BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14495
(766 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 298 bits (762), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 178/436 (40%), Positives = 252/436 (57%), Gaps = 40/436 (9%)
Query: 13 HQSALEYHE--FPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTK 70
+ ALE+H+ FP GKI VIP L ++++L LAY+PGVA C+EI + V++YT+K
Sbjct: 3 REKALEFHKNNFPGNGKIEVIPKVSLESREELTLAYTPGVAEPCKEIARDPGKVYEYTSK 62
Query: 71 GNLVAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDII 130
GNLVAV+++G+ +LG+GNIGPLA PVMEGKA+LFK+F G+D F + I E +P+K DI+
Sbjct: 63 GNLVAVVSDGSRILGLGNIGPLAGLPVMEGKALLFKRFGGVDAFPIMIKEQEPNKFIDIV 122
Query: 131 FSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGXXXXXX 190
++ PTFGGINLEDI +P+CFYI ++LR + IPVFHDDQ GTA +V + +LN
Sbjct: 123 KAIAPTFGGINLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGK 182
Query: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXGFPLQNIFVTDLAGVLYKGRSELMDSN------- 243
G +N+ V +L G+ ++ S+
Sbjct: 183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELV----NGKPRILTSDLDLEKLF 238
Query: 244 --KARFIKDTTARTLS----DIIPNADIFLGLSV--SGVLKKEMVLQMAKNPIILALANP 295
+ +K T + + + +AD+ + + GV+K + + +M ++ I+ LANP
Sbjct: 239 PYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPLANP 298
Query: 296 LPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVH 355
+PEILPE+ K I+ATGRSDYPNQ+NN+L FP IFRGALD A TIT M IAA
Sbjct: 299 VPEILPEEAKKA-GARIVATGRSDYPNQINNLLGFPGIFRGALDVRARTITDSMIIAAAK 357
Query: 356 AIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGVATKP 415
AIA + + E S+ E IIP P +P + + A AVA A K GVA
Sbjct: 358 AIASIVE-EPSE---------------ENIIPSPLNPIVYAREARAVAEEAMKEGVARTK 401
Query: 416 IKD--IEIYTNHLQKF 429
+K +E +T L +F
Sbjct: 402 VKGEWVEEHTIRLIEF 417
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 281 bits (720), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 175/436 (40%), Positives = 249/436 (57%), Gaps = 40/436 (9%)
Query: 13 HQSALEYHE--FPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTK 70
+ ALE+H+ FP GKI VIP L ++++L LAY+PGVA C+EI + V++YT+K
Sbjct: 3 REKALEFHKNNFPGNGKIEVIPKVSLESREELTLAYTPGVAEPCKEIARDPGKVYEYTSK 62
Query: 71 GNLVAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDII 130
GNLVAV+++G+ +LG+GNIGPLA PV EGKA+LFK+F G+D F + I E +P+K DI+
Sbjct: 63 GNLVAVVSDGSRILGLGNIGPLAGLPVXEGKALLFKRFGGVDAFPIXIKEQEPNKFIDIV 122
Query: 131 FSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGXXXXXX 190
++ PTFGGINLEDI +P+CFYI ++LR + IPVFHDDQ GTA +V + +LN
Sbjct: 123 KAIAPTFGGINLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGK 182
Query: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXGFPLQNIFVTDLAGVLYKGRSELMDSN------- 243
G +N+ V +L G+ ++ S+
Sbjct: 183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELV----NGKPRILTSDLDLEKLF 238
Query: 244 --KARFIKDTTARTLS----DIIPNADIFLGLSV--SGVLKKEMVLQMAKNPIILALANP 295
+ +K T + + + +AD+ + + GV+K + + + ++ I+ LANP
Sbjct: 239 PYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQWIEKXNEDAIVFPLANP 298
Query: 296 LPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVH 355
+PEILPE+ K I+ATGRSDYPNQ+NN+L FP IFRGALD A TIT IAA
Sbjct: 299 VPEILPEEAKKA-GARIVATGRSDYPNQINNLLGFPGIFRGALDVRARTITDSXIIAAAK 357
Query: 356 AIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGVATKP 415
AIA + + E S+ E IIP P +P + + A AVA A K GVA
Sbjct: 358 AIASIVE-EPSE---------------ENIIPSPLNPIVYAREARAVAEEAXKEGVARTK 401
Query: 416 IKD--IEIYTNHLQKF 429
+K +E +T L +F
Sbjct: 402 VKGEWVEEHTIRLIEF 417
