BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14494
(470 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 288 bits (736), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 244/466 (52%), Gaps = 26/466 (5%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
+ VF D IL + R+ ++ + L + Q S+L++ A + + K
Sbjct: 45 IVGVFCLDNKIL----QAEDMAPARVAYLLGCLQSLQDHYQRLGSELLVFQADPVQLLPK 100
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
L L V D EP A RD + + L+ G + DQ++ E+L + G PY
Sbjct: 101 LANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERGLAIATEWDQLMHHPGEVLTQAGSPY 160
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSK--LHKIINNNIISLNDLGFCKS 180
++++ + K W + K++ P L L + K L + I L DLGF
Sbjct: 161 TVYTPFWKNWSQLPKTSPV-----PTPKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWD 215
Query: 181 NLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVK 239
L + G A+ L+ F+ ++ Y NRN+P+++GTS LS L+FG IS R L +
Sbjct: 216 Q--PLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPALDGTSQLSAALKFGVISPRTLWQ 273
Query: 240 LIFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ ++ + TW +L WR+FYQ LY +P + ++ + WE +
Sbjct: 274 TTLEAWEQSRSEEARASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQEFPWEEN-- 331
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
+ +F WC+G TGYP+ID+A+ QLN +G+MHNR RM+ ASFLIK++ +NW+WGE YF
Sbjct: 332 -QDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQ 390
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D DLA+NNG WQWSASSG +P RIFNP Q++KFD +G +IR +LPQL++
Sbjct: 391 TLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPHTQAQKFDPEGEYIRTWLPQLARFDTG 449
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ + KL G NYP+PI++H+ ++ +RY +K
Sbjct: 450 DL------LTGKL-TPGSRRSVNYPEPIVDHNQQQREFKRRYQLVK 488
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 272 bits (695), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 144/445 (32%), Positives = 241/445 (54%), Gaps = 19/445 (4%)
Query: 14 LDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL-NIDAV 72
LDP + +E ++ F+++++ L+ DL I + KL+ IDAV
Sbjct: 44 LDPKTAS--VEPVHHDYFFQTVMQFKQMLKTNGGDLYIITGTIEGALSKLLQAFPEIDAV 101
Query: 73 MINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKW 132
N D +RD+ + L F++++D + E +++L K G PY +F+ Y K W
Sbjct: 102 YANDDRVGDGRLRDEAAEHFLAKQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAW 161
Query: 133 IEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGAS 192
++ K ++ + ++ + + + NN+I C + S++G +
Sbjct: 162 AKERKRTPAVIKRDVLLGSVHKGTAPDREAETLFNNLIKK-----CSYDWSAIGEEHAIK 216
Query: 193 GAKILLNNFIKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTD 252
++ K++ Y NR++PSI GTS LS +++ G +S R + I Y +
Sbjct: 217 RLQMFTK---KRLSGYKANRDFPSITGTSRLSPYIKTGAVSSRSIYYHILNAEADSYSAE 273
Query: 253 CIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTG 312
T+L +L WRDFY+M+ + P+ ++ + Y + W D + + +W +G TG
Sbjct: 274 -----TFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHD---QDDLTSWKRGETG 325
Query: 313 YPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNW 372
+P++D+ + QL + G+MHNRLRM+TASFL K++ I+W+ GE YF L D+D +SN G W
Sbjct: 326 FPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGW 385
Query: 373 QWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLE 432
QW+AS G + P+FRIFNP+ QSK+FD G +IR Y+P+L+ + + YIH PWK S +
Sbjct: 386 QWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKMSEEEQV 445
Query: 433 KAGIILGKNYPKPILEHSLSKKNIL 457
K L ++YP PI++HS +K L
Sbjct: 446 KYKCRLDEDYPLPIVDHSKQRKKAL 470
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 234/469 (49%), Gaps = 32/469 (6%)
Query: 3 VYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKK 62
V VF FD +L R+ F+ ++ L ++ SDLI+R+ + +
Sbjct: 37 VAAVFCFDDEVL------AHAAPPRVAFMLDALAALRERYRDLGSDLIVRHGDPAAVLPA 90
Query: 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPY 122
+ L+ V+ NHDY A RD ++ L G + D V EI G PY
Sbjct: 91 VANDLDATRVVWNHDYSGLATDRDAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPY 150
Query: 123 SIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL 182
S+++++ +KW ++ K+ + L +S L S+ +LGF +
Sbjct: 151 SVYTYFWRKWQDREKNPPAPEPEPADLAADTALADTSPL--------PSVQELGFAEPEA 202
Query: 183 SSLGIKTGASGAKILLNNFIK--KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
+ G + A+ LL+ F + I Y R+YP TS LS HL+FGTI IR + +
Sbjct: 203 AV--PDAGTAAARSLLDAFRESGDIYRYEDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEA 260
Query: 241 IFKFIKKHYKTDC----IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
+ K TD + F + QL WR+FY +LY NVV+++FK I W D
Sbjct: 261 A-RAAKSDADTDDERENVAAF--IGQLAWREFYAQVLYFNQNVVSENFKAYEHPIEWRDD 317
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
A W G TGYP++D+ + QL + YMHNR+RM+ A+FL K++ ++W+ G ++F
Sbjct: 318 PAA---LQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVAAFLTKDLLVDWRAGYDWF 374
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
KL D D A++NG WQW+AS+G +QP+FR+FNP+ Q +++D +I +++P+L +
Sbjct: 375 REKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGERYDPDADYITEFVPELRDVP 434
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465
IHS W S + YP PI++HS +++ + + +
Sbjct: 435 ADAIHS-WHELSLSERRR---HAPEYPDPIVDHSQRREDAIAMFERARG 479
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 259 bits (661), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 243/448 (54%), Gaps = 31/448 (6%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYA---IASKEIKKLVIKLN-IDAVMINHDY 78
+ R+ E I + L I L L+ R +AS EI K V N + + N+ Y
Sbjct: 47 MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQY 106
Query: 79 EPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS 138
E RD +++ L+ + C+ F D VI ++ + Y +F+ ++ W+++++
Sbjct: 107 EVNERARDVEVERALRNVVCEGFD--DSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLRE 164
Query: 139 NKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILL 198
+ P V SS I + I+LN + + + + A L
Sbjct: 165 GMPECVAAPK-------VRSSG--SIEPSPSITLN---YPRQSFDTAHFPVEEKAAIAQL 212
Query: 199 NNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
F + Y R++P++ GTS LS L G +S R+ + + ++ D
Sbjct: 213 RQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLA--EQPQALDGGAGS 270
Query: 258 TWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
WL++LIWR+FY+ ++ +P++ ++ F D + W+S+ + W +G TGYP++
Sbjct: 271 VWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN---PAHLQAWQEGKTGYPIV 327
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+NNG WQW+A
Sbjct: 328 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 387
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
S+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK + +KAG+
Sbjct: 388 STGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGV 443
Query: 437 ILGKNYPKPILEHSLSKKNILKRYNFIK 464
L +YP+PI+EH ++ L Y +
Sbjct: 444 TL--DYPQPIVEHKEARVQTLAAYEAAR 469
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 239/450 (53%), Gaps = 39/450 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQA 82
+ + I++ + EL L + L + + A+ + +L LN V+ N DYE
Sbjct: 48 QADLIWRRLAELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDE 107
Query: 83 IIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI----EKVKS 138
RD+L ++ L G + ++ D+ + + K G+ + +F+ +++ W+ V
Sbjct: 108 QQRDQLAQQLLSEQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIG 167
Query: 139 NKCYLQSYPVKSYLNNLV-HSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKIL 197
+ + V S L LV H + F + S +
Sbjct: 168 KNRPVALWNVPSALAELVWHPEQ---------------AFDYPRIDSTPWAADFETVRAQ 212
Query: 198 LNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
L +F + ++++Y+ R++P+ GTS LS +L G +S R+ V ++ ++ G
Sbjct: 213 LRDFCRERVQDYHQARDFPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSE--GA 270
Query: 257 FTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
WLS+LIWR+FYQ ++ PN+ ++ F + + W +DN + F WC+G TGYP+
Sbjct: 271 QVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDN---EKFQLWCEGKTGYPI 327
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+A+ QLN +G+MHNRLRM+ ASFL K++ I+W+WGE YF ++L D D A+NNG WQW
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
AS+GC QP+FRIFNP+ Q +KFD G FIR+++P+L +S+ YIH PW +Y +
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPW---TYPAVNSV 444
Query: 436 IILGKNYPKPILEHSLSKKNILKRYNFIKN 465
+ YP +++H ++ L+ Y K
Sbjct: 445 L-----YPARLVDHKQEREVTLRLYKTAKG 469
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2
Length = 473
Score = 248 bits (633), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 133/411 (32%), Positives = 226/411 (54%), Gaps = 30/411 (7%)
Query: 58 KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
+ +K + + ++ + N+ YE RD ++K L + C+ F D VI ++
Sbjct: 86 ETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKTLPSVICEGFD--DSVILAPGAVMTG 143
Query: 118 TGKPYSIFSFYQKKWIEKVKSN--KCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDL 175
+ Y +F+ ++ W++++K + C P + S+ L +SLN
Sbjct: 144 NHEMYKVFTPFKNAWLKRLKEDIPPCV----PAPKIRVSGALSTPL------TPVSLN-- 191
Query: 176 GFCKSNLSSLGIKTGASGAKILLNNFIKK-IKNYNINRNYPSINGTSYLSIHLRFGTISI 234
+ + + + L F + Y + R++P+++GTS LS L G +S
Sbjct: 192 -YPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRLSASLATGGLSP 250
Query: 235 RKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVV-NKSFKKEYDNILW 293
R+ + + ++ D WL++LIWR+FY+ ++ YP + ++ F + + W
Sbjct: 251 RQCLHRLLA--EQPQALDGGPGSVWLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAW 308
Query: 294 ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGE 353
+ + + F W KG TGYP++D+A+ QLN++G+MHNRLRM+TASFL+K++ I+W+ GE
Sbjct: 309 QENPH---YFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGE 365
Query: 354 NYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
YF ++L D DLA+NNG WQW+AS+G + P+FRIFNP Q ++FD G FIR++LP L
Sbjct: 366 RYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALR 425
Query: 414 KLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ K IH PW+ + EKAG++L +YP+PI+EH ++ L Y +
Sbjct: 426 DIPGKAIHEPWRWA----EKAGVVL--DYPRPIVEHKQARIATLSAYEAAR 470
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/468 (30%), Positives = 232/468 (49%), Gaps = 24/468 (5%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
