Query psy14495
Match_columns 766
No_of_seqs 318 out of 2322
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 21:14:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07232 bifunctional malic en 100.0 3E-205 7E-210 1773.2 80.5 751 11-765 2-752 (752)
2 PRK12861 malic enzyme; Reviewe 100.0 1E-204 2E-209 1765.4 78.6 751 11-765 6-762 (764)
3 PRK12862 malic enzyme; Reviewe 100.0 3E-190 6E-195 1659.8 79.6 752 10-765 9-761 (763)
4 COG0281 SfcA Malic enzyme [Ene 100.0 3E-123 6E-128 1001.8 38.1 413 10-437 15-430 (432)
5 PRK13529 malate dehydrogenase; 100.0 8E-114 2E-118 966.0 34.5 366 40-424 98-549 (563)
6 PLN03129 NADP-dependent malic 100.0 5E-113 1E-117 962.4 35.6 391 5-424 98-569 (581)
7 PTZ00317 NADP-dependent malic 100.0 2E-112 5E-117 953.8 34.9 368 39-424 99-552 (559)
8 KOG1257|consensus 100.0 7E-111 2E-115 914.6 30.1 367 40-424 112-557 (582)
9 COG0280 Pta Phosphotransacetyl 100.0 4.3E-78 9.3E-83 643.4 36.8 324 436-766 1-326 (327)
10 PRK09653 eutD phosphotransacet 100.0 4.3E-75 9.4E-80 631.2 38.5 321 436-765 3-323 (324)
11 PF01515 PTA_PTB: Phosphate ac 100.0 1.2E-73 2.6E-78 616.8 35.5 317 436-760 2-319 (319)
12 TIGR00651 pta phosphate acetyl 100.0 6.2E-73 1.3E-77 606.8 35.1 302 454-760 1-303 (303)
13 PRK05632 phosphate acetyltrans 100.0 5.6E-70 1.2E-74 643.7 41.8 404 331-764 270-684 (684)
14 cd05312 NAD_bind_1_malic_enz N 100.0 5.4E-71 1.2E-75 579.0 24.2 240 170-424 1-273 (279)
15 PF03949 Malic_M: Malic enzyme 100.0 6.5E-70 1.4E-74 564.3 17.5 223 170-407 1-255 (255)
16 cd00762 NAD_bind_malic_enz NAD 100.0 5.2E-68 1.1E-72 549.1 21.2 222 170-406 1-254 (254)
17 PRK11890 phosphate acetyltrans 100.0 2.7E-61 5.9E-66 514.2 34.4 289 436-764 9-304 (312)
18 PRK05805 phosphate butyryltran 100.0 3.3E-60 7.1E-65 509.5 33.9 292 436-765 4-300 (301)
19 PRK07742 phosphate butyryltran 100.0 5.3E-60 1.1E-64 508.0 31.3 285 437-764 3-298 (299)
20 TIGR02706 P_butyryltrans phosp 100.0 8.3E-60 1.8E-64 505.4 32.2 283 438-763 2-294 (294)
21 PRK08190 bifunctional enoyl-Co 100.0 5.3E-56 1.1E-60 503.7 33.3 288 437-764 164-458 (466)
22 TIGR02709 branched_ptb branche 100.0 7.2E-56 1.6E-60 463.8 31.6 266 453-762 2-271 (271)
23 cd05311 NAD_bind_2_malic_enz N 100.0 8.9E-53 1.9E-57 435.5 22.3 222 170-406 1-226 (226)
24 PRK05331 putative phosphate ac 100.0 3.7E-48 8E-53 420.7 32.8 268 461-765 15-321 (334)
25 TIGR00182 plsX fatty acid/phos 100.0 2.9E-46 6.2E-51 403.4 32.5 263 462-765 7-308 (322)
26 COG0416 PlsX Fatty acid/phosph 100.0 4.3E-44 9.3E-49 377.9 28.4 268 461-765 15-321 (338)
27 PRK13846 putative glycerol-3-p 100.0 1.5E-43 3.3E-48 376.2 30.0 274 452-765 3-305 (316)
28 PRK13845 putative glycerol-3-p 100.0 1.7E-43 3.7E-48 384.8 30.8 275 452-765 95-420 (437)
29 PF02504 FA_synthesis: Fatty a 100.0 1E-40 2.3E-45 358.7 25.8 267 461-765 14-318 (323)
30 PF00390 malic: Malic enzyme, 100.0 6.5E-39 1.4E-43 315.8 3.7 119 39-158 17-182 (182)
31 TIGR03270 methan_mark_4 putati 100.0 4.4E-34 9.5E-39 285.9 19.5 186 549-759 10-202 (202)
32 COG4002 Predicted phosphotrans 99.6 9.5E-14 2.1E-18 137.6 17.6 193 549-763 55-254 (256)
33 cd05191 NAD_bind_amino_acid_DH 98.8 6.8E-08 1.5E-12 85.4 11.1 85 172-293 1-86 (86)
34 PRK03743 pdxA 4-hydroxythreoni 98.6 1.7E-06 3.7E-11 94.4 19.1 286 452-766 4-330 (332)
35 PRK01909 pdxA 4-hydroxythreoni 98.6 8.5E-06 1.8E-10 88.9 23.6 279 452-765 6-325 (329)
36 PRK02746 pdxA 4-hydroxythreoni 98.6 6.3E-06 1.4E-10 90.2 22.4 289 452-766 10-343 (345)
37 PRK05312 pdxA 4-hydroxythreoni 98.6 6.3E-06 1.4E-10 90.1 21.3 287 452-765 4-334 (336)
38 TIGR00557 pdxA 4-hydroxythreon 98.6 5.2E-06 1.1E-10 90.4 20.2 255 477-762 28-319 (320)
39 PF04166 PdxA: Pyridoxal phosp 98.5 1.6E-06 3.5E-11 93.5 14.3 255 475-760 6-298 (298)
40 PRK03371 pdxA 4-hydroxythreoni 98.5 5.3E-06 1.1E-10 90.4 17.2 207 533-763 92-326 (326)
41 PRK00232 pdxA 4-hydroxythreoni 98.4 7.7E-06 1.7E-10 89.4 16.3 284 452-765 5-329 (332)
42 PRK03946 pdxA 4-hydroxythreoni 97.9 0.0023 4.9E-08 69.5 23.4 270 452-766 2-307 (307)
43 TIGR02853 spore_dpaA dipicolin 97.8 0.00015 3.3E-09 78.4 12.8 146 161-316 112-263 (287)
44 cd00401 AdoHcyase S-adenosyl-L 97.8 0.00017 3.8E-09 81.5 12.1 129 160-306 161-302 (413)
45 PRK05476 S-adenosyl-L-homocyst 97.7 0.00025 5.4E-09 80.5 12.8 128 160-303 171-309 (425)
46 COG1995 PdxA Pyridoxal phospha 97.7 0.0023 5E-08 69.3 18.3 282 452-765 4-328 (332)
47 PLN02494 adenosylhomocysteinas 97.6 0.00072 1.6E-08 77.3 13.0 130 160-307 213-355 (477)
48 PRK08306 dipicolinate synthase 97.5 0.00045 9.7E-09 75.1 10.7 146 161-316 113-264 (296)
49 TIGR00936 ahcY adenosylhomocys 97.4 0.00089 1.9E-08 75.6 11.7 127 161-305 155-294 (406)
50 PF01488 Shikimate_DH: Shikima 97.4 0.00022 4.8E-09 68.4 5.9 97 191-296 9-112 (135)
51 cd05313 NAD_bind_2_Glu_DH NAD( 97.3 0.0028 6.1E-08 67.3 13.4 132 172-309 16-170 (254)
52 cd01076 NAD_bind_1_Glu_DH NAD( 97.3 0.0022 4.7E-08 67.2 11.3 121 171-296 8-140 (227)
53 PRK14192 bifunctional 5,10-met 97.2 0.002 4.3E-08 69.6 11.0 146 109-281 61-222 (283)
54 TIGR01035 hemA glutamyl-tRNA r 97.2 0.0025 5.4E-08 72.6 11.7 132 149-296 142-280 (417)
55 PTZ00075 Adenosylhomocysteinas 97.2 0.0057 1.2E-07 70.2 14.2 128 160-300 213-348 (476)
56 PRK14030 glutamate dehydrogena 97.2 0.0061 1.3E-07 69.5 14.2 119 173-295 207-346 (445)
57 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0052 1.1E-07 63.9 12.2 130 173-309 2-143 (217)
58 PRK00045 hemA glutamyl-tRNA re 97.1 0.0025 5.4E-08 72.7 10.5 115 172-296 161-283 (423)
59 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0038 8.2E-08 62.4 9.9 91 177-296 27-119 (168)
60 PLN02477 glutamate dehydrogena 97.0 0.013 2.8E-07 66.5 15.3 179 123-309 117-327 (410)
61 cd01065 NAD_bind_Shikimate_DH 96.9 0.0033 7.1E-08 60.8 8.4 135 179-324 4-146 (155)
62 PTZ00079 NADP-specific glutama 96.9 0.013 2.9E-07 66.8 14.0 180 123-308 148-368 (454)
63 cd05213 NAD_bind_Glutamyl_tRNA 96.9 0.0044 9.5E-08 67.8 9.6 173 101-296 93-276 (311)
64 PF00670 AdoHcyase_NAD: S-aden 96.8 0.012 2.6E-07 58.4 11.4 118 171-306 3-123 (162)
65 cd01075 NAD_bind_Leu_Phe_Val_D 96.8 0.01 2.3E-07 60.8 10.8 124 173-309 5-132 (200)
66 PRK14175 bifunctional 5,10-met 96.7 0.014 3E-07 63.2 12.1 157 109-294 60-231 (286)
67 COG0373 HemA Glutamyl-tRNA red 96.7 0.0051 1.1E-07 69.4 9.0 168 102-296 94-277 (414)
68 PLN00203 glutamyl-tRNA reducta 96.7 0.0064 1.4E-07 71.0 9.9 134 148-296 225-372 (519)
69 PF03807 F420_oxidored: NADP o 96.6 0.0033 7.1E-08 56.0 5.4 92 196-295 1-96 (96)
70 PRK09414 glutamate dehydrogena 96.6 0.028 6E-07 64.4 13.5 169 123-296 143-348 (445)
71 TIGR00518 alaDH alanine dehydr 96.5 0.012 2.6E-07 66.1 9.9 94 192-295 165-269 (370)
72 TIGR01809 Shik-DH-AROM shikima 96.4 0.015 3.3E-07 62.8 10.0 148 109-273 31-201 (282)
73 PRK12549 shikimate 5-dehydroge 96.2 0.0077 1.7E-07 65.2 6.0 89 179-273 112-203 (284)
74 PRK14031 glutamate dehydrogena 96.2 0.076 1.6E-06 60.8 14.0 120 123-246 139-276 (444)
75 cd01078 NAD_bind_H4MPT_DH NADP 96.1 0.026 5.7E-07 57.2 9.0 113 173-296 7-132 (194)
76 PLN02928 oxidoreductase family 96.0 0.08 1.7E-06 59.0 13.2 129 162-295 105-264 (347)
77 PRK12548 shikimate 5-dehydroge 96.0 0.019 4.1E-07 62.2 8.1 57 163-229 103-159 (289)
78 PRK14982 acyl-ACP reductase; P 96.0 0.044 9.4E-07 60.8 10.8 111 173-296 134-249 (340)
79 PRK14191 bifunctional 5,10-met 95.9 0.071 1.5E-06 57.6 11.9 148 109-282 59-221 (285)
80 PF00208 ELFV_dehydrog: Glutam 95.9 0.034 7.4E-07 58.9 9.3 125 168-296 5-151 (244)
81 PRK13940 glutamyl-tRNA reducta 95.9 0.023 5E-07 64.7 8.6 169 102-296 97-276 (414)
82 TIGR00561 pntA NAD(P) transhyd 95.9 0.076 1.6E-06 61.9 12.8 99 192-294 162-285 (511)
83 PF02826 2-Hacid_dh_C: D-isome 95.8 0.035 7.6E-07 55.7 8.6 100 183-295 25-129 (178)
84 PRK07574 formate dehydrogenase 95.5 0.15 3.3E-06 57.6 12.8 146 134-294 112-285 (385)
85 cd01079 NAD_bind_m-THF_DH NAD 95.5 0.071 1.5E-06 54.5 9.1 100 177-282 36-148 (197)
86 PF01262 AlaDh_PNT_C: Alanine 95.5 0.014 3E-07 58.0 4.0 92 192-293 18-139 (168)
87 PRK00676 hemA glutamyl-tRNA re 95.4 0.059 1.3E-06 59.6 9.1 161 101-296 90-264 (338)
88 PRK10792 bifunctional 5,10-met 95.3 0.056 1.2E-06 58.4 8.3 145 109-282 61-223 (285)
89 cd05212 NAD_bind_m-THF_DH_Cycl 95.2 0.1 2.2E-06 50.7 9.0 81 176-282 10-92 (140)
90 PRK00257 erythronate-4-phospha 95.2 0.15 3.2E-06 57.6 11.4 118 161-295 80-209 (381)
91 PRK14176 bifunctional 5,10-met 95.1 0.2 4.3E-06 54.3 11.6 144 110-282 67-228 (287)
92 PRK09424 pntA NAD(P) transhydr 94.9 0.13 2.8E-06 60.1 10.2 100 192-296 163-288 (509)
93 PRK14189 bifunctional 5,10-met 94.9 0.088 1.9E-06 57.0 8.2 144 110-282 61-222 (285)
94 PRK15438 erythronate-4-phospha 94.8 0.41 8.9E-06 54.0 13.7 116 162-294 81-208 (378)
95 PRK14194 bifunctional 5,10-met 94.8 0.095 2.1E-06 57.1 8.1 156 109-293 61-231 (301)
96 PRK12550 shikimate 5-dehydroge 94.8 0.1 2.3E-06 56.1 8.5 114 95-229 18-155 (272)
97 PRK14183 bifunctional 5,10-met 94.7 0.29 6.2E-06 52.9 11.6 144 110-282 60-221 (281)
98 PF01210 NAD_Gly3P_dh_N: NAD-d 94.6 0.055 1.2E-06 53.2 5.4 81 196-284 1-90 (157)
99 PRK14172 bifunctional 5,10-met 94.6 0.33 7.3E-06 52.4 11.7 144 110-282 61-222 (278)
100 TIGR02356 adenyl_thiF thiazole 94.6 0.059 1.3E-06 55.3 5.8 38 190-229 17-54 (202)
101 PLN00106 malate dehydrogenase 94.4 0.16 3.4E-06 56.1 9.1 115 179-298 4-140 (323)
102 PRK08605 D-lactate dehydrogena 94.4 0.43 9.4E-06 52.8 12.5 119 162-295 92-238 (332)
103 PRK13243 glyoxylate reductase; 94.4 0.39 8.4E-06 53.2 12.1 170 104-294 39-241 (333)
104 COG0686 Ald Alanine dehydrogen 94.3 0.066 1.4E-06 58.0 5.6 89 192-290 166-265 (371)
105 PRK14178 bifunctional 5,10-met 94.2 0.13 2.8E-06 55.5 7.5 82 174-281 132-215 (279)
106 COG0111 SerA Phosphoglycerate 94.2 0.61 1.3E-05 51.6 12.9 120 162-294 89-234 (324)
107 PRK00258 aroE shikimate 5-dehy 94.1 0.36 7.7E-06 52.0 10.9 136 179-327 107-254 (278)
108 PRK14179 bifunctional 5,10-met 94.1 0.41 8.9E-06 51.9 11.2 147 109-281 60-221 (284)
109 TIGR02354 thiF_fam2 thiamine b 94.1 0.089 1.9E-06 54.1 5.9 38 190-229 17-54 (200)
110 PRK14166 bifunctional 5,10-met 93.8 0.29 6.3E-06 52.9 9.3 145 109-282 58-221 (282)
111 PRK14184 bifunctional 5,10-met 93.7 0.46 9.9E-06 51.5 10.6 145 109-282 59-225 (286)
112 PF02882 THF_DHG_CYH_C: Tetrah 93.6 0.28 6.2E-06 48.7 8.1 83 174-282 16-100 (160)
113 PRK12480 D-lactate dehydrogena 93.5 0.71 1.5E-05 51.1 12.0 117 162-294 92-235 (330)
114 PRK14177 bifunctional 5,10-met 93.4 0.65 1.4E-05 50.3 11.2 148 109-282 61-223 (284)
115 PLN03139 formate dehydrogenase 93.4 1 2.2E-05 51.1 13.1 146 134-294 119-292 (386)
116 PRK12749 quinate/shikimate deh 93.3 0.16 3.4E-06 55.2 6.4 108 109-229 33-157 (288)
117 PRK15469 ghrA bifunctional gly 93.3 0.83 1.8E-05 50.2 12.0 100 190-305 132-236 (312)
118 PRK08410 2-hydroxyacid dehydro 93.2 1.2 2.5E-05 49.0 13.0 117 161-294 85-233 (311)
119 PRK14190 bifunctional 5,10-met 93.2 0.27 5.9E-06 53.2 7.9 83 174-282 138-222 (284)
120 PRK14188 bifunctional 5,10-met 93.2 0.64 1.4E-05 50.7 10.7 142 109-279 60-219 (296)
121 TIGR00507 aroE shikimate 5-deh 93.0 0.25 5.3E-06 53.0 7.2 103 110-228 27-148 (270)
122 PLN02306 hydroxypyruvate reduc 93.0 1.1 2.3E-05 50.9 12.5 124 162-294 109-273 (386)
123 PRK14027 quinate/shikimate deh 92.8 0.21 4.5E-06 54.1 6.3 57 163-229 104-160 (283)
124 PTZ00117 malate dehydrogenase; 92.7 0.35 7.6E-06 53.3 8.1 103 193-299 4-128 (319)
125 PLN02527 aspartate carbamoyltr 92.7 2.9 6.2E-05 45.9 15.1 100 161-271 117-227 (306)
126 PRK14174 bifunctional 5,10-met 92.6 1.3 2.9E-05 48.3 12.1 147 109-281 59-226 (295)
127 PLN02516 methylenetetrahydrofo 92.5 0.44 9.5E-06 52.0 8.3 147 110-282 68-231 (299)
128 PRK06487 glycerate dehydrogena 92.5 1.5 3.2E-05 48.3 12.6 114 162-294 89-234 (317)
129 TIGR02992 ectoine_eutC ectoine 92.5 0.77 1.7E-05 50.7 10.4 100 193-304 128-238 (326)
130 PRK13581 D-3-phosphoglycerate 92.4 1.2 2.7E-05 52.3 12.6 145 135-296 63-233 (526)
131 PRK07680 late competence prote 92.3 0.26 5.7E-06 52.7 6.4 94 196-297 2-100 (273)
132 PRK08762 molybdopterin biosynt 92.3 0.2 4.3E-06 56.4 5.5 38 190-229 131-168 (376)
133 PRK14170 bifunctional 5,10-met 92.2 1.4 3.1E-05 47.7 11.6 148 109-282 59-221 (284)
134 PRK14171 bifunctional 5,10-met 92.1 0.53 1.1E-05 51.1 8.3 144 110-282 61-223 (288)
135 COG0499 SAM1 S-adenosylhomocys 92.1 0.81 1.8E-05 50.7 9.6 119 167-303 185-306 (420)
136 COG0334 GdhA Glutamate dehydro 92.0 2.4 5.2E-05 48.0 13.4 169 123-296 117-316 (411)
137 PRK05600 thiamine biosynthesis 91.9 0.29 6.4E-06 55.0 6.3 40 189-230 36-75 (370)
138 PRK06932 glycerate dehydrogena 91.9 2.2 4.7E-05 47.0 12.9 115 162-294 88-234 (314)
139 PRK14181 bifunctional 5,10-met 91.9 1.7 3.8E-05 47.2 11.8 150 110-282 55-221 (287)
140 PRK14187 bifunctional 5,10-met 91.8 0.61 1.3E-05 50.8 8.4 144 110-282 61-224 (294)
141 COG0169 AroE Shikimate 5-dehyd 91.8 0.34 7.3E-06 52.5 6.3 56 163-228 101-158 (283)
142 PRK14169 bifunctional 5,10-met 91.7 2 4.4E-05 46.6 12.2 145 109-282 58-220 (282)
143 PRK11790 D-3-phosphoglycerate 91.7 1.5 3.2E-05 50.1 11.8 170 103-295 46-241 (409)
144 PRK08223 hypothetical protein; 91.7 0.44 9.4E-06 51.7 7.1 40 189-230 22-61 (287)
145 cd01487 E1_ThiF_like E1_ThiF_l 91.7 0.43 9.4E-06 47.9 6.6 32 196-229 1-32 (174)
146 TIGR00670 asp_carb_tr aspartat 91.6 4.1 9E-05 44.6 14.6 135 156-302 111-272 (301)
147 PRK07878 molybdopterin biosynt 91.4 0.29 6.2E-06 55.5 5.6 38 190-229 38-75 (392)
148 PRK14619 NAD(P)H-dependent gly 91.4 0.74 1.6E-05 50.2 8.7 75 194-294 4-83 (308)
149 PRK14193 bifunctional 5,10-met 91.3 0.69 1.5E-05 50.1 8.1 145 109-282 60-224 (284)
150 TIGR01327 PGDH D-3-phosphoglyc 91.2 2.4 5.1E-05 50.0 13.1 174 103-296 33-232 (525)
151 PRK14168 bifunctional 5,10-met 91.0 0.74 1.6E-05 50.2 8.0 88 172-282 139-229 (297)
152 PF00899 ThiF: ThiF family; I 91.0 0.26 5.7E-06 46.9 4.2 37 193-231 1-37 (135)
153 PRK14182 bifunctional 5,10-met 91.0 2 4.3E-05 46.6 11.2 147 110-282 59-221 (282)
154 PRK06223 malate dehydrogenase; 90.9 0.35 7.6E-06 52.6 5.6 97 195-301 3-127 (307)
155 PRK14185 bifunctional 5,10-met 90.9 2.8 6.1E-05 45.7 12.3 147 110-282 60-225 (293)
156 PLN02688 pyrroline-5-carboxyla 90.7 4.3 9.4E-05 43.0 13.6 91 196-296 2-98 (266)
157 PRK14618 NAD(P)H-dependent gly 90.7 0.68 1.5E-05 50.9 7.6 93 195-295 5-106 (328)
158 PRK14167 bifunctional 5,10-met 90.6 3.1 6.7E-05 45.5 12.3 151 109-282 59-225 (297)
159 PRK06436 glycerate dehydrogena 90.5 1.8 3.9E-05 47.4 10.5 92 189-297 117-213 (303)
160 PRK08293 3-hydroxybutyryl-CoA 90.4 7.5 0.00016 41.9 15.2 100 195-306 4-130 (287)
161 PRK12921 2-dehydropantoate 2-r 90.3 0.89 1.9E-05 49.0 8.0 96 196-296 2-105 (305)
162 PRK15409 bifunctional glyoxyla 90.3 1.8 4E-05 47.8 10.5 119 162-294 89-237 (323)
163 PLN02819 lysine-ketoglutarate 90.2 1 2.2E-05 56.9 9.2 94 193-286 202-327 (1042)
164 PRK05597 molybdopterin biosynt 90.2 0.48 1E-05 53.0 5.9 40 189-230 23-62 (355)
165 TIGR03140 AhpF alkyl hydropero 90.1 0.61 1.3E-05 54.6 7.0 100 122-228 134-243 (515)
166 PRK07679 pyrroline-5-carboxyla 90.0 1.2 2.6E-05 47.9 8.6 95 194-296 3-102 (279)
167 COG0345 ProC Pyrroline-5-carbo 89.9 0.84 1.8E-05 49.0 7.2 92 195-296 2-98 (266)
168 PRK14180 bifunctional 5,10-met 89.9 1.2 2.5E-05 48.4 8.2 144 110-282 60-222 (282)
169 PLN02616 tetrahydrofolate dehy 89.6 1.2 2.7E-05 49.6 8.4 148 109-282 131-295 (364)
170 COG1052 LdhA Lactate dehydroge 89.4 1.8 3.8E-05 48.0 9.4 93 187-294 139-237 (324)
171 PRK08291 ectoine utilization p 89.3 2 4.3E-05 47.5 9.8 98 194-303 132-240 (330)
172 PRK08328 hypothetical protein; 89.3 0.38 8.3E-06 50.5 4.0 39 189-229 22-60 (231)
173 PRK14173 bifunctional 5,10-met 89.2 1.4 3E-05 47.9 8.3 144 110-282 58-219 (287)
174 PRK06522 2-dehydropantoate 2-r 89.1 1.4 3E-05 47.4 8.3 89 196-296 2-103 (304)
175 PRK07634 pyrroline-5-carboxyla 89.1 1.5 3.3E-05 45.8 8.3 96 193-296 3-102 (245)
176 PRK15317 alkyl hydroperoxide r 89.0 0.82 1.8E-05 53.6 6.9 98 125-229 136-243 (517)
177 KOG0069|consensus 88.8 2.6 5.6E-05 46.7 10.1 129 173-316 121-276 (336)
178 PRK11880 pyrroline-5-carboxyla 88.6 0.95 2.1E-05 48.0 6.6 94 195-297 3-98 (267)
179 PRK08644 thiamine biosynthesis 88.5 0.48 1E-05 49.2 4.1 39 189-229 23-61 (212)
180 cd00650 LDH_MDH_like NAD-depen 88.2 0.84 1.8E-05 48.7 5.8 104 197-301 1-127 (263)
181 PRK14186 bifunctional 5,10-met 88.1 1.9 4.1E-05 47.1 8.4 83 174-282 138-222 (297)
182 TIGR01915 npdG NADPH-dependent 88.1 0.74 1.6E-05 47.7 5.2 91 196-297 2-105 (219)
183 TIGR02355 moeB molybdopterin s 87.8 0.52 1.1E-05 49.9 3.8 39 190-230 20-58 (240)
184 PTZ00325 malate dehydrogenase; 87.8 1.7 3.6E-05 48.1 7.9 105 193-301 7-133 (321)
185 PRK12475 thiamine/molybdopteri 87.7 0.57 1.2E-05 52.1 4.3 40 189-230 19-58 (338)
186 PRK00094 gpsA NAD(P)H-dependen 87.6 0.91 2E-05 49.4 5.8 90 196-296 3-108 (325)
