Query psy14494
Match_columns 470
No_of_seqs 203 out of 1537
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 21:13:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fy4_A 6-4 photolyase; DNA rep 100.0 1E-119 4E-124 946.0 37.5 451 2-467 32-500 (537)
2 1u3d_A Cryptochrome 1 apoprote 100.0 3E-118 1E-122 938.6 39.7 445 2-466 38-494 (509)
3 3tvs_A Cryptochrome-1; circadi 100.0 1E-118 4E-123 941.1 35.1 456 1-468 33-516 (538)
4 1dnp_A DNA photolyase; DNA rep 100.0 2E-117 7E-122 922.2 38.6 434 2-465 29-469 (471)
5 2wq7_A RE11660P; lyase-DNA com 100.0 2E-117 8E-122 936.6 39.3 452 1-466 61-523 (543)
6 1owl_A Photolyase, deoxyribodi 100.0 2E-116 6E-121 919.6 40.8 439 2-465 30-473 (484)
7 1np7_A DNA photolyase; protein 100.0 4E-116 2E-120 918.7 40.9 442 2-462 33-485 (489)
8 2e0i_A 432AA long hypothetical 100.0 2E-113 6E-118 882.8 32.3 401 2-466 28-431 (440)
9 2j4d_A Cryptochrome 3, cryptoc 100.0 6E-111 2E-115 884.6 36.9 439 2-465 67-519 (525)
10 2j07_A Deoxyribodipyrimidine p 100.0 5E-109 2E-113 847.8 36.5 391 2-465 28-419 (420)
11 3umv_A Deoxyribodipyrimidine p 100.0 6.1E-89 2.1E-93 710.0 20.8 389 2-421 69-495 (506)
12 2xry_A Deoxyribodipyrimidine p 100.0 1E-86 3.6E-91 695.8 27.4 384 2-410 68-481 (482)
13 3zxs_A Cryptochrome B, rscryb; 100.0 2.6E-72 8.8E-77 576.7 18.0 386 24-452 58-480 (522)
14 3s3t_A Nucleotide-binding prot 81.4 9.6 0.00033 31.0 9.6 102 2-103 35-145 (146)
15 3dlo_A Universal stress protei 78.2 19 0.00065 29.9 10.6 67 2-76 55-125 (155)
16 1jmv_A USPA, universal stress 73.6 22 0.00076 28.5 9.6 66 38-104 69-137 (141)
17 3fdx_A Putative filament prote 68.5 35 0.0012 27.3 9.7 74 30-103 63-142 (143)
18 1tq8_A Hypothetical protein RV 67.7 35 0.0012 28.5 9.8 73 32-104 80-157 (163)
19 3fvv_A Uncharacterized protein 67.5 16 0.00056 32.0 8.0 66 32-97 94-172 (232)
20 3fg9_A Protein of universal st 66.8 19 0.00066 29.6 7.9 102 2-103 47-155 (156)
21 2dum_A Hypothetical protein PH 65.5 27 0.00093 29.1 8.7 74 31-104 76-155 (170)
22 3tnj_A Universal stress protei 65.0 40 0.0014 27.2 9.5 73 32-104 73-146 (150)
23 3hgm_A Universal stress protei 64.9 31 0.001 27.8 8.7 49 29-77 66-119 (147)
24 1mjh_A Protein (ATP-binding do 57.8 21 0.00073 29.5 6.5 74 31-104 81-158 (162)
25 3olq_A Universal stress protei 55.4 1.3E+02 0.0044 27.7 13.8 76 31-106 226-306 (319)
26 2gm3_A Unknown protein; AT3G01 53.3 53 0.0018 27.4 8.4 73 32-104 86-162 (175)
27 2iel_A Hypothetical protein TT 52.0 49 0.0017 27.3 7.3 72 32-103 57-133 (138)
28 2gvs_A Chemosensory protein CS 51.7 4.4 0.00015 32.3 0.9 23 394-416 86-108 (109)
29 3qe9_Y Exonuclease 1; exonucle 50.6 33 0.0011 33.2 7.2 11 3-13 71-81 (352)
30 2lnd_A De novo designed protei 50.4 25 0.00086 26.0 4.7 62 32-97 37-103 (112)
31 1b43_A Protein (FEN-1); nuclea 48.8 45 0.0015 32.0 7.9 44 32-75 129-172 (340)
32 1uqr_A 3-dehydroquinate dehydr 48.8 1.2E+02 0.0041 25.5 9.9 73 37-113 34-109 (154)
33 3ory_A Flap endonuclease 1; hy 45.4 34 0.0012 33.3 6.4 40 35-74 146-185 (363)
34 3q8k_A Flap endonuclease 1; he 45.3 31 0.001 33.3 6.0 43 32-74 134-176 (341)
35 3i8o_A KH domain-containing pr 45.2 1.2E+02 0.004 25.2 8.7 70 24-104 49-131 (142)
36 3loq_A Universal stress protei 44.5 1.8E+02 0.0063 26.3 11.3 76 29-106 82-163 (294)
37 3idf_A USP-like protein; unive 43.2 51 0.0017 26.1 6.4 45 30-76 63-109 (138)
38 2nyt_A Probable C->U-editing e 43.1 38 0.0013 29.7 5.7 74 28-103 67-145 (190)
39 3l49_A ABC sugar (ribose) tran 43.0 1.2E+02 0.004 27.4 9.6 73 29-106 18-95 (291)
40 3mmz_A Putative HAD family hyd 42.2 24 0.00084 30.0 4.4 54 38-98 47-100 (176)
41 3kip_A 3-dehydroquinase, type 42.2 1.1E+02 0.0039 25.9 8.2 68 43-114 55-126 (167)
42 3h75_A Periplasmic sugar-bindi 41.8 1.2E+02 0.0043 28.3 9.9 72 30-106 18-95 (350)
43 3loq_A Universal stress protei 40.5 1.2E+02 0.0041 27.6 9.3 72 33-104 214-289 (294)
44 3n07_A 3-deoxy-D-manno-octulos 40.2 23 0.0008 30.9 4.0 53 40-98 62-114 (195)
45 3ij5_A 3-deoxy-D-manno-octulos 39.4 22 0.00075 31.6 3.7 55 38-98 84-138 (211)
46 1q77_A Hypothetical protein AQ 39.1 77 0.0026 25.0 6.8 63 32-102 71-136 (138)
47 1gtz_A 3-dehydroquinate dehydr 39.0 1.7E+02 0.006 24.5 9.3 74 36-113 38-115 (156)
48 3u80_A 3-dehydroquinate dehydr 38.9 90 0.0031 26.2 7.0 79 33-112 29-114 (151)
49 3mn1_A Probable YRBI family ph 38.3 28 0.00095 30.0 4.1 55 38-98 54-108 (189)
50 2p9j_A Hypothetical protein AQ 37.0 1.1E+02 0.0037 25.0 7.6 57 37-99 43-99 (162)
51 4gxt_A A conserved functionall 36.9 20 0.00068 35.3 3.2 45 31-75 222-272 (385)
52 3mt0_A Uncharacterized protein 36.7 1.4E+02 0.0047 27.2 9.1 68 36-103 202-274 (290)
53 1gqo_A Dehydroquinase; dehydra 36.6 1.2E+02 0.004 25.2 7.3 74 37-114 33-109 (143)
54 3rjz_A N-type ATP pyrophosphat 36.6 41 0.0014 30.6 5.1 64 35-101 52-120 (237)
55 2l69_A Rossmann 2X3 fold prote 36.2 84 0.0029 23.9 5.8 44 33-76 13-58 (134)
56 3jy6_A Transcriptional regulat 35.4 2.2E+02 0.0075 25.3 10.2 69 30-105 21-93 (276)
57 3qk7_A Transcriptional regulat 34.0 1.3E+02 0.0043 27.4 8.3 72 29-106 23-97 (294)
58 3nvb_A Uncharacterized protein 33.8 94 0.0032 30.4 7.5 64 30-99 256-327 (387)
59 4eze_A Haloacid dehalogenase-l 33.6 1.2E+02 0.004 28.6 8.0 44 33-76 182-225 (317)
60 3n1u_A Hydrolase, HAD superfam 31.8 83 0.0028 26.9 6.2 53 40-98 56-108 (191)
61 3lwz_A 3-dehydroquinate dehydr 31.4 2.3E+02 0.0079 23.7 8.9 72 38-113 41-115 (153)
62 3p6l_A Sugar phosphate isomera 31.3 1.7E+02 0.0057 26.1 8.6 64 33-101 63-132 (262)
63 1h05_A 3-dehydroquinate dehydr 30.9 1.2E+02 0.0042 25.1 6.5 75 36-114 34-111 (146)
64 3n8k_A 3-dehydroquinate dehydr 30.9 1.5E+02 0.0053 25.2 7.2 73 38-114 62-137 (172)
65 1sur_A PAPS reductase; assimil 30.3 1.6E+02 0.0055 25.6 8.0 70 33-104 31-104 (215)
66 2r8e_A 3-deoxy-D-manno-octulos 30.3 58 0.002 27.8 4.9 55 38-98 61-115 (188)
67 3lmz_A Putative sugar isomeras 30.1 1.3E+02 0.0043 26.9 7.4 64 33-101 61-130 (257)
68 3tva_A Xylose isomerase domain 30.0 2.1E+02 0.0071 25.9 9.1 71 32-102 50-157 (290)
69 3v7e_A Ribosome-associated pro 29.9 1.1E+02 0.0037 22.5 5.6 40 63-105 22-61 (82)
70 2z08_A Universal stress protei 29.2 1.2E+02 0.0041 23.8 6.5 30 48-77 79-108 (137)
71 3kzx_A HAD-superfamily hydrola 29.2 62 0.0021 28.0 5.0 45 34-78 107-155 (231)
72 3n28_A Phosphoserine phosphata 28.2 1.5E+02 0.0053 27.6 8.0 42 34-75 182-223 (335)
73 2drn_C 24-residues peptide fro 28.0 26 0.00088 19.7 1.3 17 312-328 7-23 (26)
74 3p96_A Phosphoserine phosphata 27.3 1.2E+02 0.004 29.6 7.1 43 33-75 259-301 (415)
75 3gv0_A Transcriptional regulat 26.9 1.7E+02 0.0058 26.3 7.8 72 29-106 23-98 (288)
76 3e8m_A Acylneuraminate cytidyl 25.6 56 0.0019 26.8 3.8 38 39-76 40-77 (164)
77 3e61_A Putative transcriptiona 25.3 2.4E+02 0.0083 24.9 8.5 71 29-106 21-95 (277)
78 1k19_A Chemosensory protein CS 25.2 15 0.0005 29.4 -0.1 21 394-414 84-104 (112)
79 3gkn_A Bacterioferritin comigr 25.2 1E+02 0.0034 25.1 5.4 40 31-70 54-93 (163)
80 3l8h_A Putative haloacid dehal 25.0 66 0.0023 26.8 4.2 26 32-57 29-54 (179)
81 3gi1_A LBP, laminin-binding pr 24.6 2.4E+02 0.0084 26.0 8.4 69 31-104 159-235 (286)
82 3uug_A Multiple sugar-binding 24.2 2.3E+02 0.0078 25.9 8.3 72 30-106 17-93 (330)
83 2yvq_A Carbamoyl-phosphate syn 24.0 2.8E+02 0.0095 22.6 7.8 69 33-101 37-129 (143)
84 2inf_A URO-D, UPD, uroporphyri 23.6 1.6E+02 0.0056 28.1 7.2 66 5-78 209-275 (359)
85 1k1e_A Deoxy-D-mannose-octulos 23.6 65 0.0022 27.2 3.9 37 38-74 43-79 (180)
86 2uyg_A 3-dehydroquinate dehydr 23.6 3.2E+02 0.011 22.7 10.4 74 37-114 32-109 (149)
87 8abp_A L-arabinose-binding pro 23.5 1.7E+02 0.006 26.3 7.2 72 30-106 16-91 (306)
88 3egc_A Putative ribose operon 23.1 1.6E+02 0.0056 26.4 6.9 72 29-106 21-96 (291)
89 3k4h_A Putative transcriptiona 22.6 2.4E+02 0.0081 25.2 7.9 71 30-106 27-101 (292)
90 3dx5_A Uncharacterized protein 22.5 3.4E+02 0.012 24.2 9.0 70 33-102 48-141 (286)
91 2c4w_A 3-dehydroquinate dehydr 22.3 2.3E+02 0.0077 24.3 6.8 73 38-114 43-121 (176)
92 3sd7_A Putative phosphatase; s 22.2 1.1E+02 0.0036 26.7 5.2 65 34-99 114-182 (240)
93 1vp8_A Hypothetical protein AF 22.1 77 0.0026 27.8 3.9 68 33-102 30-103 (201)
94 3dbi_A Sugar-binding transcrip 21.8 4.2E+02 0.014 24.2 9.8 70 30-105 77-151 (338)
95 1ul1_X Flap endonuclease-1; pr 21.8 68 0.0023 31.3 4.0 41 35-75 137-177 (379)
96 3cx3_A Lipoprotein; zinc-bindi 21.5 3.1E+02 0.011 25.1 8.5 69 31-104 157-233 (284)
97 3hcw_A Maltose operon transcri 21.5 2.9E+02 0.01 24.8 8.4 71 29-105 25-99 (295)
98 3l6u_A ABC-type sugar transpor 21.4 1.7E+02 0.0059 26.2 6.7 73 29-106 21-98 (293)
99 1a76_A Flap endonuclease-1 pro 21.2 76 0.0026 30.1 4.2 42 34-75 131-172 (326)
100 4as2_A Phosphorylcholine phosp 21.2 51 0.0018 31.5 2.9 44 32-75 145-194 (327)
101 4fe3_A Cytosolic 5'-nucleotida 21.0 93 0.0032 28.7 4.7 15 63-77 152-166 (297)
102 3lgb_A DNA primase large subun 20.8 1.8E+02 0.0061 25.4 6.0 45 314-359 20-64 (194)
103 3huu_A Transcription regulator 20.6 2.5E+02 0.0085 25.4 7.6 74 28-107 39-116 (305)
104 2nyv_A Pgpase, PGP, phosphogly 20.5 1.3E+02 0.0045 25.9 5.4 29 40-68 93-121 (222)
105 3ixr_A Bacterioferritin comigr 20.5 1.2E+02 0.004 25.6 4.9 39 32-70 71-109 (179)
106 2q02_A Putative cytoplasmic pr 20.5 3.7E+02 0.013 23.6 8.8 68 33-100 51-136 (272)
107 3ksm_A ABC-type sugar transpor 20.5 1.5E+02 0.0052 26.2 6.0 73 30-106 14-93 (276)
108 1pq4_A Periplasmic binding pro 20.5 89 0.0031 29.1 4.4 79 25-107 164-247 (291)
109 3rfu_A Copper efflux ATPase; a 20.4 1.2E+02 0.0043 32.3 6.0 42 40-83 564-605 (736)
110 1tp9_A Peroxiredoxin, PRX D (t 20.3 2E+02 0.0067 23.5 6.2 38 32-69 56-94 (162)
111 3mc1_A Predicted phosphatase, 20.2 1.1E+02 0.0037 26.1 4.8 65 34-99 90-158 (226)
112 3iht_A S-adenosyl-L-methionine 20.2 1.5E+02 0.0052 25.1 5.1 42 53-94 89-130 (174)
113 3k9c_A Transcriptional regulat 20.0 3.6E+02 0.012 24.1 8.6 69 30-106 25-97 (289)
114 2eja_A URO-D, UPD, uroporphyri 20.0 3.1E+02 0.011 25.7 8.3 67 5-79 195-263 (338)
No 1
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-119 Score=945.99 Aligned_cols=451 Identities=28% Similarity=0.447 Sum_probs=394.7
Q ss_pred cEEEEEEecCCCCCcc---------ccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEE
Q psy14494 2 EVYCVFIFDKNILDPL---------RSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAV 72 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~~---------~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V 72 (470)
|||||||+||.++..+ .. |++|++||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|
T Consensus 32 ~vlpvfi~dp~~~~~~~~~~~~g~~~~----g~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V 107 (537)
T 3fy4_A 32 FMYPVFVIDPHYMESDPSAFSPGSSRA----GVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRL 107 (537)
T ss_dssp CEEEEEEECHHHHSCCTTSSSSBCSSC----BHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHTTSCEEEE
T ss_pred CEEEEEEeChhhhcccccccccccccC----CHHHHHHHHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHcCCCEE
Confidence 7999999999887642 24 9999999999999999999999999999999999999999999999999
Q ss_pred EEeccCChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcccccC-CCCCccchHHHHHHHHHhhcccccCCCCCcccc
Q psy14494 73 MINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT-GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSY 151 (470)
Q Consensus 73 ~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~~~~-g~~~~vft~F~k~~~~~~~~~~~~~~~~~~~~~ 151 (470)
++|++|++++++||++|+++|++.||+++.+++++|++|+++.++. |++|+|||||+|+|++..... .+. .+.|..
T Consensus 108 ~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~y~vftpf~k~~~~~~~~~--~p~-~~~p~~ 184 (537)
T 3fy4_A 108 CFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAK--SEL-VMSYSS 184 (537)
T ss_dssp EECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCSSHHHHHHHHCCCTTTT--CCC-CCCCSC
T ss_pred EEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCCCCccCHHHHHHHhhcCCc--CCC-CCcccc
Confidence 9999999999999999999999999999999999999999998554 679999999999997642111 010 111111
Q ss_pred cccccccchhhhhccCcCCCcccCCCCcCCC-CCCCCCccHHHHHHHHHHHHH---HhhcccccCCCCC---CCCCCccc
Q psy14494 152 LNNLVHSSKLHKIINNNIISLNDLGFCKSNL-SSLGIKTGASGAKILLNNFIK---KIKNYNINRNYPS---INGTSYLS 224 (470)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~gGe~~A~~~L~~Fl~---~l~~Y~~~r~~p~---~~~tS~LS 224 (470)
++..+....+....+|+++++++..... ....|+|||++|+++|++|++ .+.+|++.||.|+ .++||+||
T Consensus 185 ---~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~rd~p~~~~~~~tS~LS 261 (537)
T 3fy4_A 185 ---LPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMS 261 (537)
T ss_dssp ---CCCCCCCCSSCCCCCCCTTTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHHHHHTCCGGGCCTTCCSSCSSCCCH
T ss_pred ---CCCcccccccccccCCcHHhcCCCcccccccCCCCccHHHHHHHHHHHHhCchHHhhhcccccCccccCCCCCccCC
Confidence 1110000001123467777777754221 123589999999999999996 4999999999996 58999999
Q ss_pred HhhhcCCccHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHhCCcccccccchhhccCCCCCchhhhHHHh
Q psy14494 225 IHLRFGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFL 304 (470)
Q Consensus 225 pyL~~G~iS~R~v~~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~d~~~~~~~~ 304 (470)
|||+|||||||+|++++.+..... ....++.++|++||+|||||+++++++|++...++++.++.++|++|+ +.|+
T Consensus 262 pyL~~G~lS~r~v~~~~~~~~~~~-~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~---~~~~ 337 (537)
T 3fy4_A 262 PYLKFGCLSSRYFYQCLQNIYKDV-KKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNEDH---AMLA 337 (537)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTT-SCCCCTTTSHHHHHHHHHHHHHHHHTCTTTTSSTTCTTSCCCCCBCCH---HHHH
T ss_pred HHHhCCCcCHHHHHHHHHHHHhhc-ccccccHHHHHHHHHHHHHHHHHHHHCcchhcccCChhhhcCCchhhh---HHHH
Confidence 999999999999999998754221 122456678999999999999999999999888999999999999998 8999
Q ss_pred hhhcCCCCchHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCC
Q psy14494 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQ 383 (470)
Q Consensus 305 ~w~~G~TG~p~vDA~mrqL~~tG~mhnr~Rm~~asfl~k-~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~ 383 (470)
+|++|+|||||||||||||++|||||||+|||||||||| +|+|||++|++||+++|||||+|||+|||||+||||+|++
T Consensus 338 aW~~G~TG~P~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~liD~D~a~n~g~Wqw~ag~g~d~~ 417 (537)
T 3fy4_A 338 AWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ 417 (537)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCC
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHccccccccChHhhhhhcccCCCcc
Confidence 999999999999999999999999999999999999997 9999999999999999999999999999999999999987
Q ss_pred CcccccChhhhhhhcCCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHHH
Q psy14494 384 PFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFI 463 (470)
Q Consensus 384 p~~R~~np~~q~~k~Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~~ 463 (470)
|||||||++|++||||+|+|||+|||||+++|+++||+||+++..+|+++||.+|.+||.|||||+++|++|+++|++.
T Consensus 418 -~fRifNP~~Q~~kfDp~G~yIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~g~~~g~~YP~PIVdh~~ar~~a~~~~~~~ 496 (537)
T 3fy4_A 418 -FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEA 496 (537)
T ss_dssp -TTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTTTTTCGGGSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHH
T ss_pred -cccccCHHHHHHHhCCCchHHHHhCHhhcCCCHHhhCCcccCCHHHHHhcCCccCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHh
Q psy14494 464 KNIL 467 (470)
Q Consensus 464 ~~~~ 467 (470)
.+..
T Consensus 497 ~~~~ 500 (537)
T 3fy4_A 497 YALN 500 (537)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 2
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=3.2e-118 Score=938.64 Aligned_cols=445 Identities=26% Similarity=0.470 Sum_probs=391.5
Q ss_pred cEEEEEEecCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEE-cChHHHHHHHHHhcCcCEEEEeccCCh
Q psy14494 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRY-AIASKEIKKLVIKLNIDAVMINHDYEP 80 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~-g~~~~~l~~L~~~~~~~~V~~~~~~~~ 80 (470)
+|+||||+||.++..+.. +..+..||++||++|+++|+++|++|+|+. |++.++|.+|+++++|++|++|++|+|
T Consensus 38 ~v~pvfi~dp~~~~~~~~----~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p 113 (509)
T 1u3d_A 38 PVIALFVWAPEEEGHYHP----GRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDP 113 (509)
T ss_dssp CEEEEEEECGGGGTTCCC----CHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHHHTCCEEEEECCCSH
T ss_pred CEEEEEEECchhcccCCc----chHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHcCCCEEEEecccCH
Confidence 689999999988765444 777777999999999999999999999998 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcccccCCCCCccchHHHHHHHHHhhcccccCCCCCcccccccccccch
Q psy14494 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSK 160 (470)
Q Consensus 81 ~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~~~~g~~~~vft~F~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (470)
.+.+||++|+++|++.||+++.+++++|++|+++.++.|++|.|||+|+++|.+.+..+ +.+.+.|.. +.. +.