++ +F D IL + R+ ++ + EL Q S L++ I
Sbjct: 30 QLIGLFCLDPQIL----QSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L +L +AV N D EP RD + LK G + DQ++ ++IL+ +G P
Sbjct: 86 QLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNP 145
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSN 181
YS++ + K W + K + V L + + ++ + + +L LGF
Sbjct: 146 YSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQL---TAIAPLLLSELPTLKQLGFDWDG 202
Query: 182 LSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240
++ G + A L F + I +Y+ RN+P+ GTS LS L+FG I IR+ +
Sbjct: 203 --GFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWRA 260
Query: 241 IFKFIKKHYKTDCIGYF-TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYA 299
+ W +L WR+FYQ LY +P++ + ++ + WE+
Sbjct: 261 ASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENR--- 317
Query: 300 KKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359
+ F W + TGYP++D+A+ QL +G+MHNR M+ ASFL K++ I+W+ GE +F
Sbjct: 318 EALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDWRRGEQFFMQH 377
Query: 360 LNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKY 419
L D DLA+NNG WQWSASSG +P RIFNP Q+KKFD +I+++LP+L ++
Sbjct: 378 LVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDATATYIKRWLPEL-----RH 431
Query: 420 IHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
+H P S ++ G + YP PI+ H+L +K YN +K +
Sbjct: 432 VH-PKDLISGEITPIGR---RGYPAPIVNHNLRQKQFKALYNQLKAAI 475
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1
Length = 483
Score = 228 bits (582), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 245/459 (53%), Gaps = 38/459 (8%)
Query: 23 IEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE----IKKLVI---KLNIDAVMIN 75
+ ++I F++ +I L L + II Y S + I+ L+ K ++ + N
Sbjct: 47 VSKKKISFMYYHLISLQKELLKLN---IILYYHESTDFLNSIEYLIFFCKKHKVNNLFYN 103
Query: 76 HDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEK 135
++Y RD L+KK+L G + D ++F +I N+ + Y +F+F++KK I+
Sbjct: 104 YEYAINERYRDYLVKKKLSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQN 163
Query: 136 VKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAK 195
+ +N Q +PV S K + I ISL ++ N + G A
Sbjct: 164 LHNN--IPQCFPVPS-------KRKSDRDIFLTSISLKNVNL---NFNKNFFPVGEKEAI 211
Query: 196 ILLNNF-IKKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI 254
L NF I K +Y + R+YP ++ TS LS +L G IS R +K++ K K + +
Sbjct: 212 NRLKNFCIYKFNDYFLKRDYPFLDATSMLSPYLSAGIISSRYCLKVLLK-TKNSLPLNVL 270
Query: 255 GYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY---AKKNFLNWCKGYT 311
W Q++WR+FY +L +P + + + WE + + K+F W +G T
Sbjct: 271 LTSPWFDQILWREFYYHLLIGFPKI-----SRSESLVTWEKEIHWINNIKHFNAWKEGNT 325
Query: 312 GYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGN 371
G+P+ID+ + QLN G+MHNRLRM+T+SFL+KN+ INW+ GE +F + L D DLA NNG
Sbjct: 326 GFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNLLINWREGEEHFISNLIDGDLALNNGG 385
Query: 372 WQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKL 431
WQWSAS GC S P+ RIFNP+ QSK FD G FI+K++P+L + N +IH P + S K
Sbjct: 386 WQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKN 445
Query: 432 EKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNRN 470
K +YP PI+ +S S+K L + + L++N
Sbjct: 446 FKI------DYPNPIINYSESRKTSLSLFKQARLKLHKN 478
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 225 bits (573), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 148/476 (31%), Positives = 236/476 (49%), Gaps = 30/476 (6%)
Query: 5 CVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE----I 60
C+++ L+ I R++F+ +++ L +L++ L + KE I
Sbjct: 169 CLYVLSPEDLEAHLRAPI----RVDFMLRTLEVLKTDLEDLGIPLWVETVEKRKEVPTKI 224
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRD----KLIKKELKVIGCKFFSYKDQVIFEKNEILN 116
K+L+ + +YE + R+ KL+ + K D + + +
Sbjct: 225 KELMKSWGASHLFCAMEYEVDELRREAKLVKLLAEGEKGEKMAADVVHDTCVVMPGALQS 284
Query: 117 KTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLG 176
+G Y+++S + + WI+ ++ N L+ Y K N K + +I +
Sbjct: 285 GSGGQYAVYSPWFRAWIKHIEENPECLEIY-EKPGPNPPGTKEKHENLFACSIPEAPEGK 343
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIK----KIKNYNINRNYPSINGTSYLSIHLRFGTI 232
+ + + +G L K I Y RN P++ GTS LS+H GT+
Sbjct: 344 RLRDDEKARYHSLWPAGEHEALKRLEKFCDEAIGKYAERRNIPAMQGTSNLSVHFASGTL 403
Query: 233 SIRKLVKLIF-KFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV-VNKSFKKEYDN 290
S R ++ + K G W+S++ WRDFY+ +L +P V +NK FK Y N
Sbjct: 404 SARTAIRTARDRNNTKKLNGGNEGIQRWISEVAWRDFYKHVLVHWPYVCMNKPFKPTYSN 463
Query: 291 ILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWK 350
I W +Y +F W +G TG+P+ID+A+ Q+ S+GYMHNRLRM+ ASFL K++ ++W+
Sbjct: 464 IEW---SYNVDHFHAWTQGRTGFPIIDAAMRQVLSTGYMHNRLRMIVASFLAKDLLVDWR 520
Query: 351 WGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKY-- 408
GE YF L D D ASNNG W ++AS G QP+FR+FNP++QS+KFD G +IRK+
Sbjct: 521 MGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFRVFNPLLQSEKFDPDGDYIRKWVE 580
Query: 409 ----LPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
LP+L IH P+ S K++K G YP+PI+EHS ++ L Y
Sbjct: 581 ELRDLPELKGGKGGEIHDPYGRGSEKVKKKLEEKG--YPRPIVEHSGARDRALDAY 634
>sp|Q89AJ9|PHR_BUCBP Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=phrB PE=3 SV=1
Length = 478
Score = 215 bits (547), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 165/437 (37%), Positives = 230/437 (52%), Gaps = 46/437 (10%)
Query: 33 KSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKE 92
K I EL I Y+S Y ++ I + + ++ N +YE RDK+IKK+
Sbjct: 64 KKITELGIIFYYYES---TDYLESTNYIIEFCKIHKVTSIFFNLEYEFYERQRDKIIKKK 120
Query: 93 LKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYL 152
LK + D V+ I N GK Y FS+++ K I++++ N
Sbjct: 121 LKKNNIIINCFHDSVLITPGSIKNSYGKMYKKFSYFKYKCIKQLQLNI------------ 168
Query: 153 NNLVHSSKLHKIINNNIISLNDLGFC----KSNLSSLGIKTGASGAKIL---LNNFIKKI 205
S K N N+ L F + L G I+ L FIK
Sbjct: 169 -----PSCFPKPQNKNLHDHYSLDFTIPIFHTYLEKFDANIFPIGEDIVYEKLKFFIKYA 223
Query: 206 KN-YNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK--HYKTDCIGYFTWLSQ 262
N YN ++ +N TS LS HL G IS R+ V L+FK H +C W+++
Sbjct: 224 FNKYNFDQEIFELNSTSMLSAHLSIGVISPRQCVTLLFKEYPDIIHKLEEC----KWINE 279
Query: 263 LIWRDFYQMILYCYPNV-VNKSFKKEYDNILWESDNYAKKNFLN-WCKGYTGYPLIDSAI 320
L+WR+FYQ +LY YPN+ N+S + I W+++ Y +LN W +G TGYP+ID+ +
Sbjct: 280 LLWREFYQHLLYFYPNIGQNQSLYHWENRIKWDNNLY----YLNLWKQGNTGYPIIDAGM 335
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
QL G++ NRLRM+TASFL+KN+ I+W+ GE YF ++L D D ASNNGNWQW AS G
Sbjct: 336 RQLKQLGWISNRLRMITASFLVKNLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGT 395
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGK 440
S P+FRIFNP++QSKKFD FIRKY+P+LS +S IH+P + K I K
Sbjct: 396 DSMPYFRIFNPMLQSKKFDINAKFIRKYIPELSNVSTYNIHNPCDNN-----KTNKIHSK 450
Query: 441 NYPKPILEHSLSKKNIL 457
YP+PI+ + SKK L
Sbjct: 451 -YPQPIINYYHSKKKTL 466
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 212 bits (539), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 221/452 (48%), Gaps = 45/452 (9%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
EV +F+ D D + G + F+ + L L++ LI+R A+ E++
Sbjct: 29 EVVPLFVRD----DAVHRAGFDAPNPLAFLADCLAALDAGLRHRGGRLIVRRGEAATEVR 84
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVI--FEKNEILNKTG 119
++ + V I A R++ I++ L G + + D V+ ++ G
Sbjct: 85 RVAEETGAARVHIAAGVSRYAARREQRIREALADSGRELHVH-DAVVTALAPGRVVPTGG 143
Query: 120 KP-YSIFSFYQKKW-IEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
K +++F+ Y ++W E V+ Q+ P + + V S L
Sbjct: 144 KDHFAVFTPYFRRWEAEGVRGT----QTAPRTVRVPDGVASDPLPDRD------------ 187
Query: 178 CKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236
C NLS + G + L+ +++ + +Y + + + TS LS HL FGT+S +
Sbjct: 188 CVENLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGDATSRLSPHLHFGTVSAAE 247
Query: 237 LVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESD 296
LV + + +G ++ QL WRDF+ +L P+ ++ +D W SD
Sbjct: 248 LVH-------RAREKGGLGGEAFVRQLAWRDFHHQVLADRPDASWSDYRPRHDR--WRSD 298
Query: 297 NYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYF 356
W G TGYPL+D+A+ QL G+MHNR RM+ ASFL K + ++W+ G +F
Sbjct: 299 ---ADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLYVDWREGARHF 355
Query: 357 ANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLS 416
+ L D D+A+N NWQW A +G ++P R+ NP+IQ K+FD +G ++R ++P+L+++
Sbjct: 356 LDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDARGDYVRGWVPELAEVE 414
Query: 417 NKYIHSPWKASSYKLEKAGIILGKNYPKPILE 448
IH PWK L++AG+ +YP P+++
Sbjct: 415 GSAIHEPWKLQG--LDRAGL----DYPDPVVD 440
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 222/432 (51%), Gaps = 27/432 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRD 86
R F+ +++ +L L++ +LI+R ++ L+ L IDAV +H+ +
Sbjct: 54 RARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTA 113
Query: 87 KLIKKELKVIG-CKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQS 145
+ +++ G +Y D +I +E+ + +F+ ++K+ IEK + L+
Sbjct: 114 ESVQQLCDQHGIATHVAYGDTLIH-PDELPFEIADTPELFTDFRKE-IEKQCEARSPLEE 171
Query: 146 YPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGI---KTGASGAKILLNNFI 202
P++ +H + ++ +I +L LG L + G + A+ + +I
Sbjct: 172 -PIR------IHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYI 224
Query: 203 ---KKIKNYNINRN---YPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGY 256
+++ Y RN +P N +S S L G +S R + + ++ ++ K +
Sbjct: 225 WNEDRLRVYKETRNGMLHP--NDSSKFSPWLAQGCLSPRMIADHVRRYEEERVKNKSTYW 282
Query: 257 FTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316
+ +L+WRD+++ I + + ++ N+ W+SD ++ F W G TGYPL+
Sbjct: 283 M--IFELLWRDYFRWISRKHGATLFRAGGLRGVNVDWKSD---RELFRRWQDGTTGYPLV 337
Query: 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSA 376
D+ + +L ++GYM NR R ASFL KN+GI+W+WG +F ++L D+D+ASN GNW ++A
Sbjct: 338 DANMRELRTTGYMSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAA 397
Query: 377 SSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGI 436
G ++ FR FN QS+ +D QG + + +LP+L L IH PWK S + ++ G
Sbjct: 398 GVGNDAR-GFRFFNITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGA 456
Query: 437 ILGKNYPKPILE 448
LGK YP PI++
Sbjct: 457 TLGKEYPHPIVD 468
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 130/435 (29%), Positives = 225/435 (51%), Gaps = 18/435 (4%)
