + ++++ +
Sbjct: 31 CVFQFNQEQLSQPPSRNQSAVVASVLAFK-EELKEKGIDLYVMHGDLITCFEQLAQQLDQ 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
V N+D RD+ + + +Y+D + EI N++G+ Y
Sbjct: 90 WT------DVYFNYDESGFGRRRDQQAAQWFRAKKINIHAYQDHYLHGSQEIKNQSGQYY 143
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPV------KSYLNNLVHSSKLHKIINNNIISLNDLG 176
IF+ Y + W +C + PV ++L+ + + L I + ND+
Sbjct: 144 KIFTPYYRVW-------QCLPKETPVVVDLSRGNWLSLKIPQATLELIETLKDTTFNDVM 196
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
K AK LN+F+ ++ +Y+ R++PS GTS+LS +LR G +SIR
Sbjct: 197 TVKE-------------AKERLNHFVDNQLADYDTTRDFPSRCGTSFLSPYLRLGMVSIR 243
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + + G +L +L WRDFY M+ PN + ++ + ++ W+
Sbjct: 244 TVYQAVSQ------APASSGQAVFLKELAWRDFYHMVYVANPNQKKLAIQEAFRHLEWDE 297
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ A F W +G TGYP+ID+A+ QL ++G+MHNRLRMV ASFL K++ I+W+ GE Y
Sbjct: 298 NPAA---FKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQIDWRLGEAY 354
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F +L D+D ASN G WQW+AS G + P+FRIFNP+ Q K+FD G FIR YLP L +
Sbjct: 355 FQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIRSYLPSLVSV 414
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
Y++ PWK E I+G++YP P+++H+ +K + RY + K
Sbjct: 415 PQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAEQRKRAIARYEWAKE 464
>gi|433459950|ref|ZP_20417586.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
gi|432192066|gb|ELK48979.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
Length = 474
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 142/433 (32%), Positives = 234/433 (54%), Gaps = 15/433 (3%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRD 86
R ++ F+++ ++ + + + L+ ID V N D RD
Sbjct: 50 RHDYFFQTLASFVEKAEDAGAPVHFITGDTEDAFENLIETAGIDMVYFNRDETGFGYERD 109
Query: 87 KLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSY 146
K ++K + + + Y D I +E+ + G Y +F+ Y KKW + K +
Sbjct: 110 KQVEKYVTSLDVDVYHYLDHHIHGADEVKKQDGGFYKVFTPYLKKWKQLPKPAVQKVDDE 169
Query: 147 PVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KI 205
+K + S K + +++ + F G+ G + A L F+ I
Sbjct: 170 LLKKAAVDERASFKEGESAYADLLEKIEADFG-------GV--GEADAWARLEQFLDADI 220
Query: 206 KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIW 265
+Y+ R++P+++GTS +S +LR G IS+R + I + KT+ G T++S+L W
Sbjct: 221 YDYDERRDFPAVDGTSLMSRYLRTGAISVRSVYHQIHDQVDFRKKTE--GVETYISELAW 278
Query: 266 RDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNS 325
RDFY MI + YPN ++ ++Y I W +D + W +G TG+P+ID+A+ QLN
Sbjct: 279 RDFYNMIYHFYPNAHDEEVVEKYQGIPWNND---EDVLERWKEGRTGFPIIDAAMRQLNE 335
Query: 326 SGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPF 385
SG+MHNRLRM ASFL K++ ++W+ GE YF KL D+D ASN G WQW+AS+G P+
Sbjct: 336 SGWMHNRLRMAVASFLTKDLLMDWRKGERYFQEKLVDYDPASNIGGWQWAASTGTDPVPY 395
Query: 386 FRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKP 445
FR+FNP QS++FD G FI+++LP+L + KYIH P K + EKA ++G++YP+P
Sbjct: 396 FRVFNPTRQSERFDPHGRFIKEWLPELRDVPKKYIHEPAKMPENEQEKAKCMIGEDYPEP 455
Query: 446 ILEHSLSKKNILK 458
+++H ++ ++
Sbjct: 456 LVDHKRMRERAIQ 468
>gi|153831640|ref|ZP_01984307.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
gi|148872150|gb|EDL70967.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
Length = 471
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 152/452 (33%), Positives = 247/452 (54%), Gaps = 34/452 (7%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+ + + + +L+I L + + +++ ++ IK + LN +VM
Sbjct: 44 MAPMQADLIA--RRLVHLNEELADLNIPLLYKE---VPKFSNVTEVIKDWALSLNAKSVM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
N YE D+ + L F ++ D+ + +LNK G+ + +F+ +++ W+
Sbjct: 99 ANIHYEVNEQALDREVADVLAKSQVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWL 158
Query: 134 EKVKS---NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTG 190
K + +K Q+ + + L + + H D+ F SS
Sbjct: 159 LKFQMPMVSKPEPQAEIPQEAIQPL-EADRYHA----------DVPFTYPRESSDQWYVS 207
Query: 191 ASGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHY 249
S L F ++ + Y R+ PS++GTS LS +L G +S R+ + ++
Sbjct: 208 TSDIVHHLREFARERSDAYQEKRDLPSVDGTSQLSPYLAIGALSPRQCIARLYAENPHTD 267
Query: 250 KTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCK 308
TD G TWLS++IWR+FYQ +L P +V K F D I W D A F W
Sbjct: 268 LTD--GKATWLSEIIWREFYQHLLVFEPKLVKGKGFIPWEDKIEWSYDEAA---FERWKT 322
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TGYP++D+A+ QLN++G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D A+N
Sbjct: 323 GTTGYPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLHIDWRWGEAYFMSKLVDGDFAAN 382
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
NG WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ ++ NK+IH+PW S
Sbjct: 383 NGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGTFVRYWVPEIKQVPNKFIHNPWLWSG 442
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+ L +Y KP+++H + ++ L+ +
Sbjct: 443 FNL--------LDYHKPMVDHKVEREITLRLF 466
>gi|300918366|ref|ZP_07134966.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1]
gi|432532859|ref|ZP_19769854.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE234]
gi|300414429|gb|EFJ97739.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1]
gi|431063208|gb|ELD72458.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE234]
Length = 472
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 150/448 (33%), Positives = 241/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 TL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|443328462|ref|ZP_21057059.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
gi|442791916|gb|ELS01406.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
Length = 474
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 251/462 (54%), Gaps = 34/462 (7%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
++V VF D++IL ++ I R++++ + ELS + S L+I S+ I
Sbjct: 29 VKVVGVFCLDRDIL----TRDDIAPARVKYMMGCLQELSQSYGQIGSQLLITQGTPSQVI 84
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
+L L+ AV N D EP A RD+ + L+ ++ DQ++ +L ++ +
Sbjct: 85 PQLASTLSAKAVYWNLDVEPYARKRDREVTIALQDKDITVQNFWDQLLHPPGAVLTQSEQ 144
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSY----LNNLVHS--SKLHKIINNNIISLND 174
PY +++ + + W LQ P S L L + + + +I + + + D
Sbjct: 145 PYKVYTPFWRNW---------SLQDKPTISPQIKNLQGLTATELATVDQIYVSELPTAED 195
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTIS 233
LG+ S + L + G + A+ L F I Y+ RN+P GTS LS L+FG IS
Sbjct: 196 LGY--SWETPLLLAPGETAAQARLEEFSHSAIYQYDEQRNFPFNQGTSLLSAALKFGVIS 253
Query: 234 IRKLVKLIFKFIKKHYKTDC-IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNIL 292
+R + + + ++ + + TW +L WR+FYQ LY +P + ++ + N
Sbjct: 254 LRAIWQTTVEALENCRSEEARVNVITWQKELAWREFYQHCLYFFPELEQGPYRPAFKNFP 313
Query: 293 WESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWG 352
W+++ ++F WC+G TGYP++D+A+ QL S+G+MHNR RM+ ASFL K++ I+W+WG
Sbjct: 314 WDNN---PEHFQAWCQGKTGYPIVDAAMRQLQSTGWMHNRCRMIVASFLTKDLIIDWRWG 370
Query: 353 ENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQL 412
E YF L D DLASNNG WQWSASSG +P RIFNP Q++KFD + +IR++LP++
Sbjct: 371 EKYFMQTLFDGDLASNNGGWQWSASSGMDPKP-LRIFNPASQAQKFDSEAEYIRQWLPEI 429
Query: 413 SKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKK 454
S + +Y+ + +LE+ NYP+ I++H + ++
Sbjct: 430 SSIDTEYLVT---GKIPELERYRC----NYPQQIVDHKIQQR 464
>gi|170017540|ref|YP_001728459.1| deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
gi|169804397|gb|ACA83015.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
Length = 478
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 152/463 (32%), Positives = 249/463 (53%), Gaps = 29/463 (6%)
Query: 13 ILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL-NIDA 71
I+DP + + + F F S NL N + L++ + +KL L I
Sbjct: 36 IVDPEQIETTASLNQSAF-FASAKAFQANLANENIHLLVLKGTPESQFEKLTAALPEISD 94
Query: 72 VMINHDYEPQAIIRDKLIKKELKV-IGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
+ N D RD+ + + +G K +Y D + NEI G Y IF+ Y K
Sbjct: 95 LYFNFDERGYGRQRDQQVAHHCQTTLGLKTHAYIDYNLHSANEIKKADGAGYQIFTPYFK 154
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSS-----L 185
+WI K PVK+ + +L + ++ N + L+ G S ++ L
Sbjct: 155 RWITLPKPT-------PVKASVTSL----QGKQMANIEPLHLHQEGLLTSLINEKHDKQL 203
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G + A L +FI+ + Y+ R+ P ++ TS+LS +LR G I+IR + + +
Sbjct: 204 VGQVGEAKALQTLKDFIQSHLSEYDTQRDLPFLDATSHLSRYLRTGEIAIRTIYQAVIN- 262
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFL 304
+ + G T++ +L WRD+Y MI P +S + E+ I W +++ +FL
Sbjct: 263 -----EPESEGQQTFIKELAWRDYYNMIYAMNPQQNTQSLRPEFQKIAWRNNH---NDFL 314
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W G TG+P++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D+D
Sbjct: 315 LWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRWGEQYFHDQLLDYD 374
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
ASN G WQW+AS+G S P+FRIFNP QS+KFD G FI++++P+LS+++N IH P
Sbjct: 375 PASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFDPDGKFIKQFVPELSQITNDKIHEPQ 434
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+ + ++ + L K+YPKP++ H ++ ++ Y K+ +
Sbjct: 435 LLTDLEQKEFQVTLDKDYPKPMVTHKQARLRAIEVYEQSKDTV 477
>gi|290892787|ref|ZP_06555778.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J2-071]
gi|404407050|ref|YP_006689765.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2376]
gi|290557599|gb|EFD91122.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J2-071]
gi|404241199|emb|CBY62599.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2376]
Length = 467
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 222/397 (55%), Gaps = 24/397 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + S+ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNLDETGYGAKRDEAAQAFFDEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K P K L K I ++ + F + + +
Sbjct: 148 KKWREEIKET-------PFKVTL-------KPENIWKESLFPKYEEQFAEMTCDLPILDS 193
Query: 190 GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L NFIK I +Y+ R++P ++ TS+LS +LR G ISIR I++ +++
Sbjct: 194 GERAANTRLANFIKHDIADYDKARDFPELDKTSHLSRYLRTGEISIR----TIWQELQET 249
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ G T+ +L WRDFY MI +PN N+ ++ Y I WE++ ++ F W +
Sbjct: 250 EATE--GRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKAWQE 304
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE YF L D+D ASN
Sbjct: 305 GKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASN 364
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP QS+KFD FIRKY+ +L+ L +KYIH P K S
Sbjct: 365 IGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIRKYVKELANLPDKYIHQPEKMSE 424
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ G++LGK+YP P+++H +K + RY F K
Sbjct: 425 TEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKE 461
>gi|408402028|ref|YP_006859992.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407968257|dbj|BAM61495.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 474
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 244/470 (51%), Gaps = 45/470 (9%)
Query: 5 CVFIFDKNILD--PLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
CVF F++ L P R+Q + + F + + E I+L DLI + ++++ +
Sbjct: 31 CVFQFNQEQLSQPPSRNQSAVVASVLAFK-EELKEKGIDLYVMHGDLITCFEQLAQQLDQ 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
V N+D RD+ + + +Y+D + EI N++G+ Y
Sbjct: 90 WT------DVYFNYDESGFGRRRDQQAAQWFRAKKINIHAYQDHYLHGSQEIKNQSGQYY 143
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPV------KSYLNNLVHSSKLHKIINNNIISLNDLG 176
IF+ Y + W +C + PV ++L+ + + L I + ND+
Sbjct: 144 KIFTPYYRVW-------QCLPKETPVVVDLSRGNWLSLKIPQATLELIETLKDTTFNDVM 196
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
K AK LN+F+ ++ +Y+ R++PS GTS+LS +LR G +SIR
Sbjct: 197 TVKE-------------AKERLNHFVDNQLADYDTTRDFPSRCGTSFLSPYLRLGMVSIR 243
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + + G +L +L WRDFY M+ PN + ++ + ++ W+
Sbjct: 244 TVYQAVSQ------APASSGQAVFLKELAWRDFYHMVYVANPNQKKLAIQEAFRHLEWDE 297
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ A F W +G TGYP+ID+A+ QL ++G+MHNRLRMV ASFL K++ I+W+ GE Y
Sbjct: 298 NPAA---FKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQIDWRLGEAY 354
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F +L D+D ASN G WQW+AS G + P+FRIFNP+ Q K+FD G FIR YLP L +
Sbjct: 355 FQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIRSYLPSLVSV 414
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
Y++ PWK E I+G++YP P+++H+ +K + RY + K
Sbjct: 415 PQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAEQRKRAIARYEWAKE 464
>gi|403053142|ref|ZP_10907626.1| deoxyribodipyrimidine photolyase [Acinetobacter bereziniae LMG
1003]
Length = 476
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 247/450 (54%), Gaps = 35/450 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+F + I L L + LII+ + + E+ +L KLNI+ + N +
Sbjct: 49 KIDFYLRQIEVLQHALTKLNIPLIIQTIPLWENIATEVTQLCQKLNIENIHANIECGVNE 108
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEK--VKSNK 140
+ RD ++K L G Y D+ +F I NK+ +PY +F ++K E+ + +
Sbjct: 109 LNRDFDVQKRLNKNGHDLILYHDRTLFPVGSIRNKSNQPYQVFGAFKKYCYEQLSISVPQ 168
Query: 141 CY----LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF-CKSNLSSLGIKTGASGAK 195
CY +QS + Y ++L N + ++ LGF C + + G + A
Sbjct: 169 CYPAPEIQSLDMSIYKDDL-----------NPLPTIKTLGFECVEKNAKTQWQVGEAHAW 217
Query: 196 ILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI 254
LL+ F+ I+NY ++R++P++ TS LS +L G ISIR+ + +F+ + + I
Sbjct: 218 HLLDEFLDNHIENYQVHRDFPNLEATSQLSAYLNIGIISIRQCLNALFRSQHGQFTIENI 277
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
G TW+ +L+WR+FYQ IL+ +P V FK+ + W A ++ + W G TG
Sbjct: 278 GQQTWMDELLWREFYQHILFDFPRVSKHLPFKQTTQKLAWRD---APEDLIAWQMGQTGI 334
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
P++D+ + QL +G+MHNR+RM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQ
Sbjct: 335 PIVDAGMRQLLQTGWMHNRVRMIVAMFLSKNLLIDWRLGEQWFMQHLIDGDLAANNGGWQ 394
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEK 433
W AS+G S P+FRIFNP+ QS+KFD +G +IRK++P+L+ L K IH P+ +S
Sbjct: 395 WCASTGTDSVPYFRIFNPVSQSQKFDAEGEYIRKWVPELADLDAKTIHEPYAKNSE---- 450
Query: 434 AGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+ NYP+PI++ S+ ++ + I
Sbjct: 451 ----IQLNYPQPIVDLKQSRIRAIEAFKQI 476
>gi|408388110|gb|EKJ67801.1| hypothetical protein FPSE_12017 [Fusarium pseudograminearum CS3096]
Length = 593
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 163/447 (36%), Positives = 233/447 (52%), Gaps = 25/447 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
RI+F+ +++ + +L D L + K + +++L + N +YE
Sbjct: 151 RIDFMLRTLSVIKEDLAKLDIPLYVETVEKRKHLPDRILELMDEWGASHLYANMEYEVDE 210
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + K+ G F D I E+ GK Y++++ + K WI + N
Sbjct: 211 LRREAAMIKDFAENGKAFEVVHDTCIVPPGELHTGAGKQYAVYTPWLKTWIAHIHENLDL 270
Query: 143 LQSY--PVKSYLNNLVHSSKLHKIINNNIISL---NDLGFC-KSNLSSLGIKTGASGAKI 196
L+ Y P K N K K+ N I LG K L SL G AK
Sbjct: 271 LELYEPPEK---NPDSARKKFKKLFNVEIPEAPKSKRLGDGEKERLRSL-WPCGEHEAKK 326
Query: 197 LLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK-KHYKTDCI 254
L F + +I NY+ RN P+ TS LS+HL GTIS R V+ K K
Sbjct: 327 RLGKFCEERIGNYHEKRNIPADAATSSLSVHLASGTISARTCVRTARDRNKTKKLNGGND 386
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
G TW+S++ WRDFY+ +L +P V +NK FK EY NI W DN +F WC+G TG+
Sbjct: 387 GIQTWISEVAWRDFYKHVLVNWPYVCMNKPFKPEYSNISWSYDN---DHFAAWCEGRTGF 443
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
P++D+A+ Q+N+ GYMHNR RM+ ASFL K++ ++W+ GE YF L D D ASNNG W
Sbjct: 444 PIVDAAMRQMNTIGYMHNRCRMIVASFLAKDLLLDWRKGEKYFMEHLVDGDFASNNGGWG 503
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEK 433
+SAS G QP+FRIFNP++QS+KFD G +IRK++P+L L +K IH P+ + K
Sbjct: 504 FSASVGVDPQPYFRIFNPLLQSEKFDPDGDYIRKWVPELKDLDSKAIHDPYNRKAGPQAK 563
Query: 434 AGIILGKNYPKPILEHSLSKKNILKRY 460
K YP PI+ H ++ L Y
Sbjct: 564 K-----KGYPAPIVTHKDCRERALAAY 585
>gi|425421356|ref|ZP_18802564.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1288]
gi|408347197|gb|EKJ61427.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1288]
Length = 472
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 242/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + +Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGDYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 KL--DYPQPIVDHKEARLRTLAAYE 466
>gi|424035065|ref|ZP_17774394.1| deoxyribodipyrimidine photo-lyase, partial [Vibrio cholerae
HENC-02]
gi|408899448|gb|EKM33733.1| deoxyribodipyrimidine photo-lyase, partial [Vibrio cholerae
HENC-02]
Length = 470
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/413 (34%), Positives = 225/413 (54%), Gaps = 27/413 (6%)
Query: 50 IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIF 109
+ +A ++ I L+ VM N YE D+ + L + G F ++ D+ +
Sbjct: 75 VPEFADVTEVINDWATSLSAQRVMANIHYEVNEQALDREVSHALSIRGIAFDTFHDKCVH 134
Query: 110 EKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPV--KSYLNNLVHSSKLHKIINN 167
+LNK G+ + +F+ +++ W+ K + PV K + S + I +
Sbjct: 135 APTTVLNKQGEYFKVFTPFKRAWLAKFQ--------MPVVSKPEPQAELSPSTIQPIQPD 186
Query: 168 NIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIH 226
+ + F SS S L F + + Y R+ PS++GTS LS +
Sbjct: 187 RY--HDGVAFSYPRESSKRWFAATSDIVQHLREFARDRSDAYQAERDIPSVDGTSQLSPY 244
Query: 227 LRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFK 285
L G +S R+ + ++ +D G TWLS++IWR+FYQ +L P +V + F
Sbjct: 245 LAIGALSPRQCIARLYAESPMVDLSD--GKATWLSEIIWREFYQHLLVFEPKLVKGRGFI 302
Query: 286 KEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNM 345
D I W +Y ++ F W G TGYP++D+A+ QLN++G+MHNRLRM+ ASFL K++
Sbjct: 303 AWEDKIQW---SYDEQAFERWKAGNTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTKDL 359
Query: 346 GINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFI 405
I+W+WGE YF +KL D D A+NNG WQWSAS+GC QP+FRIFNPI Q +KFD G F+
Sbjct: 360 HIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGTFV 419
Query: 406 RKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILK 458
R ++P++ ++ NK+IH+PW S + L +Y KP+++H + ++ L+
Sbjct: 420 RHWVPEIKQVPNKFIHNPWLWSGFNL--------LDYHKPMVDHKVEREITLR 464
>gi|342877946|gb|EGU79364.1| hypothetical protein FOXB_10147 [Fusarium oxysporum Fo5176]
Length = 589
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 158/445 (35%), Positives = 236/445 (53%), Gaps = 21/445 (4%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++F+ +++ + +L D L + K + +++L V N +YE
Sbjct: 147 RVDFMLRTLEVIKHDLAKLDIPLYVETVEKRKRVPDRILELMDEWGASHVYANMEYEVDE 206
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + ++ G F D + E+ GK Y++++ + + W+ + N
Sbjct: 207 LRREASMIRDFAENGKAFEVVHDTCVVPPGELHTGAGKQYAVYTPWYRSWVAHIHENLDL 266
Query: 143 LQSY--PVKSYLNNLVHSSKLHKI-INNNIISLNDLGFCKSNLSSLGIKTGASGAKILLN 199
L+ Y P K+ + +KL + I + S G K L SL G AK L+
Sbjct: 267 LELYEPPEKNPSSARKDFAKLFDVEIPDAPKSKRLDGEEKERLRSL-WPCGEHEAKKRLD 325
Query: 200 NFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK-KHYKTDCIGYF 257
F ++ I NY RN P+ GTS +S+HL GTIS R V+ K K G
Sbjct: 326 KFCEEMIGNYQKKRNIPTEAGTSSISVHLASGTISARTCVRTARDRNKTKKLNGGNEGIQ 385
Query: 258 TWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TW+S++ WRDFY+ +L +P V +NK FK EY NI W DN ++F WC+G TG+P++
Sbjct: 386 TWISEVAWRDFYKHVLVHWPYVCMNKPFKPEYSNISWSYDN---EHFAAWCEGRTGFPIV 442
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLN GYMHNR RM+ A FL K++ ++W+ GE YF L D D ASNNG W +SA
Sbjct: 443 DAAMRQLNHLGYMHNRCRMIVACFLAKDLLLDWRKGERYFMEHLVDGDFASNNGGWGFSA 502
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW-KASSYKLEKAG 435
S G QP+FRIFNP++QS+KFD G +IRK++P+L L K IH P+ + + K +K G
Sbjct: 503 SVGVDPQPYFRIFNPLLQSEKFDPDGDYIRKWVPELKDLDRKAIHDPYNRGAGSKAKKNG 562
Query: 436 IILGKNYPKPILEHSLSKKNILKRY 460
YP PI+ H + L Y
Sbjct: 563 ------YPAPIVTHKDCRDRALAAY 581
>gi|425901487|ref|ZP_18878078.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397883811|gb|EJL00298.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 481
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 146/453 (32%), Positives = 251/453 (55%), Gaps = 36/453 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
+++F +++ +LS +L + L+IR A + ++ +++++L I+A+ +N +Y
Sbjct: 47 KVDFWLRNLEQLSGDLARLNIPLLIRQAPSWEQAPQVLLQLCRELAIEALHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + LK G F SY DQ++F +L ++G + +FS ++K CY
Sbjct: 107 SRRDTAVASLLKSQGVGFHSYLDQLLFRPGSVLTRSGGYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKS--NLSSLGIKTGASGAKILL 198
+ + S L + + + I + + GF +L +L G + A+ L
Sbjct: 158 NR---LHSALPPQLAAPRAQAALRIKADALPQQVEGFPTPGPHLQTL-WPAGETAAQQRL 213
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + ++ +Y R+ P+ GTS LS +L G +S R+ + + + + + G
Sbjct: 214 ARFAEAQLDHYQAERDLPARPGTSQLSPYLAAGVLSPRQCLHAALQNNRGEFASGSPGAV 273
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TW+++L+WR+FY+ IL YP V +++F+ E + + W A + W + TG P+I
Sbjct: 274 TWINELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRD---APEELAAWQQARTGLPII 330
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QL +G+MHNRLRM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+
Sbjct: 331 DAAMRQLLETGWMHNRLRMIVAMFLTKNLLIDWRQGERFFMRHLIDGDLAANNGGWQWSS 390
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G S P+FRIFNP+ QS++FD QG FI+ +LP+L+ L+ K IH+P G+
Sbjct: 391 STGTDSAPYFRIFNPLSQSQRFDSQGAFIKHWLPELAGLNAKDIHNP-------AAMGGL 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIKNILNR 469
+YP P+++ S+S++ L + KN+ +R
Sbjct: 444 FGVADYPPPMVDLSMSRERALAAF---KNLPSR 473
>gi|260769655|ref|ZP_05878588.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
gi|260614993|gb|EEX40179.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
Length = 475
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 235/445 (52%), Gaps = 29/445 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FI + + L L + L+ R + A + ++ L+ + V+ N DYE
Sbjct: 48 QADFIHRRLFVLQTELAALNVPLLYREVATFTEAVDAVTEVASALHANQVLANRDYELNE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + L G ++ S+ D+ + + NK G + +F+ +++ W+
Sbjct: 108 QQRDAQAAERLHQQGIEWQSFDDKCVMPPGSLRNKQGDYFKVFTPFKRAWL--------- 158
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
Q P + + L + + + ++ F +SS + L F
Sbjct: 159 TQFSPPRIQASRAAKPWSLPEALQS-LLWCEAQPFTHPRVSSDAWPVDFDTIRRRLRAFC 217
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ ++ +Y R++P+ +GTS LS +L G +S R+ + ++ +D G TWLS
Sbjct: 218 QEQLDDYKQQRDFPAQDGTSSLSPYLAIGALSPRQCIARVYAESAMGALSD--GAQTWLS 275
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+LIWR+FYQ +L P + +K F + W +D + F WC+G TGYP++D+A+
Sbjct: 276 ELIWREFYQHLLTFEPKLSKSKDFLAWGARLTWWTD---EAKFARWCEGNTGYPIVDAAM 332
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF L D D A+NNG WQW AS+GC
Sbjct: 333 RQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGC 392
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
QP+FRIFNP Q +KFD QG FIR+++P+L+ + +IH+P S++ G +
Sbjct: 393 DGQPYFRIFNPTTQGEKFDPQGRFIRQWVPELATVPEAHIHAP---SNW-----GGVNSL 444
Query: 441 NYPKPILEHSLSKKNILKRYNFIKN 465
YP+PI++H ++ L+ Y K+
Sbjct: 445 LYPQPIVDHKAEREVTLRLYKEAKD 469
>gi|421877716|ref|ZP_16309257.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE C10]
gi|372556494|emb|CCF25377.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE C10]
Length = 478
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 152/463 (32%), Positives = 248/463 (53%), Gaps = 29/463 (6%)
Query: 13 ILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL-NIDA 71
I+DP + + + F F S NL N + L++ + +KL L I
Sbjct: 36 IVDPEQIETTASLNQSAF-FASAKAFQANLANENIHLLVLKGTPESQFEKLTAALPEISD 94
Query: 72 VMINHDYEPQAIIRDKLIKKELKV-IGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
+ N D RD+ + + +G K +Y D + NEI G Y IF+ Y K
Sbjct: 95 LYFNFDERGYGRQRDQQVAHHCQTTLGLKTHAYIDYNLHSANEIKKADGAGYQIFTPYFK 154
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSS-----L 185
+WI K PVK + +L + ++ N + L+ G S ++ L
Sbjct: 155 RWITLPKPT-------PVKVSVTSL----QEKQMANIEPLHLHQEGLLTSLINEKHDKQL 203
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G + A L +FI+ + Y+ R+ P ++ TS+LS +LR G I+IR + + +
Sbjct: 204 VGQVGEAKALQTLKDFIQSHLAEYDTQRDLPFLDATSHLSRYLRTGEIAIRTIYQAVIN- 262
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFL 304
+ + G T++ +L WRD+Y MI P +S + E+ I W +++ +FL
Sbjct: 263 -----EPESEGQQTFIKELAWRDYYNMIYAMNPQQNTQSLRPEFQKIAWRNNH---NDFL 314
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W G TG+P++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D+D
Sbjct: 315 LWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRWGEQYFHDQLLDYD 374
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
ASN G WQW+AS+G S P+FRIFNP QS+KFD G FI++++P+LS+++N IH P
Sbjct: 375 PASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFDPDGQFIKQFVPELSQITNDKIHEPQ 434
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+ + ++ + L K+YPKP++ H ++ ++ Y K+ +
Sbjct: 435 LLTDLEQKEFQVTLDKDYPKPMVTHKQARLRAIEAYEQSKDTV 477
>gi|344942901|ref|ZP_08782188.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
gi|344260188|gb|EGW20460.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
Length = 453
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 238/450 (52%), Gaps = 45/450 (10%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V FIFD ++P Q ++F+ +SI +L LQ+ L + +A+ + ++
Sbjct: 32 QVIPCFIFDPRQIEPHPYQS---KPGLQFMLQSIQDLQQQLQSAGGKLALYHALPEQVVR 88
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+LV + I AV IN DY P + RD + K +G + D ++ E + + P
Sbjct: 89 QLVEQQQIQAVFINRDYTPFSRRRDDELAAVCKQLGIALHTLPDSLLNEPEQAVKMDKTP 148
Query: 122 YSIFS-FYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
Y +F+ FY + +PV L ++ S + I DL
Sbjct: 149 YKVFTAFYNNA------------KQFPVA--LPEVLVKSNFLAAASEFTIDQLDL----- 189
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+++ IK G A +L+ + N R++P+++ TS LS HL+FGT S+R++
Sbjct: 190 SVTEPAIKGGRKQALAILDRLGDYVDYLN-TRDFPALDATSKLSAHLKFGTCSVREVFYA 248
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
I + + + + QL WRDF+ I Y +P V ++F +++ ++ W+++
Sbjct: 249 ITEQLGSEHPL--------IRQLYWRDFFTHIAYHFPQVFGRAFLEKFADLTWDNN---P 297
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F WC G TG+P++D+ + +LN++GYMHNR+RM+TASFL+K++ I+W+WGE YFA L
Sbjct: 298 DYFQAWCDGKTGFPIVDAGMRELNATGYMHNRVRMITASFLVKDLHIDWRWGERYFARHL 357
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D+D NNGNWQW+AS+GC +QP+FRI NP +Q KFD +I ++LP+L K I
Sbjct: 358 VDYDPCVNNGNWQWTASTGCDAQPYFRILNPWLQQLKFDQDCRYIYRWLPELQAFPPKTI 417
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHS 450
H K S +YP PI++H+
Sbjct: 418 HQWDKKHS----------ACSYPAPIIDHA 437
>gi|407776584|ref|ZP_11123857.1| DNA photolyase [Nitratireductor pacificus pht-3B]
gi|407301875|gb|EKF20994.1| DNA photolyase [Nitratireductor pacificus pht-3B]
Length = 487
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 245/468 (52%), Gaps = 27/468 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ VFI D+ + R G R ++ S+ L +L LI++ + +
Sbjct: 40 LAAVFILDETS-EGTRPPGGA---RRWWLHHSLKALGEDLGRLGIRLILQRGPMADTAMR 95
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +LN AV N Y+P I D +K L+ G + S++ ++ E + G PY
Sbjct: 96 LAARLNAGAVYWNRRYDPPGIAADTRMKASLRDAGIEAESFEGHLLHEPWRLKTGAGGPY 155
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + + + ++ + + + LN H + ++ + +L K +
Sbjct: 156 RVFTPFWRALQQSIEPHAPADRPH----RLNAADHD------VASDPLDQWELLPSKPDW 205
Query: 183 SSLGIKT----GASGAKILLNNFIKKI-KNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
S G+ G +GA+ L+ F+ Y+ R+ + GTS LS HL G IS +
Sbjct: 206 SG-GLAAQWTPGEAGARERLDAFLAGGGTGYDRRRDVLADAGTSSLSPHLAHGEISPWQ- 263
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
I+ ++ ++ T+ +L WR+F +L+ P++ ++F +++D W+ D+
Sbjct: 264 ---IWSALEAGHELPAGDAQTFRKELGWREFCWHLLFHNPDLATRNFNRDFDAFPWQRDD 320
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
K W +G TGYP++D+A+ QL +G+MHNR RM+ ASFL+K++ ++W+ GE +F
Sbjct: 321 ---KALRAWQRGQTGYPVVDAAMRQLWQTGWMHNRARMIVASFLVKDLRLDWRSGEEWFW 377
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+ L D D ASN NWQW A SG + PFFRIFNP++Q +KFD G ++ +++P+L L
Sbjct: 378 DTLVDADPASNPANWQWVAGSGADAAPFFRIFNPVLQGEKFDPDGAYVHRFVPELRNLPK 437
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+YIH PW A++ L +AGI LG+ YP P+++H +++ L Y I+
Sbjct: 438 RYIHKPWNATAAALSEAGIRLGETYPAPMVDHGTARQIALDGYRVIRE 485
>gi|407693949|ref|YP_006818737.1| Deoxyribodipyrimidine photolyase family [Alcanivorax dieselolei B5]
gi|407251287|gb|AFT68394.1| Deoxyribodipyrimidine photolyase family [Alcanivorax dieselolei B5]
Length = 486
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 143/477 (29%), Positives = 240/477 (50%), Gaps = 43/477 (9%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLII----RYAIASK 58
V C +D + + PLR ++ +S+ EL L DL + +A A +
Sbjct: 35 VLCPGQWDAHDVAPLRRW---------YVLESLRELGEELAARGVDLHVIDGGDFAGAVE 85
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
+++ V + V N +Y + RD+ + + L+ G + + D V+ +
Sbjct: 86 VVQRFVADRGVTEVFCNREYPVNELNRDRAVARSLENTGVRIRGFDDGVLVPPRALNTGK 145
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPV-KSYLNNLVHSSKLHKIINNNIISLNDLGF 177
G PY++F+ Y+++W ++ L P + V + + K + +S
Sbjct: 146 GTPYTVFTAYKRRWDAWMEEKGPPLPETPRWPGGQGDFVGRATVRKALAELSVS------ 199
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK- 236
L+ L A+ A+ L + + +Y R+ P GTS LS L GT++ +
Sbjct: 200 --PRLTELWQPGEAAAARQLERFVARDLAHYKNRRDIPCEAGTSGLSAALSAGTLAPAQA 257
Query: 237 --LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILW 293
+ +L + C W+ +L WRDFY+ IL+ +P + F+ E + W
Sbjct: 258 WWVARLAMRDAGVREGAAC-----WIGELAWRDFYRQILHRFPMLAKGAPFRPETRLLQW 312
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
+DN + F WC+G TGYPL+D+A+ QL S+G+MHNRLRM+TA FL K++ I+W+ GE
Sbjct: 313 -NDN--ETLFNAWCQGRTGYPLVDAAMRQLLSTGWMHNRLRMLTAMFLTKHLFIDWRKGE 369
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
+F L D D+A+NNG WQWSAS+G + P+FR+F+P+ QS++FD QG FI +Y+P+L+
Sbjct: 370 RFFMQHLIDGDVAANNGGWQWSASTGTDAAPYFRVFSPVRQSRRFDPQGHFIARYVPELA 429
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+L N +H PWK +L +YP P++ H K+ + + ++ R
Sbjct: 430 ELDNDSVHEPWKQP---------LLSGDYPPPVVAHEGVKQRVEAAFRAARDTWRRQ 477
>gi|404317161|ref|ZP_10965094.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi CTS-325]
Length = 468
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 146/438 (33%), Positives = 227/438 (51%), Gaps = 28/438 (6%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAII 84
D+ +E I K + + I +L+I + +L+ KL + + N Y P
Sbjct: 55 DQSLEAIRKQLADRGI-------ELLIETGDPRDILPQLIAKLAVTELFWNRRYAPAERE 107
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQ 144
D +K +LK G S+ ++ E E+ + PY +F+ + K+ + +
Sbjct: 108 FDAKLKSQLKESGTGVTSFPGNLLLEPWELKTASDTPYQVFTPF-------AKALRLHNV 160
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK 204
P+ N+ + + H N + G G A+ L F++
Sbjct: 161 PRPLSRRQWNVKPTQEAHYAPNVPAWAEKFDGLWN---------IGEDAARDCLPRFLES 211
Query: 205 -IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
+ Y +R+ P I+GTS LS HLRFG IS R+ F+ +H+ G +LS+L
Sbjct: 212 TLSTYTEDRDVPGIDGTSRLSPHLRFGEISARQAWYATLAFMDEHHSARAGGE-KFLSEL 270
Query: 264 IWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
IWRDF LY ++ + I W D A F W +G TG+P+ID+ + QL
Sbjct: 271 IWRDFNYHQLYHRRDISRHDMRDTLSGIAWRDDRAA---FEAWRRGQTGFPIIDAGMRQL 327
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
++G+MHNR+RM+ ASFL KN+ I+W+ GE +F + L D D+ASN G+WQW A G +
Sbjct: 328 WATGWMHNRVRMLVASFLTKNLLIDWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAA 387
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYP 443
P+FR+FNPI+Q +KFD +G ++R ++P+LS LSNK++H P++A L AGI LG YP
Sbjct: 388 PYFRVFNPILQGEKFDAEGQYVRHWVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYP 447
Query: 444 KPILEHSLSKKNILKRYN 461
KPI++ S++ KR N
Sbjct: 448 KPIIDLQASQREARKRLN 465
>gi|365538417|ref|ZP_09363592.1| deoxyribodipyrimidine photolyase [Vibrio ordalii ATCC 33509]
Length = 470
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 149/475 (31%), Positives = 258/475 (54%), Gaps = 43/475 (9%)
Query: 3 VYCVFI-----FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIR----Y 53
V VFI + K+ L P+++ + I++ + EL LQ + L+ Y
Sbjct: 28 VVAVFIATPAQWQKHHLAPMQA---------DLIYRRLFELQRELQVLNIALLYEEVDDY 78
Query: 54 AIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNE 113
A A+++I + +LN AV++N +YE + RD++ + ++ +Y D+ I
Sbjct: 79 ADAAQQIATMAKQLNASAVLVNREYEINELQRDEMASQFCLEHQIEWRAYDDKCIIAPGS 138
Query: 114 ILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN 173
+ NK G + +F+ +++ W+ + + + P+ ++ + K ++ + S
Sbjct: 139 VKNKQGDYFKVFTPFKRAWLSQAAIPQ--ILPTPISAHYGPI-------KDLDPLLWS-E 188
Query: 174 DLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTI 232
F +SS + L F + K++NY+ R++P+++ TS LS +L G +
Sbjct: 189 HRSFSYPRISSDHWVVEFDAIRAKLRQFCRDKVQNYHQQRDFPALDSTSALSPYLATGAL 248
Query: 233 SIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNI 291
S R+ + ++ + + G TWLS++IWR+FYQ ++ P++ K F +
Sbjct: 249 SARQCMARLYA--ESQHIGLSEGAQTWLSEIIWREFYQHLIGFRPDLCKGKDFAPWGKYV 306
Query: 292 LWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKW 351
W ++ A F W +G TG+P++D+A+ QLN +G+MHNRLRMV ASFL K++ I+W+
Sbjct: 307 SWWENSTA---FERWQQGQTGFPIVDAAMRQLNKTGWMHNRLRMVVASFLTKDLHIDWRL 363
Query: 352 GENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQ 411
GE YF L D D ASNNG WQW AS+GC QP+FRIFNP Q ++FD +G FIR+++P+
Sbjct: 364 GEQYFMQTLVDGDYASNNGGWQWCASTGCDGQPYFRIFNPTSQGERFDPKGDFIRQWIPE 423
Query: 412 LSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
L+ L +KYIH+PWK + + +YP P+++H + ++ L+ Y K+
Sbjct: 424 LASLPDKYIHTPWKCPA--------VNSLSYPAPMVDHKVEREITLQLYKDAKDT 470
>gi|383787192|ref|YP_005471761.1| deoxyribodipyrimidine photolyase [Fervidobacterium pennivorans DSM
9078]
gi|383110039|gb|AFG35642.1| deoxyribodipyrimidine photolyase [Fervidobacterium pennivorans DSM
9078]
Length = 446
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 151/437 (34%), Positives = 241/437 (55%), Gaps = 15/437 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEI-KKLVIKLNIDAVMINHDYEPQAIIRDKL 88
++ KS++ L +L++ LIIR S + K L+ +++ D+V N ++P A RD+
Sbjct: 19 WLHKSLLSLIESLKSLGVKLIIRKGKDSSSVLKSLISEVHADSVYWNKRFDPLAKSRDEN 78
Query: 89 IKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPV 148
IKKEL G + ++ N GKPY +F+ + KK+ ++ PV
Sbjct: 79 IKKELISSGINVECFDGFLLHNPNSFFTADGKPYGVFTPFWKKFQNEI----VVSAPLPV 134
Query: 149 KSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKN 207
L + L ++ + N++ N S+ A+ LN FI +
Sbjct: 135 PERLQGVEFDVHLERLEDLNLLPKIKWYAEMENFWSVS----EQDAQKRLNWFISHALDG 190
Query: 208 YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRD 267
Y NR+ P ++GTS +S +L G IS R++ + K + L +L WR+
Sbjct: 191 YGENRDRPDLDGTSLMSPYLASGLISPRQIWHSVVNSKKNGVSEGAEAF---LRELAWRE 247
Query: 268 FYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSG 327
F +LY P++VN + KKE+D W D +++ W KG TG P+ID+ + QL +G
Sbjct: 248 FSYHVLYHNPDMVNANLKKEFDAFPWRWDK--TDDYVKWTKGLTGIPIIDAGMRQLWKTG 305
Query: 328 YMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFR 387
+MHNR+RM+ AS+L KN+ I+WK GE +F + L D D+A+N WQW+A G + P+FR
Sbjct: 306 WMHNRVRMIVASWLTKNLLIHWKIGEEWFWDTLVDADIANNVQGWQWTAGCGADAAPYFR 365
Query: 388 IFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPIL 447
IFNP++QSKKFD +G++IRK++P+L+KL ++YIH PW A Y L+ G+ LGK+YP P+
Sbjct: 366 IFNPVLQSKKFDPKGMYIRKWVPELAKLPDEYIHEPWNAPVYLLKMIGLELGKDYPLPMA 425
Query: 448 EHSLSKKNILKRYNFIK 464
++K L+ + I+
Sbjct: 426 SIEETRKRALEAFEKIR 442
>gi|448474041|ref|ZP_21602009.1| deoxyribodipyrimidine photolyase [Halorubrum aidingense JCM 13560]
gi|445818321|gb|EMA68180.1| deoxyribodipyrimidine photolyase [Halorubrum aidingense JCM 13560]
Length = 504
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 138/486 (28%), Positives = 235/486 (48%), Gaps = 38/486 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD N+L D R+ + + L + ++ SDL++ + +
Sbjct: 29 VVPVFVFDDNVL------AHASDVRVRRLLDGVAALRDDYRDRGSDLLVARGDPETVLPE 82
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L+ D V+ N DY A RD ++ L G ++ D V+ I G PY
Sbjct: 83 LADALDADRVVWNRDYSGLARERDAGVRTALNDAGVDREAHHDAVLHTPGSIRTNAGDPY 142
Query: 123 SIFSFYQKKWIEKVKSNKCYLQ-----------SYPVKSYLNNLVHSSK------LHKII 165
S++S+Y KKW ++ + + + + +L S+ ++
Sbjct: 143 SVYSYYWKKWTDRETDSPAPTPGGDALVDADVLAGAIGAGDGSLAEGSRSDGGVATDRVA 202
Query: 166 NNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLS 224
+ +L +LGF + + + +G G A+ L F+ + + Y+ R+YP+ TS LS
Sbjct: 203 VGELPALTELGFAEPD-AEIG-PAGTEAARDRLGAFLSEAVFAYDAARDYPAREATSRLS 260
Query: 225 IHLRFGTISIRKLVKLIFKFIKKHYKTD-----CIGYFTWLSQLIWRDFYQMILYCYPNV 279
L++G I +R++ + + + D + QL WR+FY +LY P V
Sbjct: 261 AFLKYGEIGVREVYEATERAMAAAESDDRPAEHAESVAEYQQQLAWREFYTQVLYHNPEV 320
Query: 280 VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTAS 339
V +++K I W D + W +G TGYP++D+ + QL + +MHNR+RM+ AS
Sbjct: 321 VTENYKAYEAGIEWRDD---PEEIAAWKRGETGYPIVDAGMRQLRAEAFMHNRVRMIVAS 377
Query: 340 FLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFD 399
FL K++ +W+ G YF L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D
Sbjct: 378 FLTKDLLADWRQGYEYFRETLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 437
Query: 400 YQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKR 459
+I++++P+L L IH + S + A YP PI++HS ++ L
Sbjct: 438 PDAEYIKEHVPELRGLDADLIHEWHELSPTQRANA----APEYPAPIVDHSERREAALAM 493
Query: 460 YNFIKN 465
Y +
Sbjct: 494 YKRARG 499
>gi|448568084|ref|ZP_21637692.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
gi|445727546|gb|ELZ79157.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
Length = 484
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 137/478 (28%), Positives = 243/478 (50%), Gaps = 37/478 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD+++LD + R+ ++ ++ EL + SDL++ +
Sbjct: 27 VAPLFVFDRDVLDHAGAP------RVRYLLDALSELRDAYRERGSDLLVARGDPRTVVPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L+ + + DY A RD ++ L G D + I G Y
Sbjct: 81 VAAALDAERAVWGIDYSGLARERDADVRLALDEAGVAREPVHDAIFHPPGSITTNAGDTY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYP------------VKSYLNNLVHSSKLHKIINNNII 170
S+++++ KKW ++ K + YP ++S +L + I +
Sbjct: 141 SVYTYFWKKWHDRDKPDP-----YPEPDADDLADAATLESAAQDLTNGDAEFDIAVGGLP 195
Query: 171 SLNDLGFCKSNLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRF 229
+++DLGF + + S G A+ L+ F I Y +R+YP+ + TS LS L+F
Sbjct: 196 TISDLGFEEPSASVQ--SAGTEAARERLSAFCADAIYRYADDRDYPTRDATSRLSTDLKF 253
Query: 230 GTISIRKLVKLIFKFIKK--HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKE 287
GTI IR++ + + + + F SQL WR+FY +L +PNVV +++K+
Sbjct: 254 GTIGIREVYAATAAAREGVGGERDESVEEFQ--SQLAWREFYAHVLREHPNVVTENYKEY 311
Query: 288 YDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGI 347
++I W D+ + W G TGYP++D+ + QL YMHNR+RM+ ASFL K++
Sbjct: 312 EEDIAWRDDD---EELAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLC 368
Query: 348 NWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRK 407
+W+ G +F L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D G +I++
Sbjct: 369 DWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKR 428
Query: 408 YLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
Y+P+LS ++ IH + + + E+ L +YP+PI++H+ ++ + + +
Sbjct: 429 YVPELSDVTANTIHEWHELTDLERER----LAPDYPEPIVDHAERRERAISMFEAARG 482
>gi|419924461|ref|ZP_14442350.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-15]
gi|388389960|gb|EIL51464.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-15]
Length = 472
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 244/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + IK++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVLCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCENGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|27367890|ref|NP_763417.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6]
gi|27359463|gb|AAO08407.1|AE016813_159 Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6]
Length = 471
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 247/457 (54%), Gaps = 34/457 (7%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+ + + + L+I L YD + YA ++ + +L + V+
Sbjct: 46 MAPMQADLIA--RRLAVLAEELNALNIPLL-YDE--VDDYAQSATRVANWAEQLAVSEVV 100
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
+N +YE +RD+ + +L +D+ + +LNK G + +F+ ++K W+
Sbjct: 101 LNREYEVNERVRDEQLVNQLASSEIGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWL 160
Query: 134 EKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASG 193
+ + S L + SS H+ F SS +
Sbjct: 161 KSFVPPQIIKTSAAQPVVLPEALQSSLWHE----------QAPFSYPRQSSEEWSVDSQQ 210
Query: 194 AKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
+ L +F +++ Y+ R++P+ GTS LS +L G IS+R+ + ++ ++ Y ++
Sbjct: 211 IRETLRHFCHEEVDRYHEQRDFPATAGTSVLSPYLAIGAISVRQCIARLY--WQQSYLSN 268
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLN-WCKGY 310
G WLS+LIWR+FY +++ P +V + F + ++LW AK ++ + WC+G
Sbjct: 269 --GREVWLSELIWREFYHHLIHFEPKLVKGQGFVEWEKHLLWP----AKPDWFDRWCRGE 322
Query: 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNG 370
TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ +NW+ GE YF KL D D A+NNG
Sbjct: 323 TGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHVNWRLGEQYFMQKLVDGDFAANNG 382
Query: 371 NWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYK 430
WQW AS+GC QP+FRIFNPI Q +KFD G F++ +LP+L ++ +K++H PW +
Sbjct: 383 GWQWCASTGCDGQPYFRIFNPITQGEKFDPNGEFVKHWLPELVEVPSKFVHQPWNWPGH- 441
Query: 431 LEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+ +YP P+++H ++ L Y K+ L
Sbjct: 442 -------MQLDYPAPMVDHKQEREITLSLYTQAKDCL 471
>gi|417711314|ref|ZP_12360320.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272]
gi|417715768|ref|ZP_12364702.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227]
gi|333010183|gb|EGK29618.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272]
gi|333021140|gb|EGK40397.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227]
Length = 472
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 242/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCENGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP+I
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIVWTDRVQWQSN---PAHLQAWQKGKTGYPII 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRNVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
Length = 484
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 146/466 (31%), Positives = 234/466 (50%), Gaps = 27/466 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V V+I D S G ++ S+ L+ +L+ S LI+R A+ + +
Sbjct: 40 VVAVYILDDEDAGDWASGGASR----WWLHHSLERLAESLRGRGSRLILRRGAAAAVLDR 95
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + +AV N YEP A RD+ IK L++ G + S+ ++ E EI +K G PY
Sbjct: 96 LISETGAEAVYWNRCYEPWATARDQAIKASLRLRGHEVRSFNASLLREPWEIASKVGGPY 155
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + K + + L P + L ++ I L K +
Sbjct: 156 RVFTPFWKA--LRAMGDPGDLLPTPDRI--------PTLEVAPASDDIDAWALTPSKPDW 205
Query: 183 S---SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+ K G + A+ L F+ Y RN+P NGTS LS HL FG I R+
Sbjct: 206 AFGLRAAWKPGEAAARQRLEAFLDGAAPEYAKRRNFPGTNGTSRLSPHLHFGEIGPRQ-- 263
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
I+ H+ F LS++ WR+F +L+ +P + + E+ + W D
Sbjct: 264 --IWHAASFHHTGMATDQF--LSEIAWREFSHHLLFHFPMLPTTPLRPEFADFQWSDDPG 319
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
A W G TGYP++D+ + +L ++G+MHNR+RM+ ASFL+K++ + W+ G +F +
Sbjct: 320 A---LAAWRHGMTGYPIVDAGMRELWATGWMHNRVRMIVASFLVKDLLLPWQVGARWFWD 376
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D DLASN+ +WQW A G + PFFR+FNP +Q KFD QG ++R+++P+++ L +
Sbjct: 377 TLVDADLASNSASWQWVAGCGSDAAPFFRVFNPSLQGAKFDPQGTYVRRWVPEIAGLPDS 436
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
IH P A L AGI LG +YP PI++H ++ L + ++
Sbjct: 437 IIHKPSDARLIDLSDAGIRLGHDYPLPIIDHRAARDRALTAFRSLR 482
>gi|374628763|ref|ZP_09701148.1| deoxyribodipyrimidine photo-lyase type I [Methanoplanus limicola
DSM 2279]
gi|373906876|gb|EHQ34980.1| deoxyribodipyrimidine photo-lyase type I [Methanoplanus limicola
DSM 2279]
Length = 476
Score = 260 bits (665), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 156/438 (35%), Positives = 241/438 (55%), Gaps = 41/438 (9%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
I + R FI +S+ EL + L+ +S L K ++ L+ + +A N DY P A
Sbjct: 52 IPEVRHSFIIRSLNELDLELKEKESRLYYFSDGTEKALEYLIKETGAEAFFANRDYSPYA 111
Query: 83 IIRDKLIKKELKVIG-CKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIE-KVKSNK 140
RD + L G + D ++ E +L K G YS+F+ Y ++ E KV+
Sbjct: 112 QKRDIKAAEILNSAGITDYCLTPDLMLNEPGRVLRKDGGTYSVFTPYFRRAEEHKVR--- 168
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGAS-----GAK 195
P+K +N S ++ + NII + + G+KTG+ G +
Sbjct: 169 -----VPLKCRYDNFYRSYDINP--DKNIIPGGSNTKIEVKYGTEGLKTGSERNHLKGGR 221
Query: 196 ILLNNFIKKI---KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
N + K+ K+Y+ RN PS+ GT+YLS HL+FGT+S+R++ I
Sbjct: 222 AEALNLLGKLAELKDYSNTRNIPSVKGTTYLSAHLKFGTVSVREVYNAI---------AG 272
Query: 253 CIGYFT-WLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
+GY + L QL WRDFY + P++ F ++Y+ + W +D +K F WC G T
Sbjct: 273 TLGYDSELLRQLYWRDFYIYTAFHNPHIFTGPFHRKYEKLPWNND---EKLFEKWCTGNT 329
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
G+P++D+ + +LNS+GYMHNR+RM+TASFL+K++ INW GE YFA+KL D+D NNGN
Sbjct: 330 GFPIVDAGMRELNSTGYMHNRVRMITASFLVKDLHINWMRGERYFASKLLDYDPCINNGN 389
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL 431
WQWSAS+G SQP+FRIFNP +Q KK+D I+I++++ +LS + IH+P + +++
Sbjct: 390 WQWSASTGSDSQPWFRIFNPWLQQKKYDPDCIYIKRWVTELSDIPPSRIHNPDLMNKHEI 449
Query: 432 EKAGIILGKNYPKPILEH 449
K YP P+ +H
Sbjct: 450 --------KGYPHPVADH 459
>gi|320158160|ref|YP_004190538.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
gi|319933472|gb|ADV88335.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
Length = 469
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 239/445 (53%), Gaps = 32/445 (7%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR+ + + + L+I L YD + YA ++ + +L + V+ N +YE +R
Sbjct: 54 RRLAVLAEELNALNIPLL-YDE--VDDYAQSATRVANWAEQLAVSEVVFNREYEVNERVR 110
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
D+ + +L +D+ + +LNK G + +F+ ++K W++ + S
Sbjct: 111 DEQLINQLASSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVPPQIIKTS 170
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KK 204
L + S H+ F SS + + L +F ++
Sbjct: 171 AAQPVVLPEALQPSLWHE----------QAPFSYPRESSEAWSVDSQQIRETLRHFCHEE 220
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ Y+ R++P+ GTS LS +L G IS+R+ + ++ ++ Y ++ G WLS+LI
Sbjct: 221 VDRYHEQRDFPATAGTSVLSPYLAIGAISVRQCIARLY--WQQSYLSN--GREVWLSELI 276
Query: 265 WRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKN-FLNWCKGYTGYPLIDSAIIQ 322
WR+FY +++ P +V + F + ++LW AK + F WC+G TGYP++D+A+ Q
Sbjct: 277 WREFYHHLIHFEPKLVKGQGFVEWEKHLLWP----AKPDWFERWCRGETGYPIVDAAMRQ 332
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
LN +G+MHNRLRM+ ASFL K++ +NW+ GE YF KL D D A+NNG WQW AS+GC
Sbjct: 333 LNQTGWMHNRLRMIVASFLTKDLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDG 392
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNY 442
QP+FRIFNPI Q +KFD G F++ +LP+L+++ +K++H PW + + +Y
Sbjct: 393 QPYFRIFNPITQGEKFDPNGEFVKHWLPELAQVPSKFVHQPWNWPGH--------MQLDY 444
Query: 443 PKPILEHSLSKKNILKRYNFIKNIL 467
P P+++H ++ L Y K+ L
Sbjct: 445 PAPMVDHKQEREITLSLYTQAKDCL 469
>gi|146293808|ref|YP_001184232.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens CN-32]
gi|145565498|gb|ABP76433.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella putrefaciens
CN-32]
Length = 493
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 219/400 (54%), Gaps = 25/400 (6%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSF 127
NI V + E +RD+ G + + +LN +G+ Y +F+
Sbjct: 111 NITRVFAGSEPEINERVRDQACIDA----GVPLLLTDEHCLLAPGTVLNLSGEMYRVFTP 166
Query: 128 YQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI 187
+ +KW E + P L ++ K + N + SS
Sbjct: 167 FSRKWREIAARHAILPLGVPAP--LGPVLPEPKALNLAVNKV-------------SSEQW 211
Query: 188 KTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G AK LL +FI +K+++Y +R++P+++GTS +S +L G +S R+ V + +
Sbjct: 212 GAGEGQAKRLLCDFIQQKVQDYKQDRDFPALDGTSCISPYLAIGVLSARQCVAALLQRFP 271
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLN 305
+ D TWL++L+WR+FY+ +L +P++ N +F ++ D + W ++ + F
Sbjct: 272 EVIVDDTSLGRTWLNELVWREFYRHLLVAFPDLSKNHNFNRQADQVQWRNN---IEEFKA 328
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
WC+G TGYP++D+A+ QLN +G+MHNRLRMV ASFL K++ I+W+WGE YF KL D DL
Sbjct: 329 WCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQKLIDGDL 388
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
A+NNG WQWSA GC +QP+FRIFNP+ QS+KFD G FIRKYLP+L+ K +H P
Sbjct: 389 AANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRKYLPELASWGIKQLHQPNT 448
Query: 426 ASSYKLEKAGIILGK-NYPKPILEHSLSKKNILKRYNFIK 464
A + L K + + YP I++H+ ++ L +K
Sbjct: 449 AKTPLLFKQPLFAEQAAYPSAIVDHTEARVRALSVLGVLK 488
>gi|193065554|ref|ZP_03046622.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
gi|194429065|ref|ZP_03061596.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
gi|260842916|ref|YP_003220694.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O103:H2 str. 12009]
gi|415804922|ref|ZP_11501153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010]
gi|416346215|ref|ZP_11679486.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B]
gi|417161485|ref|ZP_11997721.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0741]
gi|417173694|ref|ZP_12003490.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2608]
gi|417179431|ref|ZP_12007421.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0624]
gi|417242575|ref|ZP_12037792.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 9.0111]
gi|417622024|ref|ZP_12272350.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_H.1.8]
gi|419298986|ref|ZP_13841000.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11C]
gi|419315583|ref|ZP_13857408.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12A]
gi|419321430|ref|ZP_13863166.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12B]
gi|419327648|ref|ZP_13869277.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12C]
gi|419333082|ref|ZP_13874641.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12D]
gi|419338484|ref|ZP_13879970.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12E]
gi|419344334|ref|ZP_13885716.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13A]
gi|419348772|ref|ZP_13890125.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13B]
gi|419353685|ref|ZP_13894968.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13C]
gi|419359015|ref|ZP_13900245.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13D]
gi|419364042|ref|ZP_13905223.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13E]
gi|419871209|ref|ZP_14393269.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H2 str.
CVM9450]
gi|420390115|ref|ZP_14889383.1| deoxyribodipyrimidine photolyase [Escherichia coli EPEC C342-62]
gi|432812811|ref|ZP_20046657.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE101]
gi|192926843|gb|EDV81469.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
gi|194412896|gb|EDX29187.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
gi|257758063|dbj|BAI29560.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O103:H2 str. 12009]
gi|320198176|gb|EFW72780.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B]
gi|323158756|gb|EFZ44769.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010]
gi|345385472|gb|EGX15316.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_H.1.8]
gi|378155774|gb|EHX16830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11C]
gi|378173681|gb|EHX34515.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12B]
gi|378174037|gb|EHX34865.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12A]
gi|378175651|gb|EHX36466.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12C]
gi|378188762|gb|EHX49356.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13A]
gi|378190279|gb|EHX50864.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12D]
gi|378193388|gb|EHX53927.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12E]
gi|378204434|gb|EHX64850.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13B]
gi|378207663|gb|EHX68052.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13D]
gi|378207976|gb|EHX68361.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13C]
gi|378218790|gb|EHX79060.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13E]
gi|386174021|gb|EIH46022.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0741]
gi|386176386|gb|EIH53865.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2608]
gi|386186093|gb|EIH68810.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0624]
gi|386211563|gb|EII22019.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 9.0111]
gi|388337681|gb|EIL04178.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H2 str.
CVM9450]
gi|391314439|gb|EIQ71989.1| deoxyribodipyrimidine photolyase [Escherichia coli EPEC C342-62]
gi|431356931|gb|ELG43617.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE101]
Length = 472
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|402487390|ref|ZP_10834210.1| deoxyribodipyrimidine photo-lyase [Rhizobium sp. CCGE 510]
gi|401813716|gb|EJT06058.1| deoxyribodipyrimidine photo-lyase [Rhizobium sp. CCGE 510]
Length = 483
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 238/438 (54%), Gaps = 16/438 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L+ L++ A + + L+ + +AV N Y+P I D I
Sbjct: 58 WLHHSLKALDESLRKRQGRLVLSSGGALEVLCALIRESGAEAVFWNRRYDPSGISIDSRI 117
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K EL+ + S+ Q++ E + ++ +G PY +++ + + +E +++ P K
Sbjct: 118 KHELEQQAIEARSFGGQLLHEPSLLMTGSGTPYRVYTPFWRA-LEGAGEPGRPVEA-PAK 175
Query: 150 SYL-NNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKN 207
L + L S KL N + + D ++L + G GA+ L F++ +
Sbjct: 176 LLLASQLPKSEKLESW--NLLPTKPDWAGDFADLWT----PGEEGAQEKLGVFVEDALDG 229
Query: 208 YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRD 267
Y NR+YP+ TS LS HL G IS ++ + TD + + ++ WR+
Sbjct: 230 YKQNRDYPAKPATSMLSPHLALGEISPARIWDATRGLSSRVPATDIVHF---RKEIAWRE 286
Query: 268 FYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSG 327
F +L+ +P + + ++ +D W +D +F WC+G TGYP++D+ + QL G
Sbjct: 287 FSYHLLFHFPRLASANWNDRFDGFEWRNDG---DDFKAWCRGMTGYPIVDAGMRQLWRHG 343
Query: 328 YMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFR 387
+MHNR+RM+ SFLIK++ I+W+ GE +F + L D D A+N +WQW A SG + PFFR
Sbjct: 344 WMHNRVRMIVGSFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFR 403
Query: 388 IFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPIL 447
IFNP++Q + FD G ++R ++P+L +L KYIH P++A L++AGI LG+ YPKPI+
Sbjct: 404 IFNPVLQGETFDPDGDYVRAHVPELQRLGAKYIHRPFEAPKSVLDEAGITLGQTYPKPIV 463
Query: 448 EHSLSKKNILKRYNFIKN 465
+H ++ L YN +++
Sbjct: 464 DHKSARNRALAAYNAMRD 481
>gi|389573401|ref|ZP_10163476.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. M 2-6]
gi|388427098|gb|EIL84908.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. M 2-6]
Length = 477
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 148/413 (35%), Positives = 219/413 (53%), Gaps = 28/413 (6%)
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
+KL+ +I+AV N D RD+ + + L+ G ++D + +IL G
Sbjct: 86 QKLMNAYDINAVFFNEDEVGNGRTRDEQVTRFLEEKGIHVSKWQDTHLHGARDILKADGS 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF--- 177
Y +F+ Y + W ++ K + + KS+L S H I + ++ D
Sbjct: 146 HYQVFTPYYQAWRKQEKQSVIKVD----KSFL------SSEHTICDESLSEKGDEKLRDI 195
Query: 178 ---CKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTIS 233
C +G + A+ L FI+ ++ Y+ R+ PS+ GTS LS L+ GTIS
Sbjct: 196 IKKCTRKFDQIG----SDKARSTLGGFIQERLTRYHEKRDIPSVFGTSKLSRFLKTGTIS 251
Query: 234 IRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
IR IF + + + G T++ +L WRDFY MI YP + K + +I W
Sbjct: 252 IR----TIFHAVNEEELFEDEGKETFIKELAWRDFYHMIFAHYPEMKEKEINSSFQHIKW 307
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
D F WCKG TG+PL+D+ + QLN G+MHNRLRMVTASFL K+ I+W+ GE
Sbjct: 308 NDDETL---FEAWCKGQTGFPLVDAGMRQLNEEGWMHNRLRMVTASFLTKDYFIDWRKGE 364
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YFA KL D+D ASN G +QW+AS G + P+FRIFNP QSK+FD G +IR+Y+P+L
Sbjct: 365 AYFARKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRFDPSGEYIRRYVPELK 424
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
++ K+IH P K + K+G +LG YP P ++H +K + + K
Sbjct: 425 HVNEKWIHEPSKMPIDEQMKSGCVLGDTYPLPTVDHQERRKRAISTFEEAKQT 477
>gi|449303844|gb|EMC99851.1| hypothetical protein BAUCODRAFT_62992 [Baudoinia compniacensis UAMH
10762]
Length = 599
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 157/454 (34%), Positives = 249/454 (54%), Gaps = 39/454 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL-------NIDAVMINHDYE 79
R++F +++ + +L D L Y +E K ++ + N + N +YE
Sbjct: 148 RVDFELRTLEVMKEDLAEKDIPL---YVTTIEERKNVIPHIMQKCEEWNAKHIYCNIEYE 204
Query: 80 PQAIIRD-KLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
+ R+ KL+KK L G F + D V+ ++ GK YS++S + + WI+ +
Sbjct: 205 VDELRRESKLVKKCLDQ-GISFTAVHDDVVVPPETLVTGAGKQYSVYSPWFRAWIKHIHE 263
Query: 139 NKCYLQSYPVKSY-------LNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGA 191
+ L ++P + L + +S L N +++ + ++ +SL G
Sbjct: 264 HPHLLDAFPPPTPNPPTARQLFEPIFASPLPTTPPNKSLTIEE----RNRFASL-WPAGE 318
Query: 192 SGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYK 250
A L F+ +K+ Y RN+P+ N T LS+H GT++ R ++ + I K
Sbjct: 319 HEAHSRLTRFLHEKVGKYKETRNFPAHNSTGLLSVHFSSGTLAARTAIRSA-RDINSTKK 377
Query: 251 TDC--IGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWC 307
D +G W+S+L WRDFY+ +L +P V ++K FK EY +I WE D+ F WC
Sbjct: 378 LDGGNLGITGWISELAWRDFYKHVLAHWPYVCMHKPFKYEYTDIEWEYDD---AKFEAWC 434
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
+G TGYP++D+A+ QLN GYMHNR RM+ ASFL K++ +W+ GE YF L D D AS
Sbjct: 435 EGRTGYPIVDAAMRQLNYMGYMHNRCRMIVASFLAKDLLTDWRRGERYFMEHLIDGDFAS 494
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
NNG W +SAS+G QP+FRIFNP++QS+KFD G +IRK++P+L+ + IH P+
Sbjct: 495 NNGGWGFSASTGVDPQPYFRIFNPLLQSEKFDEGGEYIRKWIPELAGVVGTAIHDPYGRG 554
Query: 428 SYKL-EKAGIILGKNYPKPILEHSLSKKNILKRY 460
+ K+ EKAG YP+PI++H ++++ L RY
Sbjct: 555 AGKVAEKAG------YPRPIVDHKMARERALARY 582
>gi|300816355|ref|ZP_07096577.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
gi|415878911|ref|ZP_11544480.1| deoxyribodipyrimidine photolyase [Escherichia coli MS 79-10]
gi|432804787|ref|ZP_20038729.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE91]
gi|432933174|ref|ZP_20132895.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE184]
gi|433192652|ref|ZP_20376667.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE90]
gi|300531045|gb|EFK52107.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
gi|342927077|gb|EGU95799.1| deoxyribodipyrimidine photolyase [Escherichia coli MS 79-10]
gi|431356972|gb|ELG43656.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE91]
gi|431455962|gb|ELH36312.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE184]
gi|431720608|gb|ELJ84634.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE90]
Length = 472
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 241/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 KL--DYPQPIVDHKEARLRTLAAYE 466
>gi|399517249|ref|ZP_10758805.1| Deoxyribodipyrimidine photolyase [Leuconostoc pseudomesenteroides
4882]
gi|398647875|emb|CCJ66832.1| Deoxyribodipyrimidine photolyase [Leuconostoc pseudomesenteroides
4882]
Length = 395
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 228/391 (58%), Gaps = 35/391 (8%)
Query: 85 RDKLIKK----ELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ I K EL+V F + F+ I + G Y +F+ Y K+WI++ K +
Sbjct: 28 RDQAIAKYCRDELQVTPHPFLDFTLHSAFD---IKKQDGTGYKVFTPYFKQWIQRPKKSP 84
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKII----NNNIISLNDL-GFCKSNLSSLGIKTGASGAK 195
Y +L HS + K + N+ L L C S I G S AK
Sbjct: 85 NY-----------DLRHSEIVKKQLVLPNNDATAELKKLIRPCDSYAYENQI--GESVAK 131
Query: 196 ILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI 254
+L +F+ K+ +Y+ NR+ PS++ TS+LS +LR G ISIR I+ +++ ++D
Sbjct: 132 QVLIDFVSHKLADYDKNRDIPSLDATSHLSRYLRTGEISIR----TIYGAVRQEPESD-- 185
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314
G T++ +L WRD+Y MI YP+ K+ K + N++W+++ + +F W G TG+P
Sbjct: 186 GRTTFIKELCWRDYYNMIYAMYPDQQEKAIKTSFQNVVWQNN---EDHFKAWRTGRTGFP 242
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
++D+A+ QLN +G+MHNRLRMV ASFL K++ I+W+WGE YF KL D+D ASN G WQW
Sbjct: 243 IVDAAMRQLNETGWMHNRLRMVVASFLTKDLLIDWRWGEKYFREKLVDYDPASNIGGWQW 302
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
+AS+G S P+FR+FNP IQS+KFD G FI +Y+P+L + +K IH P + + + +
Sbjct: 303 AASTGTDSVPYFRVFNPTIQSEKFDPNGTFITQYVPELKSIKSKKIHQPNQLTDAEQKAY 362
Query: 435 GIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
G+ L +YP+PI++H ++ + Y K+
Sbjct: 363 GVKLNDDYPQPIVDHKAARLRAIAVYEQSKD 393
>gi|127512408|ref|YP_001093605.1| deoxyribodipyrimidine photo-lyase [Shewanella loihica PV-4]
gi|126637703|gb|ABO23346.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella loihica PV-4]
Length = 478
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/454 (33%), Positives = 259/454 (57%), Gaps = 46/454 (10%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIA-SKEIKKLVIKLNIDAV-MINHDYEPQAII 84
+ + I + + ++ L Y +L+I A S +++ L V ++ + EP+ +
Sbjct: 48 KADLIRRHLELMAGELAEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPE--L 105
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN--KCY 142
++ K++ G +++ I +LN+ G+ + +F+ ++K W++ V + +C
Sbjct: 106 DEQERDKQVMAAGIDLRLWQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECV 165
Query: 143 ---LQSYPVKSYLNNLVHSSKLHKIINNNIISLN------DLGFCKSNLSSLGIKTGASG 193
+S PVKS + + +S+L + S+N D G + +G
Sbjct: 166 PTPAKSTPVKS-IGDAQAASQLPQQPTPQSSSINLDYPLVDSGRWPDSEQVMG------- 217
Query: 194 AKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH----Y 249
++L + + K+ NY R++P+I GTS LS +L G IS R L + +++H Y
Sbjct: 218 -QLLPHFWQDKLLNYGERRDFPAIKGTSGLSPYLAIGAISSRWLA---LQLVQRHPEVIY 273
Query: 250 KTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCK 308
T G FTWL++LIWRDFY+ +L+ YP ++ SF+ +Y+++ W ++ + +F WC+
Sbjct: 274 DTQH-GAFTWLNELIWRDFYKHLLFHYPELIKGGSFQPKYESLPWPNN---EAHFQAWCE 329
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TGYP++D+A+ QL +G+MHNRLRM+ ASFL K++ ++W GE +F +L D D ++N
Sbjct: 330 GRTGYPIVDAAMKQLRRTGWMHNRLRMIVASFLTKHLLVDWHKGERFFMQQLIDGDFSAN 389
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP--WKA 426
NG WQW+AS+GC +QP+FRIFNPI QS+KFD +G FIRKYLP+L ++ +K IH P + A
Sbjct: 390 NGGWQWAASTGCDAQPYFRIFNPITQSQKFDPRGEFIRKYLPELREVPDKQIHFPHDYLA 449
Query: 427 SSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
S K E YP PI++H +++ L Y
Sbjct: 450 SQGKAEI--------YPAPIVDHKAARQRALAFY 475
>gi|386314555|ref|YP_006010720.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200]
gi|319427180|gb|ADV55254.1| Deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200]
Length = 493
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 219/400 (54%), Gaps = 25/400 (6%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSF 127
NI V + E +RD+ G + + +LN +G+ Y +F+
Sbjct: 111 NITRVFAGSEPEINERVRDQACIDA----GVPLLLTDEHCLLAPGTVLNLSGEMYRVFTP 166
Query: 128 YQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI 187
+ +KW E + P L ++ K + N + SS
Sbjct: 167 FSRKWREIAARHAILPLGVPAP--LGPVLPEPKALNLAVNKV-------------SSEQW 211
Query: 188 KTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G AK LL +F+ +K+++Y +R++P+++GTS +S +L G +S R+ V + +
Sbjct: 212 GAGEGQAKRLLCDFVQQKVQDYKQDRDFPALDGTSCISPYLAIGVLSARQCVAALLQRFP 271
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLN 305
+ D TWL++L+WR+FY+ +L +P++ N +F ++ D + W ++ + F
Sbjct: 272 EVIVDDTSLGRTWLNELVWREFYRHLLVAFPDLSKNHNFNRQADQVQWRNN---IEEFKA 328
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
WC+G TGYP++D+A+ QLN +G+MHNRLRMV ASFL K++ I+W+WGE YF KL D DL
Sbjct: 329 WCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQKLIDGDL 388
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
A+NNG WQWSA GC +QP+FRIFNP+ QS+KFD G FIRKYLP+L+ K +H P
Sbjct: 389 AANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRKYLPELASWGIKQLHQPNT 448
Query: 426 ASSYKLEKAGIILGK-NYPKPILEHSLSKKNILKRYNFIK 464
A + L K + + YP I++H+ ++ L +K
Sbjct: 449 AKTPLLFKQPLFAEQAAYPSAIVDHTEARVRALSVLGVLK 488
>gi|408380523|ref|ZP_11178107.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
gi|407745736|gb|EKF57268.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
Length = 492
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/437 (31%), Positives = 229/437 (52%), Gaps = 14/437 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ LS +L + L++R A + L+ + AV N Y+P I DK +
Sbjct: 68 WLHHSLEALSASLDALGASLVLRSGAADAALSDLITETGASAVFWNRRYDPSGISVDKAL 127
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K +L G + ++ Q++ E ++ G + +++ + K + + + P
Sbjct: 128 KAKLIADGIEVRTFAGQILHEPTKLKTGAGGHFRVYTPFWKA----LDGSGEPPEPIPAP 183
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNY 208
L H K K+ + +++ + K S + G GA+ L +FI +K Y
Sbjct: 184 KALPAPEHWPKSEKLSDWDLLPTKP-NWAKGFESEW--QPGEDGARKRLADFIASGLKGY 240
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDF 268
R++P S LS HL G IS + + D I + +L+WRDF
Sbjct: 241 RTRRDFPGEAHVSMLSPHLALGEISPASVWHATRGLSDSYSSEDYIHF---RKELVWRDF 297
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGY 328
+L+ +P++ K++ ++D W +A W KG TGYP+ID+ + QL +G+
Sbjct: 298 SYHLLFHFPDLATKNWNTKFDAFPW---RHAPDLLEKWRKGQTGYPIIDAGMRQLWQTGF 354
Query: 329 MHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRI 388
MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D ASN +WQW A SG + PFFRI
Sbjct: 355 MHNRVRMIVASFLIKDLLIDWREGERWFRDTLVDADPASNAASWQWVAGSGADAAPFFRI 414
Query: 389 FNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
FNPI Q +KFD +G ++R+++P+L + +K+IH P+ A L++AG+ LGK YP+PI++
Sbjct: 415 FNPISQGEKFDPEGAYVRRFVPELKAMPDKFIHKPFDAPFAVLKEAGVSLGKTYPQPIVD 474
Query: 449 HSLSKKNILKRYNFIKN 465
H ++ + + +K
Sbjct: 475 HGKARDAAMAAFQGLKT 491
>gi|410634949|ref|ZP_11345574.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
gi|410145523|dbj|GAC12779.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
Length = 476
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/408 (34%), Positives = 238/408 (58%), Gaps = 15/408 (3%)
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
+ ++ + V+ N YEP I RDK +K++LK + S+ +++E I+N++G
Sbjct: 81 LNNIIEQTGATHVVWNRCYEPWQIHRDKELKEQLKQRNIQVESFNGSLLWEPWTIMNQSG 140
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
PY +F+ + +K + S + + S P+++ + V+ S L + I++ + + D+ + +
Sbjct: 141 SPYKVFTPFYRKGCLQAPSPRS-VTSAPIQA---SYVYESALDEGIDS-LNLMPDIPWYE 195
Query: 180 SNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL- 237
+ + G GA I L+ F+ + I +Y R+ PS+NGTS+LS HL FG IS ++
Sbjct: 196 QMQAHW--QPGEEGAGIALSEFLNQSINDYKQARDVPSLNGTSHLSPHLHFGEISPHQIW 253
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ KF D + LS++ WR+F +LY +P + +++F +++ W N
Sbjct: 254 YATLHKFNGSMANADMDCF---LSEIGWREFSYYLLYHFPTLPSENFNPKFNQYHWRGRN 310
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ W +G TG P++D+ + +L +GYMHNR+RM+ S+L+KN+ +W GE++F
Sbjct: 311 ---NDLEAWQRGQTGVPIVDAGMRELWQTGYMHNRVRMIVGSYLVKNLKTHWHHGESWFW 367
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+ L D DLA+N+ +WQW A SG + PFFRIFNP+ Q +KFD +G ++R+Y P+L L N
Sbjct: 368 DCLLDADLAANSASWQWVAGSGADASPFFRIFNPVTQGEKFDSEGEYVRRYCPELQNLPN 427
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
KYIH PW A L +A I LG++YP P+++ S++ L Y +KN
Sbjct: 428 KYIHKPWDAPEDVLIEANIRLGQDYPHPLVDLKESRQQALDAYEAVKN 475
>gi|302404190|ref|XP_002999933.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum
VaMs.102]
gi|261361435|gb|EEY23863.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum
VaMs.102]
Length = 589
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/449 (33%), Positives = 235/449 (52%), Gaps = 29/449 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++F +++ L +L D L I ++I +++L + N +YE
Sbjct: 146 RVDFTLRTLEILKHDLAKLDIPLHIETVEKRRQISDRIVELMGEWGATHLFANMEYEVDE 205
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + + G F + D + ++ TGK Y++++ + + W+ V N
Sbjct: 206 LRREAKLVRTFADKGMSFEAVHDTCVVPPGQLQTGTGKQYAVYTPWYRSWMRHVHENPDR 265
Query: 143 LQ--SYP------VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGA 194
L+ +P K NL +S++ + + N + + K +L G A
Sbjct: 266 LELFDHPNKNPSSAKERFGNLF-ASEIPEEVPNKTLGAEE----KKRFRAL-FPAGEHAA 319
Query: 195 KILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK-KHYKTD 252
+ L+ F I +Y RN P NGTS LS+HL GTIS R V+ K K
Sbjct: 320 RERLDKFCDGSISSYADRRNIPGDNGTSSLSMHLASGTISSRTCVRTARDRNKTKKLDGG 379
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
G TW+S++ WRDFY+ +L +P V +NK FK EY NI W +Y K +F WC+G T
Sbjct: 380 NGGIQTWISEVAWRDFYKHVLVHWPYVCMNKPFKPEYANIEW---SYEKDDFKAWCEGKT 436
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
G+P++D+A+ Q+ G+MHNR RM+ ASFL K++ I+W+ GE +F L D D ASNNG
Sbjct: 437 GFPIVDAAMRQMIHVGWMHNRCRMIVASFLCKDLLIDWRMGERFFMEHLVDGDFASNNGG 496
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL 431
W +SAS G QP+FRIFNP++QS+KFD G +IRK++P+L+ + K IH P+ +
Sbjct: 497 WGFSASVGVDPQPYFRIFNPLLQSEKFDPDGEYIRKWVPELAGVKGKAIHDPYGRGAGPQ 556
Query: 432 EKAGIILGKNYPKPILEHSLSKKNILKRY 460
K K YP+PI+ H ++ L Y
Sbjct: 557 AKK-----KGYPEPIVAHKDVRERALTEY 580
>gi|254481485|ref|ZP_05094729.1| deoxyribodipyrimidine photolyase family protein [marine gamma
proteobacterium HTCC2148]
gi|214038113|gb|EEB78776.1| deoxyribodipyrimidine photolyase family protein [marine gamma
proteobacterium HTCC2148]
Length = 483
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/436 (30%), Positives = 233/436 (53%), Gaps = 15/436 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L+ ++ +L++R ++ LV + AV + YEP A +K +
Sbjct: 56 WLHHSLQALTKSVAEQGGNLLVRRGDTQAQLNALVNETGAAAVYCSELYEPDARELEKTL 115
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
+EL G + F +E+ N +G P+ +F+ + + ++++ S P K
Sbjct: 116 GEELAKSGAALHCLPGTLFFRPHEVRNGSGLPFKVFTPFWRHCMQRLPS-----MPLPQK 170
Query: 150 S-YLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKN 207
+ + N L + L D ++ S G +GA L F+ + +
Sbjct: 171 TTFTTNSFLQHSLTGLSCEQWQLLPDSPNWAADWHSY-WTPGEAGATETLKQFVTNTLAD 229
Query: 208 YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRD 267
Y R++P+ + +S LS H +G IS R+ + K + K +LS+L WRD
Sbjct: 230 YAQGRDFPARDASSRLSAHFHWGEISPRQAWAAVNKAPGSNEKDQ----HKFLSELGWRD 285
Query: 268 FYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSG 327
F +L+ +P++ ++ FK + + W+ + + F WC+G TGYP++D+ + +L +G
Sbjct: 286 FNHHLLFHFPHIADRPFKPSFSQMPWQGSD---ETFKAWCEGRTGYPIVDAGMRELWQTG 342
Query: 328 YMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFR 387
+MHNR+RM+ ASFL K++ + W+WG +F + L D DLA+N+G WQW A G + P+FR
Sbjct: 343 FMHNRVRMICASFLTKHLLLPWQWGARWFWDTLVDADLANNSGGWQWVAGCGADASPWFR 402
Query: 388 IFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPIL 447
IFNP++Q KKFD G ++R++LP+L+ LS++ + PW+A L AG+ LG +YP PI+
Sbjct: 403 IFNPMLQGKKFDGDGEYVRRWLPELAGLSDRDLQIPWEAPPLVLADAGVTLGSDYPFPIV 462
Query: 448 EHSLSKKNILKRYNFI 463
+H ++ L Y+ +
Sbjct: 463 DHKEARVAALDAYDAV 478
>gi|448739551|ref|ZP_21721563.1| deoxyribodipyrimidine photolyase [Halococcus thailandensis JCM
13552]
gi|445799170|gb|EMA49551.1| deoxyribodipyrimidine photolyase [Halococcus thailandensis JCM
13552]
Length = 465
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/464 (29%), Positives = 237/464 (51%), Gaps = 28/464 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD ++L R+ F+ ++ L + + SDL ++ + +
Sbjct: 27 VLPVFVFDPDVLQ------YASPPRVAFLLAALDSLQKSYRERGSDLYTVEGDPAEVLPE 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ + + + NHDY A RD+ +++ L G ++ D + E I G PY
Sbjct: 81 IADEHGVGELFWNHDYTGLARERDERVREALDEAGIAHEAFHDALHHEPGTITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+FS++ KW+++ K + YP L + N + ++ DLGF +
Sbjct: 141 SVFSYFGDKWLDREKE-----EPYPDPG-------GDALADVENEALPTIEDLGFDEP-- 186
Query: 183 SSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
++ G A+ L+ F I Y+ R YP+ GTS LS L +GTI +R++ K +
Sbjct: 187 AAEIPDAGTEAARDRLDAFCNDGIAEYDEGREYPADEGTSRLSQDLNYGTIGVREVTKRV 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + + + G + +L + +F+ +L+ P +V +++K + I W D+
Sbjct: 247 GEMREDADEDERDGIDAYRRELAFGEFFAHVLFYNPELVVENYKSYENPIDWREDD---G 303
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F W +G TGYP++D+ + QL YMHNR+RM+ ASFL K++ ++W+ G +F +L
Sbjct: 304 EFQAWKEGTTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLMLDWREGYAHFRERLV 363
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D D A++NGNWQW+AS+G +QP+FR+FNP+ Q +K+D +I+ Y+P+L + IH
Sbjct: 364 DHDTANDNGNWQWAASTGTDAQPYFRVFNPMTQGEKYDPDADYIKTYVPELDDTDPETIH 423
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
S + S + E A +YP PI EH ++ ++ + +
Sbjct: 424 SWNELSDEERESA----APDYPAPICEHGERREEAIEMFERARG 463
>gi|448659248|ref|ZP_21683216.1| deoxyribodipyrimidine photolyase [Haloarcula californiae ATCC
33799]
gi|445760750|gb|EMA12007.1| deoxyribodipyrimidine photolyase [Haloarcula californiae ATCC
33799]
Length = 465
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 141/466 (30%), Positives = 236/466 (50%), Gaps = 32/466 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VFIFD +LD R+ F+ ++ L ++ SDL++ + + +
Sbjct: 27 VVPVFIFDTAVLDHAGPP------RVAFMLDALDSLREWYRDKGSDLVVAEGDPTSVLPE 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + V DY A RD +++ L + ++ V+ E EI G PY
Sbjct: 81 LAAQHGAEKVTWGKDYSGLARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNAGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+++ +KW ++ + S + L + + +L DLGF +
Sbjct: 141 SVFTYFGRKWHDRENAGPYDPPS------------ADTLADVDGDAHPTLADLGFEEPEA 188
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
G A+ LL++F+ + + Y R++P+ TS LS HL+FGTI IR++
Sbjct: 189 DVPA--AGTEEARALLDDFLDENVYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRT 246
Query: 242 --FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
K + D + F SQL WR+FY +L+ +P+VV+ ++K + I WE+D
Sbjct: 247 QAAKEGTGGDRRDSVREFQ--SQLAWREFYTQVLFAHPHVVSSNYKSYENPIEWEND--- 301
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
++ W G TGYP++D+ + QL YMHNR+RM+ ASFL K++ I+W+ G +F K
Sbjct: 302 EELLQAWKDGDTGYPIVDAGMRQLRDEAYMHNRVRMIVASFLTKDLLIDWRHGYEWFREK 361
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D D A++NG WQW+AS+G +QP+FRIFNP+ Q + +D +I++Y+P+L + +
Sbjct: 362 LVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPNAEYIKEYVPELRDAAPEI 421
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH W S + YP P+++HS ++ L + +
Sbjct: 422 IHD-WNDCSLTQRRNA---APEYPDPVVDHSERREQALAMFERARG 463
>gi|183596981|ref|ZP_02958474.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827]
gi|188023634|gb|EDU61674.1| FAD binding domain of DNA photolyase [Providencia stuartii ATCC
25827]
Length = 483
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 248/456 (54%), Gaps = 42/456 (9%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+I F+ +++I L +L L + + A++ + + +D + NH Y
Sbjct: 51 LSSRQITFLHQNLIALRDSLAKLSIPLFCQTTPDFLSAAQWVLDFAQQQQVDHLYFNHQY 110
Query: 79 EPQAIIRDK-LIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
E RD+ LI + + ++ D ++ + N+ G+ Y +++ +++ +I ++
Sbjct: 111 ELNEHRRDEWLIHHPQRAF--RVHAFDDALLLPPKSVTNQKGEMYQVYTPFRRAFISQLV 168
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI----KTGASG 193
+ +S P ++++DL ++ I G S
Sbjct: 169 TTD--FRSLPAPQ--------------PRGEALAIDDLSLPLFAHHAVDIVPHFPAGESA 212
Query: 194 AKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
A+ L F + K+++Y +R+ PSI GTS LS +L G +S R+ + + + +
Sbjct: 213 ARQQLRQFCRLKVQHYQQHRDIPSIEGTSLLSPYLAIGVLSPRQCLNRLLAEYPPLFDSP 272
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
G FTWL++LIWR+FY +L +P + ++ F + ++I W N + +F W G T
Sbjct: 273 DSGAFTWLNELIWREFYHHLLVAFPRLCRHQPFIEWTNHIQW---NSSDADFKAWQLGQT 329
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
GYP++D+A+ QLN++G+MHNRLRM+TASFL+K++ I+W+ GE YF +L D LA+NNG
Sbjct: 330 GYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDLLIDWRLGEQYFMQQLIDGTLAANNGG 389
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP--WKASSY 429
WQWSAS+G +QP+FRIFNP Q KKFD QG FIR++LP+L + +KYIH+P W +++
Sbjct: 390 WQWSASTGTDAQPWFRIFNPTTQGKKFDPQGAFIRQWLPELQSVPDKYIHTPHEWAEANH 449
Query: 430 KLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ +YP PI++H ++ L + K+
Sbjct: 450 --------VTLDYPAPIVDHKQARLATLAAFEAGKS 477
>gi|328860259|gb|EGG09365.1| hypothetical protein MELLADRAFT_34389 [Melampsora larici-populina
98AG31]
Length = 578
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 162/450 (36%), Positives = 241/450 (53%), Gaps = 26/450 (5%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQ 81
RRI+F+ +++I+L + L+ + L K I K V++L + + N ++E
Sbjct: 117 RRIDFVLRNLIDLRLRLRELNIPLYTISIEKRKTIPKRVVELLNAWEVTRIFANIEHEVD 176
Query: 82 AIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKC 141
+ RD + G K D + E ++L K KPYS+FS +QK W + S+
Sbjct: 177 ELRRDIELINLCHPQGIKVDLSHDTCLVEPGKVLTKENKPYSVFSPWQKNWANIINSDLS 236
Query: 142 -YLQSYP-VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLN 199
+L + P +K + + +L + I S GF + + I+ A
Sbjct: 237 NHLDAAPEIKGNDPSAMDDDRLQSLFEVEIPSFIP-GFELPDEEAKRIRDYWE-ADTKPK 294
Query: 200 NFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI----- 254
+ ++ Y+ RN P + GTS LS +L G IS R V++ + K +K +
Sbjct: 295 STPTILEEYSTLRNRPDLPGTSRLSAYLAAGIISPRTCVRITLEKNGKQFKNQKLQVDQR 354
Query: 255 --GYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
G W S+L WRDFYQ +L +P V + ++F +++D ++WE D + W G T
Sbjct: 355 DTGIGMWQSELGWRDFYQHVLAAWPRVSMGQNFNQKFDPMVWEKD---ESKLEAWKLGKT 411
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
G+P ID+ + QL GYMHNR RM A FL K++ I+W+ GE +F L D DL SNNG
Sbjct: 412 GFPFIDACMRQLLEMGYMHNRGRMCVAMFLTKDLLIDWRIGEKWFMQHLVDGDLGSNNGG 471
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKA-SSYK 430
WQWS+S+GC SQP+FRIF P+ QS+K D G FIRKY+P+L+ LS K IH P+KA S K
Sbjct: 472 WQWSSSTGCDSQPYFRIFAPLSQSEKSDPNGDFIRKYVPELNSLSGKAIHDPYKALSPDK 531
Query: 431 LEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+K G YPKPI++HS+ +K L RY
Sbjct: 532 FKKLG------YPKPIVDHSVVRKRALVRY 555
>gi|323496501|ref|ZP_08101559.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
gi|323318778|gb|EGA71731.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
Length = 474
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 149/457 (32%), Positives = 252/457 (55%), Gaps = 31/457 (6%)
Query: 19 SQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMI 74
SQ + + + I + + EL +L + LI YA + + V + ++ +V +
Sbjct: 40 SQHHMAPMQADLIKRRLFELQNDLASLGVPLIYAETSDYASSVDVVCNWVKQYSVTSVHL 99
Query: 75 NHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIE 134
N +YE + RD ++ L + + D+ F ++NK G + +F+ Y++ +++
Sbjct: 100 NKEYEINEVRRDDKAEQALTRLDVVLHRHDDKCQFIPGSVVNKQGHYFKVFTPYKRAYLQ 159
Query: 135 KVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGA 194
K L+ +PV+ V+ K K+ ++ S D F S +
Sbjct: 160 K-------LEQFPVQVQKVTAVNGQKA-KVDECDLFS-KDCSFRYPTEESQAYQVSTEQI 210
Query: 195 KILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRK-LVKLIFKFIKKHYKTD 252
L +F+K+ +Y R++P+I GTS LS +L G +S+R+ + +L+++ +
Sbjct: 211 LDQLRSFVKEHSDDYQDERDFPAIEGTSRLSPYLAIGALSVRQCMARLLYQQTAPLSE-- 268
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
G TWLS+LIWR+FYQ +LY P + +SF ++ WE+ + W +G T
Sbjct: 269 --GRQTWLSELIWREFYQHLLYFEPKLSRGESFLPWGVHLRWEN---CPRRIKAWQQGQT 323
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
GYP++D+A+ QLN +G+MHNRLRM+ ASFL+K++ ++W+ GE+YF +KL D + A+NNG
Sbjct: 324 GYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLQVDWRVGEDYFMSKLVDGEYAANNGG 383
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL 431
WQW AS+GC QP+FRIFNP Q ++FD +G F+R+++P+L+ L +K IH P K S K
Sbjct: 384 WQWCASTGCDGQPYFRIFNPTTQGERFDPKGEFVRRWVPELADLPDKQIHQPSKWLSVK- 442
Query: 432 EKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILN 468
G +YP PI++H + ++ L Y K+ L+
Sbjct: 443 -------GSSYPAPIVDHKVQREITLANYKNAKDFLD 472
>gi|358451343|ref|ZP_09161777.1| deoxyribodipyrimidine photo-lyase [Marinobacter manganoxydans
MnI7-9]
gi|357224576|gb|EHJ03107.1| deoxyribodipyrimidine photo-lyase [Marinobacter manganoxydans
MnI7-9]
Length = 467
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 220/400 (55%), Gaps = 28/400 (7%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSF 127
+ A+ N +Y RDK +K +G Y+DQ + EIL + PYS+F+
Sbjct: 94 GVTALHFNEEYGVNERKRDKALKHRFDQLGIAVRKYRDQTVAPVGEILTQQNDPYSVFTP 153
Query: 128 YQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI 187
+ ++W ++ L +P N V ++ I + L +
Sbjct: 154 FSRRWRSWIEETHPGL--FPTPKARGNAVSPEQIDSIPEAFRDAPEPL-----------V 200
Query: 188 KTGASGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
TG A L F++K Y R++P+I+GTS +S +L G +S R+ LI
Sbjct: 201 ATGEDAAHDQLERFLEKRGGAYKEKRDFPAIDGTSQISPYLANGVLSGRQC--LIAGRQA 258
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLN 305
+ + G TW++++ WRDFY ILY +P V ++++FK E + + W N F
Sbjct: 259 QGAGGNQEGLGTWITEIAWRDFYINILYHFPRVSMHRAFKPETETLEW---NTPGDRFEA 315
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W G TG P++D+A+ QLN +G+MHNRLRM+TA +L KN+ I+W+ GE YF +KL D L
Sbjct: 316 WKTGNTGVPIVDAAMRQLNRTGWMHNRLRMITAMYLTKNLFIDWRLGEAYFMSKLIDGFL 375
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASNNG WQWSAS+G + P+FR+FNP+ QS++FD +G FIR+++P+L+KL +K IH P
Sbjct: 376 ASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPKGDFIREWIPELAKLDSKRIHDPGA 435
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
K G+I K YP+ I++ S+K + ++ +KN
Sbjct: 436 -------KGGVIP-KGYPRQIVDLKESRKEAIAKFQELKN 467
>gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5]
gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisB5]
Length = 487
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 243/462 (52%), Gaps = 23/462 (4%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIE-----FIFKSIIELSINLQNYDSDLIIRYAIASKE 59
C+++FD++ LRS + R + ++ +S+ L+ +L+ + LI+R A+
Sbjct: 37 CIYVFDEDSAQ-LRSP---QARPLGGASRWWLAQSLRALAASLEKRGARLILRRGPAAAI 92
Query: 60 IKKLVIKLNIDAVMINH-DYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
I +L +++ AV N + P + D L + L V G ++ ++ E+ K
Sbjct: 93 IAELARQVDASAVHWNEIEIAPHRAVADDLAEA-LSVAGIDHHRHRGDLLASPAEVRTKE 151
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
G+ +F+ + ++ + K P L+ S +++ ++ + +
Sbjct: 152 GRGLRVFTPFWRRVLGLGDPPKLL----PAPKTLSAAQGPSG--DQLDSWMLEPTEPDWA 205
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
S GA A+ L F+ + Y R+ P TS LS HLRFG IS R+ V
Sbjct: 206 GGLRESWTPGEGA--AQDNLTAFLDALPGYTEGRDRPDCAATSRLSPHLRFGEISPRQ-V 262
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+F +LS+L WR+F + +L+ +P++ ++ + +D W +D
Sbjct: 263 WYAARFAAAERPAIAGDIDKFLSELGWREFCRHLLHDHPDLAERNLQASFDAFPWITDAA 322
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
A W +G TGYP++D+ + +L +G MHNR+RMV ASFL+K++ I+W+ GE +F +
Sbjct: 323 A---LHAWQRGCTGYPIVDAGMRELWHTGVMHNRVRMVVASFLVKHLLIDWRCGEQWFWD 379
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D D SN NWQW A SG + P+FR+FNPI+Q +KFD G ++R+++P+L+ L K
Sbjct: 380 TLVDADAGSNPANWQWVAGSGADAAPYFRVFNPILQGEKFDPAGDYVRRWVPELASLPAK 439
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+IH PW A+ ++L AG+ LG NYP+PI++H + ++ L Y
Sbjct: 440 FIHQPWTATPFELAAAGVTLGGNYPEPIIDHRVGRERALAAY 481
>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
Length = 471
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/447 (34%), Positives = 245/447 (54%), Gaps = 33/447 (7%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+I L +L L++R + I +LV + +++V N YEPQ I RDK I
Sbjct: 50 WLHHSLIALGKSLNQQGLSLVLRKGSPLEIILELVTQYGLESVYWNRCYEPQVIARDKKI 109
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K L G K S+ ++ E I NK G + +F+ Y K+ C
Sbjct: 110 KLALGEKGIKVHSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQ---------C-------- 152
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCK-------SNLSSLGIKTGASGAKILLNNFI 202
+ N+ L K I+ +DLG K + S G GA+ LN F+
Sbjct: 153 RQILNIPSPFMLTKRPRGIEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLNEFV 212
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ Y R++P+ N TS LS HL FG IS +++ + + K D +LS
Sbjct: 213 VHHLSGYKRERDFPAKNATSRLSPHLHFGEISPWVILRAL-ELAKLEQTCDLASLEHFLS 271
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+L WR+F +LY +P + ++F+KE+D W++D ++ W KG TGYP+ID+ +
Sbjct: 272 ELGWREFSVYLLYHFPKLDCENFRKEFDAFPWQND---EQLLTCWQKGMTGYPIIDAGMR 328
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
+L ++GYMHNR+RM+ ASFL K++ I+W+ G +F + L D DLA+N+ +WQW A G
Sbjct: 329 ELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGAD 388
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ P+FRIFNP++QS+KFD G++IR+++P+L++L+++ IH PW ++ + I LGK
Sbjct: 389 AAPYFRIFNPVLQSQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDAN----ASSIFLGKK 444
Query: 442 YPKPILEHSLSKKNILKRYNFIKNILN 468
YPKPI++H ++ L Y IK ++
Sbjct: 445 YPKPIIDHQEARTKALSYYQQIKKGMD 471
>gi|417927065|ref|ZP_12570453.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|340764939|gb|EGR87465.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
Length = 474
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/470 (32%), Positives = 243/470 (51%), Gaps = 45/470 (9%)
Query: 5 CVFIFDKNILD--PLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
CVF F++ P R+Q + + F + + E I+L DLI + ++++ +
Sbjct: 31 CVFQFNQEQFSQPPSRNQSAVVASVLAFK-EELKEKGIDLYVMHGDLITCFEQLAQQLDQ 89
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
V N+D RD+ + + +Y+D + EI N++G+ Y
Sbjct: 90 WT------DVYFNYDESGFGRRRDQQAAQWFRAKKINIHAYQDHYLHGSQEIKNQSGQYY 143
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPV------KSYLNNLVHSSKLHKIINNNIISLNDLG 176
IF+ Y + W +C + PV ++L+ + + L I + ND+
Sbjct: 144 KIFTPYYRVW-------QCLPKETPVVVDLSRGNWLSLKIPQATLELIETLKDTTFNDVM 196
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
K AK LN+F+ ++ +Y+ R++PS GTS+LS +LR G +SIR
Sbjct: 197 TVKE-------------AKERLNHFVDNQLADYDTTRDFPSRCGTSFLSPYLRLGMVSIR 243
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + + G +L +L WRDFY M+ PN + ++ + ++ W+
Sbjct: 244 TVYQAVSQ------APASSGQAVFLKELAWRDFYHMVYVANPNQKKLAIQEAFRHLEWDE 297
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ A F W +G TGYP+ID+A+ QL ++G+MHNRLRMV ASFL K++ I+W+ GE Y
Sbjct: 298 NPAA---FKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQIDWRLGEAY 354
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F +L D+D ASN G WQW+AS G + P+FRIFNP+ Q K+FD G FIR YLP L +
Sbjct: 355 FQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIRSYLPSLVSV 414
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
Y++ PWK E I+G++YP P+++H+ +K + RY + K
Sbjct: 415 PQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAEQRKRAIARYEWAKE 464
>gi|416285588|ref|ZP_11647810.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905]
gi|320179459|gb|EFW54416.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905]
Length = 472
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/448 (33%), Positives = 242/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + + +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVVCEGFD--DSVILPPGAVMTGNHEMHKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAVPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCENGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|386743236|ref|YP_006216415.1| deoxyribodipyrimidine photolyase [Providencia stuartii MRSN 2154]
gi|384479929|gb|AFH93724.1| deoxyribodipyrimidine photolyase [Providencia stuartii MRSN 2154]
Length = 483
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 248/456 (54%), Gaps = 42/456 (9%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+I F+ +++I L +L L + + A++ + + +D + NH Y
Sbjct: 51 LSSRQITFLHQNLIALRDSLAKLSIPLFCQTTPDFLSAAQWVLDFAQQQQVDHLYFNHQY 110
Query: 79 EPQAIIRDK-LIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
E RD+ LI + + ++ D ++ + N+ G+ Y +++ +++ +I ++
Sbjct: 111 ELNEHRRDEWLIHHPQRAF--RVHAFDDALLLPPKSVTNQKGEMYQVYTPFRRAFISQLV 168
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI----KTGASG 193
+ +S P ++++DL ++ I G S
Sbjct: 169 TTD--FRSLPAPQ--------------PRGEALAIDDLSLPLFAHHAVDIAPHFPAGESA 212
Query: 194 AKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
A+ L F + K+++Y +R+ PSI GTS LS +L G +S R+ + + + +
Sbjct: 213 ARQQLRQFCRLKVQHYQQHRDIPSIEGTSLLSPYLAIGVLSPRQCLNRLLAEYPPLFDSP 272
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
G FTWL++LIWR+FY +L +P + ++ F + ++I W N + +F W G T
Sbjct: 273 DSGAFTWLNELIWREFYHHLLVAFPRLCRHQPFIEWTNHIQW---NSSDADFKAWQLGQT 329
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
GYP++D+A+ QLN++G+MHNRLRM+TASFL+K++ I+W+ GE YF +L D LA+NNG
Sbjct: 330 GYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDLLIDWRLGEQYFMQQLIDGTLAANNGG 389
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP--WKASSY 429
WQWSAS+G +QP+FRIFNP Q KKFD QG FIR++LP+L + +KYIH+P W +++
Sbjct: 390 WQWSASTGTDAQPWFRIFNPTTQGKKFDPQGAFIRQWLPELQSVPDKYIHTPHEWAEANH 449
Query: 430 KLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ +YP PI++H ++ L + K+
Sbjct: 450 --------VTLDYPAPIVDHKQARLATLAAFEAGKS 477
>gi|417128682|ref|ZP_11975469.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0246]
gi|386143638|gb|EIG90114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0246]
Length = 472
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/445 (32%), Positives = 244/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + IK++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVLCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 KL--DYPQPIVDHKEARLRTLAAYE 466
>gi|448601043|ref|ZP_21656326.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
gi|445734646|gb|ELZ86204.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
Length = 484
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/478 (28%), Positives = 242/478 (50%), Gaps = 37/478 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD+++LD + R+ ++ ++ EL + SDL++ +
Sbjct: 27 VAPLFVFDRDVLDHAGAP------RVRYLLDALSELRDAYRERGSDLLVARGDPRTVVPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ + + + DY A RD ++ L G D + I G Y
Sbjct: 81 VAAAFDAERAVWGIDYSGLARERDADVRLALDEAGVAREPVHDAIFHPPGSITTNAGDTY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYP------------VKSYLNNLVHSSKLHKIINNNII 170
S+++++ KKW ++ K + YP ++S +L + I +
Sbjct: 141 SVYTYFWKKWCDRDKPDP-----YPEPDADDLADAATLESAAEDLTNGDAEFDIAVGGLP 195
Query: 171 SLNDLGFCKSNLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRF 229
+++DLGF + + S G A+ L+ F I Y +R+YP+ + TS LS L+F
Sbjct: 196 TISDLGFEEPSASVQ--SAGTEAARERLSAFCADAIYRYADDRDYPTRDATSRLSTDLKF 253
Query: 230 GTISIRKLVKLIFKFIKK--HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKE 287
GTI IR++ + + + + F SQL WR+FY +L +PNVV +++K+
Sbjct: 254 GTIGIREVYAATAAAREGVGGERDESVEEFQ--SQLAWREFYAHVLREHPNVVTENYKEY 311
Query: 288 YDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGI 347
++I W D+ + W G TGYP++D+ + QL YMHNR+RM+ ASFL K++
Sbjct: 312 EEDIAWRDDD---EELAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLC 368
Query: 348 NWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRK 407
+W+ G +F L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D G +I++
Sbjct: 369 DWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKR 428
Query: 408 YLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
Y+P+LS ++ IH + + + E+ L +YP+PI++H+ ++ + + +
Sbjct: 429 YVPELSDVTANTIHEWHELTDLERER----LAPDYPEPIVDHAERRERAISMFEAARG 482
>gi|389623797|ref|XP_003709552.1| deoxyribodipyrimidine photo-lyase [Magnaporthe oryzae 70-15]
gi|351649081|gb|EHA56940.1| deoxyribodipyrimidine photo-lyase [Magnaporthe oryzae 70-15]
Length = 629
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 244/449 (54%), Gaps = 29/449 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++F +S+ L +L D L + + +K+ V+ L + + N +YE
Sbjct: 187 RVDFTLRSLEVLRQDLAKLDIPLHVETVDDRRAMKQRVLSLMEEWDASHLYANMEYEVDE 246
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + + L G D + ++ TG+ Y+++S + + W++ + +
Sbjct: 247 LRREANLVRLLAENGKSMEVVHDTCVVPPGKLQTGTGRQYAVYSPWYRAWLKHLSGDPEL 306
Query: 143 LQSYPVKSYLNNLVHS-SKLHKIINNNIIS------LNDLGFCKSNLSSLGIKTGASGAK 195
L+ P++ N + K + + I + +N+ + L+++ G A+
Sbjct: 307 LE--PMEPPHKNPASAREKFSHLFDGKIPAAPKSKQMNEEE--QQRLAAM-WPAGEHEAR 361
Query: 196 ILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI-KKHYKTDC 253
L+ FIK+ I Y RN+P+ +GTS +S+HL GT+S R V L K +
Sbjct: 362 KRLDAFIKRRIDGYAAKRNFPADDGTSSISVHLAAGTLSARTAVHLAHKASGTRKLDGGS 421
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
G TW+S++ WRDFY+ +L +P V +NK FK EY NI W +Y ++F WC+G TG