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 278 bits (711), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 151/339 (44%), Positives = 200/339 (58%), Gaps = 7/339 (2%)
Query: 26 GKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNLVAVITNGTAVLG 85
GK+ V P + + DL++AY+PGVAS I + + TTK N VAVI++GTAVLG
Sbjct: 20 GKLEVQPKVDIKTKHDLSIAYTPGVASVSSAIAKDKTLAYDLTTKKNTVAVISDGTAVLG 79
Query: 86 MGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFSLEPTFGGINLEDI 145
+G+IGP A+ PVMEGKA LFK FAG+D + ++ D +++ I+ +L PTFGGINLEDI
Sbjct: 80 LGDIGPEAAMPVMEGKAALFKAFAGVDAIPIVLDTKDTEEIISIVKALAPTFGGINLEDI 139
Query: 146 KAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGXXXXXXXXXXXXXXXXXXXXX 205
AP CF IE++L IPVFHDDQHGTAI+V +AI N
Sbjct: 140 SAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSA 199
Query: 206 XXXXXXXXXXXGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT----ARTLSDIIP 261
G + V D G++ + + + + K T + TL D +
Sbjct: 200 GLSITRKLLAAG--ATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALE 257
Query: 262 NADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYP 321
ADIF+G+S GVLK E + +MA P+I A+ANP+PEI P++ I+ TGRSD+P
Sbjct: 258 GADIFIGVSAPGVLKAEWISKMAARPVIFAMANPIPEIYPDEALEA-GAYIVGTGRSDFP 316
Query: 322 NQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADL 360
NQ+NNVL FP IFRGALD+ A TIT EM+IAA IA L
Sbjct: 317 NQINNVLAFPGIFRGALDARAKTITVEMQIAAAKGIASL 355
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 254 bits (649), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/397 (38%), Positives = 220/397 (55%), Gaps = 27/397 (6%)
Query: 16 ALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNLVA 75
ALE H F + GKI + +++ L+L Y+PGVA + + YT++ N VA
Sbjct: 5 ALELHRF-LKGKIRTALPVEKVDRETLSLLYTPGVADVARACAEDPEKTYVYTSRWNTVA 63
Query: 76 VITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFSLEP 135
V+++G+AVLG+GNIGP + PVMEGKA LFK FA ID F + ++E++ +K+ I+ SLEP
Sbjct: 64 VVSDGSAVLGLGNIGPYGALPVMEGKAFLFKAFADIDAFPICLSESEEEKIISIVKSLEP 123
Query: 136 TFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGXXXXXXXXXXX 195
+FGGINLEDI AP+CF I ++L M IPVFHDDQ GTA++V +A LN
Sbjct: 124 SFGGINLEDIGAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEV 183
Query: 196 XXXXXXXXXXXXXXXXXXXXXGFPLQNIFVTDLAGVLYKGRSE-LMDSNKARFIKDTTAR 254
G ++N+ D G+L + E ++ + T
Sbjct: 184 KVVVNGIGAAGYNIVKFLLDLG--VKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE 241
Query: 255 TLSD----IIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRND 310
LS + AD F+G+S +LK E + +M++ P+I ALANP+PEI PE +
Sbjct: 242 RLSGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVPEIDPELAREA-GA 300
Query: 311 AIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVN 370
I+ATGRSD+PNQVNN+L FP I +GA++ + IT+ M ++AV AIA + E
Sbjct: 301 FIVATGRSDHPNQVNNLLAFPGIMKGAVEK-RSKITKNMLLSAVEAIARSCEPE------ 353
Query: 371 TTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAE 407
E IIP+ FD ++ + + AV +AE
Sbjct: 354 -----------PERIIPEAFDMKVHLNVYTAVKGSAE 379
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 242 bits (618), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 215/396 (54%), Gaps = 27/396 (6%)
Query: 16 ALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNLVA 75
ALE H F + GKI + +++ L+L Y+PGVA + + YT++ N VA
Sbjct: 15 ALEVHRF-LKGKIRTALPVEKVDRETLSLLYTPGVADVARACAEDPEKTYVYTSRWNTVA 73
Query: 76 VITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFSLEP 135
V+++G+AVLG+GNIGP + PV EGKA LFK FA ID F + ++E++ +K+ I+ SLEP
Sbjct: 74 VVSDGSAVLGLGNIGPYGALPVXEGKAFLFKAFADIDAFPICLSESEEEKIISIVKSLEP 133
Query: 136 TFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGXXXXXXXXXXX 195
+FGGINLEDI AP+CF I ++L IPVFHDDQ GTA++V +A LN