Query: 33 KSIIELSINLQNYDSDL-IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKK 91
+S+ LS +L+ SDL +I+ I + V+ NH Y+P +++RD +K+
Sbjct: 58 QSLAHLSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKE 117
Query: 92 ELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSY 151
+L G SY +++E EI + GKP++ F+ Y KK ++ S + + P +
Sbjct: 118 KLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDM--SIESVMLPPPWR-- 173
Query: 152 LNNLVHSSKLHKIINNNIISLNDLGFCKSN-LSSLGIKTGASGAKILLNNFI-KKIKNYN 209
L + +++ + + L + SN L + G S A LLN FI K++ +Y
Sbjct: 174 LMPITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYA 233
Query: 210 INRNYPSINGTSYLSIHLRFGTISIR------KLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
N N TS LS +L FG IS+R ++ ++I+ K + F L +
Sbjct: 234 KNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLF--LRGI 291
Query: 264 IWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
R++ + I + +P +S W++D F W +G TGYPL+D+ + +L
Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPWDAD---VDKFKAWRQGRTGYPLVDAGMREL 348
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
++G+MHNR+R++ +SF +K + + WKWG YF + L D DL + WQ+ + S
Sbjct: 349 WATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGH 408
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYP 443
R+ NP +Q K+D +G +IR++LP+L++L ++IH PW A L+ +G+ LG NY
Sbjct: 409 ELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYA 468
Query: 444 KPILEHSLSKKNILK 458
KPI++ +++ + K
Sbjct: 469 KPIVDIDTARELLAK 483
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 182 bits (461), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 123/423 (29%), Positives = 213/423 (50%), Gaps = 22/423 (5%)
Query: 34 SIIELSINLQNYDSDLIIRYAIAS-KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKE 92
S+ +L +L++ + LI + + S + +V + NH Y+P +++RD K
Sbjct: 66 SLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDV 125
Query: 93 LKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYL 152
L G S+ +++E E+ ++ G+P+S+F+ + ++ C Y +S L
Sbjct: 126 LTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWER---------CLSMPYDPESPL 176
Query: 153 --NNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYN 209
+ S + K + + ++ +D + L + G S L FI + Y+
Sbjct: 177 LPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYS 236
Query: 210 INRNYPSINGTSYLSIHLRFGTISIRKLVKLI-FKFIKKHYKTDCIGYFT---WLSQLIW 265
NR TS+LS HL FG +S+RK+ L+ K + + + G + +L +
Sbjct: 237 KNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGL 296
Query: 266 RDFYQMILYCYPNVVNKSFKKEYDNILWESD-NYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
R++ + I + +P + W D NY F W +G TGYPL+D+ + +L
Sbjct: 297 REYSRYISFNHPYSHERPLLGHLKFFPWAVDENY----FKAWRQGRTGYPLVDAGMRELW 352
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
++G++H+R+R+V +SF +K + + W+WG YF + L D DL S+ WQ+ + S+
Sbjct: 353 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSRE 412
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
F RI NP + KFD G ++R++LP+LS+L +IH PW A L+ AGI LG NYP
Sbjct: 413 FDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPL 472
Query: 445 PIL 447
PI+
Sbjct: 473 PIV 475
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/423 (28%), Positives = 201/423 (47%), Gaps = 17/423 (4%)
Query: 33 KSIIELSINLQNYDSDL-IIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKK 91
+S+ L +L+ S+L +I+ I V V+ NH Y+P +++RD +K+
Sbjct: 58 QSLAHLRQSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKE 117
Query: 92 ELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSY 151
+L G SY + K + KK ++ + P
Sbjct: 118 KLVERGISVQSYNGDLCMSPGRYTVKRANLLLVLILTGKKCLDMSVESVVL----PPPWR 173
Query: 152 LNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI-KKIKNYNI 210
L L + + + N+ + L + G S A +LN FI K++ +Y
Sbjct: 174 LMPLSAAETVWACSVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAK 233
Query: 211 NRNYPSINGTSYLSIHLRFGTISIRKLVK------LIFKFIKKHYKTDCIGYFTWLSQLI 264
N N TS LS +L FG IS+R++ + +I+ K + F L +
Sbjct: 234 NSKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLF--LRGIG 291
Query: 265 WRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLN 324
RD+ ++I + +P +S W++D F W +G TGYPL+D+ + +L
Sbjct: 292 LRDYSRIICFNFPFTHEQSLLSHLRFFPWDAD---VDKFKAWRQGRTGYPLVDAGMRELW 348
Query: 325 SSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQP 384
++G+MHNR+R++ +SF +K + + WKWG YF + L D DL + WQ+ + S
Sbjct: 349 ATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHE 408
Query: 385 FFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
R+ NP IQ K+D +G +IR++LP+L++L ++IH PW A L+ +G+ LG NY K
Sbjct: 409 LDRLDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAK 468
Query: 445 PIL 447
PI+
Sbjct: 469 PIV 471
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 134/477 (28%), Positives = 220/477 (46%), Gaps = 37/477 (7%)
Query: 3 VYCVFIFDKNILD-------PLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAI 55
+Y VF+ D + ++ P S+ + RI F+ +S+ +L +L+ S L++
Sbjct: 52 MYPVFVIDPHYMESDPSAFSPGSSRAGVN--RIRFLLESLKDLDSSLKKLGSRLLVFKGE 109
Query: 56 ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL 115
+ + + + + + + +D +P D +K G + FS +F I+
Sbjct: 110 PGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHII 169
Query: 116 NKTG--KPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLN 173
K G P S SF KV +S V SY ++L + + + + SL
Sbjct: 170 EKNGGKPPLSYQSFL------KVAGEPSCAKSELVMSY-SSLPPIGDIGNLGISEVPSLE 222
Query: 174 DLGFCKSNLSS-LGIKTGASGAKILLNNFIKK---IKNYNINRNYPSI---NGTSYLSIH 226
+LG+ + + G S A L I + N+ + PS T+ +S +
Sbjct: 223 ELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPY 282
Query: 227 LRFGTISIR---KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKS 283
L+FG +S R + ++ I+K +KKH + L QL+WR+F+ + PN
Sbjct: 283 LKFGCLSSRYFYQCLQNIYKDVKKHTSPP----VSLLGQLLWREFFYTTAFGTPNFDKMK 338
Query: 284 FKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK 343
+ I W D+ W G TGYP ID+ ++QL G+MH+ R A FL +
Sbjct: 339 GNRICKQIPWNEDHAM---LAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTR 395
Query: 344 -NMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQG 402
++ I+W+ G + F L D D A NNGNW W + S Q F RI++PI KK+D G
Sbjct: 396 GDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ-FNRIYSPISFGKKYDPDG 454
Query: 403 IFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKR 459
+IR +LP L + +YI+ PW A KA I+GK+YPKP++ H + K ++
Sbjct: 455 KYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRK 511
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/431 (26%), Positives = 213/431 (49%), Gaps = 27/431 (6%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRD 86
R F+ +S+ +L +L+ SDL++R + I LV +L I AV + + + ++ +
Sbjct: 57 RARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVE 116
Query: 87 KLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSY 146
+ ++ L + S+ + +++ +F+ ++K+ +E+ S
Sbjct: 117 RDLQAALAPLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQ-VER---------SA 166
Query: 147 PVKSYLNNLVHSSKLHKIINNNIISLNDLGF---CKSNLSSLGIKTG-ASGAKILLNNFI 202
+ L L + I L DLG + L K G SG L F
Sbjct: 167 AINPPLPAPAKLPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFW 226
Query: 203 KK--IKNYNINRNYPSINGTSY---LSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYF 257
+K +K+Y RN + G Y S L G +S R + + + + K K D +
Sbjct: 227 QKSLLKSYKQTRN--GMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRIKNDSTYWL 284
Query: 258 TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLID 317
+ +L+WRD+++ I + + + + +I W+ D + F W G TG+PL+D
Sbjct: 285 --IFELLWRDYFRFIAAKHGDRLFYTAGLRGLDIPWKED---WERFELWRTGQTGFPLVD 339
Query: 318 SAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSAS 377
+ + +L ++G+M NR R ASFL KN+GI+W G +F ++L D+D+ASN GNW ++A
Sbjct: 340 ANMRELAATGFMSNRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAG 399
Query: 378 SGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGII 437
G ++ FR FN + Q++ +D G +++ +LP+L+ L +H PWK + ++ G+
Sbjct: 400 VGNDARG-FRFFNILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQKRFGVR 458
Query: 438 LGKNYPKPILE 448
LG +YP+P+++
Sbjct: 459 LGVDYPQPVVD 469
>sp|P05066|PHR_YEAST Deoxyribodipyrimidine photo-lyase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHR1 PE=1
SV=1
Length = 565
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 201/403 (49%), Gaps = 46/403 (11%)
Query: 72 VMINHDYEPQAIIRD-KLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQK 130
+ N +Y+ + RD +L++ E + K+ Y D I I G YS+F+ + K
Sbjct: 191 ITANIEYQTDELYRDIRLLENEDHRLQLKY--YHDSCIVAPGLITTDRGTNYSVFTPWYK 248
Query: 131 KWI------EKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSS 184
KW+ +K S C+L Y + + + + + +C ++S
Sbjct: 249 KWVLYVNNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSE 308
Query: 185 LGIKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFK 243
A L +F+ K YN ++ + GTS LS+++ G IS R +V F+
Sbjct: 309 -------EAALSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQ 361
Query: 244 -----FIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYP-NVVNKSFKKEYDNILWESDN 297
+ K K D ++ ++ WRDFY+ + +P + ++ + +I WE++
Sbjct: 362 SCNGQIMSKALK-DNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNP 420
Query: 298 YAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFA 357
A F WC G TG P++D+ + +L +GY++NR RM+TASFL KN+ I+W+WGE +F
Sbjct: 421 VA---FEKWCTGNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFM 477
Query: 358 NKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
L D D +SN G W + +S+G +QP+FR+FN IQ+KK+D Q IF+++++P+L N
Sbjct: 478 KHLIDGDSSSNVGGWGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPELISSEN 537
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRY 460
K +NYPKP+++ S++ LK Y
Sbjct: 538 K-------------------RPENYPKPLVDLKHSRERALKVY 561
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/482 (25%), Positives = 218/482 (45%), Gaps = 34/482 (7%)
Query: 3 VYCVFIFDKNILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
V CV+I LDP + + R F+ +S+ +L +L+ +S L + +
Sbjct: 49 VRCVYI-----LDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFP 103
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG-K 120
+L + + + +D EP RD I K K G + + +++ + I+ G K
