RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14494
(470 letters)
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase
{Escherichia coli [TaxId: 562]}
Length = 269
Score = 190 bits (483), Expect = 6e-58
Identities = 102/277 (36%), Positives = 161/277 (58%), Gaps = 11/277 (3%)
Query: 189 TGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKK 247
A L F + Y R++P++ GTS LS L G +S R+ + + +
Sbjct: 2 VEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQ 61
Query: 248 HYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWC 307
WL++LIWR+FY+ ++ +P++ + + + N + W
Sbjct: 62 ALDGGA--GSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSN--PAHLQAWQ 117
Query: 308 KGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLAS 367
+G TGYP++D+A+ QLNS+G+MHNRLRM+TASFL+K++ I+W+ GE YF ++L D DLA+
Sbjct: 118 EGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAA 177
Query: 368 NNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPWKAS 427
NNG WQW+AS+G + P+FRIFNP Q +KFD++G FIR++LP+L + K +H PWK +
Sbjct: 178 NNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA 237
Query: 428 SYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
+ +YP+PI+EH ++ L Y +
Sbjct: 238 ------QKAGVTLDYPQPIVEHKEARVQTLAAYEAAR 268
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 300
Score = 180 bits (456), Expect = 1e-53
Identities = 89/284 (31%), Positives = 143/284 (50%), Gaps = 8/284 (2%)
Query: 188 KTGASGAKILLNNFIK-KIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIK 246
G S L FI + Y+ NR TS+LS HL FG +S+RK+ L+
Sbjct: 17 SPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQV 76
Query: 247 KHYKTDCIGYF----TWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKN 302
+L + R++ + I + +P + W D +
Sbjct: 77 AWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVD---ENY 133
Query: 303 FLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLND 362
F W +G TGYPL+D+ + +L ++G++H+R+R+V +SF +K + + W+WG YF + L D
Sbjct: 134 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 193
Query: 363 FDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHS 422
DL S+ WQ+ + S+ F RI NP + KFD G ++R++LP+LS+L +IH
Sbjct: 194 ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 253
Query: 423 PWKASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIKNI 466
PW A L+ AGI LG NYP PI+ +K + + + + +
Sbjct: 254 PWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 297
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain
{Synechocystis sp., pcc 6803 [TaxId: 1143]}
Length = 279
Score = 162 bits (411), Expect = 2e-47
Identities = 88/276 (31%), Positives = 147/276 (53%), Gaps = 10/276 (3%)
Query: 183 SSLGIKTGASGAKILLNNFI---KKIKNYNINRNY-PSINGTSYLSIHLRFGTISIRKLV 238
S L + G + L ++ ++K+Y RN + +S S L G +S R +
Sbjct: 4 SVLAFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIY 63
Query: 239 KLIFKFIKKHYKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNY 298
+ + ++ ++ D + + +L+WRDF++ + Y N + N W+ D
Sbjct: 64 QEVKRYEQERVSNDSTHWLIF--ELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQV 121
Query: 299 AKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFAN 358
F W G TGYPL+D+ + +LN +G+M NR R ASFL KN+GI+W+WG +F +
Sbjct: 122 ---RFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFES 178
Query: 359 KLNDFDLASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
L D+D+ SN GNW ++A G ++ F FN QS+++D QG ++R +LP+L L
Sbjct: 179 CLIDYDVCSNWGNWNYTAGIGNDARDFRY-FNIPKQSQQYDPQGTYLRHWLPELKNLPGD 237
Query: 419 YIHSPWKASSYKLEKAGIILGKNYPKPILEHSLSKK 454
IH PW S+ + ++ G+ LG +YP+P + S +
Sbjct: 238 KIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQSVE 273
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase
{Synechococcus elongatus [TaxId: 32046]}
Length = 271
Score = 150 bits (378), Expect = 1e-42
Identities = 99/280 (35%), Positives = 148/280 (52%), Gaps = 15/280 (5%)
Query: 187 IKTGASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFI 245
++ G + A L F + I +Y+ RN+P+ GTS LS L+FG I IR+ +