Sbjct: 134 SFGGINLEDIGAPKCFRILQRLSEEXNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEV 193
Query: 196 XXXXXXXXXXXXXXXXXXXXXGFPLQNIFVTDLAGVLYKGRSE-LMDSNKARFIKDTTAR 254
G ++N+ D G+L + E ++ + T
Sbjct: 194 KVVVNGIGAAGYNIVKFLLDLG--VKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE 251
Query: 255 TLSD----IIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRND 310
LS + AD F+G+S +LK E + + ++ P+I ALANP+PEI PE +
Sbjct: 252 RLSGDLETALEGADFFIGVSRGNILKPEWIKKXSRKPVIFALANPVPEIDPELAREA-GA 310
Query: 311 AIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVN 370
I+ATGRSD+PNQVNN+L FP I +GA++ + IT+ ++AV AIA + E
Sbjct: 311 FIVATGRSDHPNQVNNLLAFPGIXKGAVEK-RSKITKNXLLSAVEAIARSCEPE------ 363
Query: 371 TTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAA 406
E IIP+ FD ++ + + AV +A
Sbjct: 364 -----------PERIIPEAFDXKVHLNVYTAVKGSA 388
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 196 bits (497), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 137/417 (32%), Positives = 200/417 (47%), Gaps = 41/417 (9%)
Query: 16 ALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNLVA 75
A + H+F GKI ++P L+ + Y+PGV+ I N+++ Y+ +GN V
Sbjct: 36 AEKVHKF-YKGKIQIMPKCTLAGFNWFNAYYTPGVSRISTNIRDNNDSSLFYSLRGNFVG 94
Query: 76 VITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEIN------ETDPDKLCDI 129
V+++ T VLG G++ P VMEGKA+L K GID + I+ + DPD + +
Sbjct: 95 VVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDAVPICIDSKNKEGKNDPDAVIEF 154
Query: 130 IFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGXXXXX 189
+ ++ TFG INLEDI P C+ I LR IPV+HDDQ GTA + + +LN
Sbjct: 155 VQRIQHTFGAINLEDISQPNCYKILDVLRESCDIPVWHDDQQGTASVTLAGLLNALKLVK 214
Query: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXXGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK 249
G + I + D G L+ GR ++ RF +
Sbjct: 215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDI--KKDTRFYR 272
Query: 250 -----DTTA----RTLSDIIPNADIFLGLSV--SGVLKKEMVLQMAKNPIILALANPLPE 298
+TT ++++ AD+ + LS GV+K E + M + PI+ ANP+PE
Sbjct: 273 KWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCANPVPE 332
Query: 299 ILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIA 358
I P + K I+ATGR D+PNQVNN + FP I +GAL A IT M IAA A+A
Sbjct: 333 IYPYEAKEA-GAYIVATGRGDFPNQVNNSVGFPGILKGALIVRARKITDNMAIAASRALA 391
Query: 359 DLAQ---IEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGVA 412
+ A+ I +I+ T +P + K A VA+ A K GVA
Sbjct: 392 EFAEKRGINPDNIIGTMD-----------------EPGIFPKEAADVAMQAIKDGVA 431
>pdb|1TD9|A Chain A, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|B Chain B, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|C Chain C, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|D Chain D, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|E Chain E, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|F Chain F, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1XCO|A Chain A, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|B Chain B, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|C Chain C, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|D Chain D, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|E Chain E, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|F Chain F, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
Length = 329
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 150/309 (48%), Gaps = 6/309 (1%)
Query: 456 YSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQ 515
+ EG +E+IL A+ + + PI+IG ++ K+L L + +I DP +
Sbjct: 27 FPEGLDERILEAVSKLAGNKVLNPIVIGNENEIQAKAKELNLTLG---GVKIYDPHTYEG 83