Sbjct: 104 RLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQK 163
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN----IISLNDLG 176
P + +Q ++ L PV + + + + + N++ + SL +LG
Sbjct: 164 PPLTYKRFQ------ALISRMELPKKPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELG 217
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFG 230
F L + G + A + L+ +++ K + N P +N S L S +LRFG
Sbjct: 218 FPTEGLGPAVWQGGETEALVRLDKHLER-KAWVANYERPRMNANSLLASPTGLSPYLRFG 276
Query: 231 TISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDN 290
+S R ++ +K K + + QL+WR+F+ P
Sbjct: 277 CLSCRLFYYRLWDLYRK-VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQ 335
Query: 291 ILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NMGINW 349
I W+ + A W +G TG+P ID+ + QL G++H+ R A FL + ++ ++W
Sbjct: 336 IPWDRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSW 392
Query: 350 KWGENYFANKLNDFDLASNNGNWQWSASSGCSS--QPFFRIFNPIIQSKKFDYQGIFIRK 407
+ G F L D D + N G+W W + CS+ Q FF + P+ ++ D G +IR+
Sbjct: 393 ESGVRVFDELLLDADFSVNAGSWMWLS---CSAFFQQFFHCYCPVGFGRRTDPSGDYIRR 449
Query: 408 YLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
YLP+L ++YI+ PW A + A I+G +YP+PI+ H+ + + ++R I L
Sbjct: 450 YLPKLKGFPSRYIYEPWNAPESVQKAANCIIGVDYPRPIVNHAETSRLNIERMKQIYQQL 509
Query: 468 NR 469
+R
Sbjct: 510 SR 511
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 131/480 (27%), Positives = 216/480 (45%), Gaps = 44/480 (9%)
Query: 3 VYCVFIFDKNILDPLRSQ--------GIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYA 54
+Y VF+ D L P ++ G+ R+ F+ +S+ +L L+ S L++ A
Sbjct: 43 LYPVFVLDPRYLRPDQAAPSPGSARAGVA---RVRFLLESLSDLDARLRRLGSRLLLLRA 99
Query: 55 IASKEIKKLVIKL----NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFE 110
++ V NI + D EP A+ RDK + G FS +F+
Sbjct: 100 RDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDKKVMDFAAASGIDVFSPVSHTLFD 159
Query: 111 KNEILNK-TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNI 169
EI+ K G+P + + E + P+ + L + +
Sbjct: 160 PAEIIEKNGGRPPMTYQSFVAIAGEPPE---------PIMEEYSELPPVGDTGEYELLPV 210
Query: 170 ISLNDLGFCKSNLSSLGIKTGAS--GAKILLNNFIKK--IKNYNINRNYPSI---NGTSY 222
+ +LG+ + L + G K + + K + + + PS T+
Sbjct: 211 PRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEKPKGDPSAFLKPATTV 270
Query: 223 LSIHLRFGTISIR---KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV 279
LS +L+FG +S R ++ I++ KKH + QL+WRDF+ + + PN
Sbjct: 271 LSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPV----SLTGQLLWRDFFYTVAFGTPNF 326
Query: 280 VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTAS 339
K I W + ++ F W G TGYP ID+ +IQL G+MH+ R A
Sbjct: 327 DQMKGNKICKQIPWTEN---EELFPAWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVAC 383
Query: 340 FLIK-NMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKF 398
FL + ++ I+W+ G + F L D D A NNGNW W + S Q + RI++P KK+
Sbjct: 384 FLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ-YHRIYSPTSFGKKY 442
Query: 399 DYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILK 458
D G +IR ++P L + +YI+ PW A +KA I+GK+YPKP+++H+++ K K
Sbjct: 443 DPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDHAIASKECKK 502
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 212/432 (49%), Gaps = 31/432 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRD 86
R F+ +S+ L+ +LQ + L++ + + I ++ ++N + + + + + +
Sbjct: 59 RSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVE 118
Query: 87 KLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSN--KCYLQ 144
+ + K+L ++G + Y + ++ +F+ ++K IEK K + C+
Sbjct: 119 RNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKD-IEKKKISIRPCFFA 177
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNL---SSLGIKTGASGAKILLNNF 201
+ L+ S I + + F + N S L + G + L ++
Sbjct: 178 P-------SQLLPSPN----IKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDY 226
Query: 202 I---KKIKNYNINRNYPSINGTSY---LSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIG 255
++K+Y RN + G Y S L G +S R + + + ++ ++ D
Sbjct: 227 FWHGDRLKDYKETRN--GMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTH 284
Query: 256 YFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
+ + +L+WRDF++ + Y N + N W+ D + F W G TGYPL
Sbjct: 285 WL--IFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQED---QVRFELWRSGQTGYPL 339
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+D+ + +LN +G+M NR R ASFL KN+GI+W+WG +F + L D+D+ SN GNW ++
Sbjct: 340 VDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYT 399
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAG 435
A G ++ FR FN QS+++D QG ++R +LP+L L IH PW S+ + ++ G
Sbjct: 400 AGIGNDARD-FRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWG 458
Query: 436 IILGKNYPKPIL 447
+ LG +YP+P +
Sbjct: 459 VQLGVDYPRPCV 470
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 123/480 (25%), Positives = 214/480 (44%), Gaps = 30/480 (6%)
Query: 3 VYCVFIFDKNILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
V CV+I LDP + + R F+ +S+ +L +L+ +S L + +
Sbjct: 50 VRCVYI-----LDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFP 104
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG-K 120
+L + + + +D EP RD I K K G + + +++ + I+ G K
Sbjct: 105 RLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQK 164
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN----IISLNDLG 176
P + +Q ++ L PV + + S + N++ + SL +LG
Sbjct: 165 PPLTYKRFQ------AIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELG 218
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFG 230
F L + G + A L+ +++ K + N P +N S L S +LRFG
Sbjct: 219 FPTEGLGPAVWQGGETEALARLDKHLER-KAWVANYERPRMNANSLLASPTGLSPYLRFG 277
Query: 231 TISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDN 290
+S R ++ KK K + + QL+WR+F+ P
Sbjct: 278 CLSCRLFYYRLWDLYKK-VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQ 336
Query: 291 ILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NMGINW 349
I W+ + A W +G TG+P ID+ + QL G++H+ R A FL + ++ ++W
Sbjct: 337 IPWDRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSW 393
Query: 350 KWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYL 409
+ G F L D D + N G+W W + S Q FF + P+ ++ D G +IR+YL
Sbjct: 394 ESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYL 452
Query: 410 PQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNR 469
P+L ++YI+ PW A + A I+G +YP+PI+ H+ + + ++R I L+R
Sbjct: 453 PKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSR 512
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 123/482 (25%), Positives = 216/482 (44%), Gaps = 34/482 (7%)
Query: 3 VYCVFIFDKNILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
V CV+I LDP + + R F+ +S+ +L +L+ +S L + +
Sbjct: 49 VRCVYI-----LDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFP 103
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG-K 120
+L + + + +D EP RD I K K G + + +++ + I+ G K
Sbjct: 104 RLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQK 163
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN----IISLNDLG 176
P + +Q ++ L P + + + S + N++ + SL +LG
Sbjct: 164 PPLTYKRFQ------ALISRMELPKKPAVAVSSQQMESCRAEIQENHDDTYGVPSLEELG 217
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFG 230
F L + G + A L+ +++ K + N P +N S L S +LRFG
Sbjct: 218 FPTEGLGPAVWQGGETEALARLDKHLER-KAWVANYERPRMNANSLLASPTGLSPYLRFG 276
Query: 231 TISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDN 290
+S R ++ KK K + + QL+WR+F+ P
Sbjct: 277 CLSCRLFYYRLWDLYKK-VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQ 335
Query: 291 ILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NMGINW 349
I W+ + A W +G TG+P ID+ + QL G++H+ R A FL + ++ ++W
Sbjct: 336 IPWDRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSW 392
Query: 350 KWGENYFANKLNDFDLASNNGNWQWSASSGCSS--QPFFRIFNPIIQSKKFDYQGIFIRK 407
+ G F L D D + N G+W W + CS+ Q FF + P+ ++ D G +IR+
Sbjct: 393 ESGVRVFDELLLDADFSVNAGSWMWLS---CSAFFQQFFHCYCPVGFGRRTDPSGDYIRR 449
Query: 408 YLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
YLP+L ++YI+ PW A + A I+G +YP+PI+ H+ + + ++R I L
Sbjct: 450 YLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQL 509
Query: 468 NR 469
+R
Sbjct: 510 SR 511
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 108/434 (24%), Positives = 191/434 (44%), Gaps = 34/434 (7%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRD 86
R F +++ +L +L++ DL++R + + +L + DAV + R
Sbjct: 55 RAVFRRQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRA 114
Query: 87 KLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKK--WIEKVKSNKCYLQ 144
+ L G ++ +++ F+ ++K+ V+ + +
Sbjct: 115 ADVASALDDAGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSAPE 174
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCK---SNLSSLGIKTGASGAKILLNNF 201
+ P L + ++ LG + + + L + G S K + ++
Sbjct: 175 TVPTPDGLTP------------GPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESY 222
Query: 202 I---KKIKNYNINRNYPSINGTSY---LSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIG 255
I ++ Y RN + G Y S L G +S R L + + ++ + +
Sbjct: 223 IWEGDHLREYKTTRN--GLLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERVANEDT- 279
Query: 256 YFTWLS-QLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314
WL +L WRDF+Q Y K NI W+ D + F W G TG P
Sbjct: 280 --YWLVFELAWRDFFQFQFEKYGATFFKPGGIRERNIDWDRD---RALFERWADGETGVP 334
Query: 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQW 374
+D+ + +LN +GYM NR R ASFL +GI+W+WG YF +L D+D+ASN GNW +
Sbjct: 335 FVDANMRELNRTGYMSNRGRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAY 394
Query: 375 SASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKA 434
A G S+ R F+ Q++++D +I +LP+L+ L H PW+ S + +
Sbjct: 395 QAGVGNDSR--DRYFDVRSQAERYDSDAEYITTWLPELAALPATIAHQPWQLSEAEQREY 452
Query: 435 GIILGKNYPKPILE 448
G+ LG +YP+P+++
Sbjct: 453 GVELGVDYPEPVVD 466
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/472 (25%), Positives = 215/472 (45%), Gaps = 29/472 (6%)
Query: 13 ILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDA 71
ILDP + + R F+ +S+ +L +L+ +S L + + +L + +
Sbjct: 45 ILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTR 104
Query: 72 VMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG-KPYSIFSFYQK 130