187 cd00757 ThiF_MoeB_HesA_family 87.6 0.56 1.2E-05 49.0 3.9 39 190-230 17-55 (228)
188 PLN02897 tetrahydrofolate dehy 87.5 2 4.3E-05 47.8 8.2 148 109-282 114-278 (345)
189 PTZ00082 L-lactate dehydrogena 87.5 1.5 3.2E-05 48.5 7.3 103 194-300 6-135 (321)
190 PF00056 Ldh_1_N: lactate/mala 87.4 0.38 8.3E-06 46.6 2.4 100 195-296 1-121 (141)
191 PRK01713 ornithine carbamoyltr 87.4 8.8 0.00019 42.7 13.3 110 154-271 115-234 (334)
192 PRK06928 pyrroline-5-carboxyla 87.4 1.4 3E-05 47.4 6.9 95 195-296 2-101 (277)
193 PRK06129 3-hydroxyacyl-CoA deh 87.1 3.9 8.5E-05 44.6 10.3 32 195-229 3-34 (308)
194 cd01485 E1-1_like Ubiquitin ac 86.8 0.58 1.3E-05 47.9 3.5 39 190-230 15-53 (198)
195 TIGR00658 orni_carb_tr ornithi 86.7 10 0.00022 41.6 13.2 102 160-271 114-225 (304)
196 cd05297 GH4_alpha_glucosidase_ 86.6 0.85 1.8E-05 52.2 5.0 69 195-267 1-79 (423)
197 PRK05690 molybdopterin biosynt 86.3 0.77 1.7E-05 48.7 4.2 38 190-229 28-65 (245)
198 PF13738 Pyr_redox_3: Pyridine 86.2 0.78 1.7E-05 45.9 4.0 30 198-229 1-30 (203)
199 PF03446 NAD_binding_2: NAD bi 86.0 0.92 2E-05 44.7 4.3 101 195-307 2-108 (163)
200 PRK07502 cyclohexadienyl dehyd 85.9 1.6 3.5E-05 47.5 6.6 93 195-296 7-103 (307)
201 PRK13403 ketol-acid reductoiso 85.8 2.2 4.7E-05 47.2 7.3 83 191-287 13-100 (335)
202 cd01492 Aos1_SUMO Ubiquitin ac 85.8 0.67 1.4E-05 47.5 3.3 40 189-230 16-55 (197)
203 cd00755 YgdL_like Family of ac 85.7 0.85 1.9E-05 48.0 4.0 39 190-230 7-45 (231)
204 PRK06407 ornithine cyclodeamin 85.7 8.2 0.00018 42.2 11.8 109 193-314 116-234 (301)
205 TIGR01381 E1_like_apg7 E1-like 85.6 0.79 1.7E-05 54.7 4.1 40 190-231 334-373 (664)
206 PRK12439 NAD(P)H-dependent gly 85.5 0.91 2E-05 50.4 4.4 98 195-296 8-114 (341)
207 COG0190 FolD 5,10-methylene-te 85.5 2.3 4.9E-05 46.0 7.1 84 173-282 135-220 (283)
208 TIGR03366 HpnZ_proposed putati 85.4 6 0.00013 42.2 10.5 47 179-228 107-153 (280)
209 PF07992 Pyr_redox_2: Pyridine 85.4 1.1 2.4E-05 44.6 4.5 32 196-230 1-32 (201)
210 PRK14851 hypothetical protein; 85.2 2.3 4.9E-05 51.7 7.8 41 189-231 38-78 (679)
211 PTZ00345 glycerol-3-phosphate 85.1 1.4 3E-05 49.6 5.6 89 192-285 9-115 (365)
212 TIGR01772 MDH_euk_gproteo mala 85.1 2.1 4.5E-05 47.1 6.9 108 196-307 1-133 (312)
213 TIGR01763 MalateDH_bact malate 84.9 1.7 3.8E-05 47.5 6.2 104 195-302 2-127 (305)
214 cd05291 HicDH_like L-2-hydroxy 84.9 2.8 6.1E-05 45.8 7.8 100 196-297 2-121 (306)
215 cd01483 E1_enzyme_family Super 84.9 1.2 2.6E-05 42.8 4.3 33 196-230 1-33 (143)
216 PRK09880 L-idonate 5-dehydroge 84.8 5.2 0.00011 43.9 10.0 49 177-228 154-202 (343)
217 PRK05086 malate dehydrogenase; 84.8 2.5 5.4E-05 46.5 7.4 99 195-297 1-122 (312)
218 PRK12562 ornithine carbamoyltr 84.4 17 0.00037 40.5 13.6 113 153-271 113-234 (334)
219 PRK06476 pyrroline-5-carboxyla 84.2 2.4 5.2E-05 44.9 6.8 93 196-297 2-97 (258)
220 KOG0685|consensus 84.0 1.2 2.7E-05 51.0 4.6 36 190-227 17-52 (498)
221 KOG0029|consensus 84.0 1.2 2.7E-05 52.0 4.8 36 192-230 13-48 (501)
222 PRK06141 ornithine cyclodeamin 84.0 6 0.00013 43.5 9.9 99 193-303 124-232 (314)
223 PRK15116 sulfur acceptor prote 83.9 1.2 2.7E-05 47.9 4.3 41 190-232 26-66 (268)
224 PRK00779 ornithine carbamoyltr 83.9 29 0.00062 38.2 15.0 139 153-302 111-276 (304)
225 cd01337 MDH_glyoxysomal_mitoch 83.9 3 6.6E-05 45.8 7.5 97 196-296 2-120 (310)
226 PF01494 FAD_binding_3: FAD bi 83.8 1.1 2.4E-05 48.3 4.0 34 195-231 2-35 (356)
227 PRK09310 aroDE bifunctional 3- 83.6 1.9 4.2E-05 50.2 6.1 47 179-228 317-363 (477)
228 TIGR00872 gnd_rel 6-phosphoglu 83.6 2.4 5.1E-05 46.2 6.5 97 196-305 2-105 (298)
229 PRK07066 3-hydroxybutyryl-CoA 82.9 1.3 2.8E-05 48.9 4.2 32 195-229 8-39 (321)
230 PRK07688 thiamine/molybdopteri 82.6 1.4 3.1E-05 48.9 4.4 40 189-230 19-58 (339)
231 cd00704 MDH Malate dehydrogena 82.2 4.7 0.0001 44.6 8.2 106 195-300 1-133 (323)
232 PF00070 Pyr_redox: Pyridine n 82.1 2.2 4.9E-05 36.6 4.5 35 196-233 1-35 (80)
233 cd01339 LDH-like_MDH L-lactate 81.9 2.5 5.4E-05 46.0 5.9 98 197-301 1-123 (300)
234 TIGR01292 TRX_reduct thioredox 81.8 1.6 3.5E-05 46.2 4.4 31 196-229 2-32 (300)
235 PRK08229 2-dehydropantoate 2-r 81.8 2.4 5.2E-05 46.6 5.8 97 195-296 3-110 (341)
236 TIGR02371 ala_DH_arch alanine 81.8 10 0.00023 41.9 10.7 102 193-305 127-237 (325)
237 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.7 10 0.00022 44.6 11.1 33 194-229 5-37 (503)
238 PRK07340 ornithine cyclodeamin 81.7 6.8 0.00015 42.9 9.2 100 193-305 124-232 (304)
239 cd05296 GH4_P_beta_glucosidase 81.4 2.7 6E-05 48.1 6.2 118 195-316 1-166 (419)
240 KOG2337|consensus 81.3 1.3 2.8E-05 51.1 3.3 41 192-234 338-378 (669)
241 PRK00856 pyrB aspartate carbam 81.1 24 0.00052 38.8 13.1 96 161-271 122-222 (305)
242 PLN02342 ornithine carbamoyltr 81.1 35 0.00076 38.3 14.5 97 161-271 161-268 (348)
243 PRK06153 hypothetical protein; 80.7 1.5 3.2E-05 49.5 3.6 39 189-229 171-209 (393)
244 PRK12491 pyrroline-5-carboxyla 80.7 3.3 7.2E-05 44.6 6.2 92 195-295 3-99 (272)
245 PRK06823 ornithine cyclodeamin 80.7 14 0.00029 40.9 11.1 102 193-305 127-237 (315)
246 COG0240 GpsA Glycerol-3-phosph 80.6 2.6 5.6E-05 46.6 5.4 90 195-293 2-105 (329)
247 PF07991 IlvN: Acetohydroxy ac 80.5 3.6 7.9E-05 41.0 5.8 64 192-267 2-65 (165)
248 COG0565 LasT rRNA methylase [T 80.5 4.9 0.00011 42.6 7.1 68 193-271 3-81 (242)
249 PRK03515 ornithine carbamoyltr 80.2 16 0.00034 40.8 11.4 112 154-271 114-234 (336)
250 PF13450 NAD_binding_8: NAD(P) 80.0 2.2 4.7E-05 36.0 3.6 29 199-230 1-29 (68)
251 PRK08374 homoserine dehydrogen 79.9 4.9 0.00011 44.6 7.4 95 195-290 3-120 (336)
252 PF10727 Rossmann-like: Rossma 79.9 2.4 5.1E-05 40.6 4.2 88 193-294 9-105 (127)
253 TIGR02028 ChlP geranylgeranyl 79.6 2.1 4.5E-05 48.4 4.5 31 196-229 2-32 (398)
254 PRK00066 ldh L-lactate dehydro 79.5 4.6 9.9E-05 44.5 6.9 104 195-301 7-130 (315)
255 PRK06184 hypothetical protein; 79.5 2.2 4.8E-05 49.6 4.8 47 193-242 2-49 (502)
256 PRK07236 hypothetical protein; 79.3 2.5 5.5E-05 47.2 5.0 35 192-229 4-38 (386)
257 PRK07411 hypothetical protein; 79.3 1.7 3.7E-05 49.3 3.6 39 189-229 33-71 (390)
258 TIGR02023 BchP-ChlP geranylger 79.3 2.2 4.7E-05 47.9 4.5 31 196-229 2-32 (388)
259 PRK06249 2-dehydropantoate 2-r 79.2 3.2 6.9E-05 45.4 5.6 100 191-296 2-109 (313)
260 PTZ00188 adrenodoxin reductase 79.2 7.2 0.00016 45.6 8.6 40 193-235 38-82 (506)
261 PRK04284 ornithine carbamoyltr 79.0 32 0.00069 38.3 13.3 113 153-271 113-233 (332)
262 cd05197 GH4_glycoside_hydrolas 79.0 2.9 6.2E-05 48.0 5.3 115 195-316 1-166 (425)
263 PRK02102 ornithine carbamoyltr 79.0 36 0.00078 37.9 13.7 109 154-271 115-233 (331)
264 PRK07877 hypothetical protein; 78.7 3.5 7.7E-05 50.3 6.2 100 190-293 103-229 (722)
265 PRK05479 ketol-acid reductoiso 78.7 4.8 0.0001 44.7 6.8 86 191-289 14-104 (330)
266 PRK06847 hypothetical protein; 78.7 2.6 5.6E-05 46.6 4.8 33 194-229 4-36 (375)
267 PLN02172 flavin-containing mon 78.6 2.4 5.3E-05 49.1 4.7 36 191-229 7-42 (461)
268 TIGR03376 glycerol3P_DH glycer 78.3 3.2 7E-05 46.3 5.3 88 196-284 1-103 (342)
269 COG0644 FixC Dehydrogenases (f 78.3 2.4 5.1E-05 47.9 4.4 35 194-231 3-37 (396)
270 PRK08163 salicylate hydroxylas 78.1 2.6 5.7E-05 47.0 4.7 33 194-229 4-36 (396)
271 TIGR00465 ilvC ketol-acid redu 78.1 6.3 0.00014 43.4 7.5 67 192-271 1-67 (314)
272 COG3380 Predicted NAD/FAD-depe 78.1 2.4 5.3E-05 45.6 4.0 31 196-229 3-33 (331)
273 PRK04176 ribulose-1,5-biphosph 77.8 2.5 5.5E-05 45.0 4.2 34 193-229 24-57 (257)
274 PRK09754 phenylpropionate diox 77.7 2.9 6.3E-05 47.1 4.9 37 193-230 2-38 (396)
275 PRK09126 hypothetical protein; 77.6 2.7 5.9E-05 46.8 4.6 33 194-229 3-35 (392)
276 cd01336 MDH_cytoplasmic_cytoso 77.6 10 0.00022 42.0 8.9 105 195-300 3-135 (325)
277 PF02737 3HCDH_N: 3-hydroxyacy 77.4 2.9 6.4E-05 42.1 4.3 31 196-229 1-31 (180)
278 cd01486 Apg7 Apg7 is an E1-lik 77.4 2.7 5.9E-05 46.0 4.3 33 196-230 1-33 (307)
279 PRK05442 malate dehydrogenase; 77.4 6.6 0.00014 43.5 7.4 103 195-297 5-134 (326)
280 COG0569 TrkA K+ transport syst 77.4 1.4 3.1E-05 46.1 2.1 67 195-271 1-75 (225)
281 cd01491 Ube1_repeat1 Ubiquitin 77.3 2.2 4.9E-05 46.3 3.6 38 190-229 15-52 (286)
282 PRK06130 3-hydroxybutyryl-CoA 77.2 3.3 7.2E-05 45.0 5.0 79 195-284 5-102 (311)
283 COG2084 MmsB 3-hydroxyisobutyr 76.5 7.1 0.00015 42.5 7.2 96 195-305 1-107 (286)
284 PF01946 Thi4: Thi4 family; PD 76.4 3.1 6.6E-05 43.6 4.1 34 193-229 16-49 (230)
285 cd01484 E1-2_like Ubiquitin ac 76.2 3.2 6.9E-05 43.9 4.3 33 196-230 1-33 (234)
286 PRK06475 salicylate hydroxylas 76.1 2.9 6.3E-05 47.0 4.3 32 195-229 3-34 (400)
287 TIGR01759 MalateDH-SF1 malate 76.0 6.3 0.00014 43.6 6.7 102 195-297 4-133 (323)
288 PF00185 OTCace: Aspartate/orn 75.9 6.3 0.00014 38.9 6.1 77 193-272 1-83 (158)
289 PLN02520 bifunctional 3-dehydr 75.8 5 0.00011 47.4 6.3 37 189-228 374-410 (529)
290 PRK06567 putative bifunctional 75.7 8.3 0.00018 48.6 8.3 37 190-229 379-415 (1028)
291 COG2072 TrkA Predicted flavopr 75.6 3.3 7.2E-05 47.7 4.6 36 193-230 7-42 (443)
292 PRK02255 putrescine carbamoylt 75.0 35 0.00077 38.1 12.3 103 161-271 118-231 (338)
293 cd01488 Uba3_RUB Ubiquitin act 74.7 3.6 7.8E-05 44.9 4.4 33 196-230 1-33 (291)
294 PRK07364 2-octaprenyl-6-methox 74.7 3 6.5E-05 46.9 3.9 33 194-229 18-50 (415)
295 PRK06753 hypothetical protein; 74.6 3.7 7.9E-05 45.5 4.6 31 196-229 2-32 (373)
296 PRK05732 2-octaprenyl-6-methox 74.6 3.3 7.1E-05 46.1 4.2 34 193-229 2-38 (395)
297 PRK06719 precorrin-2 dehydroge 74.5 4.5 9.7E-05 40.0 4.6 35 191-228 10-44 (157)
298 TIGR00292 thiazole biosynthesi 74.3 3.7 8.1E-05 43.7 4.3 35 193-230 20-54 (254)
299 PRK06046 alanine dehydrogenase 74.2 24 0.00053 38.9 10.8 100 193-305 128-238 (326)
300 COG0654 UbiH 2-polyprenyl-6-me 73.7 4 8.6E-05 45.8 4.6 46 194-242 2-49 (387)
301 PRK08849 2-octaprenyl-3-methyl 73.6 4.2 9.2E-05 45.5 4.8 33 194-229 3-35 (384)
302 PRK11730 fadB multifunctional 73.5 18 0.00039 44.4 10.4 32 195-229 314-345 (715)
303 PRK07417 arogenate dehydrogena 73.4 5.6 0.00012 42.7 5.5 77 196-284 2-78 (279)
304 PRK12771 putative glutamate sy 73.3 5.8 0.00012 47.1 6.0 35 192-229 135-169 (564)
305 PRK12769 putative oxidoreducta 73.2 4 8.7E-05 49.3 4.8 35 192-229 325-359 (654)
306 PRK12409 D-amino acid dehydrog 73.1 4.2 9E-05 45.8 4.6 33 195-230 2-34 (410)
307 PLN00093 geranylgeranyl diphos 73.0 4 8.7E-05 47.2 4.5 32 195-229 40-71 (450)
308 PF01266 DAO: FAD dependent ox 72.9 4 8.7E-05 44.0 4.3 31 196-229 1-31 (358)
309 TIGR01470 cysG_Nterm siroheme 72.9 4.9 0.00011 41.5 4.7 36 191-229 6-41 (205)
310 TIGR01316 gltA glutamate synth 72.9 4.9 0.00011 46.3 5.2 36 191-229 130-165 (449)
311 PRK07531 bifunctional 3-hydrox 72.9 24 0.00052 41.4 10.9 142 195-360 5-172 (495)
312 PRK07233 hypothetical protein; 72.8 3.8 8.2E-05 46.0 4.2 31 196-229 1-31 (434)
313 PRK07045 putative monooxygenas 72.7 4.2 9.2E-05 45.4 4.5 32 195-229 6-37 (388)
314 PRK08618 ornithine cyclodeamin 72.7 25 0.00055 38.8 10.5 97 193-302 126-233 (325)
315 TIGR02032 GG-red-SF geranylger 72.6 4.1 8.9E-05 42.8 4.2 32 196-230 2-33 (295)
316 cd08281 liver_ADH_like1 Zinc-d 72.5 24 0.00051 39.2 10.4 34 193-228 191-224 (371)
317 cd08239 THR_DH_like L-threonin 72.4 14 0.00031 40.1 8.5 49 177-228 148-196 (339)
318 PRK12779 putative bifunctional 72.4 4.5 9.8E-05 51.1 5.0 41 192-235 304-348 (944)
319 cd08255 2-desacetyl-2-hydroxye 72.3 23 0.0005 37.1 9.7 97 184-295 89-192 (277)
320 PF02056 Glyco_hydro_4: Family 72.1 1.6 3.5E-05 44.4 0.9 69 196-268 1-79 (183)
321 cd08231 MDR_TM0436_like Hypoth 72.0 17 0.00036 40.0 8.9 51 176-228 160-210 (361)
322 PRK12810 gltD glutamate syntha 72.0 5 0.00011 46.5 5.0 34 193-229 142-175 (471)
323 PRK06718 precorrin-2 dehydroge 71.8 5.6 0.00012 40.9 4.8 35 191-228 7-41 (202)
324 PRK07588 hypothetical protein; 71.7 4.7 0.0001 45.1 4.6 32 195-229 1-32 (391)
325 KOG1370|consensus 71.7 9.2 0.0002 41.8 6.4 127 136-295 175-303 (434)
326 PRK01438 murD UDP-N-acetylmura 71.6 5.3 0.00011 46.3 5.1 40 187-229 9-48 (480)
327 PRK10157 putative oxidoreducta 71.6 4.3 9.3E-05 46.4 4.3 32 195-229 6-37 (428)
328 PRK08013 oxidoreductase; Provi 71.4 4.3 9.4E-05 45.7 4.2 33 194-229 3-35 (400)
329 PRK14806 bifunctional cyclohex 71.3 8.7 0.00019 47.1 7.1 81 195-284 4-84 (735)
330 PRK13512 coenzyme A disulfide 71.3 4.9 0.00011 46.1 4.7 33 196-229 3-35 (438)
331 PRK08773 2-octaprenyl-3-methyl 71.3 4 8.8E-05 45.6 3.9 34 194-230 6-39 (392)
332 PLN02852 ferredoxin-NADP+ redu 71.2 4.3 9.3E-05 47.5 4.2 39 188-229 20-60 (491)
333 TIGR01790 carotene-cycl lycope 71.1 4.4 9.6E-05 45.1 4.2 31 197-230 2-32 (388)
334 PRK11891 aspartate carbamoyltr 71.1 35 0.00075 39.4 11.3 108 154-271 196-317 (429)
335 COG2085 Predicted dinucleotide 70.8 17 0.00037 37.8 7.9 77 195-282 2-79 (211)
336 COG0078 ArgF Ornithine carbamo 70.7 39 0.00085 37.1 10.9 180 127-350 90-283 (310)
337 PRK07538 hypothetical protein; 70.7 4.9 0.00011 45.5 4.4 31 196-229 2-32 (413)
338 TIGR03603 cyclo_dehy_ocin bact 70.6 11 0.00023 41.7 7.0 137 128-291 23-184 (318)
339 PRK09599 6-phosphogluconate de 70.6 19 0.00041 39.1 8.8 95 196-302 2-103 (301)
340 cd05292 LDH_2 A subgroup of L- 70.5 7.1 0.00015 42.8 5.5 33 196-229 2-34 (308)
341 PRK08244 hypothetical protein; 70.3 4.9 0.00011 46.6 4.5 32 195-229 3-34 (493)
342 TIGR03316 ygeW probable carbam 70.3 56 0.0012 36.8 12.5 103 162-271 135-254 (357)
343 PRK08243 4-hydroxybenzoate 3-m 70.3 5.4 0.00012 44.8 4.6 34 194-230 2-35 (392)
344 PF00743 FMO-like: Flavin-bind 70.3 4.4 9.6E-05 47.9 4.1 32 195-229 2-33 (531)
345 PRK06834 hypothetical protein; 70.1 5.6 0.00012 46.4 4.9 35 193-230 2-36 (488)
346 PRK09564 coenzyme A disulfide 70.1 5.2 0.00011 45.6 4.6 37 195-232 1-37 (444)
347 PRK09853 putative selenate red 70.1 5 0.00011 50.8 4.6 35 192-229 537-571 (1019)
348 TIGR01988 Ubi-OHases Ubiquinon 70.0 4.5 9.7E-05 44.6 3.9 31 197-230 2-32 (385)
349 cd05294 LDH-like_MDH_nadp A la 70.0 17 0.00036 39.9 8.3 103 195-300 1-128 (309)
350 PRK06185 hypothetical protein; 70.0 5.2 0.00011 44.9 4.5 35 193-230 5-39 (407)
351 PRK07608 ubiquinone biosynthes 69.9 4.7 0.0001 44.8 4.1 32 195-229 6-37 (388)
352 PRK08192 aspartate carbamoyltr 69.8 45 0.00098 37.2 11.6 100 161-270 121-234 (338)
353 PF02423 OCD_Mu_crystall: Orni 69.7 29 0.00062 38.2 10.0 101 194-306 128-240 (313)
354 TIGR01984 UbiH 2-polyprenyl-6- 69.7 4.4 9.5E-05 45.0 3.7 30 197-229 2-32 (382)
355 PLN02602 lactate dehydrogenase 69.6 9.9 0.00021 42.6 6.5 103 195-301 38-162 (350)
356 TIGR03315 Se_ygfK putative sel 69.6 5 0.00011 50.8 4.5 34 193-229 536-569 (1012)
357 COG3349 Uncharacterized conser 69.6 5 0.00011 46.6 4.2 31 195-228 1-31 (485)
358 PF05834 Lycopene_cycl: Lycope 69.6 4.2 9E-05 45.6 3.5 32 197-231 2-35 (374)
359 PRK11883 protoporphyrinogen ox 69.5 5.5 0.00012 45.1 4.6 34 195-229 1-34 (451)
360 COG1893 ApbA Ketopantoate redu 69.5 11 0.00024 41.3 6.8 93 195-296 1-104 (307)
361 PRK05868 hypothetical protein; 69.4 5.9 0.00013 44.3 4.7 32 195-229 2-33 (372)
362 PRK05749 3-deoxy-D-manno-octul 69.3 14 0.00029 41.9 7.7 87 180-290 248-349 (425)
363 PRK12831 putative oxidoreducta 69.3 5.7 0.00012 46.0 4.7 35 192-229 138-172 (464)
364 cd05293 LDH_1 A subgroup of L- 69.2 14 0.00031 40.7 7.5 99 195-297 4-124 (312)
365 TIGR02360 pbenz_hydroxyl 4-hyd 69.2 6 0.00013 44.5 4.7 32 195-229 3-34 (390)
366 PRK08020 ubiF 2-octaprenyl-3-m 68.9 5 0.00011 44.8 4.0 33 194-229 5-37 (391)
367 PRK11199 tyrA bifunctional cho 68.7 12 0.00026 42.3 6.9 76 193-294 97-176 (374)
368 PRK07251 pyridine nucleotide-d 68.6 5.7 0.00012 45.4 4.4 34 194-230 3-36 (438)
369 cd01489 Uba2_SUMO Ubiquitin ac 68.5 5.7 0.00012 43.8 4.2 33 196-230 1-33 (312)
370 COG2423 Predicted ornithine cy 68.4 47 0.001 37.0 11.3 128 178-325 116-254 (330)
371 PRK08850 2-octaprenyl-6-methox 68.3 5.6 0.00012 44.8 4.3 33 194-229 4-36 (405)
372 COG0578 GlpA Glycerol-3-phosph 68.2 12 0.00026 44.2 6.9 106 192-341 10-122 (532)
373 KOG2304|consensus 68.1 5.2 0.00011 42.0 3.5 33 194-229 11-43 (298)
374 PRK09496 trkA potassium transp 68.1 11 0.00023 43.1 6.5 89 196-294 2-100 (453)
375 PLN02463 lycopene beta cyclase 68.0 5.7 0.00012 45.9 4.3 32 195-229 29-60 (447)
376 TIGR03169 Nterm_to_SelD pyridi 68.0 4.8 0.0001 44.5 3.6 37 196-232 1-37 (364)
377 PRK11749 dihydropyrimidine deh 67.9 6 0.00013 45.5 4.5 35 192-229 138-172 (457)
378 PLN02927 antheraxanthin epoxid 67.9 5.1 0.00011 48.6 4.0 36 191-229 78-113 (668)
379 PLN02676 polyamine oxidase 67.8 13 0.00028 43.5 7.2 38 193-232 25-62 (487)
380 COG1179 Dinucleotide-utilizing 67.8 5 0.00011 42.5 3.4 41 191-233 27-67 (263)
381 PRK05714 2-octaprenyl-3-methyl 67.6 5 0.00011 45.1 3.7 32 195-229 3-34 (405)
382 PRK12778 putative bifunctional 67.6 6.6 0.00014 48.3 5.0 36 191-229 428-463 (752)
383 COG1250 FadB 3-hydroxyacyl-CoA 67.6 18 0.00039 39.9 7.7 32 195-229 4-35 (307)