Sbjct: 422 QGIQTWISEVAWRDFYKHVLVNWPYVCMNKPFKPEYSNIAW---SYDMEHFAAWCEGRTG 478
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
+P++D+A+ QL +G+MHNR RM+ ASFL K+ I+W+ GE YF L D D ASNNG W
Sbjct: 479 FPIVDAAMRQLRGTGWMHNRCRMIVASFLAKDFLIDWRMGERYFMENLVDGDFASNNGGW 538
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW-KASSYKL 431
++AS G QP+FR+FNP++QS+KFD G +IRK++P+L + K IH P+ + +
Sbjct: 539 GFAASVGVDPQPYFRVFNPLLQSEKFDPNGEYIRKWIPELKGIKGKAIHDPYGRGCGVEA 598
Query: 432 EKAGIILGKNYPKPILEHSLSKKNILKRY 460
+K G YPKP+++H ++ LK Y
Sbjct: 599 KKKG------YPKPLVDHKGCRERALKAY 621
>gi|284800868|ref|YP_003412733.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
gi|284994054|ref|YP_003415822.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
gi|284056430|gb|ADB67371.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
gi|284059521|gb|ADB70460.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
Length = 467
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 221/397 (55%), Gaps = 24/397 (6%)
Query: 70 DAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQ 129
D V N D RD+ + + ++ D + E+ + Y IF+ Y
Sbjct: 88 DKVYFNLDETGYGAKRDEAAQAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYY 147
Query: 130 KKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
KKW E++K P K L K I ++ + F + + +
Sbjct: 148 KKWREEIKET-------PFKMTL-------KPENIWKESLFPKYEEQFAEMTCDLPILDS 193
Query: 190 GASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L NFIK I +Y+ R++P ++ TS+LS +LR G IS+R I++ ++++
Sbjct: 194 GERAANTRLANFIKHDIADYDKARDFPELDKTSHLSRYLRTGEISVR----TIWQALQEN 249
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
T+ F +L WRDFY MI +PN N+ ++ Y I WE++ ++ F W
Sbjct: 250 EATEGRAIFE--KELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN---REFFKAWQD 304
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG+PL+D+A+ QL +G+MHNRLRMVTASFL K++ I+W++GE YF L D+D ASN
Sbjct: 305 GKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLLIDWRFGEKYFQQMLIDYDPASN 364
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+ L +K+IH P K S
Sbjct: 365 IGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIRKYVKELANLPDKFIHQPEKMSE 424
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ ++ G++LGK+YP P+++H +K + RY F K
Sbjct: 425 IEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKE 461
>gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 483
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 231/442 (52%), Gaps = 18/442 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L+ DL+IR + + ++ L+ + V+ N YEP I RD I
Sbjct: 51 WLHHSLAALGEDLRARGVDLVIRQGASLETLQALIRETGAQQVLWNRLYEPALIARDTGI 110
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K++L+ G + S+ ++FE + + G PY +F+ + K C PV
Sbjct: 111 KQQLRDQGIRTQSFNAALLFEPWTVAKQDGTPYKVFTPFWKA---------CLGLGVPVD 161
Query: 150 SYLNNLVHSSKLHKIINNNIISLN---DLGFCKSNLSSLGIKTGASGAKILLNNFI-KKI 205
+ SL D+ + + + L + G +GA L F+ + +
Sbjct: 162 VTPAPERIQGPAQLPPGETLKSLGLLPDIDWA-AGFTEL-WQPGEAGALARLAEFMDEAV 219
Query: 206 KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHY-KTDCIGYFTWLSQLI 264
+Y+ RN P +G+S LS +L FG I R+ +H K G ++L ++
Sbjct: 220 ADYDEMRNRPDRDGSSRLSPYLHFGEIGPRQAAAACQVAKDRHGGKAAHQGIDSFLREIG 279
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
WR+F +LY +P ++ + + W + ++ W +G TG PL+D+A+ L
Sbjct: 280 WREFAHHLLYHFPRTSDEPLDPRFRKLPWRELD--EETLRAWQRGRTGIPLVDAAMRALW 337
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
++G+MHNR+RM+ AS L KN+G +W G +F + L D DLA N WQW+A G + P
Sbjct: 338 ATGWMHNRVRMIVASLLTKNLGAHWLTGARWFWDTLVDADLAGNTLGWQWTAGCGADAAP 397
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FR+FNP++Q ++FD G ++R+++P+L+KL KYIH PW+A L+ AG+ LG NYP+
Sbjct: 398 YFRVFNPVLQGERFDPNGDYLRQWVPELAKLPAKYIHRPWEAPEAILKAAGVRLGGNYPR 457
Query: 445 PILEHSLSKKNILKRYNFIKNI 466
PI++ + S++ L+ + IK
Sbjct: 458 PIVDLAESRRQALEMWEVIKGT 479
>gi|419288166|ref|ZP_13830281.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11A]
gi|419293503|ref|ZP_13835562.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11B]
gi|378135668|gb|EHW96971.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11A]
gi|378145700|gb|EHX06856.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11B]
Length = 472
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAMHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|421506155|ref|ZP_15953086.1| deoxyribodipyrimidine photolyase [Pseudomonas mendocina DLHK]
gi|400343105|gb|EJO91484.1| deoxyribodipyrimidine photolyase [Pseudomonas mendocina DLHK]
Length = 477
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/440 (32%), Positives = 235/440 (53%), Gaps = 25/440 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ +LS L + L+IR + A I ++ + N+ AV N +Y
Sbjct: 48 KVDFWLRNLAQLSRALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+RD+ + L + S+ DQ++F+ IL ++G + ++S ++K E +
Sbjct: 108 NLRDRCVAAYLAQQDIAWHSHLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPG 167
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L + PV L + H + + L SL G A+ L F
Sbjct: 168 LVARPVAQAPTPLASDAIPHAV--------DGFAMPSEQLRSL-WPAGEEAARQRLERFA 218
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
++I Y R++P++ GTS LS +L G +S R+ + + + + G TW++
Sbjct: 219 DEQIGYYKDERDFPALPGTSQLSPYLAAGVLSPRQCLHAALAANRGEFDSGNAGVVTWVN 278
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+L+WR+FY+ IL YP V +++F+ E + + W A + W +G TG P+ID+A+
Sbjct: 279 ELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRR---APEELAAWQQGRTGLPIIDAAM 335
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL +G+MHNRLRM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 336 RQLLETGWMHNRLRMIVAMFLTKNLLIDWREGERFFMCHLIDGDLAANNGGWQWSASTGT 395
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
+ P+FRIFNPI QS+KFD +G FIR +LP+L+ L+ + IH P G+
Sbjct: 396 DAAPYFRIFNPISQSQKFDPEGRFIRHWLPELAGLNKRDIHDP-------ASLGGLFAPA 448
Query: 441 NYPKPILEHSLSKKNILKRY 460
YP+PI++ S S++ L +
Sbjct: 449 GYPRPIVDLSRSRERALAAF 468
>gi|146306105|ref|YP_001186570.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
ymp]
gi|145574306|gb|ABP83838.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
ymp]
Length = 477
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/440 (32%), Positives = 234/440 (53%), Gaps = 25/440 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ LS L + L+IR + A I ++ + N+ AV N +Y
Sbjct: 48 KVDFWLRNLAHLSRALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+RD+ + L + S+ DQ++F+ IL ++G + ++S ++K E +
Sbjct: 108 NLRDRCVAAYLAQQDIAWHSHLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPG 167
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L + PV L + H + + L SL G A+ L F
Sbjct: 168 LVARPVAQAPTPLASDAIPHAV--------DGFAMPSEQLRSL-WPAGEEAARQRLERFA 218
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
++I Y R++P++ GTS LS +L G +S R+ + + + + G TW++
Sbjct: 219 DEQIGYYKDERDFPALPGTSQLSPYLAAGVLSPRQCLHAALAANRGEFDSGNAGVVTWVN 278
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+L+WR+FY+ IL YP V +++F+ E + + W A + W +G TG P+ID+A+
Sbjct: 279 ELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRR---APEELAAWQQGRTGLPIIDAAM 335
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL +G+MHNRLRM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 336 RQLLETGWMHNRLRMIVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGT 395
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
+ P+FRIFNPI QS+KFD +G FIR +LP+L+ L+ + IH P G+
Sbjct: 396 DAAPYFRIFNPISQSQKFDSEGRFIRHWLPELAGLNKRDIHDP-------ASLGGLFAPA 448
Query: 441 NYPKPILEHSLSKKNILKRY 460
YP+PI++ S S++ L +
Sbjct: 449 GYPRPIVDLSRSRERALAAF 468
>gi|218549732|ref|YP_002383523.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ATCC
35469]
gi|218357273|emb|CAQ89908.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia
fergusonii ATCC 35469]
Length = 472
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 242/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIETAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGRLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNSSG+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSSGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI++H ++ L Y K
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYEEAK 469
>gi|417252936|ref|ZP_12044695.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0967]
gi|386216867|gb|EII33356.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0967]
Length = 472
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIVWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|422728872|ref|ZP_16785278.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012]
gi|315150502|gb|EFT94518.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012]
Length = 477
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 218/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y NR++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFIDQKLQSYENNRDFPYQDQTSHLSTFLRTGELSIRTIRQELAS---- 253
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 254 --APSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND---PEMFAKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|338738139|ref|YP_004675101.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
gi|337758702|emb|CCB64527.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
Length = 487
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 235/440 (53%), Gaps = 18/440 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ KS+ LS ++ + LI+R +K+LV + AV + YEP A ++ +
Sbjct: 58 WLAKSLEALSHDIAQRGARLILRRGDTESILKRLVDESGATAVYVTRGYEPWAKGLEEKL 117
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K G F + +++ E ++ +G Y +F+ + W + + + +
Sbjct: 118 HKSFGGSGVVFKRFGGRLLREPEDLRTSSGAAYQVFTPF---W-------RVFRKEFSAP 167
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS---SLGIKTGASGAKILLNNFIKK-I 205
L H + I ++ IS L K + S + + G GA++ L NF+ + +
Sbjct: 168 KALAAPRHLGPVPDAIASDDISDWKLAPTKPDWSGGLAEAWRPGERGAQLRLKNFVSEGL 227
Query: 206 KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIW 265
NY+ R+ + GTS LS HL FG IS + + + + +D T+L +L W
Sbjct: 228 SNYDDGRDRLNAEGTSRLSPHLAFGEISPAACWRAAAEASHQTHSSDG-AVETFLKELAW 286
Query: 266 RDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNS 325
R+F +L+ +P + ++ + E+ W + N W +G TGYP++D+ + +L +
Sbjct: 287 REFSYALLFQFPQMPDEPLRDEFAAFPWAKSS---ANLKAWQRGLTGYPVVDAGMRELWA 343
Query: 326 SGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPF 385
+GYMHNR RM+ ASFL K++ + W GE +F + L D DLA+N NWQW A G + P+
Sbjct: 344 TGYMHNRARMIAASFLTKHLLLPWTSGEAWFWDTLVDADLANNAANWQWVAGCGADAAPY 403
Query: 386 FRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKP 445
FRIFNP++Q +KFD G ++R+++P+L +L + IH PW A + L++AG+ +GKNYP P
Sbjct: 404 FRIFNPVLQGEKFDPDGDYVRRWVPELQRLPSADIHKPWAADATTLKRAGVAIGKNYPFP 463
Query: 446 ILEHSLSKKNILKRYNFIKN 465
I++H ++ L Y+ +K+
Sbjct: 464 IVDHKEARARALTAYDRVKS 483
>gi|417274897|ref|ZP_12062237.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2.4168]
gi|425114064|ref|ZP_18515887.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0566]
gi|425120593|ref|ZP_18522289.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0569]
gi|432659940|ref|ZP_19895591.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE111]
gi|386233325|gb|EII65310.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2.4168]
gi|408568638|gb|EKK44664.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0569]
gi|408572263|gb|EKK48183.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0566]
gi|431202291|gb|ELF00984.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE111]
Length = 472
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMSECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 TL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|218677191|ref|YP_002396010.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
gi|218325459|emb|CAV27611.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
Length = 486
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 155/455 (34%), Positives = 253/455 (55%), Gaps = 33/455 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL--NIDAVMINHDYEPQAII 84
+ +FI++ + + L + L+ A + +I L +DA + + EP+ +
Sbjct: 48 KADFIYRHLKQFESQLAEFGITLLHLKATDFNDQASQLINLCKQVDATCVYANSEPE--V 105
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQ 144
++L K L G K I +LNK G+ + +F+ ++ W+++V++
Sbjct: 106 DEQLRDKRLIATGIKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICS 165
Query: 145 SYPVKSYLNNLVHSSKLHKIIN---NNIISLN----------DLGFCKSNLSSLGIKTGA 191
PV S + SS+ + N N LN D F +++ +
Sbjct: 166 HAPVHSTGSAQAGSSETDSLQNLSPQNPTPLNQSLSGFSGEYDFDFPRTDSERWPLSQDV 225
Query: 192 SGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL-VKLIFKFIKKHYK 250
+ ++ N K+ +Y+ R+ PSI GTS LS +L G +S R L ++LI + +
Sbjct: 226 LES-VIPNFLANKVNDYSRLRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFD 284
Query: 251 TDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKS-FKKEYDNILWESDNYAKKNFLNWCKG 309
T + F+WL++LIWRDFY+ +++ +P +V + F+++Y+ + W DN +F WC+G
Sbjct: 285 TQ-LPAFSWLNELIWRDFYKHLMFHHPILVKGANFQQKYNGLDWYHDN---PSFKAWCEG 340
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TGYPL+D+A+ QL +G+MHNRLRMV ASFL K++ I+W+WGE +F + L D D ++NN
Sbjct: 341 KTGYPLVDAAMRQLVETGWMHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANN 400
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSY 429
G WQW++S+GC +QP+FRIFNPI QS+KFD +GIFIRKY+P+L + +K++H P
Sbjct: 401 GGWQWASSTGCDAQPYFRIFNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDF--- 457
Query: 430 KLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ K GI Y +PI+EH K+ L+ F K
Sbjct: 458 -IAKNGI--DSEYWQPIVEH---KEARLRALAFFK 486
>gi|120598121|ref|YP_962695.1| deoxyribodipyrimidine photo-lyase [Shewanella sp. W3-18-1]
gi|120558214|gb|ABM24141.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. W3-18-1]
Length = 493
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 219/400 (54%), Gaps = 25/400 (6%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSF 127
NI V + E +RD+ G + + +LN +G+ Y +F+
Sbjct: 111 NITRVFAGSEPEINERVRDQACIDA----GVPLLLTDEHCLLAPGTVLNLSGEMYRVFTP 166
Query: 128 YQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI 187
+ +KW E + P L ++ K + N + SS
Sbjct: 167 FSRKWREIAARHAILPLGVPAP--LGPVLPEPKALNLAVNKV-------------SSEQW 211
Query: 188 KTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G AK LL +F+ +K+++Y +R++P+++GTS +S +L G +S R+ V + +
Sbjct: 212 GAGEGQAKRLLCDFVQQKVQDYKQDRDFPALDGTSCISPYLAIGVLSARQCVAALLQRFP 271
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLN 305
+ D TWL++L+WR+FY+ +L +P++ N +F ++ D + W ++ + F
Sbjct: 272 EVIVDDTSLGRTWLNELVWREFYRHLLVAFPDLSKNYNFNRQADQVQWRNN---IEEFKA 328
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
WC+G TGYP++D+A+ QLN +G+MHNRLRMV ASFL K++ I+W+WGE YF KL D DL
Sbjct: 329 WCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQKLIDGDL 388
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
A+NNG WQWSA GC +QP+FRIFNP+ QS+KFD G FIRKYLP+L+ K +H P
Sbjct: 389 AANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRKYLPELASWGIKQLHQPNT 448
Query: 426 ASSYKLEKAGIILGK-NYPKPILEHSLSKKNILKRYNFIK 464
A + L K + + YP I++H+ ++ L +K
Sbjct: 449 AKTPLLFKQPLFAEQAAYPSAIVDHTEARVRALSVLGVLK 488
>gi|448414324|ref|ZP_21577463.1| deoxyribodipyrimidine photolyase [Halosarcina pallida JCM 14848]
gi|445682617|gb|ELZ35034.1| deoxyribodipyrimidine photolyase [Halosarcina pallida JCM 14848]
Length = 468
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/465 (28%), Positives = 232/465 (49%), Gaps = 28/465 (6%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV F+FD ++L G R+ F+ ++ L + SDL++ +EI
Sbjct: 26 EVVPAFVFDDDVL---AHAGAA---RVRFMLDALAGLREQYRERGSDLVVARGDPVEEIP 79
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L + + V+ N DY A RD +++ L G S D + + I G P
Sbjct: 80 RLAAAYDAERVVWNQDYSGLARTRDAAVRRALDDAGVGRESVHDAIHHQPGSITTNAGDP 139
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
YS+++++ KKW ++ K+ YP + L + ++ + DLGF +
Sbjct: 140 YSVYTYFWKKWRDREKAGP-----YPAPD-------ADSLADVTGEDLPGIGDLGFEEPT 187
Query: 182 LSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
G A+ L++F I Y +R YP + TS LS L++GT+ +R++ +
Sbjct: 188 AEV--PDAGTEAARERLSSFCADAIYRYAEDREYPERDATSRLSTDLKWGTVGVREVYEA 245
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + + + SQL WR+FY +LY P VV +++K + I W D A
Sbjct: 246 TEEAAAEADGEEAESVEEFQSQLAWREFYAHVLYFNPEVVTENYKSYENGIEWRDDAAA- 304
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
W G TGYP++D+ + QL + YMHNR+RM+ ASFL K++ ++W+ G +F L
Sbjct: 305 --LTAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMLVASFLTKDLLLDWREGYAHFREHL 362
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D D A++NG WQW+AS+G +QP+FR+FNP Q +++D + +I++++P+L + +
Sbjct: 363 ADHDTANDNGGWQWAASTGTDAQPYFRVFNPATQGERYDPEATYIKEHVPELRDADPETV 422
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
H + S + E A +Y PI++HS ++ + + +
Sbjct: 423 HDWPELSPTERESA----APDYVAPIVDHSERREAAISMFEDARG 463
>gi|414596902|ref|ZP_11446474.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE E16]
gi|390482266|emb|CCF28535.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE E16]
Length = 478
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/463 (32%), Positives = 248/463 (53%), Gaps = 29/463 (6%)
Query: 13 ILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL-NIDA 71
I+DP + + + F F S NL N + L++ + +KL L I
Sbjct: 36 IVDPEQIETTASLNQSAF-FASAKVFQANLANENIHLLVLKGTPESQFEKLTAALPEISD 94
Query: 72 VMINHDYEPQAIIRDKLIKKELKV-IGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
+ N D RD+ + + +G K +Y D + NEI G Y IF+ Y K
Sbjct: 95 LYFNFDERGYGRQRDQQVAHHCQTTLGLKTHAYIDYNLHSANEIKKADGAGYQIFTPYFK 154
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSS-----L 185
+WI K PVK + +L + ++ N + L+ G S ++ L
Sbjct: 155 RWITLPKPK-------PVKVSVTSL----QEKQMANIEPLHLHQEGLLTSLINEKHDKQL 203
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G + A L +FI+ + Y+ R+ P ++ TS+LS +LR G I+IR + + +
Sbjct: 204 VGQVGEAKALQTLKDFIQSHLAEYDTQRDLPFLDATSHLSRYLRTGEIAIRTIYQAVIN- 262
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFL 304
+ + G T++ +L WRD+Y MI P +S + E+ I W +++ +FL
Sbjct: 263 -----EPESEGQQTFIKELAWRDYYNMIYAMNPQQNTQSLRPEFQKIAWRNNH---NDFL 314
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W G TG+P++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D+D
Sbjct: 315 LWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRWGEQYFHDQLLDYD 374
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
ASN G WQW+AS+G S P+FRIFNP QS+KFD G FI++++P+LS+++N IH P
Sbjct: 375 PASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFDPDGQFIKQFVPELSQITNDKIHEPQ 434
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+ + ++ + L K+YPKP++ H ++ ++ Y K+ +
Sbjct: 435 LLTDLEQKEFQVTLDKDYPKPMVTHKQARLRAIEVYEQSKDTV 477
>gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
Length = 469
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 222/387 (57%), Gaps = 30/387 (7%)
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS-NKCYL 143
RD I + ++ G S++D + + E+ + G Y F+ Y KKWI+ K + +
Sbjct: 105 RDLYITELVEQKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKHA 164
Query: 144 QSYPVKSYLNNLVH----SSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLN 199
+ ++ N+ H + L ++I N K++ S++ G A L
Sbjct: 165 LDFEKAAHFNDAPHFKAGTMLLAELIKNR----------KTDFSTI---VGEDYAHKQLQ 211
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F+ K++ Y +R+ PSI GTS LS L FG ISIRK+ + G T
Sbjct: 212 AFVQKRLAAYEKDRDIPSIKGTSRLSPFLSFGQISIRKVWAACQEM------PSSTGKAT 265
Query: 259 WLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN-WCKGYTGYPLID 317
+L +L WRDFY MI + +P N ++Y N+ W+ D A LN W G TGYP+ID
Sbjct: 266 FLKELAWRDFYHMIYFTHPEQKNYELIEKYRNMDWQKDEEA----LNKWQAGQTGYPIID 321
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+ GE YFA +L D+D ASN G WQW+AS
Sbjct: 322 AAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAAS 381
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G + P+FRIFNPI Q KKFD G FI++++P+L++L K++H P+ ++ + I+
Sbjct: 382 TGTDAVPYFRIFNPITQGKKFDKDGTFIKQFVPELAQLPLKFVHEPYLMTNQEQADLQIV 441
Query: 438 LGKNYPKPILEHSLSKKNILKRYNFIK 464
LG +YP PI++H+ ++K L Y+ I+
Sbjct: 442 LGTDYPLPIVDHNEARKRALDLYSKIE 468
>gi|407477681|ref|YP_006791558.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium antarcticum B7]
gi|407061760|gb|AFS70950.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium antarcticum B7]
Length = 451
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/438 (34%), Positives = 237/438 (54%), Gaps = 38/438 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDY-EPQAI 83
D R ++ F+++ + + +++ + IR+ I E L D ++ N +Y EP
Sbjct: 49 DARQQYFFQALEQFAKTCKSHR--MPIRF-IEGDENDFLEATAMADLLLFNAEYVEPFKT 105
Query: 84 IRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYL 143
D +IKK G K D+ + + + G Y +F+ Y+ +++K
Sbjct: 106 RDDNIIKKRG---GKKTERLLDRHLLHPHAVKKNDGSYYKVFTPYKNAFLKK-------- 154
Query: 144 QSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK 203
PV +N + NN + + K S + K G AK L+ F++
Sbjct: 155 -ELPVPYSVNLTCLQERYQTRRQNNTFMVE---YFKQAGSDVAFKPGEEQAKKRLDQFLQ 210
Query: 204 -KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
+ +Y R+ PSI+GTS +S +LR G I IR + + + + K D G T++++
Sbjct: 211 TSLASYEEQRDVPSIDGTSLMSRYLRTGEIGIRTIFEAVSQ------KEDSKGKQTYITE 264
Query: 263 LIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
LIWR+FY IL YP ++Y NI WE D +K F WC+G TGYP++D+A+ Q
Sbjct: 265 LIWREFYYTILLHYPEAKRLPVNEQYTNIEWEED---EKGFQAWCEGKTGYPIVDAAMRQ 321
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
LN++G+MHNRLRM+ ASFL K++ I+W+ GE YF KL D++ ASN G WQW+AS G +
Sbjct: 322 LNTTGWMHNRLRMIVASFLTKDLLIDWQKGERYFQQKLVDYEAASNIGGWQWAASVGTDA 381
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNY 442
P+FR+FNP QSKKFD G FIR+Y+P++ +LSNKYIH P + + A Y
Sbjct: 382 VPYFRVFNPTTQSKKFDKDGTFIRQYVPEIKELSNKYIHEP--TDQQRQDHA-------Y 432
Query: 443 PKPILEHSLSKKNILKRY 460
PI++H +++K + R+
Sbjct: 433 LMPIVDHDMARKRAIARF 450
>gi|434402615|ref|YP_007145500.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
gi|428256870|gb|AFZ22820.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
Length = 480
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/454 (33%), Positives = 236/454 (51%), Gaps = 31/454 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D +IL+ + I R+ ++ + L S L+I + I
Sbjct: 31 VVGVFCLDPDILE----RDDIAPARVTYMLGCLQALQERYIQAGSQLLILHGPPVVVIAD 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L L AV N D EP + RD+ I L G +F + DQ++ EI + P
Sbjct: 87 LAEALKAKAVFWNWDVEPYSQKRDRTIINSLTEKGIQFLNQNWDQILHSPEEIFSGAKTP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNN---LVHSSKLHKIINN-NIISLNDLGF 177
Y++++ + K W K K+ PV++ N ++ K+ + S DLGF
Sbjct: 147 YTVYTPFWKNWSSKPKAK-------PVETLENAEGLTADEQEIAKLAGAIELPSAKDLGF 199
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
L I G + A+ L F I Y RN+P+++GTS LS L+FG I IR
Sbjct: 200 VWEG--ELVISPGEAAAQARLEAFTNNAITEYQEQRNFPAVDGTSQLSAALKFGVIGIRT 257
Query: 237 LVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + ++ + TW +L WR+FYQ +Y +P + ++++ + N WE+
Sbjct: 258 VWQATIEALENSRSGETEASIRTWQQELAWREFYQHAMYHFPELAEGAYRETFKNFPWEN 317
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ +++F WC+G TG+P++D+A+ QLN G+MHNR RM+ ASFL K++ IN +WGE Y
Sbjct: 318 N---QEHFQAWCEGRTGFPIVDAAMRQLNEIGWMHNRCRMIVASFLTKDLQINPQWGEKY 374
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F KL D DL++NNG WQWSASSG +P RIFNP Q++KFD G +IR+++ +L +
Sbjct: 375 FMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPDGEYIRQWVSELRSV 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
+Y+ + K +L G YPKPI++H
Sbjct: 434 DTQYLVTG-KIPPLELHAVG------YPKPIVDH 460
>gi|192360182|ref|YP_001982413.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
gi|190686347|gb|ACE84025.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
Length = 476
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 245/458 (53%), Gaps = 41/458 (8%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLII----RYAIASKEIKKLVIKLNIDAVMINHDY 78
I R++FI + ++ L L + L + R + + LV + NID N +Y
Sbjct: 45 IAPARLDFIRRHLLVLVRELAQLNIPLRLIAVNRAEQIAPALAALVTQYNIDKCFFNAEY 104
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
+ RD + + L+ G D+VI I G+PY +F+ +++KW++ V
Sbjct: 105 PLDELARDHQVNQLLRAQGVLVKRCHDRVIVPPGMIRTGNGEPYKVFTAFKRKWLQTVMP 164
Query: 139 --------NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTG 190
Q PVK V + ++++ + S+ DL G
Sbjct: 165 LHLQPLGLPDKQAQPMPVKP-----VTQADINRLFGEH--SVRDLEHL--------WPAG 209
Query: 191 ASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHY 249
A L++FI+ + +Y R++P++ GTS LS +L G++S R+ + + + + +
Sbjct: 210 EDEACARLDSFIESGLTHYQDKRDFPALQGTSTLSPYLAIGSLSPRQAISSVLCYTQGDW 269
Query: 250 KTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCK 308
+++ G W+S+LIWR+FYQ ++ +P V +++ + + W+ D KK F WC+
Sbjct: 270 ESNA-GASCWISELIWREFYQHVVVDFPQVCKHRAMQVHTEAFPWKKD---KKQFSRWCQ 325
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG PL+D+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D D A+N
Sbjct: 326 GNTGIPLVDAAMRQLVMTGWMHNRLRMVVAMFLTKNLQIDWRLGERFFMEHLIDGDFAAN 385
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASS 428
NG WQWSAS+G + P+FR+FNPI QS++FD QG FIR ++P+L+ + KYIH+P S
Sbjct: 386 NGGWQWSASTGTDAAPYFRVFNPISQSERFDPQGDFIRSWIPELADVPLKYIHNPSADKS 445
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ YP P+++ + S+K+ + ++ + ++
Sbjct: 446 FS--------SLQYPAPMVDLAESRKSTIALFSQLPSL 475
>gi|384084820|ref|ZP_09995995.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 484
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/457 (32%), Positives = 254/457 (55%), Gaps = 21/457 (4%)
Query: 13 ILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAV 72
ILD G E + + S+ +L +L Y LI+R + +++++ + + AV
Sbjct: 34 ILDADEQAGTAE---LWWRHHSLQQLQESLARYGLPLILRRGKPLQILQEIIAETSARAV 90
Query: 73 MINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKW 132
N Y+P I +D IK EL+ G S+ + E + + KPY +F+ + K
Sbjct: 91 FWNRRYDPAGIAQDTAIKAELRSQGIAVRSFTGDCLVEP-WLHHHDEKPYKVFTPFWKSL 149
Query: 133 IEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS---SLGIKT 189
+ + + + P + + L H +L + + ++ L K N + S
Sbjct: 150 LARF----SIVPALPEPDF-SALPH--QLTQDLVTETLAEWHLLPQKPNWAKRFSEFWAP 202
Query: 190 GASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G +GAK L F+ + + NY+ RN+P+ N S LS HL G IS R++ + +++H
Sbjct: 203 GETGAKNRLQQFLDESLVNYSEGRNFPAQNSVSRLSPHLSHGEISPRQIWQETRFHLRQH 262
Query: 249 YK-TDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ TD +F L +L WR+F +L+ +P + + + E+ + W+ D + W
Sbjct: 263 PELTDEGEHF--LRELGWREFSWHLLFHFPQLPDTPLRPEFADFPWQKDTLLLER---WQ 317
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
G TGYP++D+ + +L SG+MHNR+RM+ ASFLIK++ ++W+ GE +F + L D DLA+
Sbjct: 318 SGQTGYPIVDAGMRELWQSGWMHNRVRMICASFLIKDLLVSWQDGEAWFWDTLVDADLAN 377
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N+ +WQW A SG + P+FRIFNP++Q +KFD +G ++R+++P+LS L +++IH PW A
Sbjct: 378 NSASWQWVAGSGADAAPYFRIFNPVLQGEKFDPEGKYLRRWIPELSALPDRFIHQPWAAD 437
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
L+KAG++LG NYPK +++H +++ L + +K
Sbjct: 438 QDLLKKAGVVLGGNYPKRLIDHHEARQQALDIFEKLK 474
>gi|385330456|ref|YP_005884407.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
gi|311693606|gb|ADP96479.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
Length = 467
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 219/400 (54%), Gaps = 28/400 (7%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSF 127
+ A+ N +Y RDK +K +G Y+DQ + EIL + PYS+F+
Sbjct: 94 GVTALHFNEEYGVNERKRDKALKHRFDQLGIAVRKYRDQTVAPVGEILTQQNDPYSVFTP 153
Query: 128 YQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI 187
+ ++W ++ L +P N V ++ I + L +
Sbjct: 154 FSRRWRSWIEETHPGL--FPTPKARGNAVSPEQIDAIPEAFRDAPEPL-----------V 200
Query: 188 KTGASGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
TG A L F++K Y R++P+I+GTS +S +L G +S R+ LI
Sbjct: 201 ATGEDAAHDQLERFLEKRGGAYKEKRDFPAIDGTSQISPYLANGVLSGRQC--LIAGRQA 258
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLN 305
+ + G TW++++ WRDFY ILY +P V ++++FK E + + W N F
Sbjct: 259 QGAGGNQEGLGTWITEIAWRDFYINILYHFPRVSMHRAFKPETETLEW---NNPGDRFEA 315
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W G TG P++D+A+ QLN +G+MHNRLRM+TA +L KN+ I+W+ GE YF +KL D L
Sbjct: 316 WKTGNTGVPIVDAAMRQLNQTGWMHNRLRMITAMYLTKNLFIDWRLGEAYFMSKLIDGFL 375
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
ASNNG WQWSAS+G + P+FR+FNP+ QS++FD G FIR+++P+L+KL +K IH P
Sbjct: 376 ASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPDGDFIREWVPELAKLDSKRIHDPGA 435
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
K G+I K YP+ I++ S+K + ++ +KN
Sbjct: 436 -------KGGVIP-KGYPRQIVDLKESRKEAIAKFQELKN 467
>gi|1827916|pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
gi|1827917|pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
Length = 471
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 46 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 105
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 106 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 163
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 164 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 211
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 212 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 269
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 270 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 326
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 327 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 386
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 387 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 442
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 443 TL--DYPQPIVEHKEARVQTLAAYEAAR 468
>gi|218893757|ref|YP_002442626.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
gi|218773985|emb|CAW29800.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
Length = 481
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L + AV +N +Y
Sbjct: 52 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNE 111
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 112 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 162
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 163 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 221
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 222 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 281
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 282 NELLWREFYKHILVGYPRVSRHRPFREETEALCWRQ---APAELEAWQQGRTGIPIIDAA 338
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 339 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 398
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 399 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 450
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 451 VDYPRPMVDLKASRERALAAF---RNLPPRD 478
>gi|432626253|ref|ZP_19862235.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE77]
gi|431164965|gb|ELE65345.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE77]
Length = 472
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLTTGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 TL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|417945000|ref|ZP_12588237.1| deoxyribodipyrimidine photolyase [Escherichia coli XH140A]
gi|342363174|gb|EGU27284.1| deoxyribodipyrimidine photolyase [Escherichia coli XH140A]
Length = 472
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 TL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|448622754|ref|ZP_21669403.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
gi|445753262|gb|EMA04679.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
Length = 484
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 136/479 (28%), Positives = 244/479 (50%), Gaps = 39/479 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD+++LD + R+ ++ ++ EL ++ SDL++ +
Sbjct: 27 VAPLFVFDRDVLDHAGAP------RVRYLLDALAELREAYRDRGSDLLVARGDPRTVVPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L+ + + DY A RD ++ L G S D + I G Y
Sbjct: 81 VAAALDAERAVWGIDYSGLARERDADVRLALDDAGVARESVHDAIFHPPGSITTNAGDTY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN-------------NI 169
S+++++ KKW ++ K + YP + ++L + L + ++
Sbjct: 141 SVYTYFWKKWRDRDKP-----EPYP-EPTADDLADAGTLETAAESLSDGDAEFDVAVGDL 194
Query: 170 ISLNDLGFCKSNLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLR 228
+++DLGF + + G A+ L+ F I Y +R+YP+ + TS LS L+
Sbjct: 195 PTISDLGFEEPTAAVQ--SAGTEAARERLSAFCADAIYRYADDRDYPTRDATSRLSTDLK 252
Query: 229 FGTISIRKLVKLIFKFIKK--HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKK 286
FGTI IR++ + + + + F SQL WR+FY +L +P+VV +++K+
Sbjct: 253 FGTIGIREVYAATAAAREGVGGERDESVEEFQ--SQLAWREFYAHVLREHPSVVTENYKE 310
Query: 287 EYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMG 346
++I W D + W +G TGYP++D+ + QL YMHNR+RM+ ASFL K++
Sbjct: 311 YEEDIAWRDD---AEELAAWKEGKTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLL 367
Query: 347 INWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIR 406
+W+ G +F L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D G +I+
Sbjct: 368 CDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIK 427
Query: 407 KYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+Y+P+LS ++ IH + + E+ L +YP+PI++HS ++ + + +
Sbjct: 428 RYVPELSDVTANTIHEWHDLTDLERER----LAPDYPEPIVDHSERRERAISMFEAARG 482
>gi|448578594|ref|ZP_21644014.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
gi|445725772|gb|ELZ77392.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
Length = 478
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/467 (29%), Positives = 245/467 (52%), Gaps = 21/467 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD +L+ S R+ ++ ++ EL + ++ SDL++ +
Sbjct: 27 VAPLFVFDDAVLEHAGSP------RVRYMLDALAELRASYRSRGSDLLVARGDPRSLVPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L+ D V+ N DY A RD ++ L G + D +IF I G PY
Sbjct: 81 VADALDSDRVVWNVDYSGLAKERDSDVRLALDEAGTDRETVHDAIIFPPGSITTNAGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHS-SKLHKIINNNIISLNDLGFCKSN 181
S+++++ KKW ++ K + + L + S + + ++ +L+DLGF +
Sbjct: 141 SVYTYFWKKWRDRDKPDPFPDPDATDLADAETLESAVSSVENVTVGSLPTLSDLGFDAPD 200
Query: 182 LSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
I G A+ L +F + I Y +R++P+ GTS LS L+FGTI +R+++
Sbjct: 201 ADV--ISAGTEAARARLADFCEDDIYRYADDRDFPARGGTSRLSTDLKFGTIGVREVLAK 258
Query: 241 IFKFIKK--HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ + + + F SQL WR+FY +L+ P+VV++++K+ +I W D
Sbjct: 259 TAAAREGVGGDRDESVEEFQ--SQLAWREFYTHVLWFNPSVVSENYKEYEHDIQWRDD-- 314
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ W G+TGYP++D+ + QL YMHNR+RM+ ASFL K++ +W+ G +F
Sbjct: 315 -PEELTAWKSGHTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCDWRHGYAHFRE 373
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L+D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D +I++Y+P+L + S
Sbjct: 374 YLSDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKQYVPELREASAN 433
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH + S + + + +YP PI++H+ ++ L + +
Sbjct: 434 AIHEWHELSETERNR----VAPDYPAPIVDHAERREMALSMFETARG 476
>gi|374585921|ref|ZP_09659013.1| DNA photolyase FAD-binding [Leptonema illini DSM 21528]
gi|373874782|gb|EHQ06776.1| DNA photolyase FAD-binding [Leptonema illini DSM 21528]
Length = 493
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 153/501 (30%), Positives = 247/501 (49%), Gaps = 86/501 (17%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
++ VF FD +IL+PL DRR+ FI ++ N+ + LI Y + +
Sbjct: 38 DLLAVFCFDPHILEPLPRS----DRRVGFIVDALR----NVADTGLPLISFYGPPVEIFE 89
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L L++ V N DYEP A RD ++ L G F + D VIF +IL G P
Sbjct: 90 GLSQHLSVAGVYANEDYEPYARARDAQVRTGLDRRGIPFHLFTDHVIFHPEQILKNDGLP 149
Query: 122 YSIFSFYQKKWIEKV-----------------------KSNKCYLQSYPVKSYLNNLVHS 158
Y +F+ Y ++W ++ ++ + + ++ + +
Sbjct: 150 YHVFTPYSRRWKDRFFQSVIRPLDAPDFAQMPSAELNDRAGDPWQDLFEMRRRIADRAGR 209
Query: 159 S-------KLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKI-KNYNI 210
S +++ +GF + L +KT AS K + +I + Y
Sbjct: 210 SITTSNNESAQTTSEERLLTAAQIGF-QPEPHGLALKTPAS--KTPASRIPGRIIERYAE 266
Query: 211 NRNYPSI-NGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFY 269
+R+ P++ +GT+ L HLRFGT+SIR+L +H+ +L++LIWR+F+
Sbjct: 267 SRDLPALADGTTRLGPHLRFGTVSIRRLAN-----AARHHPV-------FLNELIWREFF 314
Query: 270 QMILYCYPNVVNKSFKKEYDNI--LWESDNY---AKKNFLNWCKGYTGYPLIDSAIIQLN 324
QMILY Y +++ F+ E+ + W A+++F W G TGYPL+D+ + +L
Sbjct: 315 QMILYYY-QGIDQEFRPEFRILRKFWRDPARSADARRDFEAWKGGRTGYPLVDAGMRELA 373
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
+G+MHNR+RMV ASFL K++ I+W+ GE YFA +L DF+LASNNGNWQW+A +GC + P
Sbjct: 374 VTGFMHNRVRMVVASFLCKHLLIDWRIGERYFAEQLLDFELASNNGNWQWAAGTGCDAAP 433
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNP +Q ++FD Q ++R++LP+ YP
Sbjct: 434 YFRIFNPELQQRRFDPQMQYVRRWLPEFGT-------------------------DRYPP 468
Query: 445 PILEHSLSKKNILKRYNFIKN 465
PI+ H ++ L Y ++
Sbjct: 469 PIVNHKAARARALAFYERVRT 489
>gi|16128683|ref|NP_415236.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K-12 substr. MG1655]
gi|157160187|ref|YP_001457505.1| deoxyribodipyrimidine photolyase [Escherichia coli HS]
gi|170080375|ref|YP_001729695.1| deoxyribodipyrimidine photolyase [Escherichia coli str. K-12
substr. DH10B]
gi|188495323|ref|ZP_03002593.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638]
gi|238899973|ref|YP_002925769.1| deoxyribodipyrimidine photolyase [Escherichia coli BW2952]
gi|300947213|ref|ZP_07161423.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1]
gi|301027120|ref|ZP_07190490.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1]
gi|331641209|ref|ZP_08342344.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H736]
gi|386279721|ref|ZP_10057398.1| deoxyribodipyrimidine photo-lyase [Escherichia sp. 4_1_40B]
gi|386596450|ref|YP_006092850.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DH1]
gi|386612874|ref|YP_006132540.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNK88]
gi|386703878|ref|YP_006167725.1| deoxyribodipyrimidine photo-lyase [Escherichia coli P12b]
gi|387611194|ref|YP_006114310.1| deoxyribodipyrimidine photolyase [Escherichia coli ETEC H10407]
gi|387620441|ref|YP_006128068.1| deoxyribodipyrimidine photolyase [Escherichia coli DH1]
gi|388476800|ref|YP_488988.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K-12 substr. W3110]
gi|404374035|ref|ZP_10979256.1| deoxyribodipyrimidine photo-lyase [Escherichia sp. 1_1_43]
gi|415779760|ref|ZP_11490368.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3431]
gi|417263831|ref|ZP_12051227.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2.3916]
gi|417289733|ref|ZP_12077016.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B41]
gi|417611744|ref|ZP_12262216.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_EH250]
gi|417617145|ref|ZP_12267575.1| deoxyribodipyrimidine photo-lyase [Escherichia coli G58-1]
gi|417633312|ref|ZP_12283531.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_S1191]
gi|417978300|ref|ZP_12619070.1| deoxyribodipyrimidine photolyase [Escherichia coli XH001]
gi|418301560|ref|ZP_12913354.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNF18]
gi|418959002|ref|ZP_13510908.1| FAD binding domain of DNA photolyase [Escherichia coli J53]
gi|419141228|ref|ZP_13685982.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6A]
gi|419147934|ref|ZP_13692616.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC6B]
gi|419152587|ref|ZP_13697171.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6C]
gi|419158032|ref|ZP_13702550.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6D]
gi|419162948|ref|ZP_13707425.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC6E]
gi|419174310|ref|ZP_13718163.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7B]
gi|419813054|ref|ZP_14337911.1| deoxyribodipyrimidine photolyase [Escherichia coli O32:H37 str. P4]
gi|419941134|ref|ZP_14457838.1| deoxyribodipyrimidine photolyase [Escherichia coli 75]
gi|421777685|ref|ZP_16214278.1| FAD binding domain of DNA photolyase [Escherichia coli AD30]
gi|422765233|ref|ZP_16818960.1| DNA photolyase [Escherichia coli E1520]
gi|422769902|ref|ZP_16823593.1| DNA photolyase [Escherichia coli E482]
gi|422816682|ref|ZP_16864897.1| deoxyribodipyrimidine photo-lyase [Escherichia coli M919]
gi|423701454|ref|ZP_17675913.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H730]
gi|432368655|ref|ZP_19611757.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE10]
gi|432415634|ref|ZP_19658260.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE44]
gi|432484405|ref|ZP_19726326.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE212]
gi|432562581|ref|ZP_19799205.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE51]
gi|432579359|ref|ZP_19815791.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE56]
gi|432635985|ref|ZP_19871868.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE81]
gi|432669615|ref|ZP_19905157.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE119]
gi|432684517|ref|ZP_19919830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE156]
gi|432690605|ref|ZP_19925845.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE161]
gi|432703246|ref|ZP_19938368.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE171]
gi|432736214|ref|ZP_19970985.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE42]
gi|432953923|ref|ZP_20146099.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE197]
gi|433046837|ref|ZP_20234252.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE120]
gi|433172540|ref|ZP_20357095.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE232]
gi|442592298|ref|ZP_21010276.1| Deoxyribodipyrimidine photolyase [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|450240361|ref|ZP_21899301.1| deoxyribodipyrimidine photolyase [Escherichia coli S17]
gi|130152|sp|P00914.1|PHR_ECOLI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|147268|gb|AAA24388.1| deoxyribopyrimidine photolyase [Escherichia coli]
gi|1651311|dbj|BAA35367.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K12 substr. W3110]
gi|1786926|gb|AAC73802.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K-12 substr. MG1655]
gi|6006450|emb|CAB56782.1| DNA photolyase [Escherichia coli str. K-12 substr. W3110]
gi|157065867|gb|ABV05122.1| deoxyribodipyrimidine photolyase [Escherichia coli HS]
gi|169888210|gb|ACB01917.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K-12 substr. DH10B]
gi|188490522|gb|EDU65625.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638]
gi|238860746|gb|ACR62744.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
BW2952]
gi|260450139|gb|ACX40561.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli DH1]
gi|299879409|gb|EFI87620.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1]
gi|300453199|gb|EFK16819.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1]
gi|309700930|emb|CBJ00227.1| deoxyribodipyrimidine photolyase [Escherichia coli ETEC H10407]
gi|315135364|dbj|BAJ42523.1| deoxyribodipyrimidine photolyase [Escherichia coli DH1]
gi|315614653|gb|EFU95294.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3431]
gi|323938286|gb|EGB34543.1| DNA photolyase [Escherichia coli E1520]
gi|323942969|gb|EGB39132.1| DNA photolyase [Escherichia coli E482]
gi|331038007|gb|EGI10227.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H736]
gi|332342043|gb|AEE55377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNK88]
gi|339413658|gb|AEJ55330.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNF18]
gi|344192086|gb|EGV46186.1| deoxyribodipyrimidine photolyase [Escherichia coli XH001]
gi|345365093|gb|EGW97202.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_EH250]
gi|345380317|gb|EGX12216.1| deoxyribodipyrimidine photo-lyase [Escherichia coli G58-1]
gi|345390026|gb|EGX19825.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_S1191]
gi|359331407|dbj|BAL37854.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K-12 substr. MDS42]
gi|377998038|gb|EHV61135.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC6B]
gi|377998843|gb|EHV61930.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6A]
gi|378002822|gb|EHV65871.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6C]
gi|378012496|gb|EHV75425.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6D]
gi|378016090|gb|EHV78978.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC6E]
gi|378037167|gb|EHV99702.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7B]
gi|383102046|gb|AFG39555.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli P12b]
gi|384378258|gb|EIE36143.1| FAD binding domain of DNA photolyase [Escherichia coli J53]
gi|385154056|gb|EIF16075.1| deoxyribodipyrimidine photolyase [Escherichia coli O32:H37 str. P4]
gi|385539770|gb|EIF86600.1| deoxyribodipyrimidine photo-lyase [Escherichia coli M919]
gi|385712409|gb|EIG49361.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H730]
gi|386123138|gb|EIG71738.1| deoxyribodipyrimidine photo-lyase [Escherichia sp. 4_1_40B]
gi|386222388|gb|EII44815.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2.3916]
gi|386255771|gb|EIJ05459.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B41]
gi|388401489|gb|EIL62132.1| deoxyribodipyrimidine photolyase [Escherichia coli 75]
gi|404292392|gb|EJZ49216.1| deoxyribodipyrimidine photo-lyase [Escherichia sp. 1_1_43]
gi|408457311|gb|EKJ81109.1| FAD binding domain of DNA photolyase [Escherichia coli AD30]
gi|430888371|gb|ELC11090.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE10]
gi|430943211|gb|ELC63336.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE44]
gi|431017951|gb|ELD31402.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE212]
gi|431098727|gb|ELE04039.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE51]
gi|431108027|gb|ELE12189.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE56]
gi|431173356|gb|ELE73435.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE81]
gi|431213145|gb|ELF11062.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE119]
gi|431224426|gb|ELF21651.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE156]
gi|431229344|gb|ELF25994.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE161]
gi|431246573|gb|ELF40832.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE171]
gi|431285754|gb|ELF76589.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE42]
gi|431469865|gb|ELH49791.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE197]
gi|431571310|gb|ELI44199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE120]
gi|431695760|gb|ELJ61054.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE232]
gi|441607957|emb|CCP95723.1| Deoxyribodipyrimidine photolyase [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|449324524|gb|EMD14453.1| deoxyribodipyrimidine photolyase [Escherichia coli S17]
Length = 472
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 TL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|90020376|ref|YP_526203.1| deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
2-40]
gi|89949976|gb|ABD79991.1| Deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
2-40]
Length = 483
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/471 (32%), Positives = 253/471 (53%), Gaps = 26/471 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV +I K+ +P QG ++ S+ + +++N L + + +
Sbjct: 31 EVLPAYI--KDTANPWPIQGAA----AWWLHHSLAAFTNSIKNKGGVLSLFEGDPATLVP 84
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKV--IGCKFFSYKDQVIFEKNEILNKTG 119
+L+ + IDAV ++ +EP + I K K I CK F+ ++ + LNK G
Sbjct: 85 ELISQNKIDAVYLSQGFEPYEVQLQANIHKWCKQHNIECKRFA--GHLLLNPDTHLNKQG 142
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
KP+ +F+ Y K + ++ P+ S L + + KL K + N + L
Sbjct: 143 KPFQVFTPYYKA----ALATHTIPRAKPIPSNLAKVWAAKKLPKSVALNKLKLLPNLNWA 198
Query: 180 SNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+S + G GA L I+ KI +Y +R++P+++GTS LS HLRFG IS R+
Sbjct: 199 DQFNSQ-WQPGEEGAHKNLREAIEDKIASYTRDRDFPAVDGTSLLSAHLRFGEISPRQ-- 255
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE--SD 296
I++ + + F L QL+WRDF +L+ +P++ ++FK++++ W+ S+
Sbjct: 256 --IWQQVATQMDGEQCAPF--LRQLMWRDFSYALLHHWPHIPQQAFKQQFEKFPWQKASN 311
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
K W G TGYP++D+ + QL +G+MHNR+RM+ ASFL K++ I+W G +F
Sbjct: 312 KNVAKQLHAWQTGTTGYPIVDAGMRQLWQTGWMHNRVRMIVASFLTKHLRIHWHEGAKWF 371
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
+ L D DLA+N WQW A G + P+FRIFNP++Q +KFD QG +I+ ++P+L+ L
Sbjct: 372 WDTLVDADLANNTAGWQWVAGCGADAAPYFRIFNPVLQGEKFDKQGEYIKTWVPELAALP 431
Query: 417 NKYIHSPWKASSYKLEKAGIILGKN--YPKPILEHSLSKKNILKRYNFIKN 465
K+IH+PW A L+ AGI LG N YP PI++H +++ L Y +K
Sbjct: 432 AKFIHAPWLAPQDILQTAGISLGNNSTYPLPIVDHKYAREAALAAYQQLKG 482
>gi|421170445|ref|ZP_15628397.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
700888]
gi|404523383|gb|EKA33807.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
700888]
Length = 481
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L I AV +N +Y
Sbjct: 52 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNE 111
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 112 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 162
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 163 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 221
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 222 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 281
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 282 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 338
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 339 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 398
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 399 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 450
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 451 VDYPRPMVDLKASRERALAAF---RNLPPRD 478
>gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
Length = 484
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 225/452 (49%), Gaps = 56/452 (12%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAII 84
D+ +E I K + + I +L+I + +L+ KL + + N Y P
Sbjct: 71 DQSLEAIRKQLADRGI-------ELLIETGDPRDILPQLIAKLAVTELFWNRRYAPAERE 123
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK-------------- 130
D +K +LK G S+ ++ E E+ + PY +F+ + K
Sbjct: 124 FDANLKAQLKESGTGVTSFPGNLLLEPWELKTASDTPYQVFTPFAKALRHHHIPRPLSRR 183
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTG 190
+W K CY + P + K + N G
Sbjct: 184 QWDIKPTQETCYSPNVPA--------WAKKFDGLWN----------------------IG 213
Query: 191 ASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHY 249
A+ L F++ + Y +R+ P I+GTS LS HLRFG IS R+ F+ +H+
Sbjct: 214 EDAARDCLTRFLENTLSTYTEDRDVPGIDGTSRLSPHLRFGEISARQAWYATLAFMDEHH 273
Query: 250 KTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKG 309
G +LS+LIWRDF LY ++ + I W D A F W +G
Sbjct: 274 SARAGGE-KFLSELIWRDFNYHQLYHRRDISRHDMRDTLSGIAWRDDRAA---FEAWRRG 329
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TG+P+ID+ + QL ++G+MHNR+RM+ ASFL KN+ I+W+ GE +F + L D D+ASN
Sbjct: 330 QTGFPIIDAGMRQLWATGWMHNRVRMLVASFLTKNLLIDWRKGEEWFWDTLVDGDIASNP 389
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSY 429
G+WQW A G + P+FR+FNPI+Q +KFD +G ++R ++P+LS LSNK++H P++A
Sbjct: 390 GSWQWVAGCGMDAAPYFRVFNPILQGEKFDAEGQYVRHWVPELSGLSNKWLHKPFEAPKD 449
Query: 430 KLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
L AGI LG YPKPI++ S++ KR N
Sbjct: 450 VLTSAGIALGSTYPKPIIDLQASQREARKRLN 481
>gi|296391481|ref|ZP_06880956.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAb1]
gi|416874241|ref|ZP_11918010.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 152504]
gi|334843645|gb|EGM22231.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 152504]
Length = 481
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L I AV +N +Y
Sbjct: 52 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNE 111
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 112 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 162
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 163 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 221
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 222 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 281
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 282 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 338
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 339 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 398
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 399 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 450
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 451 VDYPRPMVDLKASRERALAAF---RNLPPRD 478
>gi|392986329|ref|YP_006484916.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa DK2]
gi|419754592|ref|ZP_14280952.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
PADK2_CF510]
gi|384399005|gb|EIE45408.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
PADK2_CF510]
gi|392321834|gb|AFM67214.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa DK2]
Length = 476
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L + AV +N +Y
Sbjct: 47 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 107 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 158 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 216
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 217 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 334 MSQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 394 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 445
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 446 VDYPRPMVDLKASRERALAAF---RNLPPRD 473
>gi|354595470|ref|ZP_09013495.1| deoxyribodipyrimidine photolyase [Commensalibacter intestini A911]
gi|353671171|gb|EHD12885.1| deoxyribodipyrimidine photolyase [Commensalibacter intestini A911]
Length = 472
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 151/451 (33%), Positives = 254/451 (56%), Gaps = 34/451 (7%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ ++ F++ S+IEL +L + + L I+ + I+K + I+++ N Y
Sbjct: 48 MSSKQAHFVYDSLIELQKSLTSLNVSLHIKQCPDFNKTVDVIEKFCQEQQINSLFYNRQY 107
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD LIK++L+ + + + + N G+ Y +F+ +++ ++++
Sbjct: 108 EYNERKRDWLIKQKLQP-SVEIYELDGNLFLTPLTVRNGQGEMYKVFTPFRQAFLDRFLQ 166
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ L P +S++H+ I S+ + + + G A L
Sbjct: 167 SNHKLYKTP----------TSRIHQ--QATISSIPNFNYPMQPYDFF--QAGEDKALTHL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
+F + ++ NY R+ PSI+ TS +S +L G +S+R+ + K + + G F
Sbjct: 213 EHFCEERVINYADKRDIPSIDYTSQISAYLTLGVLSVRQCFYFLNKEHPEFWLYRESGAF 272
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
W ++L+WR+FYQ ++ + + +K F + DNI W++D+Y F W KG TGYP++
Sbjct: 273 CWFNELVWREFYQHLMVAHSRLCRHKPFIEWTDNIQWKNDSY---QFEQWKKGNTGYPIV 329
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLN +G+MHNRLRM+TASFL+K++ I+W+WGE YF ++L D DLA+NNG WQW+A
Sbjct: 330 DAAMRQLNQTGWMHNRLRMITASFLVKDLLIDWRWGEQYFMSQLTDGDLAANNGGWQWAA 389
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP--WKASSYKLEKA 434
S+G S P+FRIFNP Q K+FD G FIR++LP+L+++ K IH+P W EK
Sbjct: 390 STGTDSVPYFRIFNPTTQGKRFDPNGNFIRQWLPELAQVPEKLIHTPHLWA------EKM 443
Query: 435 GIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
G I+ NYP+PI+ H +++K L+ + KN
Sbjct: 444 GKII--NYPQPIVTHDIARKETLEAFVNAKN 472
>gi|381168517|ref|ZP_09877711.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
gi|380682377|emb|CCG42529.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
Length = 482
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 134/441 (30%), Positives = 232/441 (52%), Gaps = 40/441 (9%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S++ L +L L++R ++ LV V+ N Y P+ +++D I
Sbjct: 54 WLHHSLLSLGRDLAARGVPLLLRRGEPLAVLEALVAATGATRVLWNRRYTPRGVVQDTTI 113
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYL------ 143
K L G + S+K ++FE EI ++G P+ +F+ + + + ++
Sbjct: 114 KAALTRHGIEVRSFKAGLLFEPWEIATRSGTPFRVFTPFWRSCLAAPPPDRPLPPPAALR 173
Query: 144 --QSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+S P L S +L + LN + G +GA+ L F
Sbjct: 174 PCESVPPGDDLG----SWRLLPTAPDWAGGLN-----------ADWQPGEAGAEARLQIF 218
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF--- 257
+ +++K Y + R+ P GTS LS HL FG IS R+ H D G
Sbjct: 219 LDQRLKAYAVARDLPGQAGTSRLSPHLAFGEISPRRAF---------HAARDAAGSGNGL 269
Query: 258 -TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
+L++L WR+F +L+ P++ + + E+ W D + + W +G TG+PL+
Sbjct: 270 DRFLAELGWREFCAHLLFTVPDLPEQPLRGEFAAFPWRDD---PELLVAWQRGRTGFPLV 326
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+ + +L ++G+MHNR+RMV ASFL+K++ ++W+ G ++F + L D DLASN +WQW A
Sbjct: 327 DAGMRELWTTGWMHNRVRMVVASFLVKDLLLSWRLGADWFRDTLVDADLASNVASWQWVA 386
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
G + PFFRIFNP +Q +KFD G ++R++ P+L+ L ++++H P +AS L +AG+
Sbjct: 387 GCGADAAPFFRIFNPTLQGEKFDPDGRYVRRWCPELAGLPDRWLHQPGRASDIILRQAGV 446
Query: 437 ILGKNYPKPILEHSLSKKNIL 457
LG++YP PI++H ++++ L
Sbjct: 447 SLGRSYPHPIVDHDVARRRAL 467
>gi|257388583|ref|YP_003178356.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
12286]
gi|257170890|gb|ACV48649.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
12286]
Length = 466
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/467 (30%), Positives = 228/467 (48%), Gaps = 33/467 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD +LD R+ F+ ++ L ++ SDL+I + + EI +
Sbjct: 27 VVPVFVFDDAVLDHAAPP------RVAFMLDALDSLRAQYRDRGSDLVIAHGDPTAEIPR 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L D V Y I RD +++ L +G + + D V EI G PY
Sbjct: 81 LAEAFGADGVTWGEAYSGLGIERDIAVRQALDDVGVEREAVTDSVHHRPGEITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+F+++ +KW ++ K + Y P +L + + + S+ DLGF +
Sbjct: 141 SVFTYFGRKWHDREKEDP-YDAPGP-----------DELADVSGDPLPSVGDLGFEEPQA 188
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKL---V 238
G A+ LL+ F + I Y R+YP+ + TS LS HL+FGTI IR++
Sbjct: 189 EI--PPAGTEPARELLDAFCEDDIYRYEDRRDYPADDCTSRLSAHLKFGTIGIREVYERT 246
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ + + F SQL WR+FY +L+ +VV ++K + W D
Sbjct: 247 ASAAAAADDEERRESVAEFQ--SQLAWREFYTQVLFANRSVVTDNYKTYERPLQWRDDPE 304
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
A W G TGYP++D+ + QL ++HNR+RM+ ASFL K++ I+W+ G +F
Sbjct: 305 A---LQAWKDGETGYPIVDAGMRQLRQEAFVHNRVRMIVASFLTKDLLIDWRAGYEWFKE 361
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
+L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D +I+ Y+P+L
Sbjct: 362 RLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKTYVPELRDAEPS 421
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH W S + YP PI++HS + L+ + +
Sbjct: 422 VIHE-WPDLSLTQRRNA---APEYPDPIVDHSERRDQALEMFETARG 464
>gi|355652212|ref|ZP_09056647.1| hypothetical protein HMPREF1030_05733 [Pseudomonas sp. 2_1_26]
gi|354824420|gb|EHF08671.1| hypothetical protein HMPREF1030_05733 [Pseudomonas sp. 2_1_26]
Length = 476
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L I AV +N +Y
Sbjct: 47 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 107 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 158 ERLYQAPPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 216
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 217 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 334 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 394 TDAVPYFRLFNPLSQSERFDPRGEFIRYWLPELAGLERKAIHDP--------SSLGLFAG 445
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 446 VDYPRPMVDLKASRERALAAF---RNLPPRD 473
>gi|187734160|ref|YP_001879362.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
gi|187431152|gb|ACD10426.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
Length = 472
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 149/445 (33%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R IAS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFIASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|424944563|ref|ZP_18360326.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa NCMG1179]
gi|346061009|dbj|GAA20892.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa NCMG1179]
Length = 476
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L + AV +N +Y
Sbjct: 47 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 107 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 158 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 216
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 217 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 334 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 394 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 445
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 446 VDYPRPMVDLKASRERALAAF---RNLPPRD 473
>gi|239835007|ref|ZP_04683335.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
3301]
gi|444309630|ref|ZP_21145264.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium M86]
gi|239823070|gb|EEQ94639.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
3301]
gi|443487021|gb|ELT49789.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium M86]
Length = 461
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 230/421 (54%), Gaps = 15/421 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ +S+ L+ +L + +LI+ A I++L+ + N D V N Y PQ D +I
Sbjct: 53 WLEQSLDLLARSLNERNIELIVADGEALNTIEQLIEENNFDTVFWNRRYAPQEREVDAVI 112
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K LK G + S+ ++ E EI + G Y +F+ Y K + S L P +
Sbjct: 113 KSGLKDKGLRVESFAGNLLVEPWEIKSGNGGSYQVFTPYAKSLRQHGVSRPLPL---PDR 169
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYN 209
S V + K + S +S L + A+ L + F I++Y
Sbjct: 170 SVETTTVKHTPKQKNYKEAVWS--------RKMSGLWMIGEAAAIDQLYHFFDTTIRDYA 221
Query: 210 INRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFY 269
+R+ P ++GTS LS HLRFG IS R++ + + + T G +LS+LIWRDF+
Sbjct: 222 GDRDRPDLDGTSKLSAHLRFGEISPRQVWHATVSLMDQDHST-VPGGQKFLSELIWRDFH 280
Query: 270 QMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYM 329
LY P++ + N W+S++ +W +G TG P+ID+ + QL ++G+M
Sbjct: 281 YHQLYYRPDIAEIDMRDTLANTRWQSNSVG---INSWRRGKTGIPIIDAGMRQLWATGWM 337
Query: 330 HNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIF 389
HNR+RM+ AS L KNM I+W+ GE +F + L D D+ASN GNWQW A G + P+FR+F
Sbjct: 338 HNRVRMLVASALCKNMQIDWREGEKWFWDTLVDADVASNPGNWQWVAGCGMDAAPYFRVF 397
Query: 390 NPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
NP++Q +KFD +G+++RK++P+++ L + +IH P+ A L +AG++LG+ YP PI
Sbjct: 398 NPVLQGEKFDTKGVYVRKWVPEIAALPDCWIHKPFAAPPAVLREAGVVLGQTYPLPIFTP 457
Query: 450 S 450
S
Sbjct: 458 S 458
>gi|421519218|ref|ZP_15965890.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO579]
gi|404346203|gb|EJZ72554.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO579]
Length = 476
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L + AV +N +Y
Sbjct: 47 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 107 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 158 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 216
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 217 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 334 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 394 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 445
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 446 VDYPRPMVDLKASRERALAAF---RNLPPRD 473
>gi|209809629|ref|YP_002265168.1| deoxyribodipyrimidine photo-lyase [Aliivibrio salmonicida LFI1238]
gi|208011192|emb|CAQ81620.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme)
[Aliivibrio salmonicida LFI1238]
Length = 479
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 232/426 (54%), Gaps = 64/426 (15%)
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
S+++ L LNI + N +YE + RD ++ +L I F++ K V K I+
Sbjct: 87 TSEQLTMLCNDLNITHLFANKEYEADELARDADVRSQLTNIESHFYNAKCAVTVGK--II 144
Query: 116 NKTGKPYSIFSFYQKKW----------IEKV-------KSNKCYLQSYPVKSYLNNLVHS 158
NKT KPY +F+ ++K W IEKV + L SY + + +++ +
Sbjct: 145 NKTQKPYKVFTPFKKAWRAYFYQHFPTIEKVIPSVPLSEQQLSTLTSYLDRKFTSSMNNE 204
Query: 159 SKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSIN 218
SK+ + N I+ L FC+ +K ++Y+ R+YP+I+
Sbjct: 205 SKVWPVSNTAILKKMRL-FCR-----------------------EKSQDYHDQRDYPAID 240
Query: 219 GTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD---CIGYFTWLSQLIWRDFYQMILYC 275
GTS +S +L G +S ++ + ++ H + + G WL +LIWR+FY +LY
Sbjct: 241 GTSQISPYLAIGALSAKQCI------LRLHLEANNQLSQGQEIWLDELIWREFYTHLLYF 294
Query: 276 YPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLR 334
+P++ N +F +I W N + F WC G TGYP++D+A+ QLN++G+MHNRLR
Sbjct: 295 FPSLSKNHAFLDFEKHIQW---NNKQDQFEQWCNGETGYPIVDAAMKQLNTTGWMHNRLR 351
Query: 335 MVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQ 394
M+TASFL+K++ I+W+WGE YF + L D D ASNNG WQW AS GC S P+FRIFNP Q
Sbjct: 352 MITASFLVKDLHIDWRWGEQYFMSTLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPTTQ 411
Query: 395 SKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKK 454
S++FD G+FI+ +LP L+ L K +H P ++ NY PI++HS+ +
Sbjct: 412 SERFDNNGVFIKYWLPNLAALLGKQLHQP--------SVKPLLKPDNYVDPIVDHSVQRL 463
Query: 455 NILKRY 460
L+ Y
Sbjct: 464 KTLELY 469
>gi|433591509|ref|YP_007281005.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|448333271|ref|ZP_21522481.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|433306289|gb|AGB32101.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|445623512|gb|ELY76922.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
Length = 467
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 234/467 (50%), Gaps = 34/467 (7%)
Query: 3 VYCVFIFDKNILD---PLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE 59
V +F+ D +LD P+R + + +++ +L + SDL++ AS
Sbjct: 28 VVPLFVLDPTVLDYASPVR---------VATLLEALEDLRSQYRERGSDLLVVRGEASAA 78
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
+ ++ + + V+ N DY A RD+ ++ L+ G S D + E I G
Sbjct: 79 VPEVATEHDATTVVWNEDYSGLARERDRAVRAALEDEGIAAESVHDAIHHEPGSITPNQG 138
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
YS+FS++ KKW ++ K + ++ L + I +L DLGF
Sbjct: 139 DHYSVFSYFWKKWRDRDKREPAPEPA------------AADLAAVSGEPIPTLADLGFDD 186
Query: 180 SNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+ + T A A+ + +F I +Y R+YP+ +GTS LS HL++GTI R+L
Sbjct: 187 PEATPPTVTTAA--ARERVADFCSGPIYDYADRRDYPAESGTSRLSPHLKWGTIGPRELY 244
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
K ++ D + QL WR+FY +L P V + F I W D
Sbjct: 245 AATEKAAERAAGDDRESVREFQRQLAWREFYAHVLAFNPETVTEDFSGYEHEIEWRDDPD 304
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
A W G TG P++D+ + QL++ G+MHNR+RM+ ASFL K++ ++W+ G ++F
Sbjct: 305 A---LEAWQAGETGCPIVDAGMRQLHAEGWMHNRVRMLVASFLTKDLLLDWRAGYDWFRR 361
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
KL D D A++ G WQW+AS+G +QP+FR+FNP+ Q +++D +IR+Y+P+L+ S
Sbjct: 362 KLADHDTANDVGGWQWAASTGTDAQPYFRVFNPMKQGREYDPDAEYIREYVPELADASPA 421
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH W S K + +YP PI++H+ ++ + + ++
Sbjct: 422 EIHG-WHELSDAERK---RIAPDYPAPIVDHAARREQAIAMFERARD 464
>gi|322696650|gb|EFY88439.1| photolyase [Metarhizium acridum CQMa 102]
Length = 587
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 159/476 (33%), Positives = 245/476 (51%), Gaps = 43/476 (9%)
Query: 5 CVFI-----FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE 59
C++I F+ ++ P+R ++FI +++ L +L N D L I K+
Sbjct: 127 CMYIVSPQDFEAHLTSPVR---------VDFILRTLEILKKDLANLDIPLYIETVERRKQ 177
Query: 60 IKKLVIKL----NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
I +++L + N +YE + R+ + +L G F D + ++
Sbjct: 178 IPDKILELMEQWGSRHLFANMEYEVDELRREANLVHDLAENGKSFEVVHDTCVVPPGQLR 237
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSY--------PVKSYLNNLVHSSKLHKIINN 167
+ +G Y+++S + + W+ + ++ L+ + + +L + N
Sbjct: 238 SGSGNQYAVYSPWYRSWVAHIHADLELLELFDPPNKNPGTARKQFKDLFECAVPEAPSNK 297
Query: 168 NIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIH 226
+ K SL G S AK L F + K+ Y+ NRN P +GTS LS+H
Sbjct: 298 QLTKEE-----KRRFHSL-WPAGESAAKERLEKFCEEKVGGYSNNRNIPGEDGTSSLSVH 351
Query: 227 LRFGTISIRKLVKLIFKFIK-KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSF 284
L GTIS R V+ K K G W+S++ WRDFY+ +L +P V +NK +
Sbjct: 352 LASGTISSRTCVRTARDRNKTKRLDAGNEGIRVWISEVAWRDFYKHVLVHWPYVCMNKPY 411
Query: 285 KKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKN 344
K EY NI W +Y +++F WC+G TG+P++D+A+ QLN +GYMHNR RM+ ASFL K+
Sbjct: 412 KPEYSNIAW---SYNEEHFNAWCEGRTGFPIVDAAMRQLNHNGYMHNRCRMIVASFLSKD 468
Query: 345 MGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIF 404
+ I+W+ GE YF L D D ASNNG W +SAS G QP+FRIFNP++QS+KFD +G++
Sbjct: 469 LLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPYFRIFNPLLQSEKFDPEGVY 528
Query: 405 IRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
IRK++P+L L +K IH P Y G YPKPI+ H + L Y
Sbjct: 529 IRKWVPELQDLDSKEIHEP-----YGRGAGGKAKKAGYPKPIVNHKDCRDRALDAY 579
>gi|407069234|ref|ZP_11100072.1| deoxyribodipyrimidine photolyase [Vibrio cyclitrophicus ZF14]
Length = 476
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 152/443 (34%), Positives = 254/443 (57%), Gaps = 30/443 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL--NIDAVMINHDYEPQAII 84
+ +FI++ + +L + L + L+ A + + +L +DA + + EP+ +
Sbjct: 48 KADFIYRHLKQLELQLAEFGISLLHLKATDFDDQAAQLTRLYNELDAKCVYTNSEPE--V 105
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK------S 138
++L K L G K I +LNK G+ + +F+ ++ W+++V+ S
Sbjct: 106 DEQLRDKRLIASGIKLKMTDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQVKGIQCS 165
Query: 139 NKCYLQSYPVKSYLNNLVHSSKL--HKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKI 196
+Q+ P ++ N S L HK+ + D F + + + + +
Sbjct: 166 PAPIIQAEPTQTERLNTQLSGDLTPHKLSDEY-----DFDFPRVDSDRWPLSQDVLNS-V 219
Query: 197 LLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL-VKLIFKFIKKHYKTDCIG 255
+ N K+ +Y R+ PSI GTS LS +L G +S R L ++LI + + T +
Sbjct: 220 IPNFLANKVNDYGKFRDIPSIKGTSGLSPYLTIGAVSPRWLAIQLIQQQPDLLFDTQ-LP 278
Query: 256 YFTWLSQLIWRDFYQMILYCYPNVVNKS-FKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314
F+WL++LIWRDFY+ +++ +P +V + F+++Y+ + W D+ +F WC+G TGYP
Sbjct: 279 AFSWLNELIWRDFYKHLMFHHPRLVKGANFQQKYNGLDWYQDH---PSFKAWCEGKTGYP 335
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
L+D+A+ QL +G+MHNRLRMV ASFL K++ I+W+WGE +F + L D D ++NNG WQW
Sbjct: 336 LVDAAMRQLVETGWMHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQW 395
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
++S+GC +QP+FRIFNPI QS+KFD +GIFIRKY+P+L K+ +K++H P Y ++K
Sbjct: 396 ASSTGCDAQPYFRIFNPITQSEKFDPKGIFIRKYIPELQKIPDKHVHFP---HDY-IKKN 451
Query: 435 GIILGKNYPKPILEHSLSKKNIL 457
GI Y +PI+EH ++ L
Sbjct: 452 GI--NSEYWQPIVEHKEARLRAL 472
>gi|386060817|ref|YP_005977339.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa M18]
gi|347307123|gb|AEO77237.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa M18]
Length = 476
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L + AV +N +Y
Sbjct: 47 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 107 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 158 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 216
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 217 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 334 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 394 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 445
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 446 VDYPRPMVDLKASRERALAAF---RNLPPRD 473
>gi|416855512|ref|ZP_11911543.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 138244]
gi|334842869|gb|EGM21468.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 138244]
gi|453042710|gb|EME90449.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
PA21_ST175]
Length = 481
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L + AV +N +Y
Sbjct: 52 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVSAVHVNQEYGVNE 111
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 112 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 162
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 163 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 221
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 222 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 281
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 282 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 338
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 339 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 398
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 399 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 450
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 451 VDYPRPMVDLKASRERALAAF---RNLPPRD 478
>gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
Length = 469
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 242/447 (54%), Gaps = 33/447 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FI++ + L L + L + + A+ + +L LN + V+ N DYE
Sbjct: 48 QADFIWRRLAALQQELAAINVPLFYQQVADFREAATAVNQLAKALNANQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD ++ L G + ++ D+ I + K G+ + +F+ +++ W+ +
Sbjct: 108 QQRDLRTEQLLAEQGISWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSLFQP---- 163
Query: 143 LQSYPVKSYLNNLVHSSKLHKIIN--NNIISLNDLGFCKSNLSSLGIKTGASGAKILLNN 200
PV HS+ + N ++++ D F + S + L +
Sbjct: 164 ----PVIPR----NHSAAPWDVPNEFSHLVWHTDQMFNYPRVDSSQWPVEFEVIRTQLRD 215
Query: 201 FIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F + ++++Y+ R++P+ GTS LS +L G +S R+ V +++ + G W
Sbjct: 216 FCRERVQDYHQWRDFPAREGTSVLSPYLAIGALSARQCVARLYR--ESAMSALSEGAQVW 273
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
LS+LIWR+FYQ ++ PN+ ++ F + + W +D+ + F WC+G TGYP++D+
Sbjct: 274 LSELIWREFYQHLVAIEPNISKSRDFLEWGARLEWWNDS---EKFQRWCEGNTGYPIVDA 330
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW AS+
Sbjct: 331 AMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y + +
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSVL-- 445
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKN 465
YP P+++H ++ L+ Y K
Sbjct: 446 ---YPPPLVDHKQEREVTLRLYKTAKG 469
>gi|116052805|ref|YP_793122.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421176913|ref|ZP_15634571.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CI27]
gi|115588026|gb|ABJ14041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|404530283|gb|EKA40290.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CI27]
Length = 481
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/451 (31%), Positives = 242/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L I AV +N +Y
Sbjct: 52 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNE 111
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 112 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 162
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L F
Sbjct: 163 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRGF 221
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 222 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 281
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 282 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 338
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 339 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 398
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 399 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 450
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 451 VDYPRPMVDLKASRERALAAF---RNLPPRD 478
>gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
Length = 471
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 154/447 (34%), Positives = 245/447 (54%), Gaps = 33/447 (7%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+I L +L L++R + I +LV + +++V N YEPQAI RDK I
Sbjct: 50 WLHHSLIALGKSLNQQGLCLVLRKGAPQEIILELVAQYGVESVYWNRCYEPQAIARDKKI 109
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K L K S+ ++ E I NK G + +F+ Y K+ C
Sbjct: 110 KLALGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQ---------C-------- 152
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCK-------SNLSSLGIKTGASGAKILLNNFI 202
+ N+ L K I+ +DLG K + S G GA+ L+ FI
Sbjct: 153 RQILNIPSPFMLTKRPRGIKITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFI 212
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ Y R++P+ N TS LS HL FG IS +++ + + K D +LS
Sbjct: 213 VHHLSGYKRERDFPAKNATSRLSPHLHFGEISPWVILRAL-ELAKLEQTCDLASVEHFLS 271
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+L WR+F +LY +P + ++F+KE+D W++D ++ W KG TGYP+ID+ +
Sbjct: 272 ELGWREFSVYLLYHFPKLDCENFRKEFDAFPWQND---EQLLTCWQKGMTGYPIIDAGMR 328
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
+L ++GYMHNR+RM+ ASFL K++ I+W+ G +F + L D DLA+N+ +WQW A G
Sbjct: 329 ELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGAD 388
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ P+FRIFNP++QS+KFD G++IR+++P+L++L+++ IH PW + + + I LGK
Sbjct: 389 AAPYFRIFNPVLQSQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDA----DASSIFLGKK 444
Query: 442 YPKPILEHSLSKKNILKRYNFIKNILN 468
YPKPI++H ++ L Y IK ++
Sbjct: 445 YPKPIIDHQEARTKALSYYQQIKKGMD 471
>gi|392545379|ref|ZP_10292516.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas rubra ATCC
29570]
Length = 459
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/442 (33%), Positives = 242/442 (54%), Gaps = 45/442 (10%)
Query: 26 RRIEFIFKSIIELSINLQNYDS-DLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAII 84
RR+ ++ + EL I L D+ D A+ S+ + V N +YE
Sbjct: 54 RRVIWLGHKLAELGIRLHVLDAGDFTQVPAVVSQ----FCQANGVAQVYANREYEVNEQD 109
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQ 144
RD ++ G + + +I + + + Y +F+ ++K W+++ + YL
Sbjct: 110 RDNACQQ----AGVQLQLFDGDLIAPPGSVTTASNEMYKVFTPFKKAWLKQYEQQHFYLP 165
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIIS----LNDLGFCKSNLSSLGIKTGASGAKILLNN 200
+P +N + +I+ +S ++D K ++
Sbjct: 166 GWP---EINAAPFEWEAPEILKGEGVSDKWPVDDETLVK-----------------VVQA 205
Query: 201 FIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
FI+ K+ +Y NR++P + GTS LS +L G +S+++L+ + F+W
Sbjct: 206 FIQEKMVDYKANRDFPGVKGTSGLSPYLALGIVSVKQLLAESQLHFADLLQMTSAPAFSW 265
Query: 260 LSQLIWRDFYQMILYCYPNVVNKS-FKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+++LIWR+FY+ ++ YP + + F ++YD++ W+ D+ +F WC+G TGYP++D+
Sbjct: 266 INELIWREFYRHLICAYPKLCKGANFNEKYDHVDWQQDD---AHFKAWCEGNTGYPIVDA 322
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QLN +G+MHNRLRM+ ASFL K++ I+W+ GE+YF +KL D DLASNNG WQW+AS+
Sbjct: 323 AMRQLNQTGWMHNRLRMIVASFLTKHLLIDWRKGEHYFMSKLIDGDLASNNGGWQWAAST 382
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
GC +QP+FRIFNPI QS+KFD QG FIRK++P+LS++ K IH P L+ GI
Sbjct: 383 GCDAQPYFRIFNPISQSEKFDPQGDFIRKFVPELSEVPAKSIHFP----HEYLQAFGI-- 436
Query: 439 GKNYPKPILEHSLSKKNILKRY 460
Y KPI+EH +++ L +
Sbjct: 437 -SGYMKPIVEHKAARERALAAF 457
>gi|157692159|ref|YP_001486621.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
gi|157680917|gb|ABV62061.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
Length = 466
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 148/404 (36%), Positives = 216/404 (53%), Gaps = 26/404 (6%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSF 127
NI+AV N D RDK + L+ G +++D + +IL G Y +F+
Sbjct: 82 NINAVFFNEDEVGIGQRRDKQVTDFLEKKGIHVSTWQDTHLHGAQDILKADGSHYQVFTP 141
Query: 128 YQKKWIEK-----VKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
Y + W ++ +K +K + S +++ L + N + L + C
Sbjct: 142 YYQSWRKQEKQPVIKVDKSFFSS-------GHMICDESLSQKGNEKLRDL--IKGCSRKF 192
Query: 183 SSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+G + + L FI K++ Y R+ PS+ GTS LS L+ GTISIR + I
Sbjct: 193 DQIGTEKAMN----TLQQFIQKRLTRYQEKRDIPSVFGTSKLSRFLKTGTISIRTIFHAI 248
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
++ + Y+ + G T++ +L WRDFY MI YP + K + + W D
Sbjct: 249 YE--EALYEDE--GRETFIKELAWRDFYHMIYAHYPEMKEKEINSAFQGMRWNDDETL-- 302
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WCKG TG+PL+D+ + QLN G+MHNRLRMVTASFL K+ I+W+ GE YFA KL
Sbjct: 303 -FEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTASFLTKDYLIDWRKGEAYFAKKLV 361
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+D ASN G +QW+AS G + P+FRIFNPI QSK+FD G FIRKY+P+L + K+IH
Sbjct: 362 DYDEASNIGGFQWAASVGTDAVPYFRIFNPITQSKRFDPSGEFIRKYVPELEHIDEKWIH 421
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
P K + K+G +LG YP P ++H +K + + K
Sbjct: 422 EPSKMPIDEQLKSGCVLGDTYPLPTVDHQERRKKAISLFEEAKQ 465
>gi|294055436|ref|YP_003549094.1| deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
45221]
gi|293614769|gb|ADE54924.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
45221]
Length = 476
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 139/434 (32%), Positives = 238/434 (54%), Gaps = 18/434 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ +S+ + + + DLI R + E++ + + ++ N YE +D I
Sbjct: 55 WLHESLKRFAQSWNSCGGDLIFRNGDSLAELRAIAAESGATSIYWNRRYEGHLREQDAQI 114
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K+EL G + SY ++ E + I NK G+PY +++ Y K+ K + PV
Sbjct: 115 KRELFEDGLEVKSYNSSLLNEPHTIGNKEGRPYKVYTPY-------FKAVKDRPVARPVV 167
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNY 208
L + +L + + + + L S + GAK ++ F+ +++ Y
Sbjct: 168 PDLTAMAFPDELPQSLALDALDLLPSNQWYRKFES-KWEPSEEGAKQQVDEFLSLRVERY 226
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDF 268
+ +R+ P ++GTS LS +L FG I R+LV + + + G F +L ++ WR+F
Sbjct: 227 DTDRDRPDLDGTSALSPYLHFGQIGPRQLVHEL----ELRADLEEQGPFIFLKEIYWREF 282
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN-WCKGYTGYPLIDSAIIQLNSSG 327
+LY +P + +Y++ WE + + L+ W +G TGYP++D+ + QL +G
Sbjct: 283 AYNVLYHFPRTAESPLQPQYESFPWEQN----ADLLSLWKRGKTGYPIVDAGMRQLWQTG 338
Query: 328 YMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFR 387
+MHNR+RM+ +S L+K++ +WK G +F + L D DLASN WQWS G + P+FR
Sbjct: 339 WMHNRVRMIVSSLLVKHLLQDWKEGARWFWDTLVDADLASNTLGWQWSGGCGADAAPYFR 398
Query: 388 IFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPIL 447
IFNP+IQ KKFD + +++R+++P+LS+L NKYIH PW+A L +AGI LG +YP P++
Sbjct: 399 IFNPMIQGKKFDPEALYVRRFVPELSRLPNKYIHEPWEAPDEVLAEAGIELGVDYPYPVV 458
Query: 448 EHSLSKKNILKRYN 461
EH++ ++ L Y
Sbjct: 459 EHAVGRQRALSAYE 472
>gi|254228731|ref|ZP_04922154.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
gi|262396547|ref|YP_003288400.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|151938678|gb|EDN57513.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
gi|262340141|gb|ACY53935.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
Length = 471
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/454 (33%), Positives = 241/454 (53%), Gaps = 28/454 (6%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+E++ + L++ + + ++ ++ I + L +VM
Sbjct: 44 MAPMQADLIA--RRLEYLNDELESLNVPFLYKE---VPSFSDCTEVISEWAKTLEATSVM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
N YE D + + L F + D+ + +LNK G+ + +F+ +++ W+
Sbjct: 99 ANIHYEVNERELDAQVSEALASHDIDFELFHDKCVHPPTTVLNKQGEYFKVFTPFKRAWL 158
Query: 134 EKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASG 193
+ Q V SSKL + + S +D F SS +
Sbjct: 159 TQ-------FQMPAVTKPQEQAPLSSKLLEQLEPIRFS-SDFTFSYPRESSEDWFASTND 210
Query: 194 AKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
L F ++ + Y R++P+I+GTS LS +L G +S R+ + ++ +++ T+
Sbjct: 211 VLKQLREFARERSDAYKEERDFPAIDGTSQLSPYLAIGALSPRQCIARLYAENQQNDLTE 270
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
G TWLS++IWR+FYQ +L P +V K F D I W +Y ++ F W G T
Sbjct: 271 --GKATWLSEIIWREFYQHLLVFEPKLVKGKGFIDWEDKIQW---SYDEQAFERWKAGAT 325
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
GYP++D+A+ QLN +G+MHNRLRMV ASFL K++ I+W+WGE YF +KL D D A+NNG
Sbjct: 326 GYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKDLHIDWRWGEAYFMSKLVDGDFAANNGG 385
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL 431
WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ + NKYIH PW + L
Sbjct: 386 WQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFVRHWVPEIKSVPNKYIHKPWTWEGFSL 445
Query: 432 EKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
Y KP+++H ++ L+ + K
Sbjct: 446 --------LEYHKPMVDHKTEREITLRLFKSAKE 471
>gi|415814897|ref|ZP_11506495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68]
gi|323170823|gb|EFZ56473.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68]
Length = 472
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|107099673|ref|ZP_01363591.1| hypothetical protein PaerPA_01000691 [Pseudomonas aeruginosa PACS2]
gi|254244448|ref|ZP_04937770.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
gi|420141848|ref|ZP_14649487.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CIG1]
gi|421156086|ref|ZP_15615540.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
14886]
gi|421163219|ref|ZP_15621946.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
25324]
gi|421182722|ref|ZP_15640194.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa E2]
gi|126197826|gb|EAZ61889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
gi|403245405|gb|EJY59222.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CIG1]
gi|404519465|gb|EKA30217.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
14886]
gi|404529467|gb|EKA39503.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
25324]
gi|404541468|gb|EKA50825.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa E2]
Length = 481
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L + AV +N +Y
Sbjct: 52 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNE 111
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 112 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 162
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 163 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 221
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 222 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 281
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 282 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 338
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 339 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 398
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 399 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 450
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 451 VDYPRPMVDLKASRERALAAF---RNLPPRD 478
>gi|46446306|ref|YP_007671.1| photolyase [Candidatus Protochlamydia amoebophila UWE25]
gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
Length = 471
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 244/437 (55%), Gaps = 26/437 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
+++ S+I L +L LIIR K + ++ + D V N YEP I D I
Sbjct: 54 WLYYSLISLKNDLSELGLSLIIRKEDPLKSLLEIAHETGADTVYWNRRYEPMLIQDDAKI 113
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K EL+ G K S+ ++FE I NK GKP+ +F+ + W + +K N + PV
Sbjct: 114 KTELQKQGIKAHSFNGNLLFEPWTIANKQGKPFQVFTPF---WNQCLKLNDPEV-PLPVP 169
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK----TGASGAKILLNNFIKKI 205
L V ++ +I SLN L K + G+K GA AK LL + +
Sbjct: 170 HSLKKFVG-----QLQTESIDSLNLLPKIKWDK---GLKEVWSPGAKSAKALLKKGLTGV 221
Query: 206 KNYNIN-RNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ ++ R+ P +GTS LS +L FG IS R +I++ +K++ + G +L Q+
Sbjct: 222 IDQYLDIRDLPDHDGTSLLSPYLHFGEISPR----MIWQAVKEN--STSKGAEGYLRQIG 275
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
WR+F +LY +P K + ++++ W++D K+N W KG TGYP+ID+ + QL
Sbjct: 276 WREFAHHLLYHFPETPQKPLRSQFNSFSWKND---KQNLKAWQKGQTGYPIIDAGMRQLW 332
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
G+MHNR+R++ SFL+K++ I+W G +F + L D DLA+N WQW A G + P
Sbjct: 333 KIGWMHNRVRLIVGSFLVKDLMIHWIEGAKWFWDTLVDADLANNTMGWQWIAGCGADAAP 392
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNPI Q +KFD +G +++K++P+L L +++H PW+A L ++GI LG NYPK
Sbjct: 393 YFRIFNPITQGEKFDPEGNYVKKWVPELINLPKEWLHQPWEAPEEILRQSGIELGINYPK 452
Query: 445 PILEHSLSKKNILKRYN 461
PI+ H+ +++ L+ Y+
Sbjct: 453 PIVNHAKAREEALQAYS 469
>gi|357384343|ref|YP_004899067.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
gi|351592980|gb|AEQ51317.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
Length = 466
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/438 (33%), Positives = 230/438 (52%), Gaps = 32/438 (7%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ +S+ LS L L R + K I ++V + + V N Y+P D I
Sbjct: 53 WLHESLAALSGALAERGVRLSFREGESGKIIPEMVRETKAERVYWNRRYDPAGRTHDAAI 112
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K L+ G + S+ ++ E +I K G PY +F+ + W L+ P+
Sbjct: 113 KTALRADGAEVASFNASLLVEPWDIATKQGTPYGVFTPF---W--------TALREKPIP 161
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI----KTGASGAKILLNNFIKKI 205
+ +I + IS L F K + GI G AK +L++F+ +
Sbjct: 162 DPIG---------RIEKHEAISAPALDFGKRPAWAGGILERWAIGEDAAKRVLSDFLDDL 212
Query: 206 -KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+Y +R+ P +GTS +S HLRFG I R++ + I G +LS++
Sbjct: 213 LADYPNDRDLPRKDGTSRMSPHLRFGEIGPRQIWFAVRHLIDSKPSMASAGE-KFLSEVA 271
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
WR+F +LY ++ S ++ +D I W SD+ A K W KG TG P++D+ + QL
Sbjct: 272 WREFSYHLLYHRDDIARHSMQERFDEIEWRSDSKALKA---WQKGQTGIPIVDAGMRQLW 328
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
+G+MHNR+RM+TAS L KN+ I+W+ GEN+F + L D D A+N +WQW A SG + P
Sbjct: 329 QTGWMHNRVRMLTASLLTKNLLIDWRKGENWFWDTLVDADPANNPASWQWVAGSGADAAP 388
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNP+ Q +KFD G ++R+++P+LS + +K++H PW A L KA + G YP
Sbjct: 389 YFRIFNPVTQGEKFDPHGDYVRQWVPELSDVPDKWVHKPWAADPEILNKASLKSGTAYPA 448
Query: 445 PILEHSLSKK---NILKR 459
PI++ S++ ++LKR
Sbjct: 449 PIVDLKASRERALSVLKR 466
>gi|117919615|ref|YP_868807.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3]
gi|117611947|gb|ABK47401.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3]
Length = 493
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 148/431 (34%), Positives = 232/431 (53%), Gaps = 25/431 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I+FI + + L+ L + + + + KE+ + KL ++ V + E
Sbjct: 63 QIDFIQRHVNLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINE 122
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ G + + +LN +G Y +F+ + +KW E +
Sbjct: 123 QKRDQACLD----TGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREIAAKRAIF 178
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL-SSLGIKTGASGAKILLNNF 201
+ P L ++ K IS + S L SS G AK +L F
Sbjct: 179 PLAVPAP--LGPMLPEPK--------PISFKERFQSTSKLTSSEQWAAGEGQAKRILTAF 228
Query: 202 IK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
IK K+++Y +R++P+++GTS +S +L G +S R+ + + D TWL
Sbjct: 229 IKQKVQDYKQDRDFPALDGTSVISPYLALGVLSPRQCIAALLGRFPDVIVDDTSPGRTWL 288
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++LIWR+FY+ +L +P++ +F ++ D++ W ++ + FL WC+G TGYP++D+A
Sbjct: 289 NELIWREFYRHLLVAFPDLSKGHNFNRQADHVQWRNN---QAEFLAWCEGKTGYPIVDAA 345
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QLN +G+MHNRLRMV ASFL K++ I+W+WGE YF L D DLA+NNG WQWSA G
Sbjct: 346 MRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCG 405
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
C +QP+FRIFNPI QS+KFD G FIRKYLP+L+ K +H P + L +A ++
Sbjct: 406 CDAQPYFRIFNPISQSEKFDPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEAPMLES 465
Query: 440 KN-YPKPILEH 449
+ YP I+EH
Sbjct: 466 DSAYPCAIVEH 476
>gi|416267586|ref|ZP_11641904.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112]
gi|420378972|ref|ZP_14878465.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 225-75]
gi|320175355|gb|EFW50459.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112]
gi|391305965|gb|EIQ63732.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 225-75]
Length = 472
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|414167272|ref|ZP_11423501.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
gi|410891089|gb|EKS38887.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
Length = 488
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/456 (31%), Positives = 247/456 (54%), Gaps = 28/456 (6%)
Query: 3 VYCVFIFDK--NILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ +++ D+ L P R + I R ++ +S+ L +L L++R A++ I
Sbjct: 35 LVLLYVLDEESTSLRPPRGRAIGSASRW-WLAQSLRSLQASLAARGQTLVLRSGAAARVI 93