+ +D EP RD I K K G + ++ + I+ G KP + +Q
Sbjct: 105 LAFEYDSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQ- 163
Query: 131 KWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN----IISLNDLGFCKSNLSSLG 186
++ L PV S ++ + + K+ N++ + SL +LGF L+
Sbjct: 164 -----AIISRMELPKKPVSSIVSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAV 218
Query: 187 IKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFGTISIRKLVKL 240
+ G + A L+ +++ K + N P +N S L S +LRFG +S R
Sbjct: 219 WQGGETEALARLDKHLER-KAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYR 277
Query: 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
+++ KK K + + QL+WR+F+ P I W+ + A
Sbjct: 278 LWELYKK-VKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDKNPEA- 335
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NMGINWKWGENYFANK 359
W +G TG+P ID+ + QL G++H+ R A FL + ++ I+W+ G F
Sbjct: 336 --LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDEL 393
Query: 360 LNDFDLASNNGNWQWSASSGCSS--QPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN 417
L D D + N G+W W + CS+ Q FF + P+ ++ D G ++++YLP+L +
Sbjct: 394 LLDADFSVNAGSWMWLS---CSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPS 450
Query: 418 KYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNILNR 469
+YI+ PW A + A I+G +YPKP++ H+ + + ++R I L+R
Sbjct: 451 RYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQLSR 502
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 133/486 (27%), Positives = 220/486 (45%), Gaps = 42/486 (8%)
Query: 3 VYCVFIFDKNILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+ CV+I LDP + R F+ + + +L NL+ +S L + +
Sbjct: 31 IRCVYI-----LDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN-KTGK 120
+L + NI + I +D EP RD IKK G + +++ ++I+ G+
Sbjct: 86 RLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQ 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN----IISLNDLG 176
P + +Q I K++ + PV++ + ++ +++ + SL +LG
Sbjct: 146 PPLTYKRFQTL-ISKMEPLE-----IPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELG 199
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFG 230
F LSS G + A L +++ K + N P +N S L S +LRFG
Sbjct: 200 FDTDGLSSAVWPGGETEALTRLERHLER-KAWVANFERPRMNANSLLASPTGLSPYLRFG 258
Query: 231 TISIR----KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKK 286
+S R KL L +K +KK+ Y QL+WR+F+ P
Sbjct: 259 CLSCRLFYFKLTDL-YKKVKKNSSPPLSLY----GQLLWREFFYTAATNNPRFDKMEGNP 313
Query: 287 EYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NM 345
I W+ + A W +G TG+P ID+ + QL G++H+ R A FL + ++
Sbjct: 314 ICVQIPWDKNPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 370
Query: 346 GINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS--QPFFRIFNPIIQSKKFDYQGI 403
I+W+ G F L D D + N G+W W + CSS Q FF + P+ ++ D G
Sbjct: 371 WISWEEGMKVFEELLLDADWSINAGSWMWLS---CSSFFQQFFHCYCPVGFGRRTDPNGD 427
Query: 404 FIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+IR+YLP L KYI+ PW A + A ++G NYPKP++ H+ + + ++R I
Sbjct: 428 YIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQI 487
Query: 464 KNILNR 469
L+R
Sbjct: 488 YQQLSR 493
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 133/482 (27%), Positives = 215/482 (44%), Gaps = 34/482 (7%)
Query: 3 VYCVFIFDKNILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
V CV+I LDP + R F+ + + +L NL+ +S L + +
Sbjct: 31 VRCVYI-----LDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN-KTGK 120
+L + NI + I +D EP RD IKK G + +++ ++I+ G+
Sbjct: 86 RLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQ 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
P + +Q I +++ + +++ + S H + SL +LGF
Sbjct: 146 PPLTYKRFQTL-ISRMEPLEMPVETITPEVMKKCTTPVSDDHDE-KYGVPSLEELGFDTD 203
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFGTISI 234
L S G + A L +++ K + N P +N S L S +LRFG +S
Sbjct: 204 GLPSAVWPGGETEALTRLERHLER-KAWVANFERPRMNANSLLASPTGLSPYLRFGCLSC 262
Query: 235 R----KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDN 290
R KL L +K +KK+ Y QL+WR+F+ P
Sbjct: 263 RLFYFKLTDL-YKKVKKNSSPPLSLY----GQLLWREFFYTAATNNPRFDKMEGNPICVQ 317
Query: 291 ILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NMGINW 349
I W+ + A W +G TG+P ID+ + QL G++H+ R A FL + ++ I+W
Sbjct: 318 IPWDKNPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISW 374
Query: 350 KWGENYFANKLNDFDLASNNGNWQWSASSGCSS--QPFFRIFNPIIQSKKFDYQGIFIRK 407
+ G F L D D + N G+W W + CSS Q FF + P+ ++ D G +IR+
Sbjct: 375 EEGMKVFEELLLDADWSVNAGSWMWLS---CSSFFQQFFHCYCPVGFGRRTDPNGDYIRR 431
Query: 408 YLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
YLP L KYI+ PW A + A I+G NYPKP++ H+ + + ++R I L
Sbjct: 432 YLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQL 491
Query: 468 NR 469
+R
Sbjct: 492 SR 493
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 132/486 (27%), Positives = 220/486 (45%), Gaps = 42/486 (8%)
Query: 3 VYCVFIFDKNILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+ CV+I LDP + R F+ + + +L NL+ +S L++ +
Sbjct: 31 IRCVYI-----LDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLLVIRGQPADVFP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN-KTGK 120
+L + NI + I +D EP RD IKK G + +++ ++I+ G+
Sbjct: 86 RLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQ 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN----IISLNDLG 176
P + +Q I K++ + PV++ + ++ +++ + SL +LG
Sbjct: 146 PPLTYKRFQTL-ISKMEPLE-----IPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELG 199
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFG 230
F LSS G + A L +++ + + N P +N S L S +LRFG
Sbjct: 200 FDTDGLSSAVWPGGETEALTRLERHLER-RAWVANFERPRMNANSLLASPTGLSPYLRFG 258
Query: 231 TISIR----KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKK 286
+S R KL L +K +KK+ Y QL+WR+F+ P
Sbjct: 259 CLSCRLFYFKLTDL-YKKVKKNSSPPLSLY----GQLLWREFFYTAATNNPRFDKMEGNP 313
Query: 287 EYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLI-KNM 345
I W+ + A W +G TG+P ID+ + QL G++H+ R A FL ++
Sbjct: 314 ICVQIPWDKNPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTGSDL 370
Query: 346 GINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS--QPFFRIFNPIIQSKKFDYQGI 403
I+W+ G F L D D + N G+W W + CSS Q FF + P+ ++ D G
Sbjct: 371 WISWEEGMKVFEELLLDADWSINAGSWMWLS---CSSFFQQFFHCYCPVGFGRRTDPNGD 427
Query: 404 FIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+IR+YLP L KYI+ PW A + A ++G NYPKP++ H+ + + ++R I
Sbjct: 428 YIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQI 487
Query: 464 KNILNR 469
L+R
Sbjct: 488 YQQLSR 493
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 132/486 (27%), Positives = 220/486 (45%), Gaps = 42/486 (8%)
Query: 3 VYCVFIFDKNILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+ CV+I LDP + R F+ + + +L NL+ +S L + +
Sbjct: 31 IRCVYI-----LDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN-KTGK 120
+L + NI + I +D EP RD IKK G + +++ ++I+ G+
Sbjct: 86 RLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQ 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN----IISLNDLG 176
P + +Q I K++ + PV++ + ++ +++ + SL +LG
Sbjct: 146 PPLTYKRFQTL-ISKMEPLE-----IPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELG 199
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFG 230
F LSS G + A L +++ K + N P +N S L S +LRFG
Sbjct: 200 FDTDGLSSAVWPGGETEALTRLERHLER-KAWVANFERPRMNANSLLASPTGLSPYLRFG 258
Query: 231 TISIR----KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKK 286
+S R KL L +K +K++ Y QL+WR+F+ P
Sbjct: 259 CLSCRLFYFKLTDL-YKKVKRNSSPPLSLY----GQLLWREFFYTAATNNPRFDKMEGNP 313
Query: 287 EYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NM 345
I W+ + A W +G TG+P ID+ + QL G++H+ R A FL + ++
Sbjct: 314 ICVQIPWDKNPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 370
Query: 346 GINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS--QPFFRIFNPIIQSKKFDYQGI 403
I+W+ G F L D D + N G+W W + CSS Q FF + P+ ++ D G
Sbjct: 371 WISWEEGMKVFEELLLDADWSINAGSWMWLS---CSSFFQQFFHCYCPVGFGRRTDPNGD 427
Query: 404 FIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+IR+YLP L KYI+ PW A + A ++G NYPKP++ H+ + + ++R I
Sbjct: 428 YIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQI 487
Query: 464 KNILNR 469
L+R
Sbjct: 488 YQQLSR 493
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 131/486 (26%), Positives = 216/486 (44%), Gaps = 42/486 (8%)
Query: 3 VYCVFIFDKNILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+ CV+I LDP + R F+ + + +L NL+ +S L + +
Sbjct: 31 IRCVYI-----LDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN-KTGK 120
+L + NI + I +D EP RD IKK G + +++ ++I+ G+
Sbjct: 86 RLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQ 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN----IISLNDLG 176
P + +Q +K P + ++++ +++ + SL +LG
Sbjct: 146 PPLTYKRFQ------TLVSKMEPLEMPADTITSDVIGKCTTPLSDDHDEKYGVPSLEELG 199
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFG 230
F LSS G + A L +++ K + N P +N S L S +LRFG
Sbjct: 200 FDTDGLSSAVWPGGETEALTRLERHLER-KAWVANFERPRMNANSLLASPTGLSPYLRFG 258
Query: 231 TISIR----KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKK 286
+S R KL L +K +KK+ Y QL+WR+F+ P
Sbjct: 259 CLSCRLFYFKLTDL-YKKVKKNSSPPLSLY----GQLLWREFFYTAATNNPRFDKMEGNP 313
Query: 287 EYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NM 345
I W+ + A W +G TG+P ID+ + QL G++H+ R A FL + ++
Sbjct: 314 ICVQIPWDKNPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 370
Query: 346 GINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS--QPFFRIFNPIIQSKKFDYQGI 403
I+W+ G F L D D + N G+W W + CSS Q FF + P+ ++ D G
Sbjct: 371 WISWEEGMKVFEELLLDADWSINAGSWMWLS---CSSFFQQFFHCYCPVGFGRRTDPNGD 427
Query: 404 FIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+IR+YLP L KYI+ PW A + A ++G NYPKP++ H+ + + ++R I
Sbjct: 428 YIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQI 487
Query: 464 KNILNR 469
L+R
Sbjct: 488 YQQLSR 493
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 131/482 (27%), Positives = 215/482 (44%), Gaps = 34/482 (7%)
Query: 3 VYCVFIFDKNILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
V CV+I LDP + R F+ + + +L NL+ +S L + +
Sbjct: 31 VRCVYI-----LDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN-KTGK 120
+L + +I + I +D EP RD IKK G + +++ ++I+ G+