384 PRK07494 2-octaprenyl-6-methox 67.5 5.8 0.00013 44.2 4.2 34 194-230 7-40 (388)
385 PRK08294 phenol 2-monooxygenas 67.4 5.4 0.00012 48.1 4.1 47 193-242 31-79 (634)
386 PRK11259 solA N-methyltryptoph 67.4 6.3 0.00014 43.5 4.4 34 194-230 3-36 (376)
387 PRK10015 oxidoreductase; Provi 67.4 5.9 0.00013 45.4 4.2 32 195-229 6-37 (429)
388 PRK07190 hypothetical protein; 67.4 6.7 0.00015 45.8 4.8 34 194-230 5-38 (487)
389 cd08240 6_hydroxyhexanoate_dh_ 67.3 36 0.00079 37.1 10.3 105 181-294 163-275 (350)
390 PRK12490 6-phosphogluconate de 67.3 23 0.00051 38.4 8.7 95 196-302 2-103 (299)
391 PRK06545 prephenate dehydrogen 67.2 11 0.00025 42.0 6.4 78 195-284 1-81 (359)
392 PRK08132 FAD-dependent oxidore 67.2 6.2 0.00013 46.5 4.5 34 193-229 22-55 (547)
393 PRK10262 thioredoxin reductase 67.2 6.3 0.00014 42.8 4.3 32 193-227 5-36 (321)
394 cd08233 butanediol_DH_like (2R 67.1 36 0.00079 37.2 10.3 45 181-228 161-205 (351)
395 PF13454 NAD_binding_9: FAD-NA 67.0 6.4 0.00014 38.5 3.8 34 198-231 1-36 (156)
396 cd05290 LDH_3 A subgroup of L- 66.8 9.8 0.00021 41.8 5.6 103 196-301 1-127 (307)
397 PRK06416 dihydrolipoamide dehy 66.7 6.9 0.00015 45.0 4.7 33 195-230 5-37 (462)
398 PRK06126 hypothetical protein; 66.6 7.3 0.00016 45.8 5.0 36 192-230 5-40 (545)
399 PRK09260 3-hydroxybutyryl-CoA 66.6 7.5 0.00016 41.9 4.6 32 195-229 2-33 (288)
400 PRK14106 murD UDP-N-acetylmura 66.6 7.2 0.00016 44.6 4.8 36 191-229 2-37 (450)
401 PRK15076 alpha-galactosidase; 66.5 21 0.00046 41.1 8.5 69 195-267 2-80 (431)
402 TIGR01377 soxA_mon sarcosine o 66.4 6.6 0.00014 43.4 4.3 33 196-231 2-34 (380)
403 TIGR03219 salicylate_mono sali 65.8 7.1 0.00015 44.1 4.5 32 195-229 1-33 (414)
404 PRK05225 ketol-acid reductoiso 65.8 8.6 0.00019 44.4 5.0 89 190-285 32-123 (487)
405 COG5322 Predicted dehydrogenas 65.4 9.6 0.00021 41.0 4.9 53 166-218 139-192 (351)
406 COG0039 Mdh Malate/lactate deh 65.2 15 0.00032 40.6 6.5 100 195-297 1-122 (313)
407 COG1748 LYS9 Saccharopine dehy 65.0 18 0.00039 41.1 7.3 112 195-316 2-124 (389)
408 PRK12814 putative NADPH-depend 65.0 7.8 0.00017 46.9 4.9 34 193-229 192-225 (652)
409 TIGR02437 FadB fatty oxidation 65.0 39 0.00084 41.6 10.8 32 195-229 314-345 (714)
410 PF03486 HI0933_like: HI0933-l 64.9 6.8 0.00015 44.8 4.1 31 196-229 2-32 (409)
411 PF13241 NAD_binding_7: Putati 64.9 5 0.00011 36.5 2.5 37 191-230 4-40 (103)
412 PRK06617 2-octaprenyl-6-methox 64.8 7 0.00015 43.6 4.1 32 195-229 2-33 (374)
413 PLN02268 probable polyamine ox 64.7 6.9 0.00015 44.4 4.1 31 196-229 2-32 (435)
414 PRK14694 putative mercuric red 64.7 8.4 0.00018 44.5 4.9 34 193-229 5-38 (468)
415 TIGR01758 MDH_euk_cyt malate d 64.7 25 0.00055 38.9 8.4 102 196-297 1-129 (324)
416 PRK12770 putative glutamate sy 64.5 9.9 0.00022 42.1 5.2 34 193-229 17-50 (352)
417 PTZ00245 ubiquitin activating 64.5 6.6 0.00014 42.1 3.5 40 189-230 21-60 (287)
418 TIGR03143 AhpF_homolog putativ 64.4 7.7 0.00017 46.0 4.6 32 196-230 6-37 (555)
419 TIGR00031 UDP-GALP_mutase UDP- 64.4 7.7 0.00017 43.9 4.4 31 196-229 3-33 (377)
420 PRK04523 N-acetylornithine car 64.3 53 0.0011 36.7 10.8 112 151-271 126-253 (335)
421 PRK06035 3-hydroxyacyl-CoA deh 64.2 8.4 0.00018 41.6 4.5 32 195-229 4-35 (291)
422 PRK07333 2-octaprenyl-6-methox 64.2 6.2 0.00013 44.1 3.6 31 196-229 3-35 (403)
423 PRK12266 glpD glycerol-3-phosp 64.1 7.6 0.00016 45.5 4.4 34 195-231 7-40 (508)
424 TIGR03364 HpnW_proposed FAD de 64.0 7.7 0.00017 42.8 4.2 32 196-230 2-33 (365)
425 PRK06183 mhpA 3-(3-hydroxyphen 64.0 7.9 0.00017 45.6 4.5 35 193-230 9-43 (538)
426 PRK01747 mnmC bifunctional tRN 63.9 8 0.00017 46.9 4.6 34 195-231 261-294 (662)
427 TIGR01317 GOGAT_sm_gam glutama 63.8 8.4 0.00018 44.9 4.7 34 193-229 142-175 (485)
428 PRK08507 prephenate dehydrogen 63.8 25 0.00055 37.5 8.0 88 196-294 2-92 (275)
429 PRK11728 hydroxyglutarate oxid 63.8 7.4 0.00016 43.6 4.1 32 195-229 3-36 (393)
430 PRK14804 ornithine carbamoyltr 63.7 52 0.0011 36.3 10.5 101 162-271 119-227 (311)
431 PRK04690 murD UDP-N-acetylmura 63.7 8.1 0.00018 44.8 4.5 35 192-229 6-40 (468)
432 COG1712 Predicted dinucleotide 63.7 15 0.00033 38.6 5.9 77 196-282 2-80 (255)
433 TIGR01505 tartro_sem_red 2-hyd 63.6 15 0.00032 39.6 6.3 91 196-298 1-98 (291)
434 PF10941 DUF2620: Protein of u 63.4 29 0.00062 32.7 7.0 61 484-584 10-71 (117)
435 PRK06912 acoL dihydrolipoamide 63.4 8.4 0.00018 44.4 4.5 31 196-229 2-32 (458)
436 cd08230 glucose_DH Glucose deh 63.3 51 0.0011 36.2 10.6 35 192-229 171-205 (355)
437 PF12434 Malate_DH: Malate deh 63.2 6.4 0.00014 27.4 2.1 21 3-23 8-28 (28)
438 PRK08010 pyridine nucleotide-d 63.0 8.8 0.00019 43.9 4.6 32 195-229 4-35 (441)
439 COG1486 CelF Alpha-galactosida 63.0 6.7 0.00015 45.0 3.5 70 193-266 2-81 (442)
440 TIGR01318 gltD_gamma_fam gluta 62.9 9.7 0.00021 44.1 4.9 35 192-229 139-173 (467)
441 PTZ00318 NADH dehydrogenase-li 62.8 7.3 0.00016 44.4 3.8 37 191-230 7-43 (424)
442 PRK08655 prephenate dehydrogen 62.7 19 0.00041 41.5 7.2 84 196-294 2-93 (437)
443 cd08269 Zn_ADH9 Alcohol dehydr 62.7 67 0.0015 34.0 11.1 48 178-228 115-162 (312)
444 cd01490 Ube1_repeat2 Ubiquitin 62.6 8.6 0.00019 44.3 4.3 34 196-229 1-37 (435)
445 COG0665 DadA Glycine/D-amino a 62.4 9.9 0.00021 42.0 4.7 37 193-232 3-39 (387)
446 PRK12809 putative oxidoreducta 62.2 10 0.00022 45.8 5.1 36 192-230 308-343 (639)
447 PRK00141 murD UDP-N-acetylmura 62.1 9.4 0.0002 44.3 4.6 35 192-229 13-47 (473)
448 PF12831 FAD_oxidored: FAD dep 62.0 9.3 0.0002 43.7 4.5 33 197-232 2-34 (428)
449 PRK07530 3-hydroxybutyryl-CoA 61.9 9.9 0.00022 41.0 4.5 32 195-229 5-36 (292)
450 COG1063 Tdh Threonine dehydrog 61.9 14 0.0003 41.2 5.7 58 168-228 143-201 (350)
451 PRK07819 3-hydroxybutyryl-CoA 61.9 9.5 0.00021 41.3 4.3 32 195-229 6-37 (286)
452 TIGR02053 MerA mercuric reduct 61.8 9.1 0.0002 44.0 4.5 30 197-229 3-32 (463)
453 PRK12775 putative trifunctiona 61.5 9.3 0.0002 48.7 4.8 34 193-229 429-462 (1006)
454 cd08278 benzyl_alcohol_DH Benz 61.4 60 0.0013 35.9 10.7 89 193-295 186-287 (365)
455 cd01338 MDH_choloroplast_like 61.3 21 0.00046 39.4 7.0 102 195-297 3-132 (322)
456 TIGR01350 lipoamide_DH dihydro 61.2 9.1 0.0002 43.9 4.3 31 196-229 3-33 (461)
457 PRK00711 D-amino acid dehydrog 61.1 9.6 0.00021 42.8 4.4 31 196-229 2-32 (416)
458 KOG2018|consensus 61.1 9.3 0.0002 41.8 3.9 40 190-231 70-109 (430)
459 PRK05976 dihydrolipoamide dehy 60.8 10 0.00022 43.9 4.5 33 194-229 4-36 (472)
460 TIGR01202 bchC 2-desacetyl-2-h 60.7 58 0.0013 35.2 10.2 44 181-228 134-177 (308)
461 PRK07208 hypothetical protein; 60.2 11 0.00023 43.5 4.7 34 193-229 3-36 (479)
462 TIGR02733 desat_CrtD C-3',4' d 60.2 11 0.00024 43.7 4.7 34 194-230 1-34 (492)
463 PRK03369 murD UDP-N-acetylmura 60.1 32 0.00068 40.2 8.5 35 192-229 10-44 (488)
464 PRK11445 putative oxidoreducta 60.1 9.7 0.00021 42.2 4.1 33 599-631 264-296 (351)
465 PRK11101 glpA sn-glycerol-3-ph 60.0 9.9 0.00021 45.0 4.4 34 194-230 6-39 (546)
466 cd08293 PTGR2 Prostaglandin re 59.9 54 0.0012 35.5 9.9 32 195-228 156-188 (345)
467 PRK13369 glycerol-3-phosphate 59.8 10 0.00022 44.3 4.5 34 195-231 7-40 (502)
468 PRK06292 dihydrolipoamide dehy 59.7 11 0.00024 43.2 4.6 33 194-229 3-35 (460)
469 TIGR00137 gid_trmFO tRNA:m(5)U 59.6 10 0.00022 43.7 4.3 32 196-230 2-33 (433)
470 PRK15461 NADH-dependent gamma- 59.6 16 0.00035 39.6 5.7 93 196-301 3-103 (296)
471 KOG2250|consensus 59.6 1.2E+02 0.0025 35.5 12.4 153 140-296 181-370 (514)
472 PRK05335 tRNA (uracil-5-)-meth 59.5 11 0.00023 43.5 4.4 34 195-231 3-36 (436)
473 KOG1495|consensus 59.5 11 0.00024 40.6 4.1 40 189-229 15-54 (332)
474 TIGR01789 lycopene_cycl lycope 59.4 11 0.00025 42.2 4.6 34 197-233 2-37 (370)
475 PRK04965 NADH:flavorubredoxin 59.2 13 0.00027 41.6 4.9 41 195-236 3-43 (377)
476 cd01493 APPBP1_RUB Ubiquitin a 59.2 8.5 0.00018 44.3 3.5 39 190-230 16-54 (425)
477 PRK10886 DnaA initiator-associ 59.1 28 0.00062 35.7 7.0 84 192-284 39-130 (196)
478 PRK09496 trkA potassium transp 59.1 6 0.00013 45.2 2.3 37 190-229 227-263 (453)
479 COG3288 PntA NAD/NADP transhyd 59.0 36 0.00078 37.5 7.9 111 188-303 158-294 (356)
480 PLN02985 squalene monooxygenas 58.9 12 0.00026 44.0 4.8 34 193-229 42-75 (514)
481 PRK06270 homoserine dehydrogen 58.9 56 0.0012 36.4 9.9 95 195-290 3-123 (341)
482 cd08296 CAD_like Cinnamyl alco 58.6 69 0.0015 34.7 10.4 43 182-228 153-195 (333)
483 TIGR01373 soxB sarcosine oxida 58.4 12 0.00025 42.1 4.5 36 193-230 29-65 (407)
484 COG0476 ThiF Dinucleotide-util 58.4 8.8 0.00019 40.6 3.3 39 189-229 25-63 (254)
485 PTZ00431 pyrroline carboxylate 58.1 16 0.00034 39.0 5.1 90 192-297 1-94 (260)
486 TIGR01421 gluta_reduc_1 glutat 57.7 12 0.00027 43.0 4.6 32 195-229 3-34 (450)
487 PRK13984 putative oxidoreducta 57.4 12 0.00027 44.7 4.7 34 193-229 282-315 (604)
488 PRK08274 tricarballylate dehyd 57.4 12 0.00026 43.0 4.5 35 193-230 3-37 (466)
489 PTZ00367 squalene epoxidase; P 57.3 23 0.00051 42.3 6.9 41 187-230 23-66 (567)
490 PRK02472 murD UDP-N-acetylmura 57.2 14 0.00029 42.3 4.8 35 192-229 3-37 (447)
491 TIGR02440 FadJ fatty oxidation 57.2 59 0.0013 39.9 10.4 32 195-229 305-337 (699)
492 PRK07589 ornithine cyclodeamin 57.1 1.1E+02 0.0023 34.4 11.6 102 193-305 128-240 (346)
493 cd05285 sorbitol_DH Sorbitol d 56.9 81 0.0017 34.3 10.7 38 189-228 158-195 (343)
494 KOG1399|consensus 56.8 11 0.00024 43.6 4.0 27 193-219 5-31 (448)
495 PF02558 ApbA: Ketopantoate re 56.7 14 0.0003 35.4 4.1 31 197-230 1-31 (151)
496 PRK05249 soluble pyridine nucl 56.6 13 0.00027 42.8 4.4 33 194-229 5-37 (461)
497 TIGR03736 PRTRC_ThiF PRTRC sys 56.5 17 0.00036 38.8 4.9 39 193-231 10-56 (244)
498 PRK02705 murD UDP-N-acetylmura 56.5 12 0.00026 42.9 4.2 31 196-229 2-32 (459)
499 PLN02568 polyamine oxidase 56.3 13 0.00028 44.0 4.6 38 193-230 4-43 (539)
500 cd08234 threonine_DH_like L-th 56.1 87 0.0019 33.6 10.7 35 192-228 158-192 (334)
No 1
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=3.4e-205 Score=1773.20 Aligned_cols=751 Identities=60% Similarity=0.975 Sum_probs=732.0
Q ss_pred hHHHHHHhhccCCCCCcEEEeeccccCCccccceeeccchHHHHHHHhcCcccccccccCCcEEEEEecccccccCCCCC
Q psy14495 11 KSHQSALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNLVAVITNGTAVLGMGNIG 90 (766)
Q Consensus 11 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~i~YtP~v~~~c~~i~~~p~~~~~~~~~~~~v~vvtdG~~iLGlGd~G 90 (766)
++++++|+||+++.+|||++.||+|++|++||+++|||||+++|++|++||+++|+||+|||.++|||||||||||||+|
T Consensus 2 ~~~~~~l~~h~~~~~gk~~~~~~~~~~~~~dl~~~Ytpgv~~~c~~i~~~~~~~~~~t~~~n~v~vvtdg~~vLGlGd~G 81 (752)
T PRK07232 2 QLKQAALDYHRFPRPGKIEVTPTKPLATQRDLSLAYSPGVAAPCLEIAKDPADAYKYTARGNLVAVISNGTAVLGLGNIG 81 (752)
T ss_pred chHHHHHHHhcccCCCeEEEEeccccCChhhcceecCCchHHHHHHHHhChhhccccccCCcEEEEEccchhhccccccc
Confidence 45789999999966899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhHHHHhhhcCCCccccCCCCCCHHHHHHHHHHhCCCccccccccCCCCchHHHHHHHhhcCCCcEEecCC
Q psy14495 91 PLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQ 170 (766)
Q Consensus 91 ~~~~~~i~~gK~~ly~~~~gi~~l~v~~~~~~~~~~v~~v~~~~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~ 170 (766)
++|||||||||++|||+|||||++|||||++|+||||++++.+||+||+||||||++||||+||+|||++++||||||||
T Consensus 82 ~~a~~pv~egK~~l~~~~~gid~~~i~~~~~d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i~~~~~~~~~ip~f~DD~ 161 (752)
T PRK07232 82 ALASKPVMEGKGVLFKKFAGIDVFDIEVDEEDPDKFIEAVAALEPTFGGINLEDIKAPECFYIEEKLRERMDIPVFHDDQ 161 (752)
T ss_pred cccCccHHHHHHHHHHhhcCCCccccccCCCCHHHHHHHHHHhCCCccEEeeeecCCchHHHHHHHHHHhcCCCeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc
Q psy14495 171 HGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD 250 (766)
Q Consensus 171 qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~ 250 (766)
||||+|+||||+||+|++|++|+|+||||+|||+||+||++||...|++++||||||++|||+++|.++|+++|++||++
T Consensus 162 ~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~ 241 (752)
T PRK07232 162 HGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVD 241 (752)
T ss_pred chHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999998999999999999999966799999999999
Q ss_pred cCCCCHHHHhccCcEEEecCCCCCCCHHHHHhhccCcEEEeccCCCCccCHhhHhcccCcEEEEcCCCCCcccccccccc
Q psy14495 251 TTARTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCF 330 (766)
Q Consensus 251 ~~~~~L~e~i~~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~~~~~ai~atG~~~~p~Q~NN~~~F 330 (766)
++..+|+|+|++||||||+|++|+||+|||++|+++||||||||||||||||||++|++.+||||||++||||+||+|+|
T Consensus 242 ~~~~~l~~~i~~~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atGrs~~pnQ~NN~~~F 321 (752)
T PRK07232 242 TDARTLAEAIEGADVFLGLSAAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRPDAIIATGRSDYPNQVNNVLCF 321 (752)
T ss_pred CCCCCHHHHHcCCCEEEEcCCCCCCCHHHHHHhccCCEEEecCCCCccCCHHHHHHhcCCEEEEECCcCCCCcccceeec
Confidence 99999999999999999999999999999999999999999999999999999999975599999999999999999999
Q ss_pred cchhhhhhcccCCcCCHHHHHHHHHHHHhccccccchhhhhhhcccccCCCccccCCCCCChhhHhHHHHHHHHHHHHcC
Q psy14495 331 PYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSG 410 (766)
Q Consensus 331 Pgi~~g~l~~~a~~i~~~m~~aAa~aLA~l~~~~~~~~~~~~y~~~~~~~g~~~~lP~~~~~~vs~~IA~aVa~~a~~~g 410 (766)
||||||+|+++|++|||+|+++||++||++++++.|+.+..+|+.+...++++||+|++||+|+...||.+|+++|+++|
T Consensus 322 Pgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~iip~~~~~~~~~~va~av~~~a~~~g 401 (752)
T PRK07232 322 PYIFRGALDVGATTINEEMKLAAVRAIAELAREEVSDEVAAAYGGQKLSFGPEYIIPKPFDPRLIVKIAPAVAKAAMDSG 401 (752)
T ss_pred chhhHHHHHcCCccCCHHHHHHHHHHHHhhcccccchhhhhhhccccccCCCCccCCCCCChhHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHhhhhhhccccccchHHHHHHhhhccccEEEEecCCCHHHHHHHHHHHHcCCcEEEEEcCHHHHHH
Q psy14495 411 VATKPIKDIEIYTNHLQKFVYRSSAFMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQ 490 (766)
Q Consensus 411 vA~~~~~d~~~~~~~~~~~~~~s~~~m~~L~~~ak~~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~~ 490 (766)
+|+.+++|+++|.+++++++++++.+|+++++++|+.+ +||+|+||+|+++|+|+.++.++|+++|||||++++|++
T Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~~~~~m~~Li~~ak~~~---krIvfaegeD~rvL~Aa~~~~~egia~pILVGd~e~I~~ 478 (752)
T PRK07232 402 VATRPIADMDAYREKLEAFVYKTGLVMKPIFAKAKKDP---KRVVFAEGEEERVLRAAQEVVDEGLAKPILIGRPEVIEA 478 (752)
T ss_pred cccCCCCCHHHHHHHHHHHHhhhhhHHHHHHHHhhccC---CeEEEecCCCHHHHHHHHHHHHcCCeEEEEEcCHHHHHH
Confidence 99998889999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHHhcCcCCCCCCCeEEECCCCCcchhHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChH
Q psy14495 491 HIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTK 570 (766)
Q Consensus 491 ~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~ 570 (766)
.+++.+++++.+.+++|||++++..|++|++.|+++|++||+++++|++.++++|+++|++||++|+||++|||.++||+
T Consensus 479 ~l~~~gl~l~~~~~ieIIda~~~~~~~~y~~~~~~lr~rKG~t~~~A~r~~~~~s~~~Aa~mVk~GeADalVsG~~gtT~ 558 (752)
T PRK07232 479 RIKKLGLDLKAGVDFEIVNPEDDPRYEEYWQYYYELLQRKGVTPEDARRLVRRDRTVIGAMMVARGDADAMICGLTGRYH 558 (752)
T ss_pred HHHHcCCCcccCCCeEEECCCCchhHHHHHHHHHHHHhhcCCCHHHHHHHhccCcHHHHHHHHHCCCCCEEEecCCCCHH
Confidence 99999987632237999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCccceeEEEEEEeCCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeeCccCCCCC
Q psy14495 571 LHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNN 650 (766)
Q Consensus 571 ~~l~~~~~iig~~~g~~~~s~~~i~~~~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lGi~PkVAlLS~s~~gs~~ 650 (766)
++|+.+++++|++||++++|++++||++++.++|+|||+|++||++||++||+|++.++|.||++|||||||+||+||++
T Consensus 559 a~Lraa~~iiG~~~Gi~r~S~~~im~~~~~~l~~aD~GvNi~PtaeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~ 638 (752)
T PRK07232 559 EHLRPVRQVIGLRPGVHTAAAMNALLLKGGNLFIADTYVNEDPTAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSD 638 (752)
T ss_pred HHHHHHHHHhCcCCCCceeEEEEEEEcCCCCEEEEeCeecCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccc
Q psy14495 651 NISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIG 730 (766)
Q Consensus 651 ~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G 730 (766)
+|++++++||+++++++.++|+||||+|+|+|++++++++|+|+|+++|+||||||||+++|||+||++++ |+++..+|
T Consensus 639 ~k~~~~vreA~~llk~~~~~l~~dGemq~D~Al~~~va~~K~p~s~vaG~ANVLIfPdLeaGNI~yKllq~-l~g~~aiG 717 (752)
T PRK07232 639 SPSARKMREAVELLRERAPDLEVDGEMHGDAALNEEIRKDLYPFSRLKGPANVLVMPNLEAANISYNLLKE-LGGGVTIG 717 (752)
T ss_pred CCcHHHHHHHHHHHHhhCCCcEEEEechHHHhCCHHHHHhhCCCCccCCcCCEEEeCCchhhHHHHHHHHH-hcCCeEec
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cccccCCccEEecCCCCCHHHHHHHHHHHHHHHhc
Q psy14495 731 PILLGCSKPIHILTSSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 731 ~iLlGl~~PVv~~sr~~s~~~i~n~ialA~~~a~~ 765 (766)
|+|+|+++||+++||+||+++|+|++++|++++|.