Query: 516 YKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNY 575
+D + ++ RKG + K G M ++KG ADG++ G ST +
Sbjct: 84 MEDLVQAFVE--RRKGKATEEQARKALLDENYFGTMLVYKGLADGLVSGAAHSTADTVRP 141
Query: 576 IDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLK 635
QII K + + + + Q + D IN P++++L+EI I +A ++
Sbjct: 142 ALQIIKTKEGVKKTSGVFIMARGEEQYVFADCAINIAPDSQDLAEIAIESANTAKMFDIE 201
Query: 636 PRVALLXXXXXXXXXXXXAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNS 695
PRVA+L K+ A+K+ +++ PEL +DGE + A + K+ P+S
Sbjct: 202 PRVAMLSFSTKGSAKSDETEKVADAVKIAKEKAPELTLDGEFQFDAAFVPSVAEKKAPDS 261
Query: 696 KLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVRRIVNM 755
++ GDAN+ V P++E+ NI Y + + GN A+GPIL G + P++ L+ + N+
Sbjct: 262 EIKGDANVFVFPSLEAGNIGYKIAQ-RLGNFEAVGPILQGLNMPVNDLSRGCNAEDVYNL 320
Query: 756 TALCVIDAL 764
+ AL
Sbjct: 321 ALITAAQAL 329
>pdb|4E4R|A Chain A, Eutd Phosphotransacetylase From Staphylococcus Aureus
Length = 331
Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 156/312 (50%), Gaps = 12/312 (3%)
Query: 458 EGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYK 517
EGE+E++L A + + PI++G ++ +KL L I + E+I+P ++
Sbjct: 26 EGEDERVLTAATQLQATDYVTPIVLGDETKVQSLAQKLNLDIS---NIELINPATSELKA 82
Query: 518 DYWKTYLSMTNRKG-MIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYI 576
+ ++++ RKG E+ AQ + N G ++ G ADG++ G ST +
Sbjct: 83 ELVQSFVE--RRKGKTTEEQAQELLNNVN-YFGTXLVYAGKADGLVSGAAHSTGDTVRPA 139
Query: 577 DQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLKP 636
QII K + + + I D Q + D IN +++ L+EI + +AK S G P
Sbjct: 140 LQIIKTKPGVSRTSGIFFXIKGDEQYIFGDCAINPELDSQGLAEIAVESAKSALSFGXDP 199
Query: 637 RVALLXXXXXXXXXXXXAHKMRTALKLIQKQMPE--LE--IDGEMNGNYALNNELLHKQI 692
+VA L K++ A+KL Q++ E LE IDGE + A+ + K+
Sbjct: 200 KVAXLSFSTKGSAKSDDVTKVQEAVKLAQQKAEEEKLEAIIDGEFQFDAAIVPGVAEKKA 259
Query: 693 PNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVRRI 752
P +KL GDAN+ V P++E+ NI Y + + G A+GP+L G + P++ L+ ++ +
Sbjct: 260 PGAKLQGDANVFVFPSLEAGNIGYKIAQRLGGYD-AVGPVLQGLNSPVNDLSRGCSIEDV 318
Query: 753 VNMTALCVIDAL 764
N++ + AL
Sbjct: 319 YNLSFITAAQAL 330
>pdb|1R5J|A Chain A, Crystal Structure Of A Phosphotransacetylase From
Streptococcus Pyogenes
pdb|1R5J|B Chain B, Crystal Structure Of A Phosphotransacetylase From
Streptococcus Pyogenes
Length = 337
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 149/314 (47%), Gaps = 14/314 (4%)
Query: 456 YSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQ 515
+ EG +E+++RA + E L PI++G+++ + + KL + + II+P+
Sbjct: 29 FPEGNDERVVRAAARLKFEGLLEPIILGQSEEVRNLLTKLGFADQ---DYTIINPNEYAD 85
Query: 516 YKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNY 575
+ + ++ + K +E A +R N G + G ADG + G + ST +
Sbjct: 86 FDKXKEAFVEVRKGKATLED-ADKXLRDVN-YFGVXLVKXGLADGXVSGAIHSTADTVRP 143
Query: 576 IDQIIGKKNKTNIYAAMSNLILMDRQ-----LMLVDTHINENPNAEELSEITILAAKKMF 630
QII K K I + S + L +R+ + D IN +P A+EL+EI + A+
Sbjct: 144 ALQII--KTKPGI-SRTSGVFLXNRENTSERYVFADCAINIDPTAQELAEIAVNTAETAK 200
Query: 631 SLGLKPRVALLXXXXXXXXXXXXAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHK 690
+ P++A L K+R A ++ P+L +DGE+ + A E
Sbjct: 201 IFDIDPKIAXLSFSTKGSGKAPQVDKVREATEIATGLNPDLALDGELQFDAAFVPETAAI 260
Query: 691 QIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVR 750
+ P+S + G AN V P+++S NI Y + + G AIGPIL G +KP++ L+ ++
Sbjct: 261 KAPDSAVAGQANTFVFPDLQSGNIGYKIAQ-RLGXFDAIGPILQGLNKPVNDLSRGSSAE 319
Query: 751 RIVNMTALCVIDAL 764
I + + A+
Sbjct: 320 DIYKLAIITAAQAI 333
>pdb|1VMI|A Chain A, Crystal Structure Of Putative Phosphate Acetyltransferase
(Np_416953.1) From Escherichia Coli K12 At 2.32 A
Resolution
Length = 355