T Consensus 114 ~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftpf~r~~~~~~~~~---~~~~~~p~~---~~~-~~ 186 (509)
T 1u3d_A 114 LSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDP---ESPLLPPKK---IIS-GD 186 (509)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHHTCSSCC---CCCCCCCSC---CCB-TT
T ss_pred HHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHHHHHHHHhccCCC---CCCCCCccc---cCc-cc
Confidence 99999999999999999999999999999999999999999999999999987642111 112222211 100 00
Q ss_pred hhhhccCcCCCcccCCCCcCC----CC--CCCCCccHHHHHHHHHHHHH-HhhcccccCCCCCCCCCCcccHhhhcCCcc
Q psy14494 161 LHKIINNNIISLNDLGFCKSN----LS--SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTIS 233 (470)
Q Consensus 161 ~~~~~~~~~~~l~~l~~~~~~----~~--~~~~~gGe~~A~~~L~~Fl~-~l~~Y~~~r~~p~~~~tS~LSpyL~~G~iS 233 (470)
...++++.+++.+.. .. ...|+|||++|+++|++|++ ++.+|+..||.|+.++||+|||||+|||||
T Consensus 187 ------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~Rd~p~~~~tS~LSPyL~~G~LS 260 (509)
T 1u3d_A 187 ------VSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVS 260 (509)
T ss_dssp ------GGGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTSCCCHHHHHTTSSC
T ss_pred ------cCCCChhHhCCCcccccchhhhccccCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChhhccCCCC
Confidence 011234455544210 00 12389999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh----hhcccCCcchHHHHHHHHHHHHHHHHHHhCCcccccccchhhccCCCCCchhhhHHHhhhhcC
Q psy14494 234 IRKLVKLIFKFIK----KHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKG 309 (470)
Q Consensus 234 ~R~v~~~~~~~~~----~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~d~~~~~~~~~w~~G 309 (470)
||+|++++.+... .....+.++.+.|++||+||||++++++++|++...++.+.++.++|.+|+ +.|++|++|
T Consensus 261 pR~v~~~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~~~~~~p~~~~~~~~~~~~~lpW~~d~---~~~~aW~~G 337 (509)
T 1u3d_A 261 VRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDE---NYFKAWRQG 337 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCH---HHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhCccccccchhhhhccCCCcCCh---HHHHHHHcC
Confidence 9999999976421 010012346778999999999999999999998888888889999999998 899999999
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCCCccccc
Q psy14494 310 YTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIF 389 (470)
Q Consensus 310 ~TG~p~vDA~mrqL~~tG~mhnr~Rm~~asfl~k~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~p~~R~~ 389 (470)
+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+|||+|||||+||+|+|++||||||
T Consensus 338 ~TG~P~VDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~G~~~F~~~liD~D~a~n~g~wqw~ag~g~d~~py~Rif 417 (509)
T 1u3d_A 338 RTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417 (509)
T ss_dssp CSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCC
T ss_pred CCCCHhHHHHHHHHHHhCCccHHHHHHHHHHHHHccCCCchHHHHHHHHHhccCCcccchHHHHHHhcCCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhcCCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy14494 390 NPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466 (470)
Q Consensus 390 np~~q~~k~Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~~~~~ 466 (470)
||++|++||||+|+|||||||||+++|+++||+||+++..+++++||.+|.+||.|||||+++|++|+++|+++++.
T Consensus 418 NP~~Q~~kfDp~G~yIrrwvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~~ 494 (509)
T 1u3d_A 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 494 (509)
T ss_dssp CHHHHHHHHCTTSHHHHHHCGGGTTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCCchhHHHhCHHhhccccccccCcccCChHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998863
No 3
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=1.1e-118 Score=941.10 Aligned_cols=456 Identities=22% Similarity=0.386 Sum_probs=397.5
Q ss_pred CcEEEEEEecCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHhcC---CCcEEEEEcChHHHHHHHHHhcCcCEEEEecc
Q psy14494 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNY---DSDLIIRYAIASKEIKKLVIKLNIDAVMINHD 77 (470)
Q Consensus 1 ~~vl~vfi~dp~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~---G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~ 77 (470)
+|||||||+||+++..+.. |++|++||++||.+|+++|+++ |++|+|+.|++.++|.+|+++++|++|++|++
T Consensus 33 ~~vl~vfi~dp~~~~~~~~----~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~~ 108 (538)
T 3tvs_A 33 IALIPVFIFDGESAGTKNV----GYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQD 108 (538)
T ss_dssp CBCCEEEEECSSSSCSTTC----CHHHHHHHHHHHHHHHHHGGGSCSSSSCCEEEESCHHHHHHHHHHHHCEEEECEECC
T ss_pred CCEEEEEecChhhhccCCC----CHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEccC
Confidence 3899999999999876666 9999999999999999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcccccC-CCCCccchHHHHHHHHHhhcccccCCCCCcccc--ccc
Q psy14494 78 YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKT-GKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSY--LNN 154 (470)
Q Consensus 78 ~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~~~~-g~~~~vft~F~k~~~~~~~~~~~~~~~~~~~~~--~~~ 154 (470)
|++++++||++|+++|++.||+++++++++|++|+++.+++ |.+|.|||+|++++++. ..+ +.|.+.|.. ...
T Consensus 109 ~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~f~~~~~~~-~~~---~~p~~~p~~~~~~~ 184 (538)
T 3tvs_A 109 CEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQII-GLP---PRPTADARLEDATF 184 (538)
T ss_dssp CCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCSHHHHHHHHTTT-TCS---SCCCCCCCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChhhcccCCCCCCCcchHHHHHHHHhh-CCC---CCCCCCcccccccc
Confidence 99999999999999999999999999999999999998776 56899999999888653 221 222233311 100
Q ss_pred ccccchhhhhc---cCcCCCcccCCCCcCCC---CCCCCCccHHHHHHHHHHHHH-----HhhcccccCCCCC--CCCCC
Q psy14494 155 LVHSSKLHKII---NNNIISLNDLGFCKSNL---SSLGIKTGASGAKILLNNFIK-----KIKNYNINRNYPS--INGTS 221 (470)
Q Consensus 155 ~~~~~~~~~~~---~~~~~~l~~l~~~~~~~---~~~~~~gGe~~A~~~L~~Fl~-----~l~~Y~~~r~~p~--~~~tS 221 (470)
...|...... ...+|+++++++.+... ....|+|||++|+++|++|++ .+.+|++.||.|. .++||
T Consensus 185 -~~~p~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~~~l~~y~~~r~~~~~~~~~tS 263 (538)
T 3tvs_A 185 -VELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPK 263 (538)
T ss_dssp -CCCCTTTTTTSCCBSSCCCTTTTSCCCCCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCCTTTTSCCSSCCSC
T ss_pred -ccCCcccccccccccCCCCHHHcCCCcccccccccCCCCCCHHHHHHHHHHHHHhhhhhhHhhhcccccCcccccCCCc
Confidence 0111100000 02457777787765332 234589999999999999993 2899999999875 57999
Q ss_pred cccHhhhcCCccHHHHHHHHHHHhhhhccc------CCcchHHHHHHHHHHHHHHHHHHhCCcccccccchhhccCCCCC
Q psy14494 222 YLSIHLRFGTISIRKLVKLIFKFIKKHYKT------DCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWES 295 (470)
Q Consensus 222 ~LSpyL~~G~iS~R~v~~~~~~~~~~~~~~------~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~ 295 (470)
+|||||+|||||||+|++++.+........ ...+.++|++||+|||||+++++++|++...++++.++.++|.+
T Consensus 264 ~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~ 343 (538)
T 3tvs_A 264 SMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAK 343 (538)
T ss_dssp CCHHHHHTTSSCHHHHHHHHHHHTCSSSCCCCCSSSCCTTTTTTHHHHHHHHHHHHHHHHSSCTTSSSSCSSCCCCCCCC
T ss_pred CCCHHHhCCCcCHHHHHHHHHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHHhCcchhhccCChhhhcCCccc
Confidence 999999999999999999998753211000 12455789999999999999999999998888999999999987
Q ss_pred -chhhhHHHhhhhcCCCCchHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hcCCCChHHHHHHHHhccccCCCCCcchhh
Q psy14494 296 -DNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NMGINWKWGENYFANKLNDFDLASNNGNWQ 373 (470)
Q Consensus 296 -d~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~Rm~~asfl~k-~L~idW~~g~~~F~~~LiD~d~a~n~~~wq 373 (470)
|+ +.|++|++|+|||||||||||||++|||||||+|||||||||| +|+|||+.|++||+++|||||+|||+||||
T Consensus 344 ~~~---~~~~aW~~G~TG~P~VDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~llD~D~a~n~g~Wq 420 (538)
T 3tvs_A 344 PNE---NLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWM 420 (538)
T ss_dssp CCS---SHHHHHHTTCSSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred cCH---HHHHHHHhCCCCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhhhCCCchHHHHHHHHHcccCchhhchhhhh
Confidence 77 7899999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhhccCCC-CCCcccccChhhhhhhcCCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHH
Q psy14494 374 WSASSGCS-SQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLS 452 (470)
Q Consensus 374 w~ag~G~d-~~p~~R~~np~~q~~k~Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~ 452 (470)
|+||||+| +.||||||||++|++||||+|+|||||||||+++|+++||+||+++..+|+++||.+|.+||.|||||+++
T Consensus 421 w~ag~g~Dd~~pyfRifNP~~Q~~kfDp~G~YIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVdh~~a 500 (538)
T 3tvs_A 421 WVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMA 500 (538)
T ss_dssp HHSCCCSSCCCTHHHHCSTTTHHHHSCTTCTTGGGTCGGGSSSCCSSCCSHHHHHTTHHHHSSCCSSSSSCCCSSCSHHH
T ss_pred hhhcCCCcCCCCceeeeCHHHHHHHhCCCcchHHHhChhhcCCCHHhhcCcccCCHHHHHHcCCccCCCCCCCCCCHHHH
Confidence 99999994 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14494 453 KKNILKRYNFIKNILN 468 (470)
Q Consensus 453 ~~~~~~~~~~~~~~~~ 468 (470)
|++|+++|+++++.+.
T Consensus 501 r~~al~~~~~~~~~~~ 516 (538)
T 3tvs_A 501 VKRNMLAMKSLRNSLI 516 (538)
T ss_dssp HHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999887654
No 4
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=1.9e-117 Score=922.17 Aligned_cols=434 Identities=31% Similarity=0.610 Sum_probs=384.5
Q ss_pred cEEEEEEecCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEE----EcChHHHHHHHHHhcCcCEEEEecc
Q psy14494 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIR----YAIASKEIKKLVIKLNIDAVMINHD 77 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~----~g~~~~~l~~L~~~~~~~~V~~~~~ 77 (470)
||+||||+||+++..... |.+|+.||++||++|+++|+++|++|+|+ .|++.++|.+|+++++|++|++|++
T Consensus 29 ~v~~vfi~dp~~~~~~~~----~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 29 RVLALYIATPRQWATHNM----SPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp EEEEEEEECHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CEEEEEEECchhhccCCC----CHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 799999999988765556 99999999999999999999999999999 8999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcccccCCCCCccchHHHHHHHHHhhcccccCCCCCcccccccccc
Q psy14494 78 YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVH 157 (470)
Q Consensus 78 ~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~~~~g~~~~vft~F~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (470)
|++++++||++|+++|++ |+++.+++++|++|+++.++.|++|+|||+|+++|++.+.+. .+.+.+.|.... .
T Consensus 105 ~~~~~~~rd~~v~~~l~~--i~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~~~l~~~--~p~~~~~p~~~~---~ 177 (471)
T 1dnp_A 105 YEVNERARDVEVERALRN--VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREG--MPECVAAPKVRS---S 177 (471)
T ss_dssp CSHHHHHHHHHHHHHCTT--SEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHHHHHHHHTC--CCCCCCCCCCCT---T
T ss_pred cCchHHHHHHHHHHHhcC--cEEEEecCCEEEchhhcccCCCCCCcchHHHHHHHHHhcccc--CCCCCCCccccC---c
Confidence 999999999999999965 999999999999999999999999999999999998876532 122233332111 0
Q ss_pred cchhhhhccCcCCCcccCCCCcCCCCCCCCCccHHHHHHHHHHHHH-HhhcccccCCCCCCCCCCcccHhhhcCCccHHH
Q psy14494 158 SSKLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRK 236 (470)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~gGe~~A~~~L~~Fl~-~l~~Y~~~r~~p~~~~tS~LSpyL~~G~iS~R~ 236 (470)
+. .....++. +++.........|+|||++|+++|++|++ ++.+|++.||.|+.++||+|||||+|||||||+
T Consensus 178 -~~---~~~~~~~~---l~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~rd~p~~~~tS~LSpyL~~G~lSpr~ 250 (471)
T 1dnp_A 178 -GS---IEPSPSIT---LNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQ 250 (471)
T ss_dssp -CC---CCCCCCCC---CCSCCCCCCTTTSCCSHHHHHHHHHHHHHTHHHHHHHHTTCTTSCCSCCCHHHHHHTSSCHHH
T ss_pred -cc---ccCCCCcc---cCCCccccccccCCCCHHHHHHHHHHHHHHHHHHhhhccCCcCccCCCCCCHhHcCCCcCHHH
Confidence 10 00111222 33322111123589999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCCcc-hHHHHHHHHHHHHHHHHHHhCCccccc-ccchhhccCCCCCchhhhHHHhhhhcCCCCch
Q psy14494 237 LVKLIFKFIKKHYKTDCIG-YFTWLSQLIWRDFYQMILYCYPNVVNK-SFKKEYDNILWESDNYAKKNFLNWCKGYTGYP 314 (470)
Q Consensus 237 v~~~~~~~~~~~~~~~~~~-~~~f~~eL~WRef~~~~~~~~p~~~~~-~~~~~~~~~~w~~d~~~~~~~~~w~~G~TG~p 314 (470)
|++++.+...+ ...++ .++|++||+|||||+++++++|++... ++++.++.++|++|+ ..|++|++|+||||
T Consensus 251 v~~~~~~~~~~---~~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~l~w~~d~---~~~~aW~~G~TG~P 324 (471)
T 1dnp_A 251 CLHRLLAEQPQ---ALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNP---AHLQAWQEGKTGYP 324 (471)
T ss_dssp HHHHHHHHCGG---GGGTSTTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGGSCCCCCH---HHHHHHHHTCSSCH
T ss_pred HHHHHHHHhcc---ccccccHHHHHHHHHHHHHHHHHHHhCCchhccCCcchhhhcCCCcCCH---HHHHHHHhCCCCCH
Confidence 99999875321 11346 789999999999999999999999887 999999999999998 89999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCCCcccccChhhh
Q psy14494 315 LIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQ 394 (470)
Q Consensus 315 ~vDA~mrqL~~tG~mhnr~Rm~~asfl~k~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~p~~R~~np~~q 394 (470)
|||||||||++|||||||+||+|||||||+|+|||+.|++||+++|||||+|||+|||||+||||+|++||||||||++|
T Consensus 325 ~vDAaMrqL~~tG~mHnr~RMivAsFL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~ag~G~d~~py~RifNp~~q 404 (471)
T 1dnp_A 325 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 404 (471)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCSTTCCCTTCCCCHHHH
T ss_pred HHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCchHHHHHHHHhccCCCcccCHHHHHhhcCCCCCCCCcceecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy14494 395 SKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465 (470)
Q Consensus 395 ~~k~Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~~~~ 465 (470)
++||||+|+|||||||||+++|+++||+||++ ++.+||.+ +||+|||||+++|++|+++|+++++
T Consensus 405 ~~kfDp~G~YIrrwvPeL~~~p~~~ih~Pw~~----~~~~~~~~--~YP~PiVd~~~~r~~al~~~~~~~~ 469 (471)
T 1dnp_A 405 GEKFDHEGEFIRQWLPELRDVPGKVVHEPWKW----AQKAGVTL--DYPQPIVEHKEARVQTLAAYEAARK 469 (471)
T ss_dssp HHHHTTTCHHHHHHCGGGTTSCTTGGGSHHHH----HHTTTCCC--SSCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCchhHHHhChhhccCChhhcCCchhh----HHhcCCCC--CCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999987 45678877 8999999999999999999998764
No 5
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=2.4e-117 Score=936.57 Aligned_cols=452 Identities=26% Similarity=0.435 Sum_probs=397.4
Q ss_pred CcEEEEEEecCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCCh
Q psy14494 1 MEVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEP 80 (470)
Q Consensus 1 ~~vl~vfi~dp~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~ 80 (470)
+||+||||+||.++..... +.+|+.||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|+++++|+|
T Consensus 61 ~pv~~vfi~dp~~~~~~~~----~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p 136 (543)
T 2wq7_A 61 YFVRPIFILDPGILDWMQV----GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 136 (543)
T ss_dssp EEEEEEEEECTTGGGCTTS----CHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHHHTTEEEEEEECCCSH
T ss_pred CeEEEEEEECchhhcccCC----CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEecCcCH
Confidence 3699999999998865556 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCccc-ccCCCCCccchHHHHHHHHHhhcccccCCCCCccccccccc-cc
Q psy14494 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEIL-NKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLV-HS 158 (470)
Q Consensus 81 ~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~-~~~g~~~~vft~F~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (470)
.++.||+.|+++|++.||+++.+++++|++|+++. +..|++|.|||+|+++|++. ..+ . |.+.|....... +.
T Consensus 137 ~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vft~F~~~~~~~-~~~---~-p~~~p~~~~~~~~p~ 211 (543)
T 2wq7_A 137 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQL-KVP---K-VLGVPEKLKNMPTPP 211 (543)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSHHHHHHHHTTS-CCC---C-CCCCCCCCSSCCCCC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCEEECccccccccCCCCCccHHHHHHHHHHc-cCC---C-CCCcchhcccccccc
Confidence 99999999999999999999999999999999844 46689999999999998653 221 1 233332111110 00
Q ss_pred chhhh---hccCcCCCcccCCCCcCCCCCCCCCccHHHHHHHHHHHHH-H--hhcccccCCCCCC--CCCCcccHhhhcC
Q psy14494 159 SKLHK---IINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-K--IKNYNINRNYPSI--NGTSYLSIHLRFG 230 (470)
Q Consensus 159 ~~~~~---~~~~~~~~l~~l~~~~~~~~~~~~~gGe~~A~~~L~~Fl~-~--l~~Y~~~r~~p~~--~~tS~LSpyL~~G 230 (470)
+.... +....+|.+++++++........|+|||++|+++|++|++ + +.+|++.||.|+. ++||+|||||+||
T Consensus 212 ~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G 291 (543)
T 2wq7_A 212 KDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFG 291 (543)
T ss_dssp CCHHHHHCTTTTSCCCHHHHCSCGGGCCCCCSCCSHHHHHHHHHHHHTCHHHHHHCCGGGSCSSCSSCSSCCCHHHHHHT
T ss_pred ccccccccccccCCCCHHHcCCCccccccCCCCCCHHHHHHHHHHHHhCChhhhhhcccccCccccccCCCCcCHhHhCC
Confidence 00000 0013456676676654322234589999999999999999 8 9999999999974 9999999999999
Q ss_pred CccHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHhCCcccccccchhhccCCCCCchhhhHHHhhhhcCC
Q psy14494 231 TISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGY 310 (470)
Q Consensus 231 ~iS~R~v~~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~d~~~~~~~~~w~~G~ 310 (470)
|||||+|++++.+...+. ....++.+.|++||+|||||+++++++|++...++++.++.++|++++ +.|++|++|+
T Consensus 292 ~LSpR~v~~~~~~~~~~~-~~~~~~~~~f~~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~~w~~~~---~~~~aW~~G~ 367 (543)
T 2wq7_A 292 CLSARLFNQKLKEIIKRQ-PKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHP---DHLEAWTHGR 367 (543)
T ss_dssp SSCHHHHHHHHHHHHHHC-SSCCCTTTSHHHHHHHHHHHHHHHHTCTTTTSSTTCTTCCCCCCCCCH---HHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhcc-ccccccHHHHHHHHHHHHHHHHHHHhCCccccccCChHhhcCCCccCH---HHHHHHHcCC
Confidence 999999999998753321 123456778999999999999999999999988899999999999988 8899999999
Q ss_pred CCchHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCCCccccc
Q psy14494 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIK-NMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIF 389 (470)
Q Consensus 311 TG~p~vDA~mrqL~~tG~mhnr~Rm~~asfl~k-~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~p~~R~~ 389 (470)
|||||||||||||++|||||||+|||||||||| +|+|||++|++||+++|||||+|||+|||||+||||+|++ |||||
T Consensus 368 TG~P~VDAaMrqL~~tG~mHnr~Rm~vASFL~kg~L~idWr~G~~~F~~~LiD~D~a~n~g~Wqw~aG~g~D~~-~~Rif 446 (543)
T 2wq7_A 368 TGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFRVY 446 (543)
T ss_dssp SSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCC-TTCCC
T ss_pred CCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhCCCCchHHHHHHHHhccCCcccCHHHHHHHhcCCCcCc-ccccc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999988 99999
Q ss_pred ChhhhhhhcCCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy14494 390 NPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466 (470)
Q Consensus 390 np~~q~~k~Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~~~~~ 466 (470)
||++|++||||+|+|||||||||+++|+++||+||+++..+++++||.+|.+||.|||||+++|++|+++|+.+++.
T Consensus 447 NP~~q~~kfDp~g~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~al~~~~~~~~~ 523 (543)
T 2wq7_A 447 SPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYKV 523 (543)
T ss_dssp CTTTGGGGTCTTCHHHHHHSGGGTTSCHHHHTSGGGSCHHHHHHTTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhhhcCCCchhHHHhCHHhhccccccccCcccCChHHHHhhcccccCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988764
No 6
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=1.6e-116 Score=919.59 Aligned_cols=439 Identities=33% Similarity=0.571 Sum_probs=386.6
Q ss_pred cEEEEEEecCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChH
Q psy14494 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQ 81 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~ 81 (470)
||+||||+||.++..... +.+|++||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|++|++|+++
T Consensus 30 ~v~~vfi~dp~~~~~~~~----~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~ 105 (484)
T 1owl_A 30 QLIGLFCLDPQILQSADM----APARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPY 105 (484)
T ss_dssp CEEEEEEECHHHHTCTTC----CHHHHHHHHHHHHHHHHHHHHHTSCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHH
T ss_pred CEEEEEEEcchhhcCCCC----CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCChh
Confidence 699999999988765556 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcccccCCCCCccchHHHHHHHHHhhcccccCCCCCcccccccccccc-h
Q psy14494 82 AIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSS-K 160 (470)
Q Consensus 82 ~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~~~~g~~~~vft~F~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 160 (470)
+++||++|+++|++.||+++.+++++|++|+++.++.|++|+|||+|+++|++.+. + .|.+.|...+...... .