T Consensus 718 piL~G~~~PV~~lSR~~s~~di~n~~Ala~~~a~~ 752 (752)
T PRK07232 718 PILLGMAKPVHILTPSATVRRIVNMTALAVVDAQT 752 (752)
T ss_pred ceeecCCCCeEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999863
No 2
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1.1e-204 Score=1765.43 Aligned_cols=751 Identities=61% Similarity=1.015 Sum_probs=729.1
Q ss_pred hHHHHHHhhccCCCCCcEEEeeccccCCccccceeeccchHHHHHHHhcCcccccccccCCcEEEEEecccccccCCCCC
Q psy14495 11 KSHQSALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNLVAVITNGTAVLGMGNIG 90 (766)
Q Consensus 11 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~i~YtP~v~~~c~~i~~~p~~~~~~~~~~~~v~vvtdG~~iLGlGd~G 90 (766)
++++++|+||+++++|||++.||+|++|++||+++|||||+++|++|++||+++|.||+|||.++|||||||||||||+|
T Consensus 6 ~~~~~~l~~h~~~~~gk~~~~~~~~~~~~~dl~l~YtPgVa~~c~~i~~~p~~~~~~t~r~n~v~VvtdG~~vLGLGdiG 85 (764)
T PRK12861 6 TQRQAALDYHEFPTPGKISVVASKPLVTQRDLALAYTPGVASACEEIAADPLNAFRFTSRGNLVGVITNGTAVLGLGNIG 85 (764)
T ss_pred hHHHHHHHHhccCCCCeEEEEeccccCChHHceeecCCchHHHHHHHHhChHhhhhhhccCcEEEEEecchhhccCCCcC
Confidence 46799999999976899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhHHHHhhhcCCCccccCCCCCCHHHHHHHHHHhCCCccccccccCCCCchHHHHHHHhhcCCCcEEecCC
Q psy14495 91 PLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQ 170 (766)
Q Consensus 91 ~~~~~~i~~gK~~ly~~~~gi~~l~v~~~~~~~~~~v~~v~~~~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~ 170 (766)
++|||||||||++|||+|||||+||||||++|+||||++|+++.|+||.||||||++||||+||+|||++++||||||||
T Consensus 86 ~~a~~pvmeGK~~L~~~~agid~~di~~~~~dpd~~v~~v~a~~~~fg~i~lED~~~p~~f~il~~~~~~~~ipvf~DD~ 165 (764)
T PRK12861 86 ALASKPVMEGKAVLFKKFAGIDVFDIEINETDPDKLVDIIAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQ 165 (764)
T ss_pred cccccchHHHHHHHHhhccCCCccccccCCCCHHHHHHHHHHHHhhcCCceeeeccCchHHHHHHHHHhcCCCCeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc
Q psy14495 171 HGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD 250 (766)
Q Consensus 171 qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~ 250 (766)
||||+|+|||++||+|++|++|+|+||||+|||+||+||+++|+++|++++|||||||+|||+++|++.|+++|++||++
T Consensus 166 qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~ 245 (764)
T PRK12861 166 HGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQE 245 (764)
T ss_pred chHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998899999999999999965699999999999
Q ss_pred cCCCCHHHHhccCcEEEecCCCCCCCHHHHHhhccCcEEEeccCCCCccCHhhHhcccCcEEEEcCCCCCcccccccccc
Q psy14495 251 TTARTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCF 330 (766)
Q Consensus 251 ~~~~~L~e~i~~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~~~~~ai~atG~~~~p~Q~NN~~~F 330 (766)
++..+|+|+|+++|||||+|++|+||+|||++|+++||||||||||||||||||++.+|++||||||++||||+||+|+|
T Consensus 246 ~~~~~L~eai~~advliG~S~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~~~~g~aivaTGrs~~pnQ~NN~l~F 325 (764)
T PRK12861 246 TDARTLAEVIGGADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPELAHATRDDVVIATGRSDYPNQVNNVLCF 325 (764)
T ss_pred cCCCCHHHHHhcCCEEEEcCCCCCCCHHHHHHhccCCEEEECCCCCccCCHHHHHhcCCCEEEEeCCcCCCCccceeeec
Confidence 99899999999999999999999999999999999999999999999999999999778999999999999999999999
Q ss_pred cchhhhhhcccCCcCCHHHHHHHHHHHHhccccccchhhhhhhcccccCCCccccCCCCCChhhHhHHHHHHHHHHHHcC
Q psy14495 331 PYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSG 410 (766)
Q Consensus 331 Pgi~~g~l~~~a~~i~~~m~~aAa~aLA~l~~~~~~~~~~~~y~~~~~~~g~~~~lP~~~~~~vs~~IA~aVa~~a~~~g 410 (766)
||||||+|+++|++|||+|+++||++||++++++.++.+..+|+.+.+.+|++|++|++++++++.+||.+|+++|+++|
T Consensus 326 Pgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~~~~~~~~~~~~~~~~~~~~~~~iiP~~~~~~v~~~VA~aVa~~a~~~G 405 (764)
T PRK12861 326 PYIFRGALDVGATTITREMEIAAVHAIAGLAEEEQNDVVAAAYGAYDVSFGPQYLIPKPFDPRLIVRIAPAVAKAAMEGG 405 (764)
T ss_pred chhhHHHHHcCCccCCHHHHHHHHHHHHhhCCcccCHHHHHhhccccccCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999877666777999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHhhhhhhccccccchHHHHHHh-----hhccccEEEEecCCCHHHHHHHHHHHHcCCcEEEEEcCH
Q psy14495 411 VATKPIKDIEIYTNHLQKFVYRSSAFMNPIFQIAKK-----ARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRT 485 (766)
Q Consensus 411 vA~~~~~d~~~~~~~~~~~~~~s~~~m~~L~~~ak~-----~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~ 485 (766)
+|+.+++|+++|+++++++++++..+|++++++||+ .+ +||+||||+|+++|+|++++.++|+++|||||++
T Consensus 406 vA~~~~~~~~~~~~~~~~~~~~~~~~~k~v~~~a~~~~~~~~~---krIvfaEgeD~rvL~Aa~~~~~egla~PILVG~~ 482 (764)
T PRK12861 406 VATRPIADLDAYVEQLQQFVYHSGAFMKPLFAAARQLVRDGGK---ARIVFTEGEDERVLRAVQVIVDEKLARPILVGRP 482 (764)
T ss_pred CCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCC---CEEEEeCCCCHHHHHHHHHHHHcCCeeEEEECCH
Confidence 999866789999999999999999999999999998 44 8999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcCCCCCCCeEEECCCCCcchhHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecc
Q psy14495 486 KILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGI 565 (766)
Q Consensus 486 ~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~ 565 (766)
++|++.++++|++++++.+++|||++++.++++||+.|+++|++||+|+++|++.++++++++|++||+.|+||++|||.
T Consensus 483 ~~I~~~a~~~gl~l~~~~~~eIIdp~~~~~~~~~~~~~~~lr~rkG~t~e~A~~~~~~~~~~~Aa~mV~~G~ADg~v~G~ 562 (764)
T PRK12861 483 EVLLARIERFGLRLRLGQDVEVTNPEYDERFPQYWTTYWELRCRDGISKEMARVEMRRRLTLIGAMMVRLGDADGMICGT 562 (764)
T ss_pred HHHHHHHHHcCCCcccCCCcEEECCCCchHHHHHHHHHHHHHhhCCCCHHHHHHHHhcChHHHHHHHHhCCCCCEEECCC
Confidence 99999999999988544579999999999999999999999999999999999999988999999999999999999999
Q ss_pred cCChHHHHHHHHHHhccCCCccceeEEEEEEeCCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeeCcc
Q psy14495 566 LGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLKPRVALLSNSN 645 (766)
Q Consensus 566 ~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~~~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lGi~PkVAlLS~s~ 645 (766)
++||.++++.+++++|+.+|+++++++++|+.+++.+||+|||+|++||+|||++|++++++++|.||++|||||||+||
T Consensus 563 ~~t~~~~l~~~~~VIg~~~G~~~~s~~~~m~~~~~~lf~tD~~vni~P~aeqla~Ia~~aa~~ak~lGiePkVAlLS~St 642 (764)
T PRK12861 563 VGEYHNHLRFVDEVIGRKPGASTYAAMNILLLDQRTVALVDTHVNDNPDAEQIAEFTIAAARQMEWLNLTPKVALLSRSN 642 (764)
T ss_pred CCCcHHHHHHHHHHhCcCCCCcceeEEEEEEecCceEEEEeCeeeCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCC
Q psy14495 646 FGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGN 725 (766)
Q Consensus 646 ~gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~ 725 (766)
+||+++++++++++|+++++++.|+|+||||||+|+|++++++++|+|+|+++|+||||||||+++|||+||++++ +++
T Consensus 643 ~GS~~~~~~~km~eA~~l~~~~~pd~~vdGemq~DaAl~~e~a~~K~p~s~vaG~ANVLVfPnLeAGNI~yKll~~-l~g 721 (764)
T PRK12861 643 FGSGSAASGVKMRRALEIVREQAPDLEADGEMHGDCALDEGLRARLLPMSPLKGAANLLVCPNVDAGNIAYNLLKT-EAG 721 (764)
T ss_pred cCCCCCCchhHHHHHHHHHHhhCCCcEEEecCcHHHhCCHHHHHhcCCCCcCCCcCCEEEECCcchhhHHHHHHHH-HcC
Confidence 9999999999999999999998999999999999999999999999999999999999999999999999999999 975
Q ss_pred -ccccccccccCCccEEecCCCCCHHHHHHHHHHHHHHHhc
Q psy14495 726 -GVAIGPILLGCSKPIHILTSSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 726 -~~~~G~iLlGl~~PVv~~sr~~s~~~i~n~ialA~~~a~~ 765 (766)
...+||+|+|+++||+++||++|+++|+|++++|+++||.
T Consensus 722 ~~~aiGpIL~G~~kPV~~lSRg~sv~divn~~Ala~~~a~~ 762 (764)
T PRK12861 722 SNVAVGPFLLGVNAPVNILTSSATVRRIVNMAALTVIEANR 762 (764)
T ss_pred CCceecchhhcCCCceEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 6679999999999999999999999999999999999985
No 3
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=2.9e-190 Score=1659.77 Aligned_cols=752 Identities=63% Similarity=1.037 Sum_probs=724.5
Q ss_pred hhHHHHHHhhccCCCCCcEEEeeccccCCccccceeeccchHHHHHHHhcCcccccccccCCcEEEEEecccccccCCCC
Q psy14495 10 KKSHQSALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNLVAVITNGTAVLGMGNI 89 (766)
Q Consensus 10 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~i~YtP~v~~~c~~i~~~p~~~~~~~~~~~~v~vvtdG~~iLGlGd~ 89 (766)
+++++++|+||+++++|||++.||+|++|.+||+++|||||+++|++|++||+++|.||+|+|.++|||||||||||||+
T Consensus 9 ~~~~~~~~~~h~~~~~gk~~~~~~~~~~~~~dl~~~ytpgv~~~~~~i~~~~~~~~~~t~~~n~v~vvtdg~~vLGlGd~ 88 (763)
T PRK12862 9 AELREAALDYHRFPTPGKIEIAPTKPLANQRDLALAYSPGVAAPCLEIAADPANAARYTSRGNLVAVVSNGTAVLGLGNI 88 (763)
T ss_pred hhHHHHHHHHhccCCCCeEEEEecCCCCCHHHceeeeCCchHHHHHHHHhChHhhhhcccCCcEEEEEechhhhcccccc
Confidence 45689999999996689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhHHHHhhhcCCCccccCCCCCCHHHHHHHHHHhCCCccccccccCCCCchHHHHHHHhhcCCCcEEecC
Q psy14495 90 GPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDD 169 (766)
Q Consensus 90 G~~~~~~i~~gK~~ly~~~~gi~~l~v~~~~~~~~~~v~~v~~~~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD 169 (766)
|++|||||||||++|||+|||||++|||||++|+||||++|+.+||+||+||||||++||||+||+|||++++|||||||
T Consensus 89 G~~~~~pv~egK~~l~~~~~gi~~~~i~~~~~d~d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i~~~~~~~~~ip~f~DD 168 (763)
T PRK12862 89 GPLASKPVMEGKAVLFKKFAGIDVFDIELDESDPDKLVEIVAALEPTFGGINLEDIKAPECFYIERELRERMKIPVFHDD 168 (763)
T ss_pred CcccccchHHHHHHHHHhhcCCCccccccCCCCHHHHHHHHHHhCCCcceeeeecccCchHHHHHHHHHhcCCCceEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc
Q psy14495 170 QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK 249 (766)
Q Consensus 170 ~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~ 249 (766)
|||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|..+|++++|||||||+|||+++|.++|+++|++||+
T Consensus 169 ~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~ 248 (763)
T PRK12862 169 QHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQ 248 (763)
T ss_pred cccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999899999999999999996569999999999
Q ss_pred ccCCCCHHHHhccCcEEEecCCCCCCCHHHHHhhccCcEEEeccCCCCccCHhhHhcccCcEEEEcCCCCCccccccccc
Q psy14495 250 DTTARTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLC 329 (766)
Q Consensus 250 ~~~~~~L~e~i~~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~~~~~ai~atG~~~~p~Q~NN~~~ 329 (766)
+++..+|+|+|++||||||+|++|+||+|||++|++|||||||||||||||||||++|++.+||||||++||||+||+|+
T Consensus 249 ~~~~~~l~e~~~~~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atGrs~~p~Q~NN~~~ 328 (763)
T PRK12862 249 KTDARTLAEVIEGADVFLGLSAAGVLKPEMVKKMAPRPLIFALANPTPEILPEEARAVRPDAIIATGRSDYPNQVNNVLC 328 (763)
T ss_pred hcccCCHHHHHcCCCEEEEcCCCCCCCHHHHHHhccCCEEEeCCCCcccCCHHHHHHhcCCEEEEECCcCCCCcccceee
Confidence 98889999999999999999999999999999999999999999999999999999997559999999999999999999
Q ss_pred ccchhhhhhcccCCcCCHHHHHHHHHHHHhccccccchhhhhhhcccccCCCccccCCCCCChhhHhHHHHHHHHHHHHc
Q psy14495 330 FPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKS 409 (766)
Q Consensus 330 FPgi~~g~l~~~a~~i~~~m~~aAa~aLA~l~~~~~~~~~~~~y~~~~~~~g~~~~lP~~~~~~vs~~IA~aVa~~a~~~ 409 (766)
|||||||+|+++|++|||+|+++||++||++++++.++.+..+|+.+.+.++++|++|++++++++..||.+|+++|+++
T Consensus 329 FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~~~v~~~va~aVa~~a~~~ 408 (763)
T PRK12862 329 FPYIFRGALDVGATTINEEMKIAAVRAIAELAREEQSDVVAAAYGGEDLSFGPDYLIPKPFDPRLILKIAPAVAQAAMDS 408 (763)
T ss_pred ccchhhhHHhcCCeeCCHHHHHHHHHHHHhcccccCCHHHHHhhccccccCCCCcccCCCCChhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999887776677799999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhhhccccccchHHHHHHhhhccccEEEEecCCCHHHHHHHHHHHHcCCcEEEEEcCHHHHH
Q psy14495 410 GVATKPIKDIEIYTNHLQKFVYRSSAFMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILE 489 (766)
Q Consensus 410 gvA~~~~~d~~~~~~~~~~~~~~s~~~m~~L~~~ak~~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~ 489 (766)
|+|+.+.+|+++|++++++++.+++.+|+++++++|+++ |||+|++|+|+++++|+.++.++|+++|||||+++.|+
T Consensus 409 g~a~~~~~~~~~~~~~~~~~~~~~~~~mk~l~~~ak~~~---krIa~aeGdde~vLkAa~~~~~egl~~pILVGd~~~I~ 485 (763)
T PRK12862 409 GVATRPIEDMDAYREQLNQFVYHSGLIMKPVFAAAKAAP---KRVVFAEGEDERVLRAAQVVVDEGLAKPILIGRPAVIE 485 (763)
T ss_pred CCCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC---CcEEEeCCCCHHHHHHHHHHHHcCCceEEEECCHHHHH
Confidence 999976668999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCCCeEEECCCCCcchhHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCCh
Q psy14495 490 QHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGST 569 (766)
Q Consensus 490 ~~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT 569 (766)
+.+++.+++++...+++|||++++..+++|++.|+++|++||.|+++|++.++++++++|++||++|+||++|+|.++++
T Consensus 486 ~~a~~lgl~l~~~~~~~IId~~~~~~~~~~~~~l~~~~~~g~~s~~aA~~~~~~~s~~~Av~lV~~GeADalVtG~i~t~ 565 (763)
T PRK12862 486 ARIERAGLRLRPGVDFEIVNPEDDPRYRDYWDTYHALMGRKGVTPEMARREVRRRTTLIGAMMVKRGEADAMICGTEGRY 565 (763)
T ss_pred HHHHHcCCCcccCCCeEEECCcccccHHHHHHHHhhhhhcCCCCHHHHHHHHhhccHHHHHHHHHCCCCCEEEeCCCCCc
Confidence 99999988762223699999988877889999999999999999999999998889999999999999999999999998
Q ss_pred HHHHHHHHHHhccCCCccceeEEEEEEeCCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeeCccCCCC
Q psy14495 570 KLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSN 649 (766)
Q Consensus 570 ~~~l~~~~~iig~~~g~~~~s~~~i~~~~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lGi~PkVAlLS~s~~gs~ 649 (766)
..+++.+.+++|+.+|+++++++++|+++++.++++|+|+|++||+++|++|+++++.++|.||++|||||||++++||+
T Consensus 566 ~ghte~l~~ilg~~~Gi~~~s~v~mL~~~~~~v~laD~hVn~~pt~e~La~ia~~aa~~ar~~GIePRVAvLshs~~Gs~ 645 (763)
T PRK12862 566 ERHLEFVLQVIGKRPGVRVYAAMSLLILPGRTLFLADTHVNEDPTAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSS 645 (763)
T ss_pred HHHHHHHHHHhCcCCCCccceEEEEEEeCCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcccccCCC
Confidence 89999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCC-ccc
Q psy14495 650 NNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGN-GVA 728 (766)
Q Consensus 650 ~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~-~~~ 728 (766)
++|+++++++|+++++++.|++.||||+|+|+|++++.+++|+|+|+++|+||+||||++++|||.||++++ +++ ...
T Consensus 646 ~~ee~~~i~pAiellr~~~~g~~VdGPl~aDtAf~~~~~~~K~~~s~vaG~aDvLV~P~~DqGNI~~Kll~f-~~gvn~t 724 (763)
T PRK12862 646 DSPSARKMREALEILRERAPDLEVDGEMHGDAALDEELRDRIFPDSRLEGEANLLVFPNLDAANIAYNLLKT-AAGNGLA 724 (763)
T ss_pred CCchHHHHHHHHHHHHhcCCCcEEEcCCCHHHHcCHHHHhhcCCCCccCCCCCEEEecChhHhhHHHHHHHH-hccCceE
Confidence 999999999999999998899999999999999999999999999999999999999999999999999999 874 557
Q ss_pred cccccccCCccEEecCCCCCHHHHHHHHHHHHHHHhc
Q psy14495 729 IGPILLGCSKPIHILTSSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 729 ~G~iLlGl~~PVv~~sr~~s~~~i~n~ialA~~~a~~ 765 (766)
.||+|+|+++||+++||++|+++|+|++++|++++|.
T Consensus 725 lGpil~G~~~PV~i~SR~~s~~~il~~~ala~~~a~~ 761 (763)
T PRK12862 725 VGPILLGAAKPVHILTPSATVRRIVNMTALAVADANA 761 (763)
T ss_pred ecceeccCCCceEECCCCCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999985
No 4
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2.8e-123 Score=1001.81 Aligned_cols=413 Identities=55% Similarity=0.863 Sum_probs=390.1
Q ss_pred hhHHHHHHhhccCCCCCcEEEeeccccCCccccceeeccchHHHHHHHhcCcccccccccCCcEEEEEecccccccCCCC
Q psy14495 10 KKSHQSALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNLVAVITNGTAVLGMGNI 89 (766)
Q Consensus 10 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~i~YtP~v~~~c~~i~~~p~~~~~~~~~~~~v~vvtdG~~iLGlGd~ 89 (766)
..+++++|++|+++.+|||++.|++++.+++||||+||||||++|++|.++|+..|+||.|+|+|+||||||||||||||
T Consensus 15 ~~~~~~aL~~h~~~~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~~yt~~~n~vaVvTDgtaVLGLGni 94 (432)
T COG0281 15 EQLKTEALDKHEYLDPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAYSYTARGNLVAVVTDGTAVLGLGNI 94 (432)
T ss_pred hhhhhhhHHHhccCCCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhhhcCCCCceEEEEECCceeeccccc
Confidence 44677899999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhHHHHhhhcCCCccccCCCCCCHHHHHHHHHHhCCCccccccccCCCCchHHHHHHHhhcCCCcEEecC
Q psy14495 90 GPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDD 169 (766)
Q Consensus 90 G~~~~~~i~~gK~~ly~~~~gi~~l~v~~~~~~~~~~v~~v~~~~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD 169 (766)
||.|||||||||++|||+|||||+|||++|+.+++||+++|+++.|+||+||+||+++|+||.+++++|++++|||||||
T Consensus 95 Gp~ag~pVmeGKa~Lfk~faGid~~pI~ld~~~~~ei~~~Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDD 174 (432)
T COG0281 95 GPLAGKPVMEGKAVLFKAFAGIDVLPIELDVGTNNEIIEFVKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDD 174 (432)
T ss_pred ccccCcchhhhHHHHHHHhcCCCceeeEeeCCChHHHHHHHHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCC-CCcHHHHHhc
Q psy14495 170 QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSE-LMDSNKARFI 248 (766)
Q Consensus 170 ~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~-~l~~~k~~~a 248 (766)
|||||+|+||||+||||++|++|+|+||||+|||+||+||+++|+++|++++|||+|||+|+++++|.+ .++++|..||
T Consensus 175 qqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a 254 (432)
T COG0281 175 QQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKA 254 (432)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999965 3899999999
Q ss_pred c-ccCCCCHHHHhccCcEEEecCCCCCCCHHHHHhhccCcEEEeccCCCCccCHhhHhccc-CcEEEEcCCCCCcccccc
Q psy14495 249 K-DTTARTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVR-NDAIIATGRSDYPNQVNN 326 (766)
Q Consensus 249 ~-~~~~~~L~e~i~~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~~~-~~ai~atG~~~~p~Q~NN 326 (766)
. .++.++-.+++.++|||||+|++|+||+|||++|+++||||||||||||++||||.+|+ |.+|+|||||+||||+||
T Consensus 255 ~~~~~~~~~~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTGrsd~PnQvNN 334 (432)
T COG0281 255 IEDTGERTLDLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVATGRSDYPNQVNN 334 (432)
T ss_pred HhhhccccccccccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhcCCCCEEEEeCCCCCcccccc
Confidence 6 54433326699999999999999999999999999999999999999999999999997 559999999999999999
Q ss_pred cccccchhhhhhcccCCcCCHHHHHHHHHHHHhccccccchhhhhhhcccccCCCccccCCCCCChhhHhHHHHHHHHHH
Q psy14495 327 VLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAA 406 (766)
Q Consensus 327 ~~~FPgi~~g~l~~~a~~i~~~m~~aAa~aLA~l~~~~~~~~~~~~y~~~~~~~g~~~~lP~~~~~~vs~~IA~aVa~~a 406 (766)
+|+|||||||+|++||++|||+|++|||+|||+++.++.+ ++|++|+++|+|+..+||.||+++|
T Consensus 335 vL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~---------------~~~iiP~~~d~r~~~~vA~AVa~aA 399 (432)
T COG0281 335 VLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL---------------EEYIIPPPFDPRVISRVAVAVAKAA 399 (432)
T ss_pred eeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC---------------cCCCCCCCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876541 3589999999998777999999999
Q ss_pred HHcCCCCCCCCCHHHHHHHhhhhhhcccccc
Q psy14495 407 EKSGVATKPIKDIEIYTNHLQKFVYRSSAFM 437 (766)
Q Consensus 407 ~~~gvA~~~~~d~~~~~~~~~~~~~~s~~~m 437 (766)
+++|+|+.++.+.+.|.+.++.++|.+..++
T Consensus 400 ~~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (432)
T COG0281 400 MEEGVARRPIDDEEAYEQALEARLWKPEYRM 430 (432)
T ss_pred HHcCCccCCCCCHHHHHHHHHHHhcCccccc
Confidence 9999999998889999888888877765433
No 5
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=8.1e-114 Score=966.04 Aligned_cols=366 Identities=29% Similarity=0.454 Sum_probs=338.4
Q ss_pred cccceeeccchHHHHHH---HhcCccccc--------------ccccCCcEEEEEecccccccCCCCCCCCCccchhhhH
Q psy14495 40 DDLALAYSPGVASACEE---IVSNSNNVF--------------KYTTKGNLVAVITNGTAVLGMGNIGPLASKPVMEGKA 102 (766)
Q Consensus 40 ~~l~i~YtP~v~~~c~~---i~~~p~~~~--------------~~~~~~~~v~vvtdG~~iLGlGd~G~~~~~~i~~gK~ 102 (766)
+.|||+||||||+||++ +|++|+|+| +|+.++.+++|||||||||||||||++ ||||||||+
T Consensus 98 e~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-Gm~I~~GKl 176 (563)
T PRK13529 98 EMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIG-GMGIPIGKL 176 (563)
T ss_pred HhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCC-cccccccHH
Confidence 67899999999999998 799999998 577777899999999999999999995 699999999
Q ss_pred HHHhhhcCCC---c----cccCCCC----CC-------------------HHHHHHHHHHhCCCccccccccCCCCchHH
Q psy14495 103 VLFKKFAGID---V----FDLEINE----TD-------------------PDKLCDIIFSLEPTFGGINLEDIKAPECFY 152 (766)
Q Consensus 103 ~ly~~~~gi~---~----l~v~~~~----~~-------------------~~~~v~~v~~~~p~~g~i~~ED~~~~~af~ 152 (766)
+|||+||||| + ||+|||| +| +||||++|+.+||++ .||||||++||||+
T Consensus 177 ~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~P~~-~I~~EDf~~~~af~ 255 (563)
T PRK13529 177 SLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRFPNA-LLQFEDFAQKNARR 255 (563)
T ss_pred HHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhCCCe-EEehhhcCCchHHH
Confidence 9999999999 4 5556666 35 899999999999998 99999999999999
Q ss_pred HHHHHhhcCCCcEEecCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHH----cCCC----CccEE
Q psy14495 153 IEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIID----LGFP----LQNIF 224 (766)
Q Consensus 153 il~~~~~~~~~~~fnDD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~----~g~~----~~~i~ 224 (766)
||+|||+ +||||||||||||+|+|||+|||+|++|++|+||||||+|||+||+|||++|.+ +|++ ++|||
T Consensus 256 iL~ryr~--~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~ 333 (563)
T PRK13529 256 ILERYRD--EICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFF 333 (563)
T ss_pred HHHHhcc--CCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE
Confidence 9999998 599999999999999999999999999999999999999999999999999886 6997 47999
Q ss_pred EEcCCccccCCCCCCCcHHHHHhccccCC----------CCHHHHhccC--cEEEecCC-CCCCCHHHHHhhcc---CcE
Q psy14495 225 VTDLAGVLYKGRSELMDSNKARFIKDTTA----------RTLSDIIPNA--DIFLGLSV-SGVLKKEMVLQMAK---NPI 288 (766)
Q Consensus 225 ~~D~~Glv~~~r~~~l~~~k~~~a~~~~~----------~~L~e~i~~~--~vliG~S~-~g~ft~evv~~M~~---~Pi 288 (766)
||||+|||+++|. +|+++|++||++.+. .+|+|+|+++ |||||+|+ +|+||||||++|++ |||
T Consensus 334 ~vD~~GLl~~~r~-~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPI 412 (563)
T PRK13529 334 MVDRQGLLTDDMP-DLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPI 412 (563)
T ss_pred EEcCCCeEeCCCC-cchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCE
Confidence 9999999999995 599999999997542 5899999985 99999998 99999999999995 999
Q ss_pred EEeccCCCC--ccCHhhHhccc-CcEEEEcCCC----------CCcccccccccccchhhhhhcccCCcCCHHHHHHHHH
Q psy14495 289 ILALANPLP--EILPEDIKSVR-NDAIIATGRS----------DYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVH 355 (766)
Q Consensus 289 IfaLsNPt~--E~~pe~a~~~~-~~ai~atG~~----------~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aAa~ 355 (766)