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 146/316 (46%), Gaps = 23/316 (7%)
Query: 456 YSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIH---FEIIDPDF 512
+ + ++++L+A Q + + LA PIL+ L Q + G+ ++IDP
Sbjct: 31 FPDALDQRVLKAAQYLHQQGLATPILVANPFELRQ------FALSHGVAXDGLQVIDPHG 84
Query: 513 N-KQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKL 571
N +++ +L+ K + +L A + G AD I G L ST
Sbjct: 85 NLAXREEFAHRWLARAGEKTPPDALEKLTD---PLXFAAAXVSAGKADVCIAGNLSSTAN 141
Query: 572 HLNYIDQIIGKKNKTNIYAAMSNLILMDRQ-----LMLVDTHINENPNAEELSEITILAA 626
L +IIG + +S++ L Q L D + P A +L++I + +A
Sbjct: 142 VLRAGLRIIGLQPGCKT---LSSIFLXLPQYSGPALGFADCSVVPQPTAAQLADIALASA 198
Query: 627 KKMFSL-GLKPRVALLXXXXXXXXXXXXAHKMRTALKLIQKQMPELEIDGEMNGNYALNN 685
+ ++ G +PRVA L ++ A ++++++ P+L +DGE+ + A
Sbjct: 199 ETWRAITGEEPRVAXLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQFDAAFVP 258
Query: 686 ELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTS 745
E+ ++ P S L G AN+ V P++E+ NI Y + + G A+GP++ G + P H L+
Sbjct: 259 EVAAQKAPASPLQGKANVXVFPSLEAGNIGYKIAQRLGGY-RAVGPLIQGLAAPXHDLSR 317
Query: 746 SATVRRIVNMTALCVI 761
+V+ I+ + + +
Sbjct: 318 GCSVQEIIELALVAAV 333
>pdb|1QZT|A Chain A, Phosphotransacetylase From Methanosarcina Thermophila
pdb|1QZT|B Chain B, Phosphotransacetylase From Methanosarcina Thermophila
pdb|1QZT|C Chain C, Phosphotransacetylase From Methanosarcina Thermophila
pdb|1QZT|D Chain D, Phosphotransacetylase From Methanosarcina Thermophila
pdb|2AF3|C Chain C, Phosphotransacetylase From Methanosarcina Thermophila
Soaked With Coenzyme A
pdb|2AF3|D Chain D, Phosphotransacetylase From Methanosarcina Thermophila
Soaked With Coenzyme A
Length = 333
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 144/321 (44%), Gaps = 24/321 (7%)
Query: 458 EGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYK 517
E E+ + L+A +++ +A +L+G ++ L L +I+DP ++
Sbjct: 23 ETEDIRTLQAAAKILERGIADIVLVGNEADIKALAGDLDLS-----KAKIVDPKTYEKKD 77
Query: 518 DYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYID 577
+Y + + KG+ + A M M G DG++ G S+ L
Sbjct: 78 EYINAFYELRKHKGITLENAAEIMSD-YVYFAVMMAKLGEVDGVVSGAAHSSSDTLRPAV 136
Query: 578 QIIGKKNKTNIYAAMSNLILM----------DRQLMLVDTHINENPNAEELSEITILAAK 627
QI+ KT AA+++ + D + D+ + E P+ E+++ I +++AK
Sbjct: 137 QIV----KTAKGAALASAFFIISVPDCEYGSDGTFLFADSGMVEMPSVEDVANIAVISAK 192
Query: 628 KMFSLGLK--PRVALLXXXXXXXXXXXXAHKMRTALKLIQKQMPELEIDGEMNGNYALNN 685
F L ++ P+VA+L + KL Q+ P++ IDGE+ + A+
Sbjct: 193 -TFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVP 251
Query: 686 ELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTS 745
++ + P S + G AN+ + P++ NIAY + + + A GPI G +KPI+ L+
Sbjct: 252 KVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQRLA-KAEAYGPITQGLAKPINDLSR 310
Query: 746 SATVRRIVNMTALCVIDALSK 766
+ IV A+ + A ++
Sbjct: 311 GCSDEDIVGAVAITCVQAAAQ 331
>pdb|2AF4|C Chain C, Phosphotransacetylase From Methanosarcina Thermophila Co-
Crystallized With Coenzyme A
pdb|2AF4|D Chain D, Phosphotransacetylase From Methanosarcina Thermophila Co-
Crystallized With Coenzyme A
Length = 333
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 144/321 (44%), Gaps = 24/321 (7%)
Query: 458 EGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYK 517
E E+ + L+A +++ +A +L+G ++ L L +I+DP ++
Sbjct: 23 ETEDIRTLQAAAKILERGIADIVLVGNEADIKALAGDLDLS-----KAKIVDPKTYEKKD 77
Query: 518 DYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYID 577
+Y + + KG+ + A M M G DG++ G S+ L
Sbjct: 78 EYINAFYELRKHKGITLENAAEIMSDY-VYFAVMMAKLGEVDGVVSGAAHSSSDTLRPAV 136
Query: 578 QIIGKKNKTNIYAAMSNLILM----------DRQLMLVDTHINENPNAEELSEITILAAK 627