Query: 61 KKLVIKLNIDAVM-INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
L + +V I D Q+ + ++ + LK IG + + ++ + + NK G
Sbjct: 94 SDLAQDIEAASVHWIESDVPSQSAV-ERDVTAALKEIGVQARGFPGDLLVKPASLRNKEG 152
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
+ +F+ + K+ V S Q PV L + ++++ S N L
Sbjct: 153 RGLRVFTPFWKR----VLSLGDPPQPLPVPKKLK------PGPAVASDDLASWN-LEPKH 201
Query: 180 SNLSSLGIK----TGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISI 234
+ + G++ G S A+ L++F++ IK Y R+ P +GTS LS HLRFG IS
Sbjct: 202 PDWAG-GLRDTWTPGESAAQTRLHDFLETGIKGYATLRDRPDRDGTSRLSPHLRFGEISP 260
Query: 235 RKLVKLI-FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
R++ F +K +G F LS+L WR+F + +L+ P++ K+ + +D W
Sbjct: 261 RQVWHAANFAAAQKPDIASDVGKF--LSELGWREFSRHLLFDLPDLAEKNLQSSFDAFPW 318
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
D K W +G TGYP++D+ + +L +G MHNR+RMV ASFL+K++ I+W+ GE
Sbjct: 319 RRD---AKALRAWQRGRTGYPIVDAGMRELWHTGVMHNRVRMVVASFLVKHLLIDWRHGE 375
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
+F + L D D SN +WQW A SG + P+FR+FNP++Q +KFD G ++ +++P+L+
Sbjct: 376 KWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDPDGAYVSRWVPELA 435
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
+LS K IH PW+A+ +L AG+ LG+NYP+P+++H
Sbjct: 436 RLSAKLIHQPWEATPMELAAAGVTLGENYPEPMVDH 471
>gi|339493937|ref|YP_004714230.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338801309|gb|AEJ05141.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 476
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 143/451 (31%), Positives = 242/451 (53%), Gaps = 35/451 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F ++++EL+ LQ + L+IR + A + KL +L + + N +Y
Sbjct: 48 KVDFWLRNLVELAGRLQALNVPLLIRDVEDWQAAPDALLKLCQELAVQRLHYNDEYGVNE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN--K 140
RD+ + L+ G Y DQ++F +L ++G + +F +++ + ++ +
Sbjct: 108 QRRDQAVVARLRAAGIDVRGYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLAMSLPA 167
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN--LSSLGIKTGASGAKILL 198
C P ++ + +++ GF + + L +L G + A+ L
Sbjct: 168 CVAPPAPQQAM------------TVTSDVPPDEVRGFDRPSDYLRTL-WPAGETFAQHRL 214
Query: 199 NNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
FI+ + Y+ R+ P+ GTS LS +L G ISIR+ + + + G
Sbjct: 215 AAFIEDDLHQYHQRRDLPAEPGTSQLSAYLAAGVISIRQCLHAAVASNRGELDSGSAGAT 274
Query: 258 TWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TW+++L+WR+FY+ IL YP V ++++F+ E + + W A W +G TG+P+I
Sbjct: 275 TWINELLWREFYKHILVGYPRVSMHRAFRAETEALPWRR---ATDELQAWQEGRTGFPII 331
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QL +G+MHNRLRMVTA FL KN+ I+W+ GE +F L D DLA+NNG WQWSA
Sbjct: 332 DAAMRQLRETGWMHNRLRMVTAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSA 391
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G S P+FR+FNPI QS++FD G F+R++LP+L L + IH+P S
Sbjct: 392 STGTDSVPYFRLFNPISQSQRFDPDGQFLRRWLPELQGLGKREIHNPSAQRS-------- 443
Query: 437 ILGK-NYPKPILEHSLSKKNILKRYNFIKNI 466
+ GK +YP PI++ S+ L + + ++
Sbjct: 444 LFGKADYPAPIIDLGESRARALDAFRNLPDV 474
>gi|386020605|ref|YP_005938629.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166]
gi|327480577|gb|AEA83887.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166]
Length = 476
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 144/451 (31%), Positives = 241/451 (53%), Gaps = 35/451 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F ++++EL+ LQ + L+IR A A + KL +L + + N +Y
Sbjct: 48 KVDFWLRNLVELAGRLQALNVPLLIRDAEDWQAAPDALLKLCQELAVQRLHYNDEYGVNE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN--K 140
RD+ + L+ G Y DQ++F +L ++G + +F +++ + ++ +
Sbjct: 108 QRRDQAVAARLRAAGIDVRGYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPA 167
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN--LSSLGIKTGASGAKILL 198
C P + + +++ GF + + L +L G + A+ L
Sbjct: 168 CVAPPAPQQPM------------TVTSDVPPDEVRGFDRPSDYLRTL-WPAGETFAQHRL 214
Query: 199 NNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
FI+ + Y+ R+ P+ GTS LS +L G ISIR+ + + + G
Sbjct: 215 AAFIEDDLHQYHQRRDLPAEPGTSQLSAYLAAGVISIRQCLHAAVASNRGELDSGSAGAT 274
Query: 258 TWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TW+++L+WR+FY+ IL YP V ++++F+ E + + W A W +G TG+P+I
Sbjct: 275 TWINELLWREFYKHILVGYPRVSMHRAFRAETEALPWRR---ATDELQAWQEGRTGFPII 331
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QL +G+MHNRLRMVTA FL KN+ I+W+ GE +F L D DLA+NNG WQWSA
Sbjct: 332 DAAMRQLRETGWMHNRLRMVTAMFLSKNLLIDWREGERWFMRNLIDGDLAANNGGWQWSA 391
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G S P+FR+FNPI QS++FD G F+R++LP+L L + IH+P S
Sbjct: 392 STGTDSVPYFRLFNPISQSQRFDPDGQFLRRWLPELQGLGKREIHNPSAQRS-------- 443
Query: 437 ILGK-NYPKPILEHSLSKKNILKRYNFIKNI 466
+ GK +YP PI++ S+ L + + ++
Sbjct: 444 LFGKADYPAPIIDLGESRARALDAFRNLPDV 474
>gi|82543137|ref|YP_407084.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227]
gi|416303529|ref|ZP_11653611.1| Deoxyribodipyrimidine photolyase [Shigella flexneri CDC 796-83]
gi|417680882|ref|ZP_12330264.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 3594-74]
gi|420324257|ref|ZP_14826042.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri CCH060]
gi|420351466|ref|ZP_14852656.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 4444-74]
gi|421681435|ref|ZP_16121262.1| deoxyribodipyrimidine photolyase [Shigella flexneri 1485-80]
gi|81244548|gb|ABB65256.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227]
gi|320183678|gb|EFW58518.1| Deoxyribodipyrimidine photolyase [Shigella flexneri CDC 796-83]
gi|332097668|gb|EGJ02643.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 3594-74]
gi|391256636|gb|EIQ15762.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri CCH060]
gi|391287694|gb|EIQ46210.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 4444-74]
gi|404341641|gb|EJZ68046.1| deoxyribodipyrimidine photolyase [Shigella flexneri 1485-80]
Length = 472
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|30315019|gb|AAP30741.1|AF500083_1 photolyase [Fusarium oxysporum]
Length = 630
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 157/445 (35%), Positives = 236/445 (53%), Gaps = 21/445 (4%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++F+ +++ + +L D L + K + +++L + N +YE
Sbjct: 188 RVDFMLRTLEVIKHDLAKLDIPLYVETVEKRKRVPDRILELMDQWGAGHLYANMEYEVDE 247
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + ++ G F D + E+ GK Y++++ + + W+ + N
Sbjct: 248 LRREASMIRDFAENGKAFEVVHDTCVVPPGELHTGAGKQYAVYTPWYRSWVAHIHENLDL 307
Query: 143 LQSY--PVKSYLNNLVHSSKLHKI-INNNIISLNDLGFCKSNLSSLGIKTGASGAKILLN 199
L+ Y P K+ + +KL + I + S G K L SL G AK L+
Sbjct: 308 LELYEPPEKNPSSARKVFAKLFDVEIPDAPKSKRLDGEEKERLRSL-WPCGEHEAKKRLD 366
Query: 200 NFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK-KHYKTDCIGYF 257
F ++ I NY RN P+ GTS +S+HL GTIS R V+ K K G
Sbjct: 367 KFCEEMIGNYQKKRNIPAEAGTSSISVHLASGTISARTCVRTARDRNKTKKLNGGNEGIQ 426
Query: 258 TWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TW+S++ WRDFY+ +L +P V +NK FK EY NI W DN ++F WC+G TG+P++
Sbjct: 427 TWISEVAWRDFYKHVLVHWPYVCMNKPFKPEYSNISWSYDN---EHFAAWCEGRTGFPIV 483
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLN GYMHNR RM+ A FL K++ ++W+ GE YF L D D ASNNG W +SA
Sbjct: 484 DAAMRQLNHLGYMHNRCRMIVACFLAKDLLLDWRKGERYFMEHLVDGDFASNNGGWGFSA 543
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW-KASSYKLEKAG 435
S G QP+FRIFNP++QS+KFD G +IRK++P+L L K IH P+ + + K +K G
Sbjct: 544 SVGVDPQPYFRIFNPLLQSEKFDPDGDYIRKWVPELKDLDRKAIHDPYNRGAGSKAKKNG 603
Query: 436 IILGKNYPKPILEHSLSKKNILKRY 460
YP PI+ H + L Y
Sbjct: 604 ------YPAPIVTHKDCRDRALAAY 622
>gi|157154932|ref|YP_001461868.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
gi|218553235|ref|YP_002386148.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI1]
gi|218694131|ref|YP_002401798.1| deoxyribodipyrimidine photolyase [Escherichia coli 55989]
gi|300926110|ref|ZP_07141923.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
gi|301327896|ref|ZP_07221069.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
gi|332282445|ref|ZP_08394858.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
gi|407468122|ref|YP_006785436.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407483147|ref|YP_006780296.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483700|ref|YP_006771246.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415827891|ref|ZP_11514660.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1357]
gi|417135783|ref|ZP_11980568.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0588]
gi|417144606|ref|ZP_11986412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1.2264]
gi|417804024|ref|ZP_12451058.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
LB226692]
gi|417831779|ref|ZP_12478300.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
01-09591]
gi|417863934|ref|ZP_12508981.1| hypothetical protein C22711_0867 [Escherichia coli O104:H4 str.
C227-11]
gi|419276924|ref|ZP_13819185.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10E]
gi|419374372|ref|ZP_13915423.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14B]
gi|419379648|ref|ZP_13920624.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14C]
gi|419384859|ref|ZP_13925758.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14D]
gi|422959160|ref|ZP_16971091.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H494]
gi|422991385|ref|ZP_16982156.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C227-11]
gi|422993327|ref|ZP_16984091.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C236-11]
gi|422998537|ref|ZP_16989293.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
09-7901]
gi|423006999|ref|ZP_16997742.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
04-8351]
gi|423008645|ref|ZP_16999383.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-3677]
gi|423022833|ref|ZP_17013536.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4404]
gi|423027985|ref|ZP_17018678.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4522]
gi|423033819|ref|ZP_17024503.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4623]
gi|423036686|ref|ZP_17027360.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041804|ref|ZP_17032471.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048493|ref|ZP_17039150.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052076|ref|ZP_17040884.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059042|ref|ZP_17047838.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C5]
gi|429722875|ref|ZP_19257766.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429775046|ref|ZP_19307047.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02030]
gi|429780233|ref|ZP_19312185.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02033-1]
gi|429784283|ref|ZP_19316196.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02092]
gi|429789621|ref|ZP_19321496.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02093]
gi|429795851|ref|ZP_19327677.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02281]
gi|429801779|ref|ZP_19333556.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02318]
gi|429805411|ref|ZP_19337157.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02913]
gi|429810220|ref|ZP_19341922.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03439]
gi|429815980|ref|ZP_19347639.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-04080]
gi|429821568|ref|ZP_19353181.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03943]
gi|429907241|ref|ZP_19373209.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429911437|ref|ZP_19377393.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429917275|ref|ZP_19383215.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922313|ref|ZP_19388234.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429923166|ref|ZP_19389082.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932061|ref|ZP_19397955.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429933662|ref|ZP_19399552.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939321|ref|ZP_19405195.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429946963|ref|ZP_19412818.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949595|ref|ZP_19415443.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429957875|ref|ZP_19423704.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432764032|ref|ZP_19998481.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE48]
gi|432880293|ref|ZP_20096984.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE154]
gi|450212067|ref|ZP_21894440.1| deoxyribodipyrimidine photolyase [Escherichia coli O08]
gi|157076962|gb|ABV16670.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
gi|218350863|emb|CAU96561.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
55989]
gi|218360003|emb|CAQ97550.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
IAI1]
gi|300417809|gb|EFK01120.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
gi|300845580|gb|EFK73340.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
gi|323185134|gb|EFZ70500.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1357]
gi|332104797|gb|EGJ08143.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
gi|340735435|gb|EGR64492.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
01-09591]
gi|340741430|gb|EGR75577.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
LB226692]
gi|341917223|gb|EGT66839.1| hypothetical protein C22711_0867 [Escherichia coli O104:H4 str.
C227-11]
gi|354856387|gb|EHF16845.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
04-8351]
gi|354857634|gb|EHF18087.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C227-11]
gi|354864402|gb|EHF24831.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C236-11]
gi|354874714|gb|EHF35080.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
09-7901]
gi|354878675|gb|EHF39022.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4404]
gi|354882467|gb|EHF42789.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-3677]
gi|354885191|gb|EHF45497.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4522]
gi|354887800|gb|EHF48067.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4623]
gi|354900902|gb|EHF61033.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354904083|gb|EHF64178.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354906540|gb|EHF66615.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354917501|gb|EHF77465.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354921619|gb|EHF81541.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C4]
gi|371595434|gb|EHN84284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H494]
gi|378132093|gb|EHW93445.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10E]
gi|378224435|gb|EHX84637.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14B]
gi|378233031|gb|EHX93123.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14C]
gi|378236451|gb|EHX96497.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14D]
gi|386153637|gb|EIH04926.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0588]
gi|386164489|gb|EIH26275.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1.2264]
gi|406778862|gb|AFS58286.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055444|gb|AFS75495.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064157|gb|AFS85204.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|429350547|gb|EKY87276.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02030]
gi|429351917|gb|EKY88636.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02033-1]
gi|429353245|gb|EKY89954.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02092]
gi|429367158|gb|EKZ03759.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02093]
gi|429368069|gb|EKZ04661.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02281]
gi|429369806|gb|EKZ06380.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02318]
gi|429381851|gb|EKZ18326.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02913]
gi|429385184|gb|EKZ21638.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03943]
gi|429385707|gb|EKZ22160.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03439]
gi|429397400|gb|EKZ33747.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-04080]
gi|429398353|gb|EKZ34695.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429398402|gb|EKZ34741.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429409129|gb|EKZ45359.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429417589|gb|EKZ53736.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429421257|gb|EKZ57378.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429422998|gb|EKZ59106.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429426999|gb|EKZ63084.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429434487|gb|EKZ70513.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429439472|gb|EKZ75455.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429443740|gb|EKZ79688.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429450520|gb|EKZ86415.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429456737|gb|EKZ92582.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9941]
gi|431312921|gb|ELG00905.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE48]
gi|431413248|gb|ELG96040.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE154]
gi|449322152|gb|EMD12152.1| deoxyribodipyrimidine photolyase [Escherichia coli O08]
Length = 472
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 KL--DYPQPIVDHKEARLRTLAAYE 466
>gi|358381423|gb|EHK19098.1| DNA photolyase [Trichoderma virens Gv29-8]
Length = 630
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 157/449 (34%), Positives = 240/449 (53%), Gaps = 29/449 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++FI +++ L +L D L + K+I +++L + + + N +YE
Sbjct: 188 RVDFILRTLNVLKDDLAALDIPLYMETVDKRKDIPHRILELLEEWDCNHLFANMEYEVDE 247
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + + G F D + E+ + +GK Y++++ + + W+ + N
Sbjct: 248 LRREAHMIRHFADNGKSFEVVHDTCVVPPGELHSGSGKQYAVYTPWYRAWMAHIHENLDL 307
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK-------TGASGAK 195
L+ Y + V K K+ + I + LS+ K G A
Sbjct: 308 LELYDQPEKNPDGVRQ-KFQKLFDCRIPDAPE----NKQLSNEEKKRFRALWPCGEHEAM 362
Query: 196 ILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK-KHYKTDC 253
L NF ++ I NY+ RN P +GTS LS+HL G IS R V+ K K
Sbjct: 363 SRLENFCEEAIGNYHNKRNIPGDDGTSCLSVHLASGAISSRTCVRTARDRNKTKKLDGGH 422
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
G W+S++ WRDFY+ +L +P V +NK FK EY NI W +Y K +F WC+G TG
Sbjct: 423 QGIQVWISEIAWRDFYKHVLVNWPYVCMNKPFKPEYSNIRW---SYDKDHFAAWCEGRTG 479
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
+P++D+A+ QLN GYMHNR RM+ ASFL K++ I+W+ GE YF L D D ASNNG W
Sbjct: 480 FPIVDAAMRQLNHMGYMHNRCRMIVASFLSKDLLIDWRMGERYFMEHLVDGDFASNNGGW 539
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW-KASSYKL 431
+SAS G QP+FRIFNP++QS+KFD G +IRK++P+L +L++K IH P+ + + K
Sbjct: 540 GFSASVGVDPQPYFRIFNPLLQSEKFDPNGNYIRKWVPELKELTDKEIHDPYNRGAGTKA 599
Query: 432 EKAGIILGKNYPKPILEHSLSKKNILKRY 460
+K G YPK I++H ++ L Y
Sbjct: 600 KKQG------YPKQIVDHKGARDRALSAY 622
>gi|15599855|ref|NP_253349.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
gi|418588036|ref|ZP_13152053.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P1]
gi|418590121|ref|ZP_13154036.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P2]
gi|9950915|gb|AAG08047.1|AE004880_3 deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
gi|375041176|gb|EHS33889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P1]
gi|375051072|gb|EHS43545.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P2]
Length = 481
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L + AV +N +Y
Sbjct: 52 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNE 111
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 112 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 162
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 163 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 221
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 222 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 281
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 282 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 338
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 339 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 398
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 399 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 450
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 451 VDYPRPMVDLKASRERALAAF---RNLPPRD 478
>gi|425304178|ref|ZP_18693965.1| deoxyribodipyrimidine photo-lyase [Escherichia coli N1]
gi|408231600|gb|EKI54866.1| deoxyribodipyrimidine photo-lyase [Escherichia coli N1]
Length = 472
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 240/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMCKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 TL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|262278230|ref|ZP_06056015.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
calcoaceticus RUH2202]
gi|262258581|gb|EEY77314.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
calcoaceticus RUH2202]
Length = 480
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 241/429 (56%), Gaps = 21/429 (4%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK----KLVIKLNIDAVMINHDYEPQA 82
+I F + + +L L+ + LII+ K+I KL +LNI+ V N +
Sbjct: 51 KINFYLRQLQQLKKELEQLNIPLIIQVIPYWKDIADYISKLAQQLNIENVYSNIEVGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK++++ L + F + D+ IF I N++ +PY +FS ++K K+ +
Sbjct: 111 LKRDKIVQQALNQQSKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYSKLDISGL- 169
Query: 143 LQSYPVKSYLNNLVHS-SKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
Q YP+ N S S + + +I + D K TG A L+ F
Sbjct: 170 PQCYPIPEKQNAYPQSFSNIKSLGLEDIEAFFDSSIPKEQQDLW--PTGEDFALEQLDLF 227
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
I + +Y + R++P++ GTS LS +L G +SIR+ ++ +F+ ++ G TWL
Sbjct: 228 INDHLSHYKLERDFPNVKGTSQLSPYLNLGILSIRQCLQALFRAEHGNFHLTNEGQQTWL 287
Query: 261 SQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
+L+WR+FYQ IL+ +P+V FKK NI WE++ +++ + W G TG P+ID+
Sbjct: 288 DELLWREFYQHILFDFPHVSKHYPFKKNTQNIKWENN---QEHLVAWQNGQTGIPIIDAG 344
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW AS+G
Sbjct: 345 MRQLQKTGWMHNRVRMITAMFLCKNLLIDWRVGEQWFMQHLIDGDLAANNGGWQWCASTG 404
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FRIFNPI QSKKFD G +IR+++ +L+ L NK IH P+ ++ L
Sbjct: 405 TDAVPYFRIFNPIAQSKKFDPNGDYIRQWVNELAHLDNKMIHEPYSTKTH--------LQ 456
Query: 440 KNYPKPILE 448
NYPKPI++
Sbjct: 457 LNYPKPIVD 465
>gi|420334892|ref|ZP_14836512.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-315]
gi|391267483|gb|EIQ26419.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-315]
Length = 472
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 144/445 (32%), Positives = 237/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ V + K+ + S L + + + + A L
Sbjct: 165 G------------MPECVAAPKVRSSGSIEPSSSITLNYPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|298490155|ref|YP_003720332.1| deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
gi|298232073|gb|ADI63209.1| Deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
Length = 479
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 155/454 (34%), Positives = 240/454 (52%), Gaps = 31/454 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ VF D IL+ + RI+++ + L S L+I Y I
Sbjct: 31 IVGVFCLDPCILN----SDDVAPARIKYMMGCLQSLEKQYTQAGSQLVILYDNPIAVIPA 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L L + AV N D EP A IRD + L+ G + + DQ++ +EIL+ + P
Sbjct: 87 LAEALKVKAVFWNWDVEPYAQIRDNDVICVLREKGIQTLNQNWDQLLHSPDEILSGSKTP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN----NIISLNDLGF 177
Y++++ + K W K K+N PV + N+ ++ +I N+ S DLGF
Sbjct: 147 YTVYTPFWKNWSSKPKAN-------PVATLKNSEGLTAAEQEIAKQSGAINLPSAQDLGF 199
Query: 178 CKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
L I+ G + AK L F I Y RN+P+++GTS LS L+FG I IR
Sbjct: 200 IWDG--ELIIEPGEAVAKARLETFTTSAINEYQEQRNFPTVHGTSQLSAALKFGVIGIRT 257
Query: 237 LVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + ++ + TW + WR+FYQ +Y +P + N +++ + W++
Sbjct: 258 IWQATKELLETSNSEEVTASIRTWQQEFAWREFYQHAMYHFPALANGAYRDIFKKFPWQN 317
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+ + +F WC+G TGYP++D+A+ QLN G+MHNR RM+ ASFL K++ IN +WGE Y
Sbjct: 318 N---QAHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVASFLTKDLIINPQWGEKY 374
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F KL D DL++NNG WQWSASSG S+P RIFNP Q++KFD G +IR+++ +L +
Sbjct: 375 FMQKLIDGDLSANNGGWQWSASSGMDSKP-LRIFNPASQAQKFDIDGEYIRQWVRELKSV 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
+Y+ S + LE+ + YP PI++H
Sbjct: 434 DTEYLVS---GNITPLERRAV----GYPTPIVDH 460
>gi|345004881|ref|YP_004807734.1| deoxyribodipyrimidine photo-lyase [halophilic archaeon DL31]
gi|344320507|gb|AEN05361.1| Deoxyribodipyrimidine photo-lyase [halophilic archaeon DL31]
Length = 498
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 142/476 (29%), Positives = 240/476 (50%), Gaps = 39/476 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD +L + G D R+ F+ ++ L + SDL++ + +
Sbjct: 27 VLPVFVFDDEVL----THG--SDVRVRFMLDALAALREQYRERGSDLVVAQGDPATVLPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + +++ N DY + RD ++ L+ S+ D + E I G PY
Sbjct: 81 LAAAADAESIHWNEDYSMLSRERDARVRLALERADVARESHHDGQLHEPGTIRTNQGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYP----------VKSYLNNLVHSSKLHKIINNNIISL 172
S+++++ KKW ++ K + + P V + KL ++ + ++
Sbjct: 141 SVYTYFWKKWRDREKPD-PFPAPEPADLTDANELGVDTLTGTATDGEKLDSVLRAGLPTI 199
Query: 173 NDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGT 231
+LGF + + G A+ L F ++ I Y+ +R+YP+ +G+S LS +RFGT
Sbjct: 200 EELGFTEPTAELR--EAGTEAARERLRTFREEAIFQYDSDRDYPAKDGSSRLSEQIRFGT 257
Query: 232 ISIRKLVKLIFKFIKKHYKTDC----------IGYFTWLSQLIWRDFYQMILYCYPNVVN 281
I +R+L +++ D + F SQL WR+FY +L+ P+VV
Sbjct: 258 IGLRELYAETEAAMREARSRDEGEEGSDAQDNVEAFQ--SQLAWREFYTQVLFFTPHVVT 315
Query: 282 KSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFL 341
+++K + + W D A W G TGYP++D+ + QL + +MHNRLRM+ ASFL
Sbjct: 316 ENYKSYEEGLEWREDEEA---LEAWKAGKTGYPIVDAGMRQLRAEAWMHNRLRMIVASFL 372
Query: 342 IKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQ 401
K++ ++W+ G +F KL D D A++NG WQW+AS+G +QP+FRIFNP Q +++D
Sbjct: 373 TKDLLLDWREGYAHFREKLADHDTANDNGGWQWAASTGTDAQPYFRIFNPTTQGERYDAD 432
Query: 402 GIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
+I++Y+P+L L IH W S + E+A L YP PI++H ++ L
Sbjct: 433 AEYIKEYVPELRDLEADEIHG-WVDLSDE-ERAA--LAPEYPAPIVDHGARREEAL 484
>gi|148975313|ref|ZP_01812237.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium
SWAT-3]
gi|145965237|gb|EDK30487.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium
SWAT-3]
Length = 471
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 152/445 (34%), Positives = 252/445 (56%), Gaps = 39/445 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLI----IRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FIF+ + +L L + L+ + SK++ +L +L AV N + E
Sbjct: 48 KADFIFRHLKQLEAELADLGITLLHLKATDFDDQSKQLTELYQQLGSQAVFANSEPEVDE 107
Query: 83 IIRDKLIKKE---LKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN 139
RD+ + L++ C V+ +LN+ G+ + +F+ ++ W+++V++
Sbjct: 108 QARDQQLISSGINLQISDCD-------VMLPLGSVLNQQGEMFKVFTPFKNAWLKEVQAK 160
Query: 140 KCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN-----DLGFCKSNLSSLGIKTGASGA 194
+Q P L + ++ NN+ +L D F + S + G
Sbjct: 161 G--IQCSPAV-----LTSKNNAKALLPNNLQTLQLASDYDFDFPHVDSSRWPLSQDVLG- 212
Query: 195 KILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL-VKLIFKFIKKHYKTDC 253
++ N K+ +Y R+ PS+ GTS LS +L G +S R L ++LI + + T
Sbjct: 213 NVIPNFLANKVNDYAHLRDIPSVKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQ- 271
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVVNKS-FKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+ F+WL++LIWRDFY+ +++ +P +V + F+++Y+ + W D+ NF WC+G TG
Sbjct: 272 LPAFSWLNELIWRDFYKHLMFHHPKLVKGANFQQKYNGLDWYQDH---PNFKAWCEGKTG 328
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
YPL+D+A+ QL +G+MHNRLRMV ASFL K++ I+W+WGE +F + L D D ++NNG W
Sbjct: 329 YPLVDAAMRQLVDTGWMHNRLRMVVASFLTKHLLIDWRWGERFFMDHLIDGDFSANNGGW 388
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QW++S+GC +QP+FRIFNPI QS+KFD +GIFIRKY+P+L + +K++H P Y +
Sbjct: 389 QWASSTGCDAQPYFRIFNPITQSEKFDPKGIFIRKYIPELKNIPDKHVHFP---HDY-IA 444
Query: 433 KAGIILGKNYPKPILEHSLSKKNIL 457
K GI Y +PI+EH ++ L
Sbjct: 445 KNGI--NSEYWQPIVEHKEARLRAL 467
>gi|417152493|ref|ZP_11991284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0497]
gi|417579974|ref|ZP_12230792.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_B2F1]
gi|345343163|gb|EGW75553.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_B2F1]
gi|386169217|gb|EIH35725.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0497]
Length = 472
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 149/445 (33%), Positives = 242/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + +Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGDYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + +FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAASYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 KL--DYPQPIVDHKEARLRTLAAYE 466
>gi|422834749|ref|ZP_16882809.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E101]
gi|432453458|ref|ZP_19695696.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE193]
gi|433032198|ref|ZP_20219973.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE112]
gi|371613933|gb|EHO02421.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E101]
gi|430974091|gb|ELC91029.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE193]
gi|431558805|gb|ELI32389.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE112]
Length = 472
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 241/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + IK++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|359394409|ref|ZP_09187462.1| Deoxyribodipyrimidine photo-lyase [Halomonas boliviensis LC1]
gi|357971656|gb|EHJ94101.1| Deoxyribodipyrimidine photo-lyase [Halomonas boliviensis LC1]
Length = 474
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 236/438 (53%), Gaps = 30/438 (6%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
R + + ++ L+I L + D I RY A + + ++ + +++ + NH+Y R
Sbjct: 55 RGVAAVKTALNGLNIPLLHRD---IERYDQAPEALLEIAREYDVEQLHFNHEYALNERRR 111
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
D+ ++ K Y D V F +L G Y +F+ + K W ++V +++ L++
Sbjct: 112 DQTVQDAFKQADIAAHGYHDAVAFAPGSLLTGKGDYYGVFTPFSKAWHKQVSADQLALRA 171
Query: 146 YP-VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK- 203
P V++ L + S L ++ + +N + G + A L F++
Sbjct: 172 TPQVQAPLG--IQSDSLPELPTLDSTPVNGQLW----------PAGENAAADNLARFLRF 219
Query: 204 KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
+ ++Y+ R+ P + GTS LS +L G IS R+ ++ + + IG TW+++L
Sbjct: 220 RGRHYSAQRDLPKVRGTSELSPYLALGVISHRQCLQAVMAENGGNLADGDIGLTTWVNEL 279
Query: 264 IWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
+WR+FYQ + +P V + F++ + W DN + F WC+G TGYP++D+A+ Q
Sbjct: 280 VWREFYQHVAVGFPQVCRYQPFQEHTKQLAWRDDN---EGFQAWCEGQTGYPIVDAAMRQ 336
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
L ++G+MHNRLRM+TA FL K++ I+W+ GE +F L D + +NNG WQW+AS+G +
Sbjct: 337 LVATGWMHNRLRMITAMFLSKHLLIDWRRGEAFFMRHLIDGEFCANNGGWQWAASTGTDA 396
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNY 442
P+FRIFNP QS +FD +G FI +LP+L++L K H+P ++ NY
Sbjct: 397 APYFRIFNPTTQSTRFDAEGEFIAHWLPELAELPAKARHAP---------PQDLLTDINY 447
Query: 443 PKPILEHSLSKKNILKRY 460
P PI++H +++ L+ +
Sbjct: 448 PAPIVDHKAARQRALEAF 465
>gi|432945847|ref|ZP_20141629.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE196]
gi|433042201|ref|ZP_20229726.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE117]
gi|431462534|gb|ELH42745.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE196]
gi|431559550|gb|ELI33098.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE117]
Length = 472
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + IK++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGITGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|297521407|ref|ZP_06939793.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50]
Length = 452
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 26 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 85
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 86 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 143
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 144 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 191
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 192 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 249
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 250 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 306
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 307 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 366
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 367 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 422
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 423 ML--DYPQPIVDHKEARLRTLAAYE 445
>gi|419305250|ref|ZP_13847161.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11D]
gi|419310306|ref|ZP_13852178.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11E]
gi|378152384|gb|EHX13481.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11D]
gi|378160613|gb|EHX21606.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11E]
Length = 472
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 149/445 (33%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+ ASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMIIASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
Length = 478
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 146/440 (33%), Positives = 238/440 (54%), Gaps = 24/440 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L L+ A I +LV + DAV N YEP AI RD +
Sbjct: 53 WLHHSLAALKEDLPG----LVFLRGSARHLIPELVQETGADAVYWNRCYEPHAIERDSAL 108
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K+ LK S+K ++FE ++ KTG PY ++S + K +K+ P
Sbjct: 109 KESLKTDLIDAKSFKASLLFEPWDVETKTGGPYKVYSPFWKA-AQKI----SVPDPLPAP 163
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG---IKTGASGAKILLNNFIKK-I 205
+ +N + +N+ L +L K N + + GA+GAK L F+ +
Sbjct: 164 AEINFTAYDR------GDNLSDL-ELLPTKPNWAEGWEDIWQPGAAGAKDRLIEFLDHGL 216
Query: 206 KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIW 265
Y RN P + S LS HL FG IS +++ + G+ +LS++ W
Sbjct: 217 SGYGDKRNRPDLPNVSRLSPHLHFGDISPKQVWSATQHATARKSSLSSDGH-KFLSEIAW 275
Query: 266 RDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNS 325
R+F +LY YP + K+++ +D W ++++ W G TGYP++D+ + +L
Sbjct: 276 REFSYHLLYHYPQLPEKNWRPAFDAYPWRE---SEEDLKKWQTGLTGYPMVDAGMRELWH 332
Query: 326 SGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPF 385
+GYMHNR+RM+ SFL+K++ ++WK GE +F + L D DLA+N+ +WQW A SG + P+
Sbjct: 333 TGYMHNRVRMLAGSFLVKHLRLHWKHGEAWFRDTLVDADLANNSASWQWVAGSGADAAPY 392
Query: 386 FRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKP 445
FRIFNPI Q KFD G ++R+++P+L+KL K++ SP++A + L +AG+ LG+ YP P
Sbjct: 393 FRIFNPISQGPKFDPDGKYVRRWVPELAKLPTKHLFSPFEAPASVLSEAGVRLGETYPYP 452
Query: 446 ILEHSLSKKNILKRYNFIKN 465
I++H +++ L Y +K+
Sbjct: 453 IVDHGKARQAALDGYEDVKS 472
>gi|399008562|ref|ZP_10711032.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM17]
gi|398115998|gb|EJM05769.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM17]
Length = 481
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 146/453 (32%), Positives = 250/453 (55%), Gaps = 36/453 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
+++F +++ +LS +L + L+IR A + ++ +++++L I+A+ +N +Y
Sbjct: 47 KVDFWLRNLEQLSGDLARLNIPLLIRQAPSWEQAPQVLLQLCRELAIEALHVNEEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + LK G F SY DQ++F +L ++G + +FS ++K CY
Sbjct: 107 SRRDMAVASLLKSQGVGFHSYLDQLLFRPGSVLTRSGGYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKI--INNNIISLNDLGFCKS--NLSSLGIKTGASGAKILL 198
+ + S L + + + I + + GF +L +L G + A+ L
Sbjct: 158 NR---LHSALPPQLAAPRAQAALRIKADALPWQVEGFPTPGPHLQAL-WPAGETAAQQRL 213
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + ++ +Y R+ P+ GTS LS +L G +S R+ + + + + + G
Sbjct: 214 ARFAETQLDHYQAERDLPARPGTSQLSPYLAAGVLSPRQCLHAALQNNRGEFASGSPGAV 273
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TW+++L+WR+FY+ IL YP V +++F+ E + + W A + + TG P+I
Sbjct: 274 TWINELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRD---APEELAACQQARTGLPII 330
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QL +G+MHNRLRM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+
Sbjct: 331 DAAMRQLLETGWMHNRLRMIVAMFLTKNLLIDWRQGERFFMRHLIDGDLAANNGGWQWSS 390
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G S P+FRIFNP+ QS++FD QG FI+ +LP+L+ LS K IH+P G+
Sbjct: 391 STGTDSAPYFRIFNPLSQSQRFDSQGTFIKHWLPELAGLSEKDIHNP-------AAMGGL 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIKNILNR 469
+YP P+++ S+S++ L + KN+ +R
Sbjct: 444 FGVADYPPPMVDLSMSRERALAAF---KNLPSR 473
>gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130]
gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130]
Length = 480
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 146/475 (30%), Positives = 251/475 (52%), Gaps = 37/475 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIE-----FIFKSIIELSINLQNYDSDLIIRYAIAS 57
V VF+FD+ S+GI R++ ++ S+ L+ +L DLI+R +
Sbjct: 33 VVAVFVFDEA------SEGI---RKLGGAMRWWLHHSLKSLTKDLGALGVDLILRRGPGA 83
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
+ I L ++ + V+ N Y D IK + + + SY ++ E +
Sbjct: 84 EVIFDLAKEVGAENVVWNRRYGDAEQTVDATIKGDFE---GEAKSYGGIIMHEPINVRTG 140
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
TG PY +++ + KK+ E + + + + + ++N+ DL
Sbjct: 141 TGNPYKVYTPFWKKFCEMGLPRDAHPAPQEIAGFGGD---------VASDNLDEW-DLLP 190
Query: 178 CKSNLSSLGIKT---GASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTIS 233
K + S +K G S A+ F+ + Y+ R+ P + TS LS HLR+G IS
Sbjct: 191 TKPDWSDGWLKVWTPGESAAQTRARAFMSDDLDVYDSARDLPGDDRTSRLSPHLRWGEIS 250
Query: 234 IRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
+L ++ TW+ +L+WR+F +L +P++ N++F +YD+ W
Sbjct: 251 PYRLWQMA---QDGRLSAGSKARETWVKELVWREFSYHLLQEWPDLANENFNTKYDSFPW 307
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
SD+ + W KG TGYP++D+ + QL +G+MHNR+RM+ SFL+K++ ++W+ GE
Sbjct: 308 RSDD---EQLRAWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIVGSFLVKHLLLDWRHGE 364
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
++F + L D D ASN+ WQW A +G + PFFRIFNPI+Q++KFD G++I+K++P+L+
Sbjct: 365 DWFWDTLVDGDPASNSAQWQWVAGTGADAAPFFRIFNPIMQAEKFDKDGVYIKKWVPELA 424
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILN 468
KL KY+ SPW+A L AG+ LG YP+PI++H +++ L ++ ++
Sbjct: 425 KLPAKYLPSPWEAPLTVLRDAGVKLGDTYPRPIVDHKEARERALAALQEMREAVD 479
>gi|343503903|ref|ZP_08741705.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
gi|342813488|gb|EGU48457.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
Length = 471
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 246/453 (54%), Gaps = 45/453 (9%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL +L + L + Y + + + I+ ++ N +YE
Sbjct: 48 QADLIYRRLSELQSDLAQLNIPLLYVEVDNYQQSGQAVMDFAQTHGIERLVFNREYEVNE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
IRD ++ V + F D+ +F + NK G + +F+ +++ ++ ++ S +
Sbjct: 108 QIRDSDVESR-AVFSVQGFD--DKCLFAPGSVFNKQGSYFKVFTPFKRAYLSRLASQRV- 163
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
++V ++ K+ I + + F +++ S ++ SG ++ ++ I
Sbjct: 164 -----------DIVKTAAATKMAEEIIANFSLATFSPNSVFSYPRQS--SGQYVVRSHDI 210
Query: 203 K---------KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
+ ++ +Y+ R+ PS+N TS LS +L G +S+R+ + + H
Sbjct: 211 RQQLRDFCHDRVSHYHAERDKPSLNATSQLSPYLAIGALSVRQCIARVLFATNVHLDA-- 268
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
G W+S+L+WRDFYQ +L+ P + ++F + + W D KK+ + W KG TG
Sbjct: 269 -GREMWISELVWRDFYQHLLHFEPKLCKGRNFVAWTEKVHWSGD---KKHLVAWQKGETG 324
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
YP++D+A+ QLN +G+MHNRLRMV ASFL K++ ++W+ GE YF KL D D A+NNG W
Sbjct: 325 YPIVDAAMRQLNKTGWMHNRLRMVVASFLTKDLHLHWRHGEEYFMQKLVDGDYAANNGGW 384
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QWSAS+GC QP+FRIFNP Q ++FD G F+R ++P+LS + NK+IH PW+ +
Sbjct: 385 QWSASTGCDGQPYFRIFNPTAQGERFDPDGDFVRHWVPELSAVPNKFIHQPWQWEN---- 440
Query: 433 KAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
++ +YPKP+++H ++ L+ + K+
Sbjct: 441 ----VISLSYPKPMVDHKSEREITLRLFQDAKD 469
>gi|448592357|ref|ZP_21651464.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
gi|445731362|gb|ELZ82946.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
Length = 480
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 137/467 (29%), Positives = 244/467 (52%), Gaps = 21/467 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD +L+ + R+ ++ ++ EL + + SDL++ +
Sbjct: 29 VAPLFVFDDAVLEHAGAP------RVRYMLDALAELRASYRGRGSDLLVARGDPRSLVPA 82
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L + V+ N DY A RD+ ++ L G + D +IF I G PY
Sbjct: 83 VAEALGSERVVWNVDYSGLAKERDQAVELALDEAGIDRETVHDAIIFPPGSITTNAGDPY 142
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHS-SKLHKIINNNIISLNDLGFCKSN 181
S+++++ KKW ++ K + + L + S + + ++ +L+DLGF +
Sbjct: 143 SVYTYFWKKWRDRDKPDPFPDPDATDLADAETLESAVSSVENVTVGSLPTLSDLGFDAPD 202
Query: 182 LSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
I G A+ L +F + I Y +R++P+ GTS LS L+FGTI +R+++
Sbjct: 203 ADV--ISAGTEAARARLADFCEDDIYRYADDRDFPARGGTSRLSTDLKFGTIGVREVLAK 260
Query: 241 IFKFIKK--HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ + + + F SQL WR+FY +L+ PNVV++++K+ +I W D
Sbjct: 261 TAAAREGVGGDRDESVEEFQ--SQLAWREFYSHVLWFNPNVVSENYKEYEHDIQWRDD-- 316
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ W G+TGYP++D+ + QL YMHNR+RM+ ASFL K++ +W+ G +F
Sbjct: 317 -PEELAAWKSGHTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCDWRHGYAHFRE 375
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L+D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D +I++Y+P+L + S
Sbjct: 376 YLSDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKQYVPELREASAN 435
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH + S + + + +YP PI++H+ ++ L + +
Sbjct: 436 AIHEWHELSETERNR----VAPDYPDPIVDHADRREMALSMFETARG 478
>gi|451995987|gb|EMD88454.1| hypothetical protein COCHEDRAFT_1142089 [Cochliobolus
heterostrophus C5]
Length = 634
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 157/458 (34%), Positives = 238/458 (51%), Gaps = 35/458 (7%)
Query: 22 IIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHD 77
++ + +F +S+ L L+ L I K +KK +++L N+ V N +
Sbjct: 184 LVSPPKCDFELRSVQLLKQELEELGIPLYIETVHERKNVKKRLVELALEWNVKNVYCNLE 243
Query: 78 YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
YEP + R++ + + + G D + + TGK Y++++ + + W+
Sbjct: 244 YEPDELRREERLVRMMLEKGINMDPQHDDCVVPPGSLKTGTGKQYAVYTPWYRAWV---- 299
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL-----NDLGFCKSNLSSLGIK---- 188
YL ++P LN K I L DL CKS +
Sbjct: 300 ---AYLHAHP--HLLNERSMPEKNPAGFREKFIKLFDSRVPDLPECKSLTGEEKERFHHL 354
Query: 189 --TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
G + A L F+ +K+ Y RN+P++N T +S+H GT++ R V++ + I
Sbjct: 355 WPAGEAAAIDRLERFLTEKVIKYKDTRNFPALNSTGRISVHHAAGTLAARTSVRMA-RDI 413
Query: 246 KKHYKTDC--IGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKN 302
K D G W+ ++ WRDFY+ +L +P V +NK FK EY NI WE Y +
Sbjct: 414 NSVKKLDGGKEGIKGWIGEVAWRDFYRHVLVHWPYVCMNKPFKYEYTNIEWE---YNDAH 470
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYP++D+A+ L +GYMHNRLRM+TASFL K++ ++W+ GE YF L D
Sbjct: 471 FEAWTQGRTGYPIVDAAMRCLKHTGYMHNRLRMITASFLAKHLLLDWRLGEQYFIMHLID 530
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
D ASNNG W +SAS+G QP+FRIFNP QS+KFD QG FIR ++ +L + IH+
Sbjct: 531 GDFASNNGGWGFSASTGVDPQPYFRIFNPWTQSEKFDEQGEFIRLWVKELEGVQGAAIHN 590
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
P++A K E A I YP+PI+EH +++ L RY
Sbjct: 591 PYQA---KGEAAKIAKKNGYPEPIVEHKFARERCLARY 625
>gi|82775975|ref|YP_402322.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
gi|309786366|ref|ZP_07680992.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
gi|81240123|gb|ABB60833.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
gi|308925760|gb|EFP71241.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
Length = 472
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 240/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + IK++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ +Q W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFQNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFLVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P+ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAAEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|91794189|ref|YP_563840.1| deoxyribodipyrimidine photolyase [Shewanella denitrificans OS217]
gi|91716191|gb|ABE56117.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella denitrificans
OS217]
Length = 497
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 148/455 (32%), Positives = 243/455 (53%), Gaps = 35/455 (7%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDY 78
+ +I+FI + + L+ +L L + Y + L++ + I A+ +
Sbjct: 63 VAPMQIDFIRRHLELLARSLGALGIPLDVLYGQVFDDTAALLVDYVNEHQIGAIFAGKEP 122
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E I ++ L G + + +LN +G Y +F+ + KKW + S
Sbjct: 123 E----INEQRRDNALIASGLNLTLLQQDCLLAPGAVLNLSGDMYKVFTPFSKKWKQIAAS 178
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+Q PV + + + I + + F SS + G AK +L
Sbjct: 179 ----MQILPVP-----------VPAPVGSAITQIAPIVFDCPMRSSEAWQAGEGAAKRIL 223
Query: 199 NNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F+ + + Y + R++P+ GTS LS +L G IS ++ V I + +
Sbjct: 224 ERFLNQNVAEYQVLRDFPAEEGTSRLSPYLALGIISPKQCVAAILQRFPEALVDYTSPAK 283
Query: 258 TWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TWL++L+WR+FY+ +L +P + + +F D I W +D K F WC+G TGYPL+
Sbjct: 284 TWLNELMWREFYRHLLVAFPRLSMGHNFNALGDGIKWRND---KAEFNAWCEGRTGYPLV 340
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF +L D DLA+NNG WQWSA
Sbjct: 341 DAAMRQLNQTGWMHNRLRMLVASFLTKHLLIDWRWGEQYFRQQLIDGDLAANNGGWQWSA 400
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
+GC +QP+FR+F+P+ QS KFD FI++++P+LS++SNK IH +++Y+ K +
Sbjct: 401 GTGCDAQPYFRVFSPLSQSAKFDSDCEFIKRFVPELSEVSNKAIHEIKCSAAYEAAKVDL 460
Query: 437 -----ILGKN--YPKPILEHSLSKKNILKRYNFIK 464
+ GK+ YP PI+EHS ++K ++ + +K
Sbjct: 461 FAPPELEGKSATYPAPIVEHSFARKRAIEVLSALK 495
>gi|282897058|ref|ZP_06305060.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
gi|281197710|gb|EFA72604.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
Length = 479
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 160/454 (35%), Positives = 242/454 (53%), Gaps = 31/454 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D NIL Q I RI ++ + L S L+I + + I
Sbjct: 31 VVGVFCLDPNIL----GQDDIAPARITYMIGCLKSLESLYLQAGSQLLILHDNPVRAIPN 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L L AV N D EP A IRD+ + LK G + DQ++ IL+ T P
Sbjct: 87 LAEALEAKAVFWNWDVEPYAQIRDRDVTLALKTRGIETLEKNWDQLLHSPETILSGTRTP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNII----SLNDLGF 177
Y++++ + KKW + K L+ + + NL +++ +I + + + DLGF
Sbjct: 147 YTVYTPFWKKWHSQPK-----LEPIEILANCENL--TAREEEIAEKSGVIKLPTARDLGF 199
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
L ++ G A L +F+ I Y RNYP+I+GTS LS L+FG I IR
Sbjct: 200 IWDG--ELILEPGEVAAWERLTDFLDCAIDEYEEKRNYPAIDGTSLLSPALKFGVIGIRT 257
Query: 237 LVKLIFKFIK-KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + + + + G TW +L WR+FYQ +Y +P + +++ + N W S
Sbjct: 258 IWQKTQELLAISNSQEFSNGIITWQKELAWREFYQHAMYHFPELAEGAYRDVFKNFPW-S 316
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
DN + +F +WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ IN +WGE Y
Sbjct: 317 DN--QDHFQSWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINPQWGEKY 374
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F KL D DL++NNG WQWSASSG +P RIFNP Q++KFD G +IR ++ +L+ +
Sbjct: 375 FMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPSSQAQKFDGDGEYIRHWVGELASV 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
+Y+ + LE+ G+ YP PI++H
Sbjct: 434 DTEYLIG---GNITPLERQGL----GYPPPIVDH 460
>gi|238793873|ref|ZP_04637493.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909]
gi|238726776|gb|EEQ18310.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909]
Length = 485
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 223/406 (54%), Gaps = 32/406 (7%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKEL-------KVIGCKFFSYKDQVIFEKNEILNKTGK 120
+DA+ N YE +RD + L I C F D V+ +L +
Sbjct: 96 QVDALFFNQQYELNEQLRDGALVTRLNHRQGAGHTITCHRFD--DSVLLPPGSVLTGNNE 153
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
Y +F+ +++ +I+++ ++C V + K+ + + L + +
Sbjct: 154 MYKVFTPFRRAFIQRLMMSEC------------RCVPAPKIRDSVAVMPLPLLPFDYPQQ 201
Query: 181 NLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
+ + G A L +F + ++++Y + R+ P++ GTS LS +L G +S R+
Sbjct: 202 PVDNQLFPAGEEAALQRLRSFCREQVQDYQLQRDLPAVAGTSCLSPYLALGVLSPRQCFN 261
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNY 298
+ + G FTWL++LIWR+FY+ +L YP + ++ F D ++W N+
Sbjct: 262 RLLAECPALLENTDGGAFTWLNELIWREFYRHLLVAYPRLCRHRPFIDWTDGVIW---NH 318
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+++ + W +G TGYP++D+A+ QLN +G+MHNRLRM++ASFL+K++ I+W+ GE YF +
Sbjct: 319 SEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDLLIDWRHGERYFMS 378
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
+L D DLA+NNG WQW+AS+G + P+FRIFNP Q ++FD G FIR++LP+L+ + +
Sbjct: 379 QLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDSNGAFIRRWLPELAGVPDS 438
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
IH PW+ + + + +YP P+++H L++ L + K
Sbjct: 439 DIHQPWRWAQRQQQHL------DYPLPLVDHKLARLATLAAFEAAK 478
>gi|451972713|ref|ZP_21925917.1| deoxyribodipyrimidine photolyase family [Vibrio alginolyticus
E0666]
gi|451931406|gb|EMD79096.1| deoxyribodipyrimidine photolyase family [Vibrio alginolyticus
E0666]
Length = 471
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 147/454 (32%), Positives = 242/454 (53%), Gaps = 28/454 (6%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+E++ + L++ + + ++ ++ I + L +VM
Sbjct: 44 MAPMQADLIA--RRLEYLNDELESLNVPFLYKE---VPSFSDCTEVISEWAKTLEATSVM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
N YE D + + L F + D+ + +LNK G+ + +F+ +++ W+
Sbjct: 99 ANIHYEVNERELDAQVSEALASHDIDFELFHDKCVHPPTTVLNKQGEYFKVFTPFKRAWL 158
Query: 134 EKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASG 193
+ + K + + S L ++ I +D F SS +
Sbjct: 159 TQFQMPAV------TKPHEQAPLSSKILEQL--EPIRFSSDFTFSYPRESSEDWFASTND 210
Query: 194 AKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
L F ++ + Y +R++P+I+GTS LS +L G +S R+ + ++ +++ T+
Sbjct: 211 VLKQLREFARERSDAYKEDRDFPAIDGTSQLSPYLAIGALSPRQCIARLYAENQQNDLTE 270
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
G TWLS++IWR+FYQ +L P +V K F D I W +Y ++ F W G T
Sbjct: 271 --GKATWLSEIIWREFYQHLLVFEPKLVKGKGFIDWEDKIQW---SYDEQAFERWKAGAT 325
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
GYP++D+A+ QLN +G+MHNRLRMV ASFL K++ I+W+WGE YF +KL D D A+NNG
Sbjct: 326 GYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKDLHIDWRWGEAYFMSKLVDGDFAANNGG 385
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL 431
WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ + NKYIH PW + L
Sbjct: 386 WQWSASTGCDGQPYFRIFNPISQGEKFDSDGQFVRHWVPEIKSVPNKYIHKPWTWEGFSL 445
Query: 432 EKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
Y KP+++H ++ L+ + K
Sbjct: 446 --------LEYHKPMVDHKTEREITLRLFKSAKE 471
>gi|406025137|ref|YP_006705438.1| deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404432736|emb|CCM10018.1| Deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 476
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 251/467 (53%), Gaps = 47/467 (10%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V +FIFD IL + DRR+ F+ ++ L L+ + L + + + I
Sbjct: 30 KVLPIFIFDTTILKQFPNP---YDRRLSFLAHTLCLLHDALKRLEGSLFVFHGTPLEIIP 86
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
KLV L ++A+ + DYEP I RD+ ++K L C Y D ++ + + ++ +P
Sbjct: 87 KLVNDLKVEAIYADEDYEPANIERDRTLQKAL-APHCTLHLYCDHLLIKPGTMRTQSNQP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN-------- 173
Y +++ Y K + + + Q+ + Y L + ++ I LN
Sbjct: 146 YKVYTAYMKAFRAYIAAQGALAQNRLLIEYNYTLEGRLFIPSALDGRSIDLNVGVEKVLK 205
Query: 174 DLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTI 232
+G+ S K G + L+ F+K ++ +Y NR++ +NGTS +LRFG I
Sbjct: 206 QVGYIYKKDSLWDPKNGVNP----LDGFLKNQVDHYKANRDFLELNGTSRCGPYLRFGLI 261
Query: 233 SIRKLVKLIFKFIKKHYKTDC-----IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKE 287
SIR Y+ C +G TW+++LIWR+FY ILY +PN+++++F+++
Sbjct: 262 SIRSC-----------YRKACALASNVGVTTWINELIWREFYANILYHFPNIIHEAFQEK 310
Query: 288 YDN-ILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMG 346
Y + I W S +++ + G TGYP+ID+A+ QL S G+MHNR RM+ ASF KN+
Sbjct: 311 YRHTIPWNSK---PEDYNRFVHGQTGYPIIDAAVQQLWSEGWMHNRARMIVASFFSKNLL 367
Query: 347 INWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIR 406
++W+ GE++FA L D++LASN G WQWS++ G + P+FR+FNP +Q KKFD G +++
Sbjct: 368 LDWRKGESFFAQHLMDYELASNVGGWQWSSACGVDAPPYFRVFNPYLQGKKFDPDGHYVK 427
Query: 407 KYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSK 453
KYLP L ++ IH+ +YPKP+++++LS+
Sbjct: 428 KYLPSLERVPGHIIHT----------MDFHTFHTDYPKPMVDYTLSR 464
>gi|238756042|ref|ZP_04617366.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
gi|238705767|gb|EEP98160.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
Length = 479
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 227/425 (53%), Gaps = 32/425 (7%)
Query: 43 QNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELK-VIGCKFF 101
Q +D D R+ A K+ +D + NH YE RD ++ L+ + C+
Sbjct: 77 QCHDFDASRRWLAAFSREKQ------VDKLFYNHQYELNERRRDAELEDSLRGQVACQ-- 128
Query: 102 SYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKL 161
Y D ++ +L G Y I++ +++ +I+++ + C Q P +
Sbjct: 129 GYHDSLLLAPGSVLTGNGDMYKIYTPFRRAFIQRLLISDC--QCVPAPRARGEPI----- 181
Query: 162 HKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGT 220
I L + N+ S+ G A L F ++ +++Y+ R+ P+I GT
Sbjct: 182 -----TTIQPLAPFDYPTENVDSVLFPAGEEAALQRLRQFCREPVRDYHQQRDLPAIAGT 236
Query: 221 SYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV 280
S LS +L G +S R+ + + G F+WL++LIWR+FY+ +L YP +
Sbjct: 237 SQLSPYLAIGQLSPRQCFNRLRVECPDMLEQPDSGAFSWLNELIWREFYRHLLVAYPRLC 296
Query: 281 -NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTAS 339
++ F D + W +D + W +G TGYP++D+A+ Q+N++G+MHNRLRM+TAS
Sbjct: 297 QHRPFIGWTDEVRWNTD---AERLQAWQQGMTGYPIVDAAMRQMNATGWMHNRLRMITAS 353
Query: 340 FLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFD 399
FL+K++ ++W+ GE YF +KL D DLA+NNG WQW+AS+G S P+FRIFNP Q ++FD
Sbjct: 354 FLVKDLLVDWRQGERYFMSKLLDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFD 413
Query: 400 YQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKR 459
G+FIR +LP+L+ + IH PW+ + + + +YP P+++H ++ + L
Sbjct: 414 KHGVFIRHWLPELAAVPASDIHQPWRWAQRQQQHL------DYPLPMVDHKQARLDTLAA 467
Query: 460 YNFIK 464
+ +
Sbjct: 468 FEAAR 472
>gi|331651706|ref|ZP_08352725.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M718]
gi|331049984|gb|EGI22042.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M718]
Length = 472
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 239/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS E+ K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|293413984|ref|ZP_06656633.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185]
gi|291434042|gb|EFF07015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185]
Length = 472
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 241/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS E+ K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNSSG+MHNRLRM+TASFL+K++ INW+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSSGWMHNRLRMITASFLVKDLLINWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRNVPGKSVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|170020947|ref|YP_001725901.1| deoxyribodipyrimidine photolyase [Escherichia coli ATCC 8739]
gi|169755875|gb|ACA78574.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 8739]
Length = 472
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 471
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 154/444 (34%), Positives = 245/444 (55%), Gaps = 35/444 (7%)
Query: 34 SIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKEL 93
S+I L +L L++R + I +LV + +++V N YEPQ I RDK IK L
Sbjct: 54 SLIALGKSLNQQGLSLVLRKGSPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLAL 113
Query: 94 KVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLN 153
K S+ ++ E I NK G + +F+ Y K+ C +
Sbjct: 114 VEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQ---------C--------RQIL 156
Query: 154 NLVHSSKLHKIINNNIISLNDLGFCK--------SNLSSLGIKTGASGAKILLNNFI-KK 204
N+ L K I+ +D+G K + S I G GA+ L+ FI
Sbjct: 157 NIPSPFILTKRPRGIEIASDDIGKWKLLPAINWAARFSEYWI-PGEEGAQKKLDEFIVHH 215
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ Y +R++P+ N TS LS HL FG IS +++ + + K + D +LS+L
Sbjct: 216 LSGYKRDRDFPAKNATSRLSPHLHFGEISPWVILRAL-ELAKLEHTCDLASVEHFLSELG 274
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
WR+F +LY +P + ++F+KE+D W++D ++ W KG TGYP+ID+ + +L
Sbjct: 275 WREFSVYLLYHFPKLDCENFRKEFDAFPWQND---EQLLTCWQKGMTGYPIIDAGMRELW 331
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
++GYMHNR+RM+ ASFL K++ I+W+ G +F + L D DLA+N+ +WQW A G + P
Sbjct: 332 ATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAP 391
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNPI+QS+KFD G++IR+++P+L++L+++ IH PW + + + I LGK YPK
Sbjct: 392 YFRIFNPILQSQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDA----DASSIFLGKKYPK 447
Query: 445 PILEHSLSKKNILKRYNFIKNILN 468
PI++H ++ L Y IK ++
Sbjct: 448 PIIDHQEARTKALSYYQQIKKGMD 471
>gi|424761284|ref|ZP_18188866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
R508]
gi|402402268|gb|EJV34989.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
R508]
Length = 477
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 221/400 (55%), Gaps = 28/400 (7%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK-- 188
KW E K PV S KI + + + + + ++ + +K
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAY-REQIARIPLKHY 196
Query: 189 -TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 197 SVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELAS--- 253
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNW 306
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F+ W
Sbjct: 254 ---APSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWAND---PEMFVKW 307
Query: 307 CKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLA 366
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A
Sbjct: 308 QKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAA 367
Query: 367 SNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKA 426
+N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P
Sbjct: 368 NNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLM 427
Query: 427 SSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + + LG+NYPKPI++++ SKK L Y K I
Sbjct: 428 NEALQTQYHVHLGENYPKPIVDYASSKKQALFLYEASKEI 467
>gi|402759704|ref|ZP_10861960.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. NCTC 7422]
Length = 481
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 249/447 (55%), Gaps = 30/447 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI----KKLVIKLNIDAVMINHDYEPQA 82
+IEF + + L L++ L+++ K+I K+L ++ I + N +
Sbjct: 52 KIEFYLRQLQALKQQLEHLHIPLLVQIIPLWKDIPDFLKQLAQRIPIHNIYANIELAVNE 111
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN--K 140
+ RD+ ++K L + + D+ +F I N++ +PY +F ++K ++++ +
Sbjct: 112 LKRDQSVQKFLNQQQKELILFHDRTLFPVASIRNQSNQPYQVFGAFKKTCYQRLQHGLPQ 171
Query: 141 CY---LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
CY +P+ + ++L S L ++ +N I ++ + + + G A +L
Sbjct: 172 CYPAPQTQHPI-ALDDSLFQQSDLQQLHSNYIQQISTTRYTE-------WQVGEQHALML 223
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L+ FI K++ Y R++P++ GTS LS +L G ISIR+ ++ +F+ H++ G
Sbjct: 224 LDQFIDKQLAGYKTARDFPAVAGTSQLSAYLNIGIISIRQCLQALFRQQHGHFEIQSEGQ 283
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TWL +L+WR+FYQ +L+ +P V F+ I W D A K W +G TG P+
Sbjct: 284 QTWLDELLWREFYQHVLFDFPQVSKHLPFQAATKKIRWRDDPIALKK---WQQGQTGIPI 340
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
ID+ + Q+ ++G+MHNR+RM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQW
Sbjct: 341 IDAGMRQMLATGWMHNRVRMICAMFLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWC 400
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FR+FNPI QS+KFD +G +IR+++P+L++L +K IH P+
Sbjct: 401 ASTGTDAVPYFRVFNPITQSQKFDPEGEYIRQWVPELAQLDHKTIHEPYAKHQG------ 454
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNF 462
L NYP+PI++ +S+ ++ +
Sbjct: 455 --LSINYPQPIVDLKMSRLRAIEAFKL 479
>gi|194439253|ref|ZP_03071333.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
gi|253774322|ref|YP_003037153.1| deoxyribodipyrimidine photolyase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160778|ref|YP_003043886.1| deoxyribodipyrimidine photolyase [Escherichia coli B str. REL606]
gi|254287566|ref|YP_003053314.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
BL21(DE3)]
gi|300929490|ref|ZP_07144958.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
gi|387823318|ref|YP_002998501.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli BL21(DE3)]
gi|422785304|ref|ZP_16838043.1| DNA photolyase [Escherichia coli H489]
gi|442599566|ref|ZP_21017284.1| Deoxyribodipyrimidine photolyase [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|194421838|gb|EDX37845.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
gi|253325366|gb|ACT29968.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972679|gb|ACT38350.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli B
str. REL606]
gi|253976873|gb|ACT42543.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
BL21(DE3)]
gi|300462599|gb|EFK26092.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
gi|313848579|emb|CAQ31174.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli BL21(DE3)]
gi|323963088|gb|EGB58658.1| DNA photolyase [Escherichia coli H489]
gi|441651836|emb|CCQ02781.1| Deoxyribodipyrimidine photolyase [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 473
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|424808742|ref|ZP_18234131.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|342323694|gb|EGU19477.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
Length = 469
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 243/447 (54%), Gaps = 33/447 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FI++ + L L + L + + A+ + +L LN + V+ N DYE
Sbjct: 48 QADFIWRRLAALQQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD ++ L G + ++ D+ I + K G+ + +F+ +++ W+ +
Sbjct: 108 QQRDLRTEQLLAEQGILWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSLFQP---- 163
Query: 143 LQSYPVKSYLNNLVHSSKLHKIIN--NNIISLNDLGFCKSNLSSLGIKTGASGAKILLNN 200
PV HS+ + N ++++ D F + + S + L +
Sbjct: 164 ----PVIPR----NHSAAPWDVSNEFSHLVWHTDQIFDYTRVDSSQWPVEFEVIRTQLRD 215
Query: 201 FIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F + ++++Y+ R++P+ GTS LS +L G +S R+ V +++ + G W
Sbjct: 216 FCRERVQDYHQWRDFPAREGTSVLSPYLAIGALSARQCVARLYR--ESAMSALSEGAQVW 273
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
LS+LIWR+FYQ ++ PN+ ++ F + + W +D+ + F WC+G TGYP++D+
Sbjct: 274 LSELIWREFYQHLVAIEPNISKSRDFLEWGARLEWWNDS---EKFQRWCEGNTGYPIVDA 330
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW AS+
Sbjct: 331 AMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y + +
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSVL-- 445
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKN 465
YP P+++H ++ L+ Y K
Sbjct: 446 ---YPAPLVDHKQEREVTLRLYKTAKG 469
>gi|416896200|ref|ZP_11926064.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_7v]
gi|417118550|ref|ZP_11969068.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1.2741]
gi|422800053|ref|ZP_16848551.1| DNA photolyase [Escherichia coli M863]
gi|323967456|gb|EGB62875.1| DNA photolyase [Escherichia coli M863]
gi|327254382|gb|EGE66004.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_7v]
gi|386138084|gb|EIG79244.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1.2741]
Length = 472
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 137/448 (30%), Positives = 239/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAEFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ V + K+ + L + + + A L
Sbjct: 165 G------------VPECVAAPKVRSSVMIEAAPSITLNYPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQSGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI++H ++ L Y +
Sbjct: 444 TL--DYPQPIVDHKEARVRTLAAYEAAR 469
>gi|378776172|ref|YP_005184602.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|364506979|gb|AEW50503.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 472
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 154/444 (34%), Positives = 245/444 (55%), Gaps = 35/444 (7%)
Query: 34 SIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKEL 93
S+I L +L L++R + I +LV + +++V N YEPQ I RDK IK L
Sbjct: 55 SLIALGKSLNQQGLSLVLRKGSPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLAL 114
Query: 94 KVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLN 153
K S+ ++ E I NK G + +F+ Y K+ C +
Sbjct: 115 VEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQ---------C--------RQIL 157
Query: 154 NLVHSSKLHKIINNNIISLNDLGFCK--------SNLSSLGIKTGASGAKILLNNFI-KK 204
N+ L K I+ +D+G K + S I G GA+ L+ FI
Sbjct: 158 NIPSPFILTKRPRGIEIASDDIGKWKLLPAINWAARFSEYWI-PGEEGAQKKLDEFIVHH 216
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ Y +R++P+ N TS LS HL FG IS +++ + + K + D +LS+L
Sbjct: 217 LSGYKRDRDFPAKNATSRLSPHLHFGEISPWVILRAL-ELAKLEHTCDLASVEHFLSELG 275
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
WR+F +LY +P + ++F+KE+D W++D ++ W KG TGYP+ID+ + +L
Sbjct: 276 WREFSVYLLYHFPKLDCENFRKEFDAFPWQND---EQLLTCWQKGMTGYPIIDAGMRELW 332
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
++GYMHNR+RM+ ASFL K++ I+W+ G +F + L D DLA+N+ +WQW A G + P
Sbjct: 333 ATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAP 392
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNPI+QS+KFD G++IR+++P+L++L+++ IH PW + + + I LGK YPK
Sbjct: 393 YFRIFNPILQSQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDA----DASSIFLGKKYPK 448
Query: 445 PILEHSLSKKNILKRYNFIKNILN 468
PI++H ++ L Y IK ++
Sbjct: 449 PIIDHQEARTKALSYYQQIKKGMD 472
>gi|427711391|ref|YP_007060015.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
gi|427375520|gb|AFY59472.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
Length = 486
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 238/463 (51%), Gaps = 28/463 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F FD IL I R+ ++ + +L+ S L+I + I K
Sbjct: 42 VVGLFCFDPKIL----GGEDIAAVRVAYLVGCLEDLAQQYHQAGSQLLILQGEPTTVIPK 97
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L A+ + D EP A RDK + + L G ++ DQ++ I +G Y
Sbjct: 98 LAQALKAQALYWHCDVEPYAQARDKAVAQALAKAGISVQTFWDQLLVAPEAIRTGSGAIY 157
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL---NDLGFCK 179
+++S + K W + K+ Q P L S +L N +I L DLGF
Sbjct: 158 TVYSPFWKNWQQHPKA-----QPVPTLHQAQGLT-SQELDIAQQNGMILLPTTQDLGFTW 211
Query: 180 SNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
L + G A+ L +F ++ I +Y +RN+P I GTS LS L+FG + IR++
Sbjct: 212 DQ--ELVLAPGVPPAQARLEDFCQRAINSYEPDRNFPGIAGTSGLSAALKFGVLGIREIW 269
Query: 239 KLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + + + TW +L WR+FYQ ++Y +P + +++ + N W ++
Sbjct: 270 AASREAQAQARSEESLTAIRTWQQELAWREFYQHVMYAFPELAQGPYRQPFQNFPWSNN- 328
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ +F WC+G TG+P++D+A+ QLN +G+MHNR RM+ ASFL K++ IN +WGENYF
Sbjct: 329 --QDHFQAWCEGKTGFPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLIINPQWGENYFM 386
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+L D DL++NNG WQWSASSG +P RIFNP Q++KFD + +IR +LP+L +
Sbjct: 387 QRLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPHTQAQKFDAEADYIRYWLPELRGVET 445
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+ + LE+ NYP I++H + ++ + Y
Sbjct: 446 ADLLT---GRISPLERQAC----NYPMEIVDHKVQQQKFKQLY 481
>gi|307278038|ref|ZP_07559122.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
gi|306505435|gb|EFM74621.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
Length = 477
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 220/400 (55%), Gaps = 28/400 (7%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK-- 188
KW E K PV S KI + + + + + ++ + +K
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAY-REQIARIPLKHY 196
Query: 189 -TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 197 SVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASM-- 254
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNW 306
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 255 ----PSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFAKW 307
Query: 307 CKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLA 366
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A
Sbjct: 308 QKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAA 367
Query: 367 SNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKA 426
+N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P
Sbjct: 368 NNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLM 427
Query: 427 SSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + + LG+NYPKPI++++ SKK L Y K I
Sbjct: 428 NEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|448546468|ref|ZP_21626632.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548505|ref|ZP_21627724.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557855|ref|ZP_21632841.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702921|gb|ELZ54861.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445713992|gb|ELZ65763.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714263|gb|ELZ66028.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 484
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 136/478 (28%), Positives = 242/478 (50%), Gaps = 37/478 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD+++LD + R+ ++ ++ EL + SDL++ +
Sbjct: 27 VAPLFVFDRDVLDHAGAP------RVRYLLDALSELRDAYRERGSDLLVARGDPRTVVPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ + + + DY A RD ++ L G D + I G Y
Sbjct: 81 VAAAFDAERAVWGIDYSGLARERDADVRLALDEAGVAREPVHDAIFHPPGSITTNAGDTY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYP------------VKSYLNNLVHSSKLHKIINNNII 170
S+++++ KKW ++ K + YP +++ +L + I +
Sbjct: 141 SVYTYFWKKWRDRDKPDP-----YPEPDADDLADAATLETAAESLSDADAEFDIAVGGLP 195
Query: 171 SLNDLGFCKSNLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRF 229
+++DLGF + + S G A+ L+ F I Y +R+YP+ + TS LS L+F
Sbjct: 196 TISDLGFEEPSASVR--SAGTEAARERLSAFCADAIYRYADDRDYPTRDATSRLSTDLKF 253
Query: 230 GTISIRKLVKLIFKFIKK--HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKE 287
GTI IR++ + + + + F SQL WR+FY +L +PNVV +++K+
Sbjct: 254 GTIGIREVYAATAAAREGVGGERDESVEEFQ--SQLAWREFYAHVLREHPNVVTENYKEY 311
Query: 288 YDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGI 347
++I W D+ + W G TGYP++D+ + QL YMHNR+RM+ ASFL K++
Sbjct: 312 ENDIAWRDDD---EELAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLC 368
Query: 348 NWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRK 407
+W+ G +F L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D G +I++
Sbjct: 369 DWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKR 428
Query: 408 YLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
Y+P+LS ++ IH + S + E+ L +YP+PI++H+ ++ + + +
Sbjct: 429 YVPELSDVTANTIHEWHELSDLERER----LAPDYPEPIVDHAERRERAISMFEAARG 482
>gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
Length = 469
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 242/447 (54%), Gaps = 33/447 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FI++ + L L + L + + A+ + +L LN + V+ N DYE
Sbjct: 48 QADFIWRRLAALQQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD ++ L G + ++ D+ I + K G+ + +F+ +++ W+ +
Sbjct: 108 QQRDLRTEQLLAEQGISWSAFDDKCILPPGSLRTKQGEFFKVFTPFKRAWLSLFQP---- 163
Query: 143 LQSYPVKSYLNNLVHSSKLHKIIN--NNIISLNDLGFCKSNLSSLGIKTGASGAKILLNN 200
PV HS+ + N ++++ D F + S + L +
Sbjct: 164 ----PVIPR----NHSAAPWNVPNEFSHLVWNTDQMFNYPRVDSSQWPVEFEVIRTQLRD 215
Query: 201 FIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F + ++++Y+ R++P+ GTS LS +L G +S R+ V +++ + G W
Sbjct: 216 FCRERVQDYHQWRDFPAREGTSILSPYLAIGALSARQCVARLYR--ESEMSALSEGAQVW 273
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
LS+LIWR+FYQ ++ PN+ ++ F + + W +D+ + F WC+G TGYP++D+
Sbjct: 274 LSELIWREFYQHLVAIEPNISKSRDFLEWGARLEWWNDS---EKFQRWCEGNTGYPIVDA 330
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW AS+
Sbjct: 331 AMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y + +
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSVL-- 445
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKN 465
YP P+++H ++ L+ Y K
Sbjct: 446 ---YPPPLVDHKQEREVTLRLYKTAKG 469
>gi|255975817|ref|ZP_05426403.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
gi|255968689|gb|EET99311.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
Length = 473
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 220/400 (55%), Gaps = 28/400 (7%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 88 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 147
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK-- 188
KW E K PV S KI + + + + + ++ + +K
Sbjct: 148 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAY-REQIARIPLKHY 192
Query: 189 -TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 193 SVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASM-- 250
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNW 306
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 251 ----PSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFAKW 303
Query: 307 CKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLA 366
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A
Sbjct: 304 QKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAA 363
Query: 367 SNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKA 426
+N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P
Sbjct: 364 NNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLM 423
Query: 427 SSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + + LG+NYPKPI++++ SKK L Y K I
Sbjct: 424 NEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 463
>gi|312903342|ref|ZP_07762522.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
gi|422689333|ref|ZP_16747445.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630]
gi|310633218|gb|EFQ16501.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
gi|315577672|gb|EFU89863.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630]
Length = 477
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 220/400 (55%), Gaps = 28/400 (7%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK-- 188
KW E K PV S KI + + + + + ++ + +K
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAY-REQIARIPLKHY 196
Query: 189 -TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 197 SVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASM-- 254
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNW 306
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 255 ----PSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFAKW 307
Query: 307 CKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLA 366
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A
Sbjct: 308 QKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAA 367
Query: 367 SNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKA 426
+N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P
Sbjct: 368 NNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIM 427
Query: 427 SSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + + LG+NYPKPI++++ SKK L Y K I
Sbjct: 428 NEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|429886347|ref|ZP_19367906.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
gi|429226676|gb|EKY32756.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
Length = 469
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 237/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQFLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWDVPSALAELVWHPEQ---------------AFDYPRIDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ + G
Sbjct: 213 LRDFCRERVQDYHQTRDFPAQEGTSSLSPYLAIGVLSARQCVARLYH--ESSMGEISEGA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFLIK++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLIKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
Length = 469
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 236/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G +F++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQFLSEQGITWFAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWNVPSALAELVWHPEQT---------------FDYPRVDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRDFCRERVQDYHQARDFPAQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPA------- 440
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
I YP +++H ++ L+ Y K
Sbjct: 441 -INSVLYPARLVDHKQEREVTLRLYKTAKG 469
>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
Length = 489
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/478 (28%), Positives = 236/478 (49%), Gaps = 42/478 (8%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+ D + R G ++ S+ LS +L S L++R A I +
Sbjct: 32 VVPVFVLDDDTPGGWRPGGASR----WWLHHSLASLSRSLATAGSPLVLRRGRADVAIGE 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
LV + V+ N YEP A RD +K +L+ G + S+ ++ E + G+PY
Sbjct: 88 LVRETGAGTVLWNRCYEPWATERDSRLKADLRAAGVEVKSFNGSLLREPMTVRTAAGEPY 147
Query: 123 SIFSFYQKK------WIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
+F+ + + W E + + L++ P + L S L + L
Sbjct: 148 RVFTPFWRAVSSSPDWPEPLAAPD-RLEAPPTAPASDPL-ESWGLLPTTPDWAGGLRQ-- 203
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
+ G + L F++ +Y R+ P +GTS LS +L FG IS R
Sbjct: 204 ---------AWQPGEAAVAARLRAFLEGAAADYAEGRDRPGSDGTSRLSPYLHFGEISPR 254
Query: 236 KLVKLIFKFI--------KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKE 287
++ + ++H ++ +L +L WR+F +LY +P + +
Sbjct: 255 QVWAATRDAMLSGNPPEHRRHAES-------FLRELGWREFCYNLLYHFPKLPERPLNPR 307
Query: 288 YDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGI 347
+++ W+ D+ A +W +G TGYP++D+ + QL ++G+MHNR+RM+ SFL+K++ +
Sbjct: 308 FEDFPWQPDSAA---LDSWQRGRTGYPIVDAGMRQLWTTGWMHNRVRMIVGSFLVKHLLL 364
Query: 348 NWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRK 407
W+ G+ +F + L D DLA+N WQW A G + P+FR+FNP++Q KFD G ++R+
Sbjct: 365 PWQEGQRWFWDTLVDADLANNAAGWQWIAGCGADAAPYFRVFNPVLQGGKFDPDGRYVRR 424
Query: 408 YLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
++P+L+ L + IH PW A++ L +AGI LG +YP P +EH + L + ++
Sbjct: 425 WVPELAALPDTLIHQPWTATAETLRRAGIRLGTDYPAPCIEHKRGRDRALAAFATLRQ 482
>gi|354611090|ref|ZP_09029046.1| Deoxyribodipyrimidine photo-lyase [Halobacterium sp. DL1]
gi|353195910|gb|EHB61412.1| Deoxyribodipyrimidine photo-lyase [Halobacterium sp. DL1]
Length = 467
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 226/467 (48%), Gaps = 33/467 (7%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF FD +LD R+ F+ ++ L + DL++R+ S + L
Sbjct: 30 VFCFDDAVLDHAAPS------RMAFMLDALAALRERYRELGGDLLVRHGDPSAVLPDLAR 83
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
+ D V+ NHDY A RD+ ++ L G D V+ E I G PYS++
Sbjct: 84 EFGADRVVWNHDYSGLARERDEAVRAALDDQGTAHEQVHDAVLHEPGAIRTNAGDPYSVY 143
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSL 185
+++ KKW ++ K++ P + V + + + LGF + +
Sbjct: 144 TYFWKKWRDREKAD-------PAPEPEPDAVAD-----VTGDELPDAATLGFEEPDAEIP 191
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
G A+ L F ++ + Y R+YP+ TS LS L+FGT+ +R+L + +
Sbjct: 192 A--AGTDAARERLEAFCERDVFRYEDARDYPAERATSRLSADLKFGTLGVRELYERTEQA 249
Query: 245 IKKHYKTD---CIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ D + F QL WR+FY +LY P VV ++FK+ I W D
Sbjct: 250 MTDADDDDERASVEEFQ--GQLAWREFYAQVLYFNPEVVTENFKEYAQPIEWRDD---PT 304
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
W G TGYP++D+ + QL Y+HNR+RM+ A+FL K++ ++W+ G +F L
Sbjct: 305 ELRAWKDGETGYPIVDAGMRQLRDEAYVHNRVRMLVAAFLTKDLLVDWREGYAHFREHLV 364
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D D A++ G WQW+AS+G +QP+FR+FNP Q +++D F+++Y+P+L + IH
Sbjct: 365 DHDTANDTGGWQWAASTGTDAQPYFRVFNPTTQGERYDPDAEFVKRYVPELRDVPPAKIH 424
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILN 468
+ W S + L +YP PI++H+ ++ + + + +
Sbjct: 425 A-WPDLSPEERDE---LAPDYPAPIVDHAERREEAIATFERARGDAD 467
>gi|449145685|ref|ZP_21776486.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
gi|449078633|gb|EMB49566.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
Length = 469
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 242/447 (54%), Gaps = 33/447 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FI++ + L L + L + + A+ + +L LN + V+ N DYE
Sbjct: 48 QADFIWRRLSALQQELAAINIPLFYQQVADFREAAHAVNQLAKALNANQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD ++ L G + ++ D+ I + K G+ + +F+ +++ W+ +
Sbjct: 108 QQRDLRTEQFLAEQGISWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSLFQP---- 163
Query: 143 LQSYPVKSYLNNLVHSSKLHKIIN--NNIISLNDLGFCKSNLSSLGIKTGASGAKILLNN 200
PV HS+ + N ++++ D F + S + L +
Sbjct: 164 ----PVIPR----NHSAAPWDVPNEFSHLVWNTDQVFNYPRVDSSQWPVEFEVIRTQLRD 215
Query: 201 FIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F + ++++Y+ R++P+ GTS LS +L G +S R+ V +++ + G W
Sbjct: 216 FCRERVQDYHQWRDFPAREGTSVLSPYLAIGALSARQCVARLYR--ESAMSALSEGAQVW 273
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
LS+LIWR+FYQ ++ PN+ ++ F + + W +D+ + F WC+G TGYP++D+
Sbjct: 274 LSELIWREFYQHLVAIEPNISKSRDFLEWGARLEWWNDS---EKFQRWCEGQTGYPIVDA 330
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW AS+
Sbjct: 331 AMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y + +
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSVL-- 445
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKN 465
YP P+++H ++ L+ Y K
Sbjct: 446 ---YPAPLVDHKQEREVTLRLYKTAKG 469
>gi|388599361|ref|ZP_10157757.1| deoxyribodipyrimidine photolyase [Vibrio campbellii DS40M4]
Length = 471
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/456 (33%), Positives = 241/456 (52%), Gaps = 42/456 (9%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVM 73
+ P+++ I RR+ + + + +L+I L ++ +++ + IK + LN +VM
Sbjct: 44 MAPMQADLIA--RRLVHLDEELADLNIPLLYKEAP---KFSDVTGVIKDWALSLNAKSVM 98
Query: 74 INHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI 133
N YE D+ + L F ++ D+ + +LNK G+ + +F+ +++ W+
Sbjct: 99 ANIHYEVNEQALDREVADVLAKSQVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWL 158
Query: 134 EKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL-------NDLGFCKSNLSSLG 186
K + +V K I +I D+ F SS
Sbjct: 159 LK---------------FQMPMVSKPKPQVEIPQEVIQPLEADRYHADVPFTYPRESSDQ 203
Query: 187 IKTGASGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
L F ++ + Y R+ PS++GTS LS +L G +S R+ + ++
Sbjct: 204 WYDSTIDIVHHLREFARERSDAYQEKRDLPSVDGTSQLSPYLAIGALSPRQCIARLYAEN 263
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFL 304
TD G TWLS++IWR+FYQ +L P +V K F D I W D A F
Sbjct: 264 PHTDLTD--GKATWLSEIIWREFYQHLLVFEPKLVKGKGFIPWEDKIEWSYDEAA---FE 318
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W G TGYP++D+A+ QLN++G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D
Sbjct: 319 RWKTGTTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTKDLHIDWRWGEAYFMSKLVDGD 378
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
A+NNG WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ ++ NK+IH+PW
Sbjct: 379 FAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGAFVRYWVPEIKQVPNKFIHNPW 438
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
S + L +Y KP+++H + ++ L+ +
Sbjct: 439 LWSGFNL--------LDYHKPMVDHKVEREITLRLF 466
>gi|417595633|ref|ZP_12246296.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3030-1]
gi|345359953|gb|EGW92126.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3030-1]
Length = 472
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|427738511|ref|YP_007058055.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
gi|427373552|gb|AFY57508.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
Length = 482
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 242/470 (51%), Gaps = 31/470 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D NIL + R+ ++ + +L S L+I + I K
Sbjct: 31 VVGVFCLDPNILKGDDVAAV----RVTYMIGCLQKLQERYAQMGSQLLILWDNPVVAIAK 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L LN AV N D EP + RD + L+ G ++ DQ++ EI + KP
Sbjct: 87 LAKALNSKAVFWNWDVEPYSQQRDADVIDALQEQGIEYLEKNWDQILKTPEEIRTGSDKP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVK--SYLNNLVHSSKLHKIINNNI--ISLNDLGF 177
Y++++ + K WI K K + PVK L K I + + DLGF
Sbjct: 147 YTVYTPFWKNWISKPKDS-------PVKIADKFEGLTAEEKEAAIKAGTVELPTAKDLGF 199
Query: 178 CKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
L I+ G AK L F I Y RN+P+I+GTS LS L+FG I IR
Sbjct: 200 HWDG--ELIIEPGEEAAKDRLEEFCYSNINEYQEQRNFPAIDGTSRLSAALKFGVIGIRT 257
Query: 237 LVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + ++ + TW ++ WR+FYQ +Y +P + + +++ + N WE
Sbjct: 258 VWEATEEALENSRSDELENNIRTWQKEIAWREFYQHAMYHFPELASGAYRDAFKNFPWED 317
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
++ ++F WC+G TGYP++D+A+ QLN G+MHNR RM+ ASFL K++ +N + GE Y
Sbjct: 318 ND---EHFQAWCEGKTGYPIVDAAMRQLNQIGWMHNRCRMIVASFLTKDLLLNPQLGEKY 374
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F +L D DL++NNG WQWSASSG +P RIFNP Q++KFD +G +IR+++P+LS +
Sbjct: 375 FMQRLIDGDLSANNGGWQWSASSGMDPKP-VRIFNPASQAQKFDAEGEYIRQWVPELSSM 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+Y+ + LE+ + YP+PI+EH ++ + Y K+
Sbjct: 434 DAEYLVT---GKITPLERQAV----GYPEPIVEHKKQQRAFKEMYKTQKD 476
>gi|169595566|ref|XP_001791207.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15]
gi|111070898|gb|EAT92018.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15]
Length = 632
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 153/447 (34%), Positives = 236/447 (52%), Gaps = 25/447 (5%)
Query: 24 EDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAI 83
E R +E + K + EL I L + + + +K + +L + N+ + N +YEP +
Sbjct: 192 ELRSVELMKKELDELDIPLH---IETVPKRRNVAKRLLELAQEWNVKNIFCNLEYEPDEL 248
Query: 84 IRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYL 143
R+ + + + G F D + + GK Y+++S + + W+ + ++ L
Sbjct: 249 RREARLVELMLENGIGFNPQHDDCVVPPGALKTGGGKQYAVYSPWFRSWVAHLHAHPHLL 308
Query: 144 QSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK------TGASGAKIL 197
P+ NL + H + + I DL KS + G + A
Sbjct: 309 NERPMPE--RNLAGFREKHAGLFDAKIP--DLPESKSLTDEEKTRFHALWPAGEAAAIDR 364
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF-IKKHYKTDCIG 255
L F +KI Y RN+P++N T +S H GT++ R V++ K G
Sbjct: 365 LERFASEKIGRYQATRNFPALNSTGRVSAHHAAGTLAARTSVRMARSANTSKKLDGGSDG 424
Query: 256 YFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314
TW+S++ WRDFY+ +L +P V +NK FK EY NI WE Y +F W +G TGYP
Sbjct: 425 IKTWISEVAWRDFYRHVLVHWPYVCMNKPFKFEYTNIEWE---YNDAHFTAWKEGRTGYP 481
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
++D+A+ L + YMHNR RM+TASFL K++ ++W+ GE YF L D D ASNNG W +
Sbjct: 482 IVDAAMRCLKHTAYMHNRNRMITASFLAKHLLLDWRLGEQYFMTHLIDGDFASNNGGWGF 541
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
SAS+G QP+FRIFNP +QS+KFD +G FIR ++ +LS + K +H+P Y +KA
Sbjct: 542 SASTGVDPQPYFRIFNPWLQSEKFDEEGDFIRLWVEELSGVQGKAVHNP-----YADKKA 596
Query: 435 GIILGKN-YPKPILEHSLSKKNILKRY 460
+ KN YPKP++EH +++ L RY
Sbjct: 597 AEVARKNGYPKPVVEHKFARERCLARY 623
>gi|331682139|ref|ZP_08382761.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H299]
gi|331080563|gb|EGI51739.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H299]
Length = 472
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/445 (32%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ +Q W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTDNHEMYKVFTPFQNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGM 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|432673671|ref|ZP_19909166.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE142]
gi|431218003|gb|ELF15489.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE142]
Length = 472
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|388257421|ref|ZP_10134600.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
gi|387938588|gb|EIK45140.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
Length = 469
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 222/403 (55%), Gaps = 26/403 (6%)
Query: 57 SKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN 116
+ E+ +L +N N +Y + RD + L+ G D+ I + N
Sbjct: 79 APELLRLAQSVNGSHCFFNAEYPVNELNRDMAANQLLREQGIAVKRCHDRCIVPPGMVRN 138
Query: 117 KTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
G+PY +F+ ++KKW++ V + P L++++ + I + + S +DL
Sbjct: 139 GQGEPYKVFTAFKKKWLQTVMPLSLTPLALPQSQTLDSVIKACSPDAI--DQLFSGHDL- 195
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
+LS+L G A L++FI + Y R+YP+I GTS LS + G++S R
Sbjct: 196 ---RDLSAL-WPAGEQEAYRRLDDFIANGLTQYLDQRDYPAIEGTSTLSPYFAVGSLSPR 251
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWE 294
+ + + + + + G W+S+LIWR+FYQ ++ YP V K+ + + W+
Sbjct: 252 QALSAVLAYTYGDWSGNA-GAACWISELIWREFYQHVVVDYPQVCKRKAMQAHTEAFPWQ 310
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
D F WCKG TG P++D+A+ QLN++G+MHNRLRMV A FL KN I+W+WGE
Sbjct: 311 KDTAL---FEAWCKGMTGIPIVDAAMRQLNATGWMHNRLRMVVAMFLTKNCQIDWRWGEQ 367
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF ++L D D A+NNG WQWSAS+G + P+FRIFNP QS++FD +G FIRK++ +++
Sbjct: 368 YFMSQLIDGDFAANNGGWQWSASTGTDAAPYFRIFNPCSQSERFDPKGDFIRKWVSEVAH 427
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
LS K IH+P +I YP+PI++ S S+K +
Sbjct: 428 LSAKEIHNP----------PPLI---KYPRPIVDLSESRKATI 457
>gi|193070647|ref|ZP_03051584.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
gi|260866839|ref|YP_003233241.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O111:H- str. 11128]
gi|300906963|ref|ZP_07124633.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
gi|301305193|ref|ZP_07211291.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
gi|415818897|ref|ZP_11508513.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1180]
gi|415860594|ref|ZP_11534309.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1]
gi|417193165|ref|ZP_12015012.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0522]
gi|417219176|ref|ZP_12024018.1| deoxyribodipyrimidine photo-lyase [Escherichia coli JB1-95]
gi|417590394|ref|ZP_12241111.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2534-86]
gi|417606816|ref|ZP_12257340.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_DG131-3]
gi|417638029|ref|ZP_12288197.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TX1999]
gi|419168695|ref|ZP_13713089.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7A]
gi|419179678|ref|ZP_13723301.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7C]
gi|419185236|ref|ZP_13728758.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7D]
gi|419190689|ref|ZP_13734155.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7E]
gi|419195815|ref|ZP_13739220.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC8A]
gi|419201869|ref|ZP_13745094.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8B]
gi|419219971|ref|ZP_13762924.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8E]
gi|419368973|ref|ZP_13910101.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC14A]
gi|419805391|ref|ZP_14330528.1| FAD binding domain of DNA photolyase [Escherichia coli AI27]
gi|419866126|ref|ZP_14388497.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H25 str.