||||||||| |||||||++|+ |+|||||||+ ++|||+||+|+|||||||+++++|++|||+|+++||+
T Consensus 413 IFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~ 492 (563)
T PRK13529 413 IFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAH 492 (563)
T ss_pred EEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHH
Confidence 999999998 99999999995 9999999985 8999999999999999999999999999999999999
Q ss_pred HHHhccccccchhhhhhhcccccCCCccccCCCCCC-hhhHhHHHHHHHHHHHHcCCCCCC-CCCHHHHHH
Q psy14495 356 AIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFD-PRLMIKIAPAVAIAAEKSGVATKP-IKDIEIYTN 424 (766)
Q Consensus 356 aLA~l~~~~~~~~~~~~y~~~~~~~g~~~~lP~~~~-~~vs~~IA~aVa~~a~~~gvA~~~-~~d~~~~~~ 424 (766)
+||+++++++ ++..+++|++++ ++++.+||.+|+++|+++|+|+.+ ++|+.+|++
T Consensus 493 alA~~v~~~~--------------l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~~~~~i~ 549 (563)
T PRK13529 493 ALADCVPLAK--------------PGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARETSDEDLEQAIE 549 (563)
T ss_pred HHHhhCcccc--------------CCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 9999998765 234479999999 579999999999999999999975 357788877
No 6
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=5.1e-113 Score=962.42 Aligned_cols=391 Identities=28% Similarity=0.434 Sum_probs=349.6
Q ss_pred chhhhhhHHHHHHhhccCCCCCcEEEeeccccCCccc-cceeeccchHHHHHH---HhcCccccc--------------c
Q psy14495 5 KKNFCKKSHQSALEYHEFPIPGKISVIPSKQLSNQDD-LALAYSPGVASACEE---IVSNSNNVF--------------K 66 (766)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-l~i~YtP~v~~~c~~---i~~~p~~~~--------------~ 66 (766)
|.-|+.++++..-.+. =++-+++.++ |||+||||||++|++ +|++|+|+| +
T Consensus 98 ky~~L~~L~~~Ne~Lf-----------y~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n 166 (581)
T PLN03129 98 KYRALMDLQERNERLF-----------YRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKN 166 (581)
T ss_pred HHHHHHHHHhhCcccc-----------hhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhc
Confidence 4456777766652222 1234566666 899999999999998 799999998 5
Q ss_pred cccCCcEEEEEecccccccCCCCCCCCCccchhhhHHHHhhhcCCC---c----cccCCCCC------------------
Q psy14495 67 YTTKGNLVAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGID---V----FDLEINET------------------ 121 (766)
Q Consensus 67 ~~~~~~~v~vvtdG~~iLGlGd~G~~~~~~i~~gK~~ly~~~~gi~---~----l~v~~~~~------------------ 121 (766)
|+.+++++||||||||||||||+|++ ||||||||++|||+||||| + ||+||||+
T Consensus 167 ~p~~~v~viVVTDG~rILGLGDlG~~-Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g 245 (581)
T PLN03129 167 WPERDVQVIVVTDGERILGLGDLGVQ-GMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTG 245 (581)
T ss_pred CCCcCceEEEEecCcceeeccccCCC-ccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCch
Confidence 77778999999999999999999998 6999999999999999999 4 45555552
Q ss_pred -----CHHHHHHHHHHhC-CCccccccccCCCCchHHHHHHHhhcCCCcEEecCCchhHHHHHHHHHHHHhHhCCcCCCc
Q psy14495 122 -----DPDKLCDIIFSLE-PTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDC 195 (766)
Q Consensus 122 -----~~~~~v~~v~~~~-p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~qGTa~v~lA~ll~al~~~~~~l~d~ 195 (766)
++||||++|+..| |+. .||||||++||||+||+|||+ +||||||||||||+|+|||+|||+|++|++|+||
T Consensus 246 ~eY~~~~defv~av~~~fGp~~-~I~~EDf~~~~af~iL~ryr~--~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~ 322 (581)
T PLN03129 246 EEYDELVDEFMEAVKQRWGPKV-LVQFEDFANKNAFRLLQRYRT--THLCFNDDIQGTAAVALAGLLAALRATGGDLADQ 322 (581)
T ss_pred hhHHHhHHHHHHHHHHHhCCcc-EEehhhcCCccHHHHHHHhcc--CCCEeccccchHHHHHHHHHHHHHHHhCCchhhc
Confidence 3899999999999 887 999999999999999999996 6999999999999999999999999999999999
Q ss_pred eEEEECcchhhHHHHHHHHH-----cCCC----CccEEEEcCCccccCCCCCCCcHHHHHhcccc-CCCCHHHHhcc--C
Q psy14495 196 KLVVSGAGAAALACLDLIID-----LGFP----LQNIFVTDLAGVLYKGRSELMDSNKARFIKDT-TARTLSDIIPN--A 263 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~-----~g~~----~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~-~~~~L~e~i~~--~ 263 (766)
||||+|||+||+|||+||++ .|++ ++||||||++|||+++|.++|+++|++||++. +..+|+|+|++ |
T Consensus 323 riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkp 402 (581)
T PLN03129 323 RILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKP 402 (581)
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCC
Confidence 99999999999999999986 5886 57999999999999999655999999999975 45799999998 8
Q ss_pred cEEEecCC-CCCCCHHHHHhhc---cCcEEEeccCCC--CccCHhhHhccc-CcEEEEcC----------CCCCcccccc
Q psy14495 264 DIFLGLSV-SGVLKKEMVLQMA---KNPIILALANPL--PEILPEDIKSVR-NDAIIATG----------RSDYPNQVNN 326 (766)
Q Consensus 264 ~vliG~S~-~g~ft~evv~~M~---~~PiIfaLsNPt--~E~~pe~a~~~~-~~ai~atG----------~~~~p~Q~NN 326 (766)
|||||+|+ +|+|||||||+|+ +||||||||||| ||||||||++|+ |++||||| ++++|||+||
T Consensus 403 tvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN 482 (581)
T PLN03129 403 TVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANN 482 (581)
T ss_pred CEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccc
Confidence 99999997 8999999999997 999999999999 799999999995 99999997 7899999999
Q ss_pred cccccchhhhhhcccCCcCCHHHHHHHHHHHHhccccccchhhhhhhcccccCCCccccCCCCCC-hhhHhHHHHHHHHH
Q psy14495 327 VLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFD-PRLMIKIAPAVAIA 405 (766)
Q Consensus 327 ~~~FPgi~~g~l~~~a~~i~~~m~~aAa~aLA~l~~~~~~~~~~~~y~~~~~~~g~~~~lP~~~~-~~vs~~IA~aVa~~ 405 (766)
+|+|||||||+++++|++|||+|+++||++||+++++++ +...+++|++++ ++++.+||.+|+++
T Consensus 483 ~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~~~--------------l~~~~l~P~~~~ir~vs~~VA~aVa~~ 548 (581)
T PLN03129 483 AYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEE--------------LAKGAIYPPFSRIRDISAHVAAAVAAK 548 (581)
T ss_pred eeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCccc--------------CCCCeecCCCcchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764 233478999888 67999999999999
Q ss_pred HHHcCCCCCCC--CCHHHHHH
Q psy14495 406 AEKSGVATKPI--KDIEIYTN 424 (766)
Q Consensus 406 a~~~gvA~~~~--~d~~~~~~ 424 (766)
|+++|+|+.++ +++.+|++
T Consensus 549 A~~~G~A~~~~~~~~~~~~i~ 569 (581)
T PLN03129 549 AYEEGLATRLPRPEDLVEYAE 569 (581)
T ss_pred HHHcCCCCCCCCHHHHHHHHH
Confidence 99999998533 46777776
No 7
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.2e-112 Score=953.76 Aligned_cols=368 Identities=30% Similarity=0.484 Sum_probs=336.3
Q ss_pred ccccceeeccchHHHHHH---HhcCccccc-ccccCCc-------------EEEEEecccccccCCCCCCCCCccchhhh
Q psy14495 39 QDDLALAYSPGVASACEE---IVSNSNNVF-KYTTKGN-------------LVAVITNGTAVLGMGNIGPLASKPVMEGK 101 (766)
Q Consensus 39 ~~~l~i~YtP~v~~~c~~---i~~~p~~~~-~~~~~~~-------------~v~vvtdG~~iLGlGd~G~~~~~~i~~gK 101 (766)
.+.|||+||||||++|++ +|++|+|+| ++++||| ++||||||||||||||+|++ ||||||||
T Consensus 99 ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~-Gm~I~~GK 177 (559)
T PTZ00317 99 KELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGAN-GMGISIGK 177 (559)
T ss_pred HHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCcccc-cccccccH
Confidence 467899999999999998 699999998 4777777 99999999999999999995 69999999
Q ss_pred HHHHhhhcCCC-------ccccCCCCC----C-------------------HHHHHHHHHHhCCCccccccccCCCCchH
Q psy14495 102 AVLFKKFAGID-------VFDLEINET----D-------------------PDKLCDIIFSLEPTFGGINLEDIKAPECF 151 (766)
Q Consensus 102 ~~ly~~~~gi~-------~l~v~~~~~----~-------------------~~~~v~~v~~~~p~~g~i~~ED~~~~~af 151 (766)
++|||+||||| +||+||||+ | +||||++|+.+||+. .||||||++||||
T Consensus 178 l~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~P~~-~Iq~EDf~~~naf 256 (559)
T PTZ00317 178 LSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRWPNA-VVQFEDFSNNHCF 256 (559)
T ss_pred HHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhCCCe-EEehhhcCCccHH
Confidence 99999999999 456666653 3 899999999999995 9999999999999
Q ss_pred HHHHHHhhcCCCcEEecCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHH----cCCC----CccE
Q psy14495 152 YIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIID----LGFP----LQNI 223 (766)
Q Consensus 152 ~il~~~~~~~~~~~fnDD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~----~g~~----~~~i 223 (766)
+||+|||++ ||||||||||||+|+|||+|||+|++|++|+||||||+|||+||+|||++|.+ +|++ ++||
T Consensus 257 ~iL~kyr~~--i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i 334 (559)
T PTZ00317 257 DLLERYQNK--YRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSF 334 (559)
T ss_pred HHHHHhccC--CCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeE
Confidence 999999985 99999999999999999999999999999999999999999999999999874 7997 4799
Q ss_pred EEEcCCccccCCCCCCCcHHHHHhcccc---C---CCCHHHHhccC--cEEEecCC-CCCCCHHHHHhhc---cCcEEEe
Q psy14495 224 FVTDLAGVLYKGRSELMDSNKARFIKDT---T---ARTLSDIIPNA--DIFLGLSV-SGVLKKEMVLQMA---KNPIILA 291 (766)
Q Consensus 224 ~~~D~~Glv~~~r~~~l~~~k~~~a~~~---~---~~~L~e~i~~~--~vliG~S~-~g~ft~evv~~M~---~~PiIfa 291 (766)
||+||+|||+++|.++|+++|++||++. + ..+|+|+|+++ |||||+|+ +|+|||||||+|+ +||||||
T Consensus 335 ~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFa 414 (559)
T PTZ00317 335 YLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFP 414 (559)
T ss_pred EEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 9999999999999756999999999963 2 46999999986 99999998 9999999999999 6999999
Q ss_pred ccCCC--CccCHhhHhccc-CcEEEEcCCC----------CCcccccccccccchhhhhhcccCCcCCHHHHHHHHHHHH
Q psy14495 292 LANPL--PEILPEDIKSVR-NDAIIATGRS----------DYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIA 358 (766)
Q Consensus 292 LsNPt--~E~~pe~a~~~~-~~ai~atG~~----------~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aAa~aLA 358 (766)
||||| +|||||||++|+ |+|||||||+ ++|||+||+|+|||||||+++++|++|||+|+++||++||
T Consensus 415 LSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA 494 (559)
T PTZ00317 415 LSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLA 494 (559)
T ss_pred CCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHH
Confidence 99999 699999999995 8999999986 8999999999999999999999999999999999999999
Q ss_pred hccccccchhhhhhhcccccCCCccccCCCCCC-hhhHhHHHHHHHHHHHHcCCCCC---CC--CCHHHHHH
Q psy14495 359 DLAQIEQSDIVNTTYGITNMTFGSECIIPKPFD-PRLMIKIAPAVAIAAEKSGVATK---PI--KDIEIYTN 424 (766)
Q Consensus 359 ~l~~~~~~~~~~~~y~~~~~~~g~~~~lP~~~~-~~vs~~IA~aVa~~a~~~gvA~~---~~--~d~~~~~~ 424 (766)
+++++++ +...+++|++++ ++++.+||.+|+++|+++|+|+. +. +++.+|++
T Consensus 495 ~~v~~~~--------------l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~ 552 (559)
T PTZ00317 495 TLVSEED--------------LREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVK 552 (559)
T ss_pred hhCCccc--------------cCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHH
Confidence 9988764 123378999999 57999999999999999999984 22 35677776
No 8
>KOG1257|consensus
Probab=100.00 E-value=7.5e-111 Score=914.62 Aligned_cols=367 Identities=31% Similarity=0.489 Sum_probs=338.4
Q ss_pred cccceeeccchHHHHHH---HhcCccccc--------------ccccCCcEEEEEecccccccCCCCCCCCCccchhhhH
Q psy14495 40 DDLALAYSPGVASACEE---IVSNSNNVF--------------KYTTKGNLVAVITNGTAVLGMGNIGPLASKPVMEGKA 102 (766)
Q Consensus 40 ~~l~i~YtP~v~~~c~~---i~~~p~~~~--------------~~~~~~~~v~vvtdG~~iLGlGd~G~~~~~~i~~gK~ 102 (766)
+-+||+||||||+|||+ |||+|+|+| +|+.++++.||||||+|||||||||++| |||++||+
T Consensus 112 ~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDlG~~G-mgIpvgKL 190 (582)
T KOG1257|consen 112 ELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERILGLGDLGVNG-MGIPVGKL 190 (582)
T ss_pred HhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCceecccccccCc-ccceecHH
Confidence 55799999999999998 899999988 6888888999999999999999999985 99999999
Q ss_pred HHHhhhcCCC-------ccccCCCCC----C-------------------HHHHHHHHHHhC-CCccccccccCCCCchH
Q psy14495 103 VLFKKFAGID-------VFDLEINET----D-------------------PDKLCDIIFSLE-PTFGGINLEDIKAPECF 151 (766)
Q Consensus 103 ~ly~~~~gi~-------~l~v~~~~~----~-------------------~~~~v~~v~~~~-p~~g~i~~ED~~~~~af 151 (766)
.|||+||||+ +|||||||+ | +|||+++|+.+| |+. .||||||+++|||
T Consensus 191 ~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~-lIqFEDF~~~nAf 269 (582)
T KOG1257|consen 191 ALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNT-LIQFEDFANHNAF 269 (582)
T ss_pred HHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcce-EEEehhccchhHH
Confidence 9999999999 577888873 1 789999999999 998 9999999999999
Q ss_pred HHHHHHhhcCCCcEEecCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHH----HcCCC----CccE
Q psy14495 152 YIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLII----DLGFP----LQNI 223 (766)
Q Consensus 152 ~il~~~~~~~~~~~fnDD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~----~~g~~----~~~i 223 (766)
++|+|||++ +|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+|++ ..|++ ++||
T Consensus 270 rlL~kYr~~--~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkI 347 (582)
T KOG1257|consen 270 RLLEKYRNK--YCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKI 347 (582)
T ss_pred HHHHHhccc--cceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccE
Confidence 999999985 8999999999999999999999999999999999999999999999999975 46998 6899
Q ss_pred EEEcCCccccCCCCCCCcHHHHHhcccc-CCCCHHHHhcc--CcEEEecCC-CCCCCHHHHHhhc---cCcEEEeccCCC
Q psy14495 224 FVTDLAGVLYKGRSELMDSNKARFIKDT-TARTLSDIIPN--ADIFLGLSV-SGVLKKEMVLQMA---KNPIILALANPL 296 (766)
Q Consensus 224 ~~~D~~Glv~~~r~~~l~~~k~~~a~~~-~~~~L~e~i~~--~~vliG~S~-~g~ft~evv~~M~---~~PiIfaLsNPt 296 (766)
||+|++|||+++|+.+++++|.+|||+. +..+|+|+|+. ||||||+|+ +|+|||||||+|+ +|||||||||||
T Consensus 348 wlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT 427 (582)
T KOG1257|consen 348 WLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNPT 427 (582)
T ss_pred EEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCCc
Confidence 9999999999999778999999999975 46899999996 799999998 9999999999999 899999999999
Q ss_pred --CccCHhhHhcc-cCcEEEEcCCC----------CCcccccccccccchhhhhhcccCCcCCHHHHHHHHHHHHhcccc
Q psy14495 297 --PEILPEDIKSV-RNDAIIATGRS----------DYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQI 363 (766)
Q Consensus 297 --~E~~pe~a~~~-~~~ai~atG~~----------~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aAa~aLA~l~~~ 363 (766)
+||||||||+| .|+||||||++ ++|+|+||+|+|||||||++++++++|+|+||++||++||+++++
T Consensus 428 ~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~i~D~mfl~Aae~LA~~v~~ 507 (582)
T KOG1257|consen 428 SKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARRIPDEMFLAAAEALAEQVSE 507 (582)
T ss_pred cccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCccCCHHHHHHHHHHHHhhCCH
Confidence 49999999999 58999999976 688999999999999999999999999999999999999999887
Q ss_pred ccchhhhhhhcccccCCCccccCCCCCC-hhhHhHHHHHHHHHHHHcCCCCCC--CCCHHHHHH
Q psy14495 364 EQSDIVNTTYGITNMTFGSECIIPKPFD-PRLMIKIAPAVAIAAEKSGVATKP--IKDIEIYTN 424 (766)
Q Consensus 364 ~~~~~~~~~y~~~~~~~g~~~~lP~~~~-~~vs~~IA~aVa~~a~~~gvA~~~--~~d~~~~~~ 424 (766)
++. ..| .++|+..+ +++|.+||.+|.++|+++|+|+.. ++|.++|++
T Consensus 508 e~~------------~~g--~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~ 557 (582)
T KOG1257|consen 508 EEL------------EKG--RLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIE 557 (582)
T ss_pred hHh------------hcC--CcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHH
Confidence 652 124 57898887 458999999999999999999963 478999987
No 9
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=100.00 E-value=4.3e-78 Score=643.43 Aligned_cols=324 Identities=40% Similarity=0.629 Sum_probs=315.3
Q ss_pred ccchHHHHHHhhhccccEEEEecCCCHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECC-CCCc
Q psy14495 436 FMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDP-DFNK 514 (766)
Q Consensus 436 ~m~~L~~~ak~~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~-~~~~ 514 (766)
|++++++++++.+ |||+||||+|+|+++|++.+.++|+++|||+|++++|+..+++.+++++ .++|+|| .+..
T Consensus 1 ~~~~i~~~a~~~~---kriv~~Eged~rvl~Aa~~~~~~g~~~~ilvg~~~~i~~~~~~~gl~l~---~~eiidp~~~~~ 74 (327)
T COG0280 1 FLYRLFERARKAP---KRIVLPEGEEERVLRAAQVLAKEGLAKPILVGRPEEIEEVAKALGLDLD---GIEIINPELDPE 74 (327)
T ss_pred CchHHHHHHhhcC---CeEEecCCccHHHHHHHHHHHhcCCCceEEEcCHHHHHHHHHHhccccc---ccEEeCcccCch
Confidence 5789999999999 8999999999999999999999999999999999999999999999987 5999999 5555
Q ss_pred chhHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEE
Q psy14495 515 QYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSN 594 (766)
Q Consensus 515 ~~~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i 594 (766)
++++|++.|+++|++||+|+++|++.++++++++|++||+.|+||+||||.++||..+++.+++++|++||++..|++++
T Consensus 75 ~~~~y~~~~~e~~k~kG~t~~~a~~~~~~d~~~~a~~mv~~g~aD~~v~G~~~tt~~~lr~~lqii~~~pG~~~~s~v~i 154 (327)
T COG0280 75 RFEEYVDRLYELRKRKGVTPEDAQELVREDPTVFAAMMVALGEADGLVSGAVHTTADTLRPALQIIGTRPGVSLVSSVFI 154 (327)
T ss_pred hHHHHHHHHHHHhccCCCCHHHHHHHhccCcHHHHHHHHHcCCCCEEEecCccCHHHHHHHHHHHhCCCCCCeeEEEEEE
Confidence 78999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeeCccCCCCCCcchHHHHHHHHHHHccCC-CceE
Q psy14495 595 LILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMP-ELEI 673 (766)
Q Consensus 595 ~~~~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lGi~PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~~~-~~~v 673 (766)
|..+++.+||+||++|++||+|||++||+++++.+|.||++||||||||||+||+++|++++++||.++++++.| +|.|
T Consensus 155 m~~~~~~l~~~D~avn~~PtaeeladIa~~sa~~a~~fgi~PkVAlLS~St~gs~~~~~~~kv~ea~~i~~~~~~~dl~v 234 (327)
T COG0280 155 MLLPDGTLFFADCAVNPDPTAEELADIAENAAETARRFGIEPKVALLSYSTFGSGKGPSTDKVREATKILRERAPPDLEV 234 (327)
T ss_pred EEeCCceEEEEecccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEeecCCCCCCccHHHHHHHHHHHHhcCCcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888 9999
Q ss_pred EcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecCCCCCHHHHH
Q psy14495 674 DGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVRRIV 753 (766)
Q Consensus 674 dG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~sr~~s~~~i~ 753 (766)
|||||+|+|++++++++|+|+|+++|+||||||||+++|||.||++|+ ++++..+||+|+|+++||+++||+||+++|+
T Consensus 235 DGelq~DaA~~~~va~~k~p~s~vaG~ANvlVfP~LeagNI~yK~lq~-~~~a~avGPil~G~~kPV~~lSrg~sv~dIv 313 (327)
T COG0280 235 DGELQFDAALVEKVAAKKAPDSPLAGSANVLVFPDLEAGNIGYKLLQR-LGGALAVGPILQGLAKPVNDLSRGASVEDIV 313 (327)
T ss_pred ccCcchhhhcCHHHHHhhCCCCCcCCCCCEEEcCCchHHHHHHHHHHH-hcCCceechhhhcCccchhhcCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy14495 754 NMTALCVIDALSK 766 (766)
Q Consensus 754 n~ialA~~~a~~~ 766 (766)
|++++|+.+|+.+
T Consensus 314 n~~alaa~qa~~~ 326 (327)
T COG0280 314 NMAALAAVQAQTK 326 (327)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999864
No 10
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=100.00 E-value=4.3e-75 Score=631.23 Aligned_cols=321 Identities=31% Similarity=0.510 Sum_probs=311.3
Q ss_pred ccchHHHHHHhhhccccEEEEecCCCHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcc
Q psy14495 436 FMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQ 515 (766)
Q Consensus 436 ~m~~L~~~ak~~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~ 515 (766)
+++++++++|..+ +||+|+||+|+++|+|++++.++|+++|||||++++|++.+++++++++ +++|||++++..
T Consensus 3 ~~~~l~~~a~~~~---~riv~~e~~d~~vl~Aa~~a~~eg~~~piLvG~~~~I~~~~~~~g~~~~---~~eII~~~~~~~ 76 (324)
T PRK09653 3 LFESLKEKAKGKK---KKIVLPEGEDERVLKAAKRLQKEGLVEPILLGNPEEIRAKAKELGLDLD---GVEIIDPETYPL 76 (324)
T ss_pred HHHHHHHHHhcCC---CEEEEeCCCCHHHHHHHHHHHHCCCceEEEECCHHHHHHHHHHcCCCcC---CCEEECCCCchh
Confidence 6788999999865 8999999999999999999999999999999999999999999998776 899999999988
Q ss_pred hhHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEE
Q psy14495 516 YKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNL 595 (766)
Q Consensus 516 ~~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~ 595 (766)
+.+|++.|+++|+|||+|+++|+ .+ ++|+++|++||++|+||++|||.++||+++|+.+++++|..+|++++|++++|
T Consensus 77 ~~~~~~~~~~~r~~kg~s~~~a~-~~-~~~~~~A~~lV~~G~aD~lvsG~~g~T~~~l~~~l~~ig~~~g~~~~s~~~~~ 154 (324)
T PRK09653 77 LEEFAEAFVELRKGKGTEEDAAE-LL-KDPNYFGTMLVKLGKADGMVSGAIHSTADTLRPALQIIKTKPGVKTVSSVFIM 154 (324)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHH-Hh-ccchHHHHHHHHcCCCCEEEeCCCCChHHHHHHHHHHhccCCCCceeEEEEEE
Confidence 99999999999999999999986 77 68999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeeCccCCCCCCcchHHHHHHHHHHHccCCCceEEc
Q psy14495 596 ILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDG 675 (766)
Q Consensus 596 ~~~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lGi~PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG 675 (766)
|++++.+||+|||+|++||++||++||+||+.++|.||++|||||||+||+||+++|++++++||+++++++.|+|.|||
T Consensus 155 ~~~~~~~~l~D~gvN~~P~~e~l~~ia~~a~~~ar~lG~~PkVAlLs~s~~Gs~~~~~~~~~~ea~~ll~~~~~~~~vdG 234 (324)
T PRK09653 155 VKGDERYIFADCAVNPNPTAEQLAEIAINSAETAKAFGIDPKVAMLSFSTKGSAKGPEVDKVQEATEIAKELAPDLKIDG 234 (324)
T ss_pred EcCCCcEEEEeCeEeCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCcHHHHHHHHHHHHhhCCCCeEEe
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecCCCCCHHHHHHH
Q psy14495 676 EMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVRRIVNM 755 (766)
Q Consensus 676 ~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~sr~~s~~~i~n~ 755 (766)
|||+|+|++++++++|+|+|+++|+||||||||+++|||+||++++ ++++..+||+|+|+++||+++||++|+++|+|+
T Consensus 235 el~~D~A~~~~~~~~k~~~s~v~G~AnvLi~P~l~agNi~yK~l~~-~~~~~~~Gpil~G~~~Pv~~~Sr~~s~~~i~~~ 313 (324)
T PRK09653 235 ELQFDAAFVPEVAAKKAPGSPVAGKANVFVFPSLEAGNIGYKIAQR-LGGFEAVGPILQGLNKPVNDLSRGCSVEDIYNL 313 (324)
T ss_pred cchHHHhCCHHHHHhhCCCCccCCcCCEEEcCChHHhHHHHHHHHH-hcCCeEechHHhCCCCCEEeCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q psy14495 756 TALCVIDALS 765 (766)
Q Consensus 756 ialA~~~a~~ 765 (766)
+++|+.+|++
T Consensus 314 ~ala~~~a~~ 323 (324)
T PRK09653 314 ALITAAQAQG 323 (324)
T ss_pred HHHHHHHhhc
Confidence 9999999974
No 11
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=100.00 E-value=1.2e-73 Score=616.81 Aligned_cols=317 Identities=39% Similarity=0.630 Sum_probs=288.5
Q ss_pred ccchHHHHHHhhhccccEEEEecCCCHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcc
Q psy14495 436 FMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQ 515 (766)
Q Consensus 436 ~m~~L~~~ak~~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~ 515 (766)
|++++++++|+.+ |||+|+||+|+++|+|++++.++|+++|||||++++|+..+++++++++ +++|+|+.++..