QI+ KT AA+++ + D + D+ + E P+ E+++ I +++AK
Sbjct: 137 QIV----KTAKGAALASAFFIISVPDXEYGSDGTFLFADSGMVEMPSVEDVANIAVISAK 192
Query: 628 KMFSLGLK--PRVALLXXXXXXXXXXXXAHKMRTALKLIQKQMPELEIDGEMNGNYALNN 685
F L ++ P+VA+L + KL Q+ P++ IDGE+ + A+
Sbjct: 193 -TFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVP 251
Query: 686 ELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTS 745
++ + P S + G AN+ + P++ NIAY + + + A GPI G +KPI+ L+
Sbjct: 252 KVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQRLA-KAEAYGPITQGLAKPINDLSR 310
Query: 746 SATVRRIVNMTALCVIDALSK 766
+ IV A+ + A ++
Sbjct: 311 GCSDEDIVGAVAITCVQAAAQ 331
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 125/342 (36%), Gaps = 63/342 (18%)
Query: 76 VITNGTAVLGMGNIGPLASK-PVMEGKAVLFKKFAGIDVFD-----LEI---NET---DP 123
V+T+G +LG+G++G PV GK L+ G+ L++ NET DP
Sbjct: 137 VVTDGERILGLGDLGCYGXGIPV--GKLALYTACGGVKPHQCLPVXLDVGTDNETLLKDP 194
Query: 124 ----------------DKLCDIIFSLEPTFGG---INLEDIKAPECFYIEKKLRNHMKIP 164
D L + ++ +G I ED F + K RN K
Sbjct: 195 LYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLIQFEDFANANAFRLLHKYRN--KYC 252
Query: 165 VFHDDQHGTAIIVGSAILNGXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXX 216
F+DD GTA + + +L
Sbjct: 253 TFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVXAXQKEGVSK 312
Query: 217 GFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPN--ADIFLGLSVSGV 274
++ I+ D G++ KGR+ L + + + L DI+ + + +G++ G
Sbjct: 313 EEAIKRIWXVDSKGLIVKGRASLTPEKEHFAHEHCEXKNLEDIVKDIKPTVLIGVAAIGG 372
Query: 275 LKKEMVLQ----MAKNPIILALANPLP--EILPEDI-KSVRNDAIIATG----------- 316
+ +LQ K PII AL+NP E E + K I A+G
Sbjct: 373 AFTQQILQDXAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSG 432
Query: 317 RSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIA 358
++ YP Q NN FP + G + G I ++ + IA
Sbjct: 433 QTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIA 474
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 146/393 (37%), Gaps = 80/393 (20%)
Query: 42 LALAYSPGVASACEE---IVSNSNNVF-KYTTKGNLVAV-------------ITNGTAVL 84
+ + Y+P V AC++ + +F +G++ +V +T+G +L
Sbjct: 109 MPIVYTPTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERIL 168
Query: 85 GMGNIGPLASKPVMEGKAVLFKKFAGID-------VFDLEI-NET---DP---------- 123
G+G++G + GK L+ G++ + D+ NE DP
Sbjct: 169 GLGDLG-CNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRV 227
Query: 124 ------DKLCDIIFSLEPTFGG---INLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTA 174
D L + + ++ +G I ED F + K RN + F+DD GTA
Sbjct: 228 RGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRN--QYCTFNDDIQGTA 285
Query: 175 IIVGSAILNGXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXGFP----LQNIFVT 226
+ + +L G P ++ I++
Sbjct: 286 SVAVAGLLAALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKEGLPKEKAIKKIWLV 345
Query: 227 DLAGVLYKGRSELMDSNKARFIKDTTARTLSDII----PNADIFLGLSVSGVLKKEMVLQ 282
D G++ KGR+ L + + + L I+ P A I + ++ G ++++
Sbjct: 346 DSKGLIVKGRASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIGVA-AIGGAFSEQILKD 404
Query: 283 MA---KNPIILALANPLP--EILPEDI-KSVRNDAIIATG-----------RSDYPNQVN 325
MA + PII AL+NP E E K + AI A+G ++ YP Q N
Sbjct: 405 MAAFNERPIIFALSNPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGN 464
Query: 326 NVLCFPYIFRGALDSGATTITREMEIAAVHAIA 358
N FP + G + G IT + + IA
Sbjct: 465 NSYVFPGVALGVVACGLRQITDNIFLTTAEVIA 497
>pdb|3TNG|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase From Listeria Monocytogenes
Egd-E.
pdb|3U9E|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Coa.
pdb|3U9E|B Chain B, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Coa.