T Consensus 106 ~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~~~~~-~----~p~~~p~~~~~~~~~~~~ 180 (484)
T 1owl_A 106 GRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPK-P----TPVATPTELVDLSPEQLT 180 (484)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHHHSCC-C----CCCCCCCSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCcEEEEecCCEEEchhhhcccCCCCchhhHHHHHHHHHhcC-C----CCCCCccccccccccccc
Confidence 99999999999999999999999999999999999889999999999999988643 2 1223332211110000 0
Q ss_pred --hhhhccCcCCCcccCCCCcCCCCCCCCCccHHHHHHHHHHHHH-HhhcccccCCCCCCCCCCcccHhhhcCCccHHHH
Q psy14494 161 --LHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKL 237 (470)
Q Consensus 161 --~~~~~~~~~~~l~~l~~~~~~~~~~~~~gGe~~A~~~L~~Fl~-~l~~Y~~~r~~p~~~~tS~LSpyL~~G~iS~R~v 237 (470)
.... ...++.++.+++..... . .|+|||++|+++|++|++ ++.+|++.||.|+.++||+|||||+|||||||+|
T Consensus 181 ~~~~~~-~~~~~~~~~l~~~~~~~-~-~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~rd~p~~~~tS~LSpyL~~G~lSpr~v 257 (484)
T 1owl_A 181 AIAPLL-LSELPTLKQLGFDWDGG-F-PVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQA 257 (484)
T ss_dssp HHGGGC-CSSCCCTGGGTCCCCSC-C-SSCSSHHHHHHHHHHHHHTGGGGHHHHTTCTTSCCSCCCHHHHHTTSSCHHHH
T ss_pred cccccc-cCCCCCHHHcCCCcccc-C-cCCCCHHHHHHHHHHHHHHHHHHhccccCCCCccCCcCccHhHcCCCcCHHHH
Confidence 0000 12355666555543222 3 589999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhc-ccCCcchHHHHHHHHHHHHHHHHHHhCCcccccccchhhccCCCCCchhhhHHHhhhhcCCCCchHH
Q psy14494 238 VKLIFKFIKKHY-KTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLI 316 (470)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~d~~~~~~~~~w~~G~TG~p~v 316 (470)
++++.+.....- ....++.++|++||+|||||+++++++|++...++++.++.++|++|+ ..|++|++|+||||||
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~w~~d~---~~~~aW~~G~TG~P~v 334 (484)
T 1owl_A 258 WQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENRE---ALFTAWTQAQTGYPIV 334 (484)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSCCSTGGGGCCCCCCH---HHHHHHHTTCSSCHHH
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHhCCccccccCChhhhcCCCcCCH---HHHHHHHcCCCCChhH
Confidence 999987543100 011356789999999999999999999999998999999999999998 8899999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCCCcccccChhhhhh
Q psy14494 317 DSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSK 396 (470)
Q Consensus 317 DA~mrqL~~tG~mhnr~Rm~~asfl~k~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~p~~R~~np~~q~~ 396 (470)
|||||||++|||||||+||||||||||+|+|||++|++||+++|||||+|||+|||||++|||+|++| ||||||++|++
T Consensus 335 DAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~ag~G~d~~p-fRifNp~~q~~ 413 (484)
T 1owl_A 335 DAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAK 413 (484)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTTCTTCCHHHHHHHHHHTTTCSSSCCC-CCCCCHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCCCCcHHHHHHHHhcccCCcccCHHHHHHhhCcCCCCCc-cceeCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hcCCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy14494 397 KFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465 (470)
Q Consensus 397 k~Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~~~~ 465 (470)
||||+|+|||||||||+++|+++||+||+++ +.+| +||.|||||+++|++|+++|+++++
T Consensus 414 kfDp~g~yIr~wvPeL~~~p~~~ih~Pw~~~----~~~~-----~YP~PiVd~~~~r~~a~~~~~~~~~ 473 (484)
T 1owl_A 414 KFDATATYIKRWLPELRHVHPKDLISGEITP----IERR-----GYPAPIVNHNLRQKQFKALYNQLKA 473 (484)
T ss_dssp HHSTTCHHHHHHCGGGTTSCHHHHHHTCCCH----HHHT-----TSCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCchhHHHhChhhhcCChhhcCCcccch----hhhc-----CCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999983 2233 8999999999999999999999876
No 7
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=4.4e-116 Score=918.73 Aligned_cols=442 Identities=25% Similarity=0.459 Sum_probs=387.9
Q ss_pred cEEEEEEecCCCCCc-----cccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEec
Q psy14494 2 EVYCVFIFDKNILDP-----LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINH 76 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~-----~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~ 76 (470)
||+||||+||.++.. ... +++|++||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|++++
T Consensus 33 ~v~~vfi~dp~~~~~~~~~~~~~----~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 108 (489)
T 1np7_A 33 AITAVYCYDPRQFAQTHQGFAKT----GPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHR 108 (489)
T ss_dssp EEEEEEEECGGGGSBCTTSCBSS----CHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTEEEEEEEC
T ss_pred CEEEEEEECchhhcccccccCCC----CHHHHHHHHHHHHHHHHHHHHCCCcEEEEECCHHHHHHHHHHHcCCCEEEEec
Confidence 699999999988763 235 99999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcccccCCCCCccchHHHHHHH-HHhhcccccCCCCCcccccccc
Q psy14494 77 DYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWI-EKVKSNKCYLQSYPVKSYLNNL 155 (470)
Q Consensus 77 ~~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~~~~g~~~~vft~F~k~~~-~~~~~~~~~~~~~~~~~~~~~~ 155 (470)
+|++++++||++|+++|++.||+++.+++++|++|+++.+..|++|.|||+|+++|+ +.+... .|.+.|...
T Consensus 109 ~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~F~~~~~~~~~~~~----~p~~~p~~~--- 181 (489)
T 1np7_A 109 EVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIR----PCFFAPSQL--- 181 (489)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHHHHHHHTTTCCCC----CCCCCCSCC---
T ss_pred ccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccccccCCCCCCchHHHHHHHHHHhccCCC----CCCCCcccc---
Confidence 999999999999999999999999999999999999998888999999999999997 543221 222333211
Q ss_pred cccchhhhhccCcCCCcccCCCCc-CCCCCCCCCccHHHHHHHHHHHH--H-HhhcccccCCCC-CCCCCCcccHhhhcC
Q psy14494 156 VHSSKLHKIINNNIISLNDLGFCK-SNLSSLGIKTGASGAKILLNNFI--K-KIKNYNINRNYP-SINGTSYLSIHLRFG 230 (470)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~gGe~~A~~~L~~Fl--~-~l~~Y~~~r~~p-~~~~tS~LSpyL~~G 230 (470)
++.+.. .....+|.++++++.. +......|+|||++|+++|++|+ + ++.+|++.||.| +.++||+|||||+||
T Consensus 182 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~Rd~~~~~~~tS~LSpyL~~G 259 (489)
T 1np7_A 182 LPSPNI--KLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALG 259 (489)
T ss_dssp CCCCCC--CCCCCCCCGGGSCCCCCCTTSSCCCCCSHHHHHHHHHHHHTTSCCGGGHHHHTTCCSSSTTSCCCHHHHHTT
T ss_pred cCcccc--ccccCCCCHhhcCCCCcCccccCCCCCcHHHHHHHHHHHHhcchhHhhhhhcccCCccccCCcCcChhhcCC
Confidence 111100 0012356666776543 22223458999999999999999 5 899999999976 578999999999999
Q ss_pred CccHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHhCCcccccccchhhccCCCCCchhhhHHHhhhhcCC
Q psy14494 231 TISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGY 310 (470)
Q Consensus 231 ~iS~R~v~~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~d~~~~~~~~~w~~G~ 310 (470)
|||||+|++++.+..... ...++.+.|++||+|||||+++++++|++...+.+..++.++|++|+ ..|++|++|+
T Consensus 260 ~lSpr~v~~~~~~~~~~~--~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~d~---~~~~aW~~G~ 334 (489)
T 1np7_A 260 CLSPRFIYQEVKRYEQER--VSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQ---VRFELWRSGQ 334 (489)
T ss_dssp SSCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTTTTTCCCCCBCCH---HHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhhcc--cccchHHHHHHHHHHHHHHHHHHHHCcchhhhhcCcccccCCCccCH---HHHHHHHcCC
Confidence 999999999998742211 22345667999999999999999999998766666667888999998 8999999999
Q ss_pred CCchHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCCCcccccC
Q psy14494 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFN 390 (470)
Q Consensus 311 TG~p~vDA~mrqL~~tG~mhnr~Rm~~asfl~k~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~p~~R~~n 390 (470)
|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||++||+|||||+||||+|++ ||||||
T Consensus 335 TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~a~N~g~wqw~ag~g~d~~-~~RifN 413 (489)
T 1np7_A 335 TGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDAR-DFRYFN 413 (489)
T ss_dssp SSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCCTT-SCCCCC
T ss_pred CCChhHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCChhHHHHHHHHhcccChhcChHhhhhhhccCCCcc-cccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 799999
Q ss_pred hhhhhhhcCCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHH
Q psy14494 391 PIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNF 462 (470)
Q Consensus 391 p~~q~~k~Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~ 462 (470)
|++|++||||+|+|||||||||+++|+++||+||+++..+++++||.+|.+||.|||||+++|++|+++++.
T Consensus 414 p~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~ 485 (489)
T 1np7_A 414 IPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQSVEARRKIEQM 485 (489)
T ss_dssp HHHHHHHHSTTSHHHHHHCGGGTTCCSGGGGCGGGCCHHHHHHTTCCBTTTBCCCSSCHHHHHHHHHTCC--
T ss_pred HHHHhhhcCCCCccHHHhCHHhhccCcccccCCccCCHHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875
No 8
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-113 Score=882.81 Aligned_cols=401 Identities=33% Similarity=0.566 Sum_probs=359.7
Q ss_pred cEEEEEEecCCCCCccc-cCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCCh
Q psy14494 2 EVYCVFIFDKNILDPLR-SQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEP 80 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~~~-~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~ 80 (470)
||+||||+||+++...+ . |.+|++||++||++|+++|+++|++|+++.|++.++|.+|++ +|++|++|++|++
T Consensus 28 ~v~~vfi~dp~~~~~~~~~----~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~--~~~~v~~~~~~~~ 101 (440)
T 2e0i_A 28 RVIPVFIADPRQLINNPYK----SEFAVSFMINSLLELDDELRKKGSRLNVFFGEAEKVVSRFFN--KVDAIYVNEDYTP 101 (440)
T ss_dssp EEEEEEEECHHHHSSCTTC----CHHHHHHHHHHHHHHHHHHHTTTCCCEEEESCHHHHHHHHCT--TCSEEEEECCCSH
T ss_pred CEEEEEEeChhhhccCCcC----CHHHHHHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHc--CCCEEEEecccCh
Confidence 79999999999887655 6 999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcccccCCCCCccchHHHHHHHHH-hhcccccCCCCCcccccccccccc
Q psy14494 81 QAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEK-VKSNKCYLQSYPVKSYLNNLVHSS 159 (470)
Q Consensus 81 ~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~~~~g~~~~vft~F~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 159 (470)
++++||++|+++|++.||+++.+++++|++|+++ +|+|||||+++|++. +..+ +.+.|.+.. ++ .|
T Consensus 102 ~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~------~y~vftpf~~~~~~~~~~~p---~~~~~~~~~---~~-~p 168 (440)
T 2e0i_A 102 FSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF------HHRNFTSFYNEVSKVKVREP---ETMEGSFDV---TD-SS 168 (440)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC------CCSSHHHHHHHHTTSCCCCC---CCCCCCBCC---CS-SS
T ss_pred HHHHHHHHHHHHHHHcCceEEEecCCEEEccccc------CcccCcHHHHHHHHhccccc---ccCCCCccc---CC-Cc
Confidence 9999999999999999999999999999999988 799999999999775 3220 111122211 10 01
Q ss_pred hhhhhccCcCCCcccCCCCcCCCCCCCCCccHHHHHHHHHHHHH-HhhcccccCCCCCCCCCCcccHhhhcCCccHHHHH
Q psy14494 160 KLHKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLV 238 (470)
Q Consensus 160 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~gGe~~A~~~L~~Fl~-~l~~Y~~~r~~p~~~~tS~LSpyL~~G~iS~R~v~ 238 (470)
.. +.++ . . ....++|||++|+++|+ |++ ++.+| +.||.|+.++||+|||||+|||||||+|+
T Consensus 169 ~~----------~~~l--p-~--~~~~~~~Ge~~A~~~L~-Fl~~~l~~Y-~~rd~p~~~~tS~LSPyL~~G~lSpr~v~ 231 (440)
T 2e0i_A 169 MN----------VDFL--L-T--FKKIESPLFRGGRREGL-YLLHRNVDF-RRRDYPAENNNYRLSPHLKFGTISMREAY 231 (440)
T ss_dssp BC----------GGGG--G-G--TCCCCCTTCCCSHHHHH-HHHTCCCCG-GGTTCTTTTCCCCCHHHHHTTSSCHHHHH
T ss_pred ch----------hhhC--C-c--cccCCCCCHHHHHHHHH-HHHhhhhcC-CcCCCccccCCCCccHhHhCCCCCHHHHH
Confidence 10 0011 1 0 12347999999999999 999 99999 99999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHhCCcccccccchhhccCCCCCchhhhHHHhhhhcCCCCchHHHH
Q psy14494 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDS 318 (470)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~d~~~~~~~~~w~~G~TG~p~vDA 318 (470)
+++ ++.++|++||+|||||+++++++|++...++++.++.++|.+|+ ..|++|++|+||||||||
T Consensus 232 ~~~------------~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~W~~d~---~~~~aW~~G~TG~P~vDA 296 (440)
T 2e0i_A 232 YTQ------------KGKEEFVRELYWRDFFTLLAYYNPHVFGHCYRREYDNISWENNE---SYFEAWKEGRTGYPIIDA 296 (440)
T ss_dssp HHS------------TTCHHHHHHHHHHHHHHHHHHHCGGGTTSCSSGGGGGCCCCCCH---HHHHHHHHTCSSCHHHHH
T ss_pred HHh------------cCHHHHHHHHHHHHHHHHHHHhCCCccccccchhhhcCCcccch---HHHHHHHhCCCCCHHHHH
Confidence 987 14578999999999999999999999999999999999999998 889999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCCCcccccChhhhhhhc
Q psy14494 319 AIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKF 398 (470)
Q Consensus 319 ~mrqL~~tG~mhnr~Rm~~asfl~k~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~p~~R~~np~~q~~k~ 398 (470)
|||||++|||||||+||||||||||+|+|||+.|++||+++|||||+|||+|||||+||||+|+ |||||||++|++||
T Consensus 297 aMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~--~~RifNp~~q~~kf 374 (440)
T 2e0i_A 297 GMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGERYFATKLVDYDPAINNGNWQWIASTGVDY--MFRVFNPWKQQEKF 374 (440)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCC--SCCCCCHHHHHHHH
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHcccCCccccHHHHHHHhCcCCCC--CCCccCHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred CCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy14494 399 DYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466 (470)
Q Consensus 399 Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~~~~~ 466 (470)
||+|+|||||||||+++|+++||+||++ +|.+||.|||||+++|++|+++|+++++.
T Consensus 375 Dp~g~yIr~wvPeL~~~p~~~ih~pw~~-----------~~~~YP~PiVd~~~~r~~a~~~~~~~~~~ 431 (440)
T 2e0i_A 375 DPEAKFIKEWVEELKDVPPSIIHSIYKT-----------KVPGYPSPIVNWLERVNYVKSEYKNVKAV 431 (440)
T ss_dssp CTTCHHHHHHCGGGGGSCHHHHTTTTTS-----------CCTTSCCCSSCHHHHHHHHHHHHHHC---
T ss_pred CCCcHhHHHhCHHhhccCcccccCchhh-----------cCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999986 36799999999999999999999987653
No 9
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=5.7e-111 Score=884.57 Aligned_cols=439 Identities=21% Similarity=0.347 Sum_probs=359.9
Q ss_pred cEEEEEEecCCCCCc------cccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEe
Q psy14494 2 EVYCVFIFDKNILDP------LRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMIN 75 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~------~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~ 75 (470)
+|+||||+||.++.. ... +++|++||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|+++
T Consensus 67 ~v~~vfi~dp~~~~~~~~~~~~~~----~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 142 (525)
T 2j4d_A 67 TILPVYCLDPRLFHTTHFFNFPKT----GALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAH 142 (525)
T ss_dssp EEEEEEEECGGGGSBCTTTCCBSS----CHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHHHHTCSEEEEE
T ss_pred cEEEEEEECchhhcccccccCCCC----CHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHcCCCEEEEe
Confidence 699999999988753 234 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHcC--cEEEEEeCceeEcCCcccccCCCCCccchHHHHHHHHHhhcccccCCCCCcccccc
Q psy14494 76 HDYEPQAIIRDKLIKKELKVIG--CKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLN 153 (470)
Q Consensus 76 ~~~~~~~~~rd~~v~~~l~~~~--v~~~~~~~~~L~~p~~i~~~~g~~~~vft~F~k~~~~~~~~~~~~~~~~~~~~~~~ 153 (470)
++|++++++||++|+++|++.| |+++.+++++|++|+++.+..|++|.|||+|+++|++.+.. ..|.+.|...
T Consensus 143 ~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g~~~~vft~F~r~~~~~~~~----~~p~~~p~~~- 217 (525)
T 2j4d_A 143 KETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSI----RSSTRIPLSL- 217 (525)
T ss_dssp CCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSSHHHHHHHHHHHCCC----CCCCCBCSCC-
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEccccccccCCCCcccHHHHHHHHHHhcCC----CCCCCCcccc-
Confidence 9999999999999999999999 89999999999999999998899999999999999886532 2233333221
Q ss_pred cccccchhhhhccCcCCCcccCCCCcC-CCCCCCCCccHHHHHHHHHHHH-H--HhhcccccCCCC-CCCCCCcccHhhh
Q psy14494 154 NLVHSSKLHKIINNNIISLNDLGFCKS-NLSSLGIKTGASGAKILLNNFI-K--KIKNYNINRNYP-SINGTSYLSIHLR 228 (470)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~gGe~~A~~~L~~Fl-~--~l~~Y~~~r~~p-~~~~tS~LSpyL~ 228 (470)
+..+.. .....+|.++++++... ......|+|||++|+++|++|+ + ++.+|++.||.| +.++||+|||||+
T Consensus 218 --~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~Rd~~~~~~~tS~LSPyL~ 293 (525)
T 2j4d_A 218 --GPTPSV--DDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLA 293 (525)
T ss_dssp --CCCCCC--SCCCCCCCTTTTTCCCCCCCSEEEECCSHHHHHHHHHHHHTTSCCGGGHHHHTTCCSSSTTSCCCHHHHH
T ss_pred --CCcccc--ccccCCCCHHHcCCCcccccccCCCCCcHHHHHHHHHHHHhhCchHhhhcccCCCccccccCCCcChhhc
Confidence 111100 00123456666665431 1122348999999999999999 4 699999999975 7899999999999
Q ss_pred cCCccHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHhC-CcccccccchhhccCCCCCchhhhHHHhhhh
Q psy14494 229 FGTISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCY-PNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307 (470)
Q Consensus 229 ~G~iS~R~v~~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~-p~~~~~~~~~~~~~~~w~~d~~~~~~~~~w~ 307 (470)
|||||||+|++++.++.... ...++.+.|++||+|||||++++.++ |.+......+ ...++|++++ +.|++|+
T Consensus 294 ~G~LSpR~v~~~~~~~~~~~--~~~~~~~~f~~EL~WREf~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~---~~~~aW~ 367 (525)
T 2j4d_A 294 FGCISPRFIYEEVQRYEKER--VANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPR-NVQGKWSQDQ---KLFESWR 367 (525)
T ss_dssp TTSSCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHHHHHHHHHHHGGGGTSTTTTT-TCCCCCBCCH---HHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhhcc--cccccHHHHHHHHHHHHHHHHHHHHcCchhhhccCch-hhcCCCCCCH---HHHHHHH
Confidence 99999999999998753221 22345667999999999999998876 4444332223 3578899998 8999999
Q ss_pred cCCCCchHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCCCccc
Q psy14494 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFR 387 (470)
Q Consensus 308 ~G~TG~p~vDA~mrqL~~tG~mhnr~Rm~~asfl~k~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~p~~R 387 (470)
+|+|||||||||||||++|||||||+||||||||||+|+|||++|++||+++|||||+|||+|||||+||+|+|++| ||
T Consensus 368 ~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~a~n~g~WQw~aG~g~D~~~-~R 446 (525)
T 2j4d_A 368 DAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DR 446 (525)
T ss_dssp TTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSSCGGG-CC
T ss_pred cCCCCChHHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCcHHHHHHHHHhccccchhcChHHHHhhcCCCCCccc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 79
Q ss_pred ccChhhhhhhcCCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy14494 388 IFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465 (470)
Q Consensus 388 ~~np~~q~~k~Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~~~~ 465 (470)
||||++|++||||+|+|||||||||+++|+++||+||+++ .++|++|.+||+|||||.++|+++++.++..++
T Consensus 447 ifNP~~q~kk~Dp~G~YIrrwvPEL~~~p~~~ih~Pw~~~-----~~~~~~g~~Yp~Pi~~~~~~~~~~~~~~~~~~~ 519 (525)
T 2j4d_A 447 YFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM-----YMDTVVPLKHGNGPMAGGSKSGGGFRGSHSGRR 519 (525)
T ss_dssp CCCHHHHHHHHCTTCHHHHHHSGGGTTSCTTTTTSCHHHH-----TCCCSSCCSCCC---------------------
T ss_pred cCCHHHHhhhcCCCchhHHHhChhhhcCChhcccCCccCc-----ccccccCCCCCCCcccchhhhhccchhhhcccc
Confidence 9999999999999999999999999999999999999974 478999999999999999999999999886443
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=5.3e-109 Score=847.78 Aligned_cols=391 Identities=23% Similarity=0.425 Sum_probs=353.4
Q ss_pred cEEEEEEecCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChH
Q psy14494 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQ 81 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~ 81 (470)
||+||||+||.++. . +.+|+.||++||++|+++|+++|++|+++.|++.++|.+|+++++|++|++|++|++.
T Consensus 28 ~v~~vfi~d~~~~~---~----~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~ 100 (420)
T 2j07_A 28 PVVGLVVLDPNNLK---T----TPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPY 100 (420)
T ss_dssp CEEEEEEECHHHHS---S----CHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHH
T ss_pred CEEEEEEECCcccc---C----CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEecccChh
Confidence 69999999998774 3 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcccccCCCCCccchHHHHHHHHHhhcccccCCCCCcccccccccccchh
Q psy14494 82 AIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKL 161 (470)
Q Consensus 82 ~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~~~~g~~~~vft~F~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (470)
+++||++|+++| ||+++.+++++|++|++ |++|.|||+|+|+|+ .+. .|.+.|... ..|.