Sbjct: 86 RLFKEWSIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQ 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKS 180
P + +Q I +++ + +++ + S H + SL +LGF
Sbjct: 146 PPLTYKRFQTL-ISRMEPLEMPVETITPEVMQKCTTPVSDDHDE-KYGVPSLEELGFDTD 203
Query: 181 NLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFGTISI 234
L S G + A L +++ K + N P +N S L S +LRFG +S
Sbjct: 204 GLPSAVWPGGETEALTRLERHLER-KAWVANFERPRMNANSLLASPTGLSPYLRFGCLSC 262
Query: 235 R----KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDN 290
R KL L +K +KK+ Y QL+WR+F+ P
Sbjct: 263 RLFYFKLTDL-YKKVKKNSSPPLSLY----GQLLWREFFYTAATNNPRFDKMEGNPICVQ 317
Query: 291 ILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NMGINW 349
I W+ + A W +G TG+P ID+ + QL G++H+ R A FL + ++ I+W
Sbjct: 318 IPWDKNPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISW 374
Query: 350 KWGENYFANKLNDFDLASNNGNWQWSASSGCSS--QPFFRIFNPIIQSKKFDYQGIFIRK 407
+ G F L D D + N G+W W + CSS Q FF + P+ ++ D G +IR+
Sbjct: 375 EEGMKVFEELLLDADWSVNAGSWMWLS---CSSFFQQFFHCYCPVGFGRRTDPNGDYIRR 431
Query: 408 YLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNIL 467
YLP L KYI+ PW A + A ++G NYPKP++ H+ + + ++R I L
Sbjct: 432 YLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPKPMVNHAEASRLNIERMKQIYQQL 491
Query: 468 NR 469
+R
Sbjct: 492 SR 493
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 155 bits (391), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 133/486 (27%), Positives = 217/486 (44%), Gaps = 42/486 (8%)
Query: 3 VYCVFIFDKNILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
V CV+I LDP + R F+ + + +L NL+ +S L + +
Sbjct: 31 VRCVYI-----LDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN-KTGK 120
+L + NI + I +D EP RD IKK G + +++ ++I+ G+
Sbjct: 86 RLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQ 145
Query: 121 PYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNN----IISLNDLG 176
P + +Q I +++ + PV++ ++ +++ + SL +LG
Sbjct: 146 PPLTYKRFQT-LISRMEPLE-----MPVETITPEVMKKCTTPVFDDHDEKYGVPSLEELG 199
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFG 230
F L S G + A L +++ K N P +N S L S +LRFG
Sbjct: 200 FDTDGLPSAVWPGGETEALTRLERHLER-KASVANFERPRMNANSLLASPTGLSPYLRFG 258
Query: 231 TISIR----KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKK 286
+S R KL L +K +KK+ Y QL+WR+F+ P
Sbjct: 259 CLSCRLFYFKLTDL-YKKVKKNSSPPLSLY----GQLLWREFFYTAATNNPRFDKMEGNP 313
Query: 287 EYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NM 345
I W+ + A W +G TG+P ID+ + QL G++H+ R A FL + ++
Sbjct: 314 ICVQIPWDKNPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 370
Query: 346 GINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS--QPFFRIFNPIIQSKKFDYQGI 403
I+W+ G F L D D + N G+W W + CSS Q FF + P+ ++ D G
Sbjct: 371 WISWEEGMKVFEELLLDADWSVNAGSWMWLS---CSSFFQQFFHCYCPVGFGRRTDPNGD 427
Query: 404 FIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+IR+YLP L KYI+ PW A + A I+G NYPKP++ H+ + + ++R I
Sbjct: 428 YIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQI 487
Query: 464 KNILNR 469
L+R
Sbjct: 488 YQQLSR 493
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 134/486 (27%), Positives = 216/486 (44%), Gaps = 42/486 (8%)
Query: 3 VYCVFIFDKNILDP-LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
+ CV+I LDP + R F+ + + +L NL+ +S L + +
Sbjct: 31 IRCVYI-----LDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFP 85
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILN-KTGK 120
+L + NI + I +D EP RD IKK G + +++ ++I+ G+
Sbjct: 86 RLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQ 145
Query: 121 PYSIFSFYQK--KWIEKVKSNKCYLQSYPVKSYLNNLV--HSSKLHKIINNNIISLNDLG 176
P + +Q +E ++ + S + + L H K + SL +LG
Sbjct: 146 PPLTYKRFQTLVSKMEPLEMPADTITSDVIGKCMTPLSDDHDEKY------GVPSLEELG 199
Query: 177 FCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNYPSINGTSYL------SIHLRFG 230
F LSS G + A L +++ K + N P +N S L S +LRFG
Sbjct: 200 FDTDGLSSAVWPGGETEALTRLERHLER-KAWVANFERPRMNANSLLASPTGLSPYLRFG 258
Query: 231 TISIR----KLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKK 286
+S R KL L +K +KK+ Y QL+WR+F+ P
Sbjct: 259 CLSCRLFYFKLTDL-YKKVKKNSSPPLSLY----GQLLWREFFYTAATNNPRFDKMEGNP 313
Query: 287 EYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NM 345
I W+ + A W +G TG+P ID+ + QL G++H+ R A FL + ++
Sbjct: 314 ICVQIPWDKNPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 370
Query: 346 GINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSS--QPFFRIFNPIIQSKKFDYQGI 403
I+W+ G F L D D + N G+W W + CSS Q FF + P+ ++ D G
Sbjct: 371 WISWEEGMKVFEELLLDADWSINAGSWMWLS---CSSFFQQFFHCYCPVGFGRRTDPNGD 427
Query: 404 FIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463
+IR+YLP L KYI+ PW A + A ++G NYPKP++ H+ + + ++R I
Sbjct: 428 YIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQI 487
Query: 464 KNILNR 469
L+R
Sbjct: 488 YQQLSR 493
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 125/501 (24%), Positives = 221/501 (44%), Gaps = 57/501 (11%)
Query: 1 MEVYCVFIFDKNILDPLRSQG--IIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASK 58
+ +Y +FIFD S G ++ R++F+ +S+ +L L+ L + A
Sbjct: 35 VRLYPIFIFDGE------SAGTKLVGFNRMKFLLESLADLDRQLREIGGQLYVFKGNAVN 88
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
+++L +LNI + D EP RD I+ +++ K +++ +I+
Sbjct: 89 VMRRLFEELNIRKLCFEQDCEPIWKARDDAIQNLCRMMDVKCVEKVSHTLWDPQQIIRTN 148
Query: 119 G--KPYSIFSFYQKKWIEKVKSNKCYLQSYPV---KSYLNNLVHSSKLHKIINNNIISLN 173
G P + F I S+ S + L KL ++ N +S
Sbjct: 149 GGIPPLTYQMFLHTVDIIGKPPRPVAAPSFEFVEFGSIPSILAQEVKLQQVRN---LSPE 205
Query: 174 DLGF---CKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNY-PSINGTSYL------ 223
D G ++S G + A L + +K+ + + + P+ +L
Sbjct: 206 DFGIYYEGNPDISHQQWMGGETKALECLGHRLKQEEEAFLGGYFLPTQAKPEFLVPPTSM 265
Query: 224 SIHLRFGTISIRKLVKLIFKFIKK-----HYKTDCIGYFTWLSQLIWRDFYQMILYCYPN 278
S LRFG +S+R + +K Y+ + T QLIWR+++ + P+
Sbjct: 266 SAALRFGCLSVRMFYWCVHDLYEKVQANNQYRNPGGQHIT--GQLIWREYFYTMSVHNPH 323
Query: 279 VVNKSFKKEYDNILWESDNYAKKN--FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMV 336
NI W Y K+ W +G TG+P+ID+A+ QL + G++H+ LR +
Sbjct: 324 YAEMEANPICLNIPW----YEPKDDSLDRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNI 379
Query: 337 TASFLIKN-MGINWKWGENYFANKLNDFDLASNNGNWQWSASSG---------CSSQPFF 386
TA+FL + + I+W+ G +F L D D + GNW W +SS C+S
Sbjct: 380 TATFLTRGALWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTS---- 435
Query: 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPI 446
PI +++ D +G ++R+YLP+L L Y+H PWKA ++ G I+G++YP P+
Sbjct: 436 ----PIALARRLDPKGEYVRRYLPELKNLPTLYVHEPWKAPLDVQKECGCIVGRDYPAPM 491
Query: 447 LEHSLSKKNILKRYNFIKNIL 467
++ + + + N I+ L
Sbjct: 492 IDLAAASRANANTMNSIRQKL 512
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 109/429 (25%), Positives = 204/429 (47%), Gaps = 22/429 (5%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL-NIDAVMINHDYEPQAIIR 85
R++F+ +S+ +L I L+ S+L++R + I+ LV +L N+ AV ++ + +
Sbjct: 60 RLKFLLESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDV 119
Query: 86 DKLIKKELKVIGCKFFSYKDQVIFEKNEI-LNKTGKPYSIFSFYQKKWIEKVKSNKCYLQ 144
+ +K+ +G K+ ++ ++ + ++ +++ ++K + K +
Sbjct: 120 ESAVKQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQM 179
Query: 145 SYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKK 204
+K + L S + L D ++ G S A L ++ +
Sbjct: 180 PDKLKPLPSGLEEGSVPSHEDFDQQDPLTD------PRTAFPCSGGESQALQRLEHYFWE 233
Query: 205 ---IKNYNINRNYPSINGTSY---LSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFT 258
+ +Y RN + G Y + L G +S R + + I K+ K+ +T +
Sbjct: 234 TNLVASYKDTRN--GLIGLDYSTKFAPWLALGCVSPRYIYEQIGKYEKE--RTANQSTYW 289
Query: 259 WLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318
+ +L+WRD+++ + Y + + +I W+ D K F W +G TG P +D+
Sbjct: 290 VIFELLWRDYFRFVALKYGRRIFFLRGLQDKDIPWKRD---PKLFDAWKEGRTGVPFVDA 346
Query: 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASS 378
+ +L +G+M NR R ASFL K++GI+W+ G +F L D+D+ SN GNW +SA
Sbjct: 347 NMRELAMTGFMSNRGRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGI 406
Query: 379 GCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIIL 438
G + R FN I Q +D G +IR ++P+L ++ H+PW S+ L A + L
Sbjct: 407 GNDPRE-NRKFNMIKQGLDYDSGGDYIRLWVPELQQIKGGDAHTPWALSNASLAHANLSL 465
Query: 439 GKNYPKPIL 447
G+ YP PI+
Sbjct: 466 GETYPYPIV 474
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 114/487 (23%), Positives = 223/487 (45%), Gaps = 53/487 (10%)
Query: 1 MEVYCVFIFDKNILDPLRSQG--IIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASK 58
++++ +FIFD S G I+ R++F+ +S+ +L ++ L++ +
Sbjct: 37 VKLFPIFIFDGE------SAGTRIVGYNRMKFLLESLADLDRQFRDLGGQLLVFRGDSVT 90
Query: 59 EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT 118
+++L +LNI + D EP RD + K + + + ++ E++
Sbjct: 91 VLRRLFEELNIKKLCYEQDCEPIWKERDDAVAKLCRTMDVRCVENVSHTLWNPIEVIQTN 150
Query: 119 GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNI------ISL 172
G I + ++ V N PV + V ++ ++ + + +
Sbjct: 151 G---DIPPLTYQMFLHTV--NIIGDPPRPVGAPNFEYVEFGRVPALLASELKLCQQMPAP 205
Query: 173 NDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKN---------YNINRNYPSING-TSY 222
+D G + + + G L ++K Y + P I G +
Sbjct: 206 DDFGIHYDGNARIAFQKWIGGETRALEALGARLKQEEEAFREGYYLPTQAKPEILGPATS 265
Query: 223 LSIHLRFGTISIRKL---VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV 279
+S LRFG +S+R V +F ++ + + G QLIWR+++ + P+
Sbjct: 266 MSAALRFGCLSVRMFYWCVHDLFAKVQSNSQFKYPGGHHITGQLIWREYFYTMSVQNPHY 325
Query: 280 VNKSFKKEYDNILW---ESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMV 336
NI W E D+ + W +G TG+P+ID+A+ QL + G++H+ LR +
Sbjct: 326 GEMERNPICLNIPWYKPEDDSLTR-----WKEGRTGFPMIDAAMRQLLAEGWLHHILRNI 380
Query: 337 TASFLIKN-MGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFN----- 390
TA+FL + + ++W+ G +F L D D + GNW W +SS F R+ +
Sbjct: 381 TATFLTRGGLWLSWEEGLQHFLKYLLDADWSVCAGNWMWVSSSA-----FERLLDSSKCT 435
Query: 391 -PIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
PI +++ D +G ++++YLP+L+ +++H PWKAS + + G ++G+ YP P+++
Sbjct: 436 CPIALARRLDPKGDYVKRYLPELANYPAQFVHEPWKASREQQIEYGCVIGEKYPAPMVDL 495
Query: 450 SL-SKKN 455
++ SK+N
Sbjct: 496 AIVSKRN 502
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 16/264 (6%)