CVM9340]
gi|419889567|ref|ZP_14409952.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9570]
gi|419896132|ref|ZP_14415872.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9574]
gi|419928868|ref|ZP_14446573.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-1]
gi|420090248|ref|ZP_14602021.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9602]
gi|420096405|ref|ZP_14607796.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9634]
gi|420384331|ref|ZP_14883717.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa12]
gi|424771442|ref|ZP_18198585.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|427803769|ref|ZP_18970836.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli chi7122]
gi|427808359|ref|ZP_18975424.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli]
gi|433129063|ref|ZP_20314533.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE163]
gi|433133877|ref|ZP_20319252.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE166]
gi|443616732|ref|YP_007380588.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O78]
gi|192956035|gb|EDV86501.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
gi|257763195|dbj|BAI34690.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O111:H- str. 11128]
gi|300401266|gb|EFJ84804.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
gi|300839505|gb|EFK67265.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
gi|315257624|gb|EFU37592.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1]
gi|323180055|gb|EFZ65611.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1180]
gi|345344925|gb|EGW77284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2534-86]
gi|345364221|gb|EGW96347.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_DG131-3]
gi|345395156|gb|EGX24907.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TX1999]
gi|378017913|gb|EHV80780.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7A]
gi|378026863|gb|EHV89495.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7C]
gi|378032654|gb|EHV95235.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7D]
gi|378040752|gb|EHW03215.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7E]
gi|378052010|gb|EHW14321.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC8A]
gi|378056269|gb|EHW18516.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8B]
gi|378071823|gb|EHW33890.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8E]
gi|378221634|gb|EHX81879.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC14A]
gi|384471571|gb|EIE55645.1| FAD binding domain of DNA photolyase [Escherichia coli AI27]
gi|386190346|gb|EIH79094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0522]
gi|386192938|gb|EIH87246.1| deoxyribodipyrimidine photo-lyase [Escherichia coli JB1-95]
gi|388336307|gb|EIL02854.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H25 str.
CVM9340]
gi|388357206|gb|EIL21798.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9570]
gi|388358887|gb|EIL23271.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9574]
gi|388404913|gb|EIL65356.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-1]
gi|391309167|gb|EIQ66844.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa12]
gi|394386486|gb|EJE63986.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9602]
gi|394389156|gb|EJE66347.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9634]
gi|412961951|emb|CCK45864.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli chi7122]
gi|412968538|emb|CCJ43163.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli]
gi|421940301|gb|EKT97775.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|431651007|gb|ELJ18312.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE163]
gi|431662120|gb|ELJ28905.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE166]
gi|443421240|gb|AGC86144.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O78]
Length = 472
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|257082516|ref|ZP_05576877.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
gi|256990546|gb|EEU77848.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
Length = 477
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 221/400 (55%), Gaps = 28/400 (7%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK-- 188
KW E K PV S KI + + + + + ++ + +K
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYGE-QIARIPLKHY 196
Query: 189 -TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 197 SVGEKTARRCLNTFINQKLRSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASV-- 254
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNW 306
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F+ W
Sbjct: 255 ----PSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND---PEMFVKW 307
Query: 307 CKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLA 366
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A
Sbjct: 308 QKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAA 367
Query: 367 SNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKA 426
+N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P
Sbjct: 368 NNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLM 427
Query: 427 SSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + + LG+NYPKPI++++ SKK L Y K I
Sbjct: 428 NEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|422699183|ref|ZP_16757056.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1346]
gi|315172271|gb|EFU16288.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1346]
Length = 477
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 220/400 (55%), Gaps = 28/400 (7%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK-- 188
KW E K PV S KI + + + + + ++ + +K
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAY-REQIARIPLKHY 196
Query: 189 -TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 197 SVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASV-- 254
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNW 306
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 255 ----PSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFAKW 307
Query: 307 CKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLA 366
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A
Sbjct: 308 QKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAA 367
Query: 367 SNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKA 426
+N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P
Sbjct: 368 NNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLM 427
Query: 427 SSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + + LG+NYPKPI++++ SKK L Y K I
Sbjct: 428 NEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|257419331|ref|ZP_05596325.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
gi|257161159|gb|EEU91119.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
Length = 477
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 218/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSRYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASV--- 254
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F+ W
Sbjct: 255 ---PSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND---PEMFVKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|88705106|ref|ZP_01102818.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
gi|88700801|gb|EAQ97908.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
Length = 482
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 131/439 (29%), Positives = 241/439 (54%), Gaps = 19/439 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L+ ++++ LI R + + + + + AV + YEP A +K++
Sbjct: 54 WLHHSLSALARDIEDQGGKLIFRRGKSREVLGDICKSTDATAVYCSRRYEPWASEEEKML 113
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
++L F Y ++ E ++ ++G PY +F+ + + +E ++ +
Sbjct: 114 HEDLGNSDIDFKRYGGTLLHEPGNVMTQSGGPYKVFTPFWRACLELDRAEPVPVPDVTWS 173
Query: 150 SYL-NNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKN 207
++ ++ + +L N S + G GA+ L++F+++ +
Sbjct: 174 TFTKSDALDDWQLRPTSPNWAASWEEY-----------WTPGEDGAQQRLHDFLEESVSR 222
Query: 208 YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF-KFIKKHYKTDCIGYFTWLSQLIWR 266
Y R++P+ +S LS HL G +S R++ + K ++ I F +++ WR
Sbjct: 223 YADERDFPAEEVSSRLSPHLHHGELSPRQVWAMCEQKKLETPASEKAIKKFQ--AEIGWR 280
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
+F +L+ +P + K+FK+ + + W+ D K W +G TGYP++D+ + +L ++
Sbjct: 281 EFSYHLLHFFPEIPEKAFKENFADFPWQPD---KTRLERWQQGQTGYPIVDAGMRELWAT 337
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
G MHNR+RMV ASFL K++ +W+ GE++F + L D D+ASN +WQW A SG + P+F
Sbjct: 338 GTMHNRIRMVVASFLCKHLLQHWRSGEDWFWDTLVDADMASNGCSWQWVAGSGADAAPYF 397
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
RIFNPI Q +KFD G ++R+++P++++L NKY+H PW+AS LE+AGI LG +YP+PI
Sbjct: 398 RIFNPITQGEKFDKHGDYVRQWVPEIARLPNKYLHKPWEASKEALEEAGIKLGSDYPEPI 457
Query: 447 LEHSLSKKNILKRYNFIKN 465
++H +++ L Y IK
Sbjct: 458 VDHKEARQAALDAYEDIKG 476
>gi|433639824|ref|YP_007285584.1| deoxyribodipyrimidine photolyase [Halovivax ruber XH-70]
gi|433291628|gb|AGB17451.1| deoxyribodipyrimidine photolyase [Halovivax ruber XH-70]
Length = 467
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/465 (29%), Positives = 231/465 (49%), Gaps = 26/465 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
E VF+FD ++L G R+ F+ ++ L ++ +SDL++ + ++ I
Sbjct: 25 EALPVFVFDPDVL----KDGSPP--RVAFMLDALARLRARYRDLESDLVVAWGDPAEAIP 78
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+LV + D V+ N DY + RD+ +++ + G D V E I GKP
Sbjct: 79 ELVAEYGADGVVWNEDYTGLSRARDERVQEAITDAGGDVERVHDAVCHEPGAITTSDGKP 138
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y++FS+Y KW+++ K P L + + + + SL DLGF +
Sbjct: 139 YAVFSYYGTKWLDREKDEPV---PEPDAGSLATV-------EPADEALPSLRDLGFAEPA 188
Query: 182 LSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
TG A+ L F I Y R+ + T+ +S L FGTI IR++ +
Sbjct: 189 AEIPPAGTGP--ARDRLETFCAGDIYEYAEKRDDLADEATARISQDLAFGTIGIREVHER 246
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + + + QL WR+FY +L+ P V +S ++ ++I W +D +
Sbjct: 247 VEATLDGADEGQAASVEAFRRQLAWREFYTQVLWANPENVTRSHREFPNDIDWRND---E 303
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
F W +G TG+P++D+ + QL Y+HNR R++ SFL K++ +W+ G +F L
Sbjct: 304 AEFDAWREGRTGFPVVDAGMRQLREEAYVHNRARLIVGSFLTKDLLCDWRRGYEHFRATL 363
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D D ASNNGNWQW AS+G +QP+FR+FNP+ Q + D +IR+Y+P+L + + I
Sbjct: 364 VDHDTASNNGNWQWVASTGTDAQPYFRVFNPMKQGRDHDPDAEYIRRYVPELEGVDAETI 423
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
HS W E+A + +YP PI++H+ ++ + + +
Sbjct: 424 HS-WHELDPD-ERAEV--APDYPAPIVDHASRREEAISTFERARG 464
>gi|87300679|ref|ZP_01083521.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
gi|87284550|gb|EAQ76502.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
Length = 499
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/472 (30%), Positives = 229/472 (48%), Gaps = 46/472 (9%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD +LD + R+ F+ +S+ EL + S L++ ++ + +
Sbjct: 32 VTGVFVFDPALLD----APDLSPARLWFLSESLRELQGRWREAGSRLLLLRGDPAEVLPQ 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L V N D EP RD+ + + L+ GCK + DQ++ + + G PY
Sbjct: 88 LAQAAGAQVVAWNRDVEPDGRARDRRVAEALRAGGCKLLADWDQLLVPPDALATGAGDPY 147
Query: 123 SIFSFYQKKW---IEKVKSNKCYLQSYPVK-----------------SYLNNLVHSSKLH 162
++ + + W IE+ + C + P LN L
Sbjct: 148 RVYGPFFRSWRRRIEQAGAEACAPVAAPASLIDLDPAALPAERRRLWDQLNWLETVPTPG 207
Query: 163 KIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSY 222
+ + DL C+ ++ + A LL Y RN P+ GTS
Sbjct: 208 DGLPGAPFAGADLCPCRPGEAAAAAQLAAFADGPLLG--------YEPGRNLPAEPGTSG 259
Query: 223 LSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT-WLSQLIWRDFYQMILYCYPNVVN 281
LS LRFGT+S R+ + + + + T W +L WR+FYQ L+ +P +
Sbjct: 260 LSAALRFGTLSPRQAWAAAQQQRPRARSEEELQSITVWEQELAWREFYQQALFHFPELAE 319
Query: 282 KSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFL 341
++ ++ + WE+D + F WC G TG P++D+A+ QLN SG+MHNR RM+ ASFL
Sbjct: 320 GPYRPQWRHFPWEND---EGRFAAWCDGLTGVPIVDAAMRQLNDSGWMHNRCRMIVASFL 376
Query: 342 IKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQ 401
+K++ ++W+WGE F L D DLA+NNG WQWSASSG +P RIFNP Q+ +FD +
Sbjct: 377 VKDLIVDWRWGERQFMRLLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQAARFDPE 435
Query: 402 GIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSK 453
+IR++LP+LS+++ + + LE+ G YP PI++H L +
Sbjct: 436 ATYIRRWLPELSRVATADLI---RGEIAPLERRG------YPGPIVDHKLQQ 478
>gi|282899861|ref|ZP_06307822.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
gi|281195131|gb|EFA70067.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
Length = 484
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 158/454 (34%), Positives = 240/454 (52%), Gaps = 31/454 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D NIL Q I RI ++ + L S L+I + + I
Sbjct: 36 VVGVFCLDPNIL----GQDDIAPARITYMIGCLKSLESLYSQAGSQLLILHDNPVRAIPN 91
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L L AV N D EP A IRD+ + LK G + DQ++ + IL+ G P
Sbjct: 92 LAEALEAKAVFWNWDVEPYAQIRDRDVTLALKTRGIETLEKNWDQLLHSPDTILSGAGTP 151
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNII----SLNDLGF 177
Y++++ + KKW + K P++ N +++ +I + + + DLGF
Sbjct: 152 YTVYTPFWKKWHSQPKVE-------PIEILANCENLTAREEEIAEKSGVIKLPTARDLGF 204
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
S L ++ G A L +F+ I Y RNYP+I+GTS LS L+FG I IR
Sbjct: 205 IWSG--ELILEPGEVAAWERLTDFLDCAIDEYEEKRNYPAIDGTSLLSPALKFGVIGIRT 262
Query: 237 LVKLIFKFIK-KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + + + + G TW +L WR+FYQ +Y +P + +++ + N W S
Sbjct: 263 IWQKTQELLAISNSQEFSNGIITWQKELAWREFYQHAMYHFPELAEGAYRDVFKNFPW-S 321
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
DN +++F WC+G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ IN +WGE Y
Sbjct: 322 DN--QEHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINPQWGEKY 379
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F KL D DL++NNG WQWSASSG +P RIFNP Q++KFD G +IR ++ +L+ +
Sbjct: 380 FMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPSSQAQKFDSDGEYIRHWVGELASV 438
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
+Y+ + LE+ + YP I++H
Sbjct: 439 ETEYLIG---GNITPLERQSV----GYPTSIVDH 465
>gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|360038062|ref|YP_004939824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|379743509|ref|YP_005334561.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|417812104|ref|ZP_12458765.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|417816596|ref|ZP_12463226.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|418329963|ref|ZP_12940997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|418337496|ref|ZP_12946391.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|418339492|ref|ZP_12948380.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|418349168|ref|ZP_12953900.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|418353785|ref|ZP_12956510.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|419824099|ref|ZP_14347628.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|421316788|ref|ZP_15767358.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|421319836|ref|ZP_15770394.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|421323878|ref|ZP_15774405.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|421326850|ref|ZP_15777368.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|421331937|ref|ZP_15782416.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|421335570|ref|ZP_15786033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|421341106|ref|ZP_15791536.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|421346109|ref|ZP_15796493.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|422885232|ref|ZP_16931672.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|422897943|ref|ZP_16935363.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|422904100|ref|ZP_16939052.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|422915375|ref|ZP_16949824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|422926998|ref|ZP_16960003.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|423146338|ref|ZP_17133906.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|423148099|ref|ZP_17135477.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|423151885|ref|ZP_17139116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|423158508|ref|ZP_17145521.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|423162314|ref|ZP_17149186.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|423162508|ref|ZP_17149374.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|423732330|ref|ZP_17705627.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|423736965|ref|ZP_17710078.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|423900591|ref|ZP_17727949.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|423912133|ref|ZP_17728649.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|423999959|ref|ZP_17743116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|424004591|ref|ZP_17747596.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|424021751|ref|ZP_17761460.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|424028401|ref|ZP_17767998.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|424587687|ref|ZP_18027259.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|424592498|ref|ZP_18031913.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|424596361|ref|ZP_18035668.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|424603214|ref|ZP_18042348.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|424605046|ref|ZP_18044033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|424607951|ref|ZP_18046885.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|424614591|ref|ZP_18053371.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|424617076|ref|ZP_18055761.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|424620972|ref|ZP_18059501.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|424643041|ref|ZP_18080819.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|424650106|ref|ZP_18087709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|424654938|ref|ZP_18092256.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|440711204|ref|ZP_20891845.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443505134|ref|ZP_21072075.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443509033|ref|ZP_21075783.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443512877|ref|ZP_21079500.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443516423|ref|ZP_21082923.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443521124|ref|ZP_21087454.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443521284|ref|ZP_21087606.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443530056|ref|ZP_21096073.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443532706|ref|ZP_21098709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443537421|ref|ZP_21103279.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|449057517|ref|ZP_21735813.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
gi|81858027|sp|Q9KNA8.1|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|340039746|gb|EGR00719.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|340044924|gb|EGR05872.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|341630144|gb|EGS55247.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|341631059|gb|EGS56000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|341631141|gb|EGS56081.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|341631864|gb|EGS56740.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|341645075|gb|EGS69231.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|356421241|gb|EHH74744.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|356424231|gb|EHH77646.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|356426470|gb|EHH79778.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|356430880|gb|EHH84085.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|356434968|gb|EHH88128.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|356436434|gb|EHH89548.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|356440411|gb|EHH93352.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|356442892|gb|EHH95725.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|356446030|gb|EHH98830.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|356454850|gb|EHI07497.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|356457717|gb|EHI10224.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|356649216|gb|AET29270.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796103|gb|AFC59573.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|395919246|gb|EJH30069.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|395921892|gb|EJH32711.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|395924724|gb|EJH35526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|395930735|gb|EJH41481.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|395933775|gb|EJH44514.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|395935252|gb|EJH45987.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|395938590|gb|EJH49282.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|395947636|gb|EJH58291.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|395964476|gb|EJH74693.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|395966295|gb|EJH76422.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|395969260|gb|EJH79147.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|395971527|gb|EJH81187.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|395973176|gb|EJH82746.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|395975239|gb|EJH84735.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|408009783|gb|EKG47676.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|408015828|gb|EKG53399.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|408043105|gb|EKG79126.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|408048055|gb|EKG83526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|408049864|gb|EKG85052.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|408058760|gb|EKG93545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|408613762|gb|EKK87048.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|408620829|gb|EKK93833.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|408652134|gb|EKL23366.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|408653028|gb|EKL24205.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|408664204|gb|EKL35043.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|408850645|gb|EKL90594.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|408854708|gb|EKL94456.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|408877826|gb|EKM16851.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|408880773|gb|EKM19691.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|439972691|gb|ELP48934.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443430432|gb|ELS73001.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443434270|gb|ELS80427.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443438064|gb|ELS87794.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443442174|gb|ELS95487.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443445153|gb|ELT01875.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443452607|gb|ELT12789.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443459626|gb|ELT27020.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443464052|gb|ELT35000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443467430|gb|ELT42086.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|448263228|gb|EMB00475.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
Length = 469
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 239/450 (53%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+L ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQLAQQLLSEQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ + V S L LV H + F + S +
Sbjct: 168 KNRPVALWNVPSALAELVWHPEQ---------------AFDYPRIDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRDFCRERVQDYHQARDFPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|417275265|ref|ZP_12062602.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2303]
gi|425271411|ref|ZP_18662912.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW15901]
gi|425282067|ref|ZP_18673178.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW00353]
gi|386241918|gb|EII78831.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2303]
gi|408197852|gb|EKI23101.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW15901]
gi|408205618|gb|EKI30474.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW00353]
Length = 472
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLR++TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRIITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 TL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|374292340|ref|YP_005039375.1| deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
gi|357424279|emb|CBS87146.1| Deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
Length = 494
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 231/461 (50%), Gaps = 22/461 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V ++I ++ DP + + ++ S+ L+ + S L++R +
Sbjct: 36 VIPLYILEEETGDPPCDPWPLGGAQRWWLHGSLERLATCCARHGSPLLLRRGEPGAVLDA 95
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + + V+ N Y P RD IK+ LK G S+ ++ E + NK+G P+
Sbjct: 96 LIAETGAECVLWNRRYTPAQTARDAAIKERLKARGIDARSFNAGLLAEPWTVRNKSGGPF 155
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + + S + L S+ +L+ G +
Sbjct: 156 KVFTPFWRH------------LSATLNPPLPTRAPSALKAPAKAPAGDALDSWGLLPTKP 203
Query: 183 S-SLGIK----TGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
+ G++ G + A L +F+ + Y R+ P +GTS LS +L FG I R+
Sbjct: 204 DWAAGLRKRWVPGETAALSHLADFLDGPVGAYATERDRPDRDGTSALSPYLAFGEIGPRQ 263
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ + G ++L ++ WR+F +L+ P + ++ + + W D
Sbjct: 264 VWHAARHAADARPEL-APGIDSFLREVGWREFQYHLLHHAPELPDRPLDPRFADFPWRED 322
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
L W +G TGYP++D+ + QL +G+MHNR+RM+ ASFL+K++ + W+ GE +F
Sbjct: 323 ---AAGLLAWQRGRTGYPIVDAGMRQLWETGWMHNRVRMIVASFLVKDLLLPWQEGERWF 379
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
+ L D DLA N GNWQW A G + PFFR+FNP++Q +KFD +G ++R+Y+P+L +L
Sbjct: 380 WDTLVDADLAQNAGNWQWVAGCGADAAPFFRVFNPVLQGEKFDPEGDYVRRYVPELDRLP 439
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
++IH PW A + L +AG+ LG +YP+PI++H +++ L
Sbjct: 440 PRWIHQPWAAPTELLRQAGVRLGDDYPRPIIDHGVARDRAL 480
>gi|422701792|ref|ZP_16759632.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342]
gi|315169765|gb|EFU13782.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342]
Length = 477
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 218/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYREQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELAS---- 253
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 254 --APSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFAKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D+A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDVAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 ETLQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS 278]
gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 278]
Length = 415
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 228/430 (53%), Gaps = 23/430 (5%)
Query: 42 LQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFF 101
+Q+ SDL+IR A++ + +L + N AV N + ++ +L IG
Sbjct: 1 MQSLGSDLVIRRGPAAQVLGQLARETNASAVYWNDVAQAGPRRVAASVEADLDHIGVASR 60
Query: 102 SYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKL 161
+ D ++ + + K G+ +F+ + K+ + K L ++L
Sbjct: 61 VFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALGDPPKP-------------LPTPARL 107
Query: 162 HKIINNNIISLNDLGFCKSNLSSLG-----IKTGASGAKILLNNFIKK-IKNYNINRNYP 215
+ + ++++DL + G + G A+ L +F++ + Y +R+ P
Sbjct: 108 PMVPDVTGLTVDDLRLEPTKPDWAGGLRATWQAGERAAQQRLRSFLESTVSGYAADRDRP 167
Query: 216 SINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYC 275
I+ TS LS HLRFG I+ R++ +F + G +LS++ WR+F + +LY
Sbjct: 168 DIDATSRLSPHLRFGEITPRQIWHAA-RFAAEERPAQAKGIDKFLSEIGWREFSRHLLYN 226
Query: 276 YPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRM 335
P++ +++ + +D W D+ A W +G TGYP++D+ + +L +G MHNR+RM
Sbjct: 227 NPDLASRNLQPSFDPFPWVQDDAA---LAAWQRGRTGYPIVDAGLRELWHTGSMHNRVRM 283
Query: 336 VTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQS 395
V AS L+K++ I+W+ GE +F + L D D SN +WQW A SG + P+FR+FNP++Q
Sbjct: 284 VAASLLVKHLLIDWRQGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQG 343
Query: 396 KKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKN 455
+KFD G ++R+++P+L++L IH PW A +L +AG+ LG++YP PI++H ++
Sbjct: 344 EKFDANGSYVRRWVPELARLPAGVIHQPWAAKPLELAEAGVTLGRSYPTPIIDHKQGRER 403
Query: 456 ILKRYNFIKN 465
L Y ++
Sbjct: 404 ALAAYASLRT 413
>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
bv. viciae 3841]
Length = 483
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 240/442 (54%), Gaps = 24/442 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L+ +LQ L++ A + ++ + + +AV N Y+P I D I
Sbjct: 58 WLHHSLEALNRSLQKRHGRLVLASGEALEVLRAFIKESGAEAVFWNRRYDPAGISIDARI 117
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K EL+ + S+ Q++ E + ++ G PY +++ + + +E + L++ P +
Sbjct: 118 KHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRA-LEGGDEPEPPLEA-PAE 175
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG-----IKTGASGAKILLNNFIK- 203
L + + +S+ +L + G G GA+ L+ F++
Sbjct: 176 LRLTSQLPTSE----------TLESWKLLPTKPDWAGDFVDLWTPGEEGAQQRLHAFVED 225
Query: 204 KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
++ Y NR+YP+ TS LS HL G IS ++ ++ D + + ++
Sbjct: 226 ALEGYKENRDYPARPATSMLSPHLALGEISPARIWDATRGLSQRVPAADIVHF---RKEI 282
Query: 264 IWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+F +L+ +P + + ++ +D + W +D+ +F W +G TGYP++D+ + QL
Sbjct: 283 AWREFSYHLLFHFPRLASANWNDRFDGLEWCNDS---DDFEAWRRGMTGYPIVDAGMRQL 339
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
G+MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D A+N +WQW A SG +
Sbjct: 340 WRHGWMHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADAS 399
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYP 443
PFFRIFNP++Q +KFD G +++ Y+P+L +L KYIH P++A L++AGI LG+ YP
Sbjct: 400 PFFRIFNPVLQGEKFDPNGDYVKTYVPELRELGAKYIHRPFEAPKSMLDEAGITLGQTYP 459
Query: 444 KPILEHSLSKKNILKRYNFIKN 465
+PI++H+ ++ L Y+ ++
Sbjct: 460 RPIVDHASARNRALAAYSATRD 481
>gi|50084372|ref|YP_045882.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Acinetobacter sp. ADP1]
gi|49530348|emb|CAG68060.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Acinetobacter sp. ADP1]
Length = 477
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 148/443 (33%), Positives = 253/443 (57%), Gaps = 28/443 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
+I+F + + +L L + LI++ K+I +I + +I V N +
Sbjct: 48 KIDFYMRQLTQLKQELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN--K 140
I RD +++ L IG + D+ +F I NK+ PY +F+ ++K E++ + K
Sbjct: 108 IERDHAVQEALSKIGKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPK 167
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS-SLGIKTGASGAKILLN 199
C+ YP K + + I SL LG+ + + G + A LL
Sbjct: 168 CF--PYPHKQKQQPEIAKKEA------AIPSLKQLGYSQIDQHIQNEWPIGETFALNLLE 219
Query: 200 NFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
+F + KI Y+ +R+YP+ +GTS++S +L G +SIR+ ++ IF+ + + G
Sbjct: 220 DFTQDKINRYHESRDYPAQDGTSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEI 279
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
WL++L+WR+FYQ +L+ +P + ++ F+ NI W ++ ++F W +G TG P++D
Sbjct: 280 WLNELLWREFYQQLLFDFPKLSRHQPFQDHTKNIPWNEND---EHFEAWIQGKTGIPIVD 336
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+ + QL ++G+MHNR+RM+ A FL KN+ I+W+ GE +F L D DLA+N+G WQWSAS
Sbjct: 337 AGMRQLKATGWMHNRVRMICAMFLSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSAS 396
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G + P+FRIFNP+ QS+KFD +G+F++K++P+L L +K+IH P+ A +K E
Sbjct: 397 TGTDASPYFRIFNPVTQSQKFDPEGVFLKKWIPELKHLDSKHIHDPY-AYQHKTE----- 450
Query: 438 LGKNYPKPILEHSLSKKNILKRY 460
NYPKPI++ ++KN ++ +
Sbjct: 451 --LNYPKPIIDLKATRKNAIEVF 471
>gi|432390684|ref|ZP_19633543.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE21]
gi|430921962|gb|ELC42783.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE21]
Length = 472
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ +A + + ++++ + + + N+ Y
Sbjct: 47 MSPRQAEFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI + ++ + Y +F+ +Q W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPSAVMTGNHEMYKVFTPFQNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS + I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSGM--IEPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|3947746|emb|CAA08916.1| DNA photolyase [Trichoderma atroviride]
Length = 629
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 250/478 (52%), Gaps = 47/478 (9%)
Query: 5 CVFI-----FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE 59
CV+I F+ ++ P+R ++F+ +++ L +L D L + K+
Sbjct: 169 CVYIISPQDFEAHLTSPVR---------VDFMLRTLSVLKDDLAALDIPLHVETVDKRKD 219
Query: 60 IKKLVIKL----NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
I + +++L + + N +YE + R+ + ++ F D + E+
Sbjct: 220 IPRRILELMEEWGSNHLFANMEYEVDELRRETRMIRQFAENNMSFEVVHDTCVVPPGELH 279
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSY--PVKSYLNNLVHSSKLHKIINNNIIS-- 171
+ TGK Y++++ + + W+ + N L+ Y P K N + + K + + I
Sbjct: 280 SGTGKQYAVYTPWYRAWMAHIHENLDLLEIYDRPEK----NPGATRRTFKTLFDCPIPDA 335
Query: 172 -----LNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSI 225
LND K L G A L F + + +Y+ RN P NGTS LS+
Sbjct: 336 PKNKQLNDEE--KKRFHGL-WPCGEHEAMSRLEKFCDEAVTSYHDRRNIPGDNGTSCLSV 392
Query: 226 HLRFGTISIRKLVKLIFKFIK-KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKS 283
HL GTIS R V+ K K G W+S++ WRDFY+ +L +P V +NK
Sbjct: 393 HLASGTISSRTCVRTARDRNKTKRLDGGHQGIHVWISEVAWRDFYKHVLVNWPYVCMNKP 452
Query: 284 FKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK 343
FK EY NI W +Y +F WC+G TG+P++D+A+ QLN GYMHNR RM+ ASFL K
Sbjct: 453 FKPEYANIEW---SYNMDHFEAWCEGRTGFPIVDAAMRQLNHMGYMHNRCRMIVASFLSK 509
Query: 344 NMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGI 403
++ I+W+ GE YF L D D ASNNG W +SAS G QP+FR+FNP++QS+KFD G
Sbjct: 510 DLLIDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRVFNPLLQSEKFDPNGE 569
Query: 404 FIRKYLPQLSKLSNKYIHSPW-KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+IRK++P+L LS+K IH P+ + + K +K G YPK I++H +++ L Y
Sbjct: 570 YIRKWIPELKALSDKEIHDPYNRGAGTKAKKQG------YPKQIVDHKGARERALSAY 621
>gi|238752103|ref|ZP_04613586.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380]
gi|238709680|gb|EEQ01915.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380]
Length = 480
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/400 (33%), Positives = 226/400 (56%), Gaps = 25/400 (6%)
Query: 68 NIDAVMINHDYEPQAIIRD-KLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFS 126
IDA+ N YE RD LI K + C S+ D ++ +L GK Y +F+
Sbjct: 96 QIDALFYNQQYEWNERQRDDALIAKLAGRVICH--SFHDSLLLPPGSVLTGNGKMYQVFT 153
Query: 127 FYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG 186
+++ +I+++ + Y + ++ KI S + + ++ +
Sbjct: 154 PFRRAFIQRLM----------MSDYRSVPAPKARQTKIAIEPA-SWGPFDYPQQSVDNQL 202
Query: 187 IKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
G A + L F + ++++Y R+ P++ GTS LS +L G +S R+ V +
Sbjct: 203 FPAGEEAALLRLRTFCREQVQDYQQQRDLPAVAGTSCLSPYLALGILSPRQCVNRLRAEC 262
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFL 304
+ ++ G F WL++LIWR+FY+ +L YP + ++ F D ++W N+++++ L
Sbjct: 263 PEVFEKADGGAFIWLNELIWREFYRHLLVAYPRLCQHRPFIDWTDAVVW---NHSEQHLL 319
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W +G TGYP++D+A+ QLN +G+MHNRLRM++ASFL+K++ INW+ GE YF ++L D D
Sbjct: 320 AWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDLLINWRHGERYFMSQLLDGD 379
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
LA+NNG WQW+AS+G + P+FRIFNP Q ++FD +GIFIR++LP+LS + + IH PW
Sbjct: 380 LAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKKGIFIRRWLPELSAVPDSDIHQPW 439
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ + +YP P+++H ++ L ++ K
Sbjct: 440 HWAQQQQHPL------DYPPPLVDHKQARLATLAAFDAAK 473
>gi|86144852|ref|ZP_01063184.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
gi|85837751|gb|EAQ55863.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
Length = 481
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 148/443 (33%), Positives = 250/443 (56%), Gaps = 25/443 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL--NIDAVMINHDYEPQAII 84
+ +FI++ + + L + L+ A + +I L +DA + + EP+ +
Sbjct: 48 KADFIYRHLKQFESQLAEFGITLLHLKATDFNDQAIQLINLCKQVDATYVYANSEPE--V 105
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQ 144
++L K L G K I +LNK G+ + +F+ ++ W+++V++
Sbjct: 106 DEQLRDKHLIASGIKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICS 165
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIISLN--------DLGFCKSNLSSLGIKTGASGAKI 196
PV S + SS+ + N + + + D F +++ + + +
Sbjct: 166 PTPVHSTGSAQAGSSETDSLQNPSQLKQSLSGFSGEYDFEFPRTDSERWPLSQDVLES-V 224
Query: 197 LLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL-VKLIFKFIKKHYKTDCIG 255
+ N K+ +Y+ R+ PS+ GTS LS +L G +S R L ++LI + + T +
Sbjct: 225 IPNFLANKVNDYSRLRDIPSVKGTSGLSPYLTIGAVSPRWLAIQLIQQQPDLLFDTQ-LP 283
Query: 256 YFTWLSQLIWRDFYQMILYCYPNVVNKS-FKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314
F+WL++LIWRDFY+ +++ +P +V + F+++Y+ + W DN +F WC+G TGYP
Sbjct: 284 AFSWLNELIWRDFYKHLMFHHPILVKGANFQQKYNGLDWYHDN---PSFKAWCEGRTGYP 340
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
L+D+A+ QL +G+MHNRLRMV ASFL K++ I+W+WGE +F + L D D ++NNG WQW
Sbjct: 341 LVDAAMRQLVETGWMHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQW 400
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
++S+GC +QP+FRIFNPI QS+KFD +GIFIRKY+P+L + +K++H P + K
Sbjct: 401 ASSTGCDAQPYFRIFNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDF----IAKN 456
Query: 435 GIILGKNYPKPILEHSLSKKNIL 457
GI Y +PI+EH ++ L
Sbjct: 457 GI--DSEYWQPIVEHKEARLRAL 477
>gi|451985074|ref|ZP_21933305.1| Deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 18A]
gi|451757248|emb|CCQ85828.1| Deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 18A]
Length = 476
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 243/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L + AV +N +Y
Sbjct: 47 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 107 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 158 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEEVAQERLRDF 216
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 217 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG P+ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGIPIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G++HNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 334 MRQLLATGWIHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 394 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 445
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 446 VDYPRPMVDLKASRERALAAF---RNLPPRD 473
>gi|146282327|ref|YP_001172480.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501]
gi|145570532|gb|ABP79638.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501]
Length = 476
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/449 (31%), Positives = 240/449 (53%), Gaps = 31/449 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F ++++EL+ LQ + L+IR + A + KL +L + + N +Y
Sbjct: 48 KVDFWLRNLVELAGRLQALNVPLLIRDVEEWQAAPDALLKLCQELAVQRLHYNGEYGVNE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + L+ G Y DQ++F +L ++G + +F +++ + ++ +
Sbjct: 108 QRRDQAVAARLRAAGIDVRRYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPA 167
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN--LSSLGIKTGASGAKILLNN 200
+ P + + +++ GF + + L +L G + A+ L
Sbjct: 168 CVAPPAPQH----------PMTVASDVPPDEVRGFDRPSDYLRTL-WPAGETFAQHRLAA 216
Query: 201 FI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
FI + Y+ R+ P+ GTS LS +L G ISIR+ + + + G TW
Sbjct: 217 FIGDDLHQYHQRRDLPAEPGTSQLSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTW 276
Query: 260 LSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+++L+WR+FY+ IL YP V ++++F+ E + + W A W +G TG+P+ID+
Sbjct: 277 INELLWREFYKHILVGYPRVSMHRAFRAETEALPWRR---ATDELQAWQEGRTGFPIIDA 333
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QL +G+MHNRLRMVTA FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+
Sbjct: 334 AMRQLRETGWMHNRLRMVTAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSAST 393
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G S P+FR+FNPI QS++FD G F+R++LP+L L + IH+P S +
Sbjct: 394 GTDSVPYFRLFNPISQSQRFDPDGQFLRRWLPELQGLGKREIHNPSTQRS--------LF 445
Query: 439 GK-NYPKPILEHSLSKKNILKRYNFIKNI 466
GK +YP PI++ S+ L + + ++
Sbjct: 446 GKADYPAPIIDLGESRARALDAFRNLPDV 474
>gi|358390515|gb|EHK39920.1| DNA photolyase PHR1 [Trichoderma atroviride IMI 206040]
Length = 629
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 250/478 (52%), Gaps = 47/478 (9%)
Query: 5 CVFI-----FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE 59
CV+I F+ ++ P+R ++F+ +++ L +L D L + K+
Sbjct: 169 CVYIISPQDFEAHLTSPVR---------VDFMLRTLSVLKDDLAALDIPLHVETVDKRKD 219
Query: 60 IKKLVIKL----NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
I + +++L + + N +YE + R+ + ++ F D + E+
Sbjct: 220 IPRRILELMEEWGSNHLFANMEYEVDELRRETRMIRQFAENNMSFEVVHDTCVVPPGELH 279
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSY--PVKSYLNNLVHSSKLHKIINNNIIS-- 171
+ TGK Y++++ + + W+ + N L+ Y P K N + + K + + I
Sbjct: 280 SGTGKQYAVYTPWYRAWMAHIHENLDLLEIYDRPEK----NPGATRRTFKTLFDCPIPDA 335
Query: 172 -----LNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSI 225
LND K L G A L F + + +Y+ RN P NGTS LS+
Sbjct: 336 PKNKQLNDEE--KKRFHGL-WPCGEHEAMSRLEKFCDEAVTSYHDRRNIPGDNGTSCLSV 392
Query: 226 HLRFGTISIRKLVKLIFKFIK-KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKS 283
HL GTIS R V+ K K G W+S++ WRDFY+ +L +P V +NK
Sbjct: 393 HLASGTISSRTCVRTARDRNKTKRLDGGHQGIHVWISEVAWRDFYKHVLVNWPYVCMNKP 452
Query: 284 FKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK 343
FK EY NI W +Y +F WC+G TG+P++D+A+ QLN GYMHNR RM+ ASFL K
Sbjct: 453 FKPEYANIEW---SYNMDHFEAWCEGRTGFPIVDAAMRQLNHMGYMHNRCRMIVASFLSK 509
Query: 344 NMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGI 403
++ I+W+ GE YF L D D ASNNG W +SAS G QP+FR+FNP++QS+KFD G
Sbjct: 510 DLLIDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRVFNPLLQSEKFDPNGE 569
Query: 404 FIRKYLPQLSKLSNKYIHSPW-KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+IRK++P+L LS+K IH P+ + + K +K G YPK I++H +++ L Y
Sbjct: 570 YIRKWIPELKALSDKEIHDPYNRGAGTKAKKQG------YPKQIVDHKGARERALSAY 621
>gi|288936505|ref|YP_003440564.1| deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22]
gi|288891214|gb|ADC59532.1| Deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22]
Length = 480
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/449 (30%), Positives = 235/449 (52%), Gaps = 33/449 (7%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKE-IKKLVIKLNIDAVMINHDY 78
+ R+ FI + L L L + A AS E + + + + N+ Y
Sbjct: 47 LAPRQAAFIVSHLHSLHTALAERGIPLWVEEAGDFTASVERLAHFCQQHQVSHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD ++ L+ + C+ F D V+ ++ +G+ Y +F+ ++ +I +++
Sbjct: 107 EFNERQRDAAVENTLRDVICQGFD--DSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRD 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
L V + K + L +L + ++ L A L
Sbjct: 165 G------------LPACVAAPKPRQAPARQAPPLPELNYPQTPFDGLLFAADEKTALARL 212
Query: 199 NNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKT-DCIGY 256
F ++ Y R++P++ GTS LS L G +S R+ + + + +H D
Sbjct: 213 RAFCQQPAAEYEGQRDFPAVEGTSRLSPCLATGVLSPRQC---LHRLLTEHPAALDGGAG 269
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TWL++LIWR+FY+ ++ YP + + F D + W D+ A W +G TG+P+
Sbjct: 270 ATWLNELIWREFYRHLMVYYPKLCKGRPFIAWTDKVAWREDDAA---LQAWQRGETGFPI 326
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN++G+MHNRLRM+ ASFL K++ ++W+ GE YF ++L D DLA+NNG WQW+
Sbjct: 327 VDAAMRQLNATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQLIDGDLAANNGGWQWA 386
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNP Q +KFD QG+F+R++LP+L+K+ K +H PW + +K G
Sbjct: 387 ASTGTDAAPYFRIFNPTTQGEKFDKQGVFMRRWLPELAKVPEKALHQPWAWA----DKQG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIK 464
I L +YP+PI++H +++ L + +
Sbjct: 443 IKL--DYPRPIVDHKQARQETLAAWEAAR 469
>gi|238762829|ref|ZP_04623797.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC
33638]
gi|238698840|gb|EEP91589.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC
33638]
Length = 481
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 222/400 (55%), Gaps = 26/400 (6%)
Query: 69 IDAVMINHDYEPQAIIRDKLIKKEL--KVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFS 126
+DA+ N YE +RD+ + +L + I C F D V+ +L + Y +F+
Sbjct: 97 VDALFYNQQYELNERVRDEALMAQLSQRAIACHGF--HDSVLLPPGTVLTGNNEMYKVFT 154
Query: 127 FYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG 186
+++ +I+++ + C P K+ V S+ L + + + +
Sbjct: 155 PFRRAFIQRLMMSDCRSVPAP-KARTTAAVTPSQ----------PLAPFDYPQQPVDNQL 203
Query: 187 IKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
G A L F ++ ++Y R++P+I GTS LS +L G +S R+ V +
Sbjct: 204 FPAGEEAALQRLRRFCREDAQDYQQQRDFPAIAGTSCLSPYLALGILSPRQCVNRLRAEC 263
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFL 304
+ G F WL++LIWR+FY+ +L YP + + F D ++W N++++ +
Sbjct: 264 PDLLENVEGGAFIWLNELIWREFYRHLLVAYPRLCQHHPFISWTDAVIW---NHSEQQLI 320
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W +G TGYP++D+A+ QLN +G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D D
Sbjct: 321 AWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDLLIDWRHGERYFMSQLLDGD 380
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
LA+NNG WQW+AS+G + P+FRIFNP Q ++FD G+FIR++LP+L+ + + IH PW
Sbjct: 381 LAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVPDSDIHQPW 440
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ + + + +YP P+++H ++ L + K
Sbjct: 441 RWAERQQQPL------DYPPPLVDHKQARLATLAAFEAAK 474
>gi|257416128|ref|ZP_05593122.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG]
gi|257157956|gb|EEU87916.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG]
Length = 477
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 218/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGNKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELAS---- 253
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F+ W
Sbjct: 254 --APSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFVKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|257085148|ref|ZP_05579509.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
gi|256993178|gb|EEU80480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
Length = 477
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 217/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELAS---- 253
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 254 --APSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND---PEMFAKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|29376159|ref|NP_815313.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
gi|227518787|ref|ZP_03948836.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
gi|422714588|ref|ZP_16771314.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309A]
gi|422715846|ref|ZP_16772562.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309B]
gi|424676729|ref|ZP_18113600.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV103]
gi|424681453|ref|ZP_18118240.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV116]
gi|424683643|ref|ZP_18120393.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV129]
gi|424686453|ref|ZP_18123121.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV25]
gi|424690275|ref|ZP_18126810.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV31]
gi|424695368|ref|ZP_18131751.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV37]
gi|424696893|ref|ZP_18133234.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV41]
gi|424699721|ref|ZP_18135932.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV62]
gi|424703266|ref|ZP_18139400.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV63]
gi|424707237|ref|ZP_18143221.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV65]
gi|424717102|ref|ZP_18146400.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV68]
gi|424720681|ref|ZP_18149782.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV72]
gi|424724230|ref|ZP_18153179.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV73]
gi|424733819|ref|ZP_18162374.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV81]
gi|424743880|ref|ZP_18172185.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV85]
gi|424750610|ref|ZP_18178674.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV93]
gi|29343622|gb|AAO81383.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
gi|227073782|gb|EEI11745.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
gi|315575832|gb|EFU88023.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309B]
gi|315580484|gb|EFU92675.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309A]
gi|402351160|gb|EJU86052.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV116]
gi|402356349|gb|EJU91083.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV103]
gi|402364402|gb|EJU98838.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV31]
gi|402364641|gb|EJU99076.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV129]
gi|402367307|gb|EJV01648.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV25]
gi|402368545|gb|EJV02858.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV37]
gi|402375650|gb|EJV09630.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV62]
gi|402377222|gb|EJV11133.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV41]
gi|402384835|gb|EJV18376.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV65]
gi|402385271|gb|EJV18811.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV63]
gi|402386450|gb|EJV19956.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV68]
gi|402391149|gb|EJV24465.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV81]
gi|402393152|gb|EJV26382.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV72]
gi|402395537|gb|EJV28639.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV73]
gi|402399794|gb|EJV32657.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV85]
gi|402406588|gb|EJV39138.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV93]
Length = 477
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 218/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYREQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASV--- 254
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F+ W
Sbjct: 255 ---PSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND---PEMFVKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|256959014|ref|ZP_05563185.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
gi|257079045|ref|ZP_05573406.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
gi|294781685|ref|ZP_06747020.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
gi|307270984|ref|ZP_07552267.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
gi|307289140|ref|ZP_07569096.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
gi|397699913|ref|YP_006537701.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis D32]
gi|422704508|ref|ZP_16762318.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302]
gi|422708504|ref|ZP_16766032.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027]
gi|422869328|ref|ZP_16915848.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TX1467]
gi|256949510|gb|EEU66142.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
gi|256987075|gb|EEU74377.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
gi|294451237|gb|EFG19704.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
gi|306499849|gb|EFM69210.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
gi|306512482|gb|EFM81131.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
gi|315037012|gb|EFT48944.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027]
gi|315164049|gb|EFU08066.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302]
gi|329571665|gb|EGG53346.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TX1467]
gi|397336552|gb|AFO44224.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis D32]
Length = 477
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 219/397 (55%), Gaps = 22/397 (5%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTG 190
KW E K PV SY + S+ L + S+G KT
Sbjct: 152 KWKEAPKETPI-----PV-SYTAEKIFSACL--FPEEEAAYREQIARIPLTHYSVGEKT- 202
Query: 191 ASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHY 249
A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 203 ---ARRCLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASV----- 254
Query: 250 KTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKG 309
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F+ W KG
Sbjct: 255 -PSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND---PEMFVKWQKG 310
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+N
Sbjct: 311 ETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNI 370
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSY 429
G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 371 GGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEA 430
Query: 430 KLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 431 LQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|448583039|ref|ZP_21646508.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
gi|445729996|gb|ELZ81588.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
Length = 482
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/477 (28%), Positives = 244/477 (51%), Gaps = 37/477 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD+++LD + R+ ++ ++ EL + SDL++ +
Sbjct: 27 VAPLFVFDRDVLDHAGAP------RVRYLLDALAELRGAYRERGSDLLVARGDPRAVVPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L+ + DY A RD ++ L G D + I G Y
Sbjct: 81 VAAALDAERATWGIDYSGLARERDADVRLALDDAGVGREPVHDAIFHPPGSITTNAGDTY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLH-----------KIINNNIIS 171
S+++++ KKW ++ K + YP + ++L ++ L + ++ +
Sbjct: 141 SVYTYFWKKWRDRDKP-----EPYP-EPDADDLADANTLETAAEALADAEFDVAAGDLPT 194
Query: 172 LNDLGFCKSNLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFG 230
++DLGF + S+ G A+ L+ F I Y +R+YP+ + TS LS L+FG
Sbjct: 195 MSDLGFEEP--SAAVQSAGTEAARERLSAFCADAIYRYADDRDYPTRDATSRLSTDLKFG 252
Query: 231 TISIRKLVKLIFKFIKK--HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEY 288
TI IR++ + + + + F SQL WR+FY +L +PNVV +++K+
Sbjct: 253 TIGIREVYAATAAAREGVGGERDESVEEFQ--SQLAWREFYAHVLREHPNVVTENYKEYE 310
Query: 289 DNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGIN 348
++I W D + W +G TGYP++D+ + QL YMHNR+RM+ ASFL K++ +
Sbjct: 311 NDIAWRDD---AEELAAWKEGKTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCD 367
Query: 349 WKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKY 408
W+ G +F L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D G +I++Y
Sbjct: 368 WRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKRY 427
Query: 409 LPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+P+LS ++ IH + + + E+ L +YP+PI++HS ++ + + +
Sbjct: 428 VPELSDVTANTIHEWHELTDLERER----LAPDYPEPIVDHSERRERAISMFEAARG 480
>gi|424865450|ref|ZP_18289315.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
gi|400758718|gb|EJP72920.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
Length = 388
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/411 (36%), Positives = 221/411 (53%), Gaps = 28/411 (6%)
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
EI + N D + N+ + RD IKK + ++ DQ++FE I
Sbjct: 2 EIYSFFKEHNFDTLYFNNTFGEDENSRDVKIKKLFDKRSFSYKTFTDQILFEPGSIRTIE 61
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
KPYS+F+ +++KW+E + ++ + K KI+N+NI N+ F
Sbjct: 62 NKPYSVFTPFKRKWLENFNIDLLDIE----------YKYVPKNKKILNSNI---NNFDFN 108
Query: 179 KSNLSSLGI-KTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
N S L + G GAK +L NF+K K+K YN +RN P I GTS +S +L G +S ++
Sbjct: 109 SPNDSRLSQWELGEEGAKKILKNFLKNKVKRYNEDRNDPIIEGTSRISPYLALGILSSKR 168
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWES 295
+ K + G W+ +++WR+FY+ I++ +P V K F++ DNI W
Sbjct: 169 CILEALKLNDLDIHSGNKGILKWIDEIVWREFYRNIMHSFPKVSKGKPFQEYTDNINWR- 227
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
Y + F W G TG+P+ID+A+ Q+N G+MHNRLRMV A F KNM +W+ GE Y
Sbjct: 228 --YDESEFQAWKNGRTGFPIIDAAMRQMNQEGWMHNRLRMVVAMFFTKNMLHDWRLGEKY 285
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F L D D +SNNG WQWSAS+G + P+FRIFNPI QSK FD G FI+KY+P+L L
Sbjct: 286 FMESLIDGDFSSNNGGWQWSASTGTDAAPYFRIFNPITQSKNFDKNGEFIKKYIPELKDL 345
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
IH P + I NYP+PIL+ S+ ++ + K+I
Sbjct: 346 DASVIHEP---------PSNIRDHLNYPQPILDLKESRLRAIEAFKNAKDI 387
>gi|256961892|ref|ZP_05566063.1| phrB [Enterococcus faecalis Merz96]
gi|293382960|ref|ZP_06628878.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
gi|293389551|ref|ZP_06634008.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
gi|312907569|ref|ZP_07766560.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
512]
gi|312910187|ref|ZP_07769034.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
516]
gi|256952388|gb|EEU69020.1| phrB [Enterococcus faecalis Merz96]
gi|291079625|gb|EFE16989.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
gi|291081168|gb|EFE18131.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
gi|310626597|gb|EFQ09880.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
512]
gi|311289460|gb|EFQ68016.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
516]
Length = 477
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 218/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYREQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASV--- 254
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F+ W
Sbjct: 255 ---PSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND---PEMFVKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|422920343|ref|ZP_16953666.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae BJG-01]
gi|341650406|gb|EGS74272.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae BJG-01]
Length = 469
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 238/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ ++EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLVELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWNVPSALAELVWHPEQ---------------AFDYPRIDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRDFCRGRVQDYHQARDFPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|257422581|ref|ZP_05599571.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
gi|422706634|ref|ZP_16764332.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043]
gi|257164405|gb|EEU94365.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
gi|315155723|gb|EFT99739.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043]
Length = 477
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 218/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYREQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASV--- 254
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F+ W
Sbjct: 255 ---PSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND---PEMFVKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|191167217|ref|ZP_03029036.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
gi|309797420|ref|ZP_07691812.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
gi|190902765|gb|EDV62495.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
gi|308118944|gb|EFO56206.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
Length = 472
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|301647446|ref|ZP_07247253.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1]
gi|301074420|gb|EFK89226.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1]
Length = 472
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 241/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDQGGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 TL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|421879677|ref|ZP_16311138.1| PhrB protein [Leuconostoc citreum LBAE C11]
gi|390446444|emb|CCF27258.1| PhrB protein [Leuconostoc citreum LBAE C11]
Length = 478
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 247/463 (53%), Gaps = 29/463 (6%)
Query: 13 ILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL-NIDA 71
I+DP + + + F F S NL N + L++ + +KL L I
Sbjct: 36 IVDPEQIETTASLNQSAF-FASAKAFQANLANENIHLLVLKGTPESQFEKLTAALPEISD 94
Query: 72 VMINHDYEPQAIIRDKLIKKELKV-IGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
+ N RD+ + + +G K +Y D + NEI G Y IF+ Y K
Sbjct: 95 LYFNFVERGYGRQRDQQVAHHCQTTLGLKTHAYIDYNLHSANEIKKADGAGYQIFTPYFK 154
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSS-----L 185
+WI K PVK + +L + ++ N + L+ G S ++ L
Sbjct: 155 RWITLPKPK-------PVKVSVTSL----QEKQMANIEPLHLHQEGLLTSLINEKHDKQL 203
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+ G + A L +FI+ + Y+ R+ P ++ TS+LS +LR G I+IR + + +
Sbjct: 204 VGQVGEAKALQTLKDFIQSHLAEYDTQRDLPFLDATSHLSRYLRTGEIAIRTIYQAVIN- 262
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFL 304
+ + G T++ +L WRD+Y MI P +S + E+ I W +++ +FL
Sbjct: 263 -----EPESEGQQTFIKELAWRDYYNMIYAMNPQQNTQSLRPEFQKIAWRNNH---NDFL 314
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W G TG+P++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D+D
Sbjct: 315 LWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRWGEQYFHDQLLDYD 374
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
ASN G WQW+AS+G S P+FRIFNP QS+KFD G FI++++P+LS+++N IH P
Sbjct: 375 PASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFDPDGQFIKQFVPELSQITNDKIHEPQ 434
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+ + ++ + L K+YPKP++ H ++ ++ Y K+ +
Sbjct: 435 LLTDLEQKEFQVTLDKDYPKPMVTHKQARLRAIEVYEQSKDTV 477
>gi|429335278|ref|ZP_19215915.1| deoxyribodipyrimidine photolyase [Pseudomonas putida CSV86]
gi|428760080|gb|EKX82357.1| deoxyribodipyrimidine photolyase [Pseudomonas putida CSV86]
Length = 428
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/440 (30%), Positives = 241/440 (54%), Gaps = 30/440 (6%)
Query: 28 IEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQAI 83
++F +++ EL L +Y+ L+IR+A ++ ++V+++ + V +N +Y
Sbjct: 1 MDFWLRNLRELQEALAHYNIPLLIRHAEHWRDAPQVVLEVCQAHGVQDVHVNEEYGINET 60
Query: 84 IRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYL 143
RD+ + + L+ + S+ DQ++F+ +L + + +F+ ++K CY
Sbjct: 61 RRDRQVGELLQRHDIRLHSHLDQLLFKPGTVLTRNDGYFKVFTQFRKA---------CYQ 111
Query: 144 QSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
+ + L L N+ I ++ L L G A+ L +F
Sbjct: 112 RLHHALPPLQRLPRKQDRPAATNDAIPEAIEGFALPCDTLRDL-WPAGERHARKRLEDFA 170
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ + +Y R+ PS++GTS LS +L G +S+R+ + +++ G TW++
Sbjct: 171 QDAMADYPEQRDIPSVDGTSQLSPYLAAGVVSVRQCLHAALAHNHGEFESGNPGAVTWIN 230
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+L+WR+FY+ +L YP V +++F+ + + W A ++ W +G TG P++D+A+
Sbjct: 231 ELLWREFYKHVLTGYPRVSRHRAFRPATEAVQWRD---APEDLKAWQEGRTGVPIVDAAM 287
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 288 RQLLATGWMHNRLRMVVAMFLSKNLLIDWRKGEAFFMRHLIDGDLAANNGGWQWSASTGT 347
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
S P+FR+FNP+ QS++FD +G F+R +LP+L L +K IHSP G+ +
Sbjct: 348 DSVPYFRVFNPVSQSERFDKKGRFLRHWLPELKDLDDKEIHSP----------GGLFSVR 397
Query: 441 NYPKPILEHSLSKKNILKRY 460
YP+PI++ +S++ ++ +
Sbjct: 398 GYPQPIVDLGMSRRRAIEAF 417
>gi|406658770|ref|ZP_11066910.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
gi|405578985|gb|EKB53099.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
Length = 470
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/394 (33%), Positives = 210/394 (53%), Gaps = 46/394 (11%)
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQ 144
RD+ + G +Y+D + E++N+ PY +F+ Y KKW++ K +
Sbjct: 106 RDQEAAHFFREKGIAIHAYQDHYLHGSQEVINQASLPYKVFTPYYKKWLQLPKETPIVID 165
Query: 145 -----------SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASG 193
+ V S LN L H K G
Sbjct: 166 YSQVDWLFVPNAKTVDSKLNTLFRPLPYH-------------------------KPGEEA 200
Query: 194 AKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
A L+ FI++ ++ Y+++R+YP +GTS LS++LR G I+IR + I K
Sbjct: 201 ALEQLHLFIEEGLEAYDVSRDYPEYDGTSRLSVYLRTGEINIRTVYAAISK------AKA 254
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
G ++ +L+WR+FY MI +P+ + + ++ I WE+D + F W G TG
Sbjct: 255 SKGKAVFIKELVWREFYHMIYVNHPHQKQEPLQAQFAAIEWEND---QALFEQWKAGTTG 311
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
YP++D+A+ QL+ +G+MHNRLRM+ ASFL+K++ I+W+WGE YF L D+D ASN G W
Sbjct: 312 YPMVDAAMRQLSQTGWMHNRLRMIVASFLVKDLLIDWRWGEEYFQEALMDYDSASNIGGW 371
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QW+AS+G + P+FRIFNP Q+K+FD +G FI+ Y+PQL L K+++ PWK +
Sbjct: 372 QWAASTGTDAVPYFRIFNPTTQAKRFDPKGHFIKTYVPQLEALPLKWLYEPWKLPLDLQD 431
Query: 433 KAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
G ++YP PI+ H + +K + +Y + K +
Sbjct: 432 DLGFKPERDYPLPIVSHDIQRKKAIAKYEWAKEV 465
>gi|255972759|ref|ZP_05423345.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
gi|255963777|gb|EET96253.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
Length = 473
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 217/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 88 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 147
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 148 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYREQIARIPLTHYS 193
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 194 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASM--- 250
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 251 ---PSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFAKWQ 304
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 305 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 364
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 365 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 424
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 425 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 463
>gi|206580444|ref|YP_002239663.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae 342]
gi|206569502|gb|ACI11278.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342]
Length = 480
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/449 (30%), Positives = 235/449 (52%), Gaps = 33/449 (7%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKE-IKKLVIKLNIDAVMINHDY 78
+ R+ FI + L L L + A AS E + + + + N+ Y
Sbjct: 47 LAPRQAAFIASHLHSLHAALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD ++ L+ + C+ F D V+ ++ +G+ Y +F+ ++ +I +++
Sbjct: 107 EFNERQRDAAVENTLRDVICQGFD--DSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRD 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
L V + K + L +L + ++ L A L
Sbjct: 165 G------------LPACVAAPKPRQAPARQAPPLPELNYPQTPFDGLLFAADEKTALARL 212
Query: 199 NNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKT-DCIGY 256
F ++ Y R++P++ GTS LS L G +S R+ + + + +H D
Sbjct: 213 RAFCQQPAAEYEGQRDFPAVEGTSRLSPCLATGVLSPRQC---LHRLLTEHPAALDGGAG 269
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TWL++LIWR+FY+ ++ YP + + F D + W D+ A W +G TG+P+
Sbjct: 270 ATWLNELIWREFYRHLMVYYPKLCKGRPFIAWTDKVAWREDDAA---LQAWQRGETGFPI 326
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN++G+MHNRLRM+ ASFL K++ ++W+ GE YF ++L D DLA+NNG WQW+
Sbjct: 327 VDAAMRQLNATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQLIDGDLAANNGGWQWA 386
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNP Q +KFD QG+F+R++LP+L+K+ K +H PW + +K G
Sbjct: 387 ASTGTDAAPYFRIFNPTTQGEKFDKQGVFMRRWLPELAKVPEKALHQPWAWA----DKQG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIK 464
I L +YP+PI++H +++ L + +
Sbjct: 443 IKL--DYPRPIVDHKQARQETLAAWEAAR 469
>gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
Length = 481
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/399 (32%), Positives = 216/399 (54%), Gaps = 22/399 (5%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSF 127
+DA+ N YE RD+ +L S+ D V+ + + Y IF+
Sbjct: 96 QVDALFYNQQYELNERRRDEAFTAQLNRQSIACHSFHDSVLLPPGSVQTGNHEMYKIFTP 155
Query: 128 YQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI 187
+++ +I+++ + C P + V S L + N L
Sbjct: 156 FRRAFIQRLMMSDCRCVPAPQARQNSGAVELSPLEPFDYPQHSADNSL-----------F 204
Query: 188 KTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G A L +F + ++++Y R+ P+I GTS LS +L G +S R+ +
Sbjct: 205 PAGEEAALQRLRSFCREQVQDYLQQRDRPAIAGTSCLSPYLALGIVSPRQCFNRLRAECP 264
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLN 305
+ G FTWL++LIWR+FY+ +L YP + + F D + W N++++ +
Sbjct: 265 DLLERSDSGAFTWLNELIWREFYRHLLVAYPRLCQHHPFIGWTDAVRW---NHSEQQLIA 321
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
W +G TGYP++D+A+ QLN +G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D DL
Sbjct: 322 WQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDLLIDWRHGERYFMSQLLDGDL 381
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
A+NNG WQW+AS+G + P+FRIFNP Q ++FD +G FIR++LP+L+ + + IH PW+
Sbjct: 382 AANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTFIRRWLPELAAVPDSDIHQPWR 441
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ + + NYP P+++H L++ L ++ K
Sbjct: 442 WAQRQQQHL------NYPPPLVDHKLARLATLAAFDAAK 474
>gi|397665892|ref|YP_006507429.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395129303|emb|CCD07533.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 154/447 (34%), Positives = 243/447 (54%), Gaps = 33/447 (7%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+I L +L L++R + I +LV + +++V N YEPQ I RDK I
Sbjct: 50 WLHHSLIALGKSLNQQGLSLVLRKGSPQEIILELVAQYGVESVYWNRCYEPQVIARDKKI 109
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K L K S+ ++ E I NK G + +F+ Y K+ C
Sbjct: 110 KLALGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQ---------C-------- 152
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCK-------SNLSSLGIKTGASGAKILLNNFI 202
+ N+ L K I+ +DLG K + S G GA+ L+ FI
Sbjct: 153 RQILNIPSPFMLTKRPRGIEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFI 212
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ Y R++P+ N TS LS HL FG IS +++ + + K D +LS
Sbjct: 213 VHNLSGYKRERDFPAKNATSRLSPHLHFGEISPWVILRAL-ELAKLEQTCDLASVEHFLS 271
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+L WR+F +LY +P + ++F+KE+D W++D ++ W KG TGYP+ID+ +
Sbjct: 272 ELGWREFSVYLLYHFPKLDCENFRKEFDAFPWQND---EQLLTCWQKGMTGYPIIDAGMR 328
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
+L ++GYMHNR+RM+ ASFL K++ I+W+ G +F + L D DLA+N+ +WQW A G
Sbjct: 329 ELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGAD 388
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ P+FRIFNP++QS+KFD GI+IR+++P+L++L+++ IH PW + + I LGK
Sbjct: 389 AAPYFRIFNPVLQSQKFDPDGIYIRQWIPELAQLNSQSIHQPWTDA----DANSIFLGKK 444
Query: 442 YPKPILEHSLSKKNILKRYNFIKNILN 468
YPKPI++H ++ L Y IK ++
Sbjct: 445 YPKPIIDHQEARTKALSYYQQIKKGMD 471
>gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
Length = 471
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 154/447 (34%), Positives = 243/447 (54%), Gaps = 33/447 (7%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+I L +L L++R + I +LV + +++V N YEPQ I RDK I
Sbjct: 50 WLHHSLIALGKSLNQQGLSLVLRKGDPQEIILELVAQYGVESVYWNRCYEPQVIARDKKI 109
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K L K S+ ++ E I NK G + +F+ Y K+ C
Sbjct: 110 KLALGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQ---------C-------- 152
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCK-------SNLSSLGIKTGASGAKILLNNFI 202
+ N+ L K I+ +DLG K + S G GA+ L+ FI
Sbjct: 153 RQILNIPSPFMLTKRPRGIEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFI 212
Query: 203 -KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ Y R++P+ N TS LS HL FG IS +++ + + K D +LS
Sbjct: 213 VHHLSGYKRERDFPAKNATSRLSPHLHFGEISPWVILRAL-ELAKLEQTCDLASVEHFLS 271
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+L WR+F +LY +P + ++F+KE+D W++D ++ W KG TGYP+ID+ +
Sbjct: 272 ELGWREFSVYLLYHFPKLDCENFRKEFDAFPWQND---EQLLTCWQKGMTGYPIIDAGMR 328
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
+L ++GYMHNR+RM+ ASFL K++ I+W+ G +F + L D DLA+N+ +WQW A G
Sbjct: 329 ELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGAD 388
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ P+FRIFNP++QS+KFD GI+IR+++P+L++L+++ IH PW + + I LGK
Sbjct: 389 AAPYFRIFNPVLQSQKFDPDGIYIRQWIPELAQLNSQSIHQPWTDA----DANSIFLGKK 444
Query: 442 YPKPILEHSLSKKNILKRYNFIKNILN 468
YPKPI++H ++ L Y IK ++
Sbjct: 445 YPKPIIDHQEARTKALSYYQQIKKGMD 471
>gi|340518124|gb|EGR48366.1| DNA photolyase, class I [Trichoderma reesei QM6a]
Length = 591
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 159/475 (33%), Positives = 250/475 (52%), Gaps = 41/475 (8%)
Query: 5 CVFI-----FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE 59
C++I F+ ++ P+R ++F+ +++ L +L D L + K+
Sbjct: 131 CMYIVSPQDFEAHLTSPVR---------VDFMLRTLSVLKQDLAALDIPLYVETVDKRKD 181
Query: 60 IKKLVIKL----NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
I + + ++ + + N +YE + R+ + + F D + E+
Sbjct: 182 IPRRIFEIMEEWGSNHLFANIEYEVDELRREAQMVRHFAENNKSFEVVHDTCVVPPGELH 241
Query: 116 NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIIS---- 171
+GK Y+++S + + W+ + N L+ + + N K K+ + +I
Sbjct: 242 TGSGKQYAVYSPWYRAWMAHIHENLDLLELFD-RPERNPDGARQKFQKLFDCSIPDAPEN 300
Query: 172 --LNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLR 228
L+D K +L +L G A L + + I +Y+ RN P +GTS LS+HL
Sbjct: 301 KRLSDAE--KKSLRAL-WPCGEHEAMARLEKYCDEAIGDYHNKRNIPGDDGTSRLSVHLA 357
Query: 229 FGTISIRKLVKLIFKFIK-KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKK 286
GTIS R V+ K K G W+S++ WRDFY+ +L +P V +NK FK
Sbjct: 358 SGTISSRTCVRTARDRNKTKKLDGGHQGIQVWISEVAWRDFYKHVLVHWPYVCMNKPFKP 417
Query: 287 EYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMG 346
EY NI W +Y + +F WC+G TG+P++D+A+ QLN GYMHNR RM+ ASFL K++
Sbjct: 418 EYSNIQW---SYDRDHFAAWCEGRTGFPIVDAAMRQLNHMGYMHNRCRMIVASFLSKDLL 474
Query: 347 INWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIR 406
I+W+ GE YF L D D ASNNG W +SAS G QP+FRIFNP++QS+KFD G +IR
Sbjct: 475 IDWRMGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPYFRIFNPLLQSEKFDPNGDYIR 534
Query: 407 KYLPQLSKLSNKYIHSPW-KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
K++P+L+ LS+K IH P+ + + K +K G YPK I+EH ++ L Y
Sbjct: 535 KWVPELAGLSDKEIHDPYNRGAGTKAKKVG------YPKQIVEHKGARDRALSAY 583
>gi|422791486|ref|ZP_16844189.1| DNA photolyase [Escherichia coli TA007]
gi|323971992|gb|EGB67212.1| DNA photolyase [Escherichia coli TA007]
Length = 472
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 242/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ +W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLNDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 TL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|307315377|ref|ZP_07594947.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
gi|378713928|ref|YP_005278821.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KO11FL]
gi|386608033|ref|YP_006123519.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli W]
gi|386702523|ref|YP_006166360.1| deoxyribodipyrimidine photolyase [Escherichia coli KO11FL]
gi|386708475|ref|YP_006172196.1| deoxyribodipyrimidine photolyase [Escherichia coli W]
gi|306905271|gb|EFN35815.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
gi|315059950|gb|ADT74277.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli W]
gi|323379489|gb|ADX51757.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli KO11FL]
gi|383394050|gb|AFH19008.1| deoxyribodipyrimidine photolyase [Escherichia coli KO11FL]
gi|383404167|gb|AFH10410.1| deoxyribodipyrimidine photolyase [Escherichia coli W]
Length = 472
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
Length = 469
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 241/447 (53%), Gaps = 33/447 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FI++ + L L + L + + A+ + +L LN + V+ N DYE
Sbjct: 48 QADFIWRRLSALQQELAAINIPLFYQQVADFREAAHAVNQLAKALNANQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD ++ L G + ++ D+ I + K G + +F+ +++ W+ +
Sbjct: 108 QQRDLRTEQLLAEQGISWSAFDDKCILPPGSVRTKQGDFFKVFTPFKRAWLSLFQP---- 163
Query: 143 LQSYPVKSYLNNLVHSSKLHKIIN--NNIISLNDLGFCKSNLSSLGIKTGASGAKILLNN 200
PV HS+ + N ++++ D F + S + L +
Sbjct: 164 ----PVIPR----NHSAAPWDVPNEFSHLVWNTDQVFNYPRVDSSQWPVEFEVIRTQLRD 215
Query: 201 FIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F + ++++Y+ R++P+ GTS LS +L G +S R+ V +++ + G W
Sbjct: 216 FCRERVQDYHQWRDFPAREGTSVLSPYLAIGALSARQCVARLYR--ESAMSALSEGAQVW 273
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
LS+LIWR+FYQ ++ PN+ ++ F + + W +D+ + F WC+G TGYP++D+
Sbjct: 274 LSELIWREFYQHLVAIEPNISKSRDFLEWGARLEWWNDS---EKFQRWCEGNTGYPIVDA 330
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW AS+
Sbjct: 331 AMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y + +
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSVL-- 445
Query: 439 GKNYPKPILEHSLSKKNILKRYNFIKN 465
YP P+++H ++ L+ Y K
Sbjct: 446 ---YPAPLVDHKQEREVTLRLYKTAKG 469
>gi|229549977|ref|ZP_04438702.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
gi|312951532|ref|ZP_07770428.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
gi|384513279|ref|YP_005708372.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF]
gi|422692986|ref|ZP_16751001.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031]
gi|422727086|ref|ZP_16783529.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312]
gi|430361362|ref|ZP_19426639.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1X]
gi|430370639|ref|ZP_19429164.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis M7]
gi|229304890|gb|EEN70886.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
gi|310630498|gb|EFQ13781.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
gi|315152445|gb|EFT96461.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031]
gi|315158111|gb|EFU02128.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312]
gi|327535168|gb|AEA94002.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF]
gi|429512539|gb|ELA02144.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1X]
gi|429515403|gb|ELA04919.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis M7]
Length = 477
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 217/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYREQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASM--- 254
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 255 ---PSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFAKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|448506272|ref|ZP_21614382.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 9100]
gi|448525108|ref|ZP_21619526.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 10118]
gi|445699922|gb|ELZ51940.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 9100]
gi|445700080|gb|ELZ52095.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 10118]
Length = 518
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/499 (28%), Positives = 238/499 (47%), Gaps = 60/499 (12%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF+FD ++LD D R+ + + L + + SDL++ + +L
Sbjct: 36 VFVFDPDVLD------HASDVRVRRLLDGLAALRDDYRERGSDLLVARGDPESLLPRLAD 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ + V+ N DY A RD +++ L + ++ D V+ E + I G PYS++
Sbjct: 90 ALDAERVVWNRDYSGLARERDAAVRRALDAVDVAREAHHDAVLHEPDAIRTNAGDPYSVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIIN------------------- 166
S+Y KKW ++ K + P + +LV + L ++
Sbjct: 150 SYYWKKWTDRAKDDPA-----PAPAG-EDLVDADGLADAVDAVDWGDASDAVADGGDADA 203
Query: 167 --------------NNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNIN 211