T Consensus 101 ~~~rd~~v~~~l---~i~~~~~~~~~l~~~~~-----~~~~~~~t~f~k~~~-~~~------~p~~~p~~~----~~p~- 160 (420)
T 2j07_A 101 GRYRDGRVREAL---PVPLHLLPAPHLLPPDL-----PRAYRVYTPFSRLYR-GAA------PPLPPPEAL----PKGP- 160 (420)
T ss_dssp HHHHHHHHHHHC---SSCEEEECCCCSSCTTC-----SSCCSSHHHHHTTCC-CCC------CCCCCCSSC----CCCC-
T ss_pred HHHHHHHHHHHc---CCeEEEeCCCEEEccCC-----CCccccccHHHHHHh-hcc------CCCCCcccc----CCCC-
Confidence 999999999998 99999999999999987 789999999999986 422 122222211 0110
Q ss_pred hhhccCcCCCcccCCCCcCCCCCCCCCccHHHHHHHHHHHHH-HhhcccccCCCCCCCCCCcccHhhhcCCccHHHHHHH
Q psy14494 162 HKIINNNIISLNDLGFCKSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKL 240 (470)
Q Consensus 162 ~~~~~~~~~~l~~l~~~~~~~~~~~~~gGe~~A~~~L~~Fl~-~l~~Y~~~r~~p~~~~tS~LSpyL~~G~iS~R~v~~~ 240 (470)
....+|. .......|+|||++|+++|++|++ ++.+|++.||.|+.++||+|||||+|||||||+|+++
T Consensus 161 ---~~~~l~~--------~~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~rd~p~~~~tS~LSpyL~~G~lSpr~v~~~ 229 (420)
T 2j07_A 161 ---EEGEIPR--------EDPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFALGVLSPRLAAWE 229 (420)
T ss_dssp ---CCCCCCC--------CCCSSCCCCCSHHHHHHHHHHHHHHTGGGHHHHTTCTTCTTSCCCHHHHHTTSSCHHHHHHH
T ss_pred ---ccccCCC--------cccccccCCCcHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCCcchhhcCCccCHHHHHHH
Confidence 0111111 111223589999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHhCCcccccccchhhccCCCCCchhhhHHHhhhhcCCCCchHHHHHH
Q psy14494 241 IFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAI 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~d~~~~~~~~~w~~G~TG~p~vDA~m 320 (470)
+.+.. .++.++|++||+|||||+++++++|++...++++.++.++|.+|+ ..|++|++|+||||||||||
T Consensus 230 ~~~~~-------~~~~~~f~~eL~WREf~~~~~~~~p~~~~~~~~~~~~~l~w~~d~---~~~~~w~~G~TG~P~vDAaM 299 (420)
T 2j07_A 230 AERRG-------GEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDE---ALFQAWYEGKTGVPLVDAAM 299 (420)
T ss_dssp HHHHC-------SHHHHHHHHHHHHHHHHHHHHHHCGGGGTSCSSGGGTTCCCCCCH---HHHHHHHTTCSSCHHHHHHH
T ss_pred HHHHh-------ccCHHHHHHHHHHHHHHHHHHHhCCcccccccchhhhcCCcccCH---HHHHHHHcCCCCcHhHHHHH
Confidence 97741 356788999999999999999999999888999999999999998 88999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCCChHHHHHHHHhccccCCCCCcchhhhhhccCCCCCCcccccChhhhhhhcCC
Q psy14494 321 IQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDY 400 (470)
Q Consensus 321 rqL~~tG~mhnr~Rm~~asfl~k~L~idW~~g~~~F~~~LiD~d~a~n~~~wqw~ag~G~d~~p~~R~~np~~q~~k~Dp 400 (470)
|||++|||||||+||||||||||+|+|||+.|++||+++|||||+|||+|||||+||+|+|++||||||||++|++||||
T Consensus 300 rqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~~pyfR~fNp~~q~~kfDp 379 (420)
T 2j07_A 300 RELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDP 379 (420)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGCCTTCCCCHHHHHHHHST
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhhcCCccccHHHHHHHHccCCCCCCCceeeCHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy14494 401 QGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKN 465 (470)
Q Consensus 401 ~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~~~~~~~~~~~~~~ 465 (470)
+|+|||+|||||+++| ||+|||||+++|++|+++|+++++
T Consensus 380 ~g~yir~w~pel~~~p-------------------------YP~Pivd~~~~r~~a~~~~~~~~~ 419 (420)
T 2j07_A 380 EGRWLKRWAPEYPSYA-------------------------PKDPVVDLEEARRRYLRLARDLAR 419 (420)
T ss_dssp TSHHHHHHCTTCSSSS-------------------------CSSCSSCHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHhChhhcCCC-------------------------CCCCccCHHHHHHHHHHHHHHhhc
Confidence 9999999999999997 999999999999999999998763
No 11
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=6.1e-89 Score=709.97 Aligned_cols=389 Identities=19% Similarity=0.215 Sum_probs=309.9
Q ss_pred cEEEEEEecCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChH
Q psy14494 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQ 81 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~ 81 (470)
|||||||+||.++. ... |.+|++||++||++|+++|+++|++|+|+.|++.++ ++|+++++|++|+++.++...
T Consensus 69 pVl~vfildp~~~~-~~~----~~~r~~FL~~sL~dL~~~L~~lG~~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~ 142 (506)
T 3umv_A 69 PLAVAFALFPRPFL-LSA----RRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRP 142 (506)
T ss_dssp CEEEEEECCCTTCG-GGC----CHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHH
T ss_pred CEEEEEeccchhhc-cCC----CHHHHHHHHHHHHHHHHHHHHcCCceEEEecChHHH-HHHHHhcCCCEEEeccChhHH
Confidence 79999999999653 345 999999999999999999999999999999999999 999999999999998888777
Q ss_pred HHHHHHHHHHHHH--HcCcEEEEEeCceeEcCCcccccCCCCCccchHHHHHHHHHhhcccccCCCCCcccccccc-ccc
Q psy14494 82 AIIRDKLIKKELK--VIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNL-VHS 158 (470)
Q Consensus 82 ~~~rd~~v~~~l~--~~~v~~~~~~~~~L~~p~~i~~~~g~~~~vft~F~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 158 (470)
+++||++|+++|+ +.||+++++++++|++|+++.++. +|.++| |+++|.+.+... +.+.|........ ...
T Consensus 143 ~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~~v~~~~--~~~~~t-~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~ 216 (506)
T 3umv_A 143 VREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM--EYSAKT-FRGKVSKVMDEY---LVEFPELPAVVPWDREQ 216 (506)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHHHHCSSC--CSSHHH-HHHHHHTTHHHH---SCCCCCCCCCCCCCSCC
T ss_pred HHHHHHHHHHHHhhccCCeEEEEeCCcEEECcccccCCC--CCCccC-HHHHHHHhcccc---ccCCCCCCCcccccccc
Confidence 7899999999997 689999999999999999987765 466777 445555544332 1111110000000 000
Q ss_pred chhhhhccCcCCCccc-C-CCCcCCCCCCCCCccHHHHHHHH----HHHHH-HhhcccccCCCCCC-CCCCcccHhhhcC
Q psy14494 159 SKLHKIINNNIISLND-L-GFCKSNLSSLGIKTGASGAKILL----NNFIK-KIKNYNINRNYPSI-NGTSYLSIHLRFG 230 (470)
Q Consensus 159 ~~~~~~~~~~~~~l~~-l-~~~~~~~~~~~~~gGe~~A~~~L----~~Fl~-~l~~Y~~~r~~p~~-~~tS~LSpyL~~G 230 (470)
+.. ..++.+.+ + ++.........++|||++|+++| ++|++ ++.+|+..||.|+. ++||+|||||+||
T Consensus 217 ~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G 291 (506)
T 3umv_A 217 PEG-----VDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFG 291 (506)
T ss_dssp CCC-----CCHHHHHHHHHHTSCCCCCCCSSCCSHHHHHHHHHCTTTCHHHHTGGGHHHHTTCTTCGGGSCCCHHHHHHT
T ss_pred ccc-----cChhhhhhhhccccccccccCCCCCCHHHHHHHHHhhHHHHHHhHHhhhccccCCccccCCCccCCHHHhCC
Confidence 000 00111100 1 11111111234689999999999 99999 99999999999987 8999999999999
Q ss_pred CccHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHH-HHHHHHHHhCCcccccccchhhccCCCCC--------chhhh-
Q psy14494 231 TISIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLIWR-DFYQMILYCYPNVVNKSFKKEYDNILWES--------DNYAK- 300 (470)
Q Consensus 231 ~iS~R~v~~~~~~~~~~~~~~~~~~~~~f~~eL~WR-ef~~~~~~~~p~~~~~~~~~~~~~~~w~~--------d~~~~- 300 (470)
|||||+|++++.+... ...++.++|++||+|| |||+++++++|++.... ..++|.. |.++.
T Consensus 292 ~lS~r~v~~~~~~~~~----~~~~~~~~f~~eL~WRREf~~~~~~~~p~~~~~~-----~~~~w~~~~l~~~~~d~~~~~ 362 (506)
T 3umv_A 292 HISAQRCALEAKKCRH----LSPKSVDAFLEELVVRRELADNFCYYQPQYDSLS-----GAWEWARKTLMDHAADKREHI 362 (506)
T ss_dssp SSCHHHHHHHHHHHGG----GSHHHHHHHHHHHTHHHHHHHHHHHHCTTTTSGG-----GSCHHHHHHHHHTTTSCCSCC
T ss_pred CcCHHHHHHHHHHHHh----hccccHHHHHHHHHHhHHHHHHHHHhCcchhhhh-----ccchhhhhhhhhhcccchhhh
Confidence 9999999999987532 2345678999999996 99999999999986432 2344532 22111
Q ss_pred HHHhhhhcCCCCchHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCChHHHH-------HHHHh-ccccCCCCCcchh
Q psy14494 301 KNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGEN-------YFANK-LNDFDLASNNGNW 372 (470)
Q Consensus 301 ~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~Rm~~asfl~k~L~idW~~g~~-------~F~~~-LiD~d~a~n~~~w 372 (470)
+.|++|++|+|||||||||||||++|||||||+||||| |+| |||+.|++ ||+++ |||||+|||||||
T Consensus 363 ~~~~~w~~G~TG~p~vDA~mrqL~~tG~mHnr~Rm~~a----k~l-l~W~~g~~~~~~~a~~f~~~~llD~d~~~n~~~w 437 (506)
T 3umv_A 363 YTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWA----KKI-LEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGC 437 (506)
T ss_dssp CCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHH----HHH-HHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHH
T ss_pred ccHHHHHcCCCCCHHHHHHHHHHHHhCchhHHHHHHHH----Hhh-ccCCCCHHHHHHHHHHHhhccCcccCccccccce
Confidence 25999999999999999999999999999999999998 999 99999998 99996 9999999999999
Q ss_pred hhhh-cc---CCCCCCcc---cccChhhhhhhcCCcc--hhHHhhccccccCCCcccc
Q psy14494 373 QWSA-SS---GCSSQPFF---RIFNPIIQSKKFDYQG--IFIRKYLPQLSKLSNKYIH 421 (470)
Q Consensus 373 qw~a-g~---G~d~~p~~---R~~np~~q~~k~Dp~g--~yIr~w~PeL~~~p~~~ih 421 (470)
||++ |+ |.|.+||| |+|||++|++||||+| +|||+|||||+++|.+.-+
T Consensus 438 qw~a~G~~~~g~~~~p~fg~iR~~np~~q~~k~Dp~gyi~yir~wvpel~~~~~~~~~ 495 (506)
T 3umv_A 438 MWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQSKKRNAEESP 495 (506)
T ss_dssp HHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHHHHHHHHHHHHHHHHHHC-----
T ss_pred eEEecCCCCCCCccccccCcceeECHHHHHHHhCCCchHHHHHHhCHHhcCCCccccc
Confidence 9999 65 88889998 9999999999999999 9999999999999988544
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=1e-86 Score=695.85 Aligned_cols=384 Identities=20% Similarity=0.250 Sum_probs=304.4
Q ss_pred cEEEEEEecCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChH
Q psy14494 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQ 81 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~ 81 (470)
||+||||+||.++. . +.+|+.||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|+++++|++.
T Consensus 68 ~v~~vfi~dp~~~~---~----~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~ 140 (482)
T 2xry_A 68 PVVVVFCLTDEFLE---A----GIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRI 140 (482)
T ss_dssp CEEEEEEECTTGGG---S----CHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHH
T ss_pred cEEEEEEeChhhhc---c----CHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHcCCCEEEEecccchh
Confidence 79999999998864 3 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcccccCCCCCccchHHHHHHHHHhhcccc-cC--CCCCccccccccccc
Q psy14494 82 AIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKPYSIFSFYQKKWIEKVKSNKC-YL--QSYPVKSYLNNLVHS 158 (470)
Q Consensus 82 ~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i~~~~g~~~~vft~F~k~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~ 158 (470)
++++|++|++.+ ||+++.+++++|++++++.++.+ |++|| |+++|.+.+...+. .+ .|.+.+...+.....
T Consensus 141 ~~~~~~~v~~~l---gi~~~~~~~~~l~~~~~~~~~~~--~~v~t-f~~~~~~~~~~~~~~~p~~~p~~~~~~lp~~~~~ 214 (482)
T 2xry_A 141 KNQWIEKVISGI---SIPFFEVDAHNVVPCWEASQKHE--YAAHT-FRPKLYALLPEFLEEFPELEPNSVTPELSAGAGM 214 (482)
T ss_dssp HHHHHHHHHHHC---CSCEEEECCSSSSCHHHHCSSCC--SSHHH-HHHHHHHHHHHHCCCCCCCCCCSSCCC-------
T ss_pred HHHHHHHHHHHc---CCEEEEEeCCEEccccccccCCC--Cceec-chHHHHHHHHhhccccCCCCCCCCccccCCccch
Confidence 999999998876 99999999999999998877654 99999 55667776543211 01 111111000000000
Q ss_pred chhh-hhc-cCcCCCc--ccCCCCcCCCC-CCCCCccHHHHHHHHHHHHH-HhhcccccCCCCCCCCCCcccHhhhcCCc
Q psy14494 159 SKLH-KII-NNNIISL--NDLGFCKSNLS-SLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTI 232 (470)
Q Consensus 159 ~~~~-~~~-~~~~~~l--~~l~~~~~~~~-~~~~~gGe~~A~~~L~~Fl~-~l~~Y~~~r~~p~~~~tS~LSpyL~~G~i 232 (470)
+... .+. +..+|.+ +.+|....... ...|+|||++|+++|++|++ ++.+|++.||.|+.++||+|||||+||||
T Consensus 215 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~Rd~p~~~~tS~LSPyL~~G~L 294 (482)
T 2xry_A 215 VETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADRLDSYGALRNDPTKNMLSNLSPYLHFGQI 294 (482)
T ss_dssp --CHHHHHHHHHHHHGGGCCBCTTSCBCCCTTSCCCSHHHHHHHHHHHHHHTHHHHHHHTTCTTSCCSCCCHHHHHTTSS
T ss_pred hhhhhhhcccCCCCCcchhhhccccccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCccCCCCcCHHHhCCcc
Confidence 0000 000 0001111 12332211110 11489999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhhhcccCCcchHHHHHHHH-HHHHHHHHHHhCCcccccccchhhccC--C-CCCchhhh-HHHhhhh
Q psy14494 233 SIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI-WRDFYQMILYCYPNVVNKSFKKEYDNI--L-WESDNYAK-KNFLNWC 307 (470)
Q Consensus 233 S~R~v~~~~~~~~~~~~~~~~~~~~~f~~eL~-WRef~~~~~~~~p~~~~~~~~~~~~~~--~-w~~d~~~~-~~~~~w~ 307 (470)
|||+|++++.+.. ...++.++|++||+ ||||++++++++|++...+..+.|... . |.+|+++. +.+++|+
T Consensus 295 SpR~v~~~~~~~~-----~~~~~~e~fl~ELi~WREf~~~~~~~~P~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~ 369 (482)
T 2xry_A 295 SSQRVVLEVEKAE-----SNPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFE 369 (482)
T ss_dssp CHHHHHHHHHHCC-----CCTTHHHHHHHHHTHHHHHHHHHHHHCTTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHH
T ss_pred CHHHHHHHHHHhh-----cccccHHHHHHHHHHHHHHHHHHHHhCCcccccccchHHHhhhhhhcccCchhhhHHHHHHH
Confidence 9999999997642 23467889999998 999999999999999765544443221 1 33343211 2699999
Q ss_pred cCCCCchHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC-hHHHHHHHHhc-------cccCCCCCcchhhhhhccC
Q psy14494 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINW-KWGENYFANKL-------NDFDLASNNGNWQWSASSG 379 (470)
Q Consensus 308 ~G~TG~p~vDA~mrqL~~tG~mhnr~Rm~~asfl~k~L~idW-~~g~~~F~~~L-------iD~d~a~n~~~wqw~ag~G 379 (470)
+|+|||||||||||||++|||||||+||||| |+| ||| +.|++||+.+| ||||+|||+|||||++| |
T Consensus 370 ~G~TG~P~VDAaMrqL~~tG~mHnr~RM~va----k~L-idW~~~ge~~f~~~l~Lnd~y~iD~d~ann~ggwqw~ag-G 443 (482)
T 2xry_A 370 AGKTHDPLWNASQMELLSTGKMHGYTRMYWA----KKI-LEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIG-G 443 (482)
T ss_dssp TTCSSCHHHHHHHHHHHHHSCCCHHHHHHHH----HHH-HHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHH-C
T ss_pred hCCcCCHHHHHHHHHHHHhCccccHHHHHHH----ccc-CCCCchHHHHHHHHHHhcCceeccCCCccchhHhhhhhc-C
Confidence 9999999999999999999999999999998 888 999 89999999994 99999999999999998 7
Q ss_pred CCCC-----Ccc---cccChhhhhhhcCCcchhHHhhcc
Q psy14494 380 CSSQ-----PFF---RIFNPIIQSKKFDYQGIFIRKYLP 410 (470)
Q Consensus 380 ~d~~-----p~~---R~~np~~q~~k~Dp~g~yIr~w~P 410 (470)
++++ ||| |||||++|++||||+| |||+|+|
T Consensus 444 ~~~~~~~~~p~fg~~R~fnp~~q~~kfD~~~-yir~w~~ 481 (482)
T 2xry_A 444 VHDRAWGEREVTGKIRYMSYEGCKRKFDVKL-YIEKYSA 481 (482)
T ss_dssp TTSCCCCCBTTTBTSCCCCHHHHHHHSCHHH-HHHHTC-
T ss_pred CCCCCcccccccccceeechhHhhhhcCHHH-HHHHHhc
Confidence 7664 677 9999999999999998 9999995
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.6e-72 Score=576.69 Aligned_cols=386 Identities=11% Similarity=0.096 Sum_probs=305.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcEEEEE-------cChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHc
Q psy14494 24 EDRRIEFIFKSIIELSINLQNYDSDLIIRY-------AIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVI 96 (470)
Q Consensus 24 ~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~-------g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~ 96 (470)
++.|+.|++.||++|+++|+++|.+|+++. |++.++|.++++++++++|+++ +|.+..+|++|+++
T Consensus 58 h~~Ki~~l~saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~---~P~e~r~~~~l~~~---- 130 (522)
T 3zxs_A 58 HPQKIALILAAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVAT---RPGDWRLIEALEAM---- 130 (522)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEE---CCSCHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEe---CcchHHHHHHHHHc----
Confidence 889999999999999999999999999998 8999999999999999999999 68888899988855
Q ss_pred CcEEEEEeCc-eeEcCCcccc--cCCCCCccchHHHHHHHHHhhcccccCCCC------------Cccccccccc---cc
Q psy14494 97 GCKFFSYKDQ-VIFEKNEILN--KTGKPYSIFSFYQKKWIEKVKSNKCYLQSY------------PVKSYLNNLV---HS 158 (470)
Q Consensus 97 ~v~~~~~~~~-~L~~p~~i~~--~~g~~~~vft~F~k~~~~~~~~~~~~~~~~------------~~~~~~~~~~---~~ 158 (470)
||++..+++. +|++|+++.+ ..|++|.+ ++|||.|+++....|....|. +.|....... ..
T Consensus 131 gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~m-e~FYR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~~~~p~~~~~~ 209 (522)
T 3zxs_A 131 PLPVRFLPDDRFLCPADEFARWTEGRKQLRM-EWFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDLLRPRPLRFE 209 (522)
T ss_dssp SSCEEEECCCCSSSCHHHHHHHHTTCSSCCH-HHHHHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCCTTCCCCCCCC
T ss_pred CCcEEEeCCCCcccCHHHHHHhhcCCCCeEe-eHHHHHHHHHhCcCCCCCCCCCCccCccccccccCCCCCCCCCCCCCC
Confidence 9999999985 8999999987 66889988 599999998765443211110 1111100000 00
Q ss_pred chhhhhccCcCCCcccCCCC-cCCCCCCCCCccHHHHHHHHHHHHH-HhhcccccCCCCCCC----CCCcccHhhhcCCc
Q psy14494 159 SKLHKIINNNIISLNDLGFC-KSNLSSLGIKTGASGAKILLNNFIK-KIKNYNINRNYPSIN----GTSYLSIHLRFGTI 232 (470)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~gGe~~A~~~L~~Fl~-~l~~Y~~~r~~p~~~----~tS~LSpyL~~G~i 232 (470)
++. +....++.++..... .+....+.|++||++|+++|++|++ ++.+|+..||.|+.+ +||+|||||+||+|
T Consensus 210 ~d~--~~~~v~~~v~~~~~~~~G~~~~~~~~~ge~~A~~~L~~Fl~~rl~~Y~~~rD~~~~~~~~~~tS~LSpyL~~G~L 287 (522)
T 3zxs_A 210 PDA--EVRAVLDLVEARFPRHFGRLRPFHWATDRAEALRALDHFIRESLPRFGDEQDAMLADDPFLSHALLSSSMNLGLL 287 (522)
T ss_dssp CCH--HHHHHHHHHHHHCTTSSSCCCSCCCCCSHHHHHHHHHHHHHHTGGGTTTTTTCCBTTBSSTTCCCCHHHHHHTSS
T ss_pred Cch--hHHHHHHHHHHhccCCcCccccCCCCCCHHHHHHHHHHHHHhhhhhhhhhccCcccCCCCCCcccccHHHhCCCc
Confidence 000 000001111111000 1223345699999999999999999 999999999998765 69999999999999
Q ss_pred cHHHHHHHHHHHhhhhcccCCcchHHHHHHHH-HHHHHHHHHHhC-CcccccccchhhccCCCCCchhhhHHHhhhhcCC
Q psy14494 233 SIRKLVKLIFKFIKKHYKTDCIGYFTWLSQLI-WRDFYQMILYCY-PNVVNKSFKKEYDNILWESDNYAKKNFLNWCKGY 310 (470)
Q Consensus 233 S~R~v~~~~~~~~~~~~~~~~~~~~~f~~eL~-WRef~~~~~~~~-p~~~~~~~~~~~~~~~w~~d~~~~~~~~~w~~G~ 310 (470)
|||+|++++.+..... ....++.++|++||+ ||||++++++++ |++...++.+.++ ...++|++|+
T Consensus 288 SpRev~~~~~~~~~~~-~~~~~~~e~firellgWREF~~~l~~~~~P~~~~~n~~~~~~-----------~l~~~~w~G~ 355 (522)
T 3zxs_A 288 GPMEVCRRAETEWREG-RAPLNAVEGFIRQILGWREYVRGIWTLSGPDYIRSNGLGHSA-----------ALPPLYWGKP 355 (522)
T ss_dssp CHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHTHHHHHHHHHHHHGGGGGGCCTTCCCB-----------CCCGGGGTCC
T ss_pred CHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHHHHHHHHHHhCccccccccccccc-----------cchHHHhcCC
Confidence 9999999998764322 122356788999997 999999999885 8886655533322 2234566999
Q ss_pred CCchHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCChHHHHHHHHhcccc----CCCCCcchhhhhhccCCCCCCcc
Q psy14494 311 TGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDF----DLASNNGNWQWSASSGCSSQPFF 386 (470)
Q Consensus 311 TG~p~vDA~mrqL~~tG~mhnr~Rm~~asfl~k~L~idW~~g~~~F~~~LiD~----d~a~n~~~wqw~ag~G~d~~p~~ 386 (470)
|||||||||||||++|||||||+||||||||||+|+|||++|++||+++|||| +.+|++|||||++|++++++||
T Consensus 356 TG~P~VDA~MRqL~~TGwmHnr~RmmVasfl~k~L~idWr~G~~wF~~~LiD~~~Wv~~~N~~Gm~q~a~Gg~~~~KPY- 434 (522)
T 3zxs_A 356 TRMACLSAAVAQTRDLAYAHHIQRLMVTGNFALLAGVDPAEVHEWYLSVYIDALEWVEAPNTIGMSQFADHGLLGSKPY- 434 (522)
T ss_dssp CSCHHHHHHHHHHHHHSCCCHHHHHHTHHHHHHHTTBCHHHHHHHHHHHCTTCCHHHHHHHHHTTTTCCSSSTTCSSCC-
T ss_pred CCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHcCCChHHHHHHHHHHhcchhhhhhccccccchheecCCccCCCCC-
Confidence 99999999999999999999999999999999999999999999999999999 6899999999999977888887
Q ss_pred cccChhhhhhhcCCcchhHHhhccccccCCCccccCccccChHHHHHcCCccCCCCCCCCCChHHH
Q psy14494 387 RIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKASSYKLEKAGIILGKNYPKPILEHSLS 452 (470)
Q Consensus 387 R~~np~~q~~k~Dp~g~yIr~w~PeL~~~p~~~ih~pw~~~~~~~~~~~~~~~~~YP~pivd~~~~ 452 (470)
..+|.||+|+ ++.+...++.|++.+.+ ..|..+..|...|.+|++.