Query: 155 LVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKNYNINRNY 214
L L K I D G L G + +G + L K+ Y R+
Sbjct: 150 LPAPEALPKGPEEGEIPREDPGLP---LPEPGEEAALAGLRAFLE---AKLPRYAEERDR 203
Query: 215 PSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILY 274
G S LS + G +S R + + G W+++L+WRDF +LY
Sbjct: 204 LDGEGGSRLSPYFALGVLSPRLAAW-------EAERRGGEGARKWVAELLWRDFSYHLLY 256
Query: 275 CYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLR 334
+P + + + + W+ D + F W +G TG PL+D+A+ +L+++G++ NR R
Sbjct: 257 HFPWMAERPLDPRFQALPWQED---EALFRAWYEGRTGVPLVDAAMRELHATGFLSNRAR 313
Query: 335 MVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQ 394
M A F +K++ + WK E F + L D D A N WQW+ G + P+FR+FNP++Q
Sbjct: 314 MNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQ 373
Query: 395 SKKFDYQGIFIRKYLPQLSKLSNK 418
++ D +G +++++ P+ + K
Sbjct: 374 GERHDPEGRWLKRWAPEYPSYAPK 397
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/444 (24%), Positives = 207/444 (46%), Gaps = 52/444 (11%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRD 86
R+ F+ S+ +L L+ + S L++R + +L+ +L + + H+ + +
Sbjct: 59 RLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHE---EVASEE 115
Query: 87 KLIKKELKVIGC----KFFSYKDQVIFEKNEI-LNKTGKPYSIFSFYQKK---------- 131
K ++++LK I C + ++ ++ ++++ + G +++ ++K
Sbjct: 116 KSVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPV 175
Query: 132 --WIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKT 189
E+VKS L+ P+ ++ +++ L C+S G
Sbjct: 176 LSTPEQVKSPPSGLEEGPIPTF---------------DSLGQTEPLDDCRSAFPCRG--- 217
Query: 190 GASGAKILLNNF---IKKIKNYNINRN-YPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
G + A L ++ + Y RN ++ ++ S L G IS R I++ I
Sbjct: 218 GETEALARLKHYFWDTNAVATYKETRNGMIGVDFSTKFSPWLALGCISPR----YIYEQI 273
Query: 246 KKHYKTDCIGYFTW--LSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNF 303
KK+ T+ + +L+WRD+++ + Y N + + ++ W +D K F
Sbjct: 274 KKYEVERTANQSTYWVIFELLWRDYFKFVALKYGNRIFYMNGLQDKHVPWNTD---MKMF 330
Query: 304 LNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF 363
W +G TG P +D+ + +L +G+M NR R ASFL K++G++W+ G +F L D
Sbjct: 331 DAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDH 390
Query: 364 DLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
D+ SN GNW +SA G + R FN I Q +D G ++R+++P+L + +H+P
Sbjct: 391 DVCSNYGNWLYSAGIGNDPRE-NRKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTP 449
Query: 424 WKASSYKLEKAGIILGKNYPKPIL 447
W S+ L A + L + YP PI+
Sbjct: 450 WTLSNSALSHAQVSLNQTYPCPII 473
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 11/232 (4%)
Query: 188 KTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
+ G A L F++ K+ Y R+ G S LS + G +S R
Sbjct: 176 EPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFALGVLSPRLAAW------- 228
Query: 247 KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNW 306
+ + G W+++L+WRDF +LY +P + + + W+ D + F W
Sbjct: 229 EAERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQED---EALFQAW 285
Query: 307 CKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLA 366
+G TG PL+D+A+ +L+++G++ NR RM A F +K++ + WK E F + L D D A
Sbjct: 286 YEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRA 345
Query: 367 SNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
N WQW+ G + P+FR+FNP++Q ++ D +G +++++ P+ + K
Sbjct: 346 VNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYAPK 397
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 229/493 (46%), Gaps = 65/493 (13%)
Query: 6 VFIFDKNILDPLRSQGI--IEDRRIEFIFKSIIELSINLQ---NYDSDLIIRYAIASKEI 60
VFIFD S G + R+ F+ S+ ++ LQ + L++ +
Sbjct: 39 VFIFDGE------SAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIF 92
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG- 119
++L ++ + + I D EP RD+ I+ + + F +++ ++ G
Sbjct: 93 RRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGG 152
Query: 120 -KPYS---------IFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNI 169
P + I + + + +++ P + +L +L + N+
Sbjct: 153 IPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDP--EFCRSLKLFEQLPTPEHFNV 210
Query: 170 ISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKN------YNINRNYPSINGTS-Y 222
+++GF L+ + + G + A +LL+ +K ++ Y N+ P+I+ +
Sbjct: 211 YG-DNMGF----LAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKS 265
Query: 223 LSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI------GYFTWLSQLIWRD-FYQMILYC 275
+S HLRFG +S+R+ + K C+ G QLIWR+ FY M
Sbjct: 266 MSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTM---- 321
Query: 276 YPNVVNKSFKKEYDNILWESDNYAKKN---FLNWCKGYTGYPLIDSAIIQLNSSGYMHNR 332
+V N ++ + N + S +AK N +W G TG+PLID A+ QL + G++H+
Sbjct: 322 --SVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHT 379
Query: 333 LRMVTASFLIKN-MGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFN- 390
LR A+FL + + +W+ G +F L D D + GNW W +SS F R+ +
Sbjct: 380 LRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSA-----FERLLDS 434
Query: 391 -----PIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKP 445
P+ +K+ D G +I++Y+P+L + +++H PW+ S+ + E+ ++G +YP+
Sbjct: 435 SLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPER 494
Query: 446 ILEHSLS-KKNIL 457
I++ S++ K+N+L
Sbjct: 495 IIDLSMAVKRNML 507
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/503 (25%), Positives = 230/503 (45%), Gaps = 66/503 (13%)
Query: 6 VFIFDKNILDPLRSQGI--IEDRRIEFIFKSIIELSINLQNYDSD---LIIRYAIASKEI 60
VFIFD S G + R+ F+ S+ +L LQ+ L + +
Sbjct: 39 VFIFDGE------SAGTKSVGYNRMRFLLDSLQDLDEQLQSATEGRGRLFVFEGEPTLIF 92
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTG- 119
++L ++ + + D EP RD+ + + +G ++ +++ ++ G
Sbjct: 93 RRLHEQVRLHKICAELDCEPIWNERDESARLLCRELGIEYVEKVSHTLWDPRLVIETNGG 152
Query: 120 -KPYS---------IFSFYQKKWIEKVKSNKCYLQSYP-VKSYLNNLVHSSKLHKIINNN 168
P + I + I+ ++ ++Q P ++ +L ++ + N
Sbjct: 153 IPPLTYQMFLHTVQIIGVPPRPAIDAHINDATFIQLAPELRQHLGCF---DQVPNPEHFN 209
Query: 169 IISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIKKIKN------YNINRNYPSIN-GTS 221
I S +++GF L+ + + G + A LL +K +N Y N+ P+I
Sbjct: 210 IYS-DNMGF----LAKINWRGGETQALALLEERLKVERNAFERGYYLPNQANPNIQEAPK 264
Query: 222 YLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI------GYFTWLSQLIWRD-FYQMILY 274
+S HLRFG +S+R+ + + C+ G QLIWR+ FY M
Sbjct: 265 SMSAHLRFGCLSVRRFYWSVHDLFENVQLAACVRGVQIEGGAHITGQLIWREYFYTM--- 321
Query: 275 CYPNVVNKSFKKEYDNILWESDNYAK--KNFLN-WCKGYTGYPLIDSAIIQLNSSGYMHN 331
+V N ++ + N + + +AK +N L W G TG+PLID A+ QL + G++H+
Sbjct: 322 ---SVNNPNYDRMEGNEICLTIPWAKPDENLLQRWRLGQTGFPLIDGAMRQLLAEGWLHH 378
Query: 332 RLRMVTASFLIKN-MGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFN 390
LR A+FL + + +W+ G +F L D D + GNW W +SS F R+ +
Sbjct: 379 TLRNTVATFLTRGGLWQSWEPGLKHFLKYLLDADWSVCAGNWMWVSSSA-----FERLLD 433
Query: 391 ------PIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPK 444
P+ +K+ D +G++IR+Y+P+L L +YIH PW+ S+ + K ++G +YP+
Sbjct: 434 SSLVTCPVALAKRLDPEGVYIRRYVPELKNLPKEYIHEPWRLSAEQQVKFECLIGVHYPE 493
Query: 445 PILEHSLSKKNILKRYNFIKNIL 467
I++ S + K + ++N L
Sbjct: 494 RIIDLSKAVKRNMMAMTALRNSL 516
>sp|B0WRR9|CRY1_CULQU Cryptochrome-1 OS=Culex quinquefasciatus GN=cry PE=3 SV=1
Length = 499
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 19/258 (7%)
Query: 221 SYLSIHLRFGTISIRKL---VKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYP 277
S +S LRFG +S+R V +F ++ + + G QLIWR+++ + P
Sbjct: 217 SSMSAALRFGCLSVRMFYWCVHDLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVHNP 276
Query: 278 NVVNKSFKKEYDNILWESDNYAKKNFLN-WCKGYTGYPLIDSAIIQLNSSGYMHNRLRMV 336
+ NI W AK + L+ W +G TG+PLID+A+ QL + G++H+ LR +
Sbjct: 277 HYAVMELNPICLNIPWYE---AKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNI 333
Query: 337 TASFLIKN-MGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFN----- 390
TA+FL + + I+W+ G +F L D D + GNW W +SS F ++ +
Sbjct: 334 TATFLTRGGLWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSSA-----FEKLLDSSSCT 388
Query: 391 -PIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEH 449
P+ +++ D +G ++++YLP+L K Y+H PWKA E+ G ++GK+YP P++
Sbjct: 389 SPVALARRLDPKGEYVKRYLPELEKFPALYVHEPWKAPPELQEQYGCVIGKDYPAPMVNL 448
Query: 450 SLSKKNILKRYNFIKNIL 467
+ K + N I+ L
Sbjct: 449 AEVNKCNANKMNAIRQKL 466
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 139/264 (52%), Gaps = 15/264 (5%)
Query: 167 NNIISLNDLGFCKSNLS-SLGIKTGASGAKILLNNFIKK---IKNYNINRNYPSINGTSY 222
++ +++LG + +S + G S A ++++ K +K Y RN + G Y
Sbjct: 279 GHVPQVSELGLQQEKVSKGMNFVGGESAALGRVHDYFWKKDLLKVYKETRN--GMLGADY 336
Query: 223 ---LSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNV 279
S L G++S R + + + ++ K+ D + L +LIWRD+++ + N+
Sbjct: 337 STKFSPWLASGSLSPRFIYEEVKRYEKERLSNDSTYWV--LFELIWRDYFRFLSIKLANL 394
Query: 280 VNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTAS 339
+ ++ + NI W D + F W +G TGYPLID+ + +L ++GYM NR R + S
Sbjct: 395 LFQAGGPQKVNINWSQD---QTMFDAWRRGQTGYPLIDANMKELAATGYMSNRGRQIVCS 451
Query: 340 FLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFD 399
FL+++MGI+W+ G +F L D+D SN GNW + A G + R F+ Q++ +D
Sbjct: 452 FLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYD 510
Query: 400 YQGIFIRKYLPQLSKLSNKYIHSP 423
+G F+ +LP+L L + HSP
Sbjct: 511 PEGEFVAYWLPELRALPREKRHSP 534
>sp|Q7SI68|CRYD_NEUCR Putative cryptochrome DASH, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B22I21.260 PE=3 SV=1
Length = 745
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 123/511 (24%), Positives = 224/511 (43%), Gaps = 82/511 (16%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKL-----NIDAVMINHDYEPQ 81
R +F+ +S+ +L +LQ+ SDL++R I+ LV L + AV + +
Sbjct: 80 RAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKECQVGAVWMTSHEGSE 139
Query: 82 AIIRDKLIKKELKVIGCKFFSYKDQ--VIFEKNEILNKTGKPYSIFSFYQKKWIEKVKS- 138
+K + G F + D+ +I +++ + +F+ Y+K+ IE ++
Sbjct: 140 EKSEEKTVASFCAKSGIDFKLWDDEKYLIHDRDTGITHLNDLPDVFTTYRKQ-IEPLREK 198
Query: 139 --------NKCYLQSYP-------------VKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
K L +YP + LV + + + + N + L D F
Sbjct: 199 ARKTLPVPEKGALPAYPDIDMIPSQQPPFNIPGTCEELVDA--VVRPVKNFLKDLPD--F 254
Query: 178 CKSNLSSLGIKTGASGAKILLNNFI--KKIKNYNINRNYPSINGTSY---LSIHLRFGTI 232
+ SS + G + A +++ + +K+Y +RN + G + LS +L G +