T Consensus 2 f~~~i~~~ak~~~---krIv~aeaeD~~vL~Aa~~~~~egia~pILvG~~~~I~~~a~~~~l~l~---~~eIid~~~~~~ 75 (319)
T PF01515_consen 2 FMEQIIEKAKKKP---KRIVFAEAEDERVLEAAKQAVEEGIAKPILVGDREEIREIAKELGLDLD---GFEIIDPEDSEK 75 (319)
T ss_dssp HHHHHHHHHTTS----EEEEES-TTSHHHHHHHHHHHHTTSCEEEEES-HHHHHHHHHHTTC--T---TSEEE-TTTSTT
T ss_pred hHHHHHHHHhcCC---CeEEEeCCCCHHHHHHHHHHHHcCceEEEEEeChHHhcchhhhcccccc---cceecCccccHH
Confidence 6889999999887 8999999999999999999999999999999999999999999999987 799999999999
Q ss_pred hhHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEE
Q psy14495 516 YKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNL 595 (766)
Q Consensus 516 ~~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~ 595 (766)
+++|++.|+++|++||+|.+.|++.++ +++++|++||+.|+||++|+|.++||.++++.+++++|..++.+.+|++++|
T Consensus 76 ~~~y~~~~~~lr~rKG~~~~~a~~~~~-~~~~~a~~mv~~G~aD~lv~G~~~t~~~~lr~~l~~~~~~~~~~~~s~~~~~ 154 (319)
T PF01515_consen 76 LEEYAEEYYELRQRKGMTPEEARREVR-DPNYFAAMMVRLGDADALVKGLIHTTADMLRAVLQVIGGKPGVKVVSSVSIM 154 (319)
T ss_dssp HHHHHHHHHHHHTTCTS-HHHHHHHTT-SHHHHHHHHHHTTSSSEEEE-SSSHHHHHHHHHHHHTCBSTTSSS-EEEEEE
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHH-HHHHHHHHHHHcCCCCEEecCCCCCHHHHHHHHHHHHccCCCCcceEEEEEE
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcC-CCCeEEEeeCccCCCCCCcchHHHHHHHHHHHccCCCceEE
Q psy14495 596 ILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLG-LKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEID 674 (766)
Q Consensus 596 ~~~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lG-i~PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~~~~~~vd 674 (766)
..+++++|++||++|++||+|||++|++++++++|.|| ++||||||||||+||+++|+++++++|.+++++..|++.||
T Consensus 155 ~~~~~~l~~aD~~vn~~P~~e~la~Ia~~aa~~~~~~g~~~PkvA~LS~s~~gs~~~~s~~~~~~a~~~~~~~~~~~~vd 234 (319)
T PF01515_consen 155 EIPNKLLFFADTAVNIDPTAEQLAEIAENAAETARRFGIEEPKVALLSYSEFGSPKGPSTDKVREAVEIAREKQPDLIVD 234 (319)
T ss_dssp EETTEEEEEESSSS-SS--HHHHHHHHHHHHHHHHHTTSSS-EEEEE-SSSTTSSTSHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred EECCccEEEecCeeeeCcCHHHHHHHHHHHHHHHHhhCCCCCeEEEEeCccCCCCCCchHHHHHHHHHHHHhhCCCceec
Confidence 99999999999999999999999999999999999999 56999999999999999999999999999999999999999
Q ss_pred cccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecCCCCCHHHHHH
Q psy14495 675 GEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVRRIVN 754 (766)
Q Consensus 675 G~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~sr~~s~~~i~n 754 (766)
||||+|+|++++++++|+|+|+++|+||||||||+++|||+||++++ ++++..+||+|+|+++||+++||++++++|+|
T Consensus 235 Ge~q~D~Al~~~~~~~k~~~s~v~G~AnvLIfPnl~agNi~~K~l~~-~~~~~~iGpil~G~~~Pv~~~sr~~s~~~i~~ 313 (319)
T PF01515_consen 235 GEMQFDAALSPEVAAKKYPFSPVAGDANVLIFPNLEAGNIAYKLLQR-LGGAAAIGPILQGLKKPVHILSRSDSVRDIVN 313 (319)
T ss_dssp EEE-HHHHH-HHHHHHHSTTSSTTTC-SEEE-SSHHHHHHHHHHHHH-TTTEEEEEEEEESBSS-EEE--TTS-HHHHHH
T ss_pred CccccchhcCHHHHHHhCCCCccCCcCCEEEeCChhHhHHHHHHHHH-hhCcceecchhhcCCCCeEECCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99989999999999999999999999999999
Q ss_pred HHHHHH
Q psy14495 755 MTALCV 760 (766)
Q Consensus 755 ~ialA~ 760 (766)
++++|+
T Consensus 314 ~~alaa 319 (319)
T PF01515_consen 314 SIALAA 319 (319)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999986
No 12
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=100.00 E-value=6.2e-73 Score=606.80 Aligned_cols=302 Identities=33% Similarity=0.542 Sum_probs=293.8
Q ss_pred EEEecCCCHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcchhHHHHHHHHHHccCCCC
Q psy14495 454 IIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMI 533 (766)
Q Consensus 454 Iv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~~~lr~~Kg~s 533 (766)
||||||+|+++|+|++++.++|+++|||||++++|++.+++.|++++ +++|||+++++.+++||+.|+++|++||+|
T Consensus 1 Ivf~Eg~d~~vl~Aa~~~~~egi~~pILvG~~~~I~~~~~~~gl~l~---~~eIid~~~~~~~~~~~~~~~~lr~~kG~~ 77 (303)
T TIGR00651 1 IVFPEGWEPRVLKAAALLAERGIATPVVLGNPEEIVPSAAGCNLDLG---HVVIIDPDVSPDRESYAERYYELRKHKGMT 77 (303)
T ss_pred CCCCCcCCHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHHHcCCCcC---CcEEECCCCchHHHHHHHHHHHHHhcCCCC
Confidence 68999999999999999999999999999999999999999999886 899999999999999999999999999999
Q ss_pred HHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEEEeCCCeEEEEeccccCCC
Q psy14495 534 EQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENP 613 (766)
Q Consensus 534 ~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~~~~~~~~l~D~g~Ni~P 613 (766)
.++|++.++ +|+++|++||+.|+||++|||.++||+++|+++++++|..+|.+++|++++|+++++.+||+|||+|++|
T Consensus 78 ~~~A~~~~~-~~~~~a~~lv~~G~aD~lv~G~~~tt~~~l~~~l~~i~~~~g~~~~s~~~~~~~~~~~~~~~D~~vn~~P 156 (303)
T TIGR00651 78 LAQARKQLR-DESYFATMMVALGEADGLVSGAVHTTADTLRPALQIIKTLPGVKIVSSVFIMDLNEEVLVFGDCAVNPDP 156 (303)
T ss_pred HHHHHHHhh-ccHHHHHHHHHCCCCCEEEeCCCCCHHHHHHHHHHHhccCCCCceeEEEEEEEcCCCCEEEEeCeeeCCC
Confidence 999999997 4999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcC-CCCeEEEeeCccCCCCCCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHHhhhC
Q psy14495 614 NAEELSEITILAAKKMFSLG-LKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQI 692 (766)
Q Consensus 614 ~~e~L~~ia~~aa~~a~~lG-i~PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~ 692 (766)
|++||++|++|++.++|.|| .+|||||||+||+||+++|++++++||+++++++.|+++||||||+|+|++++++++|+
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~~~~~~~~~vdG~l~~D~Al~~~~a~~K~ 236 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIAKEKRPDLTIDGELQFDAAFVEKVAEKKA 236 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHHhccCCCeEEEecCchhhhCCHHHHHhhC
Confidence 99999999999999999998 55999999999999999999999999999999888999999999999999999999999
Q ss_pred CCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecCCCCCHHHHHHHHHHHH
Q psy14495 693 PNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVRRIVNMTALCV 760 (766)
Q Consensus 693 ~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~sr~~s~~~i~n~ialA~ 760 (766)
|+|+++|+||||||||+++|||+||++++ ++++..+||+|+|+++||+++||++|+++|+|++++++
T Consensus 237 ~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~-~~~~~~~Gpil~G~~~Pv~~~Sr~~s~~~i~~~~al~~ 303 (303)
T TIGR00651 237 PNSPVAGSANVFVFPDLDAGNIGYKIVQR-LGDADAIGPILQGLSKPVNDLSRGCSVEDIVNTGAITA 303 (303)
T ss_pred CCCccCCcCCEEEeCCchHHHHHHHHHHH-hcCCeEEchHHhCCCCCEEECCCCCCHHHHHHHhhhhC
Confidence 99999999999999999999999999999 99999999999999999999999999999999999873
No 13
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=100.00 E-value=5.6e-70 Score=643.71 Aligned_cols=404 Identities=27% Similarity=0.431 Sum_probs=347.5
Q ss_pred cchhhhhhcccCCcCCHHHHHHHHHHH-Hh---ccccccchhhhhhhcccccCCCccccCCCCCChhhHhHHHHHHHHHH
Q psy14495 331 PYIFRGALDSGATTITREMEIAAVHAI-AD---LAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAA 406 (766)
Q Consensus 331 Pgi~~g~l~~~a~~i~~~m~~aAa~aL-A~---l~~~~~~~~~~~~y~~~~~~~g~~~~lP~~~~~~vs~~IA~aVa~~a 406 (766)
|++ .|+++++...++++++..|..+. .. +.++. +.+.++-..+.. .+ . +| ++-..+|.. +...
T Consensus 270 ~~~-a~lIlTgg~~~~~~v~~l~~~a~~~~ipVl~t~~--dT~~ta~~i~~~-~~--~-i~----~~d~~ki~~--~~~~ 336 (684)
T PRK05632 270 PPI-AGLLLTGGYEPDPRIAKLCEGAFETGLPVLSVDT--NTYQTALRLQSF-NG--E-VP----VDDHERIET--VLEL 336 (684)
T ss_pred CCc-eEEEEcCCCCCCHHHHHHHhhcccCCCCEEEecC--CHHHHHHHHHHh-cC--C-CC----CCCHHHHHH--HHHH
Confidence 776 78899999999999775443321 12 22222 223222211111 12 1 12 223344444 4456
Q ss_pred HHcCCCCCCCCCHHHHHHHhh------hhhhccccccchHHHHHHhhhccccEEEEecCCCHHHHHHHHHHHHcCCcEEE
Q psy14495 407 EKSGVATKPIKDIEIYTNHLQ------KFVYRSSAFMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPI 480 (766)
Q Consensus 407 ~~~gvA~~~~~d~~~~~~~~~------~~~~~s~~~m~~L~~~ak~~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~I 480 (766)
+++++ |++.+.+++. .+++|. .|+++++++||+++ |||+||||+|+|+|+|+..+.++|+++||
T Consensus 337 ~~~~v------D~~~l~~~l~~~~~~~~~~~p~-~~~~~l~~~a~~~~---~~i~~~e~~d~~~l~Aa~~~~~~g~~~~i 406 (684)
T PRK05632 337 VASHV------DTDELLERLTATSERSRRLSPP-AFRYQLTERARAAK---KRIVLPEGDEPRTLKAAAICLERGIADCV 406 (684)
T ss_pred HHHhC------CHHHHHHHhccCCCCCCCcCHH-HHHHHHHHHHhcCC---CEEEEeCCCCHHHHHHHHHHHHcCCceEE
Confidence 67777 4444433221 223333 46888999999887 89999999999999999999999999999
Q ss_pred EEcCHHHHHHHHHhcCcCC-CCCCCeEEECCCCCcchhHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCcc
Q psy14495 481 LIGRTKILEQHIKKLRLRI-KPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNAD 559 (766)
Q Consensus 481 LvG~~~~I~~~~~~~~l~l-~~~~~~eIid~~~~~~~~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD 559 (766)
|+|++++|++.++++++++ + +++|||+ +...++|+++|+++|++||+|+++|++.+ ++++|+|++||+.|+||
T Consensus 407 LvG~~~~I~~~~~~~~~~l~~---~~~Ii~~--~~~~~~~~~~~~~lr~~kg~s~~~a~~~~-~~~~~~a~~mv~~G~aD 480 (684)
T PRK05632 407 LLGNPEEIRRVAAAQGVDLPA---GIEIIDP--SEVRERYVAPLVELRKHKGMTEEVAREQL-EDNVYFGTMMLALGEVD 480 (684)
T ss_pred EECCHHHHHHHHHHcCCCccC---CcEEECC--chhHHHHHHHHHHHHhcCCCCHHHHHHHh-hcchHHHHHHHHCCCCC
Confidence 9999999999999999876 5 7999999 44468899999999999999999999999 68999999999999999
Q ss_pred EEEecccCChHHHHHHHHHHhccCCCccceeEEEEEEeCCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcCCCCeEE
Q psy14495 560 GMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLKPRVA 639 (766)
Q Consensus 560 ~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~~~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lGi~PkVA 639 (766)
++|||..+||+++|+++++++|+.||.+++|++++|..+++.++|+|||+|++|++|||++||++++.+||.||++||||
T Consensus 481 ~lvsG~~~Tt~~~l~~~l~~i~~~~g~~~~s~~~~~~~p~~~~~~~D~gvn~~P~~e~l~~ia~~aa~~a~~~GiePkVA 560 (684)
T PRK05632 481 GLVSGAVHTTANTIRPALQLIKTAPGSSLVSSVFFMLLPDQVLVYGDCAVNPDPTAEQLAEIAIQSADSAAAFGIEPRVA 560 (684)
T ss_pred EEecCCCCChHHHHHHHHHHhccCCCCceEEEEEEEEcCCceEEEecCeeeCCCCHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 99999989999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred EeeCccCCCCCCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHH
Q psy14495 640 LLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLL 719 (766)
Q Consensus 640 lLS~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l 719 (766)
|||+||++|.+++++++++||+++++++.|+|.||||||+|+|++++++++|+|+|+++|+||||||||+++||++||++
T Consensus 561 lLs~st~~s~kg~~~~~v~eA~~l~~~~~~~~~vdGp~q~D~A~~~~~~~~k~~~s~vaG~A~vlifP~l~~gN~~yK~~ 640 (684)
T PRK05632 561 MLSYSTGTSGSGADVEKVREATRLARERRPDLLIDGPLQYDAAVDPSVARSKAPNSPVAGRATVFIFPDLNTGNTTYKAV 640 (684)
T ss_pred EEecCCCCCCCCchhhHHHHHHHHHHhhCCCCEEEecchHHHhcCHHHHHhhCCCCccCCcCCEEEcCChhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCccccccccccCCccEEecCCCCCHHHHHHHHHHHHHHHh
Q psy14495 720 KITSGNGVAIGPILLGCSKPIHILTSSATVRRIVNMTALCVIDAL 764 (766)
Q Consensus 720 ~~~~~~~~~~G~iLlGl~~PVv~~sr~~s~~~i~n~ialA~~~a~ 764 (766)
|+ ++++..+||+|+|+++||+++||++++++|+|++++|+++||
T Consensus 641 ~~-~~~~~~~gp~l~G~~~Pv~~~sr~~~~~~i~~~~a~~~~~a~ 684 (684)
T PRK05632 641 QR-SAGAVSIGPMLQGLRKPVNDLSRGALVDDIVNTIAITAIQAQ 684 (684)
T ss_pred HH-hcCCceeccchhccCCcEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 99 999999999999999999999999999999999999999985
No 14
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=5.4e-71 Score=579.05 Aligned_cols=240 Identities=33% Similarity=0.491 Sum_probs=222.6
Q ss_pred CchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHc----CCC----CccEEEEcCCccccCCCCCCCc
Q psy14495 170 QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDL----GFP----LQNIFVTDLAGVLYKGRSELMD 241 (766)
Q Consensus 170 ~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~----g~~----~~~i~~~D~~Glv~~~r~~~l~ 241 (766)
|||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||.++ |++ ++||||+|++|||+++|. +|+
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~-~l~ 79 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRK-DLT 79 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCC-cch
Confidence 79999999999999999999999999999999999999999999875 997 479999999999999995 599
Q ss_pred HHHHHhccccC---CCCHHHHhc--cCcEEEecCC-CCCCCHHHHHhhc---cCcEEEeccCCCC--ccCHhhHhccc-C
Q psy14495 242 SNKARFIKDTT---ARTLSDIIP--NADIFLGLSV-SGVLKKEMVLQMA---KNPIILALANPLP--EILPEDIKSVR-N 309 (766)
Q Consensus 242 ~~k~~~a~~~~---~~~L~e~i~--~~~vliG~S~-~g~ft~evv~~M~---~~PiIfaLsNPt~--E~~pe~a~~~~-~ 309 (766)
++|++||++++ ..+|+|+|+ +||||||+|+ +|+||+|+||+|+ +|||||||||||| |||||||++|+ |
T Consensus 80 ~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G 159 (279)
T cd05312 80 PFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDG 159 (279)
T ss_pred HHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcC
Confidence 99999999755 479999999 7899999997 8999999999999 9999999999998 99999999995 8
Q ss_pred cEEEEcC----------CCCCcccccccccccchhhhhhcccCCcCCHHHHHHHHHHHHhccccccchhhhhhhcccccC
Q psy14495 310 DAIIATG----------RSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMT 379 (766)
Q Consensus 310 ~ai~atG----------~~~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aAa~aLA~l~~~~~~~~~~~~y~~~~~~ 379 (766)
++||||| |+++|||+||+|+|||||||+++++|++|||+|+++||++||+++++++
T Consensus 160 ~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~-------------- 225 (279)
T cd05312 160 RALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEE-------------- 225 (279)
T ss_pred CEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccc--------------
Confidence 9999999 6899999999999999999999999999999999999999999988764
Q ss_pred CCccccCCCCCC-hhhHhHHHHHHHHHHHHcCCCCCCC--CCHHHHHH
Q psy14495 380 FGSECIIPKPFD-PRLMIKIAPAVAIAAEKSGVATKPI--KDIEIYTN 424 (766)
Q Consensus 380 ~g~~~~lP~~~~-~~vs~~IA~aVa~~a~~~gvA~~~~--~d~~~~~~ 424 (766)
+...+|||++++ ++++..||.+|+++|+++|+++.++ +++++|++
T Consensus 226 l~~~~l~P~~~~~r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~ 273 (279)
T cd05312 226 LARGRLYPPLSNIREISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVK 273 (279)
T ss_pred cCCCeeeCCCccHhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Confidence 233479999999 6699999999999999999999644 47888877
No 15
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=6.5e-70 Score=564.29 Aligned_cols=223 Identities=41% Similarity=0.591 Sum_probs=198.6
Q ss_pred CchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHc----CCC----CccEEEEcCCccccCCCCCCCc
Q psy14495 170 QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDL----GFP----LQNIFVTDLAGVLYKGRSELMD 241 (766)
Q Consensus 170 ~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~----g~~----~~~i~~~D~~Glv~~~r~~~l~ 241 (766)
|||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||+++ |++ ++||||+|++|||+++| ++|+
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~ 79 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLN 79 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHS
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCC
Confidence 79999999999999999999999999999999999999999999887 998 48999999999999999 6899
Q ss_pred HHHHHhccccCC----CCHHHHhccC--cEEEecCC-CCCCCHHHHHhhcc---CcEEEeccCCCC--ccCHhhHhccc-
Q psy14495 242 SNKARFIKDTTA----RTLSDIIPNA--DIFLGLSV-SGVLKKEMVLQMAK---NPIILALANPLP--EILPEDIKSVR- 308 (766)
Q Consensus 242 ~~k~~~a~~~~~----~~L~e~i~~~--~vliG~S~-~g~ft~evv~~M~~---~PiIfaLsNPt~--E~~pe~a~~~~- 308 (766)
++|++|||+++. .+|+|+|+++ |||||+|+ +|+||||+||+|++ |||||||||||| ||||||||+|+
T Consensus 80 ~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~ 159 (255)
T PF03949_consen 80 PHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTD 159 (255)
T ss_dssp HHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTT
T ss_pred hhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCC
Confidence 999999997653 4999999985 99999996 99999999999995 999999999998 99999999995
Q ss_pred CcEEEEcC----------CCCCcccccccccccchhhhhhcccCCcCCHHHHHHHHHHHHhccccccchhhhhhhccccc
Q psy14495 309 NDAIIATG----------RSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNM 378 (766)
Q Consensus 309 ~~ai~atG----------~~~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aAa~aLA~l~~~~~~~~~~~~y~~~~~ 378 (766)
|++||||| ++++|||+||+|+|||||||++++++++|||+|+++||++||+++++++.
T Consensus 160 g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~------------ 227 (255)
T PF03949_consen 160 GRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEEL------------ 227 (255)
T ss_dssp SEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHH------------
T ss_pred ceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccC------------
Confidence 89999999 88999999999999999999999999999999999999999999987641
Q ss_pred CCCccccCCCCCChh-hHhHHHHHHHHHHH
Q psy14495 379 TFGSECIIPKPFDPR-LMIKIAPAVAIAAE 407 (766)
Q Consensus 379 ~~g~~~~lP~~~~~~-vs~~IA~aVa~~a~ 407 (766)
.+.++||++++.| ++.+||.+|+++|+
T Consensus 228 --~~~~l~P~~~~ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 228 --APGRLYPPLFDIREVSARVAAAVAKQAI 255 (255)
T ss_dssp --HTTBSS-SGGGHHHHHHHHHHHHHHHHH
T ss_pred --CCCcccCCCCcHhHHHHHHHHHHHHHhC
Confidence 2347999999976 99999999999986
No 16
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=5.2e-68 Score=549.10 Aligned_cols=222 Identities=32% Similarity=0.457 Sum_probs=206.5
Q ss_pred CchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHH----cCCC----CccEEEEcCCccccCCCCCCCc
Q psy14495 170 QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIID----LGFP----LQNIFVTDLAGVLYKGRSELMD 241 (766)
Q Consensus 170 ~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~----~g~~----~~~i~~~D~~Glv~~~r~~~l~ 241 (766)
|||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||.+ .|++ ++|||++|++|||+++|+ +|+
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~-~l~ 79 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRK-ETC 79 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCC-ccC
Confidence 7999999999999999999999999999999999999999999976 4666 579999999999999995 599
Q ss_pred HHHHH---hcccc-CCCCHHHHhc--cCcEEEecCC-CCCCCHHHHHhhc---cCcEEEeccCCCC--ccCHhhHhccc-
Q psy14495 242 SNKAR---FIKDT-TARTLSDIIP--NADIFLGLSV-SGVLKKEMVLQMA---KNPIILALANPLP--EILPEDIKSVR- 308 (766)
Q Consensus 242 ~~k~~---~a~~~-~~~~L~e~i~--~~~vliG~S~-~g~ft~evv~~M~---~~PiIfaLsNPt~--E~~pe~a~~~~- 308 (766)
++|++ |+++. +..+|+|+|+ +||||||+|+ +|+||+|||++|+ +|||||||||||| ||||||||+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~ 159 (254)
T cd00762 80 PNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATE 159 (254)
T ss_pred HHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcC
Confidence 99999 87764 4579999999 7999999998 9999999999999 9999999999998 99999999996
Q ss_pred CcEEEEcCCCCCcc----------cccccccccchhhhhhcccCCcCCHHHHHHHHHHHHhccccccchhhhhhhccccc
Q psy14495 309 NDAIIATGRSDYPN----------QVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNM 378 (766)
Q Consensus 309 ~~ai~atG~~~~p~----------Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aAa~aLA~l~~~~~~~~~~~~y~~~~~ 378 (766)
|++||||||+++|+ |+||+|+|||||||++++++++|||+|+++||++||+++++++
T Consensus 160 G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~------------- 226 (254)
T cd00762 160 GRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEES------------- 226 (254)
T ss_pred CCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhc-------------
Confidence 89999999999999 9999999999999999999999999999999999999988764
Q ss_pred CCCccccCCCCCC-hhhHhHHHHHHHHHH
Q psy14495 379 TFGSECIIPKPFD-PRLMIKIAPAVAIAA 406 (766)
Q Consensus 379 ~~g~~~~lP~~~~-~~vs~~IA~aVa~~a 406 (766)
+...++||++++ ++++.+||.+|+++|
T Consensus 227 -l~~~~i~P~~~~ir~vs~~VA~aVa~~a 254 (254)
T cd00762 227 -LKPGRLYPPLFDIQEVSLNIAVAVAKYA 254 (254)
T ss_pred -CCCCceeCCcchhhhHHHHHHHHHHHhC
Confidence 234579999999 889999999999864
No 17
>PRK11890 phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.7e-61 Score=514.22 Aligned_cols=289 Identities=22% Similarity=0.273 Sum_probs=262.9
Q ss_pred ccchHHHHHHhhhccccEEEEecCCCHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcc
Q psy14495 436 FMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQ 515 (766)
Q Consensus 436 ~m~~L~~~ak~~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~ 515 (766)
-++++++++++.++ +||+++.++|+++|+|+.++.++|+++|||||++++|++.+++.|++++ ++||||++++.