T Consensus 435 ------------~~~~~yI~km----s~yc~~c~y~~~~~~g~----~~cp~~~lYW~Fl~rh~~~ 480 (522)
T 3zxs_A 435 ------------VSSGAYIDRM----SDYCRGCAYAVKDRTGP----RACPFNLLYWHFLNRHRAR 480 (522)
T ss_dssp ------------CCCHHHHHHH----CSCGGGSSSBTTCSSST----TBCHHHHHHHHHHHHTHHH
T ss_pred ------------CCchHHHHHH----hccccCCccCccccCCC----ccCCCccchHHHHHHHHHH
Confidence 4569999998 68888889999988764 3577777899999888765
No 14
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=81.41 E-value=9.6 Score=30.98 Aligned_cols=102 Identities=9% Similarity=0.106 Sum_probs=60.4
Q ss_pred cEEEEEEecCCCCCccccCC---CCcHHHHHHHHHHHHHHHHHHhcCCC---cEEEEEcChHHHHHH-HHHhcCcCEEEE
Q psy14494 2 EVYCVFIFDKNILDPLRSQG---IIEDRRIEFIFKSIIELSINLQNYDS---DLIIRYAIASKEIKK-LVIKLNIDAVMI 74 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~~~~~~---~~~~~r~~Fl~esL~~L~~~L~~~G~---~L~v~~g~~~~~l~~-L~~~~~~~~V~~ 74 (470)
+|..++|.++.......... ........-..+.|.++.+.+.+.|+ ...+..|++.+.|.+ .+++.+++-|++
T Consensus 35 ~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~ 114 (146)
T 3s3t_A 35 NLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVL 114 (146)
T ss_dssp EEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEE
T ss_pred EEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEE
Confidence 46778888875432211000 00012233455677888888888887 456778999999999 999999999988
Q ss_pred ecc-CChHHH-HHHHHHHHHHHHcCcEEEEE
Q psy14494 75 NHD-YEPQAI-IRDKLIKKELKVIGCKFFSY 103 (470)
Q Consensus 75 ~~~-~~~~~~-~rd~~v~~~l~~~~v~~~~~ 103 (470)
-.. .+.... -.-....+.+...+|++..+
T Consensus 115 G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 115 GATGTNSPHRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp ESCCSSCTTTCSSCHHHHHHHHHCSSEEEEE
T ss_pred CCCCCCCcceEEEcchHHHHhccCCCCEEEe
Confidence 743 111111 01122344455557776543
No 15
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=78.17 E-value=19 Score=29.92 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=49.2
Q ss_pred cEEEEEEecCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHhcCCCcEEE----EEcChHHHHHHHHHhcCcCEEEEec
Q psy14494 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLII----RYAIASKEIKKLVIKLNIDAVMINH 76 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v----~~g~~~~~l~~L~~~~~~~~V~~~~ 76 (470)
+|..++|.++... . ......-..+.|.++.+.+++.|+++.+ ..|++.+.|.+.+++.+++-|++-.
T Consensus 55 ~l~llhV~~~~~~----~----~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~ 125 (155)
T 3dlo_A 55 PVYVVHSLPGGGR----T----KDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGI 125 (155)
T ss_dssp CEEEEEEECCSTT----S----CHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEEEEEEEcCCCc----c----cHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECC
Confidence 4677888876421 1 2333344567788888888888988654 2489999999999999999988864
No 16
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=73.61 E-value=22 Score=28.49 Aligned_cols=66 Identities=8% Similarity=0.034 Sum_probs=44.0
Q ss_pred HHHHHhcCCCc---EEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEe
Q psy14494 38 LSINLQNYDSD---LIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 38 L~~~L~~~G~~---L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~ 104 (470)
|++-+++.|++ ..+..|++.+.|.+.+++.+++-|++-...+...+ .-....+.+...+|++..+.
T Consensus 69 l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-lgs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 69 LLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSK-LMSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp HHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEECCCCHHH-HHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCCCchhhh-hcchHHHHHhcCCCCEEEee
Confidence 33334445655 46778999999999999999999888765222222 33444555666678887654
No 17
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=68.47 E-value=35 Score=27.30 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhcCCC-----cEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHH-HHHHHHHHHHHHcCcEEEEE
Q psy14494 30 FIFKSIIELSINLQNYDS-----DLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAI-IRDKLIKKELKVIGCKFFSY 103 (470)
Q Consensus 30 Fl~esL~~L~~~L~~~G~-----~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~-~rd~~v~~~l~~~~v~~~~~ 103 (470)
...+.++.+++.+++.|. ...+..|++.+.|.+.+++.+++-|++-..-..... -.-....+.+....|++..+
T Consensus 63 ~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 63 LREGSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCCCCCeeeeeccHHHHHHHhCCCCEEEe
Confidence 445677777887888875 356778999999999999999999998765111111 01122344455557776543
No 18
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=67.70 E-value=35 Score=28.49 Aligned_cols=73 Identities=5% Similarity=-0.054 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCCc---EEEEEcChHHHHHHHHHhcCcCEEEEecc-CChHHHHHH-HHHHHHHHHcCcEEEEEe
Q psy14494 32 FKSIIELSINLQNYDSD---LIIRYAIASKEIKKLVIKLNIDAVMINHD-YEPQAIIRD-KLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~---L~v~~g~~~~~l~~L~~~~~~~~V~~~~~-~~~~~~~rd-~~v~~~l~~~~v~~~~~~ 104 (470)
.+.|.++.+.+++.|++ ..+..|++.+.|.+++++.+++-|++-.. -+......- ....+.+....|++..+.
T Consensus 80 ~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~ 157 (163)
T 1tq8_A 80 YEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVH 157 (163)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEe
Confidence 34567777778888877 45668999999999999999999888754 232222111 223445555678887764
No 19
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=67.53 E-value=16 Score=32.05 Aligned_cols=66 Identities=6% Similarity=-0.060 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEecc-------------CChHHHHHHHHHHHHHHHcC
Q psy14494 32 FKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHD-------------YEPQAIIRDKLIKKELKVIG 97 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~-------------~~~~~~~rd~~v~~~l~~~~ 97 (470)
..++.++=+.|++.|+++.|..+.+...+..+++.+++..++.+.- .......--..+...+++.|
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~K~~~~~~~~~~~~ 172 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMG 172 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCEEEECEEEEETTEEEEEEESSCSSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEcceEEECCEEeeeecCCCCcchHHHHHHHHHHHHcC
Confidence 5677788888999999999999999999999999999987665421 11112233345667777777
No 20
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=66.80 E-value=19 Score=29.58 Aligned_cols=102 Identities=7% Similarity=0.013 Sum_probs=58.9
Q ss_pred cEEEEEEecCCCCCccccC-CCCcHHHHHHHHHHHHHHHHHHhcCCCc---EEEEE-cChHHHHHHH-HHhcCcCEEEEe
Q psy14494 2 EVYCVFIFDKNILDPLRSQ-GIIEDRRIEFIFKSIIELSINLQNYDSD---LIIRY-AIASKEIKKL-VIKLNIDAVMIN 75 (470)
Q Consensus 2 ~vl~vfi~dp~~~~~~~~~-~~~~~~r~~Fl~esL~~L~~~L~~~G~~---L~v~~-g~~~~~l~~L-~~~~~~~~V~~~ 75 (470)
+|..++|.++......... .........-..+.|.++.+.+++.|++ ..+.. |++.+.|.+. +++.+++-|+.-
T Consensus 47 ~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G 126 (156)
T 3fg9_A 47 PLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTG 126 (156)
T ss_dssp CEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEE
T ss_pred EEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEEC
Confidence 4677888887543211000 0001122334556777777888888873 45667 9999999998 999999998887
Q ss_pred ccC-ChHHHHHHHHHHHHHHHcCcEEEEE
Q psy14494 76 HDY-EPQAIIRDKLIKKELKVIGCKFFSY 103 (470)
Q Consensus 76 ~~~-~~~~~~rd~~v~~~l~~~~v~~~~~ 103 (470)
..- +...+-.-....+.+....|++..+
T Consensus 127 ~~g~~~~~~~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 127 ADTEFPHSKIAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp TTCCCTTSSSCSCHHHHHHHHCSSEEEEE
T ss_pred CCCCCccceeecchHHHHHHhCCCCEEEe
Confidence 542 1111111112334445556776543
No 21
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=65.51 E-value=27 Score=29.10 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCCcE----EEEEcChHHHHHHHHHhcCcCEEEEeccC-ChHHHH-HHHHHHHHHHHcCcEEEEEe
Q psy14494 31 IFKSIIELSINLQNYDSDL----IIRYAIASKEIKKLVIKLNIDAVMINHDY-EPQAII-RDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 31 l~esL~~L~~~L~~~G~~L----~v~~g~~~~~l~~L~~~~~~~~V~~~~~~-~~~~~~-rd~~v~~~l~~~~v~~~~~~ 104 (470)
..+.|+++.+.++..|++. .+..|++.+.|.+.+++.+++-|++-..- +..... .-....+.+...+|++..+.
T Consensus 76 ~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~ 155 (170)
T 2dum_A 76 ASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIK 155 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEc
Confidence 4456667777777667654 56689999999999999999998887542 221111 11233444555678877664
No 22
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=64.98 E-value=40 Score=27.23 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccC-ChHHHHHHHHHHHHHHHcCcEEEEEe
Q psy14494 32 FKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDY-EPQAIIRDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~-~~~~~~rd~~v~~~l~~~~v~~~~~~ 104 (470)
.+.|+++.+++.-.+....+..|++.+.|.+.+++.+++-|+.-..- +....-.-....+.+....|++..+.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 146 (150)
T 3tnj_A 73 KQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVR 146 (150)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEEE
T ss_pred HHHHHHHHHHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEEe
Confidence 34444444443111134678899999999999999999998887432 21111111223445566678876654
No 23
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=64.91 E-value=31 Score=27.75 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhcCCCc-----EEEEEcChHHHHHHHHHhcCcCEEEEecc
Q psy14494 29 EFIFKSIIELSINLQNYDSD-----LIIRYAIASKEIKKLVIKLNIDAVMINHD 77 (470)
Q Consensus 29 ~Fl~esL~~L~~~L~~~G~~-----L~v~~g~~~~~l~~L~~~~~~~~V~~~~~ 77 (470)
.-..+.|..+.+.+++.|++ ..+..|++.+.|.+.+++.+++-|++-..
T Consensus 66 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 119 (147)
T 3hgm_A 66 DYATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQ 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHHHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 44566778888888888865 45678999999999999999999988643
No 24
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=57.84 E-value=21 Score=29.49 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCCcE--EEEEcChHHHHHHHHHhcCcCEEEEecc-CChHHHH-HHHHHHHHHHHcCcEEEEEe
Q psy14494 31 IFKSIIELSINLQNYDSDL--IIRYAIASKEIKKLVIKLNIDAVMINHD-YEPQAII-RDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 31 l~esL~~L~~~L~~~G~~L--~v~~g~~~~~l~~L~~~~~~~~V~~~~~-~~~~~~~-rd~~v~~~l~~~~v~~~~~~ 104 (470)
..+.|.++.+.++..|++. .+..|++.+.|.+.+++.+++-|++-.. -+...+. .-....+.+....|++..+.
T Consensus 81 ~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~ 158 (162)
T 1mjh_A 81 AKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEe
Confidence 3455777777788888774 4668999999999999999999888753 2211110 11223344455577776653
No 25
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=55.43 E-value=1.3e+02 Score=27.73 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCCC---cEEEEEcChHHHHHHHHHhcCcCEEEEecc-CChHHH-HHHHHHHHHHHHcCcEEEEEeC
Q psy14494 31 IFKSIIELSINLQNYDS---DLIIRYAIASKEIKKLVIKLNIDAVMINHD-YEPQAI-IRDKLIKKELKVIGCKFFSYKD 105 (470)
Q Consensus 31 l~esL~~L~~~L~~~G~---~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~-~~~~~~-~rd~~v~~~l~~~~v~~~~~~~ 105 (470)
.-+..+.|++-+++.|+ ...+..|++.+.|.+.+++.+++-|++-.. -+.... -.-....+.+....|++..+..
T Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~ 305 (319)
T 3olq_A 226 RGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKP 305 (319)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECC
Confidence 33444555555566675 477889999999999999999998887652 233322 2334445566667888877754
Q ss_pred c
Q psy14494 106 Q 106 (470)
Q Consensus 106 ~ 106 (470)
.
T Consensus 306 ~ 306 (319)
T 3olq_A 306 D 306 (319)
T ss_dssp T
T ss_pred C
Confidence 3
No 26
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=53.28 E-value=53 Score=27.44 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCCcE--EEEEcChHHHHHHHHHhcCcCEEEEecc-CChHHHH-HHHHHHHHHHHcCcEEEEEe
Q psy14494 32 FKSIIELSINLQNYDSDL--IIRYAIASKEIKKLVIKLNIDAVMINHD-YEPQAII-RDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~L--~v~~g~~~~~l~~L~~~~~~~~V~~~~~-~~~~~~~-rd~~v~~~l~~~~v~~~~~~ 104 (470)
.+.|+.+.+.+.+.|+++ .+..|++.+.|.+.+++.+++-|++-.. -+..... .-....+.+....|++..+.
T Consensus 86 ~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~ 162 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162 (175)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEc
Confidence 345666667777778765 4568999999999999999999888754 2222221 12233445566678887764
No 27
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=52.04 E-value=49 Score=27.26 Aligned_cols=72 Identities=4% Similarity=-0.083 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCCcEE---EEEcChHHHHHHHHHhcC--cCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEE
Q psy14494 32 FKSIIELSINLQNYDSDLI---IRYAIASKEIKKLVIKLN--IDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSY 103 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~L~---v~~g~~~~~l~~L~~~~~--~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~ 103 (470)
.+.|..--+.|++.|+... +..++|...|.+.+.+++ ++.|+....+-..+.-....+....+..|+++..+
T Consensus 57 ~~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~DwasrAr~~gvPVlhl 133 (138)
T 2iel_A 57 EEEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAERFGLPVIHV 133 (138)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHHHHGGGGSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhccHHHHHHhcCCCEEEE
Confidence 4556666666788898876 678899999999999999 99888776543322222222333333358988654
No 28
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=51.74 E-value=4.4 Score=32.30 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.2
Q ss_pred hhhhcCCcchhHHhhccccccCC
Q psy14494 394 QSKKFDYQGIFIRKYLPQLSKLS 416 (470)
Q Consensus 394 q~~k~Dp~g~yIr~w~PeL~~~p 416 (470)
...||||+|.|.+++--+++.++
T Consensus 86 L~~KyDP~g~y~~ky~~~~~~~~ 108 (109)
T 2gvs_A 86 LKAKYDPDGTYSKKYEDREKELH 108 (109)
T ss_dssp HHHHHCTTCTTTHHHHTTTCCSC
T ss_pred HHHHHCCCchHHHHHHHHHHHcc
Confidence 35699999999999988887664
No 29
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=50.59 E-value=33 Score=33.22 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=9.1
Q ss_pred EEEEEEecCCC
Q psy14494 3 VYCVFIFDKNI 13 (470)
Q Consensus 3 vl~vfi~dp~~ 13 (470)
|-||||||-.-
T Consensus 71 I~PvfVFDG~~ 81 (352)
T 3qe9_Y 71 IKPILVFDGCT 81 (352)
T ss_dssp CEEEEEECCSC
T ss_pred CEEEEEECCCC
Confidence 67999999755
No 30
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=50.39 E-value=25 Score=25.96 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEE-cChH---HHHHHHHHhcCcCE-EEEeccCChHHHHHHHHHHHHHHHcC
Q psy14494 32 FKSIIELSINLQNYDSDLIIRY-AIAS---KEIKKLVIKLNIDA-VMINHDYEPQAIIRDKLIKKELKVIG 97 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~L~v~~-g~~~---~~l~~L~~~~~~~~-V~~~~~~~~~~~~rd~~v~~~l~~~~ 97 (470)
.+-++|.-++.+..|-||+++. |... ..+..-+++-|+.- |.- ...|++ ..++|+++++..|
T Consensus 37 sqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlk--stdpee--ltqrvreflktag 103 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLK--STDPEE--LTQRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEE--CCCHHH--HHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhc--cCCHHH--HHHHHHHHHHhcc
Confidence 3567777888888999998874 4443 34444455556542 332 345654 3456788887766
No 31
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=48.82 E-value=45 Score=32.04 Aligned_cols=44 Identities=9% Similarity=-0.076 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEe
Q psy14494 32 FKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMIN 75 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~ 75 (470)
.+-+..+++-|+.+|++.++..+++.+++..|++.--+..|+++
T Consensus 129 ~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~ 172 (340)
T 1b43_A 129 EMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQ 172 (340)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECS
T ss_pred HHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEcc
Confidence 34566778888889999999889999999999887656666554
No 32
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=48.76 E-value=1.2e+02 Score=25.46 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHhcCCCcEEEEEcChHHHHHHHHHhc--CcCEEEEecc-CChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCc
Q psy14494 37 ELSINLQNYDSDLIIRYAIASKEIKKLVIKL--NIDAVMINHD-YEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNE 113 (470)
Q Consensus 37 ~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~--~~~~V~~~~~-~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~ 113 (470)
.+++.-+++|+.|.++..+.+..|.+.+++. +.+.|+.|.. |+... -++.++++..++++.+++-..++..+.
T Consensus 34 ~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtS----vAlrDAl~~v~~P~VEVHiSNi~aRE~ 109 (154)
T 1uqr_A 34 HLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTS----VAIRDALLAVSIPFIEVHLSNVHAREP 109 (154)
T ss_dssp HHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHC----HHHHHHHHHHTCCEEEEESSCGGGSCG
T ss_pred HHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccch----HHHHHHHHhCCCCEEEEEecCcccccc
Confidence 3444445679999999998887776666654 4678898842 33332 245555666689999998776665554
No 33
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=45.43 E-value=34 Score=33.30 Aligned_cols=40 Identities=13% Similarity=-0.038 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEE
Q psy14494 35 IIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMI 74 (470)
Q Consensus 35 L~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~ 74 (470)
+..+++-|+.+|++.++..|++.+.+..|++.--+..|++
T Consensus 146 ~~~i~~lL~~~GIp~i~apgEADaqiA~La~~g~~~~I~S 185 (363)
T 3ory_A 146 VRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASAS 185 (363)
T ss_dssp HHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHHHHHCCCCEEEeCccHHHHHHHHHHCCCeEEEEC
Confidence 6677777788888888888887778877776533444444
No 34
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=45.32 E-value=31 Score=33.33 Aligned_cols=43 Identities=14% Similarity=-0.121 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEE
Q psy14494 32 FKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMI 74 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~ 74 (470)
.+-+..+++-|+.+|++.++..|++.+++..|++.-.+..|++
T Consensus 134 ~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~~i~s 176 (341)
T 3q8k_A 134 KQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 176 (341)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhcCCeEEEEc
Confidence 4556777888899999999999999999999998754444443
No 35
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=45.16 E-value=1.2e+02 Score=25.19 Aligned_cols=70 Identities=10% Similarity=-0.025 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcEEEEE-------------cChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHH
Q psy14494 24 EDRRIEFIFKSIIELSINLQNYDSDLIIRY-------------AIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIK 90 (470)
Q Consensus 24 ~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~-------------g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~ 90 (470)
+..+-+.=++-|+.|++.-++.++++.+.. |+....|.++|++.++ .|+++ |..+.
T Consensus 49 ~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~a-~lvTn----------D~~l~ 117 (142)
T 3i8o_A 49 GREIGYKGIEELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETNS-ILLTS----------DWIQY 117 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTTC-EEEES----------CHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhCC-EEEcC----------CHHHH
Confidence 334445556666677665556788888763 3456679999999886 45565 34667
Q ss_pred HHHHHcCcEEEEEe
Q psy14494 91 KELKVIGCKFFSYK 104 (470)
Q Consensus 91 ~~l~~~~v~~~~~~ 104 (470)
+.++..||++....
T Consensus 118 kvA~~~GI~V~~l~ 131 (142)
T 3i8o_A 118 NLAKAQGIEAYFLE 131 (142)
T ss_dssp HHHHHTTCCEEECC
T ss_pred HHHHHcCCEEEEec
Confidence 77788899997753
No 36
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=44.46 E-value=1.8e+02 Score=26.34 Aligned_cols=76 Identities=11% Similarity=0.018 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEE---E-EcChHHHHHHHHHhcCcCEEEEeccC-ChHHHHH-HHHHHHHHHHcCcEEEE
Q psy14494 29 EFIFKSIIELSINLQNYDSDLII---R-YAIASKEIKKLVIKLNIDAVMINHDY-EPQAIIR-DKLIKKELKVIGCKFFS 102 (470)
Q Consensus 29 ~Fl~esL~~L~~~L~~~G~~L~v---~-~g~~~~~l~~L~~~~~~~~V~~~~~~-~~~~~~r-d~~v~~~l~~~~v~~~~ 102 (470)
.-..+.|.++.+.+++.|++... . .|++.+.| ++++.+++-|+.-..- +...... -....+.+...+|++..
T Consensus 82 ~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlv 159 (294)
T 3loq_A 82 EKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYI 159 (294)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEE
Confidence 34556788888888888988765 4 79999999 8899999999987543 2222111 12345566667888877
Q ss_pred EeCc
Q psy14494 103 YKDQ 106 (470)
Q Consensus 103 ~~~~ 106 (470)
+...
T Consensus 160 v~~~ 163 (294)
T 3loq_A 160 FKHD 163 (294)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 6543
No 37
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=43.17 E-value=51 Score=26.09 Aligned_cols=45 Identities=7% Similarity=0.021 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhcCCCc--EEEEEcChHHHHHHHHHhcCcCEEEEec
Q psy14494 30 FIFKSIIELSINLQNYDSD--LIIRYAIASKEIKKLVIKLNIDAVMINH 76 (470)
Q Consensus 30 Fl~esL~~L~~~L~~~G~~--L~v~~g~~~~~l~~L~~~~~~~~V~~~~ 76 (470)
-..+.|+++.+.+.+.|++ ..+..|++.+.|.+.++ +++-|++-.