pdb|3UF6|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Cod (3'-Dephosphocoenzyme A)
pdb|3UF6|B Chain B, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Cod (3'-Dephosphocoenzyme A)
Length = 291
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 17/199 (8%)
Query: 551 MAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMD-----RQLMLV 605
+A+ AD ++ G + + L ++ K+N +S + + D + L++
Sbjct: 80 LAVKNKEADILVKGFIPTATL----XHHVLKKENGLRTDQLLSQIAIFDIPTYHKPLLIT 135
Query: 606 DTHINENPNAEELSEITILAAKKMFSLGLK-PRVALLXXXXXXXXXXXXAHKMRTALKLI 664
D N P +E IT A +G+ P++ALL + A +++
Sbjct: 136 DCAXNVAPKTKEKIAITENALAVAHQIGITNPKIALLSAVEEVTAKXPSTLE---AQEVV 192
Query: 665 QKQMPELEIDGEMNGNYALNNEL-LHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITS 723
Q ++ + G + + A++ E LHK I +S G+A++L+ PNIE+ N Y L +
Sbjct: 193 QHFGNQISVSGPLALDVAISKEAALHKGITDSS-AGEADILIAPNIETGNALYKSLVYFA 251
Query: 724 GNGVAIGPILLGCSKPIHI 742
G +G ++G PI I
Sbjct: 252 --GAKVGSAVVGAKVPIVI 268
>pdb|1YCO|A Chain A, Crystal Structure Of A Branched-Chain Phosphotransacylase
From Enterococcus Faecalis V583
pdb|1YCO|B Chain B, Crystal Structure Of A Branched-Chain Phosphotransacylase
From Enterococcus Faecalis V583
Length = 279
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 106/260 (40%), Gaps = 21/260 (8%)
Query: 490 QHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIG 549
Q +KK + + F + D + N ++ WK Y+ ++ + ++ L
Sbjct: 16 QLVKKALKEAEQPLQFIVFDTNENLDTENLWK-YVHCSDEAAVAQEAVSL---------- 64
Query: 550 AMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNI-YAAMSNLILMDRQLMLVDTH 608
+ G A ++ GI+ + L + KNK + + AM L + +L D
Sbjct: 65 ---VATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELP-AGKTFLLTDCA 120
Query: 609 INENPNAEELSEITILAAKKMFSLGLK-PRVALLXXXXXXXXXXXXAHKMRTALKLIQKQ 667
+N P L EI A + LGL P++ALL + + Q
Sbjct: 121 MNIAPTQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFNDQ 180
Query: 668 MPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGV 727
E + G ++ + A + E + + + + GDA++LV+P I+ N Y +T
Sbjct: 181 Q-EATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYK--SLTLFGHA 237
Query: 728 AIGPILLGCSKPIHILTSSA 747
+G ++G P+ +LTS +
Sbjct: 238 KVGGTIVGTKVPV-VLTSRS 256
>pdb|3MZK|B Chain B, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|C Chain C, Sec13SEC16 COMPLEX, S.CEREVISIAE
Length = 441
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 67 YTTKGNLVAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKL 126
+ TK L A + + +GN+ PL+++PVM V+F+ ++ F+ + D++
Sbjct: 287 FLTKKGLTAA---ASTLFIIGNV-PLSNEPVMADSDVIFESIGNMNTFESILW----DEI 338
Query: 127 CDIIFSLEPTFGGIN 141
+ IFS +P F G +
Sbjct: 339 YEYIFSYDPKFKGFS 353
>pdb|2X54|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|0 Chain 0, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X5A|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|0 Chain 0, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
Length = 372
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 300 LPEDIKSVRNDAIIATGRSDY---PNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHA 356
+P I N AII DY PN+ NN++ + Y F ++ +G TI R+ E ++ H
Sbjct: 121 VPNAITKTTNFAII-----DYLIDPNK-NNLMSYGYFFNSSIFAGKATINRKAETSSAHD 174
Query: 357 IA 358
+A
Sbjct: 175 VA 176
>pdb|2WZP|R Chain R, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
Length = 375
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 300 LPEDIKSVRNDAIIATGRSDY---PNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHA 356
+P I N AII DY PN+ NN++ + Y F ++ +G TI R+ E ++ H
Sbjct: 121 VPNAITKTTNFAII-----DYLIDPNK-NNLMSYGYFFNSSIFAGKATINRKAETSSAHD 174
Query: 357 IA 358
+A
Sbjct: 175 VA 176
>pdb|2X53|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|1 Chain 1, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
Length = 375
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 300 LPEDIKSVRNDAIIATGRSDY---PNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHA 356
+P I N AII DY PN+ NN++ + Y F ++ +G TI R+ E ++ H