T Consensus 9 ~~~~l~~~~~~~~~--~~vava~a~D~~vl~Aa~~a~~~gl~~piLvG~~~~I~~~a~~~g~dl~---~~eII~~~~~~- 82 (312)
T PRK11890 9 KYERLIARARTLPP--LPTAVAHPCDESSLRGAVEAAQLGLITPILVGPRARIEAVAAECGLDLS---GYEIVDAPHSH- 82 (312)
T ss_pred CHHHHHHHHhcCCC--ceEEEECCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCCcC---CCEEECCCChH-
Confidence 36789999998776 8999999999999999999999999999999999999999999999987 89999997764
Q ss_pred hhHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEE
Q psy14495 516 YKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNL 595 (766)
Q Consensus 516 ~~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~ 595 (766)
+.|++ |++||+.|+||++|||.++|| ++|+++++..+..++.+++||+++|
T Consensus 83 -------------------~~a~~---------av~mV~~G~AD~lmkG~i~Tt-~~lra~l~~~~gl~~~~~lS~v~i~ 133 (312)
T PRK11890 83 -------------------AAAAK---------AVELVREGEAEALMKGSLHTD-ELMSAVVARDTGLRTERRISHVFVM 133 (312)
T ss_pred -------------------HHHHH---------HHHHHHcCCCCEEecCCcccH-HHHHHHHhHhcCCCCCCeEEEEEEE
Confidence 23332 899999999999999999986 9999776655445566799999999
Q ss_pred Ee--CCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHHHc----cC
Q psy14495 596 IL--MDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQK----QM 668 (766)
Q Consensus 596 ~~--~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~llk~----~~ 668 (766)
+. +++++|++|||+|++||++||++|++++++++|.||++ |||||||+||+|++++|++.+ |.++.+. +.
T Consensus 134 ~~p~~~~~l~~tD~~vn~~P~~eq~a~I~~~a~~~a~~lG~~~PkVA~LS~se~~~~~~~~t~~---aa~L~k~~~~~~~ 210 (312)
T PRK11890 134 DVPGYPKPLIITDAAVNIAPTLEDKADIVQNAIDLAHALGFDEPRVAILSAVETVNPKIPSTLD---AAALCKMADRGQI 210 (312)
T ss_pred EecCCCcEEEEecCeecCCcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeeecCCCCCCchHHH---HHHHHHHHhcCcC
Confidence 64 67899999999999999999999999999999999995 999999999999999988874 5455542 47
Q ss_pred CCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecCCCCC
Q psy14495 669 PELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSAT 748 (766)
Q Consensus 669 ~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~sr~~s 748 (766)
|+|.||||||+|+|++++++++|+|+|+++|+||||||||+++|||+||++++ ++++..+| +++|+++||+++||++|
T Consensus 211 ~~~~vdGplq~D~A~~~~~a~~K~~~s~vaG~AnvLIfPnl~agNi~yK~l~~-~~~~~~~G-~l~G~~~PV~~~SR~~s 288 (312)
T PRK11890 211 TGAILDGPLAFDNAISPEAARIKGIVSPVAGDADILVVPDLEAGNMLAKQLTF-LAGADAAG-IVLGARVPIILTSRADS 288 (312)
T ss_pred CCcEEEcCccHHHhCCHHHHHhhCCCCCCCCcCCEEEeCCcHHHHHHHHHHHH-hcCCeEEe-EeecCCCceEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999 99999999 66999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14495 749 VRRIVNMTALCVIDAL 764 (766)
Q Consensus 749 ~~~i~n~ialA~~~a~ 764 (766)
+++|+|++++|++.++
T Consensus 289 ~~~i~~siala~~~~~ 304 (312)
T PRK11890 289 VRTRLASCAVAALVAH 304 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999875
No 18
>PRK05805 phosphate butyryltransferase; Validated
Probab=100.00 E-value=3.3e-60 Score=509.52 Aligned_cols=292 Identities=23% Similarity=0.355 Sum_probs=262.2
Q ss_pred ccchHHHHHHhhhccccEEEEecCCCHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcc
Q psy14495 436 FMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQ 515 (766)
Q Consensus 436 ~m~~L~~~ak~~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~ 515 (766)
+++++++++|+.++ +||+|+||+|+++|+|++++.++++++|+|||++++|++.+++++++.+ +++|+|+++...
T Consensus 4 ~~~~l~~~a~~~~~--~ri~~~~~~d~~vl~Aa~~~~~~~~~~~iLVGd~~~I~~~l~~~~l~~~---~ieIi~a~d~i~ 78 (301)
T PRK05805 4 SFDEILSKAKEQPP--KTISVAVAQDEPVLEAVKEAKELGIANAILVGDKEKIKEIAKEIDMDLE---DFEIIDEKDNRK 78 (301)
T ss_pred hHHHHHHHHhcCCC--CeEEEeCCCCHHHHHHHHHHHHCCCceEEEECCHHHHHHHHHHcCCCcc---CcEEECCCCcHH
Confidence 47789999998433 8999999999999999999999999999999999999999999887665 799999988751
Q ss_pred hhHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHH-HHHHhccCCCccceeEEEE
Q psy14495 516 YKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNY-IDQIIGKKNKTNIYAAMSN 594 (766)
Q Consensus 516 ~~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~-~~~iig~~~g~~~~s~~~i 594 (766)
. .++|++||++|+||++|+|.++| +++|++ +.+++|..+|. ++|++++
T Consensus 79 --------------------a---------~~~A~~lVk~GeADa~v~G~~~t-~~~lr~~l~~~~g~~~~~-~~s~~~~ 127 (301)
T PRK05805 79 --------------------A---------ALKAVELVSSGKADMVMKGLVDT-ANFLRAVLNKEIGLRTGK-TMSHVAV 127 (301)
T ss_pred --------------------H---------HHHHHHHHHCCCCCEEecCccCH-HHHHHHHHHHHhCCCCCC-eEEEEEE
Confidence 1 13699999999999999999874 799996 45599999997 9999999
Q ss_pred EEe--CCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHH-HccCCC
Q psy14495 595 LIL--MDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLK-PRVALLSNSNFGSNNNISAHKMRTALKLI-QKQMPE 670 (766)
Q Consensus 595 ~~~--~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~ll-k~~~~~ 670 (766)
|.. +++.+||+|||+|++||++||++|++++++++|.||++ |||||||+||+++++++++.++.+..++. +++.|+
T Consensus 128 ~~~p~~~~~l~~tD~~vn~~P~~~q~~~I~~~a~~~~~~lG~e~PkVA~LS~s~~~~~~~~~t~~a~~l~~~~~~~~~~~ 207 (301)
T PRK05805 128 FEVPKYDRLLFLTDAAFNIAPDLKEKIDIINNAVTVAHAIGIENPKVAPICAVEVVNPKMPATLDAALLSKMSDRGQIKG 207 (301)
T ss_pred EEecCCCceEEEECCEeccCcCHHHHHHHHHHHHHHHHHcCCCCCeEEEEecccCCCCCChHHHHHHHHHHHHhhCcCCC
Confidence 876 78899999999999999999999999999999999998 99999999999999998887542222222 135699
Q ss_pred ceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecCCCCCHH
Q psy14495 671 LEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVR 750 (766)
Q Consensus 671 ~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~sr~~s~~ 750 (766)
|.||||||+|+|++++++++|+|+|+++|+||||||||+++|||+||++++ ++++. +||+|+|+++||+++||++|++
T Consensus 208 ~~vdG~l~~D~A~~~~~a~~k~~~s~v~G~Anvli~Pnl~agNi~yK~l~~-~~~~~-~~gil~G~~~Pv~~~SR~~s~~ 285 (301)
T PRK05805 208 CIVDGPLALDNALSEEAAKHKGIDGPVAGNADILLVPNIEAGNVMYKTLTY-FADCK-NGGLLVGTSAPVVLTSRADSHE 285 (301)
T ss_pred eEEEechHHHHhcCHHHHHHhCCCCCCCCcCCEEEeCChHHHHHHHHHHHH-hcCCe-EEeeeecCCCCEEECCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999 99876 6889999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy14495 751 RIVNMTALCVIDALS 765 (766)
Q Consensus 751 ~i~n~ialA~~~a~~ 765 (766)
+++|++++|++++++
T Consensus 286 ~i~~~~ala~~~~~~ 300 (301)
T PRK05805 286 TKLNSIALAALVAAK 300 (301)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999998864
No 19
>PRK07742 phosphate butyryltransferase; Validated
Probab=100.00 E-value=5.3e-60 Score=508.02 Aligned_cols=285 Identities=22% Similarity=0.315 Sum_probs=250.2
Q ss_pred cchHHHHHHhhhccccEEEEecCCCHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCc-CCCCCCCeEEECCCCCcc
Q psy14495 437 MNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRL-RIKPGIHFEIIDPDFNKQ 515 (766)
Q Consensus 437 m~~L~~~ak~~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l-~l~~~~~~eIid~~~~~~ 515 (766)
++++++++++..+ +||+|+||+|+++|+|+.++.++|+++|||||++++|++.++++++ +.+ +++|||+++..
T Consensus 3 ~~~l~~~~~~~~~--~ri~~~~~~d~~vl~Aa~~a~~e~~~~~iLvG~~~~I~~~~~~~~l~~~~---~~~Ii~~~~~~- 76 (299)
T PRK07742 3 LEHLIDQAAGQPK--KTVAVAVAEDEEVIEAVAKAIELQLARFRLYGNQEKIMGMLQEHGLQTSE---HIEIIHAQSSA- 76 (299)
T ss_pred HHHHHHHHhcCCC--CeEEEeCCCCHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHCCCCCCC---CcEEECCCCHH-
Confidence 5678888985443 8999999999999999999999999999999999999999999887 554 79999997752
Q ss_pred hhHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEE--
Q psy14495 516 YKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMS-- 593 (766)
Q Consensus 516 ~~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~-- 593 (766)
+ +++.|++||++|+||++|||.. ||+.++ +.++++.+|+++++.++
T Consensus 77 -------------------~---------s~~~a~~lV~~G~aD~lvsG~~-tta~~~---~~~l~~~~Gi~~~~~~s~v 124 (299)
T PRK07742 77 -------------------E---------AAELAVKAVRNGEADVLMKGNV-PTANIL---KAVLNKEWGLRKGSVLSHV 124 (299)
T ss_pred -------------------H---------HHHHHHHHHHCCCCCEEEECCc-CHHHHH---HHHhccccCCCCCCcccce
Confidence 1 2335999999999999999975 334444 55666667776655555
Q ss_pred ---EEEeCCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHHHc---
Q psy14495 594 ---NLILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQK--- 666 (766)
Q Consensus 594 ---i~~~~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~llk~--- 666 (766)
.+|++++.++|+|||+|++||++||++||+||+.++|.||++ |||||||++|+.+ |+.+.++||+++.+.
T Consensus 125 ~~~~~P~~~~~~~l~D~g~n~~p~~e~l~~ia~~a~~~a~~lGie~PkVAlLs~gee~~---k~~~~~~eA~~l~~~~~~ 201 (299)
T PRK07742 125 AVFEVPNYDRLIFVTDAAMNIAPDLEQKAAIIQNAVEVARAIGIDLPKVAPLAAVEVVN---PAMQATIDAAALTQMNRR 201 (299)
T ss_pred ehhheecCCCcEEEEeceecCCcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEecccCCC---CCCHHHHHHHHHHHHHhh
Confidence 667888899999999999999999999999999999999998 9999999988655 455566688777753
Q ss_pred -cCCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecCC
Q psy14495 667 -QMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTS 745 (766)
Q Consensus 667 -~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~sr 745 (766)
+.|+|.||||||+|+|++++++++|+|+|+++|+||||||||+++|||+||++++ ++++ .+||+|+|+++||+++||
T Consensus 202 ~~~~~~~vdG~l~~D~A~~~~~a~~k~~~s~v~G~Anvli~Pnl~agNi~~K~l~~-~~~~-~~g~il~G~~~Pv~~~SR 279 (299)
T PRK07742 202 GQIKNCVVDGPLALDNAVSQIAAEHKGIVSDVAGKADILLVPTIEAGNVLYKSLVY-FADA-KVGAMIAGAKAPIVLTSR 279 (299)
T ss_pred CCCCCeEEeechHHHHhcCHHHHHHhCCCCCCCCcCCEEEeCChHHHHHHHHHHHH-hcCC-cEeceeeccCCCEEeCCC
Confidence 4589999999999999999999999999999999999999999999999999999 9988 499999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q psy14495 746 SATVRRIVNMTALCVIDAL 764 (766)
Q Consensus 746 ~~s~~~i~n~ialA~~~a~ 764 (766)
++|+++++|++++|+++++
T Consensus 280 ~~s~~~~~~~~ala~~~~~ 298 (299)
T PRK07742 280 ADSAETKLYSLALAVCTAS 298 (299)
T ss_pred CCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999875
No 20
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=100.00 E-value=8.3e-60 Score=505.41 Aligned_cols=283 Identities=22% Similarity=0.360 Sum_probs=249.5
Q ss_pred chHHHHHHhhhccccEEEEecCCCHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcchh
Q psy14495 438 NPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYK 517 (766)
Q Consensus 438 ~~L~~~ak~~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~ 517 (766)
+++++++|+..+ +||+|+||+|+++|+|+..+.++|+++|||||++++|++.+++.+++.+ +++|||+++...
T Consensus 2 ~~l~~~a~~~~~--~ri~~~~~~d~~vl~A~~~~~~~~~~~~iLvG~~~~I~~~~~~~~l~~~---~ieIi~~~~~~~-- 74 (294)
T TIGR02706 2 EELIEKVKECPM--KTVAVAVAQDEPVLEAVKEAKEHGIARAILVGDEEKINEIAKKIGMNLD---DVEIVNAPSPKK-- 74 (294)
T ss_pred HHHHHHHhcCCC--CeEEEeCCCCHHHHHHHHHHHHCCCceEEEECCHHHHHHHHHHcCCCcc---CcEEECCCCcHH--
Confidence 578899998643 8999999999999999999999999999999999999999999988765 899999988751
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccc---eeEEEE
Q psy14495 518 DYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNI---YAAMSN 594 (766)
Q Consensus 518 ~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~---~s~~~i 594 (766)
+++.|++||++|+||++|||.++ |+++|+. ++++.+|+++ +|++++
T Consensus 75 ---------------------------s~~~a~~lv~~G~aD~~vsg~~~-T~a~l~~---~l~~~~Gi~~~~~~s~~~~ 123 (294)
T TIGR02706 75 ---------------------------AALLAVRLVSTGKADMLMKGLVD-TATFLRS---VLNKEVGLRTGKVLSHVAV 123 (294)
T ss_pred ---------------------------HHHHHHHHHHCCCCCEEEeCCcC-HHHHHHH---HhhhccCCCCCCcceeeEE
Confidence 23459999999999999999765 6898854 4444455544 455444
Q ss_pred E--EeCCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHHHc----c
Q psy14495 595 L--ILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQK----Q 667 (766)
Q Consensus 595 ~--~~~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~llk~----~ 667 (766)
| |++++.++++|||+|++|+++||++||+||+.|+|.||++ |||||||+||+. +|+.+.++||+++++. +
T Consensus 124 ~~~P~~~~~~~l~D~g~n~~p~~e~l~~ia~~a~~~ar~lGie~PrVAlLs~g~e~---~kg~~~~~eA~~L~~~~~~~~ 200 (294)
T TIGR02706 124 FEVPGFDRLLFLTDAAFNTYPELKDKVQIINNAVKVAHAIGIDVPKVAPLAAVEVV---NPKMPATVDAAALAKMSDRGQ 200 (294)
T ss_pred EEecCCCCcEEEEeCeecCCcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCcccC---CCCChHHHHHHHHHHHHhcCC
Confidence 4 5668899999999999999999999999999999999998 999999998765 5566667789988873 3
Q ss_pred CCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecCCCC
Q psy14495 668 MPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSA 747 (766)
Q Consensus 668 ~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~sr~~ 747 (766)
+++|.||||||+|+|++++++++|+++|+++|+||||||||+++|||+||++++ ++++. +||+|+|+++||+++||++
T Consensus 201 ~~~~~vdG~l~~D~A~~~~~a~~k~~~s~v~g~Anvli~P~l~agNi~~K~~~~-~~~~~-~g~il~G~~~Pv~~~sR~~ 278 (294)
T TIGR02706 201 IKGCIVDGPLALDNAISEEAAKHKGIEGEVAGKADILLVPDIEAGNVLYKTLTY-FAKSK-NGGILVGTKAPVVLTSRAD 278 (294)
T ss_pred CCCeEEEechHHHHhcCHHHHHHhCCCCCCCCcCCEEEeCChHHHHHHHHHHHH-hcCCc-EeceeecCCCCeEECCCCC
Confidence 479999999999999999999999999999999999999999999999999999 98875 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy14495 748 TVRRIVNMTALCVIDA 763 (766)
Q Consensus 748 s~~~i~n~ialA~~~a 763 (766)
|+++++|++++|++++
T Consensus 279 s~~~~~~~~ala~~~~ 294 (294)
T TIGR02706 279 SFETKLNSIALAALVA 294 (294)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999864
No 21
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=100.00 E-value=5.3e-56 Score=503.72 Aligned_cols=288 Identities=20% Similarity=0.253 Sum_probs=257.9
Q ss_pred cchHHHHHHhhhccccEEEEecCCCHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcch
Q psy14495 437 MNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQY 516 (766)
Q Consensus 437 m~~L~~~ak~~~~~~krIv~~e~~d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~ 516 (766)
+++++++++++++ +|++|++++|+++|+|+.++.++|+++|||||++++|++.+++.+++++ +++|||++++.
T Consensus 164 ~~~l~~~~~~~~~--~~~~v~~~ed~~vl~Aa~~a~~~~~~~~iLvG~~~~I~~~~~~~g~~~~---~~eIi~~~~~~-- 236 (466)
T PRK08190 164 YERLLAAARGLPP--LRTAVVHPCDAESLRGALEAAEAGLIEPVLVGPEAKIRAAAEEAGLDLS---GVRIVDVPHSH-- 236 (466)
T ss_pred HHHHHHHHhcCCC--CceEEEcCCCHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHHHcCCCcC---CCEEECCCCCH--
Confidence 6789999998875 8999999999999999999999999999999999999999999998876 89999998752
Q ss_pred hHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEEE
Q psy14495 517 KDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLI 596 (766)
Q Consensus 517 ~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~ 596 (766)
+.+ ..|++||++|+||++|||..+| +++|+.+++..+-.++.+++|+++++.
T Consensus 237 ------------------~s~---------~~a~~lv~~G~aD~~v~G~~~T-~~~l~~~l~~~~g~~~~~~ls~~~~~~ 288 (466)
T PRK08190 237 ------------------AAA---------ARAVALARAGEVEALMKGSLHT-DELLSAVVARDSGLRTERRISHVFAMD 288 (466)
T ss_pred ------------------HHH---------HHHHHHHHCCCCCEEEeCCCCh-HHHHHHHhchhcCCCCCCcccEEEEEE
Confidence 122 3499999999999999998665 899997666554466667888877765
Q ss_pred --eCCCeEEEEeccccCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHHHcc----CC
Q psy14495 597 --LMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQKQ----MP 669 (766)
Q Consensus 597 --~~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~----~~ 669 (766)
++++.++|+|||+|++||++||++||+|++.++|.||++ |||||||+||++++..+ .++||++|++.. .|
T Consensus 289 ~p~~~~~~~~~D~gvn~~P~~e~l~~ia~~a~~~ar~lGie~PkVAlLs~s~~~~~~~~---~~~eA~~L~~~~~~~~~~ 365 (466)
T PRK08190 289 VPTYPRPLLITDAAINIAPTLEDKRDIVQNAIDLAHALGVEEPKVAILSAVETVNPKMP---STLDAAALCKMADRGQIT 365 (466)
T ss_pred ecCCCCeEEEEcceeccCcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeceecCCCCCh---hHHHHHHHHHHHhcCCCC
Confidence 467899999999999999999999999999999999996 99999999998765554 456898888643 68
Q ss_pred CceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecCCCCCH
Q psy14495 670 ELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATV 749 (766)
Q Consensus 670 ~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~sr~~s~ 749 (766)
+|.||||||+|+|++++++++|+|+|+++|+||||||||+++|||+||++++ |+++..+| +++|+++||+++||++|+
T Consensus 366 ~~~vdG~l~~D~A~~~~~a~~k~~~s~v~G~Anvli~P~l~agNi~~K~~~~-~~~~~~~G-~i~G~~~Pv~~~sR~~s~ 443 (466)
T PRK08190 366 GGIVDGPLAFDNAISAEAARTKGIVSPVAGQADILVVPDLEAGNMLAKQLTY-LAGADAAG-IVLGARVPIILTSRADSL 443 (466)
T ss_pred CcEEecCchHhhhcCHHHHHhhCCCCCCCCcCCEEEcCChHHhHHHHHHHHH-hcCCcEEe-EEecccCceEeCCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999 99999999 566999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy14495 750 RRIVNMTALCVIDAL 764 (766)
Q Consensus 750 ~~i~n~ialA~~~a~ 764 (766)
++|+|++++|++.+.
T Consensus 444 ~~~~~~~ala~~~~~ 458 (466)
T PRK08190 444 RARLASCALALLVAH 458 (466)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 22
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=100.00 E-value=7.2e-56 Score=463.76 Aligned_cols=266 Identities=20% Similarity=0.268 Sum_probs=241.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHcC--CcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcchhHHHHHHHHHHccC
Q psy14495 453 RIIYSEGEEEKILRAIQVVIDEN--LAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRK 530 (766)
Q Consensus 453 rIv~~e~~d~~vL~Aa~~a~~eg--~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~~~lr~~K 530 (766)
||+++.++|+.+|+|+.++.++| +++|||||++ .+++++ ..++|||.++..