T Consensus 63 ~~~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~ 109 (138)
T 3idf_A 63 KAKLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGS 109 (138)
T ss_dssp HHHHHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeC
Confidence 3456677778888888876 56678999999999988 899888864
No 38
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=43.06 E-value=38 Score=29.70 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHh----cCcCEEEE-eccCChHHHHHHHHHHHHHHHcCcEEEE
Q psy14494 28 IEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIK----LNIDAVMI-NHDYEPQAIIRDKLIKKELKVIGCKFFS 102 (470)
Q Consensus 28 ~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~----~~~~~V~~-~~~~~~~~~~rd~~v~~~l~~~~v~~~~ 102 (470)
..+|.++...+...+ ..|..|++..--.......|++. -+|..|++ ..+|....... ..-.+.|++.||++..
T Consensus 67 ~~Ai~~a~~~l~~~~-~~g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~-~~g~~~L~~aGI~V~~ 144 (190)
T 2nyt_A 67 EAFFNTILPAFDPAL-RYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEI-QAALKKLKEAGCKLRI 144 (190)
T ss_pred HHHHHHHHHhcCccc-cCCeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHH-HHHHHHHHHCCCEEEE
Confidence 345555543332222 23788888654443444444433 38998887 56663211111 2445667889999986
Q ss_pred E
Q psy14494 103 Y 103 (470)
Q Consensus 103 ~ 103 (470)
.
T Consensus 145 ~ 145 (190)
T 2nyt_A 145 M 145 (190)
T ss_pred e
Confidence 4
No 39
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=42.97 E-value=1.2e+02 Score=27.35 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEc--Ch---HHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEE
Q psy14494 29 EFIFKSIIELSINLQNYDSDLIIRYA--IA---SKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSY 103 (470)
Q Consensus 29 ~Fl~esL~~L~~~L~~~G~~L~v~~g--~~---~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~ 103 (470)
.|..+-+..+++.++++|..+.+... ++ .+.+..+.. .+++.|+..... . ...+. +.+.+.+.||++..+
T Consensus 18 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~-~--~~~~~-~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 18 DWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIA-QKPDAIIEQLGN-L--DVLNP-WLQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-HCCSEEEEESSC-H--HHHHH-HHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCC-h--hhhHH-HHHHHHHCCCcEEEe
Confidence 35667788888899999999988854 23 234554444 489988876321 1 12222 334456679999888
Q ss_pred eCc
Q psy14494 104 KDQ 106 (470)
Q Consensus 104 ~~~ 106 (470)
+..
T Consensus 93 ~~~ 95 (291)
T 3l49_A 93 DTA 95 (291)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 40
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=42.24 E-value=24 Score=29.97 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=38.6
Q ss_pred HHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCc
Q psy14494 38 LSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGC 98 (470)
Q Consensus 38 L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v 98 (470)
+=+.|++.|+++.|..+++...+..+++..++. ++... .+- -..+...++..|+
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~--~~k----~~~l~~~~~~~~~ 100 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP-VLHGI--DRK----DLALKQWCEEQGI 100 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESC--SCH----HHHHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCC--CCh----HHHHHHHHHHcCC
Confidence 456677889999999999999999999999999 55543 221 2345555555564
No 41
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=42.19 E-value=1.1e+02 Score=25.91 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=47.1
Q ss_pred hcCCCcEEEEEcChHHHHHHHHHh---cCcCEEEEec-cCChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcc
Q psy14494 43 QNYDSDLIIRYAIASKEIKKLVIK---LNIDAVMINH-DYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEI 114 (470)
Q Consensus 43 ~~~G~~L~v~~g~~~~~l~~L~~~---~~~~~V~~~~-~~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i 114 (470)
.++|+.+.++..+.+..|.+.+.+ .+++.|+.|. .|+-... ++.+++...++++.+++-..+...+.+
T Consensus 55 ~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaRE~F 126 (167)
T 3kip_A 55 KNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSV----GIRDALLGTAIPFIEVHITNVHQREPF 126 (167)
T ss_dssp TCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCH----HHHHHHHHTTCCEEEEESSCGGGSCGG
T ss_pred ccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccH----HHHHHHHhcCCCEEEEEcCCccccccc
Confidence 467899999988887776555554 2478899985 3443333 455556667899999987777666544
No 42
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=41.85 E-value=1.2e+02 Score=28.27 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEc--ChH---HHHHHHHHh-cCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEE
Q psy14494 30 FIFKSIIELSINLQNYDSDLIIRYA--IAS---KEIKKLVIK-LNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSY 103 (470)
Q Consensus 30 Fl~esL~~L~~~L~~~G~~L~v~~g--~~~---~~l~~L~~~-~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~ 103 (470)
|..+-+..+++.++++|..+.+... ++. +.+..++.. .+++.|+..-+... ...+.+.+.+.||++..+
T Consensus 18 f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~-----~~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 18 FWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYV-----APQILRLSQGSGIKLFIV 92 (350)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSH-----HHHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhh-----HHHHHHHHHhCCCcEEEE
Confidence 5566677777788888999988854 332 456677775 68998888642221 223344566789999988
Q ss_pred eCc
Q psy14494 104 KDQ 106 (470)
Q Consensus 104 ~~~ 106 (470)
+..
T Consensus 93 ~~~ 95 (350)
T 3h75_A 93 NSP 95 (350)
T ss_dssp ESC
T ss_pred cCC
Confidence 754
No 43
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=40.49 E-value=1.2e+02 Score=27.64 Aligned_cols=72 Identities=10% Similarity=0.060 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCCcE--EEEEcChHHHHHHHHHhcCcCEEEEecc-CChHHH-HHHHHHHHHHHHcCcEEEEEe
Q psy14494 33 KSIIELSINLQNYDSDL--IIRYAIASKEIKKLVIKLNIDAVMINHD-YEPQAI-IRDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 33 esL~~L~~~L~~~G~~L--~v~~g~~~~~l~~L~~~~~~~~V~~~~~-~~~~~~-~rd~~v~~~l~~~~v~~~~~~ 104 (470)
+.++++.+.|++.|++. .+..|++.+.|.+.+++.+++-|++-.. -+.... -.-....+.+....|++..+.
T Consensus 214 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 214 ADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEEC
Confidence 35667777788788763 4457889999999999989998877543 222222 222334455666677776653
No 44
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=40.23 E-value=23 Score=30.92 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=39.3
Q ss_pred HHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCc
Q psy14494 40 INLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGC 98 (470)
Q Consensus 40 ~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v 98 (470)
+.|++.|+++.|..+++...+..++++.++..++.... + --..+...++..|+
T Consensus 62 ~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~k--~----k~~~~~~~~~~~~~ 114 (195)
T 3n07_A 62 KALMNAGIEIAIITGRRSQIVENRMKALGISLIYQGQD--D----KVQAYYDICQKLAI 114 (195)
T ss_dssp HHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSCS--S----HHHHHHHHHHHHCC
T ss_pred HHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCCC--C----cHHHHHHHHHHhCC
Confidence 45677899999999999999999999999998876542 2 12345555555565
No 45
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=39.41 E-value=22 Score=31.59 Aligned_cols=55 Identities=16% Similarity=0.098 Sum_probs=40.5
Q ss_pred HHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCc
Q psy14494 38 LSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGC 98 (470)
Q Consensus 38 L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v 98 (470)
+=+.|++.|+++.|..+++...+..+++..++..++.... +- -..+...++..|+
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~k--~K----~~~l~~~~~~lg~ 138 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQS--DK----LVAYHELLATLQC 138 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCS--SH----HHHHHHHHHHHTC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcccC--Ch----HHHHHHHHHHcCc
Confidence 4566778899999999999999999999999998876541 11 2345555555564
No 46
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=39.11 E-value=77 Score=25.02 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=42.1
Q ss_pred HHHHHHHHHH--HhcCC-CcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEE
Q psy14494 32 FKSIIELSIN--LQNYD-SDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFS 102 (470)
Q Consensus 32 ~esL~~L~~~--L~~~G-~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~ 102 (470)
.+.|+++ +. +...| +...+..|++.+.|.+.+++.+++-|++-.. +. ....+.+...+|++..
T Consensus 71 ~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-g~------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 71 ERRLREV-WEKLTGSTEIPGVEYRIGPLSEEVKKFVEGKGYELVVWACY-PS------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp HHHHHHH-HHHHHSCCCCCCEEEECSCHHHHHHHHHTTSCCSEEEECSC-CG------GGTHHHHHHSSSEEEE
T ss_pred HHHHHHH-HHHhhccCCcceEEEEcCCHHHHHHHHHHhcCCCEEEEeCC-CC------chHHHHHHhCCCceEe
Confidence 3455555 55 34444 5566778999999999999999999988753 22 2233445555677654
No 47
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=38.99 E-value=1.7e+02 Score=24.54 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCCcEEEEEcChHHHHHHHHHhc--CcCEEEEecc-CChHHHHHHHHHHHHHHHcC-cEEEEEeCceeEcC
Q psy14494 36 IELSINLQNYDSDLIIRYAIASKEIKKLVIKL--NIDAVMINHD-YEPQAIIRDKLIKKELKVIG-CKFFSYKDQVIFEK 111 (470)
Q Consensus 36 ~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~--~~~~V~~~~~-~~~~~~~rd~~v~~~l~~~~-v~~~~~~~~~L~~p 111 (470)
+.+++.-+++|+.|.++..+.+..|.+.+++. +.+.|+.|.. |+... -++.+++...+ +++.+++-..++..
T Consensus 38 ~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtS----vAlrDAl~~v~~~P~VEVHiSNi~aR 113 (156)
T 1gtz_A 38 ALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTS----VAILDALNTCDGLPVVEVHISNIHQR 113 (156)
T ss_dssp HHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHC----HHHHHHHHTSTTCCEEEEESSCGGGS
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhcccc----HHHHHHHHhcCCCCEEEEEecCcccc
Confidence 34444455779999999888776665555443 4778999842 22222 34666677778 99999987766665
Q ss_pred Cc
Q psy14494 112 NE 113 (470)
Q Consensus 112 ~~ 113 (470)
+.
T Consensus 114 E~ 115 (156)
T 1gtz_A 114 EP 115 (156)
T ss_dssp CG
T ss_pred cc
Confidence 54
No 48
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=38.88 E-value=90 Score=26.16 Aligned_cols=79 Identities=6% Similarity=0.019 Sum_probs=46.8
Q ss_pred HHHHHHHHHHh----cCCCcEEEEEcChHHHHHHHHHhc--CcCEEEEec-cCChHHHHHHHHHHHHHHHcCcEEEEEeC
Q psy14494 33 KSIIELSINLQ----NYDSDLIIRYAIASKEIKKLVIKL--NIDAVMINH-DYEPQAIIRDKLIKKELKVIGCKFFSYKD 105 (470)
Q Consensus 33 esL~~L~~~L~----~~G~~L~v~~g~~~~~l~~L~~~~--~~~~V~~~~-~~~~~~~~rd~~v~~~l~~~~v~~~~~~~ 105 (470)
.+|.++.+.|+ ++|..+.++..+.+..|.+.+++. +++.|+.|. .|+........+++. +...++++.+++-
T Consensus 29 ~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~-l~~~~~P~VEVHi 107 (151)
T 3u80_A 29 QDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHM-VIDENLPLMEVHI 107 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHH-HHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHH-HhhcCCCEEEEEc
Confidence 34455444444 578999999888777665555442 367788885 455444433333222 3445899999986
Q ss_pred ceeEcCC
Q psy14494 106 QVIFEKN 112 (470)
Q Consensus 106 ~~L~~p~ 112 (470)
..++.++
T Consensus 108 SNi~aRE 114 (151)
T 3u80_A 108 SNPSARD 114 (151)
T ss_dssp SCCC---
T ss_pred CCccccc
Confidence 6665543
No 49
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=38.26 E-value=28 Score=30.00 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=41.0
Q ss_pred HHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCc
Q psy14494 38 LSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGC 98 (470)
Q Consensus 38 L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v 98 (470)
+=+.|++.|+++.+..|.+...+..+++..++..++.....-+ ..+...++..|+
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~~~K~------~~~~~~~~~~g~ 108 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQGREDKL------VVLDKLLAELQL 108 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSCSCHH------HHHHHHHHHHTC
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCcCChH------HHHHHHHHHcCC
Confidence 4456778899999999999999999999999998876541111 455666666565
No 50
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=37.00 E-value=1.1e+02 Score=24.97 Aligned_cols=57 Identities=12% Similarity=0.008 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcE
Q psy14494 37 ELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCK 99 (470)
Q Consensus 37 ~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~ 99 (470)
++=+.|++.|+++.+..+.+...+..+++..++..++...-.. ...+...++..++.
T Consensus 43 ~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~kp~------~~~~~~~~~~~~~~ 99 (162)
T 2p9j_A 43 IGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIYTGSYKK------LEIYEKIKEKYSLK 99 (162)
T ss_dssp HHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEECC--C------HHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccCCCCC------HHHHHHHHHHcCCC
Confidence 3444556789999999999989999999999998766542222 23445556666653
No 51
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=36.90 E-value=20 Score=35.29 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCc------CEEEEe
Q psy14494 31 IFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNI------DAVMIN 75 (470)
Q Consensus 31 l~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~------~~V~~~ 75 (470)
+...+.+|=+.|++.|++++|..|...+.+..++++.|+ +.|+.+
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~ 272 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGL 272 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEE
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEe
Confidence 467889999999999999999999999999999998654 456665
No 52
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=36.72 E-value=1.4e+02 Score=27.17 Aligned_cols=68 Identities=13% Similarity=0.026 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCC---cEEEEEcChHHHHHHHHHhcCcCEEEEecc-CChHHH-HHHHHHHHHHHHcCcEEEEE
Q psy14494 36 IELSINLQNYDS---DLIIRYAIASKEIKKLVIKLNIDAVMINHD-YEPQAI-IRDKLIKKELKVIGCKFFSY 103 (470)
Q Consensus 36 ~~L~~~L~~~G~---~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~-~~~~~~-~rd~~v~~~l~~~~v~~~~~ 103 (470)
+.|++-+++.|+ ...+..|++.+.|.+++++.+++-|++-.. -+.... -.-....+.+....|++..+
T Consensus 202 ~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv 274 (290)
T 3mt0_A 202 EACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVL 274 (290)
T ss_dssp HHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEE
Confidence 334444444465 467889999999999999999998887643 222111 11123344555567777665
No 53
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=36.64 E-value=1.2e+02 Score=25.22 Aligned_cols=74 Identities=8% Similarity=0.120 Sum_probs=50.0
Q ss_pred HHHHHHhcCCCcEEEEEcChHHHHHHHHHhc--CcCEEEEec-cCChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCc
Q psy14494 37 ELSINLQNYDSDLIIRYAIASKEIKKLVIKL--NIDAVMINH-DYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNE 113 (470)
Q Consensus 37 ~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~--~~~~V~~~~-~~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~ 113 (470)
.+++.-+++|..|.++..+.+..|.+.+++. +.+.|+.|. .|+.... ++.++++..++++.+++-..++.++.
T Consensus 33 ~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~ 108 (143)
T 1gqo_A 33 DLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSY----AIRDAVSSISLPVVEVHLSNLYAREE 108 (143)
T ss_dssp HHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSCG
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCcccccc
Confidence 3344445668999999988887765555543 467888885 3443332 45666777799999998777766554
Q ss_pred c
Q psy14494 114 I 114 (470)
Q Consensus 114 i 114 (470)
+
T Consensus 109 F 109 (143)
T 1gqo_A 109 F 109 (143)
T ss_dssp G
T ss_pred c
Confidence 3
No 54
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=36.59 E-value=41 Score=30.60 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCcEEEEE--cC---hHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEE
Q psy14494 35 IIELSINLQNYDSDLIIRY--AI---ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFF 101 (470)
Q Consensus 35 L~~L~~~L~~~G~~L~v~~--g~---~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~ 101 (470)
+...+..-+.+|+|+++.. |+ -.+.|.++.++.+++.|++-.-...+.+.|.+.+ |...|++..
T Consensus 52 ~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi~s~yqr~r~e~v---c~~~gl~~~ 120 (237)
T 3rjz_A 52 ANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGALASKYQRKRIEKV---AKELGLEVY 120 (237)
T ss_dssp SSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC---CCSHHHHHHHH---HHHTTCEEE
T ss_pred HHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCcchHHHHHHHHHH---HHHcCCEEE
Confidence 3445555667799999874 32 3456677777789999988766666666665555 444466543
No 55
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.23 E-value=84 Score=23.87 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEEc--ChHHHHHHHHHhcCcCEEEEec
Q psy14494 33 KSIIELSINLQNYDSDLIIRYA--IASKEIKKLVIKLNIDAVMINH 76 (470)
Q Consensus 33 esL~~L~~~L~~~G~~L~v~~g--~~~~~l~~L~~~~~~~~V~~~~ 76 (470)
+.|+.++.-+++.|..+-.... +-.+.+.+|+++++++.|+.--
T Consensus 13 etlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvv 58 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVV 58 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred HHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 5677788888888877655533 2346788999999998777653
No 56
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=35.38 E-value=2.2e+02 Score=25.29 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcC--hHH--HHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEeC
Q psy14494 30 FIFKSIIELSINLQNYDSDLIIRYAI--ASK--EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKD 105 (470)
Q Consensus 30 Fl~esL~~L~~~L~~~G~~L~v~~g~--~~~--~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~~ 105 (470)
|..+-+..+++.++++|..+.+...+ ... .+.+.+...+++.|+...... +. ..+.+.+.|+++..++.
T Consensus 21 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~-~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 21 FSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------PQ-TVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC------HH-HHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc------HH-HHHHHHHCCCCEEEEec
Confidence 66777888889999999999988643 221 223333456899888875333 22 33445667999988864
No 57
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=33.97 E-value=1.3e+02 Score=27.35 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcC---hHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEeC
Q psy14494 29 EFIFKSIIELSINLQNYDSDLIIRYAI---ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKD 105 (470)
Q Consensus 29 ~Fl~esL~~L~~~L~~~G~~L~v~~g~---~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~~ 105 (470)
.|..+-+..+++.++++|..+.+...+ ....+.+++...+++.|+........ ...+.+.+.|+++..++.
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 23 STFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC------HHHHHHHHTTCCEEEESC
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHhCCCCEEEECC
Confidence 467777888889999999999887543 23345556666789988876432211 223445677999988865
Q ss_pred c
Q psy14494 106 Q 106 (470)
Q Consensus 106 ~ 106 (470)
.
T Consensus 97 ~ 97 (294)
T 3qk7_A 97 S 97 (294)
T ss_dssp C
T ss_pred C
Confidence 4
No 58
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=33.78 E-value=94 Score=30.44 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHh--------cCcCEEEEeccCChHHHHHHHHHHHHHHHcCcE
Q psy14494 30 FIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIK--------LNIDAVMINHDYEPQAIIRDKLIKKELKVIGCK 99 (470)
Q Consensus 30 Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~--------~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~ 99 (470)
-++.++.++=+.|++.|+++-|..+++.+.+...+++ .++..++.+....+ ..+.+.+++.|+.
T Consensus 256 ~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~~~~~~l~l~~~~~v~~~~KPKp------~~l~~al~~Lgl~ 327 (387)
T 3nvb_A 256 KAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWENKA------DNIRTIQRTLNIG 327 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHHCTTCSSCGGGCSEEEEESSCHH------HHHHHHHHHHTCC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhccccccCccCccEEEeCCCCcH------HHHHHHHHHhCcC
Confidence 4578889999999999999999999998888888876 45666665433222 3466666666764
No 59
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=33.63 E-value=1.2e+02 Score=28.62 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEec
Q psy14494 33 KSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINH 76 (470)
Q Consensus 33 esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~ 76 (470)
.++.++=+.|++.|+++.|..+.+...+..+++.+|+..++.+.
T Consensus 182 pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~~f~~~ 225 (317)
T 4eze_A 182 PGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNT 225 (317)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEC
T ss_pred cCHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCeEEEEE
Confidence 35667778889999999999999999999999999998877643
No 60
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=31.77 E-value=83 Score=26.94 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=38.9
Q ss_pred HHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCc
Q psy14494 40 INLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGC 98 (470)
Q Consensus 40 ~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v 98 (470)
+.|++.|+++.+..+.+...+..+++..++..++...-..+ ..+...++..|+
T Consensus 56 ~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~kpk~------~~~~~~~~~~~~ 108 (191)
T 3n1u_A 56 KLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQVDKR------SAYQHLKKTLGL 108 (191)
T ss_dssp HHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSCSSCH------HHHHHHHHHHTC
T ss_pred HHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeCCCChH------HHHHHHHHHhCC
Confidence 45677899999999999999999999999998776643333 234444544455
No 61
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=31.41 E-value=2.3e+02 Score=23.70 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=47.5
Q ss_pred HHHHHhcCCCcEEEEEcChHHHHHHHHHhc--CcCEEEEec-cCChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCc
Q psy14494 38 LSINLQNYDSDLIIRYAIASKEIKKLVIKL--NIDAVMINH-DYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNE 113 (470)
Q Consensus 38 L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~--~~~~V~~~~-~~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~ 113 (470)
+++.-.++|..+.++..+.+..|.+.+++. +++.|+.|. .|+.... ++.+++...++++.+++-..++..+.
T Consensus 41 l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv----AlrDAl~~~~~P~VEVHiSNi~aRE~ 115 (153)
T 3lwz_A 41 LEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSV----ALRDALLGVQIPFIEIHLSNVHAREP 115 (153)
T ss_dssp HHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHHHTCCEEEEESSCGGGSCG
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechH----HHHHHHHhcCCCEEEEEcCCccccch
Confidence 333344579999999888887766655553 477888885 3443433 34444555589999998776665544
No 62
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=31.29 E-value=1.7e+02 Score=26.06 Aligned_cols=64 Identities=9% Similarity=0.016 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEc------ChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEE
Q psy14494 33 KSIIELSINLQNYDSDLIIRYA------IASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFF 101 (470)
Q Consensus 33 esL~~L~~~L~~~G~~L~v~~g------~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~ 101 (470)
+.++++++.|++.|+.+..... +......+++++.|+..|+++.. .. .-+.+.+.+++.||.+-
T Consensus 63 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~--~~---~~~~l~~~a~~~gv~l~ 132 (262)
T 3p6l_A 63 QTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPA--LS---DWDLVEKLSKQYNIKIS 132 (262)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCC--GG---GHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCC--HH---HHHHHHHHHHHhCCEEE
Confidence 4688999999999999876632 23455667889999999999743 22 12467777788898764
No 63
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=30.93 E-value=1.2e+02 Score=25.14 Aligned_cols=75 Identities=5% Similarity=0.155 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCCcEEEEEcChHHHHHHHHHhc--CcCEEEEec-cCChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCC
Q psy14494 36 IELSINLQNYDSDLIIRYAIASKEIKKLVIKL--NIDAVMINH-DYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKN 112 (470)
Q Consensus 36 ~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~--~~~~V~~~~-~~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~ 112 (470)
+.+++.-+++|..|.++..+.+..|.+.+++. +.+.|+.|. .|+.... ++.++++..++++.+++-..++..+
T Consensus 34 ~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE 109 (146)
T 1h05_A 34 ALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHARE 109 (146)
T ss_dssp HHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHHTCCSCEEEEESSCGGGSC
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccH----HHHHHHHhCCCCEEEEEecCccccc
Confidence 33444445679999999888776665554442 367788885 3443332 4566677779999999877776655
Q ss_pred cc
Q psy14494 113 EI 114 (470)
Q Consensus 113 ~i 114 (470)
.+
T Consensus 110 ~F 111 (146)
T 1h05_A 110 EF 111 (146)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 64
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=30.92 E-value=1.5e+02 Score=25.24 Aligned_cols=73 Identities=5% Similarity=0.175 Sum_probs=48.0
Q ss_pred HHHHHhcCCCcEEEEEcChHHHHHHHHHhc--CcCEEEEec-cCChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCCcc
Q psy14494 38 LSINLQNYDSDLIIRYAIASKEIKKLVIKL--NIDAVMINH-DYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEI 114 (470)
Q Consensus 38 L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~--~~~~V~~~~-~~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~~i 114 (470)
+++.-.++|+.|.++..+.+..|.+.+.+. +++.|+.|. .|+-... ++.+++...++++.+++-..+...+.+
T Consensus 62 l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaRE~F 137 (172)
T 3n8k_A 62 IEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHAREEF 137 (172)
T ss_dssp HHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHTTCCSCEEEEESSCTTSSCGG
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhH----HHHHHHHhCCCCEEEEEcCCchhcccc
Confidence 333344689999999888777665555442 367788885 3433332 456667777899999987666655543
No 65
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=30.35 E-value=1.6e+02 Score=25.64 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCCcEEEEE--cChHHHHHHHHHhc--CcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEe
Q psy14494 33 KSIIELSINLQNYDSDLIIRY--AIASKEIKKLVIKL--NIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 33 esL~~L~~~L~~~G~~L~v~~--g~~~~~l~~L~~~~--~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~ 104 (470)
++++-|+..+++.|-+++|.. |....+|..++.+. .+..|+++....+.+ ..+.+++.|++.||+++.+.