Sbjct: 2 VEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAH 61
Query: 246 KKHYKTDC-IGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFL 304
+ W +L WR+FYQ LY +P++ + ++ + WE+ +
Sbjct: 62 ALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWT 121
Query: 305 NWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFD 364
GYP++D+A+ QL +G+MHNR RM+ ASFL K++ I+W+ GE +F L D D
Sbjct: 122 QAQT---GYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGD 178
Query: 365 LASNNGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNKYIHSPW 424
LA+NNG WQWSASSG RIFNP Q+KKFD +I+++LP+L + K + S
Sbjct: 179 LAANNGGWQWSASSGM-DPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGE 237
Query: 425 KASSYKLEKAGIILGKNYPKPILEHSLSKKNILKRYNFIK 464
I + YP PI+ H+L +K YN +K
Sbjct: 238 ITP---------IERRGYPAPIVNHNLRQKQFKALYNQLK 268
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
{Thermus thermophilus [TaxId: 274]}
Length = 234
Score = 145 bits (367), Expect = 2e-41
Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 11/230 (4%)
Query: 190 GASGAKILLNNFI-KKIKNYNINRNYPSINGTSYLSIHLRFGTISIRKLVKLIFKFIKKH 248
G A L F+ K+ Y R+ G S LS + G +S R +
Sbjct: 7 GEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFALGVLSPRLA-------AWEA 59
Query: 249 YKTDCIGYFTWLSQLIWRDFYQMILYCYPNVVNKSFKKEYDNILWESDNYAKKNFLNWCK 308
+ G W+++L+WRDF +LY +P + + + W+ D + F W +
Sbjct: 60 ERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQED---EALFQAWYE 116
Query: 309 GYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNMGINWKWGENYFANKLNDFDLASN 368
G TG PL+D+A+ +L+++G++ NR RM A F +K++ + WK E F + L D D A N
Sbjct: 117 GKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVN 176
Query: 369 NGNWQWSASSGCSSQPFFRIFNPIIQSKKFDYQGIFIRKYLPQLSKLSNK 418
WQW+ G + P+FR+FNP++Q ++ D +G +++++ P+ + K
Sbjct: 177 LQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYAPK 226
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus
[TaxId: 32046]}
Length = 202
Score = 54.3 bits (129), Expect = 4e-09
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 7/176 (3%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
++ +F D IL + R+ ++ + EL Q S L++ I
Sbjct: 28 QLIGLFCLDPQILQ----SADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIP 83
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+L +L +AV N D EP RD + LK G + DQ++ ++IL+ +G P
Sbjct: 84 QLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNP 143
Query: 122 YSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKLHKIINNNIISLNDLGF 177
YS++ + K W + K + P + + + + ++ + + +L LGF
Sbjct: 144 YSVYGPFWKNWQAQPKPTPV---ATPTELVDLSPEQLTAIAPLLLSELPTLKQLGF 196
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc
6803 [TaxId: 1143]}
Length = 204
Score = 53.9 bits (128), Expect = 5e-09
Identities = 18/135 (13%), Positives = 55/135 (40%), Gaps = 1/135 (0%)
Query: 2 EVYCVFIFDKNILDPLRSQ-GIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEI 60
+ V+ +D R F+ +S+ L+ +LQ + L++ + + I
Sbjct: 33 AITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVI 92
Query: 61 KKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGK 120
++ ++N + + + + + ++ + K+L ++G + Y + ++
Sbjct: 93 PQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQD 152
Query: 121 PYSIFSFYQKKWIEK 135
+F+ ++K +K
Sbjct: 153 LPDLFTKFRKDIEKK 167
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 185
Score = 53.4 bits (127), Expect = 6e-09
Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 3/134 (2%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
V +F++ + + + L R + +
Sbjct: 26 PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLI---TKRSTDSVASLL 82
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+V + NH Y+P +++RD K L G S+ +++E E+ ++ G+P
Sbjct: 83 DVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRP 142
Query: 122 YSIFSFYQKKWIEK 135
+S+F+ + ++ +
Sbjct: 143 FSMFAAFWERCLSM 156
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId:
562]}
Length = 200
Score = 52.3 bits (124), Expect = 2e-08
Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 10/164 (6%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKE-- 59
V ++I + R+ E I + L I L L+ R
Sbjct: 29 RVLALYIATPRQWATHN----MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASV 84
Query: 60 --IKKLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNK 117
+K++ + ++ + N+ YE RD +++ L+ + C+ F VI ++
Sbjct: 85 EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNVVCEGFDD--SVILPPGAVMTG 142
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCYLQSYPVKSYLNNLVHSSKL 161
+ Y +F+ ++ W+++++ + P ++ S +
Sbjct: 143 NHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPSPSI 186
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus
[TaxId: 274]}
Length = 170
Score = 47.6 bits (112), Expect = 4e-07
Identities = 15/131 (11%), Positives = 44/131 (33%), Gaps = 15/131 (11%)
Query: 2 EVYCVFIFDKNILDPLRSQGIIEDRRIEFIFKSIIELSINLQNYDSDLIIRYAIASKEIK 61
V + + D N L RR + +++ L + L + + +++
Sbjct: 27 PVVGLVVLDPNNLKT-------TPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVP 79
Query: 62 KLVIKLNIDAVMINHDYEPQAIIRDKLIKKELKVIGCKFFSYKDQVIFEKNEILNKTGKP 121
+ +L AV + P RD +++ ++ + + +
Sbjct: 80 EAARRLKAKAVYALTSHTPYGRYRDGRVRE--------ALPVPLHLLPAPHLLPPDLPRA 131
Query: 122 YSIFSFYQKKW 132
Y +++ + + +
Sbjct: 132 YRVYTPFSRLY 142
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 74
Score = 29.3 bits (66), Expect = 0.19
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 10 DKNILDPLRSQGIIEDRR-IEFIFKSIIELSINLQ 43
+ I D R + ++ IF+ I+E+S ++Q
Sbjct: 39 NLPIEDRKREEEVLRRAGEFREIFEKILEVSKDVQ 73
>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 165
Score = 30.2 bits (68), Expect = 0.27
Identities = 5/47 (10%), Positives = 12/47 (25%), Gaps = 12/47 (25%)
Query: 10 DKNILDPLRSQGIIEDRR------------IEFIFKSIIELSINLQN 44
I D R + + + +F I + ++
Sbjct: 30 QLPIEDSGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAIEY 76
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 490
Score = 29.7 bits (66), Expect = 0.74
Identities = 9/85 (10%), Positives = 19/85 (22%), Gaps = 6/85 (7%)
Query: 64 VIKLNIDAVMINHDYEPQAI-----IRDKLIKKELKVI-GCKFFSYKDQVIFEKNEILNK 117
+ + +V P + +L + C +Y V + L
Sbjct: 31 YCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPD 90
Query: 118 TGKPYSIFSFYQKKWIEKVKSNKCY 142
S + N+
Sbjct: 91 FIMNRGGVSLRPGDGVIHSWLNRML 115
>d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 82
Score = 27.7 bits (62), Expect = 0.78
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 14/49 (28%)
Query: 231 TISIRKL------------VKLIFKFIKKHYKTDCIGYF--TWLSQLIW 265
TI +R + LI + + KH+ D +++ W
Sbjct: 5 TIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAW 53
>d1uv0a_ d.169.1.1 (A:) Pancreatitis-associated protein 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 27.8 bits (60), Expect = 1.7
Identities = 11/100 (11%), Positives = 28/100 (28%)
Query: 286 KEYDNILWESDNYAKKNFLNWCKGYTGYPLIDSAIIQLNSSGYMHNRLRMVTASFLIKNM 345
K L + A+ +F++ G I + + S
Sbjct: 35 KRPSGNLVSVLSGAEGSFVSSLVKSIGNSYSYVWIGLHDPTQGTEPNGEGWEWSSSDVMN 94
Query: 346 GINWKWGENYFANKLNDFDLASNNGNWQWSASSGCSSQPF 385
W+ + ++ + L+ + +W + P+
Sbjct: 95 YFAWERNPSTISSPGHCASLSRSTAFLRWKDYNCNVRLPY 134
>d1h99a2 a.142.1.1 (A:169-275) Transcriptional antiterminator LicT
{Bacillus subtilis [TaxId: 1423]}
Length = 107
Score = 25.6 bits (56), Expect = 7.0
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 231 TISIRKLVKLIFKFIKKHYKTD-------CIGYFTWLSQLIWRDFYQMILYCYPNVVNKS 283
I+I K+++ I +K H+K + + T L R F + + + +
Sbjct: 4 IINITKVMEEILSIVKYHFKIEFNEESLHYYRFVTDLKFFAQRLFNGTHMESEDDFLLDT 63
Query: 284 FKKEY 288
K++Y
Sbjct: 64 VKEKY 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.423
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,887,293
Number of extensions: 95359
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 47
Length of query: 470
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 381
Effective length of database: 1,185,626
Effective search space: 451723506
Effective search space used: 451723506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)