++ + DLGF + + + +G G + A+ L+ F+ + + Y
Sbjct: 204 GRVTADAGPNGLAVGDLPTPADLGFAEPD-AEIG-PAGTAAARERLDEFLDEAVFAYEAE 261
Query: 212 RNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI---KKHYKTDCIG--YFTWLSQLIWR 266
R+YP+ TS LS L++G I +R+ + K + D + QL WR
Sbjct: 262 RDYPAEEATSRLSAFLKYGEIGVREAYAATEAAMAEAKSDARPDDAPEQVEEFQQQLAWR 321
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
+FY +L+ P VV ++K + I W D + W +G TGYP++D+ + QL
Sbjct: 322 EFYTQVLFHNPEVVTANYKAYEEGIEWRDD---PEEIAAWKRGETGYPIVDAGMRQLREE 378
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
+MHNR+RM+ ASFL K++ +W+ G ++F L D D A++NG WQW+AS+G +QP+F
Sbjct: 379 AFMHNRVRMIVASFLTKDLLADWRHGYDHFREHLADHDTANDNGGWQWAASTGTDAQPYF 438
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
RIFNP+ Q +++D +I+KY+P+L L IH + S + A YP PI
Sbjct: 439 RIFNPMTQGERYDPDAEYIKKYVPELRGLDADLIHEWHELSPTQRANA----APEYPAPI 494
Query: 447 LEHSLSKKNILKRYNFIKN 465
++HS ++ L Y +
Sbjct: 495 VDHSERREEALAMYKRARG 513
>gi|448357813|ref|ZP_21546508.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
gi|445648121|gb|ELZ01083.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
Length = 466
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 239/469 (50%), Gaps = 37/469 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V F+FD +L+ R+ F+ +S+ EL + SDL++ E+ +
Sbjct: 27 VIPAFVFDPAVLE------YASPPRVAFMLESLSELRAWYRERGSDLVVATGDPRDELPR 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ + + ++V N DY A RD+ +++ L G + S D ++FE I + G+ Y
Sbjct: 81 IAREHDAESVSWNRDYSGLASKRDEAVREALTDAGLEATSVDDALLFEPGSITTQQGETY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF--CKS 180
+++S++ KKW ++ K + PV + + +L + + + S LGF ++
Sbjct: 141 AVYSYFWKKWRDREKES-------PVPA-----PNGEQLASVSGDPLPSQEALGFDEPEA 188
Query: 181 NLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
N+ G++ A+ L F I Y R+ P+ + TS LS HL++GTI IR + +
Sbjct: 189 NIPDTGME----AARRRLETFCADPIYRYADQRDDPAADATSGLSPHLKWGTIGIRTVYE 244
Query: 240 LIFKF---IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ + D F SQL WR FY +L P+ V +++ + I W +D
Sbjct: 245 AVERAKSEAPDDATADSCEEFE--SQLAWRAFYAHVLATNPHTVTTNYRSYENPIQWRTD 302
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
A W G TGYP++D+ + QL + +MHNRLRM+ ASFL K++ ++W+ G +F
Sbjct: 303 AAA---LQAWKDGTTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLTKDLLLDWREGYAWF 359
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
KL D D AS+ G WQW++ +G +QP+FRIFNP+ Q ++ D +IR Y+P+L +
Sbjct: 360 REKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHDPDAEYIRTYVPELEDVP 419
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ IH W A E+A + YP PI++H+ ++ ++ + +
Sbjct: 420 AETIHE-WVALEPD-ERASV--APEYPDPIVDHAERRETAIEMFEAARG 464
>gi|440474990|gb|ELQ43705.1| deoxyribodipyrimidine photo-lyase [Magnaporthe oryzae Y34]
gi|440480758|gb|ELQ61406.1| deoxyribodipyrimidine photo-lyase [Magnaporthe oryzae P131]
Length = 639
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 241/458 (52%), Gaps = 37/458 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++F +S+ L +L D L + + +K+ V+ L + + N +YE
Sbjct: 187 RVDFTLRSLEVLRQDLAKLDIPLHVETVDDRRAMKQRVLSLMEEWDASHLYANMEYEVDE 246
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + + L G D + ++ TG+ Y+++S + + W++ + +
Sbjct: 247 LRREANLVRLLAENGKSMEVVHDTCVVPPGKLQTGTGRQYAVYSPWYRAWLKHLSGDPEL 306
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIIS------LNDLGFCKSNLSSLGIKTGASGAKI 196
L+ + N K + + I + +N+ + L+++ G A+
Sbjct: 307 LEPM-EPPHKNPASAREKFSHLFDGKIPAAPKSKQMNEEE--QQRLAAM-WPAGEHEARK 362
Query: 197 LLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI-KKHYKTDCI 254
L+ FIK+ I Y RN+P+ +GTS +S+HL GT+S R V L K +
Sbjct: 363 RLDAFIKRRIDGYAAKRNFPADDGTSSISVHLAAGTLSARTAVHLAHKASGTRKLDGGSQ 422
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNV-----------VNKSFKKEYDNILWESDNYAKKNF 303
G TW+S++ WRDFY+ +L +P V +NK FK EY NI W +Y ++F
Sbjct: 423 GIQTWISEVAWRDFYKHVLVNWPYVCLTSAGSCPHSMNKPFKPEYSNIAW---SYDMEHF 479
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
WC+G TG+P++D+A+ QL +G+MHNR RM+ ASFL K+ I+W+ GE YF L D
Sbjct: 480 AAWCEGRTGFPIVDAAMRQLRGTGWMHNRCRMIVASFLAKDFLIDWRMGERYFMENLVDG 539
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
D ASNNG W ++AS G QP+FR+FNP++QS+KFD G +IRK++P+L + K IH P
Sbjct: 540 DFASNNGGWGFAASVGVDPQPYFRVFNPLLQSEKFDPNGEYIRKWIPELKGIKGKAIHDP 599
Query: 424 W-KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+ + + +K G YPKP+++H ++ LK Y
Sbjct: 600 YGRGCGVEAKKKG------YPKPLVDHKGCRERALKAY 631
>gi|78066957|ref|YP_369726.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
gi|77967702|gb|ABB09082.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
Length = 518
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/427 (31%), Positives = 220/427 (51%), Gaps = 18/427 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L L + L++ A +EI+++V +AV N Y D +
Sbjct: 85 WLHGSLAGLDAALARHGGRLLLLRGDAQREIERVVHDTGAEAVYWNRRYAQPQRDADAAL 144
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K LK G S ++ E E+L +G PY +F+ Y + + + + P+
Sbjct: 145 KASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRA------ARRDRTVAVPLP 198
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGF------CKSNLSSLGIKTGASGAKILLNNFI- 202
H K + + ++L+ L L +GA L+ F+
Sbjct: 199 EPERIAFH--PWPKAVRDCALALDVLALRPPVPDWAGGLRDAWPAPDEAGAHARLDAFLT 256
Query: 203 KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
+ Y R+ P TS LS LRFG +S R++ + +LS+
Sbjct: 257 ASLAGYADARDLPDRPATSRLSPFLRFGNLSPRQVWHAVQGAANAGGAAVAADADKFLSE 316
Query: 263 LIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
L WR+F +LY +P + + +F+ ++D + W D A + W +G TGYPL+D+ + +
Sbjct: 317 LGWREFSYTLLYHFPALASDNFRAQFDAMPWRDDPAALRA---WQRGRTGYPLVDAGLRE 373
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
L ++G+MHNR+RMV ASFLIK++ I+W+ GE +F + L D D A+N +WQW A G +
Sbjct: 374 LWTTGWMHNRVRMVVASFLIKHLLIDWRAGEAWFWDTLVDADPANNAASWQWVAGCGADA 433
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNY 442
P+FRIFNP+ Q +KFD G ++R+++P+L+ L N IH+PW+AS +L+ AG+ LG +Y
Sbjct: 434 APYFRIFNPVAQGQKFDPDGAYVRRWVPELAGLDNASIHAPWEASPLELDAAGVRLGVDY 493
Query: 443 PKPILEH 449
P P++EH
Sbjct: 494 PAPLVEH 500
>gi|257086709|ref|ZP_05581070.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
gi|422722487|ref|ZP_16779037.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137]
gi|424673186|ref|ZP_18110129.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
599]
gi|256994739|gb|EEU82041.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
gi|315027232|gb|EFT39164.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137]
gi|402352996|gb|EJU87832.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
599]
Length = 477
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 217/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYREQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFINQKLRSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELAS---- 253
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 254 --APSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFAKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|400602074|gb|EJP69699.1| DNA photolyase [Beauveria bassiana ARSEF 2860]
Length = 587
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 154/445 (34%), Positives = 240/445 (53%), Gaps = 33/445 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++FI +++ L +L D L + ++ V++L + + N +YE
Sbjct: 148 RVDFILRTLKVLKEDLAKLDIPLYVETVEERTKVPARVLELLESWGCNHLCANLEYEVDE 207
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ I + L F + D + ++ + TG Y++++ + + W+ + SN
Sbjct: 208 LRRETKIIRLLAANSKSFEAVHDTCVVPPGQLRSGTGNQYAVYTPWYRAWMAHIHSNLDL 267
Query: 143 LQSY--PVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK-------TGASG 193
L+ + P K N + K+ I + LS+ K G
Sbjct: 268 LELHDAPPK---NPASARKRFQKLFECEIPAAPK----GKALSAEEQKRFHSLWPCGEHE 320
Query: 194 AKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK-KHYKT 251
AK L+ F + +I Y+ RN PS NGT+ +S+HL GTIS R V+ K K +
Sbjct: 321 AKARLDKFCEERIGGYSQQRNLPSQNGTASISVHLASGTISARTCVRTARDRNKSKKLDS 380
Query: 252 DCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGY 310
G W+S++ WRDFY+ +L +P++ +NK FK +Y +I W +Y ++F WC+G
Sbjct: 381 GHEGIKVWISEIAWRDFYRHVLVRWPHICMNKPFKPDYADIEW---SYNTEHFNAWCEGK 437
Query: 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNG 370
TG+P++D+A+ QLN GYMHNR RMV ASFL K++ I+W+ GE YF L D D ASNNG
Sbjct: 438 TGFPIVDAAMRQLNHMGYMHNRPRMVVASFLCKDLLIDWRMGEKYFMEHLIDGDFASNNG 497
Query: 371 NWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW-KASSY 429
W +SAS G QP+FRIFNP+ QS++FD G +IR+++P+L L NK IH P+ + +
Sbjct: 498 GWGFSASVGVDPQPYFRIFNPLRQSERFDPDGDYIRQWVPELKDLDNKQIHDPYNRGAGD 557
Query: 430 KLEKAGIILGKNYPKPILEHSLSKK 454
K +K G YPKPI+EHS ++
Sbjct: 558 KAKKNG------YPKPIVEHSECRE 576
>gi|293397249|ref|ZP_06641522.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
gi|291420269|gb|EFE93525.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
Length = 476
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/452 (30%), Positives = 239/452 (52%), Gaps = 30/452 (6%)
Query: 20 QGIIEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMIN 75
Q + R+ FI ++ +L L L+ + +A A + ++DA+ N
Sbjct: 44 QHHMAARQAAFIHATLRQLQQALAQRGIPLVTQQCDDFAAAVDWLADFCQASHVDALFYN 103
Query: 76 HDYEPQAIIRDKLIKKEL-KVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIE 134
YE RD+ +++ L ++ C+ F D ++ +L+ G+ Y +++ +++ ++
Sbjct: 104 RQYELNERRRDRQLEQRLNGMVNCQAFD--DSLLLPPGSVLSGNGEMYKMYTPFRRAFLA 161
Query: 135 KVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGA 194
++ + P + I + + L G G A
Sbjct: 162 RLAESDIASLPAPAQRSCGQW-----------QAITPPAPFDYPAAELDD-GFPAGEEAA 209
Query: 195 KILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
L +F ++ +++Y+ R+ P+++GTS LS +L G +S R+ V +
Sbjct: 210 LRRLRHFCRQQVQDYHHQRDIPAVDGTSVLSPYLAVGALSPRQCVNRLRAECPDMLANPH 269
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
G F WL++LIWR+FY+ +L P + ++ F D + W N A NFL W +G TG
Sbjct: 270 GGAFCWLNELIWREFYRHLLVANPALCRHRPFIAWTDRVRW---NPAADNFLAWQQGRTG 326
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
YP++D+A+ QLN +G+MHNRLRM+ ASFL+K++ I+W+ GE YF ++L D DLA+NNG W
Sbjct: 327 YPIVDAAMRQLNQTGWMHNRLRMIAASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGW 386
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QW+AS+G + P+FRIFNP Q K+FD QG FIRK+LP+L+ + + +H P + + E
Sbjct: 387 QWAASTGTDAAPYFRIFNPTTQGKRFDPQGSFIRKWLPELADVPDNELHQPHRWA----E 442
Query: 433 KAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
K +L +YP PI++H ++ L ++ K
Sbjct: 443 KQQRVL--DYPLPIVDHPQARLATLAAFDAAK 472
>gi|441504075|ref|ZP_20986072.1| Deoxyribodipyrimidine photolyase [Photobacterium sp. AK15]
gi|441428248|gb|ELR65713.1| Deoxyribodipyrimidine photolyase [Photobacterium sp. AK15]
Length = 485
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 241/448 (53%), Gaps = 27/448 (6%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR+ + + E+ I L + + + A+K + + K ++ V N YE R
Sbjct: 59 RRLGVLRSQLAEIGIPLLINE---VADFEEAAKSVCEQAQKHQVNHVYCNKQYEWNEQKR 115
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
D++ L G KF ++ D I E ++ K G PY +F+ ++K+W+ + +QS
Sbjct: 116 DEITGHLLSEQGIKFSAFDDACIIEPGKVQTKNGDPYKVFTPFRKEWLRLFRLAMPKVQS 175
Query: 146 YP-VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-K 203
P VK V S +++ I +L + K + SL + L F +
Sbjct: 176 VPQVKKESETSVSSLSEALFVHDKI----ELTYPKKD--SLQWPVDEDAIRQRLRTFCSE 229
Query: 204 KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
K + Y+ R+ P+I+GTS LS +L G +S R+ V + + + G F+WL+++
Sbjct: 230 KAQIYHEQRDIPAIDGTSCLSPYLTHGALSPRQCVSALLEVFPHCFDEPESGAFSWLNEI 289
Query: 264 IWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
IWR+FY+ ++ +P + ++ F+ NI W ++ + W +G TG+P++D+A+ Q
Sbjct: 290 IWREFYRHLMVAFPRLSRDQPFQSWTRNISWRQ---SESDLAAWQQGRTGFPIVDAAMRQ 346
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
L +G+MHNRLRM+TASFL K++ INW+ GE +F ++L D DLA+NNG WQW+AS+G +
Sbjct: 347 LKETGWMHNRLRMITASFLTKDLLINWREGERWFMSQLVDGDLAANNGGWQWAASTGTDA 406
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP--WKASSYKLEKAGIILGK 440
QP+FR+FNP Q ++FD G FIR ++ +L + +K+IH P W + +
Sbjct: 407 QPYFRVFNPTTQGERFDPDGKFIRTWVHELKDVPDKFIHQPHSWPGA----------VQI 456
Query: 441 NYPKPILEHSLSKKNILKRYNFIKNILN 468
NYP PI++H ++ ++ + K L
Sbjct: 457 NYPAPIVDHKSARLAAIEAFKIAKEQLE 484
>gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
Length = 473
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 220/387 (56%), Gaps = 30/387 (7%)
Query: 85 RDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS--NKCY 142
RD IK+ ++ G S++D + + E+ + G Y F+ Y KKWI+ K K
Sbjct: 109 RDLYIKELVEKKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQA 168
Query: 143 LQSYPVKSYLNNLVH----SSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
L + + ++ H ++ L K++ N K++ S++ G A L
Sbjct: 169 L-DFEKSVHFDDAPHFKAGTALLAKLLENR----------KTDFSTI---VGEDYAHKQL 214
Query: 199 NNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F+ K++ Y +R+ PSI GTS LS L FG ISIRK+ + G
Sbjct: 215 QAFVQKRLAAYEKDRDIPSIKGTSRLSPFLSFGQISIRKV------WAACQGMPSSTGKA 268
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
T+L +L WRDFY MI + +P N ++Y N+ W + ++ W G TGYP+ID
Sbjct: 269 TFLKELAWRDFYHMIYFSHPEQKNYELIEKYRNMDWRKN---EEELTKWQAGQTGYPIID 325
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+ GE YFA +L D+D ASN G WQW+AS
Sbjct: 326 AAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAAS 385
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G + P+FRIFNPI Q KKFD G FI++++P+L++L K+IH P+ + + ++
Sbjct: 386 TGTDAVPYFRIFNPITQGKKFDKDGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVV 445
Query: 438 LGKNYPKPILEHSLSKKNILKRYNFIK 464
LG +YP PI++H+ ++K L Y+ I+
Sbjct: 446 LGTDYPLPIVDHNEARKRALDLYSKIE 472
>gi|254448088|ref|ZP_05061551.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
gi|198262214|gb|EDY86496.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
Length = 486
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/444 (31%), Positives = 231/444 (52%), Gaps = 35/444 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIK----LNIDAVMINHDYEPQA 82
+++FI + + L L Y + ++ +L+++ NI + N +Y
Sbjct: 57 QVDFILRHLPILQTQLARYQIPFRVWVCDDFSQVPELLLEQCQNWNIQQLFANREYPVNE 116
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
I RD+ + + L+ + + D + + G PY +F+ ++K+ C+
Sbjct: 117 IQRDQRVARTLESTSIETHFFDDFTLLAPGSVRTGQGDPYKVFTPFKKQ---------CF 167
Query: 143 --LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK----TGASGAKI 196
LQ + + + + SL D +L + ++ G S A
Sbjct: 168 KQLQEADIAEAPTARIEAEAPSHFAQSPPESLADFA---PHLDTKTLEHLWPAGESAALE 224
Query: 197 LLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIG 255
L F + ++ +Y R+YP+ GTS +S +L G++S R ++ + + + + G
Sbjct: 225 RLETFAEHRLHHYQQRRDYPNAKGTSAISAYLAIGSLSPRAAMRAATRANQGEWTSGSEG 284
Query: 256 YFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314
TW+S+L+WRDFYQ IL +P V ++F+ +NI+W D A F WC+G TG P
Sbjct: 285 AQTWISELLWRDFYQHILTAFPRVSRGRAFQPHTENIVWRDDPEA---FQAWCEGRTGIP 341
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
++D+A+ QL +G+MHNRLRMVTA FL KN+ I+W+ GE YF +L D +L +NNG WQW
Sbjct: 342 IVDAAMRQLLQTGWMHNRLRMVTAMFLSKNLLIDWRRGEQYFRRQLIDGELGANNGGWQW 401
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
+AS+G + P+FRIFNP+ Q ++FD G FIR Y+P+L L NKY+H PW
Sbjct: 402 AASTGTDAAPYFRIFNPVTQGQRFDKDGAFIRHYVPELKDLPNKYLHEPWTHPDAD---- 457
Query: 435 GIILGKNYPKPILEHSLSKKNILK 458
+YP+PI++ LS++ ++
Sbjct: 458 ----QLDYPQPIVDLKLSRQRAIE 477
>gi|256965091|ref|ZP_05569262.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
gi|307273190|ref|ZP_07554436.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
gi|256955587|gb|EEU72219.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
gi|306510175|gb|EFM79199.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
Length = 477
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 218/397 (54%), Gaps = 22/397 (5%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTG 190
KW E K PV SY + S+ L + S+G KT
Sbjct: 152 KWKEAPKETPI-----PV-SYTAEKIFSACL--FPEEEAAYREQIARIPLTHYSVGEKT- 202
Query: 191 ASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHY 249
A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 203 ---ARRCLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASV----- 254
Query: 250 KTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKG 309
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W KG
Sbjct: 255 -PSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND---PEMFAKWQKG 310
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+N
Sbjct: 311 ETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNI 370
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSY 429
G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 371 GGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEA 430
Query: 430 KLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 431 LQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|419066931|ref|ZP_13613517.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3E]
gi|424269007|ref|ZP_17894083.1| deoxyribodipyrimidine photolyase [Escherichia coli PA28]
gi|424579522|ref|ZP_18019463.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1863]
gi|425370990|ref|ZP_18755956.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1864]
gi|425383775|ref|ZP_18767658.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1866]
gi|425390473|ref|ZP_18773935.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1868]
gi|425396593|ref|ZP_18779642.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1869]
gi|425402584|ref|ZP_18785191.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1870]
gi|444929377|ref|ZP_21248524.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0814]
gi|444934693|ref|ZP_21253628.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0815]
gi|444940272|ref|ZP_21258914.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0816]
gi|444994835|ref|ZP_21311427.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA13]
gi|377920201|gb|EHU84227.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3E]
gi|390736222|gb|EIO07564.1| deoxyribodipyrimidine photolyase [Escherichia coli PA28]
gi|390924465|gb|EIP82223.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1863]
gi|408300401|gb|EKJ18101.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1864]
gi|408316818|gb|EKJ33072.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1868]
gi|408317420|gb|EKJ33656.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1866]
gi|408331091|gb|EKJ46292.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1869]
gi|408337828|gb|EKJ52511.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1870]
gi|444542067|gb|ELV21464.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0814]
gi|444551509|gb|ELV29438.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0815]
gi|444566690|gb|ELV43495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0816]
gi|444613944|gb|ELV88187.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA13]
Length = 472
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/448 (32%), Positives = 241/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSTSLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRNVPGKSVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|256762534|ref|ZP_05503114.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
gi|256683785|gb|EEU23480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
Length = 473
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 218/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 88 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 147
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 148 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYREQIARIPLTHYS 193
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 194 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASV--- 250
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F+ W
Sbjct: 251 ---PSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND---PEMFVKWQ 304
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 305 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 364
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 365 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMN 424
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 425 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 463
>gi|172058000|ref|YP_001814460.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
255-15]
gi|171990521|gb|ACB61443.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
255-15]
Length = 451
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/438 (34%), Positives = 235/438 (53%), Gaps = 38/438 (8%)
Query: 25 DRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDY-EPQAI 83
D R ++ F+++ + N + +D + IR+ I +E L D ++ N +Y EP
Sbjct: 49 DARQQYFFQALEHFAKNCKTHD--MPIRF-IEGQEKDFLEATEMADVLLFNAEYVEPFKS 105
Query: 84 IRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYL 143
D ++KK + D+ + + + G Y +F+ Y+ +++K
Sbjct: 106 RDDGIMKKRGDKKTERLL---DRHLLHPHAVKKNDGSYYKVFTPYKNAFLKKDVD----- 157
Query: 144 QSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK 203
+ YPVK LN L + HK NN L+ + K S G A+ L +F+K
Sbjct: 158 KPYPVK--LNLL--KERYHKRRQNNAFMLD---YFKRAASDTDFAVGEETARKRLRSFLK 210
Query: 204 K-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
+ Y R+ P+++GTS +S +LR G I IR IF +++ + D G T+L++
Sbjct: 211 NNLSAYEEQRDLPAVDGTSLMSRYLRTGEIGIR----TIFDAVQQ--EQDSKGKQTYLTE 264
Query: 263 LIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
LIWR+FY IL YP ++Y I WE+D +K F W +G TGYP++D+A+ Q
Sbjct: 265 LIWREFYYTILMHYPESKRLPVNEQYTKIEWETD---EKGFKAWAEGKTGYPIVDAAMRQ 321
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
LN++G+MHNRLRM+ ASFL K++ ++W+ GE YF KL D++ ASN G WQW+AS G +
Sbjct: 322 LNTTGWMHNRLRMIVASFLTKDLLVDWQKGERYFQQKLVDYEAASNIGGWQWAASVGTDA 381
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNY 442
P+FR+FNP QSKKFD G FIR YLP+L L IH P + +Y
Sbjct: 382 VPYFRVFNPTTQSKKFDKDGTFIRTYLPELKDLPKTSIHEPTEQQRKDY---------DY 432
Query: 443 PKPILEHSLSKKNILKRY 460
P PI+EH +++K + R+
Sbjct: 433 PMPIVEHDMARKRAIARF 450
>gi|422695016|ref|ZP_16753004.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244]
gi|315147299|gb|EFT91315.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244]
Length = 477
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 217/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELAS---- 253
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 254 --APSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFAKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|425287290|ref|ZP_18678214.1| deoxyribodipyrimidine photolyase [Escherichia coli 3006]
gi|432530039|ref|ZP_19767080.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE233]
gi|408218054|gb|EKI42287.1| deoxyribodipyrimidine photolyase [Escherichia coli 3006]
gi|431056782|gb|ELD66275.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE233]
Length = 472
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/445 (32%), Positives = 242/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDLEGEFIRQWLPELRNVPGKSVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|417230088|ref|ZP_12031674.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0959]
gi|386206578|gb|EII11084.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0959]
Length = 472
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 238/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM++ASFL+K + I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMISASFLVKELLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|419079052|ref|ZP_13624534.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4A]
gi|377933159|gb|EHU97004.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4A]
Length = 472
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 144/448 (32%), Positives = 241/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRNVPGKSVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|113969509|ref|YP_733302.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4]
gi|113884193|gb|ABI38245.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4]
Length = 493
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 231/431 (53%), Gaps = 25/431 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I+FI + + L+ L + + + + KE+ + KL ++ V + E
Sbjct: 63 QIDFIQRHVNLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINE 122
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ +G + + +LN +G Y +F+ + +KW E V + +
Sbjct: 123 QKRDQACLD----VGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWRE-VAAKRAI 177
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLND-LGFCKSNLSSLGIKTGASGAKILLNNF 201
L V + L ++ K IS + F SS G AK +L F
Sbjct: 178 L-PLAVPAPLGPMLPEPK--------PISFKERFPFTSKLTSSEQWAAGEGQAKRILTAF 228
Query: 202 IK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
I+ K ++Y +R++P++ GTS +S +L G +S R+ + + + D TWL
Sbjct: 229 IQQKAQDYKQDRDFPALEGTSVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWL 288
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++LIWR+FY+ +L +P++ +F ++ D++ W ++ + FL WC+G TGYP++D+A
Sbjct: 289 NELIWREFYRHLLVAFPDLSKGHNFNRQADHVQWRNN---QAEFLAWCEGKTGYPIVDAA 345
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QLN +G+MHNRLRMV ASFL K++ I+W+WGE YF L D DLA+NNG WQWSA G
Sbjct: 346 MRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCG 405
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP-WKASSYKLEKAGIIL 438
C +QP+FRIFNPI QS+KFD G FIRKYLP+L+ K +H P + + E +
Sbjct: 406 CDAQPYFRIFNPISQSEKFDPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEVPTLES 465
Query: 439 GKNYPKPILEH 449
YP I+EH
Sbjct: 466 DSAYPYAIVEH 476
>gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
Length = 481
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 239/466 (51%), Gaps = 21/466 (4%)
Query: 3 VYCVFIFDKN--ILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
V C +++D L PL ++ +S+ L L L+IR ++K I
Sbjct: 32 VICCYVYDTESAALRPLGGASRW------WLAQSLRALQDELDALGVKLVIRRGPSAKAI 85
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
+L + + AV N + ++ L IG K + D ++ + E+ K G+
Sbjct: 86 SELAREASTSAVYWNDVAQTGPRAVAAEVEAALDAIGVKSRVFADDLLIDPAELRGKDGR 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
+F+ + K+ + K PV+ + V S + K+ S + G ++
Sbjct: 146 GPRVFTPFWKRVLALGDPPKPL--PVPVRLSSPSGVASLTVDKLALEPT-SPDWAGGLRT 202
Query: 181 NLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
+ G A+ L F++ ++ Y +R+ P I TS LS HLRFG IS R++
Sbjct: 203 TW-----RAGERAAQARLAKFLETTVRGYAADRDRPDIEATSRLSPHLRFGEISPRQIWH 257
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+F + G +LS+L WR+F + +L+ P++ ++ + +D W D A
Sbjct: 258 AA-RFAAEQQPAFARGIDKFLSELGWREFSRHLLFNNPDLATRNLQPSFDAFPWSQDAAA 316
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ W +G TGYP++D+ + +L +G MHNR+RMV AS L+K++ I+W+ GE +F +
Sbjct: 317 LRA---WQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKHLLIDWRLGEQWFWDT 373
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D D SN +WQW A SG + P+FR+FNP++Q +KFD G ++R+++P+L++L
Sbjct: 374 LVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDSSGTYVRRWVPELARLPAAL 433
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH PW A +L +AG++LG++YP P+++H ++ L Y ++
Sbjct: 434 IHQPWAAKPLELAEAGVVLGRSYPAPVVDHRHGRERALAAYASLRT 479
>gi|452844325|gb|EME46259.1| hypothetical protein DOTSEDRAFT_42802 [Dothistroma septosporum
NZE10]
Length = 598
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/473 (33%), Positives = 256/473 (54%), Gaps = 37/473 (7%)
Query: 5 CVFI-----FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE 59
CVF+ + ++ P R E R +E + + + L I L Y + + R + K
Sbjct: 129 CVFVVSPQDYQAHLTSPARVD--FELRSLEIMKQDLAGLDIPL--YMTTIEDRRDVIPKI 184
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRD-KLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
+ K + + N +YE + R+ KL+K LK G + D I E+
Sbjct: 185 LSKCA-EWGAKHLFCNIEYEVDELRRETKLVKAGLKQ-GIAIEAVHDDSIVAPGELKTGG 242
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
GK YS++S + + W++ + + L + S N + + ++I + I +
Sbjct: 243 GKQYSVYSPWFRAWVKHIHEHPHLLNPFDTPS--QNPASAREKFRLIFD--ICIPTAPAN 298
Query: 179 KSNLSSLGIK------TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGT 231
KS L + G A+ L+ F+ KI Y RN+P++ T+ LS+H GT
Sbjct: 299 KSILQEEKERFLHLWPAGEHEARQRLDRFLNDKIGKYKDTRNFPTLQSTASLSVHFSAGT 358
Query: 232 ISIRKLVKLIFKFIKKHYKTDC--IGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEY 288
++ R V+ + + K D G TW+S++ WRDFY+ +L +P V ++K FK EY
Sbjct: 359 LAARTAVRSA-RDVNSTKKLDGGNPGITTWISEVAWRDFYKHVLAHWPYVCMHKPFKYEY 417
Query: 289 DNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGIN 348
+I WE D+ + F WC+G TG+P++D+A+ QLN+ +MHNR RM+ ASFL K++ ++
Sbjct: 418 ADIEWEYDD---EQFKRWCEGNTGFPIVDAAMRQLNNMAHMHNRCRMIVASFLAKDLLLD 474
Query: 349 WKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKY 408
W+ GE YF L D D ASNNG W +SAS+G QP+FRIFNP++QS+KFD G +IRK+
Sbjct: 475 WRMGEKYFMEHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNPLLQSEKFDEGGDYIRKW 534
Query: 409 LPQLSKLSNKYIHSPW-KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+P+L+K+ K IH+P+ + + EKAG YPKP+++H +++ L RY
Sbjct: 535 VPELAKIEGKSIHAPYERGKGKEAEKAG------YPKPMVDHKQAREKALARY 581
>gi|315281208|ref|ZP_07869885.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120]
gi|313615150|gb|EFR88618.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120]
Length = 467
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 147/411 (35%), Positives = 229/411 (55%), Gaps = 30/411 (7%)
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
+++K+ V N V N D RD ++ + ++ D + E+
Sbjct: 78 QQLKEAVPTWN--KVFFNRDETGYGASRDAAAQQFFDERQIEVHAFHDSYLHSAEEVKKS 135
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYL--NNLVHSSKLHKIINNNIISLNDL 175
+ Y IF+ Y KKW E++K P+K L N+ S K ++DL
Sbjct: 136 PTEYYKIFTPYYKKWREEMKE-------MPLKVTLKPENIRKESLFPKYEEQFAEIVHDL 188
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISI 234
+ G A L +FIK+ + +Y+ R++P ++ TS+LS +LR G ISI
Sbjct: 189 PVSDA---------GEQAANARLASFIKEDLTDYDKARDFPELDKTSHLSRYLRTGEISI 239
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
R I++ +++ T+ G T+ +L WRDFY MI +P+ N+ ++ Y I WE
Sbjct: 240 R----TIWQALQQTEATE--GRATFEKELCWRDFYNMIYVSFPDQKNEPIQENYRYIEWE 293
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
+ ++ F W +G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE
Sbjct: 294 N---SRAFFKCWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEK 350
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF L D+D ASN G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L+
Sbjct: 351 YFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPAGKFIRKYVKELAH 410
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ +K+IH P K S + + G+++GK+YP PI++H +K + RY F K
Sbjct: 411 IPDKFIHQPEKMSEKEQNEYGLLVGKDYPLPIVDHKERRKLAIARYEFSKE 461
>gi|254786801|ref|YP_003074230.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
gi|237686103|gb|ACR13367.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
Length = 465
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 154/446 (34%), Positives = 237/446 (53%), Gaps = 35/446 (7%)
Query: 19 SQGIIEDRRIEFIFKSIIELSINLQNYDSDLII----RYAIASKEIKKLVIKLNIDAVMI 74
S+ + +I I + + +L L LII + E+K K NI AV
Sbjct: 39 SEHRLSPAKISLICRQLEKLESALAALHVPLIIIPCSNFKRVPGELKSFAAKHNISAVYF 98
Query: 75 NHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIE 134
NH++E + K + EL+ +S+ DQ ++ + Y +F+ ++K+++
Sbjct: 99 NHEFEINERLLSKRVIAELQP-HIDTWSFNDQCAIAPGKLKTGSDDWYKVFTPFKKRYLA 157
Query: 135 KVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF--CKSNLSSLGIKTGAS 192
+ S + YP + I ++I L + F C NL G
Sbjct: 158 EFSSMARAV--YPTPKAQKKIP--------ITSSIAPLQQVQFESCWQNL----WPAGED 203
Query: 193 GAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKT 251
A L+ F K + Y+ +R++P+++GTS LS +L G IS R+ + +
Sbjct: 204 EAHRRLHRFGKDGMSRYHEDRDFPAVDGTSTLSPYLAVGAISTRQCMDAAIQQGGMENDQ 263
Query: 252 DCIGYFTWLSQLIWRDFYQMILYCYPNVVN-KSFKKEYDNILWESDNYAKKNFLNWCKGY 310
G TWLS+L+WRDFY+ +LY YP++ K+F++ + + W D+ + W +G
Sbjct: 264 STQGAQTWLSELVWRDFYRHLLYGYPDLCKFKAFQQNTERLPWRHDS---RLLTAWQEGR 320
Query: 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNG 370
TG+P++D+A+ QL +G+MHNRLRM+TA FL K++ ++W+ GE++F L D DLASNNG
Sbjct: 321 TGFPIVDAAMKQLVQTGWMHNRLRMITAMFLTKHLFVDWRLGEDFFMQHLVDGDLASNNG 380
Query: 371 NWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYK 430
WQWSAS+G + P+FRIFNP QS++FD G FIR YLP+L LSNK IHSP S +
Sbjct: 381 GWQWSASTGVDAAPYFRIFNPTRQSERFDPNGEFIRHYLPELKNLSNKAIHSP---SVIE 437
Query: 431 LEKAGIILGKNYPKPILEHSLSKKNI 456
E G YPKPI++HS + K
Sbjct: 438 AESCG------YPKPIVDHSTAVKQT 457
>gi|15829987|ref|NP_308760.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
Sakai]
gi|168750637|ref|ZP_02775659.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4113]
gi|168757158|ref|ZP_02782165.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4401]
gi|168763986|ref|ZP_02788993.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4501]
gi|168767146|ref|ZP_02792153.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4486]
gi|168777031|ref|ZP_02802038.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4196]
gi|168779189|ref|ZP_02804196.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4076]
gi|168786859|ref|ZP_02811866.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC869]
gi|168801385|ref|ZP_02826392.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC508]
gi|195939049|ref|ZP_03084431.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4024]
gi|208809646|ref|ZP_03251983.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4206]
gi|208815503|ref|ZP_03256682.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4045]
gi|208822977|ref|ZP_03263295.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4042]
gi|209397896|ref|YP_002269331.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4115]
gi|217325709|ref|ZP_03441793.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
TW14588]
gi|254791854|ref|YP_003076691.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
TW14359]
gi|261224409|ref|ZP_05938690.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli O157:H7 str. FRIK2000]
gi|261254600|ref|ZP_05947133.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli O157:H7 str. FRIK966]
gi|387881268|ref|YP_006311570.1| deoxyribodipyrimidine photolyase [Escherichia coli Xuzhou21]
gi|416312802|ref|ZP_11657823.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1044]
gi|416317057|ref|ZP_11660189.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC1212]
gi|416325373|ref|ZP_11665781.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1125]
gi|416781458|ref|ZP_11877237.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
G5101]
gi|416792666|ref|ZP_11882132.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str.
493-89]
gi|416803982|ref|ZP_11887003.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H
2687]
gi|416835836|ref|ZP_11901566.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
LSU-61]
gi|419043757|ref|ZP_13590730.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3A]
gi|419049304|ref|ZP_13596221.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3B]
gi|419055364|ref|ZP_13602219.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3C]
gi|419060961|ref|ZP_13607743.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3D]
gi|419078113|ref|ZP_13623608.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3F]
gi|419084678|ref|ZP_13630091.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4B]
gi|419090818|ref|ZP_13636136.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4C]
gi|419096358|ref|ZP_13641602.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4D]
gi|419102440|ref|ZP_13647606.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4E]
gi|419107789|ref|ZP_13652899.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4F]
gi|420270230|ref|ZP_14772589.1| deoxyribodipyrimidine photolyase [Escherichia coli PA22]
gi|420273757|ref|ZP_14776090.1| deoxyribodipyrimidine photolyase [Escherichia coli PA40]
gi|420279041|ref|ZP_14781307.1| deoxyribodipyrimidine photolyase [Escherichia coli TW06591]
gi|420285211|ref|ZP_14787428.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10246]
gi|420290839|ref|ZP_14793003.1| deoxyribodipyrimidine photolyase [Escherichia coli TW11039]
gi|420297852|ref|ZP_14799919.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09109]
gi|420302634|ref|ZP_14804663.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10119]
gi|420308158|ref|ZP_14810130.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1738]
gi|420313713|ref|ZP_14815619.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1734]
gi|421810938|ref|ZP_16246740.1| deoxyribodipyrimidine photolyase [Escherichia coli 8.0416]
gi|421817014|ref|ZP_16252572.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0821]
gi|421822407|ref|ZP_16257844.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK920]
gi|421829140|ref|ZP_16264468.1| deoxyribodipyrimidine photolyase [Escherichia coli PA7]
gi|423659310|ref|ZP_17634564.1| deoxyribodipyrimidine photolyase [Escherichia coli PA31]
gi|424075572|ref|ZP_17812926.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA505]
gi|424081905|ref|ZP_17818770.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA517]
gi|424088530|ref|ZP_17824793.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1996]
gi|424094747|ref|ZP_17830506.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1985]
gi|424101154|ref|ZP_17836320.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1990]
gi|424107958|ref|ZP_17842543.1| deoxyribodipyrimidine photolyase [Escherichia coli 93-001]
gi|424113948|ref|ZP_17848107.1| deoxyribodipyrimidine photolyase [Escherichia coli PA3]
gi|424120006|ref|ZP_17853725.1| deoxyribodipyrimidine photolyase [Escherichia coli PA5]
gi|424126260|ref|ZP_17859469.1| deoxyribodipyrimidine photolyase [Escherichia coli PA9]
gi|424132359|ref|ZP_17865167.1| deoxyribodipyrimidine photolyase [Escherichia coli PA10]
gi|424138901|ref|ZP_17871203.1| deoxyribodipyrimidine photolyase [Escherichia coli PA14]
gi|424145340|ref|ZP_17877118.1| deoxyribodipyrimidine photolyase [Escherichia coli PA15]
gi|424151479|ref|ZP_17882741.1| deoxyribodipyrimidine photolyase [Escherichia coli PA24]
gi|424185264|ref|ZP_17888180.1| deoxyribodipyrimidine photolyase [Escherichia coli PA25]
gi|424423724|ref|ZP_17899811.1| deoxyribodipyrimidine photolyase [Escherichia coli PA32]
gi|424453886|ref|ZP_17905431.1| deoxyribodipyrimidine photolyase [Escherichia coli PA33]
gi|424460197|ref|ZP_17911134.1| deoxyribodipyrimidine photolyase [Escherichia coli PA39]
gi|424466669|ref|ZP_17916865.1| deoxyribodipyrimidine photolyase [Escherichia coli PA41]
gi|424473225|ref|ZP_17922908.1| deoxyribodipyrimidine photolyase [Escherichia coli PA42]
gi|424479171|ref|ZP_17928423.1| deoxyribodipyrimidine photolyase [Escherichia coli TW07945]
gi|424485237|ref|ZP_17934109.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09098]
gi|424491394|ref|ZP_17939768.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09195]
gi|424498450|ref|ZP_17945732.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4203]
gi|424504677|ref|ZP_17951463.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4196]
gi|424510946|ref|ZP_17957179.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14313]
gi|424518509|ref|ZP_17962941.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14301]
gi|424524335|ref|ZP_17968366.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4421]
gi|424530536|ref|ZP_17974172.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4422]
gi|424536510|ref|ZP_17979782.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4013]
gi|424542426|ref|ZP_17985249.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4402]
gi|424548745|ref|ZP_17990959.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4439]
gi|424555007|ref|ZP_17996733.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4436]
gi|424561355|ref|ZP_18002650.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4437]
gi|424567386|ref|ZP_18008309.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4448]
gi|424573572|ref|ZP_18014004.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1845]
gi|425096200|ref|ZP_18499231.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4870]
gi|425102344|ref|ZP_18504996.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.2239]
gi|425108136|ref|ZP_18510394.1| deoxyribodipyrimidine photolyase [Escherichia coli 6.0172]
gi|425123965|ref|ZP_18525550.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0586]
gi|425130005|ref|ZP_18531111.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.2524]
gi|425136345|ref|ZP_18537076.1| deoxyribodipyrimidine photolyase [Escherichia coli 10.0833]
gi|425142243|ref|ZP_18542538.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0869]
gi|425148557|ref|ZP_18548459.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.0221]
gi|425154175|ref|ZP_18553730.1| deoxyribodipyrimidine photolyase [Escherichia coli PA34]
gi|425160625|ref|ZP_18559805.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA506]
gi|425166140|ref|ZP_18564956.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA507]
gi|425172426|ref|ZP_18570830.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA504]
gi|425178315|ref|ZP_18576375.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1999]
gi|425184457|ref|ZP_18582089.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1997]
gi|425191217|ref|ZP_18588351.1| deoxyribodipyrimidine photolyase [Escherichia coli NE1487]
gi|425197543|ref|ZP_18594197.1| deoxyribodipyrimidine photolyase [Escherichia coli NE037]
gi|425204202|ref|ZP_18600336.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK2001]
gi|425209954|ref|ZP_18605695.1| deoxyribodipyrimidine photolyase [Escherichia coli PA4]
gi|425215999|ref|ZP_18611324.1| deoxyribodipyrimidine photolyase [Escherichia coli PA23]
gi|425222574|ref|ZP_18617438.1| deoxyribodipyrimidine photolyase [Escherichia coli PA49]
gi|425228813|ref|ZP_18623215.1| deoxyribodipyrimidine photolyase [Escherichia coli PA45]
gi|425235115|ref|ZP_18629081.1| deoxyribodipyrimidine photolyase [Escherichia coli TT12B]
gi|425241116|ref|ZP_18634756.1| deoxyribodipyrimidine photolyase [Escherichia coli MA6]
gi|425252966|ref|ZP_18645848.1| deoxyribodipyrimidine photolyase [Escherichia coli CB7326]
gi|425259282|ref|ZP_18651650.1| deoxyribodipyrimidine photolyase [Escherichia coli EC96038]
gi|425265382|ref|ZP_18657308.1| deoxyribodipyrimidine photolyase [Escherichia coli 5412]
gi|425292839|ref|ZP_18683422.1| deoxyribodipyrimidine photolyase [Escherichia coli PA38]
gi|425309567|ref|ZP_18699037.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1735]
gi|425315490|ref|ZP_18704570.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1736]
gi|425321554|ref|ZP_18710228.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1737]
gi|425327745|ref|ZP_18715969.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1846]
gi|425333927|ref|ZP_18721651.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1847]
gi|425340342|ref|ZP_18727588.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1848]
gi|425346216|ref|ZP_18733021.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1849]
gi|425352442|ref|ZP_18738826.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1850]
gi|425358435|ref|ZP_18744411.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1856]
gi|425364539|ref|ZP_18750090.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1862]
gi|425409124|ref|ZP_18791280.1| deoxyribodipyrimidine photolyase [Escherichia coli NE098]
gi|425415404|ref|ZP_18797044.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK523]
gi|425426543|ref|ZP_18807595.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1304]
gi|428945224|ref|ZP_19017861.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1467]
gi|428951371|ref|ZP_19023495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1042]
gi|428957226|ref|ZP_19028913.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 89.0511]
gi|428963540|ref|ZP_19034726.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0091]
gi|428969740|ref|ZP_19040370.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0039]
gi|428976192|ref|ZP_19046361.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.2281]
gi|428981910|ref|ZP_19051641.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0055]
gi|428988151|ref|ZP_19057441.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0056]
gi|428993967|ref|ZP_19062873.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 94.0618]
gi|429000080|ref|ZP_19068584.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0183]
gi|429006325|ref|ZP_19074229.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.1288]
gi|429012647|ref|ZP_19079899.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0943]
gi|429018852|ref|ZP_19085631.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0428]
gi|429024543|ref|ZP_19090950.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0427]
gi|429030863|ref|ZP_19096737.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0939]
gi|429037051|ref|ZP_19102486.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0932]
gi|429043012|ref|ZP_19108012.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0107]
gi|429048748|ref|ZP_19113404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0003]
gi|429054121|ref|ZP_19118608.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.1742]
gi|429059797|ref|ZP_19123938.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0007]
gi|429065272|ref|ZP_19129129.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0672]
gi|429071832|ref|ZP_19135183.1| deoxyribodipyrimidine photolyase [Escherichia coli 99.0678]
gi|429077146|ref|ZP_19140359.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0713]
gi|429824343|ref|ZP_19355835.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0109]
gi|429830698|ref|ZP_19361544.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0010]
gi|444923046|ref|ZP_21242751.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 09BKT078844]
gi|444945857|ref|ZP_21264273.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0839]
gi|444951417|ref|ZP_21269637.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0848]
gi|444956868|ref|ZP_21274863.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1753]
gi|444962196|ref|ZP_21279943.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1775]
gi|444967901|ref|ZP_21285373.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1793]
gi|444973403|ref|ZP_21290680.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1805]
gi|444978951|ref|ZP_21295941.1| deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 700728]
gi|444984241|ref|ZP_21301106.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA11]
gi|444989485|ref|ZP_21306221.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA19]
gi|445000337|ref|ZP_21316795.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA2]
gi|445005798|ref|ZP_21322133.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA47]
gi|445010966|ref|ZP_21327153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA48]
gi|445016739|ref|ZP_21332784.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA8]
gi|445022192|ref|ZP_21338110.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 7.1982]
gi|445027438|ref|ZP_21343211.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1781]
gi|445032933|ref|ZP_21348552.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1762]
gi|445038627|ref|ZP_21354093.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA35]
gi|445043927|ref|ZP_21359260.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4880]
gi|445049413|ref|ZP_21364575.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0083]
gi|445055067|ref|ZP_21370013.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0670]
gi|452969668|ref|ZP_21967895.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4009]
gi|13360191|dbj|BAB34156.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
Sakai]
gi|187767666|gb|EDU31510.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4196]
gi|188015195|gb|EDU53317.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4113]
gi|189003074|gb|EDU72060.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4076]
gi|189355803|gb|EDU74222.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4401]
gi|189363333|gb|EDU81752.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4486]
gi|189365922|gb|EDU84338.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4501]
gi|189373172|gb|EDU91588.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC869]
gi|189376468|gb|EDU94884.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC508]
gi|208729447|gb|EDZ79048.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4206]
gi|208732151|gb|EDZ80839.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4045]
gi|208737170|gb|EDZ84854.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4042]
gi|209159296|gb|ACI36729.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4115]
gi|209776598|gb|ACI86611.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|209776600|gb|ACI86612.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|209776602|gb|ACI86613.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|209776606|gb|ACI86615.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|217321930|gb|EEC30354.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
TW14588]
gi|254591254|gb|ACT70615.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O157:H7 str. TW14359]
gi|320193102|gb|EFW67742.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC1212]
gi|320637955|gb|EFX07724.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
G5101]
gi|320643350|gb|EFX12530.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str.
493-89]
gi|320648699|gb|EFX17332.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H
2687]
gi|320664741|gb|EFX31879.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
LSU-61]
gi|326341556|gb|EGD65346.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1044]
gi|326345773|gb|EGD69512.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1125]
gi|377900039|gb|EHU64377.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3A]
gi|377902128|gb|EHU66437.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3B]
gi|377913477|gb|EHU77614.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3C]
gi|377916866|gb|EHU80940.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3F]
gi|377917735|gb|EHU81792.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3D]
gi|377938892|gb|EHV02651.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4B]
gi|377949388|gb|EHV13024.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4C]
gi|377951258|gb|EHV14877.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4D]
gi|377954261|gb|EHV17821.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4E]
gi|377967660|gb|EHV31066.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4F]
gi|386794726|gb|AFJ27760.1| deoxyribodipyrimidine photolyase [Escherichia coli Xuzhou21]
gi|390650400|gb|EIN28816.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1996]
gi|390652366|gb|EIN30586.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA517]
gi|390652802|gb|EIN30980.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA505]
gi|390669428|gb|EIN46068.1| deoxyribodipyrimidine photolyase [Escherichia coli 93-001]
gi|390672462|gb|EIN48761.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1990]
gi|390673091|gb|EIN49343.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1985]
gi|390688326|gb|EIN63401.1| deoxyribodipyrimidine photolyase [Escherichia coli PA3]
gi|390691579|gb|EIN66315.1| deoxyribodipyrimidine photolyase [Escherichia coli PA9]
gi|390692544|gb|EIN67221.1| deoxyribodipyrimidine photolyase [Escherichia coli PA5]
gi|390708082|gb|EIN81362.1| deoxyribodipyrimidine photolyase [Escherichia coli PA10]
gi|390709811|gb|EIN82866.1| deoxyribodipyrimidine photolyase [Escherichia coli PA15]
gi|390711563|gb|EIN84534.1| deoxyribodipyrimidine photolyase [Escherichia coli PA14]
gi|390714442|gb|EIN87347.1| deoxyribodipyrimidine photolyase [Escherichia coli PA22]
gi|390733044|gb|EIO04640.1| deoxyribodipyrimidine photolyase [Escherichia coli PA25]
gi|390733125|gb|EIO04719.1| deoxyribodipyrimidine photolyase [Escherichia coli PA24]
gi|390751665|gb|EIO21552.1| deoxyribodipyrimidine photolyase [Escherichia coli PA31]
gi|390751942|gb|EIO21806.1| deoxyribodipyrimidine photolyase [Escherichia coli PA32]
gi|390754526|gb|EIO24104.1| deoxyribodipyrimidine photolyase [Escherichia coli PA33]
gi|390762675|gb|EIO31933.1| deoxyribodipyrimidine photolyase [Escherichia coli PA40]
gi|390775785|gb|EIO43782.1| deoxyribodipyrimidine photolyase [Escherichia coli PA41]
gi|390777658|gb|EIO45445.1| deoxyribodipyrimidine photolyase [Escherichia coli PA42]
gi|390782901|gb|EIO50534.1| deoxyribodipyrimidine photolyase [Escherichia coli PA39]
gi|390785277|gb|EIO52828.1| deoxyribodipyrimidine photolyase [Escherichia coli TW06591]
gi|390794532|gb|EIO61823.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10246]
gi|390801293|gb|EIO68354.1| deoxyribodipyrimidine photolyase [Escherichia coli TW11039]
gi|390808844|gb|EIO75663.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09109]
gi|390809092|gb|EIO75898.1| deoxyribodipyrimidine photolyase [Escherichia coli TW07945]
gi|390818924|gb|EIO85280.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10119]
gi|390822429|gb|EIO88549.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09098]
gi|390836798|gb|EIP01277.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4203]
gi|390839614|gb|EIP03713.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4196]
gi|390840970|gb|EIP04943.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09195]
gi|390855214|gb|EIP17953.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14301]
gi|390858757|gb|EIP21127.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14313]
gi|390859063|gb|EIP21429.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4421]
gi|390871281|gb|EIP32709.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4422]
gi|390875564|gb|EIP36573.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4013]
gi|390885711|gb|EIP45907.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4402]
gi|390887707|gb|EIP47637.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4439]
gi|390894196|gb|EIP53725.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4436]
gi|390903553|gb|EIP62599.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1738]
gi|390910002|gb|EIP68765.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4437]
gi|390911691|gb|EIP70385.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1734]
gi|390914331|gb|EIP72873.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4448]
gi|390925932|gb|EIP83539.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1845]
gi|408071851|gb|EKH06182.1| deoxyribodipyrimidine photolyase [Escherichia coli PA7]
gi|408075589|gb|EKH09821.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK920]
gi|408085708|gb|EKH19288.1| deoxyribodipyrimidine photolyase [Escherichia coli PA34]
gi|408089499|gb|EKH22804.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA506]
gi|408094894|gb|EKH27889.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA507]
gi|408101810|gb|EKH34237.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA504]
gi|408109651|gb|EKH41529.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1999]
gi|408116277|gb|EKH47586.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1997]
gi|408121725|gb|EKH52631.1| deoxyribodipyrimidine photolyase [Escherichia coli NE1487]
gi|408129995|gb|EKH60192.1| deoxyribodipyrimidine photolyase [Escherichia coli NE037]
gi|408131840|gb|EKH61857.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK2001]
gi|408140762|gb|EKH70249.1| deoxyribodipyrimidine photolyase [Escherichia coli PA4]
gi|408149997|gb|EKH78616.1| deoxyribodipyrimidine photolyase [Escherichia coli PA23]
gi|408152210|gb|EKH80652.1| deoxyribodipyrimidine photolyase [Escherichia coli PA49]
gi|408157410|gb|EKH85562.1| deoxyribodipyrimidine photolyase [Escherichia coli PA45]
gi|408166470|gb|EKH94038.1| deoxyribodipyrimidine photolyase [Escherichia coli TT12B]
gi|408171756|gb|EKH98856.1| deoxyribodipyrimidine photolyase [Escherichia coli MA6]
gi|408186591|gb|EKI12619.1| deoxyribodipyrimidine photolyase [Escherichia coli CB7326]
gi|408191151|gb|EKI16768.1| deoxyribodipyrimidine photolyase [Escherichia coli EC96038]
gi|408191435|gb|EKI17041.1| deoxyribodipyrimidine photolyase [Escherichia coli 5412]
gi|408232539|gb|EKI55730.1| deoxyribodipyrimidine photolyase [Escherichia coli PA38]
gi|408238586|gb|EKI61379.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1735]
gi|408248765|gb|EKI70758.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1736]
gi|408252524|gb|EKI74167.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1737]
gi|408258867|gb|EKI80088.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1846]
gi|408268098|gb|EKI88503.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1847]
gi|408269341|gb|EKI89587.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1848]
gi|408278615|gb|EKI98318.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1849]
gi|408284809|gb|EKJ03877.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1850]
gi|408287207|gb|EKJ06087.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1856]
gi|408300205|gb|EKJ17929.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1862]
gi|408336260|gb|EKJ51057.1| deoxyribodipyrimidine photolyase [Escherichia coli NE098]
gi|408350257|gb|EKJ64140.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK523]
gi|408352843|gb|EKJ66373.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1304]
gi|408558184|gb|EKK34568.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.2239]
gi|408558632|gb|EKK34992.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4870]
gi|408559774|gb|EKK36074.1| deoxyribodipyrimidine photolyase [Escherichia coli 6.0172]
gi|408584916|gb|EKK59831.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0586]
gi|408589449|gb|EKK63961.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.2524]
gi|408591241|gb|EKK65684.1| deoxyribodipyrimidine photolyase [Escherichia coli 10.0833]
gi|408603865|gb|EKK77478.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0869]
gi|408605279|gb|EKK78795.1| deoxyribodipyrimidine photolyase [Escherichia coli 8.0416]
gi|408609257|gb|EKK82639.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.0221]
gi|408616656|gb|EKK89801.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0821]
gi|427214129|gb|EKV83479.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1042]
gi|427216219|gb|EKV85353.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 89.0511]
gi|427216461|gb|EKV85580.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1467]
gi|427233410|gb|EKW01160.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.2281]
gi|427233503|gb|EKW01241.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0039]
gi|427235678|gb|EKW03292.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0091]
gi|427251053|gb|EKW17654.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0056]
gi|427252479|gb|EKW18964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0055]
gi|427253725|gb|EKW20119.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 94.0618]
gi|427269886|gb|EKW34793.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0943]
gi|427270023|gb|EKW34921.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0183]
gi|427275065|gb|EKW39694.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.1288]
gi|427286000|gb|EKW49890.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0428]
gi|427291627|gb|EKW55021.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0427]
gi|427293213|gb|EKW56474.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0939]
gi|427304422|gb|EKW67067.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0003]
gi|427305926|gb|EKW68487.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0932]
gi|427310167|gb|EKW72431.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0107]
gi|427321098|gb|EKW82807.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.1742]
gi|427321883|gb|EKW83546.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0007]
gi|427333669|gb|EKW94765.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0713]
gi|427333765|gb|EKW94853.1| deoxyribodipyrimidine photolyase [Escherichia coli 99.0678]
gi|427336541|gb|EKW97502.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0672]
gi|429259718|gb|EKY43369.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0109]
gi|429261582|gb|EKY44994.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0010]
gi|444550140|gb|ELV28267.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 09BKT078844]
gi|444564451|gb|ELV41387.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0839]
gi|444570806|gb|ELV47318.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0848]
gi|444581854|gb|ELV57685.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1753]
gi|444584747|gb|ELV60364.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1775]
gi|444585664|gb|ELV61212.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1793]
gi|444599163|gb|ELV74054.1| deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 700728]
gi|444599599|gb|ELV74465.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA11]
gi|444607783|gb|ELV82346.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1805]
gi|444614058|gb|ELV88298.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA19]
gi|444622532|gb|ELV96483.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA2]
gi|444631680|gb|ELW05272.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA48]
gi|444631979|gb|ELW05557.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA47]
gi|444636673|gb|ELW10063.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA8]
gi|444647044|gb|ELW20028.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 7.1982]
gi|444649530|gb|ELW22412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1781]
gi|444653039|gb|ELW25774.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1762]
gi|444662072|gb|ELW34340.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA35]
gi|444666390|gb|ELW38461.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4880]
gi|444672297|gb|ELW44027.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0083]
gi|444674177|gb|ELW45741.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0670]
Length = 472
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 144/448 (32%), Positives = 241/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRNVPGKSVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|345872727|ref|ZP_08824656.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
gi|343918048|gb|EGV28819.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
Length = 477
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 228/440 (51%), Gaps = 19/440 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ +S+ L +LQ+ S L I + E++++V V N Y+P+ RD I
Sbjct: 52 WLHRSLQSLDRSLQDRGSRLWITRGDSLAELRRIVAATGAAEVHWNRLYDPRIRDRDAAI 111
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
++ ++ G S+ ++FE EIL G+PY +FS + W K + P K
Sbjct: 112 EQAIRADGLHCESHNGSLLFEPWEILTAQGQPYRVFSAF---WRNATKRLPDIQPTAPTK 168
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK----TGASGAKILLNNFI-KK 204
+ +++ + + + DL G++ G A+ + +F+ +
Sbjct: 169 D-----IQWTRIEPPLPG--LEIKDLALQPEIAWDAGLQETWTPGEQAAQDMAAHFLDTR 221
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ Y +R+ P + GTS LS HL FG IS R+L++L + + + + ++
Sbjct: 222 LSRYGEDRDRPDMPGTSRLSPHLHFGEISPRRLLELTRSRVADPSEDPAEPF---IREVG 278
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
WR+F +LY +P + + W+ D W +G TG P++D+ + +L
Sbjct: 279 WREFAHHLLYHFPQTPTEPLNPRFAEFPWKQDE-TDARLQAWRQGRTGIPVVDAGLRELW 337
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
+G+MHNR+RM+ ASFL KN+ + W+ G +F + L D DLASN WQW+A G + P
Sbjct: 338 DTGWMHNRVRMLVASFLTKNLLLPWQKGAVWFWDTLVDADLASNTLGWQWTAGCGADAAP 397
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FR+FNP++Q ++FD G +I+++ P+L++L K++H PW A + L AG+ LG +YP
Sbjct: 398 YFRVFNPVLQGQRFDPDGAYIKRWCPELARLPLKFLHQPWTAPTTILTAAGVTLGVDYPH 457
Query: 445 PILEHSLSKKNILKRYNFIK 464
P+++ + S++ L + IK
Sbjct: 458 PMVDLATSRQQALAAWEAIK 477
>gi|300957650|ref|ZP_07169842.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1]
gi|300315627|gb|EFJ65411.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1]
Length = 395
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 231/413 (55%), Gaps = 28/413 (6%)
Query: 55 IASKEIKKLVIKLN-IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNE 113
+AS EI K V N + + N+ YE RD +++ L+ + C+ F D VI
Sbjct: 5 VASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNVVCEGFD--DSVILPPGA 62
Query: 114 ILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN 173
++ + Y +F+ ++ W+++++ + P V SS I + I+LN
Sbjct: 63 VMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPK-------VRSSG--SIEPSPSITLN 113
Query: 174 DLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTI 232
+ + + + A L F + Y R++P++ GTS LS L G +
Sbjct: 114 ---YPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGL 170
Query: 233 SIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNI 291
S R+ + + ++ D WL++LIWR+FY+ ++ +P++ ++ F D +
Sbjct: 171 SPRQCLHRLL--AEQPQALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRV 228
Query: 292 LWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKW 351
W+S+ + W +G TGYP++D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+
Sbjct: 229 QWQSN---PAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWRE 285
Query: 352 GENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQ 411
GE YF ++L D DLA+NNG WQW+AS+G + P+FRIFNP Q +KFD++G FIR++LP+
Sbjct: 286 GERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPE 345
Query: 412 LSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
L + K +H PWK + +KAG+ L +YP+PI+EH ++ L Y +
Sbjct: 346 LRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVEHKEARVQTLAAYEAAR 392
>gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
Length = 483
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 143/468 (30%), Positives = 245/468 (52%), Gaps = 26/468 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V CV++ D+ + D +R+ G ++ +S+ L L+ + LI+R A+ + +
Sbjct: 36 VLCVYVLDE-VSDEVRALGGAAR---WWLAQSLRSLEAELRAAGALLILRRGPAAAVLAE 91
Query: 63 LVIKLNIDAVMINH-DYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
L + + AV N + P + + L + G + + + + I +K G+
Sbjct: 92 LAQQSDAAAVHWNEIEIAPHRAVA-DALADALTMAGIAYHRHSGDTLVAPSAIRSKDGRG 150
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
+F+ + ++ V S Q P + L + + +S L +
Sbjct: 151 MRVFTPFWRR----VLSLGDPPQPLPRPAAL-------RPAPALPGAQLSDWQLEPTAPD 199
Query: 182 LSSLGIKT----GASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ G++ G + AK L +F+ ++ Y R+YP + TS LS +LRFG IS R+
Sbjct: 200 WAG-GLRATWRPGEAAAKTRLADFLARLPGYAEGRDYPDRHVTSGLSPYLRFGEISPRQ- 257
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
V +F +LS+L WR+F + +L +P++ ++ + +D W+SD+
Sbjct: 258 VWYAARFAAAERPAIAPDIDKFLSELGWREFCRHLLADHPDLAARNLQPAFDAFPWQSDD 317
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A W +G TGYP++D+ + +L SG MHNR+RMV SFL+K++ I+W+ GE +F
Sbjct: 318 GA---LTAWQRGRTGYPIVDAGMHELWHSGVMHNRVRMVVGSFLVKHLLIDWRLGEQWFW 374
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+ L D D SN GNWQW A G + P+FR+FNP++QS+KFD G +IR++LP+L+ L N
Sbjct: 375 DTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDADGAYIRRWLPELAGLPN 434
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH PW A+ +L AG+ LG NYP+PI++H +++ L Y+ ++
Sbjct: 435 NLIHQPWTATPLELAAAGVELGGNYPRPIVDHKAARQRALSAYSELRQ 482
>gi|434391947|ref|YP_007126894.1| deoxyribodipyrimidine photo-lyase type I [Gloeocapsa sp. PCC 7428]
gi|428263788|gb|AFZ29734.1| deoxyribodipyrimidine photo-lyase type I [Gloeocapsa sp. PCC 7428]
Length = 479
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 247/472 (52%), Gaps = 35/472 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D NIL+ + + R+ ++ + L S L+I + ++ I +
Sbjct: 31 VVGVFCLDPNILE----RDDVAAVRVTYMIGCLQALQQRYTEVGSQLLILHDNPTQAIPR 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L LN AV N D EP + RD+ I + LK G +F DQ++ +EI + +P
Sbjct: 87 LAAALNAQAVFWNWDVEPYSQERDRTIIEALKEKGIQFLHENWDQILHSPDEIRTGSHQP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN-----IISLNDLG 176
Y++F+ + + W K K+ PV + L + + + I + + DLG
Sbjct: 147 YTVFTPFWRNWSSKSKAE-------PVAT-LQGVTGLTDTERDIAQQAGVIPLPTAKDLG 198
Query: 177 FCKSNLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
F L I G + A+ L F K I Y RN+P++NGTS LS L+FG I IR
Sbjct: 199 FVWDR--DLVIAPGEAAAQERLEEFSYKAITEYKEQRNFPAVNGTSQLSAALKFGAIGIR 256
Query: 236 KLVKLIFKFIK--KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILW 293
+ ++ + +TD W +L WR+FYQ +Y +P + ++++ + N +
Sbjct: 257 TVWAATVAALENSRSDETDT-SIRAWQQELAWREFYQHAMYHFPELATGAYREAFKNFPY 315
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
+++ ++ F WC G TGYP++D+A+ Q+N SG+MHNR RM+ A+FL K++ I+ + GE
Sbjct: 316 QNN---EELFQAWCAGKTGYPIVDAAMRQMNESGWMHNRCRMIVANFLTKDLLIDPRLGE 372
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YF +L D DL++NNG WQWSASSG +P RIFNP Q++KFD +G +IR+++P+L
Sbjct: 373 KYFYQRLIDGDLSANNGGWQWSASSGMDPKP-VRIFNPASQAQKFDPEGEYIREWIPELR 431
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ +Y+ + LE+ + YP PI++H ++ Y KN
Sbjct: 432 SVDTEYLLN---GDIPALEREAL----GYPLPIVDHKRQQRQFKAIYAQQKN 476
>gi|291281640|ref|YP_003498458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
CB9615]
gi|387505751|ref|YP_006158007.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
RM12579]
gi|416814990|ref|ZP_11891700.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
3256-97]
gi|416825006|ref|ZP_11896295.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA
5905]
gi|419118062|ref|ZP_13663061.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5A]
gi|419119196|ref|ZP_13664175.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5B]
gi|419124923|ref|ZP_13669823.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5C]
gi|419135172|ref|ZP_13679979.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC5E]
gi|425247236|ref|ZP_18640449.1| deoxyribodipyrimidine photolyase [Escherichia coli 5905]
gi|209776604|gb|ACI86614.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|290761513|gb|ADD55474.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
CB9615]
gi|320654283|gb|EFX22336.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659916|gb|EFX27458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA
5905]
gi|374357745|gb|AEZ39452.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
RM12579]
gi|377953948|gb|EHV17509.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5A]
gi|377971814|gb|EHV35167.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5B]
gi|377979980|gb|EHV43250.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5C]
gi|377987482|gb|EHV50668.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC5E]
gi|408173922|gb|EKI00920.1| deoxyribodipyrimidine photolyase [Escherichia coli 5905]
Length = 472
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 144/448 (32%), Positives = 241/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRNVPGKSVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|367475309|ref|ZP_09474774.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 285]
gi|365272410|emb|CCD87242.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 285]
Length = 415
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 128/432 (29%), Positives = 227/432 (52%), Gaps = 27/432 (6%)
Query: 42 LQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYE--PQAIIRDKLIKKELKVIGCK 99
+Q+ +DL+IR A+ + +L + AV N + P+A+ + ++ L IG
Sbjct: 1 MQSLGADLVIRRGPAATVLSQLARETKAGAVYWNDVAQRGPRAVA--ERVEAALGEIGVT 58
Query: 100 FFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSS 159
+ D ++ + E+ K G+ +F+ + K+ + K PV+
Sbjct: 59 SRVFADDLLVDPAEMRGKDGRGPRVFTPFWKRVLALGDPPKPL--PMPVR---------- 106
Query: 160 KLHKIINNNIISLNDLGFCKSNLSSLG-----IKTGASGAKILLNNFI-KKIKNYNINRN 213
L + +++++L + G + G A+ LN+F+ + Y +R+
Sbjct: 107 -LPPVPGIASLAVDELALEPTRPDWAGGLRATWQAGERAAQQRLNDFLTSSVGTYAADRD 165
Query: 214 YPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMIL 273
P + TS LS HLRFG IS R++ +F + G +LS++ WR+F + +L
Sbjct: 166 RPDVEATSRLSPHLRFGEISPRQIFHAA-RFAAEERPALAKGIDKFLSEVGWREFSRHLL 224
Query: 274 YCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRL 333
Y P++ ++ + +D W D+ A W +G TGYP++D+ + +L +G MHNR+
Sbjct: 225 YNNPDLATRNLQPTFDAFPWTQDDAA---LTAWQRGQTGYPIVDAGMRELWHTGSMHNRV 281
Query: 334 RMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPII 393
RMV AS L+K++ I+W+ GE +F + L D D SN +WQW A SG + P+FR+FNP++
Sbjct: 282 RMVAASLLVKHLLIDWRQGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVL 341
Query: 394 QSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSK 453
Q +KFD G ++R+++P+L++L IH PW A +L +AG+ LG++YP P ++H +
Sbjct: 342 QGEKFDASGSYVRRWVPELARLPASLIHQPWAAKPLELAEAGVTLGRSYPAPTIDHKRGR 401
Query: 454 KNILKRYNFIKN 465
+ L Y ++
Sbjct: 402 ERALAAYASLRT 413
>gi|422020244|ref|ZP_16366784.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
gi|414101839|gb|EKT63436.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
Length = 477
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/448 (31%), Positives = 242/448 (54%), Gaps = 36/448 (8%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+I F+ ++++EL L LI +A + K + + N + NH Y
Sbjct: 48 VSPRQIAFLHQNLVELQHTLAKRGIPLICHTTATFADSVKWLLNFAQQQNATGLYFNHQY 107
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEK-VK 137
E +RD+ ++++ + + F+Y D ++ + + G Y +++ +++ ++ + +
Sbjct: 108 ELNERLRDEQLRQQAQHL--NIFTYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMM 165
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
S+ C S+P + H + + + + S G A
Sbjct: 166 SDFC---SFPAPKPRGAALAVENTHPLFVHQSVEI-----------SPQFTAGEHAALAK 211
Query: 198 LNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L F +++++Y +R+ P+I+GTS LS +L G +S R+ V + + + + G
Sbjct: 212 LRQFCSERVQDYQRDRDIPAIDGTSQLSPYLALGVLSPRQCVNRLLAENPQVFDSQESGG 271
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
F+WL++LIWR+FY +L +P + ++ F + +I W D A W G TGYP+
Sbjct: 272 FSWLNELIWREFYSHLLVAFPRLCRHQPFIEWTQHIQWNPDETA---LTAWKNGQTGYPI 328
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL+K++ ++W+ GE+YF ++L D LA+NNG WQWS
Sbjct: 329 VDAAMRQLNQTGWMHNRLRMIVASFLVKDLLVDWRKGEHYFMSQLIDGTLAANNGGWQWS 388
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP--WKASSYKLEK 433
AS+G + P+FRIFNP Q KKFD QG FIR++LP+L + +IH P W A S++
Sbjct: 389 ASTGVDASPWFRIFNPTTQGKKFDPQGTFIREWLPELRDVPETFIHEPHTW-AESHQ--- 444
Query: 434 AGIILGKNYPKPILEHSLSKKNILKRYN 461
+ NYP PI++H ++ L+ +
Sbjct: 445 ----VSLNYPTPIVDHKQARLMTLEAFE 468
>gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
Length = 477
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/447 (31%), Positives = 241/447 (53%), Gaps = 34/447 (7%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDY 78
+ R+I F+ ++++EL L LI A + K ++ N + NH Y
Sbjct: 48 VSPRQIAFLHQNLVELQHALAKRGIPLICHTAATFADSVKWLLDFAQQQNATGLYFNHQY 107
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E +RD+ ++++ + + +Y D ++ + + G Y +++ +++ ++ ++
Sbjct: 108 ELNERLRDEQLRQQSQHL--NILTYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMM 165
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ +S+P + H + + + +S G A L
Sbjct: 166 SD--FRSFPAPKPRGAALAVENTHPLFVHQSVE-----------TSPQFIAGEHAALAKL 212
Query: 199 NNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F +++++Y +R+ P+INGTS LS +L G +S R+ V + + + + G F
Sbjct: 213 RQFCSERVQDYQRDRDIPAINGTSQLSPYLALGVLSPRQCVNRLLAENPQVFDSQESGGF 272
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
+WL++LIWR+FY +L +P + ++ F K +I W D+ F W G TGYP++
Sbjct: 273 SWLNELIWREFYSHLLVAFPRLCRHQPFIKWTQHIQWNPDDAI---FSAWKSGQTGYPIV 329
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLN +G+MHNRLRM+ ASFL+K++ ++W+ GE+YF ++L D LA+NNG WQWSA
Sbjct: 330 DAAMRQLNQTGWMHNRLRMIVASFLVKDLLVDWRKGEHYFMSQLIDGTLAANNGGWQWSA 389
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP--WKASSYKLEKA 434
S+G + P+FRIFNP Q KKFD QG FIR++LP+L + K+IH P W A S++
Sbjct: 390 STGVDASPWFRIFNPTTQGKKFDPQGTFIREWLPELRDVPEKFIHEPHTW-AESHQ---- 444
Query: 435 GIILGKNYPKPILEHSLSKKNILKRYN 461
+ NYP PI++H ++ L+ +
Sbjct: 445 ---VSLNYPTPIVDHKQARLMTLEAFE 468
>gi|424817110|ref|ZP_18242261.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227]
gi|325498130|gb|EGC95989.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227]
Length = 472
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 137/448 (30%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 MSPRQAEFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DCVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ V + K+ + + L + + + + A L
Sbjct: 165 G------------MPECVAAPKVRSSGSLDPAPSITLNYPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y+ R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGASQYDQQRDFPAVEGTSRLSASLATGRLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYHPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
+L +YP+PI++H ++ L Y K
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYEEAK 469
>gi|432542043|ref|ZP_19778901.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE236]
gi|432547387|ref|ZP_19784181.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE237]
gi|432620773|ref|ZP_19856816.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE76]
gi|432814235|ref|ZP_20048026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE115]
gi|431077087|gb|ELD84355.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE236]
gi|431084733|gb|ELD90860.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE237]
gi|431162186|gb|ELE62641.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE76]
gi|431367248|gb|ELG53732.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE115]
Length = 472
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 143/447 (31%), Positives = 247/447 (55%), Gaps = 35/447 (7%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ R +A + + +K++ + ++ + N+ Y
Sbjct: 47 MSPRQAEFINAQLNGLRIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYP-VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ P V+S S + ++ I+LN + + + + A
Sbjct: 165 GVPECVAAPKVRS-------SGSIDPALS---ITLN---YPRQSFDTAHFPVEEKAAIAQ 211
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 212 LRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAG 269
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESD-NYAKKNFLNWCKGYTGYP 314
WL++LIWR+FY+ ++ YP++ ++ F D + W+S+ Y K W +G TGYP
Sbjct: 270 SVWLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPTYLKA----WQEGKTGYP 325
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
++D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
+AS+G + P+FRIFNP Q ++FD +G FIR++LP+L + K +H PWK + +KA
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEEFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKA 441
Query: 435 GIILGKNYPKPILEHSLSKKNILKRYN 461
G+ L +YP+PI++H ++ L Y
Sbjct: 442 GVTL--DYPQPIVDHKEARLRTLAAYE 466
>gi|300860779|ref|ZP_07106866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TUSoD Ef11]
gi|422733543|ref|ZP_16789845.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645]
gi|422739032|ref|ZP_16794215.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141]
gi|428767034|ref|YP_007153145.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis str.
Symbioflor 1]
gi|300849818|gb|EFK77568.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TUSoD Ef11]
gi|315145075|gb|EFT89091.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141]
gi|315160408|gb|EFU04425.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645]
gi|427185207|emb|CCO72431.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis str.