T Consensus 31 ~~~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~~~e--~~~~v~~~~~~~gi~~~v~~ 104 (215)
T 1sur_A 31 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPE--TYRFIDELTDKLKLNLKVYR 104 (215)
T ss_dssp CHHHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCHH--HHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCCCHH--HHHHHHHHHHHhCCcEEEEe
Confidence 455667777777776776653 44445566666654 466778877665332 24567778888899998775
No 66
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=30.27 E-value=58 Score=27.75 Aligned_cols=55 Identities=11% Similarity=0.008 Sum_probs=38.7
Q ss_pred HHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCc
Q psy14494 38 LSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGC 98 (470)
Q Consensus 38 L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v 98 (470)
+=+.|++.|+++.+..|.+...+..+++..++..++......+ ..+...++..|+
T Consensus 61 ~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~kpk~------~~~~~~~~~~g~ 115 (188)
T 2r8e_A 61 GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKL------IAFSDLLEKLAI 115 (188)
T ss_dssp HHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCSCSH------HHHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeecCCCCCH------HHHHHHHHHcCC
Confidence 3445677899999999998888889999999998776543332 234444554454
No 67
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=30.14 E-value=1.3e+02 Score=26.93 Aligned_cols=64 Identities=5% Similarity=-0.076 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEEc---Ch---HHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEE
Q psy14494 33 KSIIELSINLQNYDSDLIIRYA---IA---SKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFF 101 (470)
Q Consensus 33 esL~~L~~~L~~~G~~L~v~~g---~~---~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~ 101 (470)
+.++++++.|++.|+.+..... .. .....+++++.|+..|.++.. . +.-+.+.+.+++.||.+-
T Consensus 61 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p~--~---~~l~~l~~~a~~~gv~l~ 130 (257)
T 3lmz_A 61 EQIRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVPN--Y---ELLPYVDKKVKEYDFHYA 130 (257)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEEC--G---GGHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecCC--H---HHHHHHHHHHHHcCCEEE
Confidence 4567777778888877665432 22 233445667778887777532 1 122345556666677653
No 68
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=30.00 E-value=2.1e+02 Score=25.86 Aligned_cols=71 Identities=8% Similarity=0.046 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEc--------C------------h---------HHHHHHHHHhcCcCEEEEeccCCh--
Q psy14494 32 FKSIIELSINLQNYDSDLIIRYA--------I------------A---------SKEIKKLVIKLNIDAVMINHDYEP-- 80 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~L~v~~g--------~------------~---------~~~l~~L~~~~~~~~V~~~~~~~~-- 80 (470)
-+.++++++.|++.|+.+..... + + .....+++++.|+..|+++-.+.+
T Consensus 50 ~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~ 129 (290)
T 3tva_A 50 REHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGFVPES 129 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCccc
Confidence 45689999999999999887632 1 1 123456678889999998643322
Q ss_pred ---HH---HHHHHHHHHHHHHcCcEEEE
Q psy14494 81 ---QA---IIRDKLIKKELKVIGCKFFS 102 (470)
Q Consensus 81 ---~~---~~rd~~v~~~l~~~~v~~~~ 102 (470)
.. .+.-+.+.+.+++.||.+-.
T Consensus 130 ~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 157 (290)
T 3tva_A 130 SSPDYSELVRVTQDLLTHAANHGQAVHL 157 (290)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 11 12234455566677887643
No 69
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=29.86 E-value=1.1e+02 Score=22.52 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=30.6
Q ss_pred HHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEeC
Q psy14494 63 LVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKD 105 (470)
Q Consensus 63 L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~~ 105 (470)
.++.-.+.-|+...|.+| ..-..+...|+..+|++..+.+
T Consensus 22 ai~~gkaklViiA~D~~~---~~~~~i~~lc~~~~Ip~~~v~s 61 (82)
T 3v7e_A 22 ALKRGSVKEVVVAKDADP---ILTSSVVSLAEDQGISVSMVES 61 (82)
T ss_dssp HHTTTCEEEEEEETTSCH---HHHHHHHHHHHHHTCCEEEESC
T ss_pred HHHcCCeeEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEECC
Confidence 345557888888888887 3556788888889999988753
No 70
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=29.21 E-value=1.2e+02 Score=23.77 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=26.0
Q ss_pred cEEEEEcChHHHHHHHHHhcCcCEEEEecc
Q psy14494 48 DLIIRYAIASKEIKKLVIKLNIDAVMINHD 77 (470)
Q Consensus 48 ~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~ 77 (470)
...+..|++.+.|.+.+++.+++-|++-..
T Consensus 79 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 108 (137)
T 2z08_A 79 DALLLEGVPAEAILQAARAEKADLIVMGTR 108 (137)
T ss_dssp GEEEEESSHHHHHHHHHHHTTCSEEEEESS
T ss_pred EEEEEecCHHHHHHHHHHHcCCCEEEECCC
Confidence 567779999999999999999999988754
No 71
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=29.16 E-value=62 Score=27.99 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCc----CEEEEeccC
Q psy14494 34 SIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNI----DAVMINHDY 78 (470)
Q Consensus 34 sL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~----~~V~~~~~~ 78 (470)
++.++-+.|++.|+++.+..+.+...+..+.+..++ +.|++..+.
T Consensus 107 ~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~i~~~~~~ 155 (231)
T 3kzx_A 107 GAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHYFDSIIGSGDT 155 (231)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEETSS
T ss_pred CHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCchhheeeEEccccc
Confidence 344555666677777777777666666666666653 456555543
No 72
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=28.23 E-value=1.5e+02 Score=27.64 Aligned_cols=42 Identities=19% Similarity=0.119 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEe
Q psy14494 34 SIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMIN 75 (470)
Q Consensus 34 sL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~ 75 (470)
++.++-+.|++.|+++.+..+.....+..+.+.+++..++.+
T Consensus 182 g~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~~~~~ 223 (335)
T 3n28_A 182 ELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSN 223 (335)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCeEEee
Confidence 455667788889999999999888888899999999877654
No 73
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=28.01 E-value=26 Score=19.70 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.1
Q ss_pred CchHHHHHHHHHHHhcC
Q psy14494 312 GYPLIDSAIIQLNSSGY 328 (470)
Q Consensus 312 G~p~vDA~mrqL~~tG~ 328 (470)
.-.||||.++|.+..|=
T Consensus 7 A~RIVdaVi~qvkasga 23 (26)
T 2drn_C 7 ASRIVDAVIEQVKAAGA 23 (26)
T ss_dssp HHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 34699999999998884
No 74
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=27.28 E-value=1.2e+02 Score=29.61 Aligned_cols=43 Identities=16% Similarity=0.015 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEe
Q psy14494 33 KSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMIN 75 (470)
Q Consensus 33 esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~ 75 (470)
.++.++=+.|++.|.++.+..+.+...+..+++.+|+..++.+
T Consensus 259 pg~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~ 301 (415)
T 3p96_A 259 PGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAAN 301 (415)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEE
T ss_pred ccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeee
Confidence 3566777888889999999999888888899999999887765
No 75
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=26.94 E-value=1.7e+02 Score=26.30 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcC----hHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEe
Q psy14494 29 EFIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 29 ~Fl~esL~~L~~~L~~~G~~L~v~~g~----~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~ 104 (470)
.|..+-+..+++.+++.|..+.+...+ ....+.+++...+++.|+........ ...+.+.+.|+++..++
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i~ 96 (288)
T 3gv0_A 23 GFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND------PRVRFMTERNMPFVTHG 96 (288)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC------HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc------HHHHHHhhCCCCEEEEC
Confidence 366778888899999999999887432 23445566666789988876322111 12334566799998876
Q ss_pred Cc
Q psy14494 105 DQ 106 (470)
Q Consensus 105 ~~ 106 (470)
..
T Consensus 97 ~~ 98 (288)
T 3gv0_A 97 RS 98 (288)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 76
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=25.57 E-value=56 Score=26.84 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=31.4
Q ss_pred HHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEec
Q psy14494 39 SINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINH 76 (470)
Q Consensus 39 ~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~ 76 (470)
=+.|++.|+++.+..|.+...+..+++.+++..++...
T Consensus 40 l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~ 77 (164)
T 3e8m_A 40 IFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGV 77 (164)
T ss_dssp HHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSC
T ss_pred HHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeeccc
Confidence 35566789999999999988888999999998877653
No 77
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=25.32 E-value=2.4e+02 Score=24.91 Aligned_cols=71 Identities=8% Similarity=0.044 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcC--hH--HHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEe
Q psy14494 29 EFIFKSIIELSINLQNYDSDLIIRYAI--AS--KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 29 ~Fl~esL~~L~~~L~~~G~~L~v~~g~--~~--~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~ 104 (470)
.|..+-+..+++.++++|..+.+...+ .. ..+.+.+...+++.|+... .. +..++..+.+.|+++..++
T Consensus 21 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~-~~------~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 21 PFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA-FN------ENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG-GG------HHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec-CC------hHHHHHHHHcCCCCEEEEe
Confidence 366777788888999999999887543 22 1233334456899988864 11 1223315667799998876
Q ss_pred Cc
Q psy14494 105 DQ 106 (470)
Q Consensus 105 ~~ 106 (470)
..
T Consensus 94 ~~ 95 (277)
T 3e61_A 94 RI 95 (277)
T ss_dssp GC
T ss_pred cc
Confidence 44
No 78
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=25.22 E-value=15 Score=29.42 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.2
Q ss_pred hhhhcCCcchhHHhhcccccc
Q psy14494 394 QSKKFDYQGIFIRKYLPQLSK 414 (470)
Q Consensus 394 q~~k~Dp~g~yIr~w~PeL~~ 414 (470)
...||||+|.|.+++.-+++.
T Consensus 84 L~~KyDP~g~y~~~y~~~~~~ 104 (112)
T 1k19_A 84 LTAKYDPTGNWRKKYEDRAKA 104 (112)
T ss_dssp HHHSSTTTCSSHHHHHHHHHH
T ss_pred HHHHHCCCchHHHHHHHHHHH
Confidence 356999999999999877654
No 79
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=25.17 E-value=1e+02 Score=25.12 Aligned_cols=40 Identities=8% Similarity=-0.069 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcC
Q psy14494 31 IFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNID 70 (470)
Q Consensus 31 l~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~ 70 (470)
.+..|.++.+++++.|..++.+..+..+.+.++++++++.
T Consensus 54 ~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~ 93 (163)
T 3gkn_A 54 EGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFA 93 (163)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 3678899999999999998888888888888899888776
No 80
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=25.04 E-value=66 Score=26.78 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcChH
Q psy14494 32 FKSIIELSINLQNYDSDLIIRYAIAS 57 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~L~v~~g~~~ 57 (470)
..++.++=+.|++.|+++.+..+.+.
T Consensus 29 ~~g~~~~l~~L~~~g~~~~i~Tn~~~ 54 (179)
T 3l8h_A 29 LPGSLQAIARLTQADWTVVLATNQSG 54 (179)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECTT
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCc
Confidence 45566666777888999999877653
No 81
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=24.58 E-value=2.4e+02 Score=25.96 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhc----C-CCcEEEEEcChHHHHHHHHHhcCcCEEEEec---cCChHHHHHHHHHHHHHHHcCcEEEE
Q psy14494 31 IFKSIIELSINLQN----Y-DSDLIIRYAIASKEIKKLVIKLNIDAVMINH---DYEPQAIIRDKLIKKELKVIGCKFFS 102 (470)
Q Consensus 31 l~esL~~L~~~L~~----~-G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~---~~~~~~~~rd~~v~~~l~~~~v~~~~ 102 (470)
+.+.|.+|.+++++ . +..+++.+ +.+..|++.+|.+.+-... +-+|. -++-..+.+.+++.+|++..
T Consensus 159 ~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps-~~~l~~l~~~ik~~~v~~if 233 (286)
T 3gi1_A 159 FKKEAEQLTEEYTQKFKKVRSKTFVTQH----TAFSYLAKRFGLKQLGISGISPEQEPS-PRQLKEIQDFVKEYNVKTIF 233 (286)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCEEEEEE----SCCHHHHHHTTCEEEEEECSCC---CC-HHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEC----CchHHHHHHCCCeEeeccccCCCCCCC-HHHHHHHHHHHHHcCCCEEE
Confidence 45556666666553 2 45555544 4678888999998665432 11222 34456677778888998877
Q ss_pred Ee
Q psy14494 103 YK 104 (470)
Q Consensus 103 ~~ 104 (470)
++
T Consensus 234 ~e 235 (286)
T 3gi1_A 234 AE 235 (286)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 82
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=24.15 E-value=2.3e+02 Score=25.93 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEc--ChH---HHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEe
Q psy14494 30 FIFKSIIELSINLQNYDSDLIIRYA--IAS---KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 30 Fl~esL~~L~~~L~~~G~~L~v~~g--~~~---~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~ 104 (470)
|..+-+..+++.++++|..+.+... ++. +.+..+.. .+++.|+....-.. ..+. +.+.+.+.||++..++
T Consensus 17 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiIi~~~~~~---~~~~-~~~~~~~~giPvV~~~ 91 (330)
T 3uug_A 17 RWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT-KGVKVLVIASIDGT---TLSD-VLKQAGEQGIKVIAYD 91 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-HTCSEEEECCSSGG---GGHH-HHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH-cCCCEEEEEcCCch---hHHH-HHHHHHHCCCCEEEEC
Confidence 6667777888889999999988754 333 34555554 47998887632211 1112 2334566799999886
Q ss_pred Cc
Q psy14494 105 DQ 106 (470)
Q Consensus 105 ~~ 106 (470)
..
T Consensus 92 ~~ 93 (330)
T 3uug_A 92 RL 93 (330)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 83
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=23.96 E-value=2.8e+02 Score=22.60 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcChH------------------------HHHHHHHHhcCcCEEEEeccCChHHHHHHHH
Q psy14494 33 KSIIELSINLQNYDSDLIIRYAIAS------------------------KEIKKLVIKLNIDAVMINHDYEPQAIIRDKL 88 (470)
Q Consensus 33 esL~~L~~~L~~~G~~L~v~~g~~~------------------------~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~ 88 (470)
+.+.++.+.|.++|..|+-..|... ..+.+++++..++-|+...+.......-+..
T Consensus 37 ~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~ 116 (143)
T 2yvq_A 37 PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKFVHDNYV 116 (143)
T ss_dssp HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCcCCccHHH
Confidence 4566677777777777665433210 1244445555555555544332222333345
Q ss_pred HHHHHHHcCcEEE
Q psy14494 89 IKKELKVIGCKFF 101 (470)
Q Consensus 89 v~~~l~~~~v~~~ 101 (470)
+++.+-+.+|++.
T Consensus 117 iRR~Av~~~IP~~ 129 (143)
T 2yvq_A 117 IRRTAVDSGIPLL 129 (143)
T ss_dssp HHHHHHHTTCCEE
T ss_pred HHHHHHHhCCCeE
Confidence 5555555666553
No 84
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=23.61 E-value=1.6e+02 Score=28.08 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=46.6
Q ss_pred EEEEecCCCCCccccCCCCcHHH-HHHHHHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccC
Q psy14494 5 CVFIFDKNILDPLRSQGIIEDRR-IEFIFKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDY 78 (470)
Q Consensus 5 ~vfi~dp~~~~~~~~~~~~~~~r-~~Fl~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~ 78 (470)
.|+++|+ |.. -. ++.. ..|.+..++.+-+.+++.|.+++.+.+.....|..++ +.+++.+.++...
T Consensus 209 ~i~i~D~--~~~-~l----sp~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~G~~~~l~~l~-~~g~d~~~~d~~~ 275 (359)
T 2inf_A 209 AIQIFDS--WVG-AL----NQADYRTYIKPVMNRIFSELAKENVPLIMFGVGASHLAGDWH-DLPLDVVGLDWRL 275 (359)
T ss_dssp EEEEECT--TGG-GS----CHHHHHHHTHHHHHHHHHHHGGGCSCEEEECTTCGGGHHHHH-TSSCSEEECCTTS
T ss_pred EEEEeCC--ccc-cC----CHHHHHHHhHHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHH-HhCCCEEEeCCCC
Confidence 4778887 432 23 6644 4599999999999999889887776443356777665 5899988775443
No 85
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=23.58 E-value=65 Score=27.19 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=30.1
Q ss_pred HHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEE
Q psy14494 38 LSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMI 74 (470)
Q Consensus 38 L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~ 74 (470)
+=+.|++.|+++.+..|.+...+..+++..++..++.
T Consensus 43 ~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~ 79 (180)
T 1k1e_A 43 GIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFL 79 (180)
T ss_dssp HHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeec
Confidence 3344566899999999999888889999999987664
No 86
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=23.55 E-value=3.2e+02 Score=22.73 Aligned_cols=74 Identities=7% Similarity=0.032 Sum_probs=51.0
Q ss_pred HHHHHHhcCCCcEEEEEcChHHHHHHHHHhc--C-cCEEEEec-cCChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcCC
Q psy14494 37 ELSINLQNYDSDLIIRYAIASKEIKKLVIKL--N-IDAVMINH-DYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKN 112 (470)
Q Consensus 37 ~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~--~-~~~V~~~~-~~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p~ 112 (470)
.+++.-+++|..|.++..+.+..|.+.+++. . .+.|+.|. .|+.... ++.++++..++++.+++-..++.++
T Consensus 32 ~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE 107 (149)
T 2uyg_A 32 LCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSY----ALLDAIRAQPLPVVEVHLTNLHARE 107 (149)
T ss_dssp HHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSC
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCccccc
Confidence 3444445679999999998887776666554 2 67899885 3433332 4566677779999999877776655
Q ss_pred cc
Q psy14494 113 EI 114 (470)
Q Consensus 113 ~i 114 (470)
.+
T Consensus 108 ~F 109 (149)
T 2uyg_A 108 EF 109 (149)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 87
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=23.49 E-value=1.7e+02 Score=26.34 Aligned_cols=72 Identities=11% Similarity=0.034 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEc-ChH---HHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEeC
Q psy14494 30 FIFKSIIELSINLQNYDSDLIIRYA-IAS---KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKD 105 (470)
Q Consensus 30 Fl~esL~~L~~~L~~~G~~L~v~~g-~~~---~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~~ 105 (470)
|..+-+..+++.++++|..+.+... ++. +.+..+.. .+++.|+....-.. . ...+-+.+.+.||++..++.
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~---~-~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 16 WFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAA-SGAKGFVICTPDPK---L-GSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHH-TTCCEEEEECSCGG---G-HHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCch---h-hHHHHHHHHHCCCcEEEeCC
Confidence 6667777788888888999887754 333 23555544 47898887642111 1 12223345667999998874
Q ss_pred c
Q psy14494 106 Q 106 (470)
Q Consensus 106 ~ 106 (470)
.
T Consensus 91 ~ 91 (306)
T 8abp_A 91 Q 91 (306)
T ss_dssp C
T ss_pred C
Confidence 3
No 88
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.05 E-value=1.6e+02 Score=26.41 Aligned_cols=72 Identities=4% Similarity=0.020 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEc--ChHH--HHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEe
Q psy14494 29 EFIFKSIIELSINLQNYDSDLIIRYA--IASK--EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 29 ~Fl~esL~~L~~~L~~~G~~L~v~~g--~~~~--~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~ 104 (470)
.|..+-+..+++.++++|..+.+... ++.. .+.+.+...+++.|++..... ...+.+.+.+.||++..++
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 21 VFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG------EHDYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS------CCHHHHHSSCTTSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC------ChHHHHHhhccCCCEEEEe
Confidence 36667778888899999999998864 2222 223334456899888764322 1123344566799998876
Q ss_pred Cc
Q psy14494 105 DQ 106 (470)
Q Consensus 105 ~~ 106 (470)
..
T Consensus 95 ~~ 96 (291)
T 3egc_A 95 RE 96 (291)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 89
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=22.60 E-value=2.4e+02 Score=25.17 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCh-H---HHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEeC
Q psy14494 30 FIFKSIIELSINLQNYDSDLIIRYAIA-S---KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKD 105 (470)
Q Consensus 30 Fl~esL~~L~~~L~~~G~~L~v~~g~~-~---~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~~ 105 (470)
|..+-+..+++.++++|..+.+...+. . ..+.+.+...+++.|+........ .+.+.+.+.|+++..++.
T Consensus 27 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 27 FFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND------RIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHHCCCCEEEECC
Confidence 667778888899999999998875432 2 233444555689988875322111 234445667999988764
Q ss_pred c
Q psy14494 106 Q 106 (470)
Q Consensus 106 ~ 106 (470)
.
T Consensus 101 ~ 101 (292)
T 3k4h_A 101 P 101 (292)
T ss_dssp C
T ss_pred C
Confidence 3
No 90
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=22.46 E-value=3.4e+02 Score=24.23 Aligned_cols=70 Identities=6% Similarity=-0.010 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcC--------------hHHHHHHHHHhcCcCEEEEeccCChH------H----HHHHHH
Q psy14494 33 KSIIELSINLQNYDSDLIIRYAI--------------ASKEIKKLVIKLNIDAVMINHDYEPQ------A----IIRDKL 88 (470)
Q Consensus 33 esL~~L~~~L~~~G~~L~v~~g~--------------~~~~l~~L~~~~~~~~V~~~~~~~~~------~----~~rd~~ 88 (470)
+.+.++++.|++.|+.+...... ......+++++.|+..|.++-...+. . .+.-+.
T Consensus 48 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~ 127 (286)
T 3dx5_A 48 ETTERELNCLKDKTLEITMISDYLDISLSADFEKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRM 127 (286)
T ss_dssp HHHHHHHHHTGGGTCCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHH
Confidence 68899999999999998876321 11234567788899999876433211 1 122244
Q ss_pred HHHHHHHcCcEEEE
Q psy14494 89 IKKELKVIGCKFFS 102 (470)
Q Consensus 89 v~~~l~~~~v~~~~ 102 (470)
+.+.+++.||.+-.