Sbjct: 255 PEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRN--GLLGPDFSTKLSAYLAQGCV 312
Query: 233 SIRKLVKLI----------FKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYP----- 277
+ R++ + +K + D G T +L+WRD+ ++ Y
Sbjct: 313 TARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMRLCHQKYGDKLFR 372
Query: 278 ----NVVNKSFKKEYDNILWESDNYA-------------KKNFLNWCKGYTGYPLIDSAI 320
N + ++ E W + N + + + G TG LID++
Sbjct: 373 VEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFNAGTTGMGLIDASQ 432
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
+L +GY NR R ASFL K++ I+W++G ++ L D+D++SN NWQ+ A G
Sbjct: 433 RELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSSNWANWQYVAGVGN 492
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSN-KYIHSPWKASSYKLEKAGI--- 436
+ RIFNP+ Q+ +D G ++R ++P+++K N + + W AS L+ AG+
Sbjct: 493 DPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKFENLENVFQAWTASKEDLKTAGLEGN 552
Query: 437 ILGKNYPKPI---LEHSLSKKNILKRYNFIK 464
I+ + KPI L+H SK + KR F K
Sbjct: 553 IMVTDPVKPIKFNLDHKPSK--VKKRPFFRK 581
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 102/410 (24%), Positives = 192/410 (46%), Gaps = 34/410 (8%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRD 86
R F+ + +++L NL +L+IR + + L V + + + + +
Sbjct: 138 RGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVE 197
Query: 87 KLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSF---YQKKWIEKVKSNKCYL 143
+L+ + LK +G S K ++I+ + + +K P+ +F Y + K KC +
Sbjct: 198 RLVNQGLKRVGN---STKLELIW-GSTMYHKDDLPFDVFDLPDVYTQ--FRKSVEAKCSI 251
Query: 144 QSYPVKSYLNNLVHSSKLHKIINN--NIISLNDLGFCKSNLSSLGIKTGASGAKI--LLN 199
+S + S +++ ++ +L LG ++ G A + +
Sbjct: 252 RSS------TRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFE 305
Query: 200 NFIKK--IKNYNINRNYPSINGTSY---LSIHLRFGTISIRKLVKLIFKFIKKHYKTDCI 254
F KK +K Y RN + G Y S L FG IS R + + + ++ K+ +
Sbjct: 306 YFWKKDLLKVYKETRN--GMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNST 363
Query: 255 GYFTWLSQLIWRDFYQMI-LYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGY 313
+ L +LIWRD+++ + + C ++ + + W D +K F +W TGY
Sbjct: 364 YWV--LFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGK-WSQD---QKLFESWRDAKTGY 417
Query: 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQ 373
PLID+ + +L+++G+M NR R + SFL+++MG++W+ G +F L D+D SN GNW
Sbjct: 418 PLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWT 477
Query: 374 WSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
+ A G + R F+ Q++ +D +G ++ +L QL +L + H P
Sbjct: 478 YGAGVGNDPRE-DRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 526
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 117/480 (24%), Positives = 203/480 (42%), Gaps = 60/480 (12%)
Query: 1 MEVYCVFIFDKNILDPL-RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE 59
+EV V++FD+ P R R +F + + +L +L+ SDL++R +
Sbjct: 35 VEVVPVYVFDETYFKPSKRGLARFGAGRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDV 94
Query: 60 IKKLVIKLNIDAVMI-----------NHDYEPQAIIRDKLIKKELKVIGCKFFS----YK 104
I +L + D +I D + R++ + + +
Sbjct: 95 IAELTLTGANDRTIILTQTEVTSEETEMDVAVERATRERARGGAASATMERHWGSTLYHI 154
Query: 105 DQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKI 164
D V F+ L+ ++ F KV+S KC ++ N L H +
Sbjct: 155 DDVPFDVTSGLSDLPDVFTPFR-------NKVES-KCKVRDVIPAPTANELGHVPASVEG 206
Query: 165 INNNIISLNDLGFCKSNL---------------SSLGIKTGASGAKILLNNFI---KKIK 206
+ +DL F S + S L K G S A + ++ ++
Sbjct: 207 FEW-MPKPSDLPFASSEIAMDCDKRIKDCLDERSVLDFKGGESNALARVKYYLWESDRLA 265
Query: 207 NYNINRNYPSINGTSY---LSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQL 263
Y RN + G Y L+ L G +S R +V I ++ + + + + +L
Sbjct: 266 TYFETRN--GMLGGDYSTKLAPWLALGCVSPRHVVSEIRRYESERVENKSTYWV--IFEL 321
Query: 264 IWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQL 323
IWRDF++ + N + W+ D +K W G TGYPLID+ + +L
Sbjct: 322 IWRDFFKFFALKHGNKIFHLDGTAGRRASWKRD---EKILKAWKTGTTGYPLIDANMREL 378
Query: 324 NSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383
++G+M NR R AS+L + GI+W+ G ++F + L D+D ASN GN W A++G +
Sbjct: 379 AATGFMSNRGRQNVASWLALDAGIDWRHGADWFEHHLLDYDTASNWGN--WCAAAGMTGG 436
Query: 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYP 443
R FN Q+K +D G +I+ ++ +L+++ YI P +A ++ G+ NYP
Sbjct: 437 RINR-FNIAKQTKDYDPAGEYIKTWVKELAEVPAAYIADPNQAPRELRDRIGL----NYP 491
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 136/279 (48%), Gaps = 10/279 (3%)
Query: 186 GIKTGAS--GAKILLNNFIKKIKNYNINRNYPSI--NGTSYLSIHLRFGTISIRKLVKLI 241
G++TG S L + F ++ + Y + + PS+ + S +S +L +G IS+R++ + +
Sbjct: 189 GMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRMSPYLAWGNISLREMYQTL 248
Query: 242 FK-FIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAK 300
K + ++ I S+L W + + + + YD++L +S +
Sbjct: 249 LKHWSVAGFRRSLIALS---SRLHWHCHFIQKFESECEMEFRCVNRAYDSLLQQSSDAPA 305
Query: 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKL 360
W G+TG PL+D+ + L +GY++ R+R + S L +M ++W+ G Y A
Sbjct: 306 AQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTHHMNVDWRAGVTYLAQLF 365
Query: 361 NDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYI 420
DF+ + +Q A G + RI+NP Q+++ D +G FI K++P+L+++ +
Sbjct: 366 LDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQEHDSEGQFIHKWVPELAQVPVPLL 423
Query: 421 HSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKR 459
PW + + + + L Y KP+++ S K R
Sbjct: 424 FEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDR 462
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 11/223 (4%)
Query: 204 KIKNYNINRNYPSINGTSY---LSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWL 260
++K Y RN + G Y S L G++S R + + + ++ K+ D + L
Sbjct: 330 QLKVYKETRN--GMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRIANDSTYWV--L 385
Query: 261 SQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320
+LIWRD+++ I Y N + W D + F +W G TGYPLID+ +
Sbjct: 386 FELIWRDYFRFISAKYGNSIFHLGGPRNVESKWSQD---QALFESWRDGRTGYPLIDANM 442
Query: 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGC 380
+L ++G+M NR R + SFL+++MGI+W+ G +F L D+D ASN GNW + A G
Sbjct: 443 KELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNWTYGAGVGN 502
Query: 381 SSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSP 423
+ R F+ Q+K +D G ++ +LP+L ++ + + P
Sbjct: 503 DPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFP 544
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/398 (22%), Positives = 181/398 (45%), Gaps = 42/398 (10%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRD 86
R F+ +S+ +L L+ LI+ + + +L+ + +DA+ ++ ++
Sbjct: 68 RFTFLQQSLKQLRTELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQHQGYYERLQL 127
Query: 87 KLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSY 146
L+++ + F + +F + E+ + FS ++KK +E + N
Sbjct: 128 GLLQQRFPFL--PFHETPNNTLFSEQELPFELADLPETFSQFRKK-VEPLSRNFSVQPVN 184
Query: 147 PVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFI--KK 204
+ S N+ + + +N L+S + G A L ++ +
Sbjct: 185 ALPSLPKNISYPGFKAETLNE--------------LASDDFEGGERAALTHLTSYFSGES 230
Query: 205 IKNYNINRN-YPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLS-Q 262
Y RN + ++ S L G +S+R+++ + + + + + Y W+S +
Sbjct: 231 AGTYKQTRNALDDFSSSTKFSPWLAQGCLSVRQIMAAL-RAYETEFGENESSY--WISFE 287
Query: 263 LIWRDFY-------QMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPL 315
L+WR+++ L+ + + KS K + Y+++ F WC G T YP+
Sbjct: 288 LLWREYFFWYALKHGKRLFAFSGLSGKSPKTSF---------YSER-FQKWCSGNTPYPI 337
Query: 316 IDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWS 375
+++ + QLN++GYM NR R + AS + + ++W++G YF +L D+D++SN GNWQ+
Sbjct: 338 VNACMKQLNATGYMSNRGRQLVASCFVHELSLDWRYGAAYFEQQLIDYDVSSNWGNWQYL 397
Query: 376 ASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLS 413
A G + R FN Q++++D FI ++ LS
Sbjct: 398 AGVGADPRG-HRQFNLEKQTERYDPDNEFIERWAGDLS 434
>sp|Q4I1Q6|CRYD_GIBZE Putative cryptochrome DASH OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=FGSG_08852 PE=3
SV=1
Length = 678
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 116/458 (25%), Positives = 190/458 (41%), Gaps = 63/458 (13%)
Query: 27 RIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLN-----IDAVMINHDYEPQ 81
R +F + I ++ N +N S ++IR +K L+ LN ID V + + +
Sbjct: 78 RAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLNEDHQSIDTVWMTEEPSKE 137
Query: 82 AIIRDKLIKKELKVIGCKFFSYKDQVIF--EKNEILNKTG--------KPYSIFSFYQKK 131
+ + G F + D+ F EK + + + S+ SF
Sbjct: 138 ELDDQTAVASVCSKEGIGFKLWHDEKYFIDEKTQEPLRERPRPPLPRPQAGSLPSF--PS 195
Query: 132 WIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGA 191
WI Q P + + L + + IIS + F + S+ K G
Sbjct: 196 WIPP--------QQAPFRIPDDYDEFERLLLEPVKAPIIS-DPPQFPEGAKSAHPFKGGE 246
Query: 192 SGAKILLNNFIKK--IKNYNINRNYPSINGTSY---LSIHLRFGTISIRKLVKLIFKF-- 244
+ A L + IK + Y RN + GT Y LS L GTI+ R + + KF
Sbjct: 247 TPAWDRLYHLIKSGAMTTYQETRN--GLLGTEYSTKLSAFLAMGTITARSIHAELVKFED 304
Query: 245 -IKKHY-------KTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNK--SFKKEYDNIL-- 292
++ Y K + G +L+WRD+ ++ + + + K FK N
Sbjct: 305 GSEESYSRGFGFGKGENEGTRAVRFELLWRDYMRLCTFKFRTRLFKIDGFKGASGNYTKK 364
Query: 293 W----ESDNYAKKNFL---------NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTAS 339
W E D +N W +G TG L+D++ +L +GY NR R AS
Sbjct: 365 WLTDREEDAEPDQNPTPAQVKDMIDRWIRGTTGMGLVDASQRELQLTGYTSNRARQNVAS 424
Query: 340 FLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFD 399
+L K++GI+W+ G Y+ L D+D SN GNWQ+ AS C + P R FN + Q+ +D
Sbjct: 425 YLTKSLGIDWRLGAEYYEQSLIDYDTHSNWGNWQYQAS--CGNDPRSRSFNQVKQAFDYD 482
Query: 400 YQGIFIRKYLPQLSKLSN-KYIHSPWKASSYKLEKAGI 436
G F R ++ ++ + +++ +LEK G+
Sbjct: 483 QDGRFTRTWVNEVKSIDRLEHVFQICTCPKQELEKHGL 520
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,125,195
Number of Sequences: 539616
Number of extensions: 7442718
Number of successful extensions: 19479
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 19224
Number of HSP's gapped (non-prelim): 183
length of query: 470
length of database: 191,569,459
effective HSP length: 121
effective length of query: 349
effective length of database: 126,275,923
effective search space: 44070297127
effective search space used: 44070297127
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)