Symbioflor 1]
Length = 477
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 218/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYREQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASV--- 254
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F+ W
Sbjct: 255 ---PSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWIND---PEMFVKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|170769095|ref|ZP_02903548.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
gi|170122167|gb|EDS91098.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
Length = 472
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ R +A + + +K++ + + + N+ Y
Sbjct: 47 MSPRQAEFINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + + Y R++P++ GTS LS L G S R+ + + ++ +
Sbjct: 213 RQFCQNGVGQYEQQRDFPAVEGTSRLSASLATGGGSPRQCLHRLLA--EQPQALEGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP + ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYYPTLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI++H ++ L Y +
Sbjct: 444 RL--DYPEPIVDHKEARLRTLAAYEAAR 469
>gi|71280055|ref|YP_268123.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H]
gi|71145795|gb|AAZ26268.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H]
Length = 470
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 143/358 (39%), Positives = 212/358 (59%), Gaps = 21/358 (5%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSF 127
NI V+ N + E RDK + ELK G + VI K ++LN++G Y +F+
Sbjct: 100 NITEVVANSEVEFNEQQRDKALYLELKASGIPLTLLEADVIVPKGKVLNQSGIMYKVFTP 159
Query: 128 YQKKWIEKVKSNKC-YLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG 186
+++ W+ ++ YL VKS S ++K N D G ++SS
Sbjct: 160 FKRAWLTYIQQGGFEYLGKVSVKS--------SAVNKADNQE----EDQG----SISSTW 203
Query: 187 IKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
+IL + +KI Y +NR+ PSI GTS +S +L G IS R +++L+
Sbjct: 204 PLATVFEQQILPKFYQQKISTYKLNRDIPSIKGTSGISPYLAAGVISPRFVLRLLLNKHP 263
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLN 305
F+WL+++IWR+FY+ +L+ + ++ +K+ Y +LW +D F
Sbjct: 264 DLLVASDSEEFSWLNEIIWREFYRHLLFHEQRLCKHQCYKENYQEMLWHNDAAL---FDA 320
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
WC+G TGYPL+D+A+ QLN +G+MHNRLRMV ASFL K++ I+W+ GE YF L D DL
Sbjct: 321 WCQGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRLGEKYFMQHLIDGDL 380
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
ASNNG WQW+AS+GC +QP+FRIFNPI QS++FD +G+FIRKY+P+L+ +S+K IH P
Sbjct: 381 ASNNGGWQWAASTGCDAQPYFRIFNPIRQSERFDPKGVFIRKYIPELNNISDKAIHFP 438
>gi|422970547|ref|ZP_16974059.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TA124]
gi|371600327|gb|EHN89102.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TA124]
Length = 472
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|229545787|ref|ZP_04434512.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
gi|256619098|ref|ZP_05475944.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
gi|256853160|ref|ZP_05558530.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
gi|307274924|ref|ZP_07556087.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
gi|307291962|ref|ZP_07571831.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
gi|421512360|ref|ZP_15959167.1| Deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29212]
gi|422685955|ref|ZP_16744168.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000]
gi|422718954|ref|ZP_16775605.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017]
gi|229309099|gb|EEN75086.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
gi|256598625|gb|EEU17801.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
gi|256711619|gb|EEU26657.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
gi|306496960|gb|EFM66508.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
gi|306508372|gb|EFM77479.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
gi|315029350|gb|EFT41282.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000]
gi|315034003|gb|EFT45935.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017]
gi|401674473|gb|EJS80824.1| Deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29212]
Length = 477
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 217/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELAS---- 253
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P + ++++ I W +D + F+ W
Sbjct: 254 --APSSLSKETFKKELAWRDFYNMIYSTFPQQKEEVIQEKFRYIQWTND---PEMFVKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|359440272|ref|ZP_09230193.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20429]
gi|358037809|dbj|GAA66442.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20429]
Length = 464
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 225/400 (56%), Gaps = 25/400 (6%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR+ ++ + + I L ++ ++ ++E+ ++ V+ N +YE + R
Sbjct: 54 RRVTYLQSQLADYGITLHVIEAP---SFSDCTRELIDFCKSNDVKHVIANTEYELNEVNR 110
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
DK I E + F Y+ +I + N++ + Y +F+ +++ W+++ + L
Sbjct: 111 DKAILHECDELSITFTLYEGDLIAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQ 170
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KK 204
+P+ S ++ G KS+ S +++NFI K
Sbjct: 171 WPLTS-----------------EPTKFDESGLLKSDGCSDKWPVDDETLSTVVDNFICDK 213
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ +Y+ R+ PS+ GTS LS +L G +S ++L+ I + T FTW+++L+
Sbjct: 214 LTSYDDQRDIPSVKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELV 273
Query: 265 WRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+FY+ ++ +P + +F ++Y+ ++W ++ F WC+G TGYPL+D+A++QL
Sbjct: 274 WREFYRHLIAEFPKLSRGDNFNEKYNAVVWRK---SENEFTAWCEGRTGYPLVDAAMLQL 330
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G+MHNRLRMV ASFL K++ I+W+ GE +F L D DLASNNG WQW+AS+GC +Q
Sbjct: 331 KQTGWMHNRLRMVVASFLTKHLLIDWREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQ 390
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
P+FR+FNPI QS++FD G FIRKYLP+L + +K+IH P
Sbjct: 391 PYFRVFNPIRQSERFDPTGKFIRKYLPELENVPDKHIHFP 430
>gi|70732464|ref|YP_262226.1| deoxyribodipyrimidine photolyase [Pseudomonas protegens Pf-5]
gi|68346763|gb|AAY94369.1| deoxyribodipyrimidine photolyase [Pseudomonas protegens Pf-5]
Length = 481
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 146/451 (32%), Positives = 244/451 (54%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I+F +++ LS L + L+IR A ++ ++++ +L + + N +Y
Sbjct: 47 KIDFWLRNLQSLSTALGRLNIPLLIRSAATWEQAPQVLLELCRQLQVQMLHFNQEYGIHE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L+ G + DQ++F+ +L K+G + +FS ++K CY
Sbjct: 107 SRRDAAVTRALQHAGISVQGHLDQLLFQPGSVLTKSGGYFQVFSQFRKV---------CY 157
Query: 143 LQSYPVKSYLNNLVHS--SKLHKIINNNIISLNDLGFCKSNLSSLGI-KTGASGAKILLN 199
+ + + L LV + ++L IN + + GF + + G A+ L
Sbjct: 158 SR---LHTALPALVKAPGAQLPLSINADPLPQRVEGFPSPTQALRELWPAGDDEAQRRLE 214
Query: 200 NFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F ++I Y R++P+ GTS LS +L G IS R+ + + + +++ G T
Sbjct: 215 KFSDEQIHYYQSERDFPAKPGTSQLSPYLAAGVISPRQCLHAALRGNQGEFESGSPGAVT 274
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
W+++L+WR+FY+ IL YP V +++F+ E + + W +A + W + TG P+ID
Sbjct: 275 WINELLWREFYKHILVGYPRVSRHRAFRPETEAVKW---RHAPEELAAWQEARTGLPIID 331
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWS+S
Sbjct: 332 AAMRQLLETGWMHNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSS 391
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G S P+FRIFNPI QS+KFD +G FI+ +LPQL+ L+ K IH+P G+
Sbjct: 392 TGTDSAPYFRIFNPISQSQKFDSEGRFIKHWLPQLAGLNKKDIHNP-------AAMGGLF 444
Query: 438 LGKNYPKPILEHSLSKKNILKRYNFIKNILN 468
YP PI++ S S++ L + + ++
Sbjct: 445 GVPGYPAPIVDLSRSRERALAAFKALPARMD 475
>gi|359774690|ref|ZP_09278046.1| deoxyribodipyrimidine photo-lyase [Gordonia effusa NBRC 100432]
gi|359308173|dbj|GAB20824.1| deoxyribodipyrimidine photo-lyase [Gordonia effusa NBRC 100432]
Length = 461
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 136/462 (29%), Positives = 237/462 (51%), Gaps = 34/462 (7%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
E VF+ D +L R+ G R+ F+ + L+ +L L+I + I
Sbjct: 30 EAIAVFVLDDALL---RTAG---GPRMAFLAGCVNALNDDLNGR---LLILRGPPEEAIP 80
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGC--KFFSYKDQVIFEKNEILNKTG 119
LV +++ D+V I+ D+ P RD ++ L G + I+NKTG
Sbjct: 81 ALVRQVDADSVHISADFGPYGTGRDSAVRDALSATGSGVPLIATGSPYAVSPGRIVNKTG 140
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
PY +F+ +++ W++ + + V+ +L+ + ++ I++ + D G
Sbjct: 141 NPYQVFTPFRRAWLDHGWHTPAHTDANTVR-WLDPTDVTGRV--AIDS---AFGDPGSDG 194
Query: 180 SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
L + G + + L++ + +Y+ R+ P ++ T+ LS +L+FG + R ++
Sbjct: 195 PQLLAAGERAAQKRWRAYLHD---DLDSYSDERDRPDLDTTTRLSAYLKFGCLHPRTILH 251
Query: 240 LIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
I ++ +T S+L WRDFY +LY P+ ++ K++DN+ +S +A
Sbjct: 252 DIRSRSDENART-------LRSELAWRDFYADVLYRRPDTARHNYNKKFDNLRHDSGPHA 304
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
F WC G TGYP++D+ + QL + G+MHNR+RM+ ASFL K++ + W WG +F
Sbjct: 305 DAAFEAWCSGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFLTKDLHLPWWWGARHFMTY 364
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D DLASN WQW+A G + P+FR+FNP Q ++FD G ++R+++P+L + K
Sbjct: 365 LVDGDLASNQHGWQWTAGCGTDAAPYFRVFNPTGQGERFDPNGDYVRRWVPELRGIKGKA 424
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+H PWK S + A +YP PI++H+ + L RY+
Sbjct: 425 VHQPWKHSE-SFDSA------DYPAPIVDHAAQRLEALARYD 459
>gi|422734279|ref|ZP_16790573.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1341]
gi|315169001|gb|EFU13018.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1341]
Length = 477
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 217/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDICGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYREQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASASSS 257
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
K T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 258 LSKE------TFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFAKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI++++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|432749144|ref|ZP_19983759.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE29]
gi|431299336|gb|ELF88908.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE29]
Length = 472
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 KL--DYPQPIVDHKEARLRTLAAYE 466
>gi|222155443|ref|YP_002555582.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82]
gi|387615975|ref|YP_006118997.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG
857C]
gi|222032448|emb|CAP75187.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82]
gi|312945236|gb|ADR26063.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG
857C]
Length = 472
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 238/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L L L+ R +A + + +K++ + I + N+ Y
Sbjct: 47 VSPRQAELINTQLNALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD ++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQAERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLL--AEQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EK G+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWKWA----EKTGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|450186352|ref|ZP_21889437.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli SEPT362]
gi|449324455|gb|EMD14387.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli SEPT362]
Length = 472
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 144/445 (32%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ +Q W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFQNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWCEGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGM 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
Length = 469
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 237/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWDVPSALAELVWHPEQT---------------FDYPRVDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRDFCRERVQDYHQARDFPAQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
Length = 469
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 237/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWDVPSTLAELVWHPEQT---------------FDYPRVDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRDFCRERVQDYHQARDFPAQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|156039880|ref|XP_001587047.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980]
gi|154696133|gb|EDN95871.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 595
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 151/442 (34%), Positives = 230/442 (52%), Gaps = 32/442 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++FI +++ L +L D L + K ++ +++L + N +YE
Sbjct: 161 RVDFILRTLEILKRDLAELDVPLYVETVEKRKGVEGRILELLGEWGASHLYANMEYEVDE 220
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + ++ G D + E+ + GK YS+++ + K WI V N
Sbjct: 221 LRREARMVRDCAERGIAMDVLHDTCVVRPGELRSGQGKQYSVYTPWFKAWIAHVHENSDL 280
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII------SLNDLGFCKSNLSSLGIKTGASGAKI 196
L + N K K+ I SL D K S+ G A+
Sbjct: 281 LDLFDAPGK-NPASAREKFAKLFETKIPDAPANKSLTDEE--KKRFHSM-WPAGEHAAQE 336
Query: 197 LLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI- 254
L+ F +KI Y +RN+P++N TS LS+H GT+S R ++ + H T +
Sbjct: 337 RLSKFADEKINKYEEHRNFPNLNSTSSLSVHFASGTLSARTAIRTA----RDHNNTKKLN 392
Query: 255 ----GYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKG 309
G TW+S++ WRDFY+ +L +P V +NK FK EY NI WE +N +F W +G
Sbjct: 393 AGYQGIQTWISEVAWRDFYKHVLVHWPYVCMNKPFKPEYTNITWEYNN---THFQAWTEG 449
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TGYP++D+A+ QL GYMHNR RM+ SFL K++ I+W+ GE +F L D D ASNN
Sbjct: 450 KTGYPIVDAAMRQLKHCGYMHNRCRMIVGSFLAKHLLIDWRMGERFFMEHLIDGDFASNN 509
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSY 429
G W + AS+G QP+FRIFNP++QS+KFD +G FIRK++P+L + K+IH P+
Sbjct: 510 GGWGFCASTGVDPQPYFRIFNPLLQSEKFDAEGEFIRKWVPELKSVKGKFIHEPFGDKV- 568
Query: 430 KLEKAGIILGKNYPKPILEHSL 451
AG+ YP+ I+EH +
Sbjct: 569 ---AAGVARKNGYPERIVEHKV 587
>gi|336476980|ref|YP_004616121.1| deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
gi|335930361|gb|AEH60902.1| Deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
Length = 457
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 152/433 (35%), Positives = 244/433 (56%), Gaps = 36/433 (8%)
Query: 29 EFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKL 88
+F+ +S+ +L +S L + Y ++ I+ L +++ +AV +N DY P + RD
Sbjct: 57 QFMIESLRDLKQQFDKRNSHLYLFYGDSTDVIRNLKHEVDPEAVFLNKDYTPFSKKRDSA 116
Query: 89 IKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPV 148
IK+ G F + D ++ +EI GKPYS+++ + +K ++K + P
Sbjct: 117 IKQISTEYGMDFIDFHDLLLTSPDEISTDQGKPYSVYTPFFRK------ASKVAVH-IPE 169
Query: 149 KSYLNNLVHSSKLHKIINNNIISL-NDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKN 207
+ NN ++S L ++ + + ++ GF S + G A +L + + K +
Sbjct: 170 AVHQNNY-YTSGLSTDKDDLLPKMEHEYGFHSS------VGGGRDNALAILAD-LSKFAD 221
Query: 208 YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRD 267
Y ++RNYPS T+ LS H +FGT+SIR++ I + + + QL WRD
Sbjct: 222 YEMDRNYPS-KETTRLSAHNKFGTVSIREVYHSIASELGPDHPL--------IGQLYWRD 272
Query: 268 FYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSG 327
F+ Y V KS +++++NI W SDN A WC G TG+P+ID+ + QLN +G
Sbjct: 273 FFTHAAYHNSFVFGKSLREKFENIEWSSDNEA---LSRWCAGNTGFPIIDAGMRQLNITG 329
Query: 328 YMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFR 387
YMHNR+RM+TASFL+K++ I+WKWGE YFA KL D+D NNGNWQW+AS+G SQP+FR
Sbjct: 330 YMHNRIRMITASFLVKDLHIDWKWGEKYFAQKLVDYDPCVNNGNWQWAASTGYDSQPYFR 389
Query: 388 IFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPIL 447
+FNP Q KK+D + I+I++++ +L++L IH+ LE NYP P++
Sbjct: 390 MFNPWSQQKKYDPECIYIKEWVQELNELDPVSIHN--------LETRRPPEKINYPLPMV 441
Query: 448 EHSLSKKNILKRY 460
+HS ++ L+ Y
Sbjct: 442 DHSKERQITLEMY 454
>gi|432601239|ref|ZP_19837489.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE66]
gi|431143355|gb|ELE45088.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE66]
Length = 472
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 242/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + ++ + N+ Y
Sbjct: 47 VSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGTVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S++ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYYPSLCKHRPFIVWTDRVQWQSNS---AHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|313107322|ref|ZP_07793517.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016]
gi|386063884|ref|YP_005979188.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa NCGM2.S1]
gi|310880019|gb|EFQ38613.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016]
gi|348032443|dbj|BAK87803.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa NCGM2.S1]
Length = 476
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 242/451 (53%), Gaps = 31/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R + A + I +L +L I AV +N +Y
Sbjct: 47 KVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNE 106
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + + L+ G F S+ DQ+ F +L +TG + +FS ++K C+
Sbjct: 107 ERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKV---------CH 157
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNII-SLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ Y + H + ++ + ++ +L L G A+ L +F
Sbjct: 158 ERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRL-WPAGEKVAQERLRDF 216
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + +Y+ R++P++ GTS LS +L G +S R+ + + + G TW+
Sbjct: 217 ADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWI 276
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V ++ F++E + + W A W +G TG +ID+A
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRPFREETEALRWRQ---APAELEAWQQGRTGITIIDAA 333
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL ++G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 334 MRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTG 393
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNP+ QS++FD +G FIR +LP+L+ L K IH P G+ G
Sbjct: 394 TDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAG 445
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
+YP+P+++ S++ L + +N+ R+
Sbjct: 446 VDYPRPMVDLKASRERALAAF---RNLPPRD 473
>gi|365138980|ref|ZP_09345561.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 4_1_44FAA]
gi|363654665|gb|EHL93554.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 4_1_44FAA]
Length = 480
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 132/440 (30%), Positives = 234/440 (53%), Gaps = 32/440 (7%)
Query: 28 IEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDK 87
++ + ++ E I L ++D + + + + + + + N+ YE RD
Sbjct: 59 LQSLHAALAERGIPLWVEEAD---DFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDA 115
Query: 88 LIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYP 147
++ L+ + C+ F D V+ +L G+ Y +F+ ++ +I +++
Sbjct: 116 AVENTLRDVICQGFD--DSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDG-------- 165
Query: 148 VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIK- 206
L V + K + L +L + ++ L A L F ++
Sbjct: 166 ----LPACVAAPKPRQAPARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAA 221
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKT-DCIGYFTWLSQLIW 265
+Y R++P++ GTS LS L G +S R+ + + + +H D TWL++LIW
Sbjct: 222 DYEGQRDFPAVEGTSRLSPCLAIGVLSPRQC---LHRLLTEHPAALDGGAGATWLNELIW 278
Query: 266 RDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
R+FY+ ++ YP + + F D + W ++ A W +G TG+P++D+A+ QLN
Sbjct: 279 REFYRHLMVYYPKLCKGRPFTAWTDKVAWRAEEAA---LQAWQRGETGFPIVDAAMRQLN 335
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
++G+MHNRLRM+ ASFL K++ ++W+ GE YF ++L D DLA+NNG WQW+AS+G + P
Sbjct: 336 ATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAP 395
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNP Q +KFD QG+FIR++LP+L+K+ K +H PW + +K GI L +Y +
Sbjct: 396 YFRIFNPTTQGEKFDKQGVFIRRWLPELAKVPEKALHQPWAWA----DKQGITL--DYSR 449
Query: 445 PILEHSLSKKNILKRYNFIK 464
PI++H +++ L + +
Sbjct: 450 PIVDHKQARQETLAAWEAAR 469
>gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
Length = 469
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 237/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWNVPSALAELVWHPEQT---------------FGYPRVDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRDFCRERVQDYHQARDFPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 482
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 138/439 (31%), Positives = 239/439 (54%), Gaps = 19/439 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L+ +LQ + L++ A + + + + +AV N Y+P I D I
Sbjct: 58 WLHHSLEALNRSLQKLNGRLVLASGEALEVLCAFIKESAAEAVFWNRRYDPAGISIDARI 117
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K EL+ + S+ Q++ E + ++ G PY +++ + + +E + L + P K
Sbjct: 118 KHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRA-LEGGGEPEPPLDA-PAK 175
Query: 150 SYLNNLVHSSKLH--KIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIK 206
L + S L K++ D +L + G GA+ L+ F++ ++
Sbjct: 176 LRLASQPKSEVLGSWKLLPTKPDWAGDF----VDLWT----PGEEGAQQRLHVFVEDALE 227
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWR 266
Y NR+YP+ TS LS HL G IS ++ ++ D + + ++ WR
Sbjct: 228 GYKENRDYPARPATSMLSPHLALGEISPARIWDATRGLSQRVPAADIVHF---REEIAWR 284
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
+F +L+ +P + + ++ +D W +++ +F W +G TGYP++D+ + QL
Sbjct: 285 EFSYHLLFHFPRLASANWNDRFDGFEWRNNS---GDFEAWRRGMTGYPIVDAGMRQLWRH 341
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
G+MHNR+RM+ ASFLIK++ I+W+ GE +F + L D D A+N +WQW A SG + PFF
Sbjct: 342 GWMHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFF 401
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
RIFNP++Q +KFD G ++R Y+P+L +L KYIH P++A L++AGI LG+ YPKPI
Sbjct: 402 RIFNPVLQGEKFDPDGDYVRTYVPELRELGPKYIHRPFEAPKSMLDEAGITLGQTYPKPI 461
Query: 447 LEHSLSKKNILKRYNFIKN 465
++H+ ++ L Y I++
Sbjct: 462 VDHASARNRALAAYKAIRD 480
>gi|312970785|ref|ZP_07784964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
gi|310336546|gb|EFQ01713.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
Length = 472
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 238/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--GSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
Length = 477
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 138/471 (29%), Positives = 241/471 (51%), Gaps = 32/471 (6%)
Query: 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ V ++I D+ LR+ G ++ S+ L L+ ++L + + +
Sbjct: 33 VPVVALYILDETTKG-LRAMGAASR---WWLHHSLAALGDLLRKAGANLFLAHGRTEDAV 88
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
K + + V N Y+P + D +K L+ G S+ ++ E + + +G
Sbjct: 89 AKAIDASGANCVFWNRRYDPSEVAVDARLKAALREKGLTALSFDGALLHEPSLLKTGSGG 148
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
Y +F+ + K +KV + + L + L++L S
Sbjct: 149 FYKVFTPFWKAMADKVDVRDPIDTPGQIDGWRGEL------------GGLRLDELDLLPS 196
Query: 181 NLS-SLGIK----TGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISI 234
+ G++ G GA+ L FI+ + NY R+YP TS LS HL FG I+
Sbjct: 197 KPDWAYGLRETWTPGEKGAQARLGQFIEHGLANYERQRDYPGQPSTSRLSPHLTFGEITP 256
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
F+ ++ G + +++ WR+F +L+ P++ ++F+ E+D + W
Sbjct: 257 -------FQIFAALRRSKSSGTSKFRAEIGWREFSYHLLFHNPDLSGRNFRPEFDAMSWR 309
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
D A + W +G TGYP++D+ + +L +G+MHNR+RM+ ASFLIK++ I+W+ GE
Sbjct: 310 DDIRALRT---WQRGLTGYPIVDAGMRELWRTGWMHNRVRMIVASFLIKDLMIDWRHGEK 366
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
+F + L D D A+N +WQW A SG P+FRIFNP++Q +KFD G ++R+++P++S
Sbjct: 367 WFWDTLVDADAANNPASWQWVAGSGADPAPYFRIFNPVLQGEKFDPHGDYVRQHVPEISA 426
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
L ++YIH PW+A + L+ GI+LGK YP PI++H +++ L Y +K+
Sbjct: 427 LPDRYIHRPWEAPAAVLKDKGIVLGKTYPNPIVDHGAARERALIVYQSLKD 477
>gi|432873386|ref|ZP_20093013.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE147]
gi|431404632|gb|ELG87880.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE147]
Length = 472
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 241/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 MSPRQAEFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS+ I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSE--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+ + +F W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHRPFIVWTDRVQWQRN---PAHFKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK ++KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWK----WVQKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|260853943|ref|YP_003227834.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
11368]
gi|415789825|ref|ZP_11494736.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14]
gi|417294504|ref|ZP_12081778.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 900105 (10e)]
gi|419207874|ref|ZP_13750999.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8C]
gi|419214311|ref|ZP_13757339.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8D]
gi|419225421|ref|ZP_13768308.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9A]
gi|419231285|ref|ZP_13774075.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9B]
gi|419236591|ref|ZP_13779340.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9C]
gi|419242166|ref|ZP_13784814.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9D]
gi|419253376|ref|ZP_13795921.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10A]
gi|419259425|ref|ZP_13801877.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10B]
gi|419265422|ref|ZP_13807807.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10C]
gi|419271099|ref|ZP_13813427.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10D]
gi|419282623|ref|ZP_13824839.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10F]
gi|419879000|ref|ZP_14400452.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9534]
gi|419881262|ref|ZP_14402597.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9545]
gi|419904183|ref|ZP_14423188.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9942]
gi|419906819|ref|ZP_14425687.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10026]
gi|420101941|ref|ZP_14612988.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9455]
gi|420109394|ref|ZP_14619538.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9553]
gi|420112587|ref|ZP_14622384.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10021]
gi|420121952|ref|ZP_14630984.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10030]
gi|420126811|ref|ZP_14635513.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10224]
gi|420134473|ref|ZP_14642579.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9952]
gi|424748500|ref|ZP_18176643.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424759470|ref|ZP_18187135.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425377578|ref|ZP_18761958.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EC1865]
gi|257752592|dbj|BAI24094.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O26:H11 str. 11368]
gi|323153779|gb|EFZ40026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14]
gi|378061864|gb|EHW24044.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8C]
gi|378067633|gb|EHW29746.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8D]
gi|378081009|gb|EHW42965.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9A]
gi|378081731|gb|EHW43680.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9B]
gi|378089814|gb|EHW51655.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9C]
gi|378094429|gb|EHW56227.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9D]
gi|378106210|gb|EHW67841.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10A]
gi|378115368|gb|EHW76908.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10B]
gi|378118196|gb|EHW79702.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10C]
gi|378121121|gb|EHW82579.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10D]
gi|378138593|gb|EHW99846.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10F]
gi|386262219|gb|EIJ17666.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 900105 (10e)]
gi|388333213|gb|EIK99850.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9534]
gi|388365745|gb|EIL29522.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9545]
gi|388368135|gb|EIL31785.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9942]
gi|388378192|gb|EIL40950.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10026]
gi|394390868|gb|EJE67797.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10224]
gi|394406905|gb|EJE81818.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9553]
gi|394413302|gb|EJE87344.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9455]
gi|394414257|gb|EJE88206.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10021]
gi|394421411|gb|EJE94883.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9952]
gi|394424170|gb|EJE97344.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10030]
gi|408309331|gb|EKJ26525.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EC1865]
gi|421944397|gb|EKU01651.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421947289|gb|EKU04368.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CFSAN001630]
Length = 472
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI + + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVKTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM++ASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
+L +YP+PI++H ++ L Y
Sbjct: 444 ML--DYPQPIVDHKEARLRTLAAYE 466
>gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
Length = 469
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 241/445 (54%), Gaps = 29/445 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FI++ + L L + L+ R + A++ I +L L V N DYE
Sbjct: 48 QADFIWRRLGALQQELAKLNVPLLYRQVADFHDAAEVICQLAKTLKAKQVFANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD ++ L ++++ D+ I + + G+ + +F+ +++ W+ +
Sbjct: 108 QQRDLRTEQRLAEQQIAWWAFDDKCILPPGSVRTQQGEFFKVFTPFKRAWLSLFQPPTIV 167
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
S +K + S+L I N+ + F + S + L +F
Sbjct: 168 KNSPALKGII-----PSELTDWIWNS-----EQAFDYERVDSSQWPVEFETIRNQLRDFC 217
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ ++++Y+ R++P+ GTS LS +L G +S R+ V +++ + G WLS
Sbjct: 218 RERVQDYHQWRDFPARTGTSSLSPYLAIGALSARQCVARLYR--ESAMGVLGEGAQVWLS 275
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+LIWR+FYQ ++ PN+ ++ F + ++ W +D+ + F WC+G TGYP++D+A+
Sbjct: 276 ELIWREFYQHLVAREPNLSKSRDFHEWGSHLEWWNDH---EKFQRWCEGQTGYPIVDAAM 332
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW AS+GC
Sbjct: 333 RQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSQLIDGDYAANNGGWQWCASTGC 392
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
QP+FRIFNP+ Q +KFD G FIR+++P+L LS+ YIH PW +Y + +
Sbjct: 393 DGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRGLSSAYIHQPW---TYPAVNSVL---- 445
Query: 441 NYPKPILEHSLSKKNILKRYNFIKN 465
YP P+++H ++ L+ Y K
Sbjct: 446 -YPAPLVDHKQEREVTLRLYKTAKG 469
>gi|329894045|ref|ZP_08270030.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
gi|328923217|gb|EGG30537.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
Length = 467
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 145/444 (32%), Positives = 232/444 (52%), Gaps = 34/444 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIA----SKEIKKLVIKLNIDAVMINHDYEPQA 82
R F+++++ L L + L++++ +++ L L + + N +Y
Sbjct: 51 RERFLWRNLTALKERLGELNIPLVVKHCQTFEDCVQDVPTLCEALGVTNLYANCEYPVNE 110
Query: 83 IIRDKLIKKELK-VIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKC 141
RD+ I++ L + C + + +L KTG PY++FS +++ WIE+ +++
Sbjct: 111 QKRDRAIREALADKVSCH---WHHDFGIKPLGLLTKTGNPYTVFSPFKRAWIERWRADPA 167
Query: 142 YLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ P + V S+L L K + G A L +F
Sbjct: 168 PIYPAPEPRRCSAAVPGSEL-------------LASDKQAMDQF-WPAGEDAAMNRLAHF 213
Query: 202 IK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ +I +Y R+ P+ GTS LS +L G IS R + + + G TW+
Sbjct: 214 CEDRIDHYKAKRDLPAEPGTSELSPYLAAGVISPRVCLDAAIRANRGDIHEGRQGPDTWI 273
Query: 261 SQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
S+LIWRDFY IL YP V +N+ F+ E + I W + A ++F WC+G TGYP++D+A
Sbjct: 274 SELIWRDFYIHILDTYPRVSMNRCFRVEGEKIPWRN---APEDFAAWCEGRTGYPIVDAA 330
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRM+ A FL K + I+W+ GE +F L D DL +NNG WQW+AS+G
Sbjct: 331 MRQLVQTGWMHNRLRMLVAMFLTKQLLIDWREGERFFMQHLIDGDLGANNGGWQWAASTG 390
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FRIFNPI QS+KFD G FIR+++P+L +LS+K IH P L A
Sbjct: 391 TDAAPYFRIFNPITQSQKFDASGAFIRRFVPELRELSDKDIHMPAPLMRQSLASA----- 445
Query: 440 KNYPKPILEHSLSKKNILKRYNFI 463
YP+P++E +++ L + +
Sbjct: 446 --YPEPVVELKFARERALAAFKSV 467
>gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999]
Length = 487
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 232/415 (55%), Gaps = 25/415 (6%)
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
I+ L+ + + V+ N YEP I RD IK LK + S +++E ++L K
Sbjct: 85 IESLINQYDATHVIWNRGYEPWQITRDSHIKATLKDC-VEVLSCNGHLLWEPMQVLKKDN 143
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYP--VKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
PY +F+ Y +K C +S P +S +L +++++ ++L++L
Sbjct: 144 TPYKVFTPYYRK--------GCLTRSAPRYPESIPEHLPWATRINSTNIFEPLTLDELKL 195
Query: 178 CKS----NLSSLGIKTGASGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTI 232
S + + + G GAK L +I++ Y +RN P++ GTS LS HL FG I
Sbjct: 196 MPSIQWYDTIAAQWQPGEQGAKDRLATYIEEAAGRYREDRNLPAVKGTSLLSPHLHFGEI 255
Query: 233 SIRKLVKLIFKFIKKHYKTDCIGYF--TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDN 290
S V ++ IK +K D T+LS+L WR+F +L+ +P++ ++F +++
Sbjct: 256 S----VNTVWYAIKDAFKDDPENEHADTYLSELGWREFSHYLLFHFPHIQTENFSSKFNV 311
Query: 291 ILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWK 350
W S + + W G TG P++D+ + +L +GYMHNR+RM+ SFL+KN+ I+W+
Sbjct: 312 FPWRS---SPEELKAWQFGNTGIPIVDAGMRELYQTGYMHNRVRMIVGSFLVKNLLIDWR 368
Query: 351 WGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLP 410
GE +F + L D D+A+N+ +WQW A SG + P+FRIFNPI+Q +KFD QG +++ Y P
Sbjct: 369 EGERWFWDCLLDADMAANSASWQWVAGSGADASPYFRIFNPILQGEKFDKQGDYVKHYCP 428
Query: 411 QLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+L L K+IH PW+A S L+ I+LG NYPKPI++ +S++ L + K
Sbjct: 429 ELRLLPPKFIHKPWEAPSNILQACNIVLGHNYPKPIVDLKVSRQRALDAFAVTKE 483
>gi|414162215|ref|ZP_11418462.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
gi|410879995|gb|EKS27835.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
Length = 485
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 139/439 (31%), Positives = 226/439 (51%), Gaps = 16/439 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L +L+ L++R A + +L AV P R +
Sbjct: 60 WLASSLRALDTDLKKRGQHLVLRKGDARAILPRLAKDTGALAVFWIDSEIPAEAARAQDT 119
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
+ L IG + ++ I NK G +F+ + K+ V+S + P
Sbjct: 120 AEALHEIGVETHISPSDLLASPPSIRNKEGNGLRVFTPFWKR----VRSQGDPPRPLPAV 175
Query: 150 SYLNNLVHSSKLHKIINNNIISLND--LGFCKSNLSSLGIKTGASGAKILLNNFI-KKIK 206
L V S K + + + + G + + G SGA LN+F+ + IK
Sbjct: 176 RKLPPPVASVKSENLKDWKLEPTHPDWAGGLRETWTP-----GESGAHRRLNDFLDEAIK 230
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWR 266
Y I R++P + S+LS HLRFG IS R++ +F + + +LS+L WR
Sbjct: 231 GYAIGRDFPGRDHASHLSPHLRFGEISPRQVFHAA-RFAAEQHPALSRDVEKFLSELGWR 289
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
+F + +L+ +P++ ++ + +D+ W D K W +G TGYP++D+ + +L +
Sbjct: 290 EFCRHLLFDHPDLHRRNLQSSFDDFPWRRD---AKALRAWQQGRTGYPIVDAGMRELWHT 346
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
G M NR+RMVTASFL+K++ ++W+ GE +F + L D D SN GNWQW A G + P+F
Sbjct: 347 GTMQNRVRMVTASFLVKHLLLDWREGEAWFWDTLVDADPGSNPGNWQWVAGCGADAAPYF 406
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
RIFNPI+Q +KFD G ++ K++P+L+KL IH PW A+ +L AG+ LGK YP+PI
Sbjct: 407 RIFNPILQGEKFDPDGAYVAKWVPELAKLPPALIHKPWDATPLELAAAGVTLGKTYPEPI 466
Query: 447 LEHSLSKKNILKRYNFIKN 465
++H +++ L Y K
Sbjct: 467 VDHKAARERALAAYRKTKT 485
>gi|399519482|ref|ZP_10760277.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399112578|emb|CCH36835.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 478
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 244/451 (54%), Gaps = 30/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL L + L++R ++ A ++ ++ + +I AV +N +Y
Sbjct: 48 KVDFWLRNLAELGKALAALNVPLLVRHCHDWSEAPVQVAEVCHEHDISAVHVNEEYGINE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+RD+ + L + S+ DQ++F+ +L ++G + ++S ++K E++ +
Sbjct: 108 SLRDQQVCAYLGQQAIAWHSHLDQLLFKPGSVLTRSGGYFQVYSQFRKVCYERLHTALPA 167
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS-SLGIKTGASGAKILLNNF 201
L + P ++ I + I GF + S L G A L F
Sbjct: 168 LIAPP----------KAQTPLAIGSEAIPETAEGFATPSASLRLLWPAGEEAALQRLQRF 217
Query: 202 IK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+ ++ Y R++P+ GTS LS +L G +S R+ + + + + G TW+
Sbjct: 218 SEEQVTYYKDERDFPAKPGTSQLSAYLAAGVVSPRQCLHAALAANQGEFDSGNPGVITWI 277
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ L YP V +++F+ E + + W +A ++ W +G TG P+ID+A
Sbjct: 278 NELLWREFYKHTLVGYPRVSRHRAFRLETEAVPW---RHAPEDLAAWQEGRTGLPIIDAA 334
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 335 MRQLLETGWMHNRLRMIVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTG 394
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FRIFNPI QS+KFD +G FIR+++P+L+ L+ + IH P G+
Sbjct: 395 TDAAPYFRIFNPISQSQKFDPEGQFIRQWVPELAGLNKRDIHDP-------SALGGLFAP 447
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
YP+PI++ S S++ L + KN+ R
Sbjct: 448 AGYPRPIVDLSRSRERALAAF---KNLSARE 475
>gi|331645860|ref|ZP_08346963.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M605]
gi|417661241|ref|ZP_12310822.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86]
gi|432396599|ref|ZP_19639385.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE25]
gi|432722229|ref|ZP_19957153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE17]
gi|432726771|ref|ZP_19961653.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE18]
gi|432740457|ref|ZP_19975179.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE23]
gi|432893435|ref|ZP_20105447.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE165]
gi|432989770|ref|ZP_20178437.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE217]
gi|433109992|ref|ZP_20295867.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE150]
gi|330910459|gb|EGH38969.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86]
gi|331044612|gb|EGI16739.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M605]
gi|430917571|gb|ELC38615.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE25]
gi|431268028|gb|ELF59542.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE17]
gi|431275480|gb|ELF66509.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE18]
gi|431286586|gb|ELF77412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE23]
gi|431424415|gb|ELH06511.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE165]
gi|431498007|gb|ELH77223.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE217]
gi|431630927|gb|ELI99251.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE150]
Length = 472
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 145/446 (32%), Positives = 246/446 (55%), Gaps = 33/446 (7%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L L L+ R +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAELINTQLNALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS-NLSSLGIKTGASGAKIL 197
+ P V SS I I+LN C+S + + ++ A+ A+
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLNYP--CQSFDTAHFPVEEKAAIAQ-- 211
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 212 LRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAG 269
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W +G TGYP+
Sbjct: 270 SVWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPI 326
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+
Sbjct: 327 VDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWA 386
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + EK G
Sbjct: 387 ASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKAVHEPWKWA----EKTG 442
Query: 436 IILGKNYPKPILEHSLSKKNILKRYN 461
+ L +YP+PI++H ++ L Y
Sbjct: 443 VTL--DYPQPIVDHKEARLRTLAAYE 466
>gi|414173991|ref|ZP_11428618.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
gi|410890625|gb|EKS38424.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
Length = 484
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 238/453 (52%), Gaps = 25/453 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ C+++ D+ P + I R ++ +S+ L +L L +R ++ I
Sbjct: 35 LVCLYVLDEEG-SPQHGRPIGSASRW-WLAQSLRSLQGSLTARGQSLTLRRGRPARVIAD 92
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L ++ AV N P ++ + L IG S+ ++ ++ NK G+
Sbjct: 93 LAQEIRASAVHWNESDIPGEAATEREVTTALDRIGVASRSFPSDLLVRPEKLRNKEGRGL 152
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + K+ V S Q P L + KI +++ S N L + +
Sbjct: 153 RVFTPFWKR----VLSLGDPPQPLPAPKAL------TAGPKIATDDLASWN-LEPTRPDW 201
Query: 183 SSLGIK----TGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+S G++ G + A+ L +F+ I +Y R+ P + TS LS HLRFG IS R++
Sbjct: 202 AS-GLRETWTPGEAAAQKRLKDFLDNDIASYASLRDRPDRDATSRLSPHLRFGEISPRQV 260
Query: 238 V-KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
F K + + F LS+L WR+F + +L+ +P + ++ + +D W SD
Sbjct: 261 WHSASFAAAGKPAISSSVAKF--LSELGWREFSRHLLFDHPQLAERNLQSSFDAFPWHSD 318
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
K W +G TGYP++D+ + +L +G MHNR+RMV ASFL+K++ I+W+ GE +F
Sbjct: 319 ---PKALRAWQRGQTGYPIVDAGMRELWHTGIMHNRVRMVVASFLVKHLLIDWRDGEKWF 375
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
+ L D D SN +WQW A SG + P+FR+FNPI+Q +KFD G ++ K++P+L++L
Sbjct: 376 WDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPILQGEKFDPDGAYVSKWVPELARLP 435
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
K IH PW+A+ +L AG+ LGK YP+PI++H
Sbjct: 436 AKLIHQPWEATPMELAAAGVTLGKTYPEPIVDH 468
>gi|359778384|ref|ZP_09281653.1| deoxyribodipyrimidine photo-lyase [Arthrobacter globiformis NBRC
12137]
gi|359304301|dbj|GAB15482.1| deoxyribodipyrimidine photo-lyase [Arthrobacter globiformis NBRC
12137]
Length = 474
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 230/440 (52%), Gaps = 23/440 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDY-EPQAIIRDKL 88
++ S+ L +L+ S L++R A+ I++L + + N Y +P+ I D
Sbjct: 53 WLHHSLSALGASLEARGSRLLLRRGAAASAIEELAAETGAGRLFWNRRYGQPERSI-DAG 111
Query: 89 IKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPV 148
+K+ G + S++ ++FE + +G PY +F+ + W + + L + P
Sbjct: 112 VKEWAAGQGIEATSFQANLLFEPWTVRTGSGGPYKVFTPF---WRTCLAGAEPRLPADP- 167
Query: 149 KSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK--TGASGAKILLNNFIK-KI 205
+L + + + S L L G GA L +F+ +
Sbjct: 168 PDHLPQPAAGTSGRPPAGDRLDSWRLLPRRPDWSGGLAAAWTPGEDGAHERLEDFLDGPV 227
Query: 206 KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIW 265
++Y R+ P + GTS LS HLRFG IS ++ + + +H D +G F S+L W
Sbjct: 228 EDYGKGRDLPGVEGTSRLSPHLRFGEISPFRVWHSLREQFPRHAPAD-VGIFR--SELGW 284
Query: 266 RDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNS 325
R+F +LY P++ +++++E+D+ W++ + A+ W +G TGYPL+D+ + QL
Sbjct: 285 REFCWQLLYENPDLATQNYRREFDHFAWQTPSDAE--LEAWQQGRTGYPLVDAGMRQLWQ 342
Query: 326 SGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPF 385
+G+MHNR+RM ASFL+KNM +W+ GE +F + L D D A+N NWQW A SG + P+
Sbjct: 343 TGWMHNRVRMAAASFLVKNMLADWRVGEAWFWDTLVDADAANNPANWQWVAGSGADASPY 402
Query: 386 FRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKP 445
FRIFNP+ QSKKFD G ++R Y+P+L+ L ++ +H PWK S YP+P
Sbjct: 403 FRIFNPVTQSKKFDAGGSYLRGYVPELADLDDRTVHEPWKNPS---------AAPGYPEP 453
Query: 446 ILEHSLSKKNILKRYNFIKN 465
++ S++ L+ Y +K
Sbjct: 454 LVGLQESRERALETYQRLKE 473
>gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|417818812|ref|ZP_12465432.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|421349744|ref|ZP_15800113.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|423938868|ref|ZP_17732353.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|423968686|ref|ZP_17735903.1| DNA photolyase family protein [Vibrio cholerae HE-46]
gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|340043526|gb|EGR04484.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|395956361|gb|EJH66955.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|408664649|gb|EKL35479.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|408667250|gb|EKL38000.1| DNA photolyase family protein [Vibrio cholerae HE-46]
Length = 469
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 237/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWNVPSALAELVWHPEQT---------------FDYPRIDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRDFCRERVQDYHQARDFPAQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|114046742|ref|YP_737292.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7]
gi|113888184|gb|ABI42235.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7]
Length = 493
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 232/431 (53%), Gaps = 25/431 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I+FI + + L+ L + + + + KE+ + KL ++ V + E
Sbjct: 63 QIDFIQRHVNLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINE 122
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ G + + +LN +G Y +F+ + +KW E V + +
Sbjct: 123 QKRDQACLD----AGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWRE-VAAKRAI 177
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLND-LGFCKSNLSSLGIKTGASGAKILLNNF 201
L V + L ++ K IS + F SS G AK +L F
Sbjct: 178 L-PLAVPAPLGPMLPEPK--------PISFKERFPFTSKLTSSEQWAAGEGQAKRILTAF 228
Query: 202 IK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
I+ K ++Y +R++P++ GTS +S +L G +S R+ + + + D TWL
Sbjct: 229 IQQKAQDYKQDRDFPALEGTSVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWL 288
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++LIWR+FY+ +L +P++ +F ++ D++ W ++ + FL WC+G TGYP++D+A
Sbjct: 289 NELIWREFYRHLLVAFPDLSKGHNFNRQADHVQWRNN---QAEFLAWCEGKTGYPIVDAA 345
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QLN +G+MHNRLRMV ASFL K++ I+W+WGE YF L D DLA+NNG WQWSA G
Sbjct: 346 MRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCG 405
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
C +QP+FRIFNPI QS+KFD G FIRKYLP+L+ K +H P + L + ++
Sbjct: 406 CDAQPYFRIFNPISQSEKFDPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEVQMLES 465
Query: 440 KN-YPKPILEH 449
+ YP I+EH
Sbjct: 466 DSAYPCAIVEH 476
>gi|422016104|ref|ZP_16362694.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
gi|414095551|gb|EKT57213.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
Length = 481
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 249/450 (55%), Gaps = 32/450 (7%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+I F+ +++IEL +L LI + + A++ + + DA+ NH Y
Sbjct: 51 VSPRQITFLHQNLIELRDSLAKLGIPLICQTTPDFLSAAQWVLDFAEQQQADALFFNHQY 110
Query: 79 EPQAIIRDK-LIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK 137
E RD+ LIK++ + ++ D ++ + N+ G+ Y +++ +++ ++ ++
Sbjct: 111 ELNERNRDEWLIKQQPSF---RVHAFDDALLLPPKSVSNQKGEMYQVYTPFRRAFVTQLT 167
Query: 138 SNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+S P ++ K + ++ + + + +G A
Sbjct: 168 VTD--FRSVPAPKSRGAILSIEKQQLLFEHDAVEI-----------AAHFPSGEVAALQR 214
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L F + + ++Y NR+ PS++GTS LS +L G +S R+ + + + + G
Sbjct: 215 LRLFCRERAQDYQQNRDIPSLDGTSQLSPYLAVGVLSPRQCLNRLLTENPHTFDSPDSGS 274
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
FTWL++LIWR+FY +L +P++ ++ F + +I W N + +F W G TGYP+
Sbjct: 275 FTWLNELIWREFYHHLLVAFPHLCRHQPFIEWTKHIQW---NSSDTDFNAWKNGLTGYPI 331
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN++G+MHNRLRM+TASFL+K++ I+W+ GE YF +L D LA+NNG WQWS
Sbjct: 332 VDAAMRQLNTTGWMHNRLRMITASFLVKDLLIDWRRGEQYFIQQLIDGTLAANNGGWQWS 391
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNP Q KKFD G F+R +LP+L + ++YIH+P + + E
Sbjct: 392 ASTGIDASPWFRIFNPTTQGKKFDPDGKFVRHWLPELRTVPDQYIHTPHEWA----ESTR 447
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+IL +YP PI++H ++ L+ + KN
Sbjct: 448 VIL--DYPTPIVDHKQARLMTLEAFETGKN 475
>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|448281497|ref|ZP_21472802.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|445578544|gb|ELY32948.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
Length = 468
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 234/467 (50%), Gaps = 33/467 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V FIFD +L+ R+ F+ +S+ EL + DL++ +E+ +
Sbjct: 29 VIPAFIFDPAVLE------FASPPRVAFMLESLSELRAWYRERGGDLVVATGDPREELPR 82
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ + + V N DY A RD+ +++ L G + S D ++FE I + G+ Y
Sbjct: 83 IAREHGAERVSWNRDYSGLASKRDEEVREALTDAGIEATSVDDALLFEPGSITTQQGETY 142
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+++S++ KKW ++ K + PV + +L + +++ S LGF +
Sbjct: 143 AVYSYFWKKWRDREKES-------PVSA-----PDGEQLASVSGDSLPSQEALGF--DDP 188
Query: 183 SSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ G A+ L F I Y R+ P+ + TS LS HL++GTI IR + + +
Sbjct: 189 EATIPDAGMEAARRRLETFCADPIYRYADQRDDPAADATSGLSPHLKWGTIGIRTVYEAL 248
Query: 242 FKF---IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ D F SQL WR FY +L P+ V +++ + I W++D
Sbjct: 249 DRAKSEAPDEAAADSCEEFE--SQLAWRAFYAHVLDTNPHTVTANYRSYENPIQWQTDAA 306
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
A W G TGYP++D+ + QL + +MHNRLRM+ ASFL K++ ++W+ G +F
Sbjct: 307 A---LQAWKDGKTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLTKDLMLDWREGYAWFRE 363
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
KL D D AS+ G WQW++ +G +QP+FRIFNP+ Q ++ D +IR Y+P+L+ + +
Sbjct: 364 KLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHDPDAEYIRTYVPELADVPAE 423
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH W A E+A + YP PI++H+ ++ L + +
Sbjct: 424 TIHE-WVALEPD-ERASV--APEYPDPIVDHAARREAALDMFEAARG 466
>gi|34557872|ref|NP_907687.1| deoxyribodipyrimidine photo-lyase [Wolinella succinogenes DSM 1740]
gi|34483590|emb|CAE10587.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE DNA PHOTOLYASEPHOTOREACTIVATING
ENZYME [Wolinella succinogenes]
Length = 447
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 150/421 (35%), Positives = 228/421 (54%), Gaps = 42/421 (9%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV +FIFD ++L PL EDRR+ +I+ ++ L L+ DL I Y K +
Sbjct: 25 EVLPLFIFDSHLLSPLPK----EDRRVGYIYGEVMRLKSELRARGLDLAIFYGEPLKILS 80
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L + + + DY+ A+ RD+ ++ ++ C+F D +F+ NE+L K G P
Sbjct: 81 RLK-EQGFSRLFASQDYDSYALSRDEAARE---LLDCRFVL--DNYLFDPNEVLKKEGSP 134
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKS---YLNNLVHSSKLHKIINNNIISLNDLGFC 178
Y+IFS Y Y QS + S Y L KL SL +GF
Sbjct: 135 YTIFSAY-------------YNQSLKILSEGHYAKGLDLPKKLAPYPIPAPPSLESMGFS 181
Query: 179 K-SNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
L SL I + L F KI Y ++R+ TS LS+ LRFGT+ +R++
Sbjct: 182 PLPLLESLKILP-----QKRLEEFSSKITRYALDRDSLEAEATSGLSLFLRFGTLGVREV 236
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
++ + K ++ + I + Q++WR+FY M+LY +P+ + FK + W
Sbjct: 237 IRRL-----KVWQEEGIKVAPFYRQILWREFYAMLLYHFPHSEREDFKPM--QMRWSE-- 287
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+++ W KG G PL+D+ + +LN +G+MHNR RMV ASFL KN+ ++W WGE YFA
Sbjct: 288 -SQERLERWQKGECGVPLVDAGMRELNHTGFMHNRARMVCASFLTKNLHLHWSWGERYFA 346
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+KL D+D+A N GNWQW A SG +QPFFRIFNP QS KFD +G ++++++P+L +S
Sbjct: 347 SKLLDYDVAQNAGNWQWCAGSGADAQPFFRIFNPYTQSLKFDPKGEYVKRWIPELRGIST 406
Query: 418 K 418
+
Sbjct: 407 Q 407
>gi|448612276|ref|ZP_21662501.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
gi|445741508|gb|ELZ93008.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
Length = 482
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/475 (29%), Positives = 243/475 (51%), Gaps = 33/475 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD+++L+ S R+ ++ ++ EL + ++ SDL++ +
Sbjct: 27 VAPVFVFDESVLEHAGSP------RVRYLLDALAELRASYRSLGSDLLVARGDPRTVVPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L+ + V+ N Y A RD ++ L G D + I G Y
Sbjct: 81 VATALDAERVVWNEGYSGLARERDAAVRLALDEEGVSRELVHDAIFHRPGSITTNAGDIY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK-SN 181
S+++++ KKW ++ K + YP + +LV + L + D+
Sbjct: 141 SVYTYFWKKWRDRDKPDP-----YP-EPEAGDLVDAETLETVAERCADDAFDVAVGDVPT 194
Query: 182 LSSLG--------IKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTI 232
+SSLG + G A+ L+ F + I Y +R+YP+ + TS LS L+FGTI
Sbjct: 195 ISSLGFEAPAADVVSAGTEVARDRLSAFCEDAIFRYGDDRDYPARDATSRLSTDLKFGTI 254
Query: 233 SIRKLVKLIFKFIKK--HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDN 290
IR++ + K + + F SQL WR+FY +L+ P+VV +++K+ ++
Sbjct: 255 GIREVYAATVDAREGVGGEKDESVEEFQ--SQLAWREFYTHVLWDNPSVVTENYKQYEND 312
Query: 291 ILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWK 350
I W D W G TGYP++D+ + QL YMHNR+RM+ ASFL K++ +W+
Sbjct: 313 IQWRDD---PDELAAWKDGRTGYPIVDAGMRQLKQEAYMHNRVRMIVASFLTKDLLCDWR 369
Query: 351 WGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLP 410
G ++F L+D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D G +I++Y+P
Sbjct: 370 HGYDHFREYLSDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKQYVP 429
Query: 411 QLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+L+ ++ IH + S + E+ + +YP PI++HS ++ L + +
Sbjct: 430 ELAGVTANTIHEWHEMSDPERER----VAPDYPDPIVDHSERREMALSMFETARG 480
>gi|229522729|ref|ZP_04412145.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
gi|229340714|gb|EEO05720.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
Length = 469
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 234/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + +++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLMWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWGVPSALAELVWHPEQ---------------AFDYPRIDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ + G
Sbjct: 213 LRDFCRERVQDYHQARDFPAREGTSSLSPYLAIGVLSARQCVARLYH--ESSMGEPSEGA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSLDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|424590980|ref|ZP_18030413.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
gi|408033486|gb|EKG70033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
Length = 469
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 236/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAKQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWNVPSALAELVWHPEQ---------------AFDYPRIDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LREFCRERVQDYHQARDFPAQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QAWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227119239|ref|YP_002821134.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
Length = 469
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 236/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAKQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWNVPSALAELVWHPEQ---------------AFDYPRIDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LREFCRERVQDYHQARDFPAQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QAWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---AYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|419762393|ref|ZP_14288640.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|424934425|ref|ZP_18352797.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425077629|ref|ZP_18480732.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425080535|ref|ZP_18483632.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425088262|ref|ZP_18491355.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425090596|ref|ZP_18493681.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428937323|ref|ZP_19010624.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae JHCK1]
gi|397744574|gb|EJK91785.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|405590608|gb|EKB64121.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405601354|gb|EKB74507.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405606180|gb|EKB79175.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405614280|gb|EKB87001.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407808612|gb|EKF79863.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|426296515|gb|EKV59137.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae JHCK1]
Length = 480
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 132/440 (30%), Positives = 235/440 (53%), Gaps = 32/440 (7%)
Query: 28 IEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDK 87
++ + ++ E I L ++D + + + + + + + N+ YE RD
Sbjct: 59 LQSLHAALAERGIPLWVEEAD---DFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDA 115
Query: 88 LIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYP 147
++ L+ + C+ F D V+ +L G+ Y +F+ ++ +I +++
Sbjct: 116 AVENTLRDVICQGFD--DSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDG-------- 165
Query: 148 VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIK- 206
L V + K + L +L + ++ L A L F ++
Sbjct: 166 ----LPACVAAPKPRQAPACQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAA 221
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKT-DCIGYFTWLSQLIW 265
+Y R++P++ GTS LS L G +S R+ + + + +H D TWL++LIW
Sbjct: 222 DYEGQRDFPAVEGTSRLSPCLAIGVLSPRQC---LHRLLTEHPAALDGGAGATWLNELIW 278
Query: 266 RDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
R+FY+ ++ YP + + F D + W ++ A + W +G TG+P++D+A+ QLN
Sbjct: 279 REFYRHLMVYYPKLCKGRPFTAWTDKVAWRAEEAALQA---WQRGETGFPIVDAAMRQLN 335
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
++G+MHNRLRM+ ASFL K++ ++W+ GE YF ++L D DLA+NNG WQW+AS+G + P
Sbjct: 336 ATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAP 395
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNP Q +KFD QG+FIR++LP+L+K+ K +H PW + +K GI L +Y +
Sbjct: 396 YFRIFNPTTQGEKFDKQGVFIRRWLPELAKVPEKALHQPWAWA----DKQGITL--DYSR 449
Query: 445 PILEHSLSKKNILKRYNFIK 464
PI++H +++ L + +
Sbjct: 450 PIVDHKQARQETLAAWEAAR 469
>gi|432791917|ref|ZP_20026008.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE78]
gi|432797880|ref|ZP_20031906.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE79]
gi|431341765|gb|ELG28762.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE78]
gi|431345205|gb|ELG32131.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE79]
Length = 472
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 141/448 (31%), Positives = 238/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAELINAQLNRLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDAQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +K+G+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----DKSGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI++H ++ L Y +
Sbjct: 444 TL--DYPQPIVDHKEARVRTLAAYEVAR 469
>gi|386618155|ref|YP_006137735.1| Deoxyribodipyrimidine photolyase [Escherichia coli NA114]
gi|387828689|ref|YP_003348626.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
gi|432420783|ref|ZP_19663339.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE178]
gi|432498919|ref|ZP_19740696.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE216]
gi|432557689|ref|ZP_19794379.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE49]
gi|432693459|ref|ZP_19928671.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE162]
gi|432709505|ref|ZP_19944572.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE6]
gi|432917851|ref|ZP_20122334.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE173]
gi|432925157|ref|ZP_20127248.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE175]
gi|432980177|ref|ZP_20168956.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE211]
gi|433095601|ref|ZP_20281813.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE139]
gi|433104810|ref|ZP_20290830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE148]
gi|281177846|dbj|BAI54176.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
gi|333968656|gb|AEG35461.1| Deoxyribodipyrimidine photolyase [Escherichia coli NA114]
gi|430947255|gb|ELC66962.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE178]
gi|431031820|gb|ELD44553.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE216]
gi|431094124|gb|ELD99774.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE49]
gi|431236696|gb|ELF31901.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE162]
gi|431251674|gb|ELF45681.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE6]
gi|431446725|gb|ELH27469.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE173]
gi|431448629|gb|ELH29344.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE175]
gi|431494172|gb|ELH73762.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE211]
gi|431619115|gb|ELI88040.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE139]
gi|431634109|gb|ELJ02365.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE148]
Length = 472
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L L L+ R +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAELINTQLNALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--AIDPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EK G+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWKWA----EKTGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|448424168|ref|ZP_21582294.1| deoxyribodipyrimidine photolyase [Halorubrum terrestre JCM 10247]
gi|445682833|gb|ELZ35246.1| deoxyribodipyrimidine photolyase [Halorubrum terrestre JCM 10247]
Length = 518
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 139/499 (27%), Positives = 239/499 (47%), Gaps = 60/499 (12%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF+FD ++LD D R+ + + L + + SDL++ + +L
Sbjct: 36 VFVFDPDVLD------HASDVRVRRLLDGLAALRDDYRERGSDLLVARGDPESVLPRLAD 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ + V+ N DY A RD +++ L + ++ D V+ + + I G PYS++
Sbjct: 90 ALDAERVVWNRDYSGLARERDAAVRRALDAVDVAREAHHDAVLHDPDAIRTNAGDPYSVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIIN------------------- 166
S+Y KKW ++ K + P + +LV + L ++
Sbjct: 150 SYYWKKWTDRAKDDPA-----PAPAG-EDLVDADGLADAVDAVDWGDALDAVADGGDADA 203
Query: 167 --------------NNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNIN 211
++ + DLGF + + + +G G + A+ L+ F+ + + Y
Sbjct: 204 GSVTADAGPNGLAFGDLPTPADLGFAEPD-AEIG-PPGTAAARERLDEFLDEAVFAYEAE 261
Query: 212 RNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI---KKHYKTDCIG--YFTWLSQLIWR 266
R+YP+ TS LS L++G I +R+ + + K + D + QL WR
Sbjct: 262 RDYPAEEATSRLSAFLKYGEIGVREAYAATEEAMAEAKSDARPDDAPEQVEEFQQQLAWR 321
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
+FY +L+ P VV ++K + I W D + W +G TGYP++D+ + QL
Sbjct: 322 EFYTQVLFHNPEVVTANYKAYEEGIEWRDD---PEEIAAWKRGETGYPIVDAGMRQLREE 378
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
+MHNR+RM+ ASFL K++ +W+ G ++F L D D A++NG WQW+AS+G +QP+F
Sbjct: 379 AFMHNRVRMIVASFLTKDLLADWRHGYDHFREHLADHDTANDNGGWQWAASTGTDAQPYF 438
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
RIFNP+ Q +++D +I+KY+P+L L IH + S + A YP PI
Sbjct: 439 RIFNPMTQGERYDPDAEYIKKYVPELRGLDADLIHEWHELSPTQRANA----APEYPAPI 494
Query: 447 LEHSLSKKNILKRYNFIKN 465
++HS ++ L Y +
Sbjct: 495 VDHSERREEALAMYKRARG 513
>gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|422306345|ref|ZP_16393526.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|408626618|gb|EKK99461.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
Length = 469
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 237/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWNVPSALAELVWHPEQT---------------FDYPRIDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRDFCRERVQDYHQARDFPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|448565094|ref|ZP_21636065.1| deoxyribodipyrimidine photolyase [Haloferax prahovense DSM 18310]
gi|445715753|gb|ELZ67506.1| deoxyribodipyrimidine photolyase [Haloferax prahovense DSM 18310]
Length = 482
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 137/477 (28%), Positives = 242/477 (50%), Gaps = 37/477 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD+++LD + R+ ++ ++ EL Q SDL++ +
Sbjct: 27 VAPLFVFDRDVLDHAGAP------RVRYLLDALAELRGAYQERGSDLLVARGDPRAVVPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L+ + DY A RD ++ L G D + I G Y
Sbjct: 81 VAAALDAERATWAIDYSGLARERDADVRLALDDAGVAREPVHDAIFHPPGSITTNAGDTY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLH-----------KIINNNIIS 171
S+++++ KKW ++ K + YP + ++L ++ L + ++ +
Sbjct: 141 SVYTYFWKKWRDRDKPDP-----YP-EPDADDLADANTLETAAEALADAEFDVAAGDLPT 194
Query: 172 LNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFG 230
++DLGF + + S G A+ L+ F I Y +R+YP+ + TS LS L+FG
Sbjct: 195 ISDLGFEEPSASVQ--PAGTEAARERLSAFCSDAIYRYADDRDYPTRDATSRLSTDLKFG 252
Query: 231 TISIRKLVKLIFKFIKK--HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEY 288
TI IR++ + + + + F SQL WR+FY +L +PNVV +++K+
Sbjct: 253 TIGIREVYAATAAAREGVGGERDESVEEFQ--SQLAWREFYAHVLREHPNVVTENYKEYE 310
Query: 289 DNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGIN 348
++I W D W +G TGYP++D+ + QL YMHNR+RM+ ASFL K++ +
Sbjct: 311 NDIAWRDD---ADELAAWKEGKTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCD 367
Query: 349 WKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKY 408
W+ G +F L D D A++NG WQW++S+G +QP+FRIFNP+ Q +++D G +I +Y
Sbjct: 368 WRHGYAHFREHLADHDTANDNGGWQWASSTGTDAQPYFRIFNPMTQGERYDPDGEYITRY 427
Query: 409 LPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+P+LS ++ IH + + + E+ L +YP+PI++HS ++ + + +
Sbjct: 428 VPELSDVTANTIHEWHELTDLERER----LAPDYPEPIVDHSERRERAISMFEAARG 480
>gi|171319558|ref|ZP_02908656.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
gi|171095203|gb|EDT40197.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
Length = 500
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 134/435 (30%), Positives = 224/435 (51%), Gaps = 18/435 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L L + L++ A +EI+++V AV N Y D +
Sbjct: 59 WLHGSLATLDAALARHGGRLLLLRGDARREIERVVHDTGAAAVYWNRRYAQPQRDADAAL 118
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K LK G + S ++ E E++ G P+ +F+ Y + V+ ++ P
Sbjct: 119 KASLKAHGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRA----VRRDRTVAAPLPAP 174
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGF------CKSNLSSLGIKTGASGAKILLNNFI- 202
+ + + ++L+ L L +GA L+ F+
Sbjct: 175 ERIAFHPWPAG----VRERALALDTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVH 230
Query: 203 KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQ 262
+ Y R+ P TS LS LRFG +S R++ + + G +LS+
Sbjct: 231 ASLAGYADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGVAQAGGAACAAGAEKFLSE 290
Query: 263 LIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQ 322
L WR+F ++LY +P + +F+ ++D I W D A + W +G TGYPL+D+ + +
Sbjct: 291 LGWREFSHVLLYHFPALATDNFRAQFDAIPWRDDPAALRA---WQRGLTGYPLVDAGMRE 347
Query: 323 LNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS 382
L ++G+MHNR+RMV ASFL+K++ I+W+ GE +F + L D D A+N NWQW A G +
Sbjct: 348 LWTTGWMHNRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADA 407
Query: 383 QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNY 442
P+FRIFNP+ Q +KFD QG ++R+++P+L+ L IH+PW+AS+ +L AG+ LG +Y
Sbjct: 408 APYFRIFNPVAQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDY 467
Query: 443 PKPILEHSLSKKNIL 457
P PI++H +++ L
Sbjct: 468 PAPIVDHDGARRRAL 482
>gi|293609792|ref|ZP_06692094.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
gi|427424953|ref|ZP_18915065.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-136]
gi|292828244|gb|EFF86607.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
gi|425698270|gb|EKU67914.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-136]
Length = 480
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 155/429 (36%), Positives = 242/429 (56%), Gaps = 21/429 (4%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK----KLVIKLNIDAVMINHDYEPQA 82
+I F + + +L L+ + LII+ K+I +L +LNI+ V N +
Sbjct: 51 KINFYLRQLQQLKKELEQLNIPLIIQVIPYWKDIADYIGELSTQLNIENVYSNIEIGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK ++ L G + F + D+ IF I N++ +PY +F ++K K+ +
Sbjct: 111 LKRDKTVQDFLNQQGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLP 170
Query: 143 LQSYPVKSYLNNLVHS-SKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
Q YP+ ++ S SK++ + +I + D K G + A L+ F
Sbjct: 171 -QCYPIPEKQSSYPASFSKINSLTLEDIEAFFDPSVSKEQQGLW--PAGENFALEQLDIF 227
Query: 202 IK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
IK ++ +Y + R++P++ GTS LS +L G +SIR+ ++ +F+ ++ G TWL
Sbjct: 228 IKDRLSDYKLERDFPNVRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWL 287
Query: 261 SQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
+LIWR+FYQ IL+ +P+V FKK+ I W N+ ++ + W G TG P+ID+
Sbjct: 288 DELIWREFYQHILFDFPHVSKHIPFKKDTQKIKW---NHNPEHLIAWQTGQTGIPIIDAG 344
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW AS+G
Sbjct: 345 MRQLLKTGWMHNRVRMITAMFLCKNLLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTG 404
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FRIFNPI QSKKFD G +IR+++ +L+ L NK IH P+ K I L
Sbjct: 405 TDAVPYFRIFNPIAQSKKFDPNGDYIRQWVEELAHLDNKAIHEPYST------KTNIQL- 457
Query: 440 KNYPKPILE 448
NYPKPI++
Sbjct: 458 -NYPKPIVD 465
>gi|194014306|ref|ZP_03052923.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
gi|194013332|gb|EDW22897.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
Length = 477
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 217/404 (53%), Gaps = 26/404 (6%)
Query: 68 NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSF 127
+I AV N D RDK + L+ G +++D + +IL G Y +F+
Sbjct: 93 DIKAVFFNEDEVGIGQRRDKQVTDFLEKKGIHVSTWQDTHLHGARDILKADGSHYQVFTP 152
Query: 128 YQKKWIEK-----VKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
Y + W ++ +K +K + S + + L + N+ + L + C
Sbjct: 153 YYQSWRKQEKQPVIKVDKSFFSS-------EHTICDEPLSQKGNDKLREL--IKGCSRKF 203
Query: 183 SSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+G + A L+ FI K++ Y+ R+ PS+ GTS LS L+ GTISIR + I
Sbjct: 204 DQIG----SDKAMNTLHQFIQKRLTRYHEKRDIPSVFGTSKLSRFLKTGTISIRTIFHAI 259
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
++ + Y+ + G T++ +L WRDFY MI YP + K + + W D
Sbjct: 260 YE--EALYEDE--GRETFIKELAWRDFYHMIYAHYPEMKEKEINSAFQGMKWNEDETL-- 313
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
F WCKG TG+PL+D+ + QLN G+MHNRLRMVTASFL K+ I+W+ GE+YFA KL
Sbjct: 314 -FEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTASFLTKDYLIDWRKGESYFAKKLV 372
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D+D ASN G +QW+AS G + P+FRIFNP QSK+FD G IRKY+P+L ++ K+IH
Sbjct: 373 DYDEASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRFDPSGELIRKYVPELERVDEKWIH 432
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
P K + K+G +LG YP P ++H +K + + K
Sbjct: 433 EPSKMPIDEQLKSGCVLGDTYPLPAVDHQERRKKAISLFEEAKQ 476
>gi|15800411|ref|NP_286423.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EDL933]
gi|12513619|gb|AAG55031.1|AE005249_2 deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli O157:H7 str. EDL933]
Length = 472
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 240/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + ++ + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ F D + W+ + + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQXN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRNVPGKSVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|331672227|ref|ZP_08373018.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280]
gi|331070422|gb|EGI41786.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280]
Length = 472
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 237/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAELINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDAQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|419828231|ref|ZP_14351722.1| DNA photolyase family protein [Vibrio cholerae HC-1A2]
gi|419833153|ref|ZP_14356614.1| DNA photolyase family protein [Vibrio cholerae HC-61A2]
gi|422918665|ref|ZP_16952966.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02A1]
gi|423779915|ref|ZP_17713999.1| DNA photolyase family protein [Vibrio cholerae HC-55C2]
gi|423839645|ref|ZP_17717748.1| DNA photolyase family protein [Vibrio cholerae HC-59A1]
gi|423867628|ref|ZP_17721422.1| DNA photolyase family protein [Vibrio cholerae HC-60A1]
gi|423999226|ref|ZP_17742419.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02C1]
gi|424011242|ref|ZP_17754110.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55B2]
gi|424021069|ref|ZP_17760839.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-59B1]
gi|424626283|ref|ZP_18064733.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-50A1]
gi|424627178|ref|ZP_18065542.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-51A1]
gi|424630973|ref|ZP_18069196.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-52A1]
gi|424637890|ref|ZP_18075887.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55A1]
gi|424641791|ref|ZP_18079663.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A1]
gi|424646307|ref|ZP_18084035.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A1]
gi|443525106|ref|ZP_21091302.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-78A1]
gi|341634315|gb|EGS59075.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02A1]
gi|408010060|gb|EKG47937.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-50A1]
gi|408021264|gb|EKG58528.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A1]
gi|408021477|gb|EKG58729.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55A1]
gi|408029047|gb|EKG65873.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-52A1]
gi|408041001|gb|EKG77142.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A1]
gi|408061060|gb|EKG95655.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-51A1]
gi|408623304|gb|EKK96258.1| DNA photolyase family protein [Vibrio cholerae HC-1A2]
gi|408638621|gb|EKL10508.1| DNA photolyase family protein [Vibrio cholerae HC-55C2]
gi|408647223|gb|EKL18751.1| DNA photolyase family protein [Vibrio cholerae HC-60A1]
gi|408648057|gb|EKL19488.1| DNA photolyase family protein [Vibrio cholerae HC-59A1]
gi|408650477|gb|EKL21752.1| DNA photolyase family protein [Vibrio cholerae HC-61A2]
gi|408849615|gb|EKL89628.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02C1]
gi|408864943|gb|EKM04356.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-59B1]
gi|408870969|gb|EKM10231.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55B2]
gi|443456469|gb|ELT20140.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-78A1]
Length = 469
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 142/460 (30%), Positives = 237/460 (51%), Gaps = 59/460 (12%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELVALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIE-------- 134
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+
Sbjct: 108 QHRDQSAQQLLTEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 135 --------KVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG 186
V S L +P +++ V S+ L D FC+
Sbjct: 168 KNRPAALWNVPSTLAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRD--FCR------- 218
Query: 187 IKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
+++++Y+ R++P+ GTS LS +L G +S R+ V ++
Sbjct: 219 ----------------ERVQDYHQARDFPAREGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLN 305
++ G WLS+LIWR+FYQ ++ PN+ ++ F K + W +DN + F
Sbjct: 263 MGELSE--GAQVWLSELIWREFYQHLVAIEPNLSKSRDFVKWGARLEWCNDN---EKFQL 317
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
WC+G TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D
Sbjct: 318 WCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDY 377
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
A+NNG WQW AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW
Sbjct: 378 AANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW- 436
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+Y + + YP +++H ++ L+ Y K
Sbjct: 437 --TYPAVNSVL-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|332535427|ref|ZP_08411214.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035151|gb|EGI71663.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
ANT/505]
Length = 464
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 226/400 (56%), Gaps = 25/400 (6%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR+ ++ + + I L ++ + ++E+ ++ V+ N +YE + R
Sbjct: 54 RRVAYLQSQLADYGITLHIIEAP---SFCDCTRELINFCKANDVKHVIANTEYELNEVNR 110
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
DK I E + F Y+ +I + N++ + Y +F+ +++ W+++ + L
Sbjct: 111 DKAILHECDELSITFTLYEGDLIAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQ 170
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KK 204
+P+ S + I ++ KS+ S +++NFI K
Sbjct: 171 WPLTS-----------------DPIEFDESDLLKSDGCSDKWPVDDETLSTVVDNFICDK 213
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ +Y+ R+ PS+ GTS LS +L G +S ++L+ I + T FTW+++L+
Sbjct: 214 LTSYDDQRDIPSVKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELV 273
Query: 265 WRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+FY+ ++ +P + +F ++Y+ ++W ++ +F WC+G TGYPL+D+A++QL
Sbjct: 274 WREFYRHLIAEFPKLSRGDNFNEKYNAVVWRK---SESDFKAWCEGRTGYPLVDAAMLQL 330
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G+MHNRLRMV ASFL K++ I+W+ GE +F L D DLASNNG WQW+AS+GC +Q
Sbjct: 331 KQTGWMHNRLRMVVASFLTKHLLIDWREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQ 390
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
P+FR+FNPI QS++FD G FIRKYLP+L + +K+IH P
Sbjct: 391 PYFRVFNPIRQSERFDPTGKFIRKYLPELENVPDKHIHFP 430
>gi|338974956|ref|ZP_08630311.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
gi|338231555|gb|EGP06690.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
Length = 488
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 140/428 (32%), Positives = 234/428 (54%), Gaps = 27/428 (6%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAV-MINHDYEPQ-AIIRDK 87
++ +S+ L +L L++R A++ I L + +V I D Q A+ RD
Sbjct: 63 WLAQSLRSLQASLAARGQTLVLRKGAAARVISDLAQDIEAASVHWIESDVPSQSAMERDV 122
Query: 88 LIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYP 147
+ LK IG + ++ ++ + + NK G+ +F+ + K+ + S Q P
Sbjct: 123 TVA--LKEIGVQARGFRGDLLVKPASLRNKEGRGLRVFTPFWKR----ILSLGDPPQPLP 176
Query: 148 VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK----TGASGAKILLNNFIK 203
L + ++++ S N L + + G++ G S A+ L++F++
Sbjct: 177 APKKLK------PGPAVASDDLASWN-LEPKHPDWAG-GLRDTWTPGESAAQTRLHDFLE 228
Query: 204 K-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI-FKFIKKHYKTDCIGYFTWLS 261
IK Y R+ P +GTS LS HLRFG IS R++ F +K +G F LS
Sbjct: 229 TGIKGYATLRDRPDRDGTSRLSPHLRFGEISPRQVWHAANFAAAQKPAIASDVGKF--LS 286
Query: 262 QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAII 321
+L WR+F + +L+ P++ K+ + +D W D K W +G TGYP++D+ +
Sbjct: 287 ELGWREFSRHLLFDLPDLAEKNLQSSFDAFPWRRD---AKALRAWQRGRTGYPIVDAGMR 343
Query: 322 QLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCS 381
+L +G MHNR+RMV ASFL+K++ I+W+ GE +F + L D D SN +WQW A SG
Sbjct: 344 ELWHTGVMHNRVRMVVASFLVKHLLIDWRHGEKWFWDTLVDADPGSNPASWQWVAGSGAD 403
Query: 382 SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKN 441
+ P+FR+FNP++Q +KFD G ++ +++P+L++LS K IH PW+A+ +L AG+ LGK
Sbjct: 404 AAPYFRVFNPVLQGEKFDPDGAYVSRWVPELARLSAKLIHQPWEATPMELAAAGVTLGKT 463
Query: 442 YPKPILEH 449
YP+P+++H
Sbjct: 464 YPEPMVDH 471
>gi|422782518|ref|ZP_16835303.1| DNA photolyase [Escherichia coli TW10509]
gi|323976322|gb|EGB71412.1| DNA photolyase [Escherichia coli TW10509]
Length = 472
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 141/448 (31%), Positives = 242/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 MSPRQAEFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GGPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLL--AEQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYHPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNSSG+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSSGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +K+G+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----DKSGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI++H ++ L Y +
Sbjct: 444 TL--DYPQPIVDHKEARVRTLAAYEAAR 469
>gi|384518625|ref|YP_005705930.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62]
gi|323480758|gb|ADX80197.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62]
Length = 477
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 217/399 (54%), Gaps = 26/399 (6%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK--SNLSSLGIK 188
KW E K PV S KI + + + + + + +
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSACLFPEEEAAYREQIARIPLTHYS 197
Query: 189 TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 198 VGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASV--- 254
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F+ W
Sbjct: 255 ---PSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWIND---PEMFVKWQ 308
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+WGE YF L D+D A+
Sbjct: 309 KGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAAN 368
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P +
Sbjct: 369 NIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMN 428
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + LG+NYPKPI+ ++ SKK L Y K I
Sbjct: 429 EALQTQYHVHLGENYPKPIVNYASSKKQTLFLYEASKEI 467
>gi|302924301|ref|XP_003053859.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734800|gb|EEU48146.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 597
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 153/445 (34%), Positives = 237/445 (53%), Gaps = 21/445 (4%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++F+ +++ L +L D L + + I +++L + N +YE
Sbjct: 154 RVDFMLRTLAVLKEDLAKLDIPLYVETVEKRRNIPDRILELMDEWGASHMYANMEYEVDE 213
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + ++ G F + D + ++ GK Y++++ + + W+ + N
Sbjct: 214 LRREAAMIRDFAENGKAFEAVHDTCVVPPGKLQTGAGKQYAVYTPWYRAWVAHIHENPDL 273
Query: 143 LQSY--PVKSYLNNLVHSSKLHKIINNNIISLNDLGFC-KSNLSSLGIKTGASGAKILLN 199
L+ Y P K+ + KL I + L K L SL G AK L+
Sbjct: 274 LELYDPPEKNPASARKTFKKLFDIDIPDAPKNKQLDTEEKKRLRSL-WPCGEHEAKKRLD 332
Query: 200 NFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK-KHYKTDCIGYF 257
F ++ I NY+ RN PS GTS LS+HL GTIS R V+ K K G
Sbjct: 333 KFCEEMIGNYHKKRNIPSDLGTSCLSVHLASGTISARTCVRTARDRNKTKKLNAGSEGIQ 392
Query: 258 TWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TW+S++ WRDFY+ +L +P V +NK FK EY NI W +Y ++ F WC+G TG+P++
Sbjct: 393 TWISEVAWRDFYKHVLVNWPYVCMNKPFKPEYSNISW---SYDEEQFAAWCEGRTGFPIV 449
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ Q+ GYMH+R RM+ A FL K++ I+W+ GE +F L D D ASNNG W +SA
Sbjct: 450 DAAMRQMKHLGYMHSRCRMIVACFLAKDLLIDWRKGERFFMESLIDGDFASNNGGWGFSA 509
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW-KASSYKLEKAG 435
S G QP+FRIFNP++QS+KFD G +IRK++P+L + K +H P+ + + K +K G
Sbjct: 510 SVGVDPQPYFRIFNPLLQSEKFDPDGDYIRKWVPELKDCNKKEVHDPYNRGAGPKAKKNG 569
Query: 436 IILGKNYPKPILEHSLSKKNILKRY 460
YPK I+EH ++ L+ Y
Sbjct: 570 ------YPKAIVEHKGCRERALEAY 588
>gi|301020834|ref|ZP_07184898.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1]
gi|419917767|ref|ZP_14435992.1| deoxyribodipyrimidine photolyase [Escherichia coli KD2]
gi|300398480|gb|EFJ82018.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1]
gi|388393155|gb|EIL54545.1| deoxyribodipyrimidine photolyase [Escherichia coli KD2]
Length = 472
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 237/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAELINAQLNRLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDAQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQVWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|220905687|ref|YP_002480998.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
Length = 475
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 147/470 (31%), Positives = 237/470 (50%), Gaps = 54/470 (11%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D N+L+ + + R+ ++ S+ L S L+I + + I +
Sbjct: 31 VVGVFCLDPNLLE----RDDVAPARVAYMIGSLQHLQQQYVQSGSQLLILHQQPTIAIPQ 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L AV N D EP + RD+ ++ L+ +G + ++ DQ++ I +G+ Y
Sbjct: 87 LATALQAKAVFWNWDVEPYSQERDRTVQTALETVGIEVQNFWDQLLHPPAAIKTGSGEAY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN----NIISLNDLGFC 178
++FS + + W + K PV S + + + + + DLGF
Sbjct: 147 TVFSPFWRNWSRQPKEP-------PVPSLATATGLTPTEQQAADQVGAIALPTAKDLGFI 199
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ L ++ G + A+ L F ++ I Y RN+P+ GTS LS L+FG + IR +
Sbjct: 200 WD--TPLPLEPGETAAQERLEQFCQRAIYAYQQERNFPATTGTSQLSAALKFGVLGIRTV 257
Query: 238 ---VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
+ + + D I TW +L WR+FYQ LY +P + ++++ + W+
Sbjct: 258 WATTQSALESSRSQEAEDSIQ--TWQQELAWREFYQHALYWFPALAEGAYRQPFKTFPWQ 315
Query: 295 S-DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
+ +Y F WC+G TGYP++D+A+ Q+N+ G+MHNR RM+ ASFL K++ I+ +WGE
Sbjct: 316 NRPDY----FQAWCEGRTGYPIVDAAMRQMNTIGWMHNRCRMIVASFLTKDLLIDPRWGE 371
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YF KL D DLA+NNG WQWSASSG +P RIFNP QS+KFD + +IR++LP+L
Sbjct: 372 KYFMQKLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDPEADYIREWLPELR 430
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGK---------NYPKPILEHSLSKK 454
+E A ++ GK YP I++H ++
Sbjct: 431 ----------------SVETADLVTGKISLEERDRCGYPLAIVDHHHQQR 464
>gi|365887145|ref|ZP_09426019.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
gi|365337300|emb|CCD98550.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
Length = 481
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 136/469 (28%), Positives = 241/469 (51%), Gaps = 27/469 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V C +I+D+ LR G ++ +S+ L +L+ +DLIIR A++ + +
Sbjct: 32 VVCSYIYDQESSG-LRHLGAATR---WWLAQSLRALQADLKTLGADLIIRRGRAAQVLVE 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + AV N + ++ L IG + D ++ + + K G+
Sbjct: 88 LARETRASAVYWNDVAQAGPRRVASSVEAGLGEIGVASRVFPDDLLVDPATMSGKDGRGP 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + K+ + K L +L + N +++++L +
Sbjct: 148 RVFTPFWKRVLALGDPPKP-------------LPTPGRLAAVPNVVSLTVDELMLEPTRP 194
Query: 183 SSLG-----IKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
G + G A+ L +F++ + +Y +R+ P I+ TS LS HLRFG IS R+
Sbjct: 195 DWAGGLRATWQAGERAAQQRLGSFLESAVGSYAGDRDRPDIDATSRLSPHLRFGEISPRQ 254
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ +F + G +LS++ WR+F + +LY P++ ++ + +D W D
Sbjct: 255 -IWYAARFAAEERPALAKGIDKFLSEIGWREFSRHLLYNNPDLATRNLQPSFDAFPWTQD 313
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
+ A W +G TGYP++D+ + +L +G MHNR+RMV AS L+K++ ++W+ GE +F
Sbjct: 314 DAA---LAAWQRGRTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKHLLLDWRQGEQWF 370
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
+ L D D SN +WQW A SG + P+FR+FNP++Q +KFD G ++R+++P+L++L
Sbjct: 371 WDTLVDADAGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSYVRRWVPELARLP 430
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH PW A +L +AG+ LG++YP PI+EH ++ L Y ++
Sbjct: 431 AGLIHQPWAAKPLELAEAGVTLGRSYPAPIVEHKHGRERALAAYASLRT 479
>gi|170703393|ref|ZP_02894172.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
gi|170131701|gb|EDT00250.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
Length = 505
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 130/416 (31%), Positives = 218/416 (52%), Gaps = 18/416 (4%)
Query: 49 LIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVI 108
L++ A +EI+++V AV N Y D +K LK G + S ++
Sbjct: 78 LLLLRGDAQREIERVVHDTGAAAVYWNRRYAQPQRDADAALKATLKARGLEVESSNGSLL 137
Query: 109 FEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN 168
E E++ G P+ IF+ Y + V+ ++ P + + + +
Sbjct: 138 NEPWEVMTGAGTPFQIFTAYWRA----VRRDRTVAAPLPEPERIAFHPWPAGMRE----R 189
Query: 169 IISLNDLGF------CKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTS 221
++L+ L L +GA L+ F+ + Y +R+ P TS
Sbjct: 190 ALALDTLALRPHAPDWAGGLRDAWPTPDEAGAHAGLDAFVHASLAGYADSRDRPGQPATS 249
Query: 222 YLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVN 281
LS LRFG +S R++ + + G +LS+L WR+F ++LY +P +
Sbjct: 250 RLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGWREFSHVLLYHFPALAT 309
Query: 282 KSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFL 341
+F+ ++D + W D A + W +G TGYPL+D+ + +L ++G+MHNR+RMV ASFL
Sbjct: 310 DNFRAQFDAMPWRDDPAALRA---WQRGLTGYPLVDAGMRELWTTGWMHNRVRMVVASFL 366
Query: 342 IKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQ 401
+K++ I+W+ GE +F + L D D A+N NWQW A G + P+FRIFNP+ Q +KFD Q
Sbjct: 367 VKHLLIDWRVGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFNPVTQGRKFDPQ 426
Query: 402 GIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNIL 457
G ++R+++P+L+ L IH+PW+AS+ +L AG+ L +YP PI++H +++ L
Sbjct: 427 GAYVRRWVPELAGLDAAAIHAPWEASTAQLAAAGVRLALDYPAPIVDHDGARRRAL 482
>gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
Length = 469
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 238/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ + V S L LV H + F + S +
Sbjct: 168 KNRPVALWNVPSALAELVWHPEQT---------------FDYPRVDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRDFCRERVQDYHQARDFPAQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|365880713|ref|ZP_09420069.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
gi|365291224|emb|CCD92600.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
Length = 422
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/436 (30%), Positives = 228/436 (52%), Gaps = 27/436 (6%)
Query: 38 LSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYE--PQAIIRDKLIKKELKV 95
L LQ +DL+IR A+K + +L + AV N + P+ + ++ L
Sbjct: 4 LRAELQALGTDLVIRRGPAAKVLGQLARETEAGAVYWNDVAQAGPRGVAAS--VEAGLGD 61
Query: 96 IGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNL 155
IG + D ++ + + K G+ +F+ + K+ P K L
Sbjct: 62 IGVASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKR---------VLALGDPAKP----L 108
Query: 156 VHSSKLHKIINNNIISLNDLGFCKSNLS-SLGIKT----GASGAKILLNNFIK-KIKNYN 209
+L + + +++L + + G++T G A+ L F++ + +Y
Sbjct: 109 PTPVRLPPVAGIASLGIHELALEPTRPDWAGGLRTTWQPGERTAQQRLRGFLESAVSSYA 168
Query: 210 INRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFY 269
+R+ P I+ TS LS HLRFG IS R++ +F + G +LS++ WR+F
Sbjct: 169 ADRDRPDIDATSRLSPHLRFGEISPRQIWHAA-RFAAEERPALAKGIDKFLSEVGWREFS 227
Query: 270 QMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYM 329
+ +LY P++ ++ + +D W D+ A W +G TGYP++D+ + +L +G M
Sbjct: 228 RHLLYNNPDLATRNLQPSFDPFPWTQDDAA---LAAWQRGQTGYPIVDAGMRELWHTGSM 284
Query: 330 HNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIF 389
HNR+RMV AS L+K++ I+W+ GE +F + L D D SN +WQW A SG + P+FR+F
Sbjct: 285 HNRVRMVAASLLVKHLLIDWRQGEQWFWDTLVDADAGSNPASWQWVAGSGADAAPYFRVF 344
Query: 390 NPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
NP++Q +KFD G ++R+++P+LS+L IH PW A +L +AG+ LG++YP PI++H
Sbjct: 345 NPVLQGEKFDANGSYVRRWVPELSRLPAGLIHQPWAAKPLELAEAGVTLGRSYPAPIVDH 404
Query: 450 SLSKKNILKRYNFIKN 465
++ L Y ++
Sbjct: 405 KHGRERALAAYASLRT 420
>gi|422763846|ref|ZP_16817599.1| DNA photolyase [Escherichia coli E1167]
gi|324116248|gb|EGC10169.1| DNA photolyase [Escherichia coli E1167]
Length = 472
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/445 (33%), Positives = 238/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W KG TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQKGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+ I++H ++ L Y
Sbjct: 444 KL--DYPQLIVDHKEARLRTLAAYE 466
>gi|238893748|ref|YP_002918482.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402781760|ref|YP_006637306.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|238546064|dbj|BAH62415.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402542633|gb|AFQ66782.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
Length = 480
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/393 (32%), Positives = 216/393 (54%), Gaps = 29/393 (7%)
Query: 75 NHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIE 134
N+ YE RD ++ L+ + C+ F D V+ +L G+ Y +F+ ++ +I
Sbjct: 103 NYQYEFNERQRDAAVENTLRDVICQGFD--DSVLLPPGSVLTGGGEMYKVFTPFKNAFIR 160
Query: 135 KVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGA 194
+++ L V + K + L +L + ++ L A
Sbjct: 161 RLRDG------------LPACVAAPKPRQAPARQAPPLPELNYPQTPFDGLLFAADEKTA 208
Query: 195 KILLNNFIKKIK-NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKT-D 252
L F ++ +Y R++P++ GTS LS L G +S R+ + + + +H D
Sbjct: 209 LARLRAFCQQAAADYEGQRDFPAVEGTSRLSPCLAIGVLSPRQC---LHRLLTEHPAALD 265
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYT 311
TWL++LIWR+FY+ ++ YP + + F D + W ++ A W +G T
Sbjct: 266 GGAGATWLNELIWREFYRHLMVYYPKLCKGRPFTAWTDKVAWRAEEAA---LQAWQRGET 322
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
G+P++D+A+ QLN++G+MHNRLRM+ ASFL K++ ++W+ GE YF ++L D DLA+NNG
Sbjct: 323 GFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQLIDGDLAANNGG 382
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL 431
WQW+AS+G + P+FRIFNP Q +KFD QG+FIR++LP+L+K+ K +H PW +
Sbjct: 383 WQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFIRRWLPELAKVPEKALHQPWAWA---- 438
Query: 432 EKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+K GI L +Y +PI++H +++ L + +
Sbjct: 439 DKQGITL--DYSRPIVDHKQARQETLAAWEAAR 469
>gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4]
gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4]
Length = 483
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 244/445 (54%), Gaps = 22/445 (4%)
Query: 21 GIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEP 80
G + + ++ S++ L +LQ+Y S L++R + ++ L+ + AV N Y+P
Sbjct: 49 GPLGPAQAWWLHHSLVSLDQSLQSYGSRLVLRRGPPGQVLRHLIEETGSKAVHWNRRYDP 108
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
+ D +K L+ G + S+ ++ E +++ +G P+ +++ + + +EK
Sbjct: 109 SGMAIDAELKAALRSDGLEATSHAGFLLHEPSKVKTGSGGPFRVYTPFWRA-LEKQGDPP 167
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN-DLGFCKSNLSSLGIKTGASGAKILLN 199
++ L+N H ++ + ++ D S + + G GA+ L+
Sbjct: 168 PPVER---PKTLHNPAHWPDSDRLEDWQLLPTKPDWAKEFSEIWT----PGEPGAQDKLS 220
Query: 200 NFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
FI +K Y R++P++ TS LS HL G IS ++ + TD +F
Sbjct: 221 QFIDHGLKGYRTQRDFPALPHTSGLSPHLALGEISPARIWHATIG-LGDDVSTDDYVHFR 279
Query: 259 WLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN--FLN-WCKGYTGYPL 315
+L+WR+F +L+ + ++ ++++ +++ W KKN FL+ W +G TGYP+
Sbjct: 280 --KELVWREFSYHLLFHFADLASQNWNDRFNDFPW------KKNAEFLSAWQRGQTGYPI 331
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL G MHNR+RM+ ASFLIK++ I+W+ GE +F L D D ASN +WQW
Sbjct: 332 VDAGMRQLWRHGVMHNRVRMIVASFLIKDLMIDWREGEAWFRYTLVDADPASNAASWQWV 391
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
A SG + PFFRIFNPI QS+KFD G +IR+++P+L+KL N IH P++A + LEKAG
Sbjct: 392 AGSGADASPFFRIFNPITQSEKFDPDGDYIRQFVPELAKLPNNLIHRPFEAPAPLLEKAG 451
Query: 436 IILGKNYPKPILEHSLSKKNILKRY 460
I LGK YP P+++H ++ L+ Y
Sbjct: 452 ITLGKTYPAPLVDHKRARAVALEAY 476
>gi|77362362|ref|YP_341936.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
TAC125]
gi|76877273|emb|CAI89490.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
haloplanktis TAC125]
Length = 468
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/400 (34%), Positives = 226/400 (56%), Gaps = 21/400 (5%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RRI ++ + + + I L D+ +A ++ N+ V+ N +YE + R
Sbjct: 54 RRITYLHQQLADHGITLHIIDAPY---FADCETQLIDFCKANNVKHVIANTEYELNEVNR 110
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
DK I + + F Y+ +I + N++ + Y +F+ +++ W+++ L
Sbjct: 111 DKAILAKCDELSITFTLYEGDLIAPVGSVKNQSNEMYKVFTPFKRAWLKQYIEVHFSLPQ 170
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KK 204
+PV+ + +S N+ K + SS +++NFI K
Sbjct: 171 WPVE-------------HVSGGAQLSKNETNLLKGDSSSEKWPVDDKTLATVVDNFICDK 217
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ +Y+ +R+ PSI GTS LS +L G IS ++L+ I + T FTW+++LI
Sbjct: 218 LTSYDDHRDIPSIKGTSGLSPYLALGIISTKQLLINIQQRYPDILSTSKSKTFTWVNELI 277
Query: 265 WRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+FY+ ++ +P + +F ++Y+ ++W S + +F WC+G TGYPL+D+A+ QL
Sbjct: 278 WREFYRHLIAQFPKLSRGDNFNEKYNAVVWRSSD---DDFKAWCEGRTGYPLVDAAMRQL 334
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G+MHNRLRMV ASFL K++ I+W+ GE +F L D DLASNNG WQW+AS+GC +Q
Sbjct: 335 LQTGWMHNRLRMVVASFLTKHLLIDWRKGERFFMQHLIDGDLASNNGGWQWAASTGCDAQ 394
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
P+FR+FNPI QS++FD G FIRKY+P+L + +K+IH P
Sbjct: 395 PYFRVFNPIRQSERFDPNGEFIRKYIPELENVPDKHIHFP 434
>gi|56807956|ref|ZP_00365772.1| COG0415: Deoxyribodipyrimidine photolyase [Streptococcus pyogenes
M49 591]
Length = 381
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/380 (34%), Positives = 208/380 (54%), Gaps = 24/380 (6%)
Query: 72 VMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKK 131
V N+D +RD+ + K G +Y+D + EI+N++G+PY +F+ Y +
Sbjct: 22 VYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRX 81
Query: 132 WIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGA 191
W Q+YP ++ + + + + + + F + A
Sbjct: 82 W-----------QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDEA 130
Query: 192 SGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYK 250
S LN FI+ ++ Y+ NR++P+ GTS LS LR G I IR + + +
Sbjct: 131 SKQ---LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ------A 181
Query: 251 TDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGY 310
+ +G T+L +L WRDFY M+ YP+ + +K + I W ++ F W +G
Sbjct: 182 PNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNN---PDWFQLWKEGK 238
Query: 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNG 370
TGYP++D+A++QL +G+MHNRLRM+ ASFL K++ +W+ GE YF +L D+D ASN G
Sbjct: 239 TGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIG 298
Query: 371 NWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYK 430
WQW+AS+G + P+FRIFNP+ Q K+FD +G FI+ YLPQL + KY+H PWK
Sbjct: 299 GWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNL 358
Query: 431 LEKAGIILGKNYPKPILEHS 450
E I+G +Y +PI++H+
Sbjct: 359 QESVSCIIGTDYAQPIVDHA 378
>gi|392532976|ref|ZP_10280113.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas arctica A
37-1-2]
Length = 464
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/400 (32%), Positives = 225/400 (56%), Gaps = 25/400 (6%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR+ ++ + + I L ++ ++ ++E+ ++ V+ N +YE + R
Sbjct: 54 RRVTYLQSQLADYGITLHVIEAP---SFSDCTRELIDFCKANDVKHVIANTEYELNEVNR 110
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
DK I E + F Y+ +I + N++ + Y +F+ +++ W+++ + L
Sbjct: 111 DKAILHECDELSITFTLYEGDLIAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQ 170
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KK 204
+P+ S ++ G KS+ S +++NFI K
Sbjct: 171 WPLTS-----------------EPTKFDESGLLKSDGCSDKWPVDDETLSTVVDNFICDK 213
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ +Y+ R+ PS+ GTS LS +L G +S ++L+ I + T FTW+++L+
Sbjct: 214 LTSYDDQRDIPSVKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELV 273
Query: 265 WRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+FY+ ++ +P + +F ++Y+ ++W ++ F WC+G TG+PL+D+A++QL
Sbjct: 274 WREFYRHLIAEFPKLSRGDNFNEKYNAVVWRK---SENEFTAWCEGRTGFPLVDAAMLQL 330
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G+MHNRLRMV ASFL K++ I+W+ GE +F L D DLASNNG WQW+AS+GC +Q
Sbjct: 331 KQTGWMHNRLRMVVASFLTKHLLIDWREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQ 390
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
P+FR+FNPI QS++FD G FIRKYLP+L + +K+IH P
Sbjct: 391 PYFRVFNPIRQSERFDPTGKFIRKYLPELENVPDKHIHFP 430
>gi|315123469|ref|YP_004065475.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp.
SM9913]
gi|315017229|gb|ADT70566.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp.