T Consensus 128 l~~~a~~~Gv~l~l 141 (286)
T 3dx5_A 128 ICELFAQHNMYVLL 141 (286)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHhCCEEEE
Confidence 55566778887643
No 91
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=22.31 E-value=2.3e+02 Score=24.31 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=49.4
Q ss_pred HHHHHh--cCCCcEEEEEcChHHHHHHHHHhc--C-cCEEEEec-cCChHHHHHHHHHHHHHHHcCcEEEEEeCceeEcC
Q psy14494 38 LSINLQ--NYDSDLIIRYAIASKEIKKLVIKL--N-IDAVMINH-DYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEK 111 (470)
Q Consensus 38 L~~~L~--~~G~~L~v~~g~~~~~l~~L~~~~--~-~~~V~~~~-~~~~~~~~rd~~v~~~l~~~~v~~~~~~~~~L~~p 111 (470)
|++.-. ++|+.|.++..+.+..|.+.+.+. . .+.|+.|. .|+.... ++.+++...++++.+++-..++..
T Consensus 43 l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAyTHtSv----AlrDAl~~v~~P~VEVHiSNi~aR 118 (176)
T 2c4w_A 43 MQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAFSHTSI----AIADAIMLAGKPVIEVHLTNIQAR 118 (176)
T ss_dssp HHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGGGGTCH----HHHHHHHTSSSCEEEEESSCGGGS
T ss_pred HHHHhccccCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCcccc
Confidence 334445 678899999888877665555443 2 77899985 3443332 456667777999999987777766
Q ss_pred Ccc
Q psy14494 112 NEI 114 (470)
Q Consensus 112 ~~i 114 (470)
+.+
T Consensus 119 E~F 121 (176)
T 2c4w_A 119 EEF 121 (176)
T ss_dssp CGG
T ss_pred ccc
Confidence 554
No 92
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=22.20 E-value=1.1e+02 Score=26.65 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCc----CEEEEeccCChHHHHHHHHHHHHHHHcCcE
Q psy14494 34 SIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNI----DAVMINHDYEPQAIIRDKLIKKELKVIGCK 99 (470)
Q Consensus 34 sL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~----~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~ 99 (470)
++.++=+.|++.|+++.+..+.+...+..+.+..++ +.|++..+... .+.--..+...++..|+.
T Consensus 114 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~~g~~ 182 (240)
T 3sd7_A 114 NMKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLDGT-RVNKNEVIQYVLDLCNVK 182 (240)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTSC-CCCHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcHhhEEEEEeccccCC-CCCCHHHHHHHHHHcCCC
Confidence 445666778888999999888777777777777764 56666655431 111122344555555664
No 93
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=22.12 E-value=77 Score=27.79 Aligned_cols=68 Identities=7% Similarity=0.073 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEE---cChHHHHHHHHHhcCcCEEEEeccCC---hHHHHHHHHHHHHHHHcCcEEEE
Q psy14494 33 KSIIELSINLQNYDSDLIIRY---AIASKEIKKLVIKLNIDAVMINHDYE---PQAIIRDKLIKKELKVIGCKFFS 102 (470)
Q Consensus 33 esL~~L~~~L~~~G~~L~v~~---g~~~~~l~~L~~~~~~~~V~~~~~~~---~~~~~rd~~v~~~l~~~~v~~~~ 102 (470)
+.|+-..++.+++||+-+|+. |+....+.+.+ .+++-|++...++ |.....+..+++.|++.|+++..
T Consensus 30 ~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 455555666677798876663 45554444433 3556565555443 55567778899999999998765
No 94
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=21.78 E-value=4.2e+02 Score=24.22 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcC--hHH---HHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEe
Q psy14494 30 FIFKSIIELSINLQNYDSDLIIRYAI--ASK---EIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 30 Fl~esL~~L~~~L~~~G~~L~v~~g~--~~~---~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~ 104 (470)
|..+-+..+.+.++++|..+.+...+ +.. .+..+ ...+++.|+....... +..+.+.+++.++++..++
T Consensus 77 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~iPvV~~~ 150 (338)
T 3dbi_A 77 YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYL-LDLRCDAIMIYPRFLS-----VDEIDDIIDAHSQPIMVLN 150 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHH-HHTTCSEEEECCSSSC-----HHHHHHHHHHCSSCEEEES
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHH-HhCCCCEEEEeCCCCC-----hHHHHHHHHcCCCCEEEEc
Confidence 66777888888999999999888642 322 33333 4458998887643222 1335566677789988776
Q ss_pred C
Q psy14494 105 D 105 (470)
Q Consensus 105 ~ 105 (470)
.
T Consensus 151 ~ 151 (338)
T 3dbi_A 151 R 151 (338)
T ss_dssp S
T ss_pred C
Confidence 4
No 95
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=21.77 E-value=68 Score=31.32 Aligned_cols=41 Identities=15% Similarity=-0.104 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEe
Q psy14494 35 IIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMIN 75 (470)
Q Consensus 35 L~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~ 75 (470)
+..+++-|+.+|++.++..|++.+++..|++...+..|++.
T Consensus 137 ~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS~ 177 (379)
T 1ul1_X 137 NDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATE 177 (379)
T ss_dssp HHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECS
T ss_pred HHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEec
Confidence 46677788888999999989999999999888666555553
No 96
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=21.55 E-value=3.1e+02 Score=25.14 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhc-----CCCcEEEEEcChHHHHHHHHHhcCcCEEEEec---cCChHHHHHHHHHHHHHHHcCcEEEE
Q psy14494 31 IFKSIIELSINLQN-----YDSDLIIRYAIASKEIKKLVIKLNIDAVMINH---DYEPQAIIRDKLIKKELKVIGCKFFS 102 (470)
Q Consensus 31 l~esL~~L~~~L~~-----~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~---~~~~~~~~rd~~v~~~l~~~~v~~~~ 102 (470)
+.+-|.+|.+++++ .+..+++.+ +.+..|++.+|.+.+.... +-+|. -++-..+.+.+++.+|++..
T Consensus 157 ~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps-~~~l~~l~~~ik~~~v~~if 231 (284)
T 3cx3_A 157 FIKKAQELTKKFQPKFEKATQKTFVTQH----TAFSYLAKRFGLNQLGIAGISPEQEPS-PRQLTEIQEFVKTYKVKTIF 231 (284)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCEEEEE----SCCHHHHHHTTCCEEEEECSSTTCCCC-SHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEC----CchHHHHHHcCCEEeeccCCCCCCCCC-HHHHHHHHHHHHHcCCCEEE
Confidence 34556666665443 245566654 4578899999999776542 12222 24445677778888998776
Q ss_pred Ee
Q psy14494 103 YK 104 (470)
Q Consensus 103 ~~ 104 (470)
++
T Consensus 232 ~e 233 (284)
T 3cx3_A 232 TE 233 (284)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 97
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=21.52 E-value=2.9e+02 Score=24.78 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcC-hH---HHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEe
Q psy14494 29 EFIFKSIIELSINLQNYDSDLIIRYAI-AS---KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYK 104 (470)
Q Consensus 29 ~Fl~esL~~L~~~L~~~G~~L~v~~g~-~~---~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~ 104 (470)
.|..+-+..+++.++++|..+.+...+ .. ..+.+.+...+++.|+....... ..+.+.+.+.|+++..++
T Consensus 25 ~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~------~~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 25 PFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN------DPIKQMLIDESMPFIVIG 98 (295)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT------CHHHHHHHHTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC------hHHHHHHHhCCCCEEEEC
Confidence 477788888999999999999887543 21 23444455568998887632211 123344567799998876
Q ss_pred C
Q psy14494 105 D 105 (470)
Q Consensus 105 ~ 105 (470)
.
T Consensus 99 ~ 99 (295)
T 3hcw_A 99 K 99 (295)
T ss_dssp C
T ss_pred C
Confidence 4
No 98
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.38 E-value=1.7e+02 Score=26.16 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcC--hH---HHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEE
Q psy14494 29 EFIFKSIIELSINLQNYDSDLIIRYAI--AS---KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSY 103 (470)
Q Consensus 29 ~Fl~esL~~L~~~L~~~G~~L~v~~g~--~~---~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~ 103 (470)
.|..+-+..+++.++++|..+.+...+ +. +.+..+. ..+++.|+........ . ..+.+.+.+.||++..+
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~---~-~~~~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 21 EFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFV-HLKVDAIFITTLDDVY---I-GSAIEEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHH-HTTCSEEEEECSCTTT---T-HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEecCChHH---H-HHHHHHHHHcCCCEEEe
Confidence 366677788888899999999987543 32 3444444 3588988876322211 1 12233455679999888
Q ss_pred eCc
Q psy14494 104 KDQ 106 (470)
Q Consensus 104 ~~~ 106 (470)
+..
T Consensus 96 ~~~ 98 (293)
T 3l6u_A 96 DRM 98 (293)
T ss_dssp SSC
T ss_pred cCC
Confidence 643
No 99
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=21.21 E-value=76 Score=30.15 Aligned_cols=42 Identities=10% Similarity=-0.047 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEe
Q psy14494 34 SIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMIN 75 (470)
Q Consensus 34 sL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~ 75 (470)
.+..+++-|+.+|++.++..|++.+++..|++.--+..|++.
T Consensus 131 ~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~g~~~~I~S~ 172 (326)
T 1a76_A 131 MVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQ 172 (326)
T ss_dssp HHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECS
T ss_pred HHHHHHHHHHHcCCCeEECCccHHHHHHHHHHCCCEEEEecC
Confidence 456677778888999999999999999999987444555443
No 100
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=21.20 E-value=51 Score=31.48 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHh----cCc--CEEEEe
Q psy14494 32 FKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIK----LNI--DAVMIN 75 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~----~~~--~~V~~~ 75 (470)
+..+.+|=+.|++.|+.++|..+.+.+++.-++.. +|| ++|+-.
T Consensus 145 ~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a~~~~~~ygIp~e~ViG~ 194 (327)
T 4as2_A 145 FSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGV 194 (327)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHTCGGGSCCCCGGGEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhhcccccCCCHHHeEee
Confidence 45678888888888999999988888888888876 455 355543
No 101
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=21.04 E-value=93 Score=28.67 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=7.3
Q ss_pred HHHhcCcCEEEEecc
Q psy14494 63 LVIKLNIDAVMINHD 77 (470)
Q Consensus 63 L~~~~~~~~V~~~~~ 77 (470)
.+++.|+..++..-+
T Consensus 152 ~l~~~gi~v~ivSgg 166 (297)
T 4fe3_A 152 KLQQHGIPVFIFSAG 166 (297)
T ss_dssp HHHHTTCCEEEEEEE
T ss_pred HHHHcCCeEEEEeCC
Confidence 344455555555443
No 102
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=20.81 E-value=1.8e+02 Score=25.45 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCChHHHHHHHHh
Q psy14494 314 PLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANK 359 (470)
Q Consensus 314 p~vDA~mrqL~~tG~mhnr~Rm~~asfl~k~L~idW~~g~~~F~~~ 359 (470)
||+-+.+..|+...-+.+-.|+..++||.. ++++=.+.-.+|...
T Consensus 20 pCM~~l~~~Lr~~~hL~h~gR~ql~lFLkg-iGls~ee~l~f~r~~ 64 (194)
T 3lgb_A 20 LCIKNLMEGLKKNHHLRYYGRQQLSLFLKG-IGLSADEALKFWSEA 64 (194)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 678888888999999999999999999964 777766665655543
No 103
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=20.56 E-value=2.5e+02 Score=25.42 Aligned_cols=74 Identities=8% Similarity=0.095 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCh-H---HHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEE
Q psy14494 28 IEFIFKSIIELSINLQNYDSDLIIRYAIA-S---KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSY 103 (470)
Q Consensus 28 ~~Fl~esL~~L~~~L~~~G~~L~v~~g~~-~---~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~ 103 (470)
-.|..+-+..+++.++++|..+.+...+. . ..+.+.+...+++.|+........ ...+.+.+.|+++..+
T Consensus 39 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i 112 (305)
T 3huu_A 39 NPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD------PIEHLLNEFKVPYLIV 112 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC------HHHHHHHHTTCCEEEE
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc------HHHHHHHHcCCCEEEE
Confidence 34777788888899999999998875432 1 234444555689988875322111 2334456779999988
Q ss_pred eCce
Q psy14494 104 KDQV 107 (470)
Q Consensus 104 ~~~~ 107 (470)
+...
T Consensus 113 ~~~~ 116 (305)
T 3huu_A 113 GKSL 116 (305)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 104
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=20.54 E-value=1.3e+02 Score=25.87 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=13.1
Q ss_pred HHHhcCCCcEEEEEcChHHHHHHHHHhcC
Q psy14494 40 INLQNYDSDLIIRYAIASKEIKKLVIKLN 68 (470)
Q Consensus 40 ~~L~~~G~~L~v~~g~~~~~l~~L~~~~~ 68 (470)
+.|++.|+++.+..+.+...+..+++..+
T Consensus 93 ~~l~~~g~~~~i~s~~~~~~~~~~l~~~g 121 (222)
T 2nyv_A 93 EALKSKGFKLAVVSNKLEELSKKILDILN 121 (222)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTT
T ss_pred HHHHHCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 33444455555544444444444444443
No 105
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=20.53 E-value=1.2e+02 Score=25.55 Aligned_cols=39 Identities=8% Similarity=-0.055 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCcC
Q psy14494 32 FKSIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNID 70 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~ 70 (470)
+..|.++.+++++.|..++.+..++.+.+.++++++++.
T Consensus 71 l~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~ 109 (179)
T 3ixr_A 71 GLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFT 109 (179)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCc
Confidence 567888888888888888877777777888888887765
No 106
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=20.52 E-value=3.7e+02 Score=23.62 Aligned_cols=68 Identities=7% Similarity=0.038 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEEc--C----------hHHHHHHHHHhcCcCEEEEeccCC-----hHH-HHHHHHHHHHHH
Q psy14494 33 KSIIELSINLQNYDSDLIIRYA--I----------ASKEIKKLVIKLNIDAVMINHDYE-----PQA-IIRDKLIKKELK 94 (470)
Q Consensus 33 esL~~L~~~L~~~G~~L~v~~g--~----------~~~~l~~L~~~~~~~~V~~~~~~~-----~~~-~~rd~~v~~~l~ 94 (470)
+.+.++++.|++.|+.+..+.. . ......+++++.|+..|.++-... ... .+.-+.+.+.++
T Consensus 51 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~ 130 (272)
T 2q02_A 51 LNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFA 130 (272)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 3466777778888887754432 0 112344566777888777653221 111 233345555566
Q ss_pred HcCcEE
Q psy14494 95 VIGCKF 100 (470)
Q Consensus 95 ~~~v~~ 100 (470)
+.||.+
T Consensus 131 ~~gv~l 136 (272)
T 2q02_A 131 RYDIQG 136 (272)
T ss_dssp TTTCEE
T ss_pred HcCCEE
Confidence 667764
No 107
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=20.51 E-value=1.5e+02 Score=26.17 Aligned_cols=73 Identities=5% Similarity=0.007 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEE----cChH---HHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEE
Q psy14494 30 FIFKSIIELSINLQNYDSDLIIRY----AIAS---KEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFS 102 (470)
Q Consensus 30 Fl~esL~~L~~~L~~~G~~L~v~~----g~~~---~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~ 102 (470)
|..+-+..+++.++++|..+.+.. +++. +.+..+.+.-+++.|+....-... .....+.+.+.|+++..
T Consensus 14 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~----~~~~~~~~~~~~ipvV~ 89 (276)
T 3ksm_A 14 YWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED----LTPSVAQYRARNIPVLV 89 (276)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT----THHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH----HHHHHHHHHHCCCcEEE
Confidence 556667778888888999998875 2333 345666655339988886421111 11223345667999988
Q ss_pred EeCc
Q psy14494 103 YKDQ 106 (470)
Q Consensus 103 ~~~~ 106 (470)
++..
T Consensus 90 ~~~~ 93 (276)
T 3ksm_A 90 VDSD 93 (276)
T ss_dssp ESSC
T ss_pred EecC
Confidence 8643
No 108
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=20.47 E-value=89 Score=29.11 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-----CCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcE
Q psy14494 25 DRRIEFIFKSIIELSINLQNY-----DSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCK 99 (470)
Q Consensus 25 ~~r~~Fl~esL~~L~~~L~~~-----G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~ 99 (470)
..+..=+.+-|..|.+++++. +..+++.+ +.+..|++.+|.+.+.....-....-++-+.+.+.+++.+|+
T Consensus 164 ~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~ 239 (291)
T 1pq4_A 164 EANLAAFLAELERLNQELGQILQPLPQRKFIVFH----PSWAYFARDYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLT 239 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESS----CCCHHHHHHTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEC----CchHHHHHHCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCC
Q ss_pred EEEEeCce
Q psy14494 100 FFSYKDQV 107 (470)
Q Consensus 100 ~~~~~~~~ 107 (470)
+..++...
T Consensus 240 ~If~e~~~ 247 (291)
T 1pq4_A 240 MVFGETQF 247 (291)
T ss_dssp EEEEETTS
T ss_pred EEEEeCCC
No 109
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=20.40 E-value=1.2e+02 Score=32.34 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=34.1
Q ss_pred HHHhcCCCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCChHHH
Q psy14494 40 INLQNYDSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYEPQAI 83 (470)
Q Consensus 40 ~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~ 83 (470)
++|++.|+.+.+..|+.......++++.|++.|++. ..|..+
T Consensus 564 ~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~--~~P~~K 605 (736)
T 3rfu_A 564 LELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAE--IMPEDK 605 (736)
T ss_dssp HHHHHHTCEEEEECSSCHHHHHHHHHHHTCCCEECS--CCHHHH
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEe--cCHHHH
Confidence 345567999999999999999999999999988775 456543
No 110
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=20.26 E-value=2e+02 Score=23.53 Aligned_cols=38 Identities=11% Similarity=-0.008 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCCc-EEEEEcChHHHHHHHHHhcCc
Q psy14494 32 FKSIIELSINLQNYDSD-LIIRYAIASKEIKKLVIKLNI 69 (470)
Q Consensus 32 ~esL~~L~~~L~~~G~~-L~v~~g~~~~~l~~L~~~~~~ 69 (470)
+..|.++.+++++.|+. ++.+.-+..+.+.++++++++
T Consensus 56 ~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~ 94 (162)
T 1tp9_A 56 VPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPE 94 (162)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCC
Confidence 45688888888888998 888877777888899998888
No 111
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=20.22 E-value=1.1e+02 Score=26.08 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCcEEEEEcChHHHHHHHHHhcCc----CEEEEeccCChHHHHHHHHHHHHHHHcCcE
Q psy14494 34 SIIELSINLQNYDSDLIIRYAIASKEIKKLVIKLNI----DAVMINHDYEPQAIIRDKLIKKELKVIGCK 99 (470)
Q Consensus 34 sL~~L~~~L~~~G~~L~v~~g~~~~~l~~L~~~~~~----~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~ 99 (470)
++.++-+.|++.|+++.+..+.....+..+.+..++ +.|++..++.. ...--..+...++..|+.
T Consensus 90 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~lgi~ 158 (226)
T 3mc1_A 90 GIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFYFDAIVGSSLDGK-LSTKEDVIRYAMESLNIK 158 (226)
T ss_dssp THHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTSS-SCSHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCHhheeeeeccCCCCC-CCCCHHHHHHHHHHhCcC
Confidence 445555666777888888877776766666766654 45665554421 111123344445555653
No 112
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=20.19 E-value=1.5e+02 Score=25.13 Aligned_cols=42 Identities=5% Similarity=0.106 Sum_probs=34.8
Q ss_pred EcChHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHH
Q psy14494 53 YAIASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELK 94 (470)
Q Consensus 53 ~g~~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~ 94 (470)
.|+..+.|+..+..+|+.+.+.|.|.+...++.|.....++.
T Consensus 89 lGdi~~tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~ls 130 (174)
T 3iht_A 89 LGDIRETLPATLERFGATASLVHADLGGHNREKNDRFARLIS 130 (174)
T ss_dssp ESCHHHHHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhh
Confidence 478888898888888999999999988887788877777774
No 113
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=20.02 E-value=3.6e+02 Score=24.07 Aligned_cols=69 Identities=7% Similarity=0.037 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcC----hHHHHHHHHHhcCcCEEEEeccCChHHHHHHHHHHHHHHHcCcEEEEEeC
Q psy14494 30 FIFKSIIELSINLQNYDSDLIIRYAI----ASKEIKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKD 105 (470)
Q Consensus 30 Fl~esL~~L~~~L~~~G~~L~v~~g~----~~~~l~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~v~~~~~~~ 105 (470)
|..+-+..+.+.++++|..+.+...+ ..+.+..+ ...+++.|+........ ..+ +.+.+ |+++..++.
T Consensus 25 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~-----~~~-~~~~~-~iPvV~i~~ 96 (289)
T 3k9c_A 25 FHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQAL-MRERCEAAILLGTRFDT-----DEL-GALAD-RVPALVVAR 96 (289)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHH-TTTTEEEEEEETCCCCH-----HHH-HHHHT-TSCEEEESS
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH-HhCCCCEEEEECCCCCH-----HHH-HHHHc-CCCEEEEcC
Confidence 66777888889999999999887532 23445555 34578888876432221 223 33445 999988764
Q ss_pred c
Q psy14494 106 Q 106 (470)
Q Consensus 106 ~ 106 (470)
.
T Consensus 97 ~ 97 (289)
T 3k9c_A 97 A 97 (289)
T ss_dssp C
T ss_pred C
Confidence 3
No 114
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=20.00 E-value=3.1e+02 Score=25.72 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=47.1
Q ss_pred EEEEecCCCCCccccCCCCcHHH-HHHHHHHHHHHHHHHhcC-CCcEEEEEcChHHHHHHHHHhcCcCEEEEeccCC
Q psy14494 5 CVFIFDKNILDPLRSQGIIEDRR-IEFIFKSIIELSINLQNY-DSDLIIRYAIASKEIKKLVIKLNIDAVMINHDYE 79 (470)
Q Consensus 5 ~vfi~dp~~~~~~~~~~~~~~~r-~~Fl~esL~~L~~~L~~~-G~~L~v~~g~~~~~l~~L~~~~~~~~V~~~~~~~ 79 (470)
.|+++|+. .. -. ++.. ..|.+..++.+-+.+++. |.+++.+.+.....|..+ .+.|++.+-.+....
T Consensus 195 ~i~i~d~~--~~-~l----sp~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~~g~~~~l~~l-~~~g~d~~~~d~~~d 263 (338)
T 2eja_A 195 VVQIFDSW--VN-NL----SLEDYGEYVYPYVNYLISELKDFSDTPVIYFFRGSSSFIDLA-VDYRADALSVDWSVD 263 (338)
T ss_dssp EEEEEETT--GG-GS----CHHHHHHHTHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHH-TTSCCSEEECCTTSC
T ss_pred EEEEecCc--cc-cC----CHHHHHHHhHHHHHHHHHHHhhcCCCCEEEEcCCcHHHHHHH-HHcCCCEEEeCCCCC
Confidence 36788872 22 23 5544 459999999999999887 888877766666677765 557999877655433
Done!