Sbjct: 121 VPNAITKTTNFAII-----DYLIDPNK-NNLMSYGYFFNSSIFAGKATINRKAETSSAHD 174
Query: 357 IA 358
+A
Sbjct: 175 VA 176
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 27/136 (19%)
Query: 221 QNIFVTDLAGVLYKGRSELMDSNKARF-------IKDTTARTLSDIIPNADIFLGLSVSG 273
+ I++ D G+L KGR +DS + F I DT ++ + P+ +G++ +G
Sbjct: 320 KKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPST--IIGVAGAG 377
Query: 274 VL-KKEMVLQMA---KNPIILALANPL--PEILPEDIKSVRNDAI------------IAT 315
L +++ MA + P+I AL+NP E E+ ++ +
Sbjct: 378 RLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTD 437
Query: 316 GRSDYPNQVNNVLCFP 331
GR P Q NNV FP
Sbjct: 438 GRVFTPGQGNNVYIFP 453
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 221 QNIFVTDLAGVLYKGRSELMDSNKARF-------IKDTTARTLSDIIPNADIFLGLSVSG 273
+ I+ D G+L KGR +DS + F I DT ++ + P+ +G++ +G
Sbjct: 319 KKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPST--IIGVAGAG 376
Query: 274 VLKKEMVLQ----MAKNPIILALANPLP--EILPEDIKSVRNDAII------------AT 315
L V++ + + P+I AL+NP E E+ ++ +
Sbjct: 377 RLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTD 436
Query: 316 GRSDYPNQVNNVLCFP 331
GR P Q NNV FP
Sbjct: 437 GRVFTPGQGNNVYIFP 452
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 41/186 (22%)
Query: 459 GEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKK-LRLRIKPGIHFEII--------- 508
G E+++ RAIQV+ P+L+G + + + I + L RI G E++
Sbjct: 190 GREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249
Query: 509 ----------DPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNA 558
DF K++K K TN I++ +T+IGA A G
Sbjct: 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE--------IHTIIGAGAASGGQV 301
Query: 559 DG--MICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHIN-ENPNA 615
D +I +L S K+ ++IG + Y SN+ DR L I+ P+
Sbjct: 302 DAANLIKPLLSSGKI------RVIG----STTYQEFSNIFEKDRALARRFQKIDITEPSI 351
Query: 616 EELSEI 621
EE +I
Sbjct: 352 EETVQI 357
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 221 QNIFVTDLAGVLYKGRSELMDSNKARF-------IKDTTARTLSDIIPNADIFLGLSVSG 273
+ I+ D G+L KGR +DS + F I DT ++ + P+ +G++ +G
Sbjct: 317 KKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPST--IIGVAGAG 374
Query: 274 VLKKEMVLQ----MAKNPIILALANPLP--EILPEDIKSVRNDAII------------AT 315
L V++ + + P+I AL+NP E E+ ++ +
Sbjct: 375 RLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTD 434
Query: 316 GRSDYPNQVNNVLCFP 331
GR P Q NNV FP
Sbjct: 435 GRVFTPGQGNNVYIFP 450
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 221 QNIFVTDLAGVLYKGRSELMDSNKARF-------IKDTTARTLSDIIPNADIFLGLSVSG 273
+ I+ D G+L KGR +DS + F I DT ++ + P+ +G++ +G
Sbjct: 339 KKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPST--IIGVAGAG 396
Query: 274 VLKKEMVLQ----MAKNPIILALANPLP--EILPEDIKSVRNDAII------------AT 315
L V++ + + P+I AL+NP E E+ ++ +
Sbjct: 397 RLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTD 456
Query: 316 GRSDYPNQVNNVLCFP 331
GR P Q NNV FP
Sbjct: 457 GRVFTPGQGNNVYIFP 472
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 221 QNIFVTDLAGVLYKGRSELMDSNKARF-------IKDTTARTLSDIIPNADIFLGLSVSG 273
+ I+ D G+L KGR +DS + F I DT ++ + P+ +G++ +G
Sbjct: 339 KKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPST--IIGVAGAG 396
Query: 274 VLKKEMVLQ----MAKNPIILALANPLP--EILPEDIKSVRNDAII------------AT 315
L V++ + + P+I AL+NP E E+ ++ +
Sbjct: 397 RLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTD 456
Query: 316 GRSDYPNQVNNVLCFP 331
GR P Q NNV FP
Sbjct: 457 GRVFTPGQGNNVYIFP 472
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,046,295
Number of Sequences: 62578
Number of extensions: 796123
Number of successful extensions: 2169
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2118
Number of HSP's gapped (non-prelim): 37
length of query: 766
length of database: 14,973,337
effective HSP length: 106
effective length of query: 660
effective length of database: 8,340,069
effective search space: 5504445540
effective search space used: 5504445540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)