SM9913]
Length = 464
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 224/400 (56%), Gaps = 25/400 (6%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR+ +I + + E INL ++ + ++ + I ++ N +YE R
Sbjct: 54 RRVSYIREKLAEYGINLHVIEAPY---FTDCQTKLLDFCQQYEIKHIIANKEYELNEFNR 110
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
DK I+ + F Y+ +I + + + Y +F+ +++ W+++ + L S
Sbjct: 111 DKAIQAQCDQQQITFTLYEGDIIAPVGSVRTQNNEMYKVFTPFKRAWLKQYQDTHFSLVS 170
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KK 204
+P+ S N I + S+ SS +++NFI K
Sbjct: 171 WPLSS-----------------NPIDIESCELLSSDDSSKKWPVDDDTLASVVDNFIHDK 213
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ +Y+ R+ PS+ GTS LS +L G +S ++L+ I + T FTW+++LI
Sbjct: 214 LASYDDVRDIPSVKGTSGLSPYLALGVVSSKQLMVNIQQQYPDILTTSKSKTFTWVNELI 273
Query: 265 WRDFYQMILYCYPNVVNKS-FKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+FY+ ++ +P + + F ++YD++ W DN A+ F WC+G TGYPL+D+A+ QL
Sbjct: 274 WREFYKHLIAEFPKLSRGANFNEKYDSVAWR-DNEAE--FKLWCEGRTGYPLVDAAMQQL 330
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G+MHNRLRMV ASFL K++ I+W+ GE +F L D DLASNNG WQW+AS+GC +Q
Sbjct: 331 LQTGWMHNRLRMVVASFLTKHLLIDWRKGEQFFMQHLIDGDLASNNGGWQWAASTGCDAQ 390
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
P+FR+FNPI QS++FD G FIRKYLP+L K+ +K+IH P
Sbjct: 391 PYFRVFNPITQSERFDPSGQFIRKYLPELEKVPDKHIHFP 430
>gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
Length = 469
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/460 (30%), Positives = 237/460 (51%), Gaps = 59/460 (12%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIE-------- 134
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 135 --------KVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG 186
V S L +P +++ V S+ L D FC+
Sbjct: 168 KNRPAALWDVPSAFAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRD--FCR------- 218
Query: 187 IKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
+++++Y+ R++P+ GTS LS +L G +S R+ V ++
Sbjct: 219 ----------------ERVQDYHQARDFPAREGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLN 305
++ G WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F
Sbjct: 263 MGELSE--GAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQL 317
Query: 306 WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDL 365
WC+G TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D
Sbjct: 318 WCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDY 377
Query: 366 ASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWK 425
A+NNG WQW AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW
Sbjct: 378 AANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW- 436
Query: 426 ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+Y + + YP +++H ++ L+ Y K
Sbjct: 437 --TYPAVNSVL-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614]
gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614]
Length = 478
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/430 (33%), Positives = 238/430 (55%), Gaps = 24/430 (5%)
Query: 42 LQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFF 101
LQ L++ A I ++ + ++AV N YEP AI RD +K LK G +
Sbjct: 61 LQQDLPGLVLLKGDARHLIPEVAKRAGVEAVFWNRCYEPYAIERDTDLKSSLKDDGYEVK 120
Query: 102 SYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKL 161
S+K +++E EI ++G PY ++S + K +++ + P K + + +L
Sbjct: 121 SFKASLLYEPWEIETQSGGPYKVYSPFWKA-ARQIEIDDAL--PAPEKLDIADYDGGEEL 177
Query: 162 HKIINNNIISLNDLGFCKSNLSSLGIK----TGASGAKILLNNFIKK-IKNYNINRNYPS 216
DL K N + G + G +GA L +F+++ +K Y RN P
Sbjct: 178 ESF---------DLLPKKPNWAK-GWEDLWTPGEAGASERLGSFLEEGLKGYGKLRNRPD 227
Query: 217 INGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCY 276
+ S LS HL FG IS R++ + + G +LS++ WR+F +LY +
Sbjct: 228 LPNVSRLSPHLHFGEISPRQIWHATQDVMDRRSSLGDDG-MKFLSEIAWREFSHNLLYHF 286
Query: 277 PNVVNKSFKKEYDNILW-ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRM 335
P + +++++ +D W E D +K W KG TGYP++D+ + +L +GYMHNR+RM
Sbjct: 287 PKLPSENWRSTFDEYPWKEPDGELEK----WQKGQTGYPIVDAGMRELWQTGYMHNRVRM 342
Query: 336 VTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQS 395
+ ASFLIK++ ++W+ GE +F + L D DLA+N+ WQW A SG + P+FR+FNPI Q
Sbjct: 343 IAASFLIKHLRLHWRHGEAWFRDTLVDADLANNSAGWQWVAGSGADAAPYFRVFNPITQG 402
Query: 396 KKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKN 455
+KFD G +IR+++P+L +L +Y+ +P+ A + L+KA I LG YPKP+++H+ +++
Sbjct: 403 EKFDPDGNYIRQWVPELRELDTRYLFAPFDAPAEALKKARITLGDTYPKPLVDHASAREA 462
Query: 456 ILKRYNFIKN 465
L+ Y +K
Sbjct: 463 ALEGYEAVKQ 472
>gi|336322699|ref|YP_004602666.1| deoxyribodipyrimidine photo-lyase [Flexistipes sinusarabici DSM
4947]
gi|336106280|gb|AEI14098.1| Deoxyribodipyrimidine photo-lyase [Flexistipes sinusarabici DSM
4947]
Length = 460
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 158/449 (35%), Positives = 245/449 (54%), Gaps = 39/449 (8%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
+FIFDKNIL ++ D RI FIF + +L +L +L+I Y EI + +
Sbjct: 29 IFIFDKNILGDFKAN----DPRITFIFNKVKKLKNDLIKNGMNLVIFYGCPD-EIFRYLK 83
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
K + V + DY ++I RD+ I + + + D +F +++ G PY +F
Sbjct: 84 KEGYNKVFFSQDYTKRSIERDRQISEIIDTTIVR-----DNFLFHPSDVRKNDGTPYKVF 138
Query: 126 S-FYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNI----ISLNDLGFCKS 180
+ FY+ K + ++ +P + ++ I N+ I IS+ ++GF ++
Sbjct: 139 TPFYR---TAKNQLDESNFIEFPFNYSKIAGFNYDNIYIIENSEIVKKPISIENIGFVEN 195
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ + + L I NY NR YP+++ TS+L HLRFGTISIR+LV+
Sbjct: 196 YVDNFA---ADKSPEYLCERLKNLINNYESNREYPALDETSHLGPHLRFGTISIRELVRF 252
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ K K D T++ QL+WR+F+ +LY +P+ +FK NI WE+D
Sbjct: 253 V-----KTLKEDGFQTETFMKQLLWREFFNSVLYNFPHSEFNNFKNV--NIPWEND---L 302
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
K F +W G TG P++D+A+ QLN +GYMHNRLRMV ASFL K++ I+W+WGE YF KL
Sbjct: 303 KLFEHWKSGTTGVPVVDAAMRQLNKTGYMHNRLRMVVASFLTKDLHIDWRWGEEYFKQKL 362
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D++ + N G+WQW+A +GC +QP+FR+FNP Q++KFD FI+ ++P+L + I
Sbjct: 363 FDYEASYNIGSWQWAAGTGCDAQPYFRVFNPYRQAEKFDKNAEFIKMWVPELQSIKAGRI 422
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEH 449
H S L K + KNY +P+ H
Sbjct: 423 H-----SEDFLFKTHV---KNYTRPVCRH 443
>gi|388457015|ref|ZP_10139310.1| deoxyribodipyrimidine photolyase [Fluoribacter dumoffii Tex-KL]
Length = 469
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/438 (35%), Positives = 242/438 (55%), Gaps = 23/438 (5%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ LS +L +LI+R + I LV KL++ +V N YEP AI RDK I
Sbjct: 50 WLHHSLTSLSESLAQLGLNLILRKGDPFEIISDLVKKLSVSSVYWNRCYEPAAISRDKKI 109
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVK-SNKCYLQSYPV 148
K L G + S ++ E I NK G + +F+ Y K + + YL++ P
Sbjct: 110 KAALLERGIEVQSSNGSLLHEPWTIKNKNGDYFKVFTPYWKHCKQHLNIQPSMYLENRPA 169
Query: 149 K-SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IK 206
+ ++ KL IN + S G +GA+ L+ FI+ +
Sbjct: 170 GIEVQSEVLKDWKLLPAIN-----------WAAQFSEYWT-PGEAGAQQKLHEFIEHHLN 217
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWR 266
+Y NR++P N TS LS HL FG IS +++ I + K + D +LS+L WR
Sbjct: 218 DYKKNRDFPIKNATSRLSPHLHFGEISPWTILRAI-ELAKLNPNCDLSSADHFLSELGWR 276
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
+F +LY +P + ++F+ E+D W +D K+ W G TGYP+ID+ + +L ++
Sbjct: 277 EFSVYLLYHFPKLPYENFRSEFDAFPWHND---KELLARWQNGLTGYPIIDAGMRELWAT 333
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
GYMHNR+RM+ ASFL K + I+W+ G ++F + L D DLA+N+ +WQW A G + P+F
Sbjct: 334 GYMHNRVRMIVASFLTKGLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGADAAPYF 393
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
RIFNP++QS+KFD G +IR ++ +LS L ++YIH+PW+++ + I L +YPKPI
Sbjct: 394 RIFNPVLQSQKFDPDGHYIRHWVSELSHLQSQYIHAPWESA----DSERIYLTTHYPKPI 449
Query: 447 LEHSLSKKNILKRYNFIK 464
+ H ++ LK YN +K
Sbjct: 450 INHHEARTRALKYYNQLK 467
>gi|415836573|ref|ZP_11518924.1| deoxyribodipyrimidine photo-lyase [Escherichia coli RN587/1]
gi|417284189|ref|ZP_12071484.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3003]
gi|425276541|ref|ZP_18667881.1| FAD binding domain of DNA photolyase [Escherichia coli ARS4.2123]
gi|323191055|gb|EFZ76320.1| deoxyribodipyrimidine photo-lyase [Escherichia coli RN587/1]
gi|386242398|gb|EII84133.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3003]
gi|408206683|gb|EKI31461.1| FAD binding domain of DNA photolyase [Escherichia coli ARS4.2123]
Length = 472
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 237/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAELINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDAQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGM 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|448717562|ref|ZP_21702731.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
gi|445785862|gb|EMA36647.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
Length = 470
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/468 (28%), Positives = 239/468 (51%), Gaps = 31/468 (6%)
Query: 3 VYCVFIFDKNILD---PLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE 59
+ +F+ D IL+ P+R + + +++ L + DL++R AS
Sbjct: 29 IVPLFVLDPTILEHASPVR---------VSCLLEALSGLRKQYRERGGDLLVRRGEASDV 79
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
+ + + + +AV N DY A RD+ + L+ G + D+++ E I +G
Sbjct: 80 VPAVASEYDAEAVSWNEDYSGLARERDRAVTATLEDDGIAVETVHDRIVHEPGSITPNSG 139
Query: 120 KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
+ YS+FS++ KKW ++ K P + L +L K + + SL +LGF +
Sbjct: 140 EHYSVFSYFWKKWRDREKPAPV---DPPTDADLADL-----QEKDVTEPLPSLEELGFDE 191
Query: 180 SNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+ S + A A+ + +F I Y+ R+YP+ TS LS+H ++GTI R +
Sbjct: 192 PDASPRTVTQTA--ARDRVASFCGGPIYEYDDRRDYPASGATSRLSVHFKWGTIGPRAVY 249
Query: 239 KLIFKFIKK-HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + + + G + QL +R+FY +L P +V+++F I W D
Sbjct: 250 AATERAMDRAEADAERDGVTAFRRQLAFREFYAHVLAFNPEIVSENFSDAAGEIDWRDD- 308
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
F W G TGYP++D+ + QL G+MHNR+RM+ A+FL K++ I+W+ G ++F
Sbjct: 309 --PDEFAAWTAGETGYPIVDAGMRQLREEGWMHNRVRMLVAAFLTKDLLIDWRKGYDWFR 366
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+L D D A++ G WQW+AS+G +QP+FR+FNP+ Q +++D ++R+Y+P+L S
Sbjct: 367 RRLADHDTANDVGGWQWAASTGMDAQPYFRVFNPVKQGREYDPDAEYVRRYVPELEDASP 426
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH S + E+ + +YP PI++H ++ ++ + ++
Sbjct: 427 DDIHDWTTLSETERER----IAPDYPSPIVDHDERRELAIETFERARD 470
>gi|422021424|ref|ZP_16367936.1| deoxyribodipyrimidine photolyase [Providencia sneebia DSM 19967]
gi|414099282|gb|EKT60925.1| deoxyribodipyrimidine photolyase [Providencia sneebia DSM 19967]
Length = 477
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/444 (33%), Positives = 242/444 (54%), Gaps = 34/444 (7%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQ 81
R+I FI K++I L +L L+ + ++ + + + + IDA+ N YE
Sbjct: 50 RQIAFIHKNLIALRESLAQLGIPLVCQTVPNFSASIQWLSDFAQQQQIDALFFNRQYELN 109
Query: 82 AIIRDK-LIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ LI +E + + D ++ +LN+ G+ Y +++ +++ ++ ++ ++
Sbjct: 110 EYKRDRQLISQENSF---QIHIFDDALLLPPKSVLNQKGEMYQVYTPFRRAFLSQLTASD 166
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS-SLGIKTGASGAKILLN 199
+ P K N I+ N+ F ++ + G S A+ L
Sbjct: 167 FHSLQAPTKR--------------ANAIILEENEPLFEHDDIEIAACFPVGESAARQKLR 212
Query: 200 NFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
F + K +NY I+R+ P+I GTS LS +L G +S R+ + + G F
Sbjct: 213 QFCREKAENYQIDRDIPAIEGTSLLSPYLAIGVLSPRQCLNRLLVENPNVLDFPDSGAFC 272
Query: 259 WLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
WL++LIWR+FY +L +P++ +K F + I W N + + W KG TGYP++D
Sbjct: 273 WLNELIWREFYYHLLVAFPHLCRDKPFIAWTNYIHW---NTSSADLEAWKKGLTGYPIVD 329
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+A+ QLN+ G+MHNRLRM+TASFL+K++ I+W+ GE YF +L D LA+NNG WQWSAS
Sbjct: 330 AAMRQLNTLGWMHNRLRMITASFLVKDLLIDWRQGEQYFMQQLIDGTLAANNGGWQWSAS 389
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
+G + P+FRIFNP Q KKFD QG FIR +LP+L + N IH+P + + EK ++
Sbjct: 390 TGIDASPWFRIFNPTTQGKKFDPQGEFIRHWLPELQAVPNDCIHTPHEWA----EKNQVV 445
Query: 438 LGKNYPKPILEHSLSKKNILKRYN 461
L YP PI++H L++ L+ +
Sbjct: 446 LA--YPTPIVDHKLARLRTLEAFE 467
>gi|390449652|ref|ZP_10235256.1| DNA photolyase [Nitratireductor aquibiodomus RA22]
gi|389663847|gb|EIM75362.1| DNA photolyase [Nitratireductor aquibiodomus RA22]
Length = 483
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/470 (29%), Positives = 240/470 (51%), Gaps = 31/470 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGI--IEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ FI D+ S+GI + R ++ S+ L+ +L + L++R ++
Sbjct: 36 IVAAFILDEE------SEGIRPLGGARRWWLHHSLAALAEDLGKHGLKLVLRRGSMARAA 89
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
L + V N Y+P I D +K L+ G + S+ ++ E + +G
Sbjct: 90 LALADETRACTVYWNRRYDPAGIAADTDLKAGLRDRGIEAQSFAGHLLHEPWRLKTGSGG 149
Query: 121 PYSIFSFYQKKWIEKV----KSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
PY +F+ + + ++ V +++ + +S + + KL + L +
Sbjct: 150 PYRVFTPFWRALLDSVHPRPPADRPETLTPSRESVAGDRLEDWKLLPTKPDWATGLRET- 208
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKI-KNYNINRNYPSINGTSYLSIHLRFGTISIR 235
+ G +GA+ L F+ + Y R+ + GTS +S HL G I+
Sbjct: 209 ----------WEPGEAGARKRLTAFLDGAGEGYKTRRDLMAEAGTSGISPHLAHGEITPF 258
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ I++ ++ + ++ WR+F +L+ P + ++F + +D W
Sbjct: 259 Q----IWQTLESDSSIADGDLQAFRREIGWREFCWHLLFHNPKLATENFNRNFDAFPWRG 314
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
D+ A ++ W +G TGYP++D+A+ QL +G+MHNR RMV ASFL+K++GI+W+ GE +
Sbjct: 315 DDTALRH---WQRGETGYPVVDAAMRQLWQTGWMHNRARMVVASFLVKHLGIHWREGEAW 371
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F + L D D ASN NWQW A SG + PFFRIFNP++Q +KFD G ++R+Y+P+L L
Sbjct: 372 FWDTLVDADPASNPANWQWVAGSGADAAPFFRIFNPVLQGQKFDPVGDYVRRYVPELDAL 431
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+K++H PWKA KAG+ LG YP+P+++H +++ L Y +KN
Sbjct: 432 PDKHLHQPWKAPEEACGKAGVKLGDTYPRPLVDHRAARERALDAYKSVKN 481
>gi|192291959|ref|YP_001992564.1| deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
TIE-1]
gi|192285708|gb|ACF02089.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
TIE-1]
Length = 483
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 235/468 (50%), Gaps = 26/468 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V CV++ D+ + D +R+ G ++ +S+ L +L+ LI+R A+ + +
Sbjct: 36 VLCVYVLDE-VSDDVRALGGAVR---WWLAQSLRALESDLRALGGALILRRGPAAAVLAE 91
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + AV N + L V G + ++ + E + I +K G+
Sbjct: 92 LAQQHDAAAVHWNEIEIAAHRAVADALADALTVAGIAYHRHRGDTLVEPSAIRSKDGRGM 151
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + ++ V S Q P + L L D +
Sbjct: 152 RVFTPFWRR----VLSLGDPPQPLP---------RPTTLRPAPAPPSDQLGDWQLEPTAP 198
Query: 183 SSLG-----IKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
G G + A+ L++F+ + Y R+YP + TS LS HLRFG IS R+
Sbjct: 199 DWAGGLRQTWTPGEAAAQARLSDFLAGLPGYADGRDYPDRHITSGLSPHLRFGEISPRQ- 257
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
V +F +LS+L WR+F + +L+ +P++ ++ + +D W+SD+
Sbjct: 258 VWYAARFAAAERPAIAPDIDKFLSELGWREFCRHLLFDHPDLATRNLQPAFDAFPWQSDD 317
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
W +G TGYP++D+ + +L SG MHNR+RMV SFL+K++ I+W+ GE +F
Sbjct: 318 AV---LTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGSFLVKHLLIDWRLGEQWFW 374
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+ L D D SN GNWQW A G + P+FR+FNP++QS+KFD G +I++++P+L+ L N
Sbjct: 375 DTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDAGGAYIQRWVPELAGLPN 434
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH PW A+ +L AGI LG NYP PI++H ++ L Y ++
Sbjct: 435 DLIHQPWTATPLELAAAGIELGGNYPGPIVDHKTGRQRALSAYAELRQ 482
>gi|359454744|ref|ZP_09244013.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20495]
gi|358048121|dbj|GAA80262.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20495]
Length = 464
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/400 (32%), Positives = 226/400 (56%), Gaps = 25/400 (6%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR+ ++ + + I L ++ + ++E+ ++ V+ N +YE + R
Sbjct: 54 RRVTYLQSQLADYGITLHIIEAP---SFCDCTRELINFCKANDVKHVIANTEYELNEVNR 110
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
DK I E + F Y+ +I + N++ + Y +F+ +++ W+++ + L
Sbjct: 111 DKAILHECDELSITFTLYEGDLIAPAGSVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLTQ 170
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KK 204
+P+ S + I ++ K++ S +++NFI K
Sbjct: 171 WPLTS-----------------DPIEFDESDLLKNDGCSDKWPVDDETLSTVVDNFICDK 213
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ +Y+ R+ PS+ GTS LS +L G +S ++L+ I + T FTW+++L+
Sbjct: 214 LTSYDDQRDIPSVKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELV 273
Query: 265 WRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+FY+ ++ +P + +F ++Y+ ++W ++ +F WC+G TGYPL+D+A++QL
Sbjct: 274 WREFYRHLIAEFPKLSRGDNFNEKYNAVVWRK---SESDFKAWCEGRTGYPLVDAAMLQL 330
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G+MHNRLRMV ASFL K++ I+W+ GE +F L D DLASNNG WQW+AS+GC +Q
Sbjct: 331 KQTGWMHNRLRMVVASFLTKHLLIDWREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQ 390
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
P+FR+FNPI QS++FD G FIRKYLP+L + +K+IH P
Sbjct: 391 PYFRVFNPIRQSERFDPTGKFIRKYLPELENVPDKHIHFP 430
>gi|375135573|ref|YP_004996223.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
protein [Acinetobacter calcoaceticus PHEA-2]
gi|325123018|gb|ADY82541.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
protein [Acinetobacter calcoaceticus PHEA-2]
Length = 480
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/429 (36%), Positives = 241/429 (56%), Gaps = 21/429 (4%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK----KLVIKLNIDAVMINHDYEPQA 82
+I F + + +L L+ + LII+ K+I +L I+LNI+ V N ++
Sbjct: 51 KINFYLRQLQQLKKELEQLNIPLIIQVIPYWKDIADYIGELSIQLNIENVYSNIEFGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK ++ L G + F + D+ IF I N++ +PY +F ++K K+ +
Sbjct: 111 LKRDKTVQDFLNQQGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGL- 169
Query: 143 LQSYPVKSYLNNLVHS-SKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
Q YP+ ++ S SK++ + +I + D K G + A L+ F
Sbjct: 170 PQCYPIPEKQSSYPASFSKINSLTLEDIEAFFDPSVSKEQQGLW--PAGENFALEQLDIF 227
Query: 202 IKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
IK + +Y + R++P++ GTS LS +L G +SIR+ ++ +F+ ++ G TWL
Sbjct: 228 IKDHLSDYKLERDFPNVRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWL 287
Query: 261 SQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
+L+WR+FYQ IL+ +P+V FKK I W ++ ++ W G TG P+ID+
Sbjct: 288 DELLWREFYQHILFDFPHVSKHIPFKKNTQKIKW---SHNPEHLTAWQTGQTGIPIIDAG 344
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNR+RM+TA FL KNM I+W+ GE +F L D DLA+NNG WQW AS+G
Sbjct: 345 MRQLLKTGWMHNRVRMITAMFLCKNMLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTG 404
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FRIFNPI QSKKFD G +IR+++ +L+ L NK IH P+ K I L
Sbjct: 405 TDAVPYFRIFNPIAQSKKFDPNGDYIRQWVQELAHLDNKAIHEPYST------KTNIQL- 457
Query: 440 KNYPKPILE 448
NYPKPI++
Sbjct: 458 -NYPKPIVD 465
>gi|432769548|ref|ZP_20003902.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE50]
gi|431317892|gb|ELG05662.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE50]
Length = 472
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 237/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAELINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD ++K L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDAQVEKTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +K+G+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----DKSGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
Length = 477
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/466 (31%), Positives = 241/466 (51%), Gaps = 23/466 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V V++ D ++ P +S + R+ F+ +S+IEL + S L+I + +
Sbjct: 32 VTGVYVLDPALIQPPQSLPPMAPARLWFLLESLIELQQRWRAAGSRLLILEGDPVQVLPP 91
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L +AV+ N D EP + RD+ + K L+ G K DQ++ + G PY
Sbjct: 92 LAERLGAEAVVWNRDVEPYSRERDRQVAKRLQADGRKVVVDWDQLLIPPELLKTGAGDPY 151
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
++ + + W KV++ + P S L +L S L + L+ GF + +
Sbjct: 152 RVYGPFLRNWRGKVQAQQPITIEAP--SGLVDL--HSDLVPDRDPLAALLHRHGFQGTEI 207
Query: 183 SSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ G S A L F + Y +RN+PS+ GTSYLS L GT+S R+
Sbjct: 208 CP--CRPGESAALEQLTLFADGPLSGYEPDRNFPSVVGTSYLSAALSVGTLSPRQ-AWCA 264
Query: 242 FKFIKKHYKTD--CIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ + H ++D W +L WR+FYQ L+ +P + + +++++ WE++
Sbjct: 265 AQQGRDHARSDEQRTAIAVWEQELGWREFYQQALFHFPELADGPYREQWRRFPWENN--- 321
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ F +W +G TG P+ID+A+ QLN SG+MHNR RM+ ASFL+K++ +W+WGE F
Sbjct: 322 EAWFSSWREGMTGMPIIDAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWGERAFMEL 381
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
D DLA+NNG WQWSASSG +P RIFNP Q+ KFD G +IR+++P+L ++ K
Sbjct: 382 EVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQATKFDADGEYIRRWVPELRHVNTKD 440
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ + + G + + YP+P++ H + Y I++
Sbjct: 441 LLT---------GEIGGLERRGYPEPLITHKTQQALFKTLYATIRS 477
>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 477
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/440 (32%), Positives = 238/440 (54%), Gaps = 17/440 (3%)
Query: 25 DRRIEFIFKSIIELSINLQNY--DSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
D + +S + ++N N D L + I KLV K+ V N YEP
Sbjct: 44 DHKTGAAGRSWLHHALNALNMSLDGKLCVMRGDPVDIIPKLVAKVGASGVFWNRCYEPWR 103
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
I RDK++K L + S+ +++E +L G PY +F+ + ++ +
Sbjct: 104 IARDKMLKTNLTNNNIQVESFNGSLLWEPWTVLKGDGTPYRVFTPFYRRGCLNAAPPRLP 163
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L + + S + + N++ +D G + ++S + G + A L++F+
Sbjct: 164 LARPDAMQLVADPESSMSIDAL---NLLPDHDWG---AKMAS-HWQIGEAAAMTRLHDFV 216
Query: 203 KK-IKNYNINRNYPSINGTSYLSIHLRFGTISIR-KLVKLIFKFIKKHYKTDCIGYFTWL 260
+ + Y RN+P+ TS LS HL +G IS I K + + D I F L
Sbjct: 217 EGGLNGYKDGRNFPARPHTSRLSAHLHWGEISPNMAWYAAIEKRDQAGFDND-IDVF--L 273
Query: 261 SQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
S+L WR+F +LY +P++ ++ + ++D+ W+SD+ A + W +G TGYP+ID+ +
Sbjct: 274 SELGWREFSHSLLYHFPHLPRQNLQPKFDSFPWQSDDNALRA---WQQGKTGYPIIDAGM 330
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
+L +GYMHNR+RM+ SFL+KN+ ++W GE +F + L D DLA+N+ WQW A G
Sbjct: 331 RELWETGYMHNRVRMIVGSFLVKNLLLHWHHGEAWFWDCLVDADLANNSAGWQWIAGCGA 390
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
+ P+FR+FNPI Q KFD G + R+++P+L+ L NKY+ SPW+A + +L+ AGI LGK
Sbjct: 391 DAAPYFRVFNPITQGTKFDADGSYTRRFVPELATLPNKYLFSPWEAPALELQAAGITLGK 450
Query: 441 NYPKPILEHSLSKKNILKRY 460
+YP PI++ S++ L +
Sbjct: 451 DYPNPIVDVKRSREAALAAF 470
>gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
Length = 471
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/422 (33%), Positives = 231/422 (54%), Gaps = 26/422 (6%)
Query: 49 LIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVI 108
L+IR + I L+ + V N YEP + D +K +L+ G S+ ++
Sbjct: 70 LLIRRGDPAVIINSLIQETGAAGVFWNRCYEPWRVEHDAQLKTDLEENGITAKSFNGSLL 129
Query: 109 FEKNEILNKTGKPYSIFS-FYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINN 167
+E ++ G PY +F+ FY+K ++ + K PV L ++H +
Sbjct: 130 WEPWQVGKPDGSPYKVFTPFYRKGCLQAEEPRK----PLPVPDQL-------RIHPLNTE 178
Query: 168 NIISLNDLGFCKSNLSSLGIKT----GASGAKILLNNFIKK-IKNYNINRNYPSINGTSY 222
+S+++L + S + + G A+ L F + + +Y RN+P++ TS
Sbjct: 179 GALSIDELNLLEDRPWSAQVSSHWEHGEKAAQNRLYAFFEDGLSDYKDGRNFPALTHTSR 238
Query: 223 LSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNK 282
LS HL FG IS + I+ + H +T I +F S+L WR+F +L+ P++
Sbjct: 239 LSPHLHFGEISPNQ----IWWVLGSHEETRDIDHFR--SELGWREFSYSLLFNNPSLPKS 292
Query: 283 SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLI 342
+ +++DN W SD+ + L W KG TG P++D+ + +L +GYMHNRLRM+ SFL+
Sbjct: 293 NLNEKFDNFPWLSDD---QRLLAWQKGQTGVPIVDAGMRELWQTGYMHNRLRMIVGSFLV 349
Query: 343 KNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQG 402
KN+ ++W+ GE +F + L D DLA+N+ +WQW A G + P+FRIFNPI+Q +KFD G
Sbjct: 350 KNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGEKFDAHG 409
Query: 403 IFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNF 462
+ R++LP+L L +KY+ PW+A L+ AG+ LG+NYP PI++ S+ L+ +
Sbjct: 410 DYTRRFLPELKDLPDKYLFKPWEAPKDVLKGAGVTLGENYPLPIVDLKKSRDEALRAFEE 469
Query: 463 IK 464
IK
Sbjct: 470 IK 471
>gi|392554726|ref|ZP_10301863.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas undina NCIMB
2128]
Length = 464
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/400 (33%), Positives = 221/400 (55%), Gaps = 25/400 (6%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR+ +I + + + +NL D+ +A ++ + +I ++ N +YE R
Sbjct: 54 RRVSYIREKLAKYGVNLHVIDAPF---FADCQTKLLDFCQQHDIKHIIANTEYELNEFNR 110
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
DK I+ + F Y+ +I + + + Y +F+ +++ W+++ + L
Sbjct: 111 DKAIQAQCDQQQITFTLYEGDIIAPVGSVRTQNNEMYKVFTPFKRAWLKQYQDTHFSLLQ 170
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KK 204
+P I+ I + + SS+ +++NFI K
Sbjct: 171 WP-----------------ISEEPIEIEQCELLSGDESSIKWPVDDDTLSTVVDNFIHDK 213
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ +Y+ R+ PS+ GTS LS +L G +S ++L+ I + T FTW+++LI
Sbjct: 214 LASYDDVRDIPSVKGTSGLSPYLALGVVSSKQLMVNIQQHYPDILTTSKSKTFTWVNELI 273
Query: 265 WRDFYQMILYCYPNVVNKS-FKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+FY+ ++ +P + + F ++YD++ W + F WC+G TGYPL+D+A+ QL
Sbjct: 274 WREFYKHLIAEFPKLSRGANFNEKYDSVSWRDSD---AEFKQWCEGRTGYPLVDAAMQQL 330
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G+MHNRLRMV ASFL K++ I+W+ GE +F L D DLASNNG WQW+AS+GC +Q
Sbjct: 331 LQTGWMHNRLRMVVASFLTKHLLIDWRKGEQFFMQHLIDGDLASNNGGWQWAASTGCDAQ 390
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
P+FR+FNPI QS++FD G FIRKYLP+L K+ +K+IH P
Sbjct: 391 PYFRVFNPITQSERFDPNGDFIRKYLPELQKVPDKHIHFP 430
>gi|417549253|ref|ZP_12200333.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-18]
gi|417563726|ref|ZP_12214600.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC143]
gi|395555482|gb|EJG21483.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC143]
gi|400387221|gb|EJP50294.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-18]
Length = 480
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 161/451 (35%), Positives = 247/451 (54%), Gaps = 32/451 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I F + + L L L+I+ KEI + K NI+ V N +
Sbjct: 51 KISFYLRQLRTLQKELAAIHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK ++ L G + F + D+ IF I N++ +PY +FS ++K K+ ++
Sbjct: 111 LKRDKTVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGL- 169
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG--FCKSNLSSLGI---KTGASGAKIL 197
Q YPV + N + + I L+++ FC S+LS G A
Sbjct: 170 PQCYPVPNKQNEVPLD-----FLQGENIDLDEIEKLFC-SSLSKEQQDLWPVGEQYALEQ 223
Query: 198 LNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L+ FI++ + +Y + R++P I GTS LS +L G +SIR+ ++ +F+ ++ G
Sbjct: 224 LDQFIEESVCHYKLERDFPHIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQ 283
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TWL +L+WR+FYQ IL+ +P+V FKK+ I W N+ ++ W G TG P+
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDSQKIKW---NHNPEHLTAWQTGQTGIPI 340
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW
Sbjct: 341 VDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWC 400
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNPI QSKKFD +G +IR+++ +L+ L NK IH P+ + +
Sbjct: 401 ASTGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYSSKT------- 453
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
LG NYPKPI++ K+ LK KNI
Sbjct: 454 -DLGLNYPKPIVD---LKETRLKAIETFKNI 480
>gi|299769190|ref|YP_003731216.1| deoxyribodipyrimidine photo-lyase [Acinetobacter oleivorans DR1]
gi|298699278|gb|ADI89843.1| deoxyribodipyrimidine photo-lyase [Acinetobacter oleivorans DR1]
Length = 480
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 153/432 (35%), Positives = 241/432 (55%), Gaps = 27/432 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK----KLVIKLNIDAVMINHDYEPQA 82
+I F + + +L L+ + LII+ K+I +L +L+I+ V N +
Sbjct: 51 KINFYLRQLQQLKKELEKLNIPLIIQVIPYWKDIADYICELTHQLHIENVYSNIEVGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK +++ L G + F + D+ IF I N++ +PY +F ++K K+ +
Sbjct: 111 LKRDKTVQQALNQQGKELFLFHDRTIFPLRSIRNQSQQPYQVFGAFKKACYSKLDISGLP 170
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL-GFCKSNLSSLGI---KTGASGAKILL 198
Q YP+ + S N +SL D+ F S++S TG A L
Sbjct: 171 -QCYPIPEKQKSNPESDS-----NIKSLSLEDIEAFFDSSISKDQQNLWPTGEGFALEQL 224
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
+ FI+ + +Y + R++P++ GTS LS +L G +SIR+ ++ +F+ ++ G
Sbjct: 225 DVFIENHLSDYKLERDFPNVKGTSQLSPYLNLGILSIRQCLQALFRTEHGNFHIANEGQQ 284
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TWL +L+WR+FYQ IL+ +P+V FKK+ I W N+ ++ W G TG P+I
Sbjct: 285 TWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKW---NHNPEHLTAWQTGQTGIPII 341
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+ + QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW A
Sbjct: 342 DAGMRQLQKTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMEHLIDGDLAANNGGWQWCA 401
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI QSKKFD G +IR+++ +L+ L NK IH P+ + +
Sbjct: 402 STGTDAVPYFRIFNPIAQSKKFDPNGDYIRQWVDELADLDNKMIHEPYSSKT-------- 453
Query: 437 ILGKNYPKPILE 448
L NYPKPI++
Sbjct: 454 PLQLNYPKPIVD 465
>gi|387606186|ref|YP_006095042.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
gi|284920486|emb|CBG33548.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
Length = 472
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 242/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ + I + L I L L+ R +A + + IK++ + ++ + N+ Y
Sbjct: 47 MSPRQAKLINAQLNGLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVLCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+ + +F W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHRPFIVWTDRVQWQRN---PAHFKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15]
gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus
CB15]
gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
Length = 483
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/437 (32%), Positives = 244/437 (55%), Gaps = 21/437 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ KS+ L+ +L+ + L++R +A++ + +L+ + +V+ N Y+ + RD I
Sbjct: 65 WLDKSLKSLAASLETLGTKLVLRKGVAAEVLDQLIAQSGARSVVWNRLYDKPSTDRDAAI 124
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K L+ G S+ ++ E + N + +PY +F+ Y W ++ + +L V
Sbjct: 125 KAALRDRGVDCQSFNAGLLNEPWTVKNGSDQPYKVFTPY---W----RAAREHLTDVAVT 177
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS-SLGIKT-GASGAKILLNNFIK-KIK 206
+ +LV ++ + ++ S N L K + S + T G +GA L+ F+K IK
Sbjct: 178 AAPGHLVAPARF--PASESLASWN-LHPTKPDWSKGFDLWTPGEAGAHARLDAFLKGPIK 234
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWR 266
Y R+ P + TS LS HL FG I R+ V L + +LS++ WR
Sbjct: 235 GYGDQRDIPGVEATSKLSPHLHFGEIGPRQ-VWLATRSAADQGDIPLAEADKFLSEIGWR 293
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
+F ILY +P++ + +FK E+D W D A W +G TGYP++D+ + +L ++
Sbjct: 294 EFNHSILYNWPHMPSANFKPEFDGFPWVKDEGA---LEAWKRGQTGYPIVDAGMRELWTT 350
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
G+MHNR+RM+ ASFLIK++ I+W+ GE +F + L D DLA+N GNWQW+A SG + P+F
Sbjct: 351 GFMHNRVRMIVASFLIKHLMIDWREGEAWFWDTLLDADLANNVGNWQWTAGSGADAAPYF 410
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
RIFNPI Q +KFD +G ++R+++P+L +S+ IH PW + A + Y +PI
Sbjct: 411 RIFNPIAQGEKFDPKGDYVRRWVPELRNVSDDVIHKPWTKPLHLPAGAKRL----YSRPI 466
Query: 447 LEHSLSKKNILKRYNFI 463
++H++++ L+ Y+ +
Sbjct: 467 VDHAMARARALEAYHGL 483
>gi|384422583|ref|YP_005631942.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
Length = 469
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 236/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAIQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWDVPSALAELVWHPEQT---------------FDYPRVDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRGFCRERVQDYHQARDFPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|347441468|emb|CCD34389.1| similar to deoxyribodipyrimidine photo-lyase [Botryotinia
fuckeliana]
Length = 607
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 234/447 (52%), Gaps = 24/447 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++FI +++ L +L D L + K ++ +++L N +YE
Sbjct: 163 RVDFILRTLDILKKDLAKLDIPLYVETIDKRKRVESRILELLGEWGCSHFYANMEYEVDE 222
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + + G D + E+ + GK Y++++ + K W+ V N
Sbjct: 223 LRREARMVRACVEKGICMDVIHDTCVVRPGELKSGQGKQYAVYTPWFKSWVAHVHENSDL 282
Query: 143 LQSY--PVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNN 200
L+ + P K+ + +KL + + L + G A L+
Sbjct: 283 LELFDAPEKNPSSARKTFAKLFETEIPDAPKNKSLTSEEKERFRSMWPAGEHAAHERLSK 342
Query: 201 FI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI----- 254
F +KI Y +RN+PS+N TS LS+H GT+S R ++ + H T +
Sbjct: 343 FADEKINKYQDHRNFPSLNSTSSLSVHFASGTLSSRTAIRTA----RDHNNTKKLNAGYQ 398
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
G TW+S++ WRDFY+ +L +P V +NK FK EY NI WE Y + +F W +G TGY
Sbjct: 399 GIQTWISEVAWRDFYKHVLVHWPYVCMNKPFKPEYTNIEWE---YNRAHFQAWTEGRTGY 455
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
P++D+A+ QLN GYMHNR RM+ SFL K++ ++W+ GE YF L D D ASNNG W
Sbjct: 456 PIVDAAMRQLNHCGYMHNRSRMIVGSFLAKHLLLDWRMGERYFMEHLIDGDFASNNGGWG 515
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEK 433
+ AS+G QP+FRIFNP++QS+KFD +G +IRK++ +L + K IH P+ E
Sbjct: 516 FCASTGVDPQPYFRIFNPLLQSEKFDAEGEYIRKWVEELKGVKGKAIHEPYGDK----EA 571
Query: 434 AGIILGKNYPKPILEHSLSKKNILKRY 460
A I YP+ I+EH +S++ LKRY
Sbjct: 572 AKIAKKSGYPERIVEHKVSRERCLKRY 598
>gi|262377211|ref|ZP_06070436.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii
SH145]
gi|262307949|gb|EEY89087.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii
SH145]
Length = 469
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/445 (34%), Positives = 254/445 (57%), Gaps = 35/445 (7%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR++ + + + +L+I L + L + E++ L KL ID + N + + R
Sbjct: 53 RRLDILKQQLAQLNIPLIILNVPL---WQDLPAEMRSLCQKLQIDTLHANIEVGVNELQR 109
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN--KCY- 142
D +++ L+ + Y D+ +F I N++ +PY I+S ++KK E++ N CY
Sbjct: 110 DAQVQQMLEQQQIRVELYHDRSLFPLTSIRNQSNQPYQIYSAFKKKCYERLIQNIPGCYP 169
Query: 143 -LQSY-PVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNN 200
+Q+ PV+ L + + S L K N + + + ++L LL++
Sbjct: 170 DIQAQDPVE--LPDQLTSFDLQKFAANYEVDHAAQLWPAQDHTALE----------LLDD 217
Query: 201 FIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
FI+ KI +Y R P+++GTS LS +L G +SIR+ ++ +FK +++ D IG TW
Sbjct: 218 FIEDKIAHYKTERELPAVDGTSRLSPYLNIGILSIRQCMQTLFK--DSYFQIDDIGQQTW 275
Query: 260 LSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
L +L+WR+FY L+ +P V ++ FK+ DNI W + A N W +G TG P++D+
Sbjct: 276 LDELLWREFYLHTLFDFPRVSRHRPFKENTDNIQWRN---APDNLAAWQQGQTGIPIVDA 332
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
+ Q+ ++G+MHNR+RM+TA FL KN+ I+W+ GE++F L D DLA+NNG WQW AS+
Sbjct: 333 GMRQMRATGWMHNRVRMITAMFLCKNLLIDWRLGESWFMQHLIDGDLAANNGGWQWCAST 392
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G + P+FRIFNP+ QS+KFD G +IR+++P+L+ L+ K IH P+ + L
Sbjct: 393 GMDAVPYFRIFNPVSQSQKFDPNGDYIRQWVPELTHLNAKSIHEPYAKNPD--------L 444
Query: 439 GKNYPKPILEHSLSKKNILKRYNFI 463
+YPKPI++ S+ ++ + I
Sbjct: 445 ALDYPKPIVDLKASRVRAIEAFKQI 469
>gi|257089919|ref|ZP_05584280.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
gi|256998731|gb|EEU85251.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
Length = 477
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/400 (36%), Positives = 219/400 (54%), Gaps = 28/400 (7%)
Query: 71 AVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
A+ N D RD+ + + + FS++D + EI G Y +F+ Y
Sbjct: 92 AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 151
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIK-- 188
KW E K PV S KI + + + + + ++ + +K
Sbjct: 152 KWKEAPKETPI-----PV---------SYTAEKIFSTCLFPEEEAAY-REQIARIPLKHY 196
Query: 189 -TGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G A+ LN FI +K+++Y R++P + TS+LS LR G +SIR + + +
Sbjct: 197 SVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASM-- 254
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNW 306
+ T+ +L WRDFY MI +P ++ ++++ I W +D + F W
Sbjct: 255 ----PSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND---PEMFAKW 307
Query: 307 CKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLA 366
KG TGYP+ID+A+ QLN +G+MHNRLRM+TASFL+KN+ I+W+ GE YF L D+D A
Sbjct: 308 QKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRGGEKYFQKMLIDYDAA 367
Query: 367 SNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKA 426
+N G WQW+AS+G + P+FRIFNPIIQSKKFD G FI+KY+P+L ++ KYIH P
Sbjct: 368 NNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIM 427
Query: 427 SSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ + + LG+NYPKPI++++ SKK L Y K I
Sbjct: 428 NEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEI 467
>gi|417627628|ref|ZP_12277875.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_MHI813]
gi|345377932|gb|EGX09863.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_MHI813]
Length = 472
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 239/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS E+ K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVDVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ F + + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHCPFIAWTERVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ INW+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLINWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRNVPGKSVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|417947770|ref|ZP_12590921.1| deoxyribodipyrimidine photo-lyase [Vibrio splendidus ATCC 33789]
gi|342810808|gb|EGU45879.1| deoxyribodipyrimidine photo-lyase [Vibrio splendidus ATCC 33789]
Length = 471
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 251/445 (56%), Gaps = 39/445 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLI----IRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ +FIF+ + +L L + L+ + +K++ +L +L V N + E
Sbjct: 48 KADFIFRHLKQLEAELADLGITLLHLKATDFDDQAKQLTELYQQLGSQVVFANSEPEVDE 107
Query: 83 IIRDKLIKKE---LKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN 139
RD+ + L++ C V+ +LN+ G+ + +F+ ++ W+++V++
Sbjct: 108 QARDQQLISSGINLQISDCD-------VMLPLGSVLNQQGEMFKVFTPFKNAWLKEVQAK 160
Query: 140 KCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN-----DLGFCKSNLSSLGIKTGASGA 194
+Q P L + ++ +N+ +L D F + + S + G
Sbjct: 161 G--IQCSPAA-----LTSKNNAKALLPDNLQTLQLASDYDFDFPRVDSSRWPLSQDILG- 212
Query: 195 KILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL-VKLIFKFIKKHYKTDC 253
++ N K+ +Y R+ PS+ GTS LS +L G +S R L ++LI + + T
Sbjct: 213 NVIPNFLANKVNDYAHLRDIPSVKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQ- 271
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVVNKS-FKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+ F+WL++LIWRDFY+ +++ +P +V + F+++Y+ + W D+ +F WC+G TG
Sbjct: 272 LPAFSWLNELIWRDFYKHLMFHHPKLVKGANFQQKYNGLDWYQDH---PSFKAWCEGKTG 328
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
YPL+D+A+ QL +G+MHNRLRMV ASFL K++ I+W+WGE +F L D D ++NNG W
Sbjct: 329 YPLVDAAMRQLVETGWMHNRLRMVVASFLTKHLLIDWRWGERFFMEHLIDGDFSANNGGW 388
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QW++S+GC +QP+FRIFNPI QS+KFD +GIFIRKY+P+L + +K++H P Y +
Sbjct: 389 QWASSTGCDAQPYFRIFNPITQSEKFDPKGIFIRKYIPELKNIPDKHVHFP---HDY-IA 444
Query: 433 KAGIILGKNYPKPILEHSLSKKNIL 457
K GI Y +PI+EH ++ L
Sbjct: 445 KNGI--NSEYWQPIVEHKEARLRAL 467
>gi|417139698|ref|ZP_11983120.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0259]
gi|417307171|ref|ZP_12094045.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli PCN033]
gi|338771226|gb|EGP25972.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli PCN033]
gi|386157426|gb|EIH13768.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0259]
Length = 472
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 242/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ + I + L I L L+ R +A + + IK++ + ++ + N+ Y
Sbjct: 47 MSPRQAKLINAQLNGLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVLCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+ + +F W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHRPFIVWTDRVQWQRN---PAHFKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK ++KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKW----VQKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|417822869|ref|ZP_12469467.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|419836871|ref|ZP_14360311.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|421343000|ref|ZP_15793404.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|421355393|ref|ZP_15805724.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|423734313|ref|ZP_17707526.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|424008597|ref|ZP_17751545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
gi|340048999|gb|EGR09915.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|395941567|gb|EJH52244.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|395950063|gb|EJH60682.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|408631158|gb|EKL03717.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|408857421|gb|EKL97109.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|408865383|gb|EKM04786.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
Length = 469
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 236/450 (52%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQSAQQLLSEQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ V S L LV H + F + S +
Sbjct: 168 KNRPAALWNVPSALAELVWHPEQT---------------FDYPRVDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRDFCRERVQDYHQARDFPVREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|424059066|ref|ZP_17796557.1| hypothetical protein W9K_00180 [Acinetobacter baumannii Ab33333]
gi|404669804|gb|EKB37696.1| hypothetical protein W9K_00180 [Acinetobacter baumannii Ab33333]
Length = 480
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/450 (35%), Positives = 245/450 (54%), Gaps = 30/450 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I F + + L L L+I+ KEI + K NI+ V N +
Sbjct: 51 KISFYLRQLRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK ++ L G + F + D+ IF I N++ +PY +FS ++K K+ ++
Sbjct: 111 LKRDKTVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGL- 169
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG--FCK--SNLSSLGIKTGASGAKILL 198
Q YPV + N + + I L+++ FC S G A L
Sbjct: 170 PQCYPVPNKQNEVPLD-----FLQGENIDLDEIEKLFCSFLSKEQQDLWPVGEQYALEQL 224
Query: 199 NNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
+ FI++ + +Y + R++P+I GTS LS +L G +SIR+ ++ +F+ ++ G
Sbjct: 225 DQFIEESVCHYKVERDFPNIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQ 284
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
TWL +L+WR+FYQ IL+ +P+V FKK+ I W N+ ++ W G TG P++
Sbjct: 285 TWLDELLWREFYQHILFDFPHVSKHIPFKKDSQKIKW---NHNPEHLTAWQMGQTGIPIV 341
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+ + QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW A
Sbjct: 342 DAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCA 401
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNPI QSKKFD +G +IR+++ +L+ L NK IH P+ + +
Sbjct: 402 STGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYSSKT-------- 453
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
LG NYPKPI++ K+ LK KNI
Sbjct: 454 DLGLNYPKPIVD---LKETRLKAIETFKNI 480
>gi|333983407|ref|YP_004512617.1| deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
gi|333807448|gb|AEG00118.1| Deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
Length = 453
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/455 (29%), Positives = 228/455 (50%), Gaps = 45/455 (9%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V FIFD ++P Q ++F+ +++ +L + + L + + +
Sbjct: 33 QVLACFIFDPRQIEPHAYQS---QPGLQFMLEALQDLQQQFRTHQWQLGLYQGQPEQLVS 89
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L + +A+ +N DY P RD ++ + G F+S D ++ E L G
Sbjct: 90 RLHREQAFEAIFVNRDYTPFGRRRDADLQTFCRKQGLAFYSCADTLLNEPEHGLKSDGSA 149
Query: 122 YSIFS-FYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
Y +F+ FY + + V + L L N+++IS +
Sbjct: 150 YQVFTAFYNRARLHPV-------------ALPQGLADGQLLDGEQNSDLIS-------RL 189
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
G A + + + ++Y+ R++P++ TS LS +L+FG S+R+
Sbjct: 190 QQDHSNALPGGRQAALQQLDQLTACRDYSQQRDFPALAATSNLSAYLKFGCCSVRETYYA 249
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+ + + + L QL WRDF+ I + +P V +F + YD I+W +D +
Sbjct: 250 VVESLGTEHPL--------LRQLYWRDFFTQIAFHFPRVFGHAFHERYDKIVWRND---R 298
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
+ F W +G TG P++D+ + QLN +G MHNR+RM+ ASFL+K++ I+W+WGE YFA L
Sbjct: 299 EEFQAWTEGRTGVPIVDAGMRQLNQTGAMHNRVRMIVASFLVKDLHIDWRWGERYFARHL 358
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D+D NNGNWQW+AS+GC +QP+FRIFNP +Q KKFD ++I+ ++P+L+ + I
Sbjct: 359 LDYDPCVNNGNWQWAASTGCDAQPYFRIFNPWLQQKKFDPDCVYIKHWVPELNNYTPALI 418
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKN 455
H K L +YP PI+EH L +
Sbjct: 419 HDWLKQP----------LAGDYPPPIVEHGLRSQQ 443
>gi|448448562|ref|ZP_21591293.1| deoxyribodipyrimidine photolyase [Halorubrum litoreum JCM 13561]
gi|445814578|gb|EMA64539.1| deoxyribodipyrimidine photolyase [Halorubrum litoreum JCM 13561]
Length = 518
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/499 (27%), Positives = 237/499 (47%), Gaps = 60/499 (12%)
Query: 6 VFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI 65
VF+ D ++LD D R+ + + L + + SDL++ + +L
Sbjct: 36 VFVLDPDVLD------HASDVRVRRLLDGLAALRDDYRERGSDLLVARGDPESVLPRLAD 89
Query: 66 KLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIF 125
L+ + V+ N DY A RD +++ L + ++ D V+ + + I G PYS++
Sbjct: 90 ALDAERVVWNRDYSGLARERDAAVRRALDAVDVAREAHHDAVLHDPDAIRTNAGDPYSVY 149
Query: 126 SFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIIN------------------- 166
S+Y KKW ++ K + P + +LV + L ++
Sbjct: 150 SYYWKKWTDRAKDDPA-----PAPAG-EDLVDADGLADAVDAVDWGDASDAVADGGDADA 203
Query: 167 --------------NNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNIN 211
++ + DLGF + + + +G G + A+ L+ F+ + + Y
Sbjct: 204 GSVTADAGPNGLAVGDLPTPADLGFAEPD-AEIG-PAGTAAARERLDEFLDEAVFAYEAE 261
Query: 212 RNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI---KKHYKTDCIG--YFTWLSQLIWR 266
R+YP+ TS LS L++G I +R+ + K + D + QL WR
Sbjct: 262 RDYPAEEATSRLSAFLKYGEIGVREAYAATEAAMAEAKSDARPDDAPEQVEEFQQQLAWR 321
Query: 267 DFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSS 326
+FY +L+ P VV ++K + I W D + W +G TGYP++D+ + QL
Sbjct: 322 EFYTQVLFHNPEVVTANYKAYEEGIEWRDD---PEEIAAWKRGETGYPIVDAGMRQLREE 378
Query: 327 GYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFF 386
+MHNR+RM+ ASFL K++ +W+ G ++F L D D A++NG WQW+AS+G +QP+F
Sbjct: 379 AFMHNRVRMIVASFLTKDLLADWRHGYDHFREHLADHDTANDNGGWQWAASTGTDAQPYF 438
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
RIFNP+ Q +++D +I+KY+P+L L IH + S + A YP PI
Sbjct: 439 RIFNPMTQGERYDPDAEYIKKYVPELRGLDADLIHEWHELSPTQRANA----APEYPAPI 494
Query: 447 LEHSLSKKNILKRYNFIKN 465
++HS ++ L Y +
Sbjct: 495 VDHSERREEALAMYKRARG 513
>gi|92112598|ref|YP_572526.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter
salexigens DSM 3043]
gi|91795688|gb|ABE57827.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter
salexigens DSM 3043]
Length = 473
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 223/440 (50%), Gaps = 27/440 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+I+F + + L +L + L+ R Y A + KL + A+ N +Y
Sbjct: 50 KIDFWLRGVAALREHLSGLNIPLLQRRIETYDEAPDALLKLAHQHGATALHFNREYPLNE 109
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD +++ G + D V + E+L G+PYS+F+ + K W +++ ++
Sbjct: 110 RRRDAAVERAFHDAGIAVTGHTDAVAYAPGELLTGKGEPYSVFTPFAKAWHRQLEGHRLA 169
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
L P ++L I + S C + L + G A L F+
Sbjct: 170 LTHAPAPQ--------TRL-AIEADPAPSRELPDACDTPLDASRWPAGQEEAGDRLERFL 220
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
+ + ++Y R++P++ GTS LS +L G +S R+ ++ + H G W +
Sbjct: 221 RFRGRHYRRQRDFPALPGTSELSPYLALGMLSHRQCLQAVMSDNDGHLADGDAGLTAWAN 280
Query: 262 QLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+LIWR+FY I +P++ ++ F+ ++ W D+ F WC+G TGYPL+D+A+
Sbjct: 281 ELIWREFYLHIAASFPDISRHRPFQPHTRDLAWRDDD---AGFRAWCEGRTGYPLVDAAM 337
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL G+MHNRLRMVTA FL K++ I+W+ GE +F L D D ASNNG WQW+AS+G
Sbjct: 338 RQLVQCGWMHNRLRMVTAMFLSKHLLIDWRRGEAFFMRHLVDGDFASNNGGWQWAASTGT 397
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
+ P+FRIFNP Q+++FD +G FI +LP+L+ L+ K P S + G L
Sbjct: 398 DAAPYFRIFNPTTQAERFDPEGRFIAHWLPELAPLAVKSRFFP---SEAQRRDTGYTL-- 452
Query: 441 NYPKPILEHSLSKKNILKRY 460
PI++H +++ L +
Sbjct: 453 ----PIVDHKAARQRALDAF 468
>gi|432849009|ref|ZP_20080379.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
gi|431401751|gb|ELG85085.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
Length = 472
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 243/445 (54%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ + I + L I L L+ R +A + + IK++ + ++ + N+ Y
Sbjct: 47 MSPRQAKLINAQLNGLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVLCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S++ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYYPSLCKHRPFIVWTDRVQWQSNS---AHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|357403751|ref|YP_004915675.1| deoxyribodipyrimidine photo-lyase [Methylomicrobium alcaliphilum
20Z]
gi|351716416|emb|CCE22076.1| deoxyribodipyrimidine photo-lyase [Methylomicrobium alcaliphilum
20Z]
Length = 453
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/467 (31%), Positives = 238/467 (50%), Gaps = 48/467 (10%)
Query: 2 EVYCVFIFDKNILD--PLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE 59
+V FIFD +D P +S+ ++ F+ +S+ +L + + L I K
Sbjct: 32 QVQACFIFDPYQIDEHPYQSRPALQ-----FMLQSLDDLREQFRERGACLTIVRGEPEKI 86
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
+K V+ I+AV +N DY P + RD +++ + + S D ++ E + L G
Sbjct: 87 VKDWVLACGIEAVFVNRDYTPFSRHRDYRLQQVCIELDIAWHSCADVLLNEPEQALKSDG 146
Query: 120 KPYSIFS-FYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
Y +F+ FY + PV L + + L D
Sbjct: 147 SVYKVFTAFYNNA------------RRIPV-----GLPQTLAEGRFCVPPECPLYDYEPL 189
Query: 179 KSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
K+N + ++ G A + + ++ +K Y R+YP++ TS LS HL+FGT+SIR+
Sbjct: 190 KTN-AGPNLRGGRRQALAIFDA-LENLKEYQNRRDYPALASTSLLSAHLKFGTVSIREAF 247
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
++ + + L Q WRDF+ I Y +P V +F ++YD + W +D
Sbjct: 248 YVVQCVLGDGHPL--------LRQFYWRDFFTHIAYHFPEVFGHAFVRKYDALPWRND-- 297
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ F W +G TG+P++D+ + +LN +GYMHNR+RM+TASFL+K++ I+W+WGE YFA
Sbjct: 298 -QAQFYAWAEGRTGFPIVDAGMRELNRTGYMHNRVRMITASFLVKDLHISWRWGERYFAQ 356
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D+D NNGNWQW+AS+GC +QP+FRIFNP +Q +KFD +I +++P+L +
Sbjct: 357 HLVDYDPCVNNGNWQWAASTGCDAQPYFRIFNPWLQQQKFDGDCEYIYRWIPELRPFAPS 416
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH+ W +YPKPI++H L + + + N
Sbjct: 417 IIHT-WDKK---------FAACDYPKPIVDHRLESEKAKEMFRMCTN 453
>gi|428301495|ref|YP_007139801.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
gi|428238039|gb|AFZ03829.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
Length = 476
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/466 (32%), Positives = 240/466 (51%), Gaps = 31/466 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F D NIL+P + R+ ++ + L S L+I ++ I
Sbjct: 31 VIGLFCLDPNILNPDHVAPV----RVTYMIGCLQALQQRYAEVGSQLLIVQGEPTQVIPT 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L L AV N D EP + RD + LK G + + DQ++ +EI +
Sbjct: 87 LATALGAKAVFWNWDVEPYSQKRDHTVIDALKEQGIDYLAPNWDQLLHTPDEIRTGSNST 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNII----SLNDLGF 177
Y+++S + K W K K+ PV + N +S +I N + S DLGF
Sbjct: 147 YTVYSPFWKNWYSKPKAE-------PVATLANVAGLTSAQMEIARKNGVIELPSAKDLGF 199
Query: 178 CKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
L I G + A+ L F + I NY +RN+P+I+GTS LS L+FG I IR
Sbjct: 200 VWDG--DLIIAPGEATAQSRLEEFCYRAINNYQEDRNFPAIDGTSQLSAALKFGVIGIRH 257
Query: 237 LVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + I+ + T+ +L WR+FYQ ++Y +P + + ++ + WE+
Sbjct: 258 VWQATLSAIENSRSDEARDSIRTYQQELAWREFYQHVMYHFPELADGPYRDAFKGFPWET 317
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
++ +++ WC+G TGYP++D+A+ QLN G+MHNR RM+ ASFL K++ ++ + GE Y
Sbjct: 318 ND---QHYQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVASFLTKDLLLDPRLGEKY 374
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F KL D DL++NNG WQWSASSG +P RIFNP Q++KFD G +IR+++P+L +
Sbjct: 375 FMQKLIDGDLSANNGGWQWSASSGMDPKP-IRIFNPASQAQKFDRDGDYIRQWVPELRSV 433
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ + + LE+ + YP I++H + +K +RY
Sbjct: 434 DTGELLT---GNITPLERRAL----GYPSAIVDHKIQQKLFKERYQ 472
>gi|403057695|ref|YP_006645912.1| deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402805021|gb|AFR02659.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 488
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/473 (29%), Positives = 253/473 (53%), Gaps = 38/473 (8%)
Query: 3 VYCVFI-----FDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIAS 57
V VFI ++K+ + P ++ ++E+ + + +++ E I L ++S ++ +
Sbjct: 31 VLAVFIATPAQWEKHDMAPRQAAFLLEN--LTLVQQALAEKGIPLHYHES---ADFSASV 85
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELK-VIGCKFFSYKDQVIFEKNEILN 116
+ + + + N+ YE +RDK +K L + C Y D ++ +L
Sbjct: 86 DWLAQFCAQQQATDLFYNYQYEINERLRDKQVKDRLADSVVCH--GYHDSLLLPPGSVLT 143
Query: 117 KTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
G+ Y +F+ +++ +I+++ + P ++ I NN + L
Sbjct: 144 GNGEMYKVFTPFRQAFIKRLLESDTTCVPAP----------DARGEPI--NNTVELAPFS 191
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
+ + + +G A L F + ++++Y+ R++P++ GTS LS HL G +S R
Sbjct: 192 YQQREVDGDDFPSGERAALQQLRRFCREQVQDYDQQRDFPALPGTSKLSPHLALGIVSPR 251
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWE 294
+ + + + G FTW ++L+WR+FY+ ++ +P + ++ F + W
Sbjct: 252 QCFNRLRAECPEMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPFTAWTQWVKWR 311
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
+ ++ W +G TGYP++D+A+ QLN +G+MHNRLRM+ ASFL+K++ I+W+ GE
Sbjct: 312 E---SPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLVKDLLIDWREGER 368
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF ++L D DLA+NNG WQW+AS+G + P+FRIFNP Q ++FD +G FIR +LP+L+
Sbjct: 369 YFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGRFIRHWLPELAA 428
Query: 415 LSNKYIHSPWK-ASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
+ +K IH P + A Y + NYP PI++H +++N L + KNI
Sbjct: 429 VPDKDIHQPHRWADKYHHQ-------LNYPLPIVDHKTARQNTLAAFEAAKNI 474
>gi|269965348|ref|ZP_06179468.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
gi|269829994|gb|EEZ84223.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
Length = 471
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/401 (34%), Positives = 217/401 (54%), Gaps = 23/401 (5%)
Query: 67 LNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFS 126
L +VM N YE D + + L +F + D+ + +LNK G+ + +F+
Sbjct: 92 LEATSVMANIHYEVNERELDTQVSEALASHDIEFELFHDKCVHAPTTVLNKQGEYFKVFT 151
Query: 127 FYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG 186
+++ W+ + VK + ++ L ++ + S F SS
Sbjct: 152 PFKRAWLTQFHMPTV------VKPHEQAPLNKKVLEQLESARFNS--SFTFSYPRESSED 203
Query: 187 IKTGASGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
+ L F ++ + Y R++P+I+GTS LS +L G +S R+ + ++
Sbjct: 204 WLASTNDILKQLREFARERSDAYQSERDFPAIDGTSQLSPYLAIGALSPRQCIARLYAEN 263
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFL 304
+++ T+ G TWLS++IWR+FYQ +L P +V K F D I W +Y +K F
Sbjct: 264 QQNDLTE--GKATWLSEIIWREFYQHLLVFEPKLVKGKGFIDWEDKIQW---SYDEKAFE 318
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W G TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D
Sbjct: 319 RWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGEAYFMSKLVDGD 378
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
A+NNG WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ + NKYIH PW
Sbjct: 379 FAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDANGEFVRHWVPEIKSVPNKYIHKPW 438
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ L Y KP+++H ++ L+ + K
Sbjct: 439 TWEGFSL--------LEYHKPMVDHKTEREITLQLFKSAKE 471
>gi|114564201|ref|YP_751715.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB
400]
gi|114335494|gb|ABI72876.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina
NCIMB 400]
Length = 477
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/444 (33%), Positives = 231/444 (52%), Gaps = 30/444 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKL----VIKLNIDAVMINHDYEPQA 82
+I+FI + + L+ L L + +A E++ L + + +I AV ++ E
Sbjct: 56 QIDFIQRHVNLLAQALAVLGIHLDVLHAQDFDEVQTLLAAYIAQHDIAAVYAANEPE--- 112
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
I ++ + L G + ++ N G Y +FS + KKW
Sbjct: 113 -INERRRDRALIDSGVPLTLIDQDCVLAAGQVKNLAGDMYKVFSPFAKKWKSIAGQRAIV 171
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI 202
+ P I + + N++ F +SS G AK +L+ F+
Sbjct: 172 PVAVPAP---------------IAAVLATPNEVVFNCYKMSSEQWPAGEGAAKRILDQFL 216
Query: 203 K-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS 261
++ +Y R++P++ GTS LS L G IS R+ V I + D TWL+
Sbjct: 217 ANQVADYQAERDFPALEGTSRLSPFLAIGVISSRQCVAAILARYPQALVEDTCPAKTWLN 276
Query: 262 QLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+LIWR+FY+ +L +P + +N +F + D I+W +N A+ F WC G TGYP+ID+A+
Sbjct: 277 ELIWREFYRHLLVAFPRLSMNHNFNELGDGIVWR-NNLAE--FTAWCDGQTGYPIIDAAM 333
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QLN +G+MHNRLRMV ASFL K++ ++W+WGE YF KL D DLA+NNG WQWSA +GC
Sbjct: 334 RQLNQTGWMHNRLRMVVASFLTKHLLVDWRWGERYFRQKLIDGDLAANNGGWQWSAGTGC 393
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
+QP+FR+FNP+ QS KFD FI++Y+ +LS S IH P + L
Sbjct: 394 DAQPYFRVFNPMTQSSKFDPDASFIKRYVSELSAWSLADIHQPKTINVNDLFAQR--QDD 451
Query: 441 NYPKPILEHSLSKKNILKRYNFIK 464
YP+PI+EH +++ ++ + +K
Sbjct: 452 RYPQPIVEHKMARLRAIEVLSALK 475
>gi|407973400|ref|ZP_11154312.1| blue light photoreceptor cryptochrome [Nitratireductor indicus
C115]
gi|407431241|gb|EKF43913.1| blue light photoreceptor cryptochrome [Nitratireductor indicus
C115]
Length = 489
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/473 (31%), Positives = 241/473 (50%), Gaps = 37/473 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGI--IEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
V FI D+ S+G+ + R ++ S+ L+ L + ++L++R ++
Sbjct: 43 VVAAFILDEE------SEGMRPLGGARRWWLHHSLCALAGRLSDLGAELVLRRGRMAETT 96
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
L + V N YEP AI DK +K L+ G S+ Q++ E I +G
Sbjct: 97 VALARETGAATVFWNRRYEPAAIHADKKMKAALRENGIAAESFTGQLLHEPWRIKTGSGG 156
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIIS--LNDLGFC 178
Y +F+ + + E ++ P + KL + ++ S L+D
Sbjct: 157 FYRVFTPFWRTLSE------GFVPREPADA-------PEKL-SVFKGDVESDRLDDWQLL 202
Query: 179 KSNLSSLG-----IKTGASGAKILLNNFIKKI-KNYNINRNYPSINGTSYLSIHLRFGTI 232
+ G G +GA L F+ K Y R+ + TS LS HL G I
Sbjct: 203 PTRPDWAGGLRKAWTPGETGAHKRLEAFLDGGGKGYETLRDRMASEATSSLSPHLSHGEI 262
Query: 233 SIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNIL 292
+ + I++ ++ T+ +L WR+F +L+ P + K+F ++D
Sbjct: 263 TPYQ----IWQHLEHRNDLTPGDLQTFRKELGWREFCWHLLFHNPQLAAKNFNSDFDAFP 318
Query: 293 WESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWG 352
W D+ A W +G TGYP++D+A+ QL +G+MHNR RM+ ASFL+K++ ++W+ G
Sbjct: 319 WNRDDGA---LQAWQRGRTGYPVVDAAMRQLWQTGWMHNRARMIVASFLVKDLRLDWREG 375
Query: 353 ENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQL 412
E +F + L D D ASN NWQW A SG + P+FRIFNP++Q +KFD G +IR+Y+P+L
Sbjct: 376 EQWFWDTLVDADPASNPANWQWVAGSGADAAPYFRIFNPVLQGEKFDSGGDYIRRYVPEL 435
Query: 413 SKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
L +K IH PWKA L+KAGI LGK YP+P+++H+ ++++ L Y +K+
Sbjct: 436 ENLPSKGIHKPWKAKGEALKKAGITLGKTYPEPMVDHATAREHALSDYKSLKS 488
>gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
Length = 476
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/452 (33%), Positives = 242/452 (53%), Gaps = 28/452 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ +F D NIL+ + + R+ ++ + EL Q S L+I S+ I +
Sbjct: 31 IVGIFCLDPNILN----KDDVAPARVTYLIGCLQELQQQYQQAGSQLLILRGEPSQAIPR 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L AV N D EP A RD+ + L+ G ++ DQ++ +++ ++ Y
Sbjct: 87 LAATLKASAVFWNLDVEPYAKNRDEQVINVLQEKGIARENFWDQLLHAPGQLVTQSKDYY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL---NDLGFCK 179
+F+ + + W K+K + +K + +L IN +I L LG+
Sbjct: 147 KVFTPFWRNW-SKLKKQSPLQKLEGLKG-----LTEEELTLTINAGVIDLPTAKKLGYAW 200
Query: 180 SNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
N L + G + AK L F I Y RN+P+++GTS LS L+FG I IR +
Sbjct: 201 EN--PLLLDPGETAAKKRLEEFCSSAINEYQEQRNFPAVDGTSRLSAALKFGAIGIRTVW 258
Query: 239 KLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
K + + + TW +L WR+FYQ +Y +P + S++K++ + W+++
Sbjct: 259 KATLEVYENSRSDEARKSIETWQQELAWREFYQHCMYFFPELAEGSYRKDFRSFPWQNN- 317
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
+ F WC+G TGYP++D+A+ QLN + +MHNR RM+ ASFL K++ INW+WGE YF
Sbjct: 318 --EDYFQAWCEGKTGYPIVDAAMRQLNETAWMHNRCRMIVASFLTKDLIINWQWGEKYFM 375
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
KL D DL++NNG WQWSASSG +P RIFNP Q++KFD +G +IR++LP+L +
Sbjct: 376 QKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPEGEYIRQWLPELRSVDT 434
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
+++ S K S + + G YP+PI++H
Sbjct: 435 EFLISG-KIPSLERYQCG------YPEPIVDH 459
>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
Length = 481
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/468 (30%), Positives = 248/468 (52%), Gaps = 23/468 (4%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF++D+ + G + ++ S+ L+ +L S LI+R SK I K
Sbjct: 30 VIPVFVWDEALGGDWSLGGASQ----WWLHHSLQSLAADLNGLGSRLILRRGETSKVIAK 85
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + V + Y+P A + +K + G F Y ++FE I G P+
Sbjct: 86 LLEETGAQNVFASRQYQPWAADTENAVKAVTESAGGDFKRYPGTLLFEPENIRTGGGTPF 145
Query: 123 SIFSFYQK---KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK 179
+F+ + + K + L + P + ++ +++ +L N +L
Sbjct: 146 KVFTPFWRAALKQPAPPQPQPVPLLTSPDEWPQSDALNTWQLCPKTPNWATGWEEL---- 201
Query: 180 SNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
G +GA L F+ + +Y R++P+ TS LS +L+FG IS R+ +
Sbjct: 202 -------WSPGEAGASGALRTFLDSHVDSYGNGRDFPAQPNTSRLSPYLKFGEISPRQ-I 253
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ K+ + +LS++ WR+F ++ +P + +K++ +++ W+S
Sbjct: 254 WWTAQNTKQSNPDEGSSIDKFLSEIGWREFCNHLVAQFPAMPDKAWNPKFEYFPWQSH-- 311
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
++N W +G TGYP+ID+ + +L +G+MHNR+RMV ASFL K++ ++W+ GE +F +
Sbjct: 312 -QRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRVRMVVASFLTKHLLMHWRVGEQWFWD 370
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D DLASN +WQW SG + P+FRIFNPI Q +KFD G++ R+++P+L++L +K
Sbjct: 371 CLLDADLASNACSWQWVGGSGADASPYFRIFNPIAQGEKFDKAGMYTRRWVPELAELPDK 430
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
Y++ PW+A L+ AG+ LG YP PI++H ++++ L+ Y +KNI
Sbjct: 431 YLYKPWEAPELTLKAAGVELGTTYPNPIVDHRTARESALEAYATLKNI 478
>gi|152969283|ref|YP_001334392.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|378977711|ref|YP_005225852.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386033856|ref|YP_005953769.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae KCTC 2242]
gi|419976398|ref|ZP_14491796.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419977906|ref|ZP_14493204.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419984657|ref|ZP_14499802.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419993185|ref|ZP_14508131.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419996783|ref|ZP_14511583.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420002848|ref|ZP_14517497.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420006804|ref|ZP_14521300.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420012641|ref|ZP_14526954.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420020251|ref|ZP_14534440.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024165|ref|ZP_14538179.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031154|ref|ZP_14544977.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420036211|ref|ZP_14549872.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041995|ref|ZP_14555490.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420047089|ref|ZP_14560407.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420054119|ref|ZP_14567294.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420058907|ref|ZP_14571917.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064257|ref|ZP_14577067.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420069626|ref|ZP_14582281.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420076255|ref|ZP_14588727.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|421918400|ref|ZP_16347929.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424829653|ref|ZP_18254381.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|428150049|ref|ZP_18997839.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428941400|ref|ZP_19014448.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae VA360]
gi|449060880|ref|ZP_21738418.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae hvKP1]
gi|150954132|gb|ABR76162.1| deoxyribodipyrimidine photolyase (photoreactivation) [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|339760984|gb|AEJ97204.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae KCTC 2242]
gi|364517122|gb|AEW60250.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397340703|gb|EJJ33899.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397353446|gb|EJJ46520.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397353634|gb|EJJ46702.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397359157|gb|EJJ51859.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397364191|gb|EJJ56824.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397370498|gb|EJJ63072.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397381517|gb|EJJ73688.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397385651|gb|EJJ77746.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397388249|gb|EJJ80238.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397399548|gb|EJJ91200.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400894|gb|EJJ92532.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397407030|gb|EJJ98433.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397417554|gb|EJK08719.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397417848|gb|EJK09011.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397423395|gb|EJK14327.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397433866|gb|EJK24509.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397436231|gb|EJK26825.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397442874|gb|EJK33216.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397447360|gb|EJK37554.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|410119262|emb|CCM90554.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414707078|emb|CCN28782.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426300560|gb|EKV62839.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae VA360]
gi|427539940|emb|CCM93977.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|448873509|gb|EMB08596.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae hvKP1]
Length = 480
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 234/440 (53%), Gaps = 32/440 (7%)
Query: 28 IEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDK 87
++ + ++ E I L ++D + + + + + + + N+ YE RD
Sbjct: 59 LQSLHAALAERGIPLWVEEAD---DFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDA 115
Query: 88 LIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYP 147
++ L + C+ F D V+ +L G+ Y +F+ ++ +I +++
Sbjct: 116 AVENTLCDVICQGFD--DSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDG-------- 165
Query: 148 VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIK- 206
L V + K + L +L + ++ L A L F ++
Sbjct: 166 ----LPACVAAPKPRQAPARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAA 221
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKT-DCIGYFTWLSQLIW 265
+Y R++P++ GTS LS L G +S R+ + + + +H D TWL++LIW
Sbjct: 222 DYEGQRDFPAVEGTSRLSPCLAIGVLSPRQC---LHRLLTEHPAALDGGAGATWLNELIW 278
Query: 266 RDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
R+FY+ ++ YP + + F D + W ++ + + W +G TG+P++D+A+ QLN
Sbjct: 279 REFYRHLMVYYPKLCKGRPFTAWTDKVAWRAE---EASLQAWQRGETGFPIVDAAMRQLN 335
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
++G+MHNRLRM+ ASFL K++ ++W+ GE YF ++L D DLA+NNG WQW+AS+G + P
Sbjct: 336 ATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAP 395
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNP Q +KFD QG+FIR++LP+L+K+ K +H PW + +K GI L +Y +
Sbjct: 396 YFRIFNPTTQGEKFDKQGVFIRRWLPELAKVPEKALHQPWAWA----DKQGITL--DYSR 449
Query: 445 PILEHSLSKKNILKRYNFIK 464
PI++H +++ L + +
Sbjct: 450 PIVDHKQARQETLAAWEAAR 469
>gi|91223275|ref|ZP_01258541.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
gi|91192088|gb|EAS78351.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
Length = 471
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 139/401 (34%), Positives = 217/401 (54%), Gaps = 23/401 (5%)
Query: 67 LNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFS 126
L +VM N YE D + + L +F + D+ + +LNK G+ + +F+
Sbjct: 92 LEATSVMANIHYEVNERELDTQVSEALASHDIEFELFHDKCVHAPTTVLNKQGEYFKVFT 151
Query: 127 FYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLG 186
+++ W+ + VK + ++ L ++ + S F SS
Sbjct: 152 PFKRAWLTQFHMPTV------VKPHEQAPLNKKVLEQLESARFNS--SFTFSYPRESSED 203
Query: 187 IKTGASGAKILLNNFIKKIKN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
+ L F ++ + Y R++P+I+GTS LS +L G +S R+ + ++
Sbjct: 204 WLASTNDILKQLREFARERSDAYQSERDFPAIDGTSQLSPYLAIGALSPRQCIARLYAEN 263
Query: 246 KKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFL 304
+++ T+ G TWLS++IWR+FYQ +L P +V K F D I W +Y +K F
Sbjct: 264 QQNDLTE--GKATWLSEIIWREFYQHLLVFEPKLVKGKGFIDWEDKIQW---SYDEKAFE 318
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W G TGYP++D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF +KL D D
Sbjct: 319 RWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGEAYFMSKLVDGD 378
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
A+NNG WQWSAS+GC QP+FRIFNPI Q +KFD G F+R ++P++ + NKYIH PW
Sbjct: 379 FAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDANGEFVRHWVPEIKSVPNKYIHKPW 438
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ L Y KP+++H ++ L+ + K
Sbjct: 439 TWEGFSL--------LEYHKPMVDHKTEREITLQLFKSAKE 471
>gi|330502050|ref|YP_004378919.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
NK-01]
gi|328916336|gb|AEB57167.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
NK-01]
Length = 478
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 243/451 (53%), Gaps = 30/451 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ ELS L + L++R + ++ + + I AV +N +Y
Sbjct: 48 KVDFWLRNLRELSKALAELNVPLLVRQCHDWGDVPVQVADVCQEHTICAVHVNEEYGINE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+RD+ + L + S+ DQ++F+ +L ++G + ++S ++K E++ S
Sbjct: 108 SLRDRRVSAYLSQQAIAWHSHLDQILFKPGSVLTRSGGYFQVYSQFRKVCYERLHSALPA 167
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLS-SLGIKTGASGAKILLNNF 201
L + P ++ + ++II + GF + S L G A L F
Sbjct: 168 LVTQP----------KAQTPMDVKSDIIPDSVKGFATPSESLRLLWPAGEQAALQRLERF 217
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
+++ Y R++P+ GTS LS +L G +S R+ + + + + G TW+
Sbjct: 218 ADEQVAFYKDERDFPAKPGTSQLSAYLAAGILSPRQCLHAALSANRGEFDSGNQGVITWI 277
Query: 261 SQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY+ IL YP V +++F+ E + + W + A + W +G TG P+ID+A
Sbjct: 278 NELLWREFYKHILVGYPRVSRHRAFRPETEAVPWRN---APEELAAWQEGRTGLPIIDAA 334
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRM+ A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+G
Sbjct: 335 MRQLLETGWMHNRLRMIVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTG 394
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FRIFNPI QS+KFD G FIR+++P+L+ L+ + IH P G+
Sbjct: 395 TDAAPYFRIFNPISQSQKFDPDGQFIRQWVPELAGLNKRDIHDP-------SALGGLFAP 447
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
YP+PI++ + S++ L + KN+ R
Sbjct: 448 SGYPRPIVDLARSRERALAAF---KNLSARE 475
>gi|331662061|ref|ZP_08362984.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143]
gi|417585498|ref|ZP_12236275.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_C165-02]
gi|422330964|ref|ZP_16411981.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4_1_47FAA]
gi|432960190|ref|ZP_20150396.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE202]
gi|433061943|ref|ZP_20248901.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE125]
gi|331060483|gb|EGI32447.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143]
gi|345341015|gb|EGW73431.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_C165-02]
gi|373248213|gb|EHP67645.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4_1_47FAA]
gi|431478299|gb|ELH58048.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE202]
gi|431587344|gb|ELI58721.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE125]
Length = 472
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 237/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAELINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDAQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WLS+LIWR+FY+ ++ YP++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +K+G+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----DKSGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|422827893|ref|ZP_16876066.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B093]
gi|371616319|gb|EHO04685.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B093]
Length = 472
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ +Q W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFQNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIKPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S++ + W +G TGYP++
Sbjct: 271 IWLNELIWREFYRHLITYYPSLCKHRPFIVWTDRVQWQSNS---AHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|448602427|ref|ZP_21656483.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445747942|gb|ELZ99396.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 482
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/476 (28%), Positives = 239/476 (50%), Gaps = 35/476 (7%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +F+FD+++LD + R+ ++ ++ EL + SDL++ +
Sbjct: 27 VAPLFVFDRDVLDHAGAP------RVRYLLDALAELREAYRERGSDLLVARGDPRTVVPA 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L+ + + DY A RD ++ L G D + I G Y
Sbjct: 81 VAAALDAERAVWGIDYSGLARERDADVRLALDDAGVAREPVHDAIFHPPGSITTNAGDTY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVH----------SSKLHKIINNNIISL 172
S+++++ KKW ++ K + YP + S I ++ ++
Sbjct: 141 SVYTYFWKKWRDRDKPDP-----YPEPDADDLADAAALETAAECLSDADFDIAVGDLPTI 195
Query: 173 NDLGFCKSNLSSLGIKTGASGAKILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGT 231
+DLGF + + G A+ L+ F I Y +R+YP+ + TS LS L+FGT
Sbjct: 196 SDLGFEEPTAAVQ--SAGTEAARERLSAFCADAIYRYADDRDYPTRDATSRLSTDLKFGT 253
Query: 232 ISIRKLVKLIFKFIKK--HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYD 289
I IR++ + + + + F SQL WR+FY +L +PNVV +++K+ +
Sbjct: 254 IGIREVYAATAAAREGVGGERDESVEEFQ--SQLAWREFYAHVLREHPNVVTENYKEYEN 311
Query: 290 NILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINW 349
+I W D+ + W +G TGYP++D+ + QL YMHNR+RM+ ASFL K++ +W
Sbjct: 312 DIAWRDDS---EELAAWKEGKTGYPIVDAGMRQLREETYMHNRVRMIVASFLTKDLLCDW 368
Query: 350 KWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYL 409
+ G +F L D D A++NG WQW+AS+G +QP+FRIFNP+ Q +++D G +I++Y+
Sbjct: 369 RHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKRYI 428
Query: 410 PQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
P+LS ++ IH + + E+ L +YP+PI++HS ++ + + +
Sbjct: 429 PELSDVTANTIHEWHDLTDLERER----LAPDYPEPIVDHSERRERAISMFEAARG 480
>gi|428208935|ref|YP_007093288.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
gi|428010856|gb|AFY89419.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
Length = 477
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 243/456 (53%), Gaps = 23/456 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D NIL+ + + R+ ++ + +L S L+I + I
Sbjct: 31 VVGVFCLDPNILE----RDDVAPVRVTYMIGCLQQLQQRYAQVGSQLLILQGEPREAIPA 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK-DQVIFEKNEILNKTGKP 121
L L+ AV N D EP + +RD+ + + LK G + DQ++ ++I + +P
Sbjct: 87 LATALSAKAVFWNWDVEPYSQVRDRTVIETLKEKGIQVLEENWDQILHSPDDIFTGSNQP 146
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
Y++F+ + + W K K+ L + K+ I + + DLGF N
Sbjct: 147 YTVFTPFWRNWSSKPKAAPAQALQDVEGLSEQELQTAEKVGAIA---LPTAKDLGFNWEN 203
Query: 182 LSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
L I+ G + A+ L F + I+ Y RN+P+ +GTS LS L+FG I IR++
Sbjct: 204 --GLVIEPGETPARERLEQFCHRAIEEYKEQRNFPAYDGTSQLSAALKFGAIGIRRVWAA 261
Query: 241 IFKFIKKHYKTDC-IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ ++ + W +L WR+FYQ +Y +P + ++++++ N +E++
Sbjct: 262 TVEAMENTRSDEAQTSIRAWQQELAWREFYQHAMYHFPELEQGAYRQQFKNFPYENN--- 318
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
++ F WC+G TGYP++D+A+ Q+N+ G+MHNR RM+ A+FL K++ I+ + GE YF +
Sbjct: 319 EEYFQAWCEGRTGYPIVDAAMRQMNNIGWMHNRCRMIVANFLTKDLLIDPRLGEKYFYQR 378
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D DL++NNG WQWSASSG +P RIFNP Q++KFD G +IR++LP+L +
Sbjct: 379 LIDGDLSANNGGWQWSASSGMDPKP-IRIFNPASQAQKFDPDGEYIREWLPELRSFDTEE 437
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKN 455
+ S + K ++A + +YP PI++H + ++
Sbjct: 438 LLS---GNISKRDRAAV----DYPNPIVDHKIQQRQ 466
>gi|395233419|ref|ZP_10411659.1| deoxyribodipyrimidine photolyase [Enterobacter sp. Ag1]
gi|394732146|gb|EJF31853.1| deoxyribodipyrimidine photolyase [Enterobacter sp. Ag1]
Length = 469
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 239/452 (52%), Gaps = 34/452 (7%)
Query: 20 QGIIEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMIN 75
Q ++ +++EFIF+ + L L +L I+ +A + IK ++ +DA+ N
Sbjct: 44 QHVMAPKQVEFIFEHLRALGHALAGRGIELHIQQAADFAASIDCIKAFCVEQKVDALFYN 103
Query: 76 HDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEK 135
+ YE RD ++K L V + D ++ + + Y +F+ + K +I +
Sbjct: 104 YQYEVNERARDAALEKALNV-DVTVQGFDDSLLLAPGSVTTGNHEMYKVFTPFSKAFIRR 162
Query: 136 VKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAK 195
++ L V + K + N D+ + G A
Sbjct: 163 LQEG------------LPECVPAPKTRGECDFNERFAFDMP--REAFDRELFPVGEPEAI 208
Query: 196 ILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKT-DC 253
+L F ++ +Y R++P+I GTS LS +L G +S R+ + + +K+H K +
Sbjct: 209 GMLRKFCLQPATDYPEQRDFPAIEGTSRLSPYLATGVLSPRQC---LHRLLKEHPKALEG 265
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
TWL++LIWR+FY+ ++ YP + ++ F D + W +N + W +G TG
Sbjct: 266 EAGATWLNELIWREFYRHLMVAYPKLCRHQPFIAWTDKVRWSGNNAWLEA---WQQGKTG 322
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
YP++D+A+ QLN +G+MHNRLRMV ASFL+K++ I+W+ GE YF ++L D DLA+NNG W
Sbjct: 323 YPIVDAAMRQLNQTGWMHNRLRMVVASFLVKDLLIDWRQGERYFMSQLIDGDLAANNGGW 382
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QW+AS+G + P+FRIFNP Q ++FD +G FIR +LP+L + K IHSPW + + +
Sbjct: 383 QWAASTGTDAAPYFRIFNPTTQGERFDAEGNFIRHWLPELKTVPGKQIHSPWDWADKQKQ 442
Query: 433 KAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+YP+PI++H ++ N L Y +
Sbjct: 443 TL------DYPRPIVDHRQARLNTLAAYEAAR 468
>gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340782929|ref|YP_004749536.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340557080|gb|AEK58834.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
Length = 476
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 134/441 (30%), Positives = 238/441 (53%), Gaps = 27/441 (6%)
Query: 33 KSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKE 92
+S+++L L L++R A + ++V DAV N Y+ I D+ +K
Sbjct: 53 ESLLKLQAALAQRGLPLLLRSGTAKAVLPEIVRASGADAVYWNRRYDRDGIAEDQELKSL 112
Query: 93 LKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYL 152
K +G + S+ ++ E E L + G+PY +F+ + K + + + + + P
Sbjct: 113 FKELGVEARSFPGNLLVEPWEHL-REGQPYRVFTPFWKAMLARHRFPQPLAE--PESYRA 169
Query: 153 NNLVHSSKLHKIINNNIISLNDLGFCKSNLS-SLGI----KTGASGAKILLNNFIKK-IK 206
+ +S+ L G+ + S+G+ + G A L +F+ + +
Sbjct: 170 PTAIPASE----------DLARWGWHPHHPDWSIGLARHWEVGEEAAWRRLRDFVDEGLA 219
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH--YKTDCIGYFTWLSQLI 264
+Y RN P S LS +L G IS R++ + + ++ ++ + + L +L
Sbjct: 220 HYAEGRNLPGKPFVSRLSPYLAHGEISPRQIWWHLSRLAEEQGAWRRNVDAF---LRELG 276
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
WR+F +LY +P++ + + E+ W D A + W + TGYP+ID+ + +L
Sbjct: 277 WREFSWHLLYHFPDLPREPLRPEFQRFPWRQDPAALRA---WTRARTGYPIIDAGMRELW 333
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
SG+MHNR+RM+ ASFL+K++ I W+ GE +F + L D DLA+N+ +WQW A G + P
Sbjct: 334 ESGWMHNRVRMIVASFLVKDLRIPWQEGEAWFWDTLVDADLANNSASWQWVAGCGADAAP 393
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FR+FNP++Q++KFD QG ++R++LPQL +L +IH+PW+A + LE+AGI LGK YP+
Sbjct: 394 YFRVFNPVLQAQKFDPQGDYVRRWLPQLQRLPADHIHAPWQAPAVVLEQAGIALGKEYPR 453
Query: 445 PILEHSLSKKNILKRYNFIKN 465
P+++H +++ L + I+
Sbjct: 454 PLVDHHEAREAALAAWEAIRR 474
>gi|154296018|ref|XP_001548442.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10]
Length = 607
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 234/447 (52%), Gaps = 24/447 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL----NIDAVMINHDYEPQA 82
R++FI +++ L +L D L + K ++ +++L N +YE
Sbjct: 163 RVDFILRTLDILKKDLAKLDIPLYVETIDKRKRVESRILELLGEWGCSHFYANMEYEVDE 222
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ R+ + + G D + E+ + GK Y++++ + K W+ V N
Sbjct: 223 LRREARMVRACVEKGICMDVIHDTCVVRPGELKSGQGKQYAVYTPWFKSWVAYVHENSDL 282
Query: 143 LQSY--PVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNN 200
L+ + P K+ + +KL + + L + G A L+
Sbjct: 283 LELFDAPEKNPSSARKTFAKLFETEIPDAPKNKSLTSEEKERFRSMWPAGEHAAHERLSK 342
Query: 201 FI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI----- 254
F +KI Y +RN+PS+N TS LS+H GT+S R ++ + H T +
Sbjct: 343 FADEKINKYQDHRNFPSLNSTSSLSVHFASGTLSSRTAIRTA----RDHNNTKKLNAGYQ 398
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
G TW+S++ WRDFY+ +L +P V +NK FK EY NI WE Y + +F W +G TGY
Sbjct: 399 GIQTWISEVAWRDFYKHVLVHWPYVCMNKPFKPEYTNIEWE---YNRAHFQAWTEGRTGY 455
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
P++D+A+ QLN GYMHNR RM+ SFL K++ ++W+ GE YF L D D ASNNG W
Sbjct: 456 PIVDAAMRQLNHCGYMHNRSRMIVGSFLAKHLLLDWRMGERYFMEHLIDGDFASNNGGWG 515
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEK 433
+ AS+G QP+FRIFNP++QS+KFD +G +IRK++ +L + K IH P+ E
Sbjct: 516 FCASTGVDPQPYFRIFNPLLQSEKFDAEGEYIRKWVEELKGVKGKAIHEPYGDK----EA 571
Query: 434 AGIILGKNYPKPILEHSLSKKNILKRY 460
A I YP+ I+EH +S++ LKRY
Sbjct: 572 AKIAKKSGYPERIVEHKVSRERCLKRY 598
>gi|432371439|ref|ZP_19614495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE11]
gi|430899652|gb|ELC21746.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE11]
Length = 472
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 241/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 MSPRQAEFINAQLNTLQIMLAEKGIPLLFHEVDDFAASVEMVKQVCEENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD L++K L + C+ F VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDALVEKTLHNVVCEGFD--GSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GIPECVAAPK-------VRSSG--SIAPPSSITLN---YPRQSFDTAHFPVEEKTAIAQL 212
Query: 199 NNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y RN+P++ GTS LS L G +S R+ + + ++ +
Sbjct: 213 RQFCQSGAGEYEQQRNFPAVEGTSRLSASLATGVLSPRQCLHRLLA--EQPQALEGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYHPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLN +G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNGTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKLVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI++H ++ L Y +
Sbjct: 444 KL--DYPQPIVDHKEARVRTLAAYEAAR 469
>gi|366158602|ref|ZP_09458464.1| deoxyribodipyrimidine photolyase [Escherichia sp. TW09308]
Length = 472
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 241/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 MSPRQAEFINAQLNTLQIMLAEKGIPLLFHEVDDFAASVEMVKQVCEENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD L++K L + C+ F VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDALVEKTLHNVVCEGFD--GSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GIPECVAAPK-------VRSSG--SIAPPSSITLN---YPRQSFDTAHFPVEEKTAIAQL 212
Query: 199 NNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y RN+P++ GTS LS L G +S R+ + + ++ +
Sbjct: 213 RQFCQSGAGEYEQQRNFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALEGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYHPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLN +G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNGTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKLVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI++H ++ L Y +
Sbjct: 444 RL--DYPQPIVDHKEARVRTLAAYEAAR 469
>gi|345560332|gb|EGX43457.1| hypothetical protein AOL_s00215g193 [Arthrobotrys oligospora ATCC
24927]
Length = 618
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 242/452 (53%), Gaps = 34/452 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
RI+F +++ L +L D L + K + V+ K ++ + N YE
Sbjct: 174 RIDFCLRTLQILKDDLAKLDIPLWVEEVTDRKRTQNHVLDWCEKWDVGELHANMLYEVDE 233
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RD + +E +F + D + E + + GK YS+F+ + K W V NKC
Sbjct: 234 LRRDAKLVREGVKKDIRFTVHHDTCVVEPMVLRSGAGKTYSVFTPFFKSWEPYVYRNKCV 293
Query: 143 LQSYP----------VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGAS 192
+P V+ L + N + + L+ L G
Sbjct: 294 QDLFPPPGKNDPKHTVREAFAELFSQTSFPTPNPNKRLEQKEA----QRLAKL-WPAGEH 348
Query: 193 GAKILLNNFI-KKIKNYNINRNYPS-INGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYK 250
A+ L F+ +++ Y RN P +GTS LS+HL GT+S R+ V+ K K
Sbjct: 349 EARSRLRRFLDERVSKYVDTRNRPDNDSGTSGLSVHLSAGTLSARQAVRACMDHNKG--K 406
Query: 251 TDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKG 309
+ G+ W+ +L +RDFY+ IL P+V +NK++ +EY + WE Y +++F W +G
Sbjct: 407 SLDSGHHGWIRELCFRDFYKQILAANPHVCMNKAYHEEYHKVKWE---YNEEHFQRWVQG 463
Query: 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNN 369
TGYP++D+A+ QL ++ YMHNR RM+ ASFL K++ ++W+ GENYF ++L D D ASNN
Sbjct: 464 KTGYPIVDAAMRQLATNKYMHNRCRMIVASFLCKDLLLDWRKGENYFMSELIDGDFASNN 523
Query: 370 GNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW-KASS 428
WQ+ +SSG +QP+FRIFNP+ QS+KFD G +IR+++P+LSKL K IH P + S
Sbjct: 524 AGWQFCSSSGTDAQPYFRIFNPLTQSEKFDPDGEYIRRWVPELSKLKGKEIHDPASRLSP 583
Query: 429 YKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
+ +K +YPKPI+EH +++ L+RY
Sbjct: 584 AEFKKL------SYPKPIVEHKAARELALERY 609
>gi|269104447|ref|ZP_06157143.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161087|gb|EEZ39584.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 494
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/468 (31%), Positives = 244/468 (52%), Gaps = 70/468 (14%)
Query: 26 RRIEFIFKSIIELSINL-----QNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEP 80
RR+ + + + ELSI L +++DS + ++I+++ + NI +V N+ Y
Sbjct: 67 RRLAVLTEQLAELSIPLIVLETEDFDSTV--------EKIEEICLMFNIASVHCNNQYLV 118
Query: 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNK 140
RD+ + LK Y D +LNK G+P+ +F+ Y K W+++ K
Sbjct: 119 NEEHRDQKLAANLKRYQISLVQYDDDCALAPGSVLNKQGEPFKVFTPYSKAWLKQYKQ-- 176
Query: 141 CYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS---------NLSSLGIKTGA 191
Q+ + + N HK ++ I L L C + +SSL T
Sbjct: 177 ---QTVEPTAMVGNT------HKELSQEIEEL--LAVCGTVQHYDFQYPQVSSL---TWP 222
Query: 192 SGAKILLNNF----IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
+++L + K+ Y+ R+YPS+ GTS LS +L G +S+R+ +K + +
Sbjct: 223 VDDEVILQHLYSFCCDKVGVYHQQRDYPSLEGTSTLSPYLAIGALSVRQCLKAV-----Q 277
Query: 248 HYKTDCI------GYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAK 300
C+ G F W+++LIWR+FY ++ Y ++ + F+ + W D++
Sbjct: 278 QVDPSCLEINKECGGFVWVNELIWREFYHHLMAEYKHLCKGQPFQAYTQYVTWNEDSHYL 337
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
K W +G TG+P++D+A+ QL +G+MHNRLRM+TASFL K++ ++W GE +F L
Sbjct: 338 KA---WQQGKTGFPIVDAAMRQLQQTGWMHNRLRMITASFLTKDLLLHWHHGERWFLQHL 394
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
D D ASNNG WQW+AS+G +QP+FR+FNP Q ++FD +G FIRK++P+L + NKYI
Sbjct: 395 IDGDFASNNGGWQWAASTGTDAQPYFRVFNPTTQGERFDPEGEFIRKWIPELVDVPNKYI 454
Query: 421 HSP--WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
H+P W K YP PI++H ++ ++ + K I
Sbjct: 455 HTPHLWHGDK-----------KGYPAPIIDHKQARLRAIEVFKNAKEI 491
>gi|110640918|ref|YP_668646.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
gi|191174072|ref|ZP_03035588.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
gi|300996480|ref|ZP_07181454.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
gi|422378314|ref|ZP_16458537.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1]
gi|432470086|ref|ZP_19712139.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE206]
gi|432712376|ref|ZP_19947426.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE8]
gi|433076876|ref|ZP_20263440.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE131]
gi|110342510|gb|ABG68747.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
gi|190905680|gb|EDV65303.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
gi|300304534|gb|EFJ59054.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
gi|324010431|gb|EGB79650.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1]
gi|431000153|gb|ELD16227.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE206]
gi|431259327|gb|ELF51701.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE8]
gi|431600596|gb|ELI70264.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE131]
Length = 472
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAELINTQLNALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD ++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQAERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ +
Sbjct: 213 RQFCLNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQVLEGGPGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EK G+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWKWA----EKTGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|317968588|ref|ZP_07969978.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
Length = 479
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 228/454 (50%), Gaps = 30/454 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+ D IL S + R+ F+ +S+ EL + + S L++ ++ + +
Sbjct: 32 VTGVFVLDPAIL----SAADMAPARVWFLLESLKELQASWRKAGSQLLLLQGDPAEVLPQ 87
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + V N D EP RD+ + L+ G K DQ++ + G PY
Sbjct: 88 LAKAIGAGVVAWNRDVEPYGRERDRRVAAALQAQGQKVLVDWDQLLVAPEALKTGGGDPY 147
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG--FCKS 180
++ +++ W +V+ + P + L + +L + + SL LG F +
Sbjct: 148 RVYGPFKRNWFGQVERRAEAGELAPRSAPQGLLAYDGELPVLAE--LPSLESLGKTFLGA 205
Query: 181 NLSSLGIKTGASGAKILLNNFIK--KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL- 237
L + G + AK L F + +Y RN P GTS LS L+FGT+S R+
Sbjct: 206 ELCP--CRPGEAAAKQQLEAFCDGGPLLSYEPGRNMPGEAGTSGLSAALKFGTLSPRQAW 263
Query: 238 --VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
+ + + + I W +L WR+FYQ L+ +P + + ++ ++ WE+
Sbjct: 264 DAAQQAKALARSDEQRESIQ--VWEQELAWREFYQQALFHFPELADGPYRPQWKLFPWEN 321
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
D + WC G TG P+ID+A+ QLN SG+MHNR RM+ AS+L+K++ +W+ GE
Sbjct: 322 D---PDRYQAWCDGLTGMPIIDAAMRQLNESGWMHNRCRMIVASYLVKDLICDWRLGETA 378
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
F +L D DLA+NNG WQWSASSG +P RIFNP Q+ KFD +G +IR++LP+LS +
Sbjct: 379 FMARLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQASKFDPEGDYIRRWLPELSHV 437
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
+ K + S +E+ G YP PI+ H
Sbjct: 438 NTKDLLS---GEITPMERRG------YPAPIVSH 462
>gi|419130441|ref|ZP_13675290.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5D]
gi|377979987|gb|EHV43256.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5D]
Length = 399
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 226/412 (54%), Gaps = 28/412 (6%)
Query: 56 ASKEIKKLVIKLN-IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEI 114
AS EI K V N + + N+ YE RD +++ L+ + C+ F D VI +
Sbjct: 10 ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNVVCEGFD--DSVILPPGAV 67
Query: 115 LNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLND 174
+ + Y +F+ ++ W+++++ + P V SS I I+LN
Sbjct: 68 MTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPK-------VRSSG--SIKPAPSITLN- 117
Query: 175 LGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTIS 233
+ + + + A L F + Y R++P++ GTS LS L G +S
Sbjct: 118 --YPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLS 175
Query: 234 IRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNIL 292
R+ + + ++ D WL++LIWR+FY+ ++ YP++ F D +
Sbjct: 176 PRQCLHRLL--AEQPQALDGGAGSVWLNELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQ 233
Query: 293 WESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWG 352
W+S+ + W +G TGYP++D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ G
Sbjct: 234 WQSN---PAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREG 290
Query: 353 ENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQL 412
E YF ++L D DLA+NNG WQW+AS+G + P+FRIFNP Q +KFD +G FIR++LP+L
Sbjct: 291 ERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPEL 350
Query: 413 SKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ K +H PWK + EKAG+ L +YP+PI+EH ++ L Y +
Sbjct: 351 RNVPGKSVHEPWKWA----EKAGVKL--DYPQPIVEHKEARVQTLAAYEAAR 396
>gi|422412010|ref|ZP_16488969.1| deoxyribodipyrimidine photo-lyase, partial [Listeria innocua FSL
S4-378]
gi|313620250|gb|EFR91701.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378]
Length = 302
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 123/281 (43%), Positives = 182/281 (64%), Gaps = 10/281 (3%)
Query: 186 GIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKF 244
+G A L NF+K+ + +Y+ R+ P+++ TS+LS +LR G ISIR +++
Sbjct: 25 AFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLSRYLRTGEISIR----TVWQA 80
Query: 245 IKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFL 304
++K T+ G T+ +L WRDFY MI +P N+ ++ Y I WE++ ++ F
Sbjct: 81 LQKEEATE--GRATFEKELCWRDFYNMIYVSFPKQKNEPIQENYRFIEWENN---REFFK 135
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
W G TG+PL+D+A+ QL +G+MHNRLRM+TASFL K++ I+W++GE YF L D+D
Sbjct: 136 KWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYD 195
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
ASN G WQW+AS+G + P+FRIFNP QS+KFD G FIRKY+ +L L +K+IH P
Sbjct: 196 PASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELRDLPDKFIHQPE 255
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
K S + ++ G+ILGK+YP PI++H +K + RY F K
Sbjct: 256 KMSETEQKEHGLILGKDYPLPIIDHKERRKLAIARYEFSKE 296
>gi|417288371|ref|ZP_12075656.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW07793]
gi|386247163|gb|EII93336.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW07793]
Length = 472
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + I + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLRIALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD ++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQAERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ +
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLL--AEQPQVLEGGPGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EK G+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWKWA----EKTGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|170733532|ref|YP_001765479.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
gi|169816774|gb|ACA91357.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
Length = 519
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 132/421 (31%), Positives = 217/421 (51%), Gaps = 6/421 (1%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L L + L++ A +EI+++V AV N Y Q D +
Sbjct: 86 WLHGSLAGLDAALARHGGRLLLLRGDAQREIERVVGDTGAAAVYWNRRYAQQQRDADAAL 145
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
K LK G S ++ E E+L +G PY +F+ Y + + ++ L + P +
Sbjct: 146 KASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRA-ARRDRTVAAPLPA-PER 203
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNY 208
+ + + + + + L +GA L+ F+ + Y
Sbjct: 204 IAFHPWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDRFLTTSLAGY 263
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDF 268
R+ P TS LS LRFG +S R++ + +LS+L WR+F
Sbjct: 264 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAAYAAHADKFLSELGWREF 323
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGY 328
+LY +P + +F+ ++D + W D A + W +G TGYPL+D+ + +L ++G+
Sbjct: 324 SYTLLYHFPALATDNFRAQFDAMPWRDDPAALRA---WQRGRTGYPLVDAGLRELWTTGW 380
Query: 329 MHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRI 388
MHNR+RMV ASFLIK++ I+W+ GE +F + L D D A+N +WQW A G + P+FRI
Sbjct: 381 MHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRI 440
Query: 389 FNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
FNP+ Q +KFD G ++R+++P+L+ L + IH+PW+AS LE AG+ LG +YP P++E
Sbjct: 441 FNPVAQGQKFDPGGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGVDYPAPLVE 500
Query: 449 H 449
H
Sbjct: 501 H 501
>gi|398826896|ref|ZP_10585124.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
gi|398219708|gb|EJN06173.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
Length = 508
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/439 (29%), Positives = 229/439 (52%), Gaps = 19/439 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ +S+ L + LI+R A++ + ++V + AV N + ++ +
Sbjct: 83 WLAQSLRTLGAEIAARGGSLILRKGPAARVVAEVVRESGASAVYWNGIAQAPHQAVERQL 142
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
+ L +G S+ ++ + I NK G+ +F+ + ++ + K ++
Sbjct: 143 EAALAKLGVDSQSFLGDLLVPPSAIRNKEGRGLRVFTPFWRRVLALGDPPKPLPAPKQLR 202
Query: 150 SYLN---NLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKI- 205
+ N + + S L + L + G + A+ L +F+K I
Sbjct: 203 AGPNIASDTLESWALEPTTPDWAGGLRE-----------SWTPGEASARARLRDFLKTIA 251
Query: 206 KNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIW 265
++Y +R+ P GTS LS HLRFG +S R++ +F G +LS+L W
Sbjct: 252 RSYVGDRDRPDREGTSRLSPHLRFGELSPRQVFHAA-RFAAAENPALGPGIEKFLSELGW 310
Query: 266 RDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNS 325
R+F + +L+ +P + ++ + +D W+ D K W +G TGYP++D+ + +L
Sbjct: 311 REFCRHLLHDHPGLATENLQANFDGFPWKGDT---KALTAWQRGATGYPIVDAGLRELWH 367
Query: 326 SGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPF 385
+G MHNR+RMV ASFL+K++ I+W+ GE +F + L D D SN NWQW A G + P+
Sbjct: 368 TGVMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNPANWQWVAGCGADAAPY 427
Query: 386 FRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKP 445
FR+FNPI+Q +KFD G ++R+++P+L L K IH PW+A+ +L AG+ LGK YP+P
Sbjct: 428 FRVFNPILQGEKFDPDGTYVRRWVPELKDLPAKLIHQPWQATPIELASAGVTLGKTYPQP 487
Query: 446 ILEHSLSKKNILKRYNFIK 464
I++H+ ++ L Y I+
Sbjct: 488 IIDHAKGRERALAAYAKIR 506
>gi|26246677|ref|NP_752717.1| deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
gi|227884323|ref|ZP_04002128.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
gi|300989880|ref|ZP_07179009.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
gi|301046034|ref|ZP_07193214.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
gi|386628250|ref|YP_006147970.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i2']
gi|386633170|ref|YP_006152889.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i14']
gi|386638069|ref|YP_006104867.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972]
gi|422365262|ref|ZP_16445764.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1]
gi|432435293|ref|ZP_19677694.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE188]
gi|432455579|ref|ZP_19697780.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE201]
gi|432494518|ref|ZP_19736336.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE214]
gi|432503357|ref|ZP_19745094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE220]
gi|432522802|ref|ZP_19759941.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE230]
gi|432567488|ref|ZP_19804015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE53]
gi|432591767|ref|ZP_19828096.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE60]
gi|432606534|ref|ZP_19842729.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE67]
gi|432650177|ref|ZP_19885939.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE87]
gi|432782556|ref|ZP_20016742.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE63]
gi|432977374|ref|ZP_20166199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE209]
gi|432994445|ref|ZP_20183061.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE218]
gi|432998863|ref|ZP_20187403.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE223]
gi|433057009|ref|ZP_20244093.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE124]
gi|433086323|ref|ZP_20272720.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE137]
gi|433114600|ref|ZP_20300416.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE153]
gi|433124259|ref|ZP_20309848.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE160]
gi|433138278|ref|ZP_20323565.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE167]
gi|433148106|ref|ZP_20333172.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE174]
gi|433211578|ref|ZP_20395193.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE99]
gi|442606929|ref|ZP_21021724.1| Deoxyribodipyrimidine photolyase [Escherichia coli Nissle 1917]
gi|26107076|gb|AAN79260.1|AE016757_164 Deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
gi|227838409|gb|EEJ48875.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
gi|300301951|gb|EFJ58336.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
gi|300407283|gb|EFJ90821.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
gi|307552561|gb|ADN45336.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972]
gi|315292023|gb|EFU51375.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1]
gi|355419149|gb|AER83346.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i2']
gi|355424069|gb|AER88265.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i14']
gi|430966872|gb|ELC84235.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE188]
gi|430984902|gb|ELD01519.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE201]
gi|431028034|gb|ELD41079.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE214]
gi|431042359|gb|ELD52851.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE220]
gi|431054922|gb|ELD64491.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE230]
gi|431103321|gb|ELE07991.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE53]
gi|431133211|gb|ELE35209.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE60]
gi|431140433|gb|ELE42204.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE67]
gi|431193548|gb|ELE92884.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE87]
gi|431332268|gb|ELG19511.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE63]
gi|431482478|gb|ELH62181.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE209]
gi|431509446|gb|ELH87697.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE218]
gi|431514432|gb|ELH92274.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE223]
gi|431573996|gb|ELI46785.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE124]
gi|431609359|gb|ELI78684.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE137]
gi|431637100|gb|ELJ05219.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE153]
gi|431649572|gb|ELJ16919.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE160]
gi|431665247|gb|ELJ31974.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE167]
gi|431676999|gb|ELJ43082.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE174]
gi|431736233|gb|ELJ99575.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE99]
gi|441712236|emb|CCQ07701.1| Deoxyribodipyrimidine photolyase [Escherichia coli Nissle 1917]
Length = 472
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 239/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ R +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAELINTQLNALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD ++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQAERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPAPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ +
Sbjct: 213 RQFCLNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQVLEGGPGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EK G+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWKWA----EKTGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|329998823|ref|ZP_08303226.1| deoxyribodipyrimidine photo-lyase, partial [Klebsiella sp. MS 92-3]
gi|328538550|gb|EGF64657.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3]
Length = 461
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/432 (30%), Positives = 232/432 (53%), Gaps = 32/432 (7%)
Query: 28 IEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDK 87
++ + ++ E I L ++D + + + + + + + N+ YE RD
Sbjct: 59 LQSLHAALAERGIPLWVEEAD---DFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDA 115
Query: 88 LIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYP 147
++ L+ + C+ F D V+ +L G+ Y +F+ ++ +I +++
Sbjct: 116 AVENTLRDVICQGFD--DSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDG-------- 165
Query: 148 VKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIK- 206
L V + K + L +L + ++ L A L F ++
Sbjct: 166 ----LPACVAAPKPRQAPARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAA 221
Query: 207 NYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKT-DCIGYFTWLSQLIW 265
+Y R++P++ GTS LS L G +S R+ + + + +H D TWL++LIW
Sbjct: 222 DYEGQRDFPAVEGTSRLSPCLAIGVLSPRQC---LHRLLTEHPAALDGGAGATWLNELIW 278
Query: 266 RDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
R+FY+ ++ YP + + F D + W ++ + + W +G TG+P++D+A+ QLN
Sbjct: 279 REFYRHLMVYYPKLCKGRPFTAWTDKVAWRAE---EASLQAWQRGETGFPIVDAAMRQLN 335
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
++G+MHNRLRM+ ASFL K++ ++W+ GE YF ++L D DLA+NNG WQW+AS+G + P
Sbjct: 336 ATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAP 395
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FRIFNP Q +KFD QG+FIR++LP+L+K+ K +H PW + +K GI L +Y +
Sbjct: 396 YFRIFNPTTQGEKFDKQGVFIRRWLPELAKVPEKALHQPWAWA----DKQGITL--DYSR 449
Query: 445 PILEHSLSKKNI 456
PI++H +++
Sbjct: 450 PIVDHKQARQET 461
>gi|421649527|ref|ZP_16089918.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC0162]
gi|425750310|ref|ZP_18868277.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-348]
gi|445460376|ref|ZP_21448285.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC047]
gi|408513531|gb|EKK15149.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC0162]
gi|425487712|gb|EKU54070.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-348]
gi|444773611|gb|ELW97707.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC047]
Length = 480
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 160/451 (35%), Positives = 246/451 (54%), Gaps = 32/451 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I F + + L L L+I+ KEI + K NI+ V N +
Sbjct: 51 KISFYLRQLRTLQKELAALHIPLVIQVIPDWKEIANFISDFSKKYNIENVYANIEIGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK ++ L G + F + D+ IF I N++ +PY +FS ++K K+ ++
Sbjct: 111 LKRDKTVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGL- 169
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG--FCKSNLSSLGI---KTGASGAKIL 197
Q YPV + N + + I L+++ FC S+LS G A
Sbjct: 170 PQCYPVPNKQNEVPLD-----FLQGKNIDLDEIEKLFC-SSLSKEQQDLWPVGEQYALEQ 223
Query: 198 LNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L+ FI++ + +Y + R++P I TS LS +L G +SIR+ ++ +F+ ++ G
Sbjct: 224 LDQFIEESVCHYKVERDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQ 283
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TWL +L+WR+FYQ IL+ +P+V FKK+ I W N+ ++ W G TG P+
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKW---NHNPEHLTAWQMGQTGIPI 340
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW
Sbjct: 341 VDAGMQQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWC 400
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNPI QSKKFD +G +IR+++ +L+ L NK IH P+ + +
Sbjct: 401 ASTGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYSSKT------- 453
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
LG NYPKPI++ K+ LK KNI
Sbjct: 454 -DLGLNYPKPIVD---LKETRLKAIETFKNI 480
>gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143]
gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143]
Length = 477
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 226/410 (55%), Gaps = 20/410 (4%)
Query: 60 IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG 119
+ L + V+ N YEP I RD IK LK G S+ +++E ++L K G
Sbjct: 74 LGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLKESGLDVQSFNGSLLWEPWQVLKKDG 133
Query: 120 KPYSIFS-FYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFC 178
PY +F+ +Y++ + V + P K+ L V S ++ N N+ L + +
Sbjct: 134 TPYKVFTPYYRRGCLSTVAPRR---PMDPPKT-LKVFVDSGDSLELDNLNL--LPKIAWD 187
Query: 179 KSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+S + I A+ A+ L+ F+ ++++Y RN+P+ S LS +L FG IS
Sbjct: 188 ESMKACWDISEAAAHAR--LDEFVMNELQDYREGRNFPAKQNVSRLSPYLHFGQISPNSA 245
Query: 238 ---VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
FI D T++S+L WR+F +LY +P + ++ + +D W
Sbjct: 246 WYRAAEAGAFINNEQSLD-----TFMSELGWREFSYYLLYHWPKLPTENLQTRFDLFPWA 300
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
N ++ W +G TGYPL+D+ + +L S+GYMHNR+RMV SFL+KN+ I+W GE
Sbjct: 301 --NNTDEDLSAWQQGKTGYPLVDAGMRELYSTGYMHNRVRMVVGSFLVKNLLIHWHRGEE 358
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
+F + L D DLASN+ +WQW A G + PFFRIFNPI QS+KFD QG +IR+Y+P+L
Sbjct: 359 WFWDCLVDADLASNSASWQWIAGCGADAAPFFRIFNPITQSEKFDKQGSYIRRYVPELKD 418
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ KYIH+PW A + L AG+ +G NYP+P+++ +S+ L+ + K
Sbjct: 419 MPEKYIHAPWLAPAEVLAVAGVNIGINYPEPVVDIKVSRARALEAFAVTK 468
>gi|74311231|ref|YP_309650.1| deoxyribodipyrimidine photolyase [Shigella sonnei Ss046]
gi|383177275|ref|YP_005455280.1| deoxyribodipyrimidine photolyase [Shigella sonnei 53G]
gi|414574906|ref|ZP_11432114.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 3233-85]
gi|415852664|ref|ZP_11529001.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 53G]
gi|418262740|ref|ZP_12884110.1| deoxyribodipyrimidine photolyase [Shigella sonnei str. Moseley]
gi|420357235|ref|ZP_14858251.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 3226-85]
gi|420362190|ref|ZP_14863113.1| deoxyribodipyrimidine photolyase [Shigella sonnei 4822-66]
gi|73854708|gb|AAZ87415.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
sonnei Ss046]
gi|323163860|gb|EFZ49670.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 53G]
gi|391288522|gb|EIQ47023.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 3233-85]
gi|391288971|gb|EIQ47470.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 3226-85]
gi|391296578|gb|EIQ54667.1| deoxyribodipyrimidine photolyase [Shigella sonnei 4822-66]
gi|397902948|gb|EJL19256.1| deoxyribodipyrimidine photolyase [Shigella sonnei str. Moseley]
Length = 472
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 241/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGVGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPIIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDLEGEFIRQWLPELRNVPGKSVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 KL--DYPQPIVEHKEARVQTLAAYEAAR 469
>gi|421806773|ref|ZP_16242635.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC035]
gi|410417316|gb|EKP69086.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC035]
Length = 480
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 161/451 (35%), Positives = 247/451 (54%), Gaps = 32/451 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I F + + L L L+I+ KEI + K NI+ V N +
Sbjct: 51 KISFYLRQLRTLQKELSALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK ++ L G + F + D+ IF I N++ +PY +FS ++K K+ ++
Sbjct: 111 LKRDKNVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGL- 169
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG--FCKSNLSSLGI---KTGASGAKIL 197
Q YPV + N + + I L+++ FC S+LS G A
Sbjct: 170 PQCYPVPNKQNEVPLD-----FLQGKNIDLDEIEKLFC-SSLSKEQQDLWPVGEQYALEQ 223
Query: 198 LNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L+ FI++ + +YN+ R+ P I GTS LS +L G +S+R+ ++ +F+ ++ G
Sbjct: 224 LDQFIEESVCHYNVERDSPHIQGTSKLSPYLNIGILSVRQCLQALFRNQHGNFHLVNEGQ 283
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TWL +L+WR+FYQ IL+ +P+V FKK+ I W N+ ++ W G TG P+
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKW---NHNPEHLTAWQMGQTGIPI 340
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW
Sbjct: 341 VDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWC 400
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNPI QSKKFD +G +IR+++ +L+ L NK IH P+ + +
Sbjct: 401 ASTGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYSSKT------- 453
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
LG NYPKPI++ K+ LK KNI
Sbjct: 454 -DLGLNYPKPIVD---LKETRLKAIKTFKNI 480
>gi|422909456|ref|ZP_16944104.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-09]
gi|424658839|ref|ZP_18096090.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-16]
gi|341635145|gb|EGS59869.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-09]
gi|408053914|gb|EKG88912.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-16]
Length = 469
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 237/451 (52%), Gaps = 41/451 (9%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKV------ 136
RD+ ++ L G + ++ D+ + + K G+ + +F+ +++ W+
Sbjct: 108 QQRDQTAQQLLTEQGIAWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 137 KSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKI 196
K+ L P S L + + N + F + S +
Sbjct: 168 KNRSAALWDVP-----------SALAEWVWNP-----EQTFDYPRVDSTPWAADFETVRA 211
Query: 197 LLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIG 255
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 212 QLRDFCRERVQDYHQARDFPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--G 269
Query: 256 YFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP
Sbjct: 270 AQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGNTGYP 326
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
++D+A+ QLN G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 327 IVDAAMRQLNQIGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQW 386
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 387 CASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNS 443
Query: 435 GIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 444 VL-----YPARLVDHKQEREVTLRLYKTAKG 469
>gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454]
gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia
rhizoxinica HKI 454]
Length = 522
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 140/479 (29%), Positives = 245/479 (51%), Gaps = 31/479 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V CV++ D + R G ++ +S+ L+ L +L + + S+ I+
Sbjct: 49 VVCVYVHDPAPRN-TRPPGAAGR---WWLHESLRALNAALVALGGELTVLHGSESQAIEA 104
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ + V N Y D IK LK G F++ ++ E + + G+P+
Sbjct: 105 FAVAIGAIKVCWNRRYSAPQRETDTAIKTALKERGIAVFTFNGHLLREPWAVATRDGRPF 164
Query: 123 SIFSFYQKKW-----IEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
+FS Y + E + + +PV + ++ N + ++L
Sbjct: 165 QVFSAYWRAARHQYSPEAPQPAPQRINFFPVPDNIGVAA------RVENLSALALQPRTP 218
Query: 178 CKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
++ + G + L+ F+ + Y R+ P++ TS LS +LRFG +S R+
Sbjct: 219 DWASGLRETWQCGEQAGQTQLDAFLANALTRYASGRDVPAMQATSRLSPYLRFGNLSARQ 278
Query: 237 L--VKLIFKFIKKH---YKTDCI---GYFTWLSQLIWRDF-YQMILYCYP-NVVNKSFKK 286
+ L + +H + C G +L +L WR+F Y ++ +C P + VN FK+
Sbjct: 279 VWHAALSAARVGRHCGDARRTCTASSGVDKFLDELGWREFSYYLLYHCAPLHQVN--FKR 336
Query: 287 EYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMG 346
++D + W +D + W G TGYPL+D+ + +L +G+MHNR+RMVTASFL+K++
Sbjct: 337 QFDTMPWRADT---ADLRAWQHGRTGYPLVDAGMRELWHTGWMHNRVRMVTASFLVKHLL 393
Query: 347 INWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIR 406
INW+ GE +F + L D D ASN NWQW A SG + P+FRIFNP++Q +KFD QG ++R
Sbjct: 394 INWREGEAWFWDTLVDADEASNPANWQWVAGSGADAAPYFRIFNPVLQGQKFDPQGAYVR 453
Query: 407 KYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+++P+L+++ + +H+PW A +L A + LG++YP P++ H +++ LK ++
Sbjct: 454 RWVPELARVPSGCVHAPWLAQPAQLASASVRLGQDYPLPVVPHQQARERALKAMEHMRG 512
>gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
Length = 502
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 229/440 (52%), Gaps = 17/440 (3%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L+ NL LI+R A+ E+ +L AV N YEP RD+
Sbjct: 75 WLHHSLDALTTNLHKRHHQLILRSGSAATEMTRLAEDCKAAAVFWNRCYEPADRERDEKT 134
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVK 149
+L G + S+ ++ E + K G PY +F+ + K +S + P
Sbjct: 135 ADKLAQAGYQVRSFPGSLLIEPWTLSTKQGDPYQVFTPFWKA----ARSRVEFASPLPAP 190
Query: 150 SYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNY 208
L ++ + ++ D ++ K G A F+ I Y
Sbjct: 191 ESLKTPDQWPDSEELADWKLLPTLDW----ADEFPERWKPGEDAAHAAWQKFLDDNIAEY 246
Query: 209 NINRNYPSINGTSYLSIHLRFGTISIRKL-VKLIFKFIKKHYKTDCI--GYFTWLSQLIW 265
R+ PS +GTS LS HL +G IS R++ + + K +K T+ +LS++ W
Sbjct: 247 GTERDVPSHHGTSRLSPHLHYGEISPRQIYAEAVEKMNRKQTATESFEKNVNVYLSEIGW 306
Query: 266 RDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN-WCKGYTGYPLIDSAIIQLN 324
R+F +LY +P+ ++++ + WE+ KK++L W +G TGYP++D+ + +L
Sbjct: 307 REFGYHVLYHFPHTPENPLREKFADFNWET----KKSWLKAWQQGQTGYPIVDAGMRELW 362
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
+G+MHNR+RM+ ASFL K++ I+W G +F + L D DLA+N WQW++ G + P
Sbjct: 363 RTGWMHNRVRMIVASFLTKDLRIHWLEGSKWFWDTLVDADLANNTLGWQWASGCGADAAP 422
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
+FR+FNP QS+KFD +G ++R++ P+L+ L +KY+H P A L KAG+ LGK+YP+
Sbjct: 423 YFRVFNPTRQSEKFDPKGNYLRRWCPELADLPDKYLHCPADAPESVLNKAGVRLGKDYPE 482
Query: 445 PILEHSLSKKNILKRYNFIK 464
PI++H+ + L + +K
Sbjct: 483 PIVDHAEQRDAALAEWEKVK 502
>gi|335436625|ref|ZP_08559418.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
gi|334897588|gb|EGM35719.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
Length = 470
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/465 (29%), Positives = 232/465 (49%), Gaps = 28/465 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V F+FD +L R+ + +++ EL + SDL++ +
Sbjct: 30 VLPAFVFDPAVL------AHAGPPRVAALLEAVSELRDAYRERGSDLVVARGDPQTVLPT 83
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + V N DY RD +++ L G + + D V+ E I G PY
Sbjct: 84 LADEFGAERVTWNRDYTRLGRKRDAAVREALDDAGVERAAVHDAVLHEPGTIRTNDGDPY 143
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+++ KKW ++ KS + + + + + + +L DL
Sbjct: 144 QVFTYFWKKWRDREKSPAVDAPAPAALADVED-----------DTPVPTLADLS-VDEPA 191
Query: 183 SSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIF 242
+SL T + + L + + I Y R+YP+ TS LS HL +GTI IR++ +
Sbjct: 192 ASLPTVTSTAARERLADFCAEDIYRYEDRRDYPADGCTSRLSQHLAYGTIGIREVYEATE 251
Query: 243 K-FIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + + + + SQL WR+FY +L+ P+VV ++FK + I W SD +
Sbjct: 252 EAYARSDSDAERESVREFQSQLAWREFYTQVLWFNPSVVTENFKTYENPIEWRSD---PE 308
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
W G TGYP++D+ + QL + YMHNR+RM+ ASFL K++ I+W+ G ++F +L
Sbjct: 309 GLQAWKDGETGYPIVDAGMRQLEAEAYMHNRVRMIVASFLTKDLLIDWRKGYDWFRKRLV 368
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D D A++NG WQW+AS+G +QP+FRIFNP+ Q ++D +IR+Y+P+L + IH
Sbjct: 369 DHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGDRYDPDAEYIREYVPELDGVPADAIH 428
Query: 422 SPWKASSYKLEKAGIIL-GKNYPKPILEHSLSKKNILKRYNFIKN 465
S W ++L+ + +YP PI++H+ ++ L + +
Sbjct: 429 S-W----HELDPGTREMHAPDYPAPIVDHAERREAALAMFEAARG 468
>gi|422804668|ref|ZP_16853100.1| DNA photolyase [Escherichia fergusonii B253]
gi|324114816|gb|EGC08784.1| DNA photolyase [Escherichia fergusonii B253]
Length = 472
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 238/448 (53%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ + + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERARRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ V + K+ + + L + + + + L
Sbjct: 165 G------------MPECVAAPKVRSSGSLDPAPSITLNYPRQSFDTAHFPVEEKAVIAQL 212
Query: 199 NNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQSGAGEYEQQRDFPAVEGTSRLSASLATGRLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLMTYHPSLCKHRPFIAWTDRVQWQSN---PAHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKAVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI++H ++ L Y K
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAVYEEAK 469
>gi|161504129|ref|YP_001571241.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160865476|gb|ABX22099.1| hypothetical protein SARI_02227 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 473
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/449 (30%), Positives = 239/449 (53%), Gaps = 45/449 (10%)
Query: 20 QGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYE 79
Q + ++ I +F + + S +++ +K + + ++ + N++YE
Sbjct: 63 QTALAEKGIPLLFHEVADFSASIET---------------VKNVCRQHDVSHLFYNYEYE 107
Query: 80 PQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN 139
RD ++K L+ + C+ F D VI ++ + Y +F+ ++ W++++K +
Sbjct: 108 VNERQRDAAVEKALQSVICEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLKED 165
Query: 140 --KCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
C P + S+ L +SLN + + + + A
Sbjct: 166 IPPCV----PAPKIRASGALSTPL------TPVSLN---YPQQAFDAALFPVEENAAIAQ 212
Query: 198 LNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 LRQFCAQGADGYASRRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGPG 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WL++LIWR+FY+ ++ YP + ++ F + + W+ + + F W KG TGYP+
Sbjct: 271 SVWLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVTWQENPH---YFQAWRKGETGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN++G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+
Sbjct: 328 VDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWA 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNP Q ++FD G FIR++LP L + K IH PW+ + EKAG
Sbjct: 388 ASTGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWA----EKAG 443
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIK 464
++L +YP+PI++H ++ L Y +
Sbjct: 444 VVL--DYPRPIVDHKQARIATLSAYEAAR 470
>gi|39936242|ref|NP_948518.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
CGA009]
gi|39650097|emb|CAE28620.1| Deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
CGA009]
Length = 483
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/467 (30%), Positives = 238/467 (50%), Gaps = 24/467 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V CV++ D+ + D +R+ G ++ +S+ L L+ LI+R + + +
Sbjct: 36 VLCVYVLDE-VSDDVRALGGAVR---WWLAQSLRALESELRALGGALILRRGPTAAVLAE 91
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L + + AV N + L V G + ++ + E + I +K G+
Sbjct: 92 LAQQHDAAAVHWNEIEIAAHRAVADALADALTVAGIAYHRHRGDTLVEPSAIRSKDGRGM 151
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + ++ V S Q P + L + + +S L +
Sbjct: 152 RVFTPFWRR----VLSLGDPPQPLPRPTTL-------RPAPAVPTEQLSDWQLEPTAPDW 200
Query: 183 SSLGIK----TGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238
+ G++ G + A+ L F+ Y R+YP + TS LS HLRFG IS R+ V
Sbjct: 201 AG-GLRQTWTPGEAAAQTRLAAFLAMQPGYAEGRDYPDRHITSGLSPHLRFGEISPRQ-V 258
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+F +LS++ WR+F + +L+ +P++ +++ + +D W+SD+
Sbjct: 259 WYAARFAAAERPAIAPDIDKFLSEVGWREFCRHLLFDHPDLASRNLQPAFDAFPWQSDDA 318
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
W +G TGYP++D+ + +L SG MHNR+RMV SFL+K++ I+W+ GE +F +
Sbjct: 319 V---LTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGSFLVKHLLIDWRLGEQWFWD 375
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D D SN GNWQW A G + P+FR+FNP++QS+KFD G +IR+++P+L++L N
Sbjct: 376 TLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDAGGAYIRRWVPELARLPND 435
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IH PW A+ +L AGI LG NYP PI++H ++ L Y ++
Sbjct: 436 LIHQPWTATPLELAAAGIKLGGNYPGPIVDHKTGRQRALSAYAELRQ 482
>gi|421789719|ref|ZP_16225967.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-82]
gi|410397859|gb|EKP50098.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-82]
Length = 480
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 160/451 (35%), Positives = 246/451 (54%), Gaps = 32/451 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I F + + L L L+I+ KEI + K NI+ V N +
Sbjct: 51 KISFYLRQLRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK ++ L G + F + D+ IF I N++ +PY +FS ++K K+ ++
Sbjct: 111 LKRDKNVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLS 170
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG--FCKSNLSSLGI---KTGASGAKIL 197
Q YPV + N + + I L+++ FC S+LS G A
Sbjct: 171 -QCYPVPNKQNEVPLD-----FLQGKNIDLDEIEKLFC-SSLSKEQQDLWPVGEQYALEQ 223
Query: 198 LNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L+ FI++ + +Y + R++P I TS LS +L G +SIR+ ++ +F+ ++ G
Sbjct: 224 LDQFIEESVCHYKVERDFPHIQATSKLSPYLNMGILSIRQCLQALFRNQHGNFHLVTEGQ 283
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TWL +L+WR+FYQ IL+ +P+V FKK+ I W N+ ++ W G TG P+
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKW---NHNPEHLTAWQMGQTGIPI 340
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW
Sbjct: 341 VDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWC 400
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNPI QSKKFD +G +IR+++ +L+ L NK IH P+ + +
Sbjct: 401 ASTGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYSSKT------- 453
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
LG NYPKPI++ K+ LK KNI
Sbjct: 454 -DLGLNYPKPIVD---LKETRLKAIETFKNI 480
>gi|421673232|ref|ZP_16113176.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC065]
gi|421689964|ref|ZP_16129637.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-116]
gi|404565468|gb|EKA70636.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-116]
gi|410387051|gb|EKP39511.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC065]
Length = 480
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 161/451 (35%), Positives = 246/451 (54%), Gaps = 32/451 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I F + + L L L+I+ KEI + K NI+ V N +
Sbjct: 51 KISFYLRQLRTLQKELSALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK ++ L G + F + D+ IF I N++ +PY +FS ++K K+ ++
Sbjct: 111 LKRDKNVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGL- 169
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG--FCKSNLSSLGI---KTGASGAKIL 197
Q YPV + N + + I L+++ FC S+LS G A
Sbjct: 170 PQCYPVPNKQNEVPLD-----FLQGKNIDLDEIEKLFC-SSLSKEQQDLWPVGEQYALEQ 223
Query: 198 LNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L+ FI++ + +YN+ R+ P I GTS LS +L G +S+R+ ++ +F+ ++ G
Sbjct: 224 LDQFIEESVCHYNVERDSPHIQGTSKLSPYLNIGILSVRQCLQALFRNQHGNFHLVNEGQ 283
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TWL +L+WR+FYQ IL+ +P+V FKK I W N+ ++ W G TG P+
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKNTQKIKW---NHNPEHLTAWQTGQTGIPI 340
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW
Sbjct: 341 VDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWC 400
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNPI QSKKFD +G +IR+++ +L+ L NK IH P+ + +
Sbjct: 401 ASTGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYSSKT------- 453
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
LG NYPKPI++ K+ LK KNI
Sbjct: 454 -DLGLNYPKPIVD---LKETRLKAIETFKNI 480
>gi|414070032|ref|ZP_11406021.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. Bsw20308]
gi|410807544|gb|EKS13521.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. Bsw20308]
Length = 464
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 131/400 (32%), Positives = 225/400 (56%), Gaps = 25/400 (6%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR+ ++ + + I L ++ + ++E+ ++ V+ N +YE + R
Sbjct: 54 RRVTYLQSQLADYGITLHIIEAP---SFCDCTRELINFCKANDVKHVIANTEYELNEVNR 110
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
DK I E F Y+ +I + N++ + Y +F+ +++ W+++ + L
Sbjct: 111 DKAILHECDERTITFTLYEGDLIAPAGSVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQ 170
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KK 204
+P+ S + I ++ K++ S +++NFI K
Sbjct: 171 WPLTS-----------------DPIEFDESDLLKNDGCSDKWPVDDETLSTVVDNFICDK 213
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ +Y+ R+ PS+ GTS LS +L G +S ++L+ I + T FTW+++L+
Sbjct: 214 LTSYDDQRDIPSVKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELV 273
Query: 265 WRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+FY+ ++ +P + +F ++Y+ ++W ++ +F WC+G TGYPL+D+A++QL
Sbjct: 274 WREFYRHLIAEFPKLSRGDNFNEKYNAVVWRK---SESDFKAWCEGRTGYPLVDAAMLQL 330
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G+MHNRLRMV ASFL K++ I+W+ GE +F L D DLASNNG WQW+AS+GC +Q
Sbjct: 331 KQTGWMHNRLRMVVASFLTKHLLIDWREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQ 390
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
P+FR+FNPI QS++FD G FIRKYLP+L + +K+IH P
Sbjct: 391 PYFRVFNPIRQSERFDPTGKFIRKYLPELENVPDKHIHFP 430
>gi|293409079|ref|ZP_06652655.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469547|gb|EFF12031.1| conserved hypothetical protein [Escherichia coli B354]
Length = 472
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ +A + + ++++ + + + N+ Y
Sbjct: 47 MSPRQAEFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGTVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+ + +F W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPFIVWTDRVQWQRN---PTHFKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + EKAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRNVPGKAVHEPWKWA----EKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|261344548|ref|ZP_05972192.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
gi|282567462|gb|EFB72997.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
Length = 478
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 248/469 (52%), Gaps = 40/469 (8%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIAS 57
+V VFI D S G+ R+I F+ +++IEL L L+ +A ++
Sbjct: 31 QVIGVFIATP---DQWASHGV-SPRQITFMHQNLIELQRALAERGIPLVCHTVSTFADSA 86
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
K + + + + A+ N YE RD+ + + + + FSY D V+ + +
Sbjct: 87 KWLLEYAKQQQVKALFFNQQYELNERQRDQWVTQHAQSLNV--FSYDDAVLISPGVVQTQ 144
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
G+ Y +++ +++ +L + Y + + II +N L F
Sbjct: 145 KGEMYQVYTPFRR----------AFLSQLMMTDYRSLPAPKPRSEPIIIDNSQPL----F 190
Query: 178 CKSNLS-SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
+ + + G A L F + ++++Y +R+ PSI+GTS LS +L GT+S R
Sbjct: 191 PHTPVEIAPQFIAGEQAALAKLRLFCRERVQDYQRDRDIPSIDGTSQLSPYLAIGTLSPR 250
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWE 294
+ V + + + G F+WL++L+WR+FY +L +P + ++ F + +I W
Sbjct: 251 QCVNRLLAENPHIFDSPDSGGFSWLNELVWREFYSHLLVAFPRLCRHQPFIEWTQHIQWN 310
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
D A F W G TGYP++D+A+ QLN +G+MHNRLRM+ ASFL+K++ I+W+ GE+
Sbjct: 311 PDEDA---FTAWKTGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLLIDWRKGEH 367
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF ++L D LA+NNG WQWSAS+G + P+FRIFNP Q KKFD QG FI K+LP+L
Sbjct: 368 YFISQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIHKWLPELRN 427
Query: 415 LSNKYIHSP--WKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYN 461
+ ++IH P W S+ + NYP PI++H ++ N L+ +
Sbjct: 428 VPEQFIHEPHTWAESNQ--------VTLNYPTPIVDHKQARLNTLEAFE 468
>gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
Length = 479
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 220/442 (49%), Gaps = 22/442 (4%)
Query: 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLI 89
++ S+ L L L++R A ++ L+ AV N YEP A+ RD+ +
Sbjct: 54 YLHHSLKALGPALAQAGIPLVLRRGPALATLRALIRATGAGAVYWNRLYEPDAVARDRTV 113
Query: 90 KKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFY----QKKWIEKVKSNKCYLQS 145
K+ L+ G S+ ++ E + N+ +PY F+ + +++ L+
Sbjct: 114 KQALRTEGLDCRSFPTALLHEPWAVRNQADRPYRAFTPFWRACRRQPPPAAPLPAPDLRD 173
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-K 204
PV + + + D G + + G S A L F +
Sbjct: 174 RPVPAV------EGLDLAALGLLPRTPWDTGLRNT------WQAGESAALARLEAFAADR 221
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ Y +R+ P+ GTS LS L FG +S R++ + + D F LS+L
Sbjct: 222 LARYAQDRDRPAEPGTSGLSPALHFGELSPRQVWWQVMAAREAGVPEDACETF--LSELG 279
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLN-WCKGYTGYPLIDSAIIQL 323
WR+F +L+ +P++ + + W D +L+ W G TG PL+D+ + +L
Sbjct: 280 WREFAHHLLWSHPDLGDAPVDDRFGAFPWRPDP--GDGWLHAWQAGRTGIPLVDAGMHEL 337
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G+MHNR+RMVT SFL+K++ + W+ GE +F + L D+D ASN WQW A G +
Sbjct: 338 WQTGWMHNRVRMVTGSFLVKHLRLPWQRGERWFRDTLVDWDAASNAMGWQWVAGCGADAA 397
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYP 443
P+FRIFNP+ Q ++FD QG ++R++LP L+ L +KYIH+PW A L +AG+ LG +YP
Sbjct: 398 PYFRIFNPVRQGERFDPQGRYVRRWLPALANLPDKYIHAPWTAPEAVLRRAGVTLGSDYP 457
Query: 444 KPILEHSLSKKNILKRYNFIKN 465
P+++ L ++ L + IK
Sbjct: 458 CPLIDLRLGREQALSAFQAIKG 479
>gi|410995660|gb|AFV97125.1| hypothetical protein B649_04055 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 456
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 252/463 (54%), Gaps = 45/463 (9%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V +FIFD NIL L + +DRRI FI+ S+I L +L+ DL I Y S+ +
Sbjct: 25 VLPLFIFDPNILSSLDA----DDRRISFIYHSLINLKTSLKKMGLDLAIFYGKPSEVFQW 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSY-KDQVIFEKNEILNKTGKP 121
L++ + D V + DY+ A+ RD+ I L F+Y D IF +E++ G P
Sbjct: 81 LLLHDHYDEVCASGDYDRYALERDRQISHLLP------FNYLHDTYIFRSDEVVKNDGTP 134
Query: 122 YSIFS-FYQKKWIEKVKSNKCYLQSY-PVKSYLNNLVHSSKLHKII----NNNIISLNDL 175
Y +F+ FY + K+ ++ Y PV+ L++ + S LH+I I L +
Sbjct: 135 YQVFTPFYNRA---KILFTPFHMHEYLPVQQQLHSFDYES-LHQITCMEYAKAPIELESI 190
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIR 235
GF + I + L F K+++Y NR++ TS LS +RFGTISIR
Sbjct: 191 GFAHN-----PIPQQERSPETKLGLFASKLEHYANNRDFMVQETTSDLSSDVRFGTISIR 245
Query: 236 KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295
L++ + I+K D +F QLI+R+FY M+L +P++ ++F+ + I +
Sbjct: 246 ALLRWMS--IQKKEGIDTEPFF---RQLIFREFYAMLLVHFPHLSERNFRYPFKGI--PN 298
Query: 296 DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENY 355
+Y F +C TG P++D+ I +L +G MHNR+RM+TASF KN+ + W+WGE++
Sbjct: 299 TDY----FEAFCTARTGVPIVDAGIRELLQTGRMHNRVRMITASFFTKNLLLPWQWGEHF 354
Query: 356 FANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKL 415
FA L D+D +SN +WQWSA +G QP+FRIFNP Q+ KFD +G +IR+++P+ +
Sbjct: 355 FAKYLIDYDASSNILSWQWSAGTGVDPQPYFRIFNPYAQAAKFDIKGDYIRRWVPEFGAI 414
Query: 416 SNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILK 458
S + +H+ E ++ NYP PI+ H +S K L+
Sbjct: 415 SPQILHNE--------EALSLLDLNNYPPPIVSHKVSSKKALE 449
>gi|365838261|ref|ZP_09379611.1| deoxyribodipyrimidine photo-lyase [Hafnia alvei ATCC 51873]
gi|364560222|gb|EHM38167.1| deoxyribodipyrimidine photo-lyase [Hafnia alvei ATCC 51873]
Length = 476
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 125/392 (31%), Positives = 222/392 (56%), Gaps = 25/392 (6%)
Query: 75 NHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIE 134
N YE RD + EL C S+ D ++ ++ +G+ Y +F+ ++ +++
Sbjct: 104 NRQYELNERRRDDAVA-ELLAGTCGIHSFDDALLLPPGSVVTGSGEMYKVFTPFRNAFLQ 162
Query: 135 KVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGA 194
++ + ++S P + S++ + + L S+ TG A
Sbjct: 163 RLTHSD--VRSLPAPKTRDQACEMSEI-----------KPFDYPQQGLDSVLFPTGEEAA 209
Query: 195 KILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDC 253
L F ++ +++Y R+ P+++GTS LS +L G +S R+ + + +
Sbjct: 210 LQRLRVFCREHVQDYAQQRDIPAVDGTSVLSPYLAVGVLSPRQCLNRLLAECPDTLEDRE 269
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
G F WL++L+WR+FY+ +L YP + +K F D++ W D ++ W +G TG
Sbjct: 270 SGAFVWLNELVWREFYRHLLVAYPKLCRHKPFIAWTDHVRWSGD---IEHLTAWQQGKTG 326
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
YP++D+A+ QLN +G+MHNRLRM+ ASFL+K++ INW+ GE YF ++L D DLA+NNG W
Sbjct: 327 YPIVDAAMRQLNHTGWMHNRLRMIVASFLVKDLLINWRAGECYFMSQLIDGDLAANNGGW 386
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QW+ASSG + P+FRIFNP Q ++FD +G FIR+++P+L+ + + IH P + ++
Sbjct: 387 QWAASSGTDAAPYFRIFNPTTQGERFDKKGDFIRRWIPELADVPDSDIHHP---HQWAMK 443
Query: 433 KAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ ++ +YP+P+++H+L++K L+ + K
Sbjct: 444 QCRVL---DYPQPLVDHALARKQTLQAFEDAK 472
>gi|312114970|ref|YP_004012566.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
17100]
gi|311220099|gb|ADP71467.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
17100]
Length = 484
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 132/452 (29%), Positives = 229/452 (50%), Gaps = 25/452 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V V+I D R G ++++S+ L +L+ S L++R+ + + +
Sbjct: 36 VLPVYILDDETPGRWRMGGASR----WWLYQSLRSLGADLEARGSRLVLRHGETKRVLGE 91
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L+ + +V+ YEP + +K L+ G + Q++ E I N G+P+
Sbjct: 92 LIEETGARSVLFTRGYEPYQRALEGRLKPSLEARGVSLRRFGGQILVEPESIANLAGEPF 151
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
+F+ + + P L + ++ ++ L + +
Sbjct: 152 RVFTPF----FRALSQRGAPATPLPAPQKL------AAPDSWPRSDALASLALEPTRPDW 201
Query: 183 SSLGIKT----GASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
+ GI+ G + A+ L FI+ + +Y R+ P I+GTS LS HL FG I R++
Sbjct: 202 AG-GIRAAWRPGETAARERLTAFIEAALPSYRTRRDEPGIDGTSRLSPHLAFGEIGPRQI 260
Query: 238 VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDN 297
+ + + L ++ WR+F +L+ +P++ F+ E+ W D
Sbjct: 261 WHAVQAAAEAAGDHAAADAY--LREVGWREFSYHLLFHFPHLPEAPFRPEFTAFPWRDDA 318
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A + W +G TGYP++D+ + QL +G+MHNR+RM+ ASFLIK++ W+ G ++F
Sbjct: 319 DALEA---WQRGRTGYPIVDAGMRQLWQTGWMHNRVRMIVASFLIKHLLSPWQTGADWFW 375
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
+ L D DLA+N +WQW A SG + P+FRIFNP++Q +KFD +G ++R ++P+L+KL
Sbjct: 376 DTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQGEKFDPRGDYVRAFVPELAKLPA 435
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
IH PW AS+ L AG+ LG+ +P PI++H
Sbjct: 436 SLIHKPWTASAAALRDAGVTLGETWPHPIVDH 467
>gi|90415238|ref|ZP_01223172.1| putative photolyase [gamma proteobacterium HTCC2207]
gi|90332561|gb|EAS47731.1| putative photolyase [marine gamma proteobacterium HTCC2207]
Length = 445
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 150/437 (34%), Positives = 237/437 (54%), Gaps = 33/437 (7%)
Query: 42 LQNYDSDLIIRYAIASKE----IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIG 97
LQ+ D L + I S + + +L ++ AV N YEPQ+I RD IK LK G
Sbjct: 26 LQSLDKSLDGKLNIFSGDALAILSELSASMSAKAVYWNRCYEPQSIERDANIKTRLKEAG 85
Query: 98 CKFFSYKDQVIFEKNEILNKTGKPYSIFS-FYQKKWIEKVKSNKCYLQSYPVKSYLNNLV 156
S+ +++E ++L K G PY +F+ +Y++ ++KV Q PV L+ LV
Sbjct: 86 LDVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLQKVAPR----QPLPVPKTLD-LV 140
Query: 157 HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT----GASGAKILLNNFI-KKIKNYNIN 211
+ +N +++ DL + + GAK L++F+ I++Y
Sbjct: 141 KA--------DNSLTVEDLSLLPAIDWDKKLHGDWDISEDGAKDRLDDFVFNGIQDYREG 192
Query: 212 RNYPSINGTSYLSIHLRFGTISIRKLVKLIFK---FIKKHYKTDCIGYFTWLSQLIWRDF 268
RN+P+ S LS + FG +S+ I D T+LS+L WR+F
Sbjct: 193 RNFPNKKNVSRLSPYFHFGQMSVNTAWYAANDAAALIDNESNLD-----TFLSELGWREF 247
Query: 269 YQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGY 328
+LY +P + + ++ ++ W + A+ W KG TGYPL+D+ + +L +GY
Sbjct: 248 SYYLLYHFPKLPTDNLQQRFNVFPWAKNTDAE--LKAWQKGKTGYPLVDAGMRELYGTGY 305
Query: 329 MHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRI 388
MHNR+RMV SF++KN+ I+W GE +F + L D DLA+N+ +WQW A G + PFFRI
Sbjct: 306 MHNRVRMVVGSFMVKNLLIHWHSGERWFWDCLVDADLAANSASWQWIAGCGADAAPFFRI 365
Query: 389 FNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
FNPI QS+KFD QG +IR+++P+L+++ KYIH+PW A + L AG+ +G +YP PI++
Sbjct: 366 FNPITQSEKFDKQGDYIRRHVPELAEMPAKYIHAPWLAPADVLAAAGVEIGTDYPAPIID 425
Query: 449 HSLSKKNILKRYNFIKN 465
S++ L + KN
Sbjct: 426 IKESRERALAAFKMTKN 442
>gi|417359199|ref|YP_002934281.2| deoxyribodipyrimidine photo-lyase, putative [Edwardsiella ictaluri
93-146]
gi|409033366|gb|ACR70046.2| deoxyribodipyrimidine photo-lyase, putative [Edwardsiella ictaluri
93-146]
Length = 476
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 235/443 (53%), Gaps = 35/443 (7%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ +FI+++++ L + L L + YA ++ ++++ ++ DA+ +N Y
Sbjct: 47 MAPRQAQFIWQNLLALQVTLGQRQIPLYCLSVDDYAAQARAVREVCLRERADALFVNRQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD + L I C FF D ++ +L G+ + +F+ +++ ++ + S
Sbjct: 107 ELNERRRDDALAAAL-TIPCHFFD--DALLLAPGTVLTGAGQMFKVFTPFKRAFLRGLMS 163
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
L+ P S + + + + + + S G + A+ L
Sbjct: 164 AD--LRVLPAPSP----------RQPGSAPPVQAERFNYPDAEVDSALFPAGEAAAQTRL 211
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFK--FIKKHYKTDCIG 255
F + Y R++P+ GTS LS +L G +S R+ + + + + G
Sbjct: 212 VQFCHGALAAYAARRDFPAQAGTSQLSPYLTLGVLSPRQCLAALQPQALVSPGLSS---G 268
Query: 256 YFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314
WL++LIWR+FY+ +L +P++ ++ F I W D L W +G TG+P
Sbjct: 269 AEAWLNELIWREFYRHLLVAWPDLCRHRPFIPWTARIRWRDD---PAGLLRWQQGMTGFP 325
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
L+D+A+ QLN G+MHNRLRM+TASFL+K++ I+W+ GE YF +L D DLA+NNG WQW
Sbjct: 326 LVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLIDWRLGERYFLRQLLDGDLAANNGGWQW 385
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
+AS+G + P+FRIFNP +Q +++D QG FIR++LP+L + + IH P + L +
Sbjct: 386 AASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRWLPELRDVPDSDIHHP---QRWALRRQ 442
Query: 435 GIILGKNYPKPILEHSLSKKNIL 457
++ +YP P ++H+ ++++ L
Sbjct: 443 RVL---DYPDPQVDHARARQDTL 462
>gi|359449397|ref|ZP_09238892.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20480]
gi|358044831|dbj|GAA75141.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20480]
Length = 464
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 224/400 (56%), Gaps = 25/400 (6%)
Query: 26 RRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIR 85
RR+ ++ + + I L ++ ++ E+ +I ++ N +YE + R
Sbjct: 54 RRVTYLQEQLANFGITLNVINAP---SFSDCESELLSFCETHDIQHIIANTEYELNEVNR 110
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
DK + + F Y+ +I I N++ + Y +F+ +++ W+++ + L
Sbjct: 111 DKAVLAQCDKRSITFTLYEGDLIAPVGSIKNQSNEMYKVFTPFKRAWLKQYQDTHFSLAQ 170
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KK 204
+P++ N I + +S+ SS +++NFI K
Sbjct: 171 WPLE-----------------QNPIKIEKSQHLESDCSSDKWPVDDETLLSVVDNFICDK 213
Query: 205 IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI 264
+ +Y+ R+ PSI GTS LS +L G IS ++L+ I + T FTW+++LI
Sbjct: 214 LTSYDDQRDIPSIKGTSGLSPYLALGIISPKQLLINIQQRYPDILTTSKSKTFTWVNELI 273
Query: 265 WRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
WR+FY+ ++ YP + ++F ++Y+ + W ++K F WC+G TGYPL+D+A++QL
Sbjct: 274 WREFYRHLIAEYPKLSRGENFNEKYNPVEWRK---SEKEFNAWCEGRTGYPLVDAAMLQL 330
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
+G+MHNRLRMV ASFL K++ I+W+ GE +F L D DLASNNG WQW+AS+GC +Q
Sbjct: 331 KQTGWMHNRLRMVVASFLTKHLLIDWREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQ 390
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
P+FRIFNPI QS++FD G FIRKYLP+L + +K+IH P
Sbjct: 391 PYFRIFNPITQSERFDPTGKFIRKYLPELENVPDKHIHFP 430
>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
Synechococcus sp. (Anacystis nidulans)
gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
Length = 484
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 145/468 (30%), Positives = 231/468 (49%), Gaps = 24/468 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
++ +F D IL + R+ ++ + EL Q S L++ I
Sbjct: 30 QLIGLFCLDPQIL----QSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L +L +AV N D EP RD + LK G + DQ++ ++IL+ +G P
Sbjct: 86 QLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
YS++ + K W + K + V L + + ++ + + +L LGF
Sbjct: 146 YSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQL---TAIAPLLLSELPTLKQLGFDWDG 202
Query: 182 LSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
++ G + A L F + I +Y+ RN+P+ GTS LS L+FG I IR+ +
Sbjct: 203 --GFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQA 260
Query: 241 IFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ W +L WR+FYQ LY +P++ + ++ + WE+
Sbjct: 261 ASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENR--- 317
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ F W + TGYP++D+A+ QL +G+MHNR RM+ ASFL K++ I+W+ GE +F
Sbjct: 318 EALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQH 377
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D DLA+NNG WQWSASSG +P RIFNP Q+KKFD +I+++LP+L + K
Sbjct: 378 LVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDATATYIKRWLPELRHVHPKD 436
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+ S +E+ G YP PI+ H+L +K YN +K +
Sbjct: 437 LIS---GEITPIERRG------YPAPIVNHNLRQKQFKALYNQLKAAI 475
>gi|416423152|ref|ZP_11690675.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416428695|ref|ZP_11693984.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416439716|ref|ZP_11700356.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416444834|ref|ZP_11703992.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416449581|ref|ZP_11706808.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459430|ref|ZP_11713931.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416467009|ref|ZP_11717212.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416473672|ref|ZP_11719803.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416485412|ref|ZP_11724651.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416503076|ref|ZP_11732847.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416509292|ref|ZP_11736502.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416522607|ref|ZP_11740592.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416545809|ref|ZP_11753528.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416558610|ref|ZP_11760293.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416576412|ref|ZP_11769047.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416584731|ref|ZP_11774369.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416594841|ref|ZP_11780655.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416601500|ref|ZP_11785045.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416608604|ref|ZP_11789496.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416615021|ref|ZP_11793173.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416626705|ref|ZP_11798769.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416642775|ref|ZP_11805927.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416648729|ref|ZP_11809374.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416655488|ref|ZP_11812567.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416669666|ref|ZP_11819596.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416681465|ref|ZP_11823794.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416705547|ref|ZP_11830956.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416713461|ref|ZP_11837103.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416719207|ref|ZP_11841063.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416724352|ref|ZP_11844812.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416732685|ref|ZP_11849870.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416741040|ref|ZP_11854871.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416744610|ref|ZP_11856680.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416753834|ref|ZP_11861051.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416764810|ref|ZP_11868313.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416767156|ref|ZP_11869684.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|418484814|ref|ZP_13053805.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418491362|ref|ZP_13057884.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418496755|ref|ZP_13063186.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418498328|ref|ZP_13064743.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418504624|ref|ZP_13070980.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418506553|ref|ZP_13072884.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418525841|ref|ZP_13091821.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|322615844|gb|EFY12762.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322621240|gb|EFY18097.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322623660|gb|EFY20498.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628932|gb|EFY25712.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322634912|gb|EFY31642.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636560|gb|EFY33264.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641813|gb|EFY38445.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647801|gb|EFY44281.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322651869|gb|EFY48238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322652634|gb|EFY48983.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658442|gb|EFY54705.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664955|gb|EFY61146.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668375|gb|EFY64531.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322670537|gb|EFY66670.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675277|gb|EFY71353.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679703|gb|EFY75744.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322684821|gb|EFY80820.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323200590|gb|EFZ85665.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202262|gb|EFZ87310.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323213490|gb|EFZ98283.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215324|gb|EGA00069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220237|gb|EGA04693.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323231025|gb|EGA15141.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234142|gb|EGA18231.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238163|gb|EGA22221.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243598|gb|EGA27616.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247378|gb|EGA31337.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251366|gb|EGA35238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323258495|gb|EGA42167.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263118|gb|EGA46658.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264721|gb|EGA48223.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323272232|gb|EGA55644.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|363551122|gb|EHL35442.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363551692|gb|EHL36006.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363576763|gb|EHL60591.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|366056487|gb|EHN20805.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366057842|gb|EHN22142.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366062464|gb|EHN26696.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366070621|gb|EHN34729.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366074105|gb|EHN38169.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366082967|gb|EHN46896.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366829723|gb|EHN56599.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372206610|gb|EHP20114.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
Length = 473
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 137/449 (30%), Positives = 239/449 (53%), Gaps = 45/449 (10%)
Query: 20 QGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYE 79
Q + ++ I +F + + S +++ +K + + ++ + N+ YE
Sbjct: 63 QTALAEKGIPLLFHEVADFSASIET---------------VKNVCRQHDVSHLFYNYQYE 107
Query: 80 PQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN 139
RD ++K L + C+ F D VI ++ + Y +F+ ++ W++++K +
Sbjct: 108 FNERQRDAAVEKTLPSVICEGFD--DSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 165
Query: 140 --KCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
C P + S+ L +SLN + + + +
Sbjct: 166 IPPCV----PAPKIRVSGALSTPL------TPVSLN---YPQQAFDAALFPVEENAVIAQ 212
Query: 198 LNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L F + Y R++P+++GTS LS L G +S R+ + + ++ D
Sbjct: 213 LRQFCAQGADEYESRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGPG 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WL++LIWR+FY+ ++ YP + ++ F + + W+ +++ +F W KG TGYP+
Sbjct: 271 SVWLNELIWREFYRHLMIWYPALCKHQPFIRWTKRVAWQENSH---DFQAWQKGETGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN++G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+
Sbjct: 328 VDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWA 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNP Q ++FD G FIR++LP L + K IH PW+ + EKAG
Sbjct: 388 ASTGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWA----EKAG 443
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIK 464
++L +YP+PI+EH ++ L Y +
Sbjct: 444 VVL--DYPRPIVEHKQARIATLSAYEAAR 470
>gi|432615535|ref|ZP_19851663.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE75]
gi|431156919|gb|ELE57580.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE75]
Length = 472
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 MSPRQAEFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD ++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQAERALRNVVCEGFD--DGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S++ + W +G TGYP++
Sbjct: 271 IWLNELIWREFYRHLITYYPSLCKHRPFIVWTDRVQWQSNS---AHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|443316924|ref|ZP_21046350.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
gi|442783454|gb|ELR93368.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
Length = 478
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 144/469 (30%), Positives = 231/469 (49%), Gaps = 25/469 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+V VF D IL + + R+ ++ + L +L+I ++ +
Sbjct: 30 QVTGVFCLDPGIL----HRDDVAPVRVAYLMNCLAALQGRYAAAGGELLILQGSPAQVLP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKF-FSYKDQVIFEKNEILNKTGK 120
L + + A+ N D EP A RD + K G + ++ DQ++ +L TG
Sbjct: 86 NLAQVIAVTALYWNRDVEPYARDRDTHVAAACKEQGIEIKTTFWDQLLCAPGAVLTGTGS 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
PY+++ + + W + K+ + P + + + + S DLGF S
Sbjct: 146 PYTVYGPFWRNWCTQAKAPP---ELEPTNFEGLSPAERERANAAGAMPLPSTTDLGF--S 200
Query: 181 NLSSLGIKTGASGAKILLNNFI---KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237
L ++ G A L F + I Y+ RN+P GTS LS L+FG I IR +
Sbjct: 201 WDQPLPVEPGEGAALQQLEAFCSQDQAIGAYDEQRNFPFALGTSRLSAALKFGVIGIRTV 260
Query: 238 VKLIFKFIKKHYKTDC-IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ +++ + TW +L WR+FYQ ++Y +P + ++ ++ N W +D
Sbjct: 261 WAAAAEAMERCRSDETRQSVTTWQQELAWREFYQHVMYFFPQLATGPYRPQWQNFPWVND 320
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
+ F WC G TGYP++D+A+ QLN +G+MHNR RM+ ASFL K++ I+W+WGE YF
Sbjct: 321 ---EAQFQAWCAGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEKYF 377
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
L D DL++NNG WQWSASSG +P RIFNP Q+KKFD + +IR++LP++ L
Sbjct: 378 MQTLVDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDPEAEYIRQWLPEIRHLD 436
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ S S ++ G YP PI++H + ++Y K
Sbjct: 437 TGELVSG-VLSPLSRQQTG------YPAPIVDHKRQQALFKEKYKGQKG 478
>gi|432717737|ref|ZP_19952735.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE9]
gi|431266356|gb|ELF57917.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE9]
Length = 472
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ E I + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 VSPRQAELINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQVERTLRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGELSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S++ + W +G TGYP++
Sbjct: 271 IWLNELIWREFYRHLITYYPSLCKHRPFIVWTDRVQWQSNS---AHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLN++G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNTTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|84386253|ref|ZP_00989282.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
gi|84379023|gb|EAP95877.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
Length = 481
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 238/411 (57%), Gaps = 23/411 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLN-----IDAVMINHDYEPQ 81
+ + I++ + +L L + DL+ + +++ ++L +DA I + EP+
Sbjct: 48 KADLIYRHLQQLESQLAEFGIDLL---HLKARDFDDQAVQLTHLYKQLDATCIYANSEPE 104
Query: 82 AIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKC 141
+ ++L K L G K I +LNK G+ + +F+ ++ W+++V+
Sbjct: 105 --VDEQLRDKRLIASGIKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQVKGI 162
Query: 142 YLQSYPV---KSYLNNLVHSSKLHKIINNNIISLN---DLGFCKSNLSSLGIKTGASGAK 195
PV K L + + ++++ +L D F + S +
Sbjct: 163 ICSPAPVAPAKLQQTPLQQTQRPQSQLSDDSKALRISADYDFDFPRVDSSRWPLSQDVLE 222
Query: 196 ILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL-VKLIFKFIKKHYKTDC 253
++ NF+ K+ +Y+ R+ PSI GTS LS +L G +S R L ++LI + + T
Sbjct: 223 SVIPNFLSNKVNDYSRLRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQ- 281
Query: 254 IGYFTWLSQLIWRDFYQMILYCYPNVVNKS-FKKEYDNILWESDNYAKKNFLNWCKGYTG 312
+ F+WL++LIWRDFY+ +++ +P +V + F+++Y+ + W DN +F WC+G TG
Sbjct: 282 LPAFSWLNELIWRDFYKHLMFHHPKLVKGANFQQKYNGLDWYHDN---PSFKAWCEGKTG 338
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
YPL+D+A+ QL +G+MHNRLRMV ASFL K++ I+W+WGE +F + L D D ++NNG W
Sbjct: 339 YPLVDAAMRQLVETGWMHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGW 398
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
QW++S+GC +QP+FRIFNPI QS+KFD +GIFIRKY+P+L + +K++H P
Sbjct: 399 QWASSTGCDAQPYFRIFNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFP 449
>gi|409396219|ref|ZP_11247226.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. Chol1]
gi|409119168|gb|EKM95554.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. Chol1]
Length = 476
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 137/447 (30%), Positives = 234/447 (52%), Gaps = 27/447 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYA----IASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F +++ EL+ L+ + L+IR+A ++++ + + AV N DY
Sbjct: 48 KVDFWLRNLAELATELRRLNVPLLIRHADDWQTVPDALRQVCHEHAVRAVHFNDDYGVDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD + + L G Y D+++F +L ++G + +F ++K C
Sbjct: 108 QRRDHAVSEALHQDGIVTQRYLDRLLFAPGTLLTQSGGYFKVFGQFRKS---------CL 158
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNI-ISLNDLGFCKSNLSSLGIKTGASGAKILLNNF 201
+ + I ++ + +++ S L +L G + A L F
Sbjct: 159 ARLQLSLPPCLPPLAPQAPLDIASDPLPTAVSGFAAPASTLQAL-WPAGEAHAYQRLTTF 217
Query: 202 I-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
I + + +Y R+ P+ GTS LS +L G ISIR+ + + + G TW+
Sbjct: 218 IDEALDDYQQRRDLPAEPGTSQLSPYLAAGVISIRQCLHAALAGNRGELDSGSSGAVTWI 277
Query: 261 SQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSA 319
++L+WR+FY IL YP V ++++F+ E + + W +A + W +G TG+P++D+A
Sbjct: 278 NELLWREFYTHILVGYPRVSMHRAFRAETEALPW---RHAPDDLAAWQEGRTGFPIVDAA 334
Query: 320 IIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSG 379
+ QL +G+MHNRLRM+TA FL KN+ I+W+ GE +F +L D DLA+NNG WQWSAS+G
Sbjct: 335 MRQLRETGWMHNRLRMITAMFLSKNLLIDWREGERWFMRQLIDGDLAANNGGWQWSASTG 394
Query: 380 CSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILG 439
+ P+FR+FNPI QS++FD F+R +LP+L LS + IH+P G+
Sbjct: 395 TDAVPYFRLFNPISQSQRFDPDVRFLRHWLPELQGLSRRDIHNP-------SALGGLFAP 447
Query: 440 KNYPKPILEHSLSKKNILKRYNFIKNI 466
NYP PI++ S+ +L + + +
Sbjct: 448 ANYPTPIVDLGESRARVLAAFRDLPQV 474
>gi|239501100|ref|ZP_04660410.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB900]
gi|421677885|ref|ZP_16117774.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC111]
gi|410392766|gb|EKP45123.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC111]
Length = 480
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 160/451 (35%), Positives = 247/451 (54%), Gaps = 32/451 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I F + + L L L+I+ KEI + K NI+ V N +
Sbjct: 51 KISFYLRQLRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK ++ L G + F + D+ IF I N++ +PY +FS ++K K+ ++
Sbjct: 111 LKRDKTVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGL- 169
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG--FCKSNLSSLGI---KTGASGAKIL 197
Q YPV + N + + I L+++ FC S+LS G A
Sbjct: 170 PQCYPVPNKQNEVPLD-----FLQGKNIDLDEIEKLFC-SSLSKEQQDLWPVGEQYALDQ 223
Query: 198 LNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L+ FI++ + +Y + R++P I GTS LS +L G +SIR+ ++ +F+ ++ G
Sbjct: 224 LDQFIEESVCHYKLERDFPHIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQ 283
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TWL +L+WR+FYQ IL+ +P+V FKK+ I W N+ ++ W G TG P+
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKW---NHNPEHLTAWQTGQTGIPI 340
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW
Sbjct: 341 VDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWC 400
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIF+PI QSKKFD +G +IR+++ +L+ L NK IH P+ + +
Sbjct: 401 ASTGTDAVPYFRIFHPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYSSKT------- 453
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
LG NYPKPI++ K+ LK KNI
Sbjct: 454 -DLGLNYPKPIVD---LKETRLKAIKTFKNI 480
>gi|416623116|ref|ZP_11797254.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323193139|gb|EFZ78358.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
Length = 427
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 137/449 (30%), Positives = 239/449 (53%), Gaps = 45/449 (10%)
Query: 20 QGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYE 79
Q + ++ I +F + + S +++ +K + + ++ + N+ YE
Sbjct: 17 QTALAEKGIPLLFHEVADFSASIET---------------VKNVCRQHDVSHLFYNYQYE 61
Query: 80 PQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN 139
RD ++K L + C+ F D VI ++ + Y +F+ ++ W++++K +
Sbjct: 62 FNERQRDAAVEKTLPSVICEGFD--DSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119
Query: 140 --KCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
C P + S+ L +SLN + + + +
Sbjct: 120 IPPCV----PAPKIRVSGALSTPL------TPVSLN---YPQQAFDAALFPVEENAVIAQ 166
Query: 198 LNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L F + Y R++P+++GTS LS L G +S R+ + + ++ D
Sbjct: 167 LRQFCAQGADEYESRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGPG 224
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WL++LIWR+FY+ ++ YP + ++ F + + W+ +++ +F W KG TGYP+
Sbjct: 225 SVWLNELIWREFYRHLMIWYPALCKHQPFIRWTKRVAWQENSH---DFQAWQKGETGYPI 281
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN++G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+
Sbjct: 282 VDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWA 341
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNP Q ++FD G FIR++LP L + K IH PW+ + EKAG
Sbjct: 342 ASTGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWA----EKAG 397
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIK 464
++L +YP+PI+EH ++ L Y +
Sbjct: 398 VVL--DYPRPIVEHKQARIATLSAYEAAR 424
>gi|428226857|ref|YP_007110954.1| deoxyribodipyrimidine photo-lyase type I [Geitlerinema sp. PCC
7407]
gi|427986758|gb|AFY67902.1| deoxyribodipyrimidine photo-lyase type I [Geitlerinema sp. PCC
7407]
Length = 481
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 148/469 (31%), Positives = 233/469 (49%), Gaps = 48/469 (10%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF D +IL+ + + R+ ++ + L S+L+I + I
Sbjct: 31 VVGVFCLDPSILE----RDDVAPARVTYMVGCLAALQEAYARTGSELLILKGNPVQAIPA 86
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L+ AV N D EP A RD+ ++ LK G + DQ++ EI G PY
Sbjct: 87 LAAALSAQAVFWNWDVEPYAQARDEQVRHALKERGIGLHTSWDQLLHAPGEIRTNAGDPY 146
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSK--LHKIINNNIISLNDLGFCKS 180
++++ + K W ++ K+ P S + L S + + S DLGF
Sbjct: 147 TVYTPFWKNWQKQPKAAPL-----PTLSDVQGLSDSEREAATAAGAIALPSAQDLGFGWD 201
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKN-----YNINRNYPSINGTSYLSIHLRFGTISIR 235
L + G + A+ L F + Y+ R++P+ GTS LS L+FG I IR
Sbjct: 202 G--DLVLAPGEAAARDRLEAFCESSTREGLWVYDDQRDFPAEPGTSQLSAALKFGAIGIR 259
Query: 236 KLVKLIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWE 294
+ + + + TW +L WR+FYQ +Y +P + +++E+ + WE
Sbjct: 260 TVWAAADAALSRSRSEESTNNIRTWQQELAWREFYQHAMYFFPRLAEGPYRREWQDFPWE 319
Query: 295 SDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN 354
+ + F WC+G TGYP++D+A+ QLN G+MHNR RM+ ASFL+K++ I+W+WGE
Sbjct: 320 N---REDRFQAWCEGRTGYPIVDAAMRQLNEIGWMHNRCRMIVASFLVKDLIIDWRWGEK 376
Query: 355 YFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSK 414
YF KL D DL++NNG WQWSASSG +P RIFNP Q++K+D ++IR++LP+L
Sbjct: 377 YFMQKLVDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDPDAVYIRQWLPELK- 434
Query: 415 LSNKYIHSPWKASSYKLEKAGIILGK---------NYPKPILEHSLSKK 454
L+ A ++ GK YP PI++H + ++
Sbjct: 435 ---------------SLDAADLVSGKILPLVRDRCGYPAPIVDHKVQQQ 468
>gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
Length = 477
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 236/451 (52%), Gaps = 25/451 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V V++ D ++ P ++ + R+ F+ +S+IEL + S L+I + +
Sbjct: 32 VTGVYVLDPALIHPPQALPPMAPARLWFLLESLIELQQRWRAAGSRLLILEGDPVQMLPP 91
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L +L+ +AV+ N D EP + RD+ + K L+ G + DQ++ + G PY
Sbjct: 92 LAERLSAEAVVWNRDVEPYSRERDRQVAKRLQADGRQVVVDWDQLLIAPELLKTGAGDPY 151
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISL-NDLGFCKSN 181
++ + + W KV++ + P + LV + + +L +D GF +
Sbjct: 152 RVYGPFLRNWRGKVQAQQPTTIEAP-----SGLVDLDSSLVPEGDPLAALRHDHGFQGTE 206
Query: 182 LSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ + G S A L F + Y +RN+P++ GTSYLS L GT+S R+
Sbjct: 207 ICP--CRPGESAALEQLTCFADGALSAYEPDRNFPNVVGTSYLSAALSVGTLSPRQ-AWC 263
Query: 241 IFKFIKKHYKTD--CIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ + H ++D W +L WR+FYQ L+ +P + + +++++ WE++
Sbjct: 264 AAQQGRDHARSDEQRTAIAVWEQELGWREFYQQALFHFPELADGPYREQWRRFPWENN-- 321
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ F +W G TG P+ID+A+ QLN SG+MHNR RM+ ASFL+K++ +W+WGE F
Sbjct: 322 -EAWFSSWRDGMTGMPIIDAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWGERAFME 380
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
D DLA+NNG WQWSASSG +P RIFNP Q+ KFD G +IR++LP+L ++ K
Sbjct: 381 LEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQATKFDADGDYIRRWLPELRHVNTK 439
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
+ + + G + + YP+P++ H
Sbjct: 440 DLLT---------GEIGGLERRGYPEPLINH 461
>gi|448726891|ref|ZP_21709278.1| deoxyribodipyrimidine photolyase [Halococcus morrhuae DSM 1307]
gi|445793190|gb|EMA43777.1| deoxyribodipyrimidine photolyase [Halococcus morrhuae DSM 1307]
Length = 465
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 131/464 (28%), Positives = 236/464 (50%), Gaps = 28/464 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF+FD ++L R+ F+ ++ L + + SDL ++ +
Sbjct: 27 VLPVFVFDPDVLQ------YASPPRVAFLLAALDSLQESYRERGSDLYTAEGDPAEVLPG 80
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ + +D + NHDY + RD+ ++ L G ++ D + E I G PY
Sbjct: 81 IADEHGVDELFWNHDYTGLSQERDERVRAALDDAGIAHEAFHDALHHEPGTITTNDGDPY 140
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+FS++ KW+++ K+ + YP + L I ++ ++++LGF + +
Sbjct: 141 SVFSYFGDKWLDREKA-----EPYPDPD-------GNALADIDRESLPTIHELGFDEPSA 188
Query: 183 SSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLI 241
+ T A A+ L+ F I Y+ R YP+ GTS LS +GTI +R++ + +
Sbjct: 189 NIPDASTEA--ARDRLDTFCDDGITEYDEGREYPADEGTSRLSQDRNYGTIGVREVTERV 246
Query: 242 FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKK 301
+ + + + G + +L + +F+ +L+ P +V +++K + I W D+
Sbjct: 247 DEAREAADEDERDGIDAYRRELAFGEFFAHVLFYNPELVVENYKSYENPIDWRDDD---G 303
Query: 302 NFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLN 361
W +G TGYP++D+ + QL YMHNR+RM+ ASFL K++ ++W+ G +F +L
Sbjct: 304 ELRAWKEGTTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLMLDWREGYTHFRERLV 363
Query: 362 DFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIH 421
D D A++NGNWQW+AS+G +QP+FR+FNP+ Q +K+D +I+ Y+P+L + IH
Sbjct: 364 DHDTANDNGNWQWAASTGTDAQPYFRVFNPMTQGEKYDPDADYIKTYVPELDDADPETIH 423
Query: 422 SPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
S + + E A +YP PI EH ++ + + +
Sbjct: 424 SWNELDDEERESA----APDYPAPICEHGERREEAIAMFERARG 463
>gi|193077986|gb|ABO12900.2| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
[Acinetobacter baumannii ATCC 17978]
Length = 480
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 160/451 (35%), Positives = 247/451 (54%), Gaps = 32/451 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I F + + L L L+I+ KEI + K NI+ V N +
Sbjct: 51 KIGFYLRQLRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK ++ L G + F + D+ IF I N++ +PY +FS ++K K+ ++
Sbjct: 111 LKRDKTVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGL- 169
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG--FCKSNLSSLGI---KTGASGAKIL 197
Q YPV + N + + I L+++ FC S+LS G A
Sbjct: 170 PQCYPVPNKQNEVPLD-----FLQGKNIDLDEIEKLFC-SSLSKEQQDLWPVGEQYALEQ 223
Query: 198 LNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L+ FI++ + +Y + R++P+I TS LS +L G +SIR+ ++ +F+ ++ G
Sbjct: 224 LDQFIEESVCHYKVERDFPNIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQ 283
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TWL +L+WR+FYQ IL+ +P+V FKK+ I W N+ ++ W G TG P+
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKW---NHNPEHLTAWQMGQTGIPI 340
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW
Sbjct: 341 VDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWC 400
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNPI QSKKFD +G +IR+++ +L+ L NK IH P+ + +
Sbjct: 401 ASTGTDAVPYFRIFNPITQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYSSKT------- 453
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
LG NYPKPI++ K+ LK KNI
Sbjct: 454 -DLGLNYPKPIVD---LKETRLKAIETFKNI 480
>gi|170681516|ref|YP_001742812.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5]
gi|300937834|ref|ZP_07152629.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1]
gi|432679123|ref|ZP_19914523.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE143]
gi|170519234|gb|ACB17412.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5]
gi|300457153|gb|EFK20646.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1]
gi|431224521|gb|ELF21742.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE143]
Length = 472
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 240/445 (53%), Gaps = 31/445 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDY 78
+ R+ EFI + L I L L+ +A + + +K++ + + + N+ Y
Sbjct: 47 MSPRQAEFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD ++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVQAERALRNVVCEGFD--DGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I I+LN + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIDPAPSITLN---YPRQPFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ YP++ ++ F D + W+S++ + W +G TGYP++
Sbjct: 271 IWLNELIWREFYRHLITYYPSLCKHRPFIVWTDRVQWQSNS---AHLKAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD +G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYN 461
L +YP+PI++H ++ L Y
Sbjct: 444 TL--DYPQPIVDHKEARLRTLAAYE 466
>gi|431927515|ref|YP_007240549.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri RCH2]
gi|431825802|gb|AGA86919.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri RCH2]
Length = 476
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 239/442 (54%), Gaps = 29/442 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+++F ++++ELS L+ + L+IR + + KL +L++ + N +Y
Sbjct: 48 KVDFWLRNLVELSAQLRALNVPLLIREVDDWQSVPAALLKLCQELDVHGLHYNEEYGVNE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
RD+ + L G + DQV+F +L ++G + +FS ++K+ + ++ +
Sbjct: 108 RRRDRTVAATLGACGVLVRGHVDQVLFAPGTVLTQSGGHFKVFSQFRKQCLSRLAVSLPP 167
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN--LSSLGIKTGASGAKILLNN 200
P +++ I ++ + GF + L +L G + A+ L
Sbjct: 168 CVGVP----------AAQAPLPIASDPVPTAVAGFPRPTDYLRAL-WPAGEAFAQRRLAL 216
Query: 201 FIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTW 259
F++ + Y+ R+ P+ GTS LS +L G IS+R+ + + + + G TW
Sbjct: 217 FVEDDLDLYHERRDLPAEPGTSQLSAYLAAGVISVRQCLHAALGYNQGELDSGSTGATTW 276
Query: 260 LSQLIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+++L+WR+FY+ +L +P + ++++F+ E D + W +A W +G TG+P++D+
Sbjct: 277 INELLWREFYKHVLDGHPRLSMHRAFRSETDALPW---RHAPYELEAWQQGRTGFPIVDA 333
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
A+ QL +G+MHNRLRMV A FL KN+ I+W+ GE +F L D DLA+NNG WQWSAS+
Sbjct: 334 AMRQLQETGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSAST 393
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G S P+FR+FNPI QS++FD G F+R++LP+L L + IH P S+++ +
Sbjct: 394 GTDSVPYFRLFNPISQSQRFDPSGQFLRRWLPELQHLDKRDIHDP---SAHR----SLFG 446
Query: 439 GKNYPKPILEHSLSKKNILKRY 460
YP PI++ S+ L +
Sbjct: 447 VTEYPAPIVDLGASRARALATF 468
>gi|445490506|ref|ZP_21459219.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
AA-014]
gi|444765769|gb|ELW90058.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
AA-014]
Length = 480
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 160/451 (35%), Positives = 246/451 (54%), Gaps = 32/451 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVI----KLNIDAVMINHDYEPQA 82
+I F + + L L L+I+ KEI + K NI+ V N +
Sbjct: 51 KISFYLRQLRTLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNE 110
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCY 142
+ RDK ++ L G + F + D+ IF I N++ +PY +FS ++K K+ ++
Sbjct: 111 LKRDKTVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGL- 169
Query: 143 LQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG--FCKSNLSSLGI---KTGASGAKIL 197
Q YPV + N + + I L+++ FC S+LS G A
Sbjct: 170 PQCYPVPNKQNEVPLD-----FLQGKNIDLDEIEKLFC-SSLSKEQQDLWPVGEQYALEQ 223
Query: 198 LNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L+ FI++ + +Y + R++P I TS LS +L G +SIR+ ++ +F+ ++ G
Sbjct: 224 LDQFIEESVFHYKVERDFPHIQATSKLSSYLNIGILSIRQCLQALFRNQHGNFHLVNEGQ 283
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
TWL +L+WR+FYQ IL+ +P+V FKK+ I W N+ ++ W G TG P+
Sbjct: 284 QTWLDELLWREFYQYILFDFPHVSKHIPFKKDTQKIKW---NHNPEHLTAWQTGQTGIPI 340
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + QL +G+MHNR+RM+TA FL KN+ I+W+ GE +F L D DLA+NNG WQW
Sbjct: 341 VDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWC 400
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+G + P+FRIFNPI QSKKFD +G +IR+++ +L+ L NK IH P+ + +
Sbjct: 401 ASTGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYSSKT------- 453
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
LG NYPKPI++ K+ LK KNI
Sbjct: 454 -DLGLNYPKPIVD---LKETRLKAIETFKNI 480
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,327,584,675
Number of Sequences: 23463169
Number of extensions: 313083541
Number of successful extensions: 805491
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4040
Number of HSP's successfully gapped in prelim test: 252
Number of HSP's that attempted gapping in prelim test: 790743
Number of HSP's gapped (non-prelim): 5442
length of query: 470
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 324
effective length of database: 8,933,572,693
effective search space: 2894477552532
effective search space used: 2894477552532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)