T Consensus 2 ~~ava~a~d~~~l~av~~a~~~g~~~~~~ilvg~~---------~~~~~~--~~~~ii~~~~~~---------------- 54 (271)
T TIGR02709 2 TVSIAGGSQPEILQLVKKALKEAEQPLQFIVFDTN---------ENLDTE--NLWKYVHCSDEA---------------- 54 (271)
T ss_pred EEEEEecCCHHHHHHHHHHHHcCCceeEEEEEcCc---------ccCCcc--cCeeEEECCChH----------------
Confidence 78999999999999999999999 6999999993 255543 148999997754
Q ss_pred CCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEEEeC-CCeEEEEeccc
Q psy14495 531 GMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILM-DRQLMLVDTHI 609 (766)
Q Consensus 531 g~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~~~-~~~~~l~D~g~ 609 (766)
+.|++ |++||++|+||++|+|.++|| ++|+++++..+.+++.+++||+++|+.+ ++++||+|||+
T Consensus 55 ----~aa~~---------av~lv~~G~aD~lmkG~i~T~-~~lravl~~~~gl~~~~~~S~v~i~~~p~~~~l~~tD~~v 120 (271)
T TIGR02709 55 ----AVAQE---------AVSLVATGQAQILLKGIIQTH-TLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCAM 120 (271)
T ss_pred ----HHHHH---------HHHHHHCCCCCEEEcCCcCcH-HHHHHHHHHHcCCCCCCeeEEEEEEEecCCCEEEEECCCc
Confidence 45554 999999999999999999875 9999766555445666799999999864 68999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHH
Q psy14495 610 NENPNAEELSEITILAAKKMFSLGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELL 688 (766)
Q Consensus 610 Ni~P~~e~L~~ia~~aa~~a~~lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a 688 (766)
|++||++||++|++++++++|.||++ |||||||+||.+|+++|++.+++++.+++++. ++|.+|||||+|+|++++++
T Consensus 121 n~~P~~eqk~~I~~nA~~~ar~lGie~PkVAlLS~se~~s~~~~st~~a~~l~~~~~~~-~~~~vdGpl~~D~Al~~e~a 199 (271)
T TIGR02709 121 NIAPTQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFNDQ-QEATVFGPLSLDLATSEEAV 199 (271)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHcCCCCCeEEEEecccCCCCCCchHHHHHHHHHHHHhC-CCCEEEecCchhhhcCHHHH
Confidence 99999999999999999999999995 99999999999999999999999999999876 89999999999999999999
Q ss_pred hhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecCCCCCHHHHHHHHHHHHHH
Q psy14495 689 HKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVRRIVNMTALCVID 762 (766)
Q Consensus 689 ~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~sr~~s~~~i~n~ialA~~~ 762 (766)
++|+++|+++|+||||||||+++|||+||++++ +++.. .||+|+|+++||+++||++|.+++++++++|..|
T Consensus 200 ~~K~~~s~vaG~AniLI~PnleaGNi~yK~l~~-~~~~~-~ggil~G~~~PV~~~SR~~s~~~~~~siala~~~ 271 (271)
T TIGR02709 200 AHKRYSGPIMGDADILVVPTIDVGNCLYKSLTL-FGHAK-VGGTIVGTKVPVVLTSRSDSTESKFHSLRFAMRQ 271 (271)
T ss_pred HhhCCCCCCCCcCCEEEcCChHHHHHHHHHHHH-hcCCe-EEcccccCCCCEEECCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999 98864 7889999999999999999999999999999754
No 23
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=8.9e-53 Score=435.48 Aligned_cols=222 Identities=54% Similarity=0.842 Sum_probs=205.9
Q ss_pred CchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc
Q psy14495 170 QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK 249 (766)
Q Consensus 170 ~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~ 249 (766)
|||||+|++||++++++..|.+++|+|+||+|||+||.+||++|.+.|+++++||++|++|+++.+|.++|.++|++|++
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~ 80 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK 80 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999889999999999999996669999999998
Q ss_pred ccC---C-CCHHHHhccCcEEEecCCCCCCCHHHHHhhccCcEEEeccCCCCccCHhhHhcccCcEEEEcCCCCCccccc
Q psy14495 250 DTT---A-RTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVN 325 (766)
Q Consensus 250 ~~~---~-~~L~e~i~~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~~~~~ai~atG~~~~p~Q~N 325 (766)
..+ . .+|.|+++++|+|||+|.+|.||+++++.|+++||||+||||++||++++|++|+. .||+||++++|+|+|
T Consensus 81 ~~~~~~~~~~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~lsnP~~e~~~~~A~~~ga-~i~a~G~~~~~~Q~n 159 (226)
T cd05311 81 ETNPEKTGGTLKEALKGADVFIGVSRPGVVKKEMIKKMAKDPIVFALANPVPEIWPEEAKEAGA-DIVATGRSDFPNQVN 159 (226)
T ss_pred HhccCcccCCHHHHHhcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeCCCCCcCCHHHHHHcCC-cEEEeCCCCCccccc
Confidence 642 2 47889999999999999999999999999999999999999999999999999932 399999999999999
Q ss_pred ccccccchhhhhhcccCCcCCHHHHHHHHHHHHhccccccchhhhhhhcccccCCCccccCCCCCChhhHhHHHHHHHHH
Q psy14495 326 NVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIA 405 (766)
Q Consensus 326 N~~~FPgi~~g~l~~~a~~i~~~m~~aAa~aLA~l~~~~~~~~~~~~y~~~~~~~g~~~~lP~~~~~~vs~~IA~aVa~~ 405 (766)
|+|+|||||||++++++++|||+||++||++||+++++++ +.+.++||++++++++..||.+|+++
T Consensus 160 n~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~--------------~~~~~~~P~~~~~~~~~~va~~v~~~ 225 (226)
T cd05311 160 NVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEV--------------LGEEYIIPTPFDPRVVPRVATAVAKA 225 (226)
T ss_pred eeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccc--------------cCCCcccCCCCchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988754 13347899999988999999999986
Q ss_pred H
Q psy14495 406 A 406 (766)
Q Consensus 406 a 406 (766)
|
T Consensus 226 a 226 (226)
T cd05311 226 A 226 (226)
T ss_pred C
Confidence 4
No 24
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=100.00 E-value=3.7e-48 Score=420.69 Aligned_cols=268 Identities=17% Similarity=0.184 Sum_probs=245.6
Q ss_pred CHHHHHHHHHHHHcC-CcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcchhHHHHHHHHHHccCCCCHHHHHH
Q psy14495 461 EEKILRAIQVVIDEN-LAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQL 539 (766)
Q Consensus 461 d~~vL~Aa~~a~~eg-~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~~~lr~~Kg~s~~~A~~ 539 (766)
-..+++|+.++.+++ +++|+|||++++|++.+++.+++.+ +++|||+++...|+ .+++.++|+||
T Consensus 15 p~~vl~aa~~a~~~~~~~~~iLvG~~~~I~~~l~~~~~~~~---~~~Iv~~~~~i~~~--e~p~~alR~kk--------- 80 (334)
T PRK05331 15 PEVVVPGALQALKEHPDLEIILVGDEEKIKPLLAKKPDLKE---RIEIVHASEVIGMD--DKPSQALRRKK--------- 80 (334)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHhcCCCcC---CcEEEeCCCccccc--ccHHHHHHhcC---------
Confidence 467899999999998 8999999999999999999888765 79999999988765 35677888877
Q ss_pred HhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEEEe-CCCeEEEEeccccCCCCHHHH
Q psy14495 540 KMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLIL-MDRQLMLVDTHINENPNAEEL 618 (766)
Q Consensus 540 ~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~~-~~~~~~l~D~g~Ni~P~~e~L 618 (766)
++||++|++||++|+||++||| ++|+++|+.+++++|+.||++||+++++||+ .++.++|+|||+|++|+++||
T Consensus 81 ---~ssm~~A~~lV~~G~AD~~vSg--g~Tga~l~~a~~ilg~~~Gi~r~a~~~~~p~~~~~~~~l~D~gan~~p~~e~L 155 (334)
T PRK05331 81 ---DSSMRVALELVKEGEADACVSA--GNTGALMAAALFVLGRLPGIDRPALAAILPTVKGGGTVLLDLGANVDCKPEHL 155 (334)
T ss_pred ---CChHHHHHHHHhCCCCCEEEeC--CcHHHHHHHHHHHcccCCCCCceEEEEEeeecCCCeEEEEeCeEcCCCCHHHH
Confidence 4789999999999999999999 6999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHH-cCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHHhhhCCCCc
Q psy14495 619 SEITILAAKKMFS-LGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSK 696 (766)
Q Consensus 619 ~~ia~~aa~~a~~-lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~ 696 (766)
+|||+|++.++|. ||++ |||||||+ |++.+|+.++++||++|++++.++++|+|++| +++.
T Consensus 156 ~~~A~~~a~~a~~~~Gi~~PrVAlLn~---Gse~~kg~~~~~eA~~Ll~~~~~~l~f~G~ie--------------~~dl 218 (334)
T PRK05331 156 VQFAVMGSVYAEAVLGIENPRVGLLNI---GEEEIKGNELVKEAYELLKAADSSINFIGNVE--------------GRDI 218 (334)
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEeC---CCCCCCCCHHHHHHHHHHHccCCCceEEeecc--------------CCCc
Confidence 9999999999987 8997 99999997 67788999999999999998778999999997 4588
Q ss_pred cCCcccEEEeCCcchhHHHHHHHHh-----------------------------------hcCCccccccccccCCccEE
Q psy14495 697 LTGDANLLVLPNIESANIAYNLLKI-----------------------------------TSGNGVAIGPILLGCSKPIH 741 (766)
Q Consensus 697 vaG~AdVLV~Pnl~aGNi~~K~l~~-----------------------------------~~~~~~~~G~iLlGl~~PVv 741 (766)
+.|.+||+|+ |+++||+++|+++. .|++.+++|++|+|+++||+
T Consensus 219 ~~g~~DVvV~-DGftGNv~LK~~EG~~~~~~~~lk~~~~~~~~~k~~~~l~~~~l~~~~~~~d~~~~gGa~llG~~g~vi 297 (334)
T PRK05331 219 LKGTADVVVC-DGFVGNVALKTSEGTAKMILSLLKEELKSSLLSKLGALLLKPALKRLKKKLDPREYGGAVLLGLNGIVI 297 (334)
T ss_pred CCCCCCEEEE-CCchhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCCccccCCeeEccCCceEE
Confidence 9999999999 68999999999853 17788999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhc
Q psy14495 742 ILTSSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 742 ~~sr~~s~~~i~n~ialA~~~a~~ 765 (766)
++||++++.++.|+|..|...+++
T Consensus 298 k~HG~s~~~a~~~ai~~a~~~~~~ 321 (334)
T PRK05331 298 KSHGSSDAKAFANAIRQAKEAVEN 321 (334)
T ss_pred EECCCCChHHHHHHHHHHHHHHHh
Confidence 999999999999999999987764
No 25
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=100.00 E-value=2.9e-46 Score=403.42 Aligned_cols=263 Identities=18% Similarity=0.257 Sum_probs=237.8
Q ss_pred HHHHHHHHH-HHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcchhHHHHHHHHHHccCCCCHHHHHHH
Q psy14495 462 EKILRAIQV-VIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLK 540 (766)
Q Consensus 462 ~~vL~Aa~~-a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~~~lr~~Kg~s~~~A~~~ 540 (766)
..+++|+.+ +.++++++|+|||++++|++.+++++ . +++|||+++...|++ +++.++|++|
T Consensus 7 ~~vv~aa~~a~~~~~~~~~iLvGd~~~I~~~l~~~~---~---~i~Ii~a~~~i~m~e--~p~~alR~kk---------- 68 (322)
T TIGR00182 7 SEVIDGVLKYASANQDLHIILVGDKDAIEPHLDKLP---K---NITIIHAQSVIEMTD--TPVRAIRRKV---------- 68 (322)
T ss_pred HHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHhCC---C---CcEEECCCCccccCc--chHHHHHhcC----------
Confidence 467899998 55668899999999999999998864 2 699999999998876 7788888877
Q ss_pred hhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEEEe-CCCeEEEEeccccCCCCHHHHH
Q psy14495 541 MRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLIL-MDRQLMLVDTHINENPNAEELS 619 (766)
Q Consensus 541 ~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~~-~~~~~~l~D~g~Ni~P~~e~L~ 619 (766)
++|+++|++||++|+||++||| |||+++|+.+++++|+.||++||+++++||+ .++.++|+|||+|++|+++||+
T Consensus 69 --~ss~~~A~~lVk~G~ADa~VSg--g~Tga~m~aal~iig~~~Gv~rpa~~~~lp~~~~~~~~l~D~GaN~~p~~e~L~ 144 (322)
T TIGR00182 69 --NSSMQLAMNLVKEGRADAVISA--GNSGALMGLALLRLGRIKGIDRPALMTLLPTVNGDWFVLLDVGANVDCKPKYLV 144 (322)
T ss_pred --CCHHHHHHHHHHCCCCCEEEeC--CcHHHHHHHHHHHhcccCCCCcceEEEEEEecCCCEEEEEeCcccCCCCHHHHH
Confidence 5899999999999999999999 6999999999999999999999999999998 4667999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHHhhhCCCCcc
Q psy14495 620 EITILAAKKMFS-LGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKL 697 (766)
Q Consensus 620 ~ia~~aa~~a~~-lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~v 697 (766)
+||++++.|++. ||++ |||||||+ |++.+|+++.++||++++++ .++++|+|+++. ++.+
T Consensus 145 q~Aim~a~~a~~~lGi~~PrVALLn~---G~e~~kg~~~v~eA~~Ll~~-~~~~~f~G~ve~--------------~di~ 206 (322)
T TIGR00182 145 QFALMGSVYSKKVLGVDSPRVGLLNI---GTEDNKGNDLHKETFQLLKE-DPNINFIGNVEA--------------RDLL 206 (322)
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEEeC---CCCCCCCCHHHHHHHHHHhc-CCCceEEeEeec--------------cccc
Confidence 999999999998 8986 99999997 66789999999999999976 357999999974 5888
Q ss_pred CCcccEEEeCCcchhHHHHHHHHh-----------------------------------hcCCccccccccccCCccEEe
Q psy14495 698 TGDANLLVLPNIESANIAYNLLKI-----------------------------------TSGNGVAIGPILLGCSKPIHI 742 (766)
Q Consensus 698 aG~AdVLV~Pnl~aGNi~~K~l~~-----------------------------------~~~~~~~~G~iLlGl~~PVv~ 742 (766)
.|.+||+|++ +++||+++|+++. .|++.+++|++|+|++++|++
T Consensus 207 ~g~~DVvV~D-Gf~GNv~LK~~EG~~~~~~~~lk~~~~~~~~~~~~~ll~~~~l~~~~~~~d~~~~gGa~llG~~g~vvk 285 (322)
T TIGR00182 207 DGVCDVLVCD-GFTGNVVLKTMEGVAKTILSILKDEYKSTLRSKLAALFLKPILKSLKQKFDYANYGGAVLFGLNKLVIK 285 (322)
T ss_pred CCCCCEEEcC-CcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccccCCeEEecCCceEEE
Confidence 9999999995 7999999999753 188999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhc
Q psy14495 743 LTSSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 743 ~sr~~s~~~i~n~ialA~~~a~~ 765 (766)
+||+++..++.|+|..|...+++
T Consensus 286 ~HG~s~~~a~~~ai~~a~~~~~~ 308 (322)
T TIGR00182 286 SHGSSDSRAFFSAIRQAHEAVKS 308 (322)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987764
No 26
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=100.00 E-value=4.3e-44 Score=377.88 Aligned_cols=268 Identities=18% Similarity=0.223 Sum_probs=240.4
Q ss_pred CHHHHHHHHHHHHc-CCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcchhHHHHHHHHHHccCCCCHHHHHH
Q psy14495 461 EEKILRAIQVVIDE-NLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQL 539 (766)
Q Consensus 461 d~~vL~Aa~~a~~e-g~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~~~lr~~Kg~s~~~A~~ 539 (766)
-..+++|+.++.++ ...+++||||+++|++++.++.-... ++++|+|+++.+.|++ ++..++|++|
T Consensus 15 P~~vv~g~~~al~~~~~~~~iLvGd~~~i~~~L~~~~~~~~--~~i~i~~a~~~I~m~d--~p~~AvR~k~--------- 81 (338)
T COG0416 15 PEVVVPGALQALEEHPDLEIILVGDEDKIEPLLAKAPKLLR--ERIEIVHAEEVIEMDD--KPSQALRKKK--------- 81 (338)
T ss_pred cHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccc--ccceEEeccccccCCC--CHHHHHHcCC---------
Confidence 35678999999986 66999999999999999987753322 3799999999998874 6777777776
Q ss_pred HhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEEEe-CCCeEEEEeccccCCCCHHHH
Q psy14495 540 KMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLIL-MDRQLMLVDTHINENPNAEEL 618 (766)
Q Consensus 540 ~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~~-~~~~~~l~D~g~Ni~P~~e~L 618 (766)
++||+.|+++|++|+||+|||+ ||||++|..++..+|+++|+.||++++++|+ .++.++++|+|+|++|++++|
T Consensus 82 ---~sSM~~Ai~lVkeg~ADa~VSA--GnTGAlma~a~~~lg~i~gI~RPAi~~~~Pt~~~~~~~~LDvGANvd~~~~~L 156 (338)
T COG0416 82 ---GSSMRVALDLVKEGKADACVSA--GNTGALMALALLKLGRIKGIDRPALATLLPTIDGGKTVVLDVGANVDCKPEHL 156 (338)
T ss_pred ---CcHHHHHHHHHhcCcCCEEEec--CchHHHHHHHHHHhccCCCCCccceeeeccccCCCceEEEeCCCCCCCCHHHH
Confidence 4689999999999999999999 7999999999999999999999999999999 566799999999999999999
Q ss_pred HHHHHHHHHHHHH-cCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHHhhhCCCCc
Q psy14495 619 SEITILAAKKMFS-LGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSK 696 (766)
Q Consensus 619 ~~ia~~aa~~a~~-lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~ 696 (766)
+|||+|+..|++. +|++ |||||||. |++++|+.+.+|||++|||+. +.++|.|+++ ++..
T Consensus 157 ~qfA~MG~~ya~~v~~~~~PrVgLLNI---G~Ee~KG~e~~kea~~lLk~~-~~~nF~GnvE--------------g~di 218 (338)
T COG0416 157 VQFALMGSAYAEKVLGIKNPRVGLLNI---GTEEIKGNELVKEAYELLKET-PLINFIGNVE--------------GRDI 218 (338)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEec---ccccccCCHHHHHHHHHHHhC-CCCceeeecc--------------cccc
Confidence 9999999999998 7987 99999985 667899999999999999985 4589999986 4588
Q ss_pred cCCcccEEEeCCcchhHHHHHHHHh-----------------------------------hcCCccccccccccCCccEE
Q psy14495 697 LTGDANLLVLPNIESANIAYNLLKI-----------------------------------TSGNGVAIGPILLGCSKPIH 741 (766)
Q Consensus 697 vaG~AdVLV~Pnl~aGNi~~K~l~~-----------------------------------~~~~~~~~G~iLlGl~~PVv 741 (766)
+.|.+||+|++ +++||+++|+++. .+++.++.|++|+|+++||+
T Consensus 219 ~~G~~DVvV~D-GFtGNv~LKt~EG~a~~i~~~lK~~~~~s~~~klgall~k~~~k~lk~k~d~~~~~Ga~llGl~giVi 297 (338)
T COG0416 219 LDGTVDVVVTD-GFTGNVVLKTAEGTAKFILSLLKEEIKSSLKSKLGALLLKPALKRLKKKLDPSEYGGAVLLGLNGIVI 297 (338)
T ss_pred ccCCCCEEEeC-CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHhCChhhcCCeEEeccCceEE
Confidence 99999999995 7999999999974 18899999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhc
Q psy14495 742 ILTSSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 742 ~~sr~~s~~~i~n~ialA~~~a~~ 765 (766)
++|++++.++++++|..|..+++.
T Consensus 298 KsHGsad~~a~~~AI~~a~~~~~~ 321 (338)
T COG0416 298 KSHGSADARAFASAIRQAYEMVKS 321 (338)
T ss_pred EecCCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887764
No 27
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=100.00 E-value=1.5e-43 Score=376.25 Aligned_cols=274 Identities=14% Similarity=0.125 Sum_probs=240.2
Q ss_pred cEEEEe-cCCC---HHHHHHHHHHHHc----CCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcchhHHHHHH
Q psy14495 452 KRIIYS-EGEE---EKILRAIQVVIDE----NLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTY 523 (766)
Q Consensus 452 krIv~~-e~~d---~~vL~Aa~~a~~e----g~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~ 523 (766)
-||++= -|.| ..+++++..+.++ +..+++|||++++|++.+++.+. .+ +++|+|+++...|++ ++.
T Consensus 3 ~~IAvDaMGGD~~P~~~v~ga~~al~~~~~~~~~~i~LvG~~~~i~~~l~~~~~-~~---ri~iv~a~~vI~m~d--~p~ 76 (316)
T PRK13846 3 VQIGIDLMGGDHSPLVVWEVLGDVLLSSSSEQPVEFTVFASSEVHHQILSNSPL-SR---SPRIITAEDFVSMED--SPL 76 (316)
T ss_pred cEEEEEccCCCcChHHHHHHHHHHHHhcCCCCCeEEEEEeCHHHHHHHHHhCCC-cC---ceEEEeCCCcccCCC--CHH
Confidence 456664 2333 5678899988876 45899999999999999887654 22 799999999988874 555
Q ss_pred HHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEEEeCCCeEE
Q psy14495 524 LSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLM 603 (766)
Q Consensus 524 ~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~~~~~~~~ 603 (766)
.++|+| ++||+.|++||++|+||++||+ ||||++|..++.++|++||++||++++++|+.++.++
T Consensus 77 ~a~R~k-------------~SSm~~a~~lvk~g~ada~VSa--GnTGAl~a~a~~~lgri~Gi~RPala~~lPt~~g~~~ 141 (316)
T PRK13846 77 AAIRKK-------------SSSMALGLDYLQEDKLDAFIST--GNTAALVTLARAKIPMFPAVPRPALLVSVPTMRGFAV 141 (316)
T ss_pred HHHHcC-------------CCHHHHHHHHHHcCCCCEEEec--ChHHHHHHHHHHHhccCCCCCcceeeeeccCCCCCEE
Confidence 555544 4789999999999999999999 7999999999999999999999999999999877799
Q ss_pred EEeccccCCCCHHHHHHHHHHHHHHHHH-cCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHHHccCCCceEEcccchhh
Q psy14495 604 LVDTHINENPNAEELSEITILAAKKMFS-LGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNY 681 (766)
Q Consensus 604 l~D~g~Ni~P~~e~L~~ia~~aa~~a~~-lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~ 681 (766)
+.|+|+|++|++++|+|||+|++.|+|. +|++ |||||||. |++++|+++.+|||+++|++ ..+++|.|+++
T Consensus 142 lLD~GAN~d~~pe~L~qFA~mGs~ya~~~~gi~~PrVgLLNi---G~E~~KG~~~~kea~~LL~~-~~~inF~GnvE--- 214 (316)
T PRK13846 142 ILDVGANVSVNPEEMVGFARMGLAYRQCLGSNQPPTLGLLNI---GSEERKGTEAHRQTFRMLRE-TFGSAFLGNIE--- 214 (316)
T ss_pred EEECCccCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEeEEEC---ccccccCCHHHHHHHHHHhc-CCCCCcEeeec---
Confidence 9999999999999999999999999998 7998 99999985 77789999999999999975 22588999986
Q ss_pred ccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHh-------------------hcCCccccccccccCCccEEe
Q psy14495 682 ALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKI-------------------TSGNGVAIGPILLGCSKPIHI 742 (766)
Q Consensus 682 Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~-------------------~~~~~~~~G~iLlGl~~PVv~ 742 (766)
+++.+.|++||+|++ +++||+++|+++. .|++.++.|++|+|++++|++
T Consensus 215 -----------g~di~~G~~DVvV~D-GFtGNv~LKt~EG~~~~~~~~lk~~~~~~~k~~~D~~~~gGA~lLGl~g~vvk 282 (316)
T PRK13846 215 -----------SGDVFSGKVDIVVTD-GFTGNIFLKTAEGVFDFLRHILGDKLEKDIKRQLDYTIYPGSIVCGLSKLVIK 282 (316)
T ss_pred -----------cccccCCCCCEEEeC-CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCChhhcCCEEEEcCCceEEE
Confidence 457889999999995 7999999999853 289999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhc
Q psy14495 743 LTSSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 743 ~sr~~s~~~i~n~ialA~~~a~~ 765 (766)
+|+++++.+++|+|..|...++.
T Consensus 283 ~HG~S~a~a~~nAi~~A~~~~~~ 305 (316)
T PRK13846 283 CHGKACGTSLFGGISGSIDLARA 305 (316)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887764
No 28
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=100.00 E-value=1.7e-43 Score=384.78 Aligned_cols=275 Identities=16% Similarity=0.188 Sum_probs=242.7
Q ss_pred cEEEEe-cCC---CHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcC--------cCCCCCCCeEEECCCCCcchhHH
Q psy14495 452 KRIIYS-EGE---EEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLR--------LRIKPGIHFEIIDPDFNKQYKDY 519 (766)
Q Consensus 452 krIv~~-e~~---d~~vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~--------l~l~~~~~~eIid~~~~~~~~~~ 519 (766)
-+|++= -|. -..+++|+..+.++.-.+++|||++++|++.+++++ ++. .+++|+|+++.+.|++
T Consensus 95 ~~IAVDaMGGD~aP~~iV~Ga~~Al~~~~l~iiLVGde~~I~~~l~~~~~~~~l~~~~~~---~ri~IvhA~evI~M~e- 170 (437)
T PRK13845 95 IWVAVDGMGGDYAPGPILEGCLQAISRLPLNIKFVGEIEKVKEAAEALGLEELLEKAIDA---GHLELIASGPSIGMDE- 170 (437)
T ss_pred eEEEEEccCCCcChHHHHHHHHHHHHhCCCEEEEEeCHHHHHHHHHhccccccccccccc---CceEEEeCCCcccCCc-
Confidence 566664 233 367889999998773489999999999999998876 222 2799999999998874
Q ss_pred HHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEEEeCC
Q psy14495 520 WKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMD 599 (766)
Q Consensus 520 ~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~~~~ 599 (766)
+ ..++|+|| ++||+.|++||++|+||++||+ ||||++|..+++++|++||++||+++.++|+.+
T Consensus 171 -~-~~AvR~Kk------------dSSm~vA~~LVk~G~ADA~VSA--GNTGAlmA~a~~~Lgri~GI~RPAia~~lPt~~ 234 (437)
T PRK13845 171 -E-ATAVRKKK------------DASINVAMDLVKKGKALAVYSA--GNSGAMMASAIFRLGRLKGIDRPAIGALFPTKD 234 (437)
T ss_pred -h-HHHHHhCC------------CCHHHHHHHHHHcCCCCEEEeC--chHHHHHHHHHHHhccCCCCCcceeeeeCCCCC
Confidence 3 67777776 6899999999999999999999 799999999999999999999999999999965
Q ss_pred -C-eEEEEeccccCCCCHHHHHHHHHHHHHHHHH-cCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHHHccCCCceEEc
Q psy14495 600 -R-QLMLVDTHINENPNAEELSEITILAAKKMFS-LGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDG 675 (766)
Q Consensus 600 -~-~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~-lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG 675 (766)
+ .++++|+|+|++|++++|+|||+|+..|+|. +|++ |||||||. |++++|+++.+|||++||++. .+++|.|
T Consensus 235 ~G~~~llLDvGANvdckpe~L~QFAiMGsiYak~vlgi~~PrVGLLNI---G~Ee~KGn~l~keA~~LL~~~-~~inFiG 310 (437)
T PRK13845 235 PGQPVLVLDVGANMDCKPSYLHQFALLGNIYSRDVLQVKKPRIGLLNI---GEEECKGNDLSLKTFELLSEE-KRFHFAG 310 (437)
T ss_pred CCCceEEEECCccCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEeEEEC---CcCCcCcCHHHHHHHHHHhcC-CCCceEe
Confidence 5 7999999999999999999999999999998 8999 99999985 667899999999999999752 3589999
Q ss_pred ccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHh----------------------------------
Q psy14495 676 EMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKI---------------------------------- 721 (766)
Q Consensus 676 ~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~---------------------------------- 721 (766)
+++ +++.+.|.+||+|++ +++||+++|+++.
T Consensus 311 nVE--------------grdi~~G~~DVVVcD-GFtGNV~LKt~EG~a~~i~~~LK~~l~~~~~~klgalllk~~lk~~k 375 (437)
T PRK13845 311 NCE--------------GRDVLSGDFDVVVCD-GFTGNVLLKFLESVGSVLLDVLRAELPRGRRGKVGSAFLRSNLKRIK 375 (437)
T ss_pred eee--------------cccccCCCCCEEEeC-CcchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 986 457889999999995 7999999999974
Q ss_pred -hcCCccccccccccCCccEEecCCCCCHHHHHHHHHHHHHHHhc
Q psy14495 722 -TSGNGVAIGPILLGCSKPIHILTSSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 722 -~~~~~~~~G~iLlGl~~PVv~~sr~~s~~~i~n~ialA~~~a~~ 765 (766)
.|++.+++|++|+|++++|+++|+++++.++.|+|..|...+++
T Consensus 376 k~lD~~~yGGA~LLGlnGiVIKsHGsSda~A~~nAI~~A~~~v~~ 420 (437)
T PRK13845 376 KRLDHAEHGGALLLGVNGICVIGHGSSKALSVVSALRLAHSAASH 420 (437)
T ss_pred HhCCccccCCeEEecCCccEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 18899999999999999999999999999999999999887764
No 29
>PF02504 FA_synthesis: Fatty acid synthesis protein; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes []. The plsX gene encodes a poorly understood enzyme of phospholipid metabolism [].; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process; PDB: 1VI1_B 1U7N_B.
Probab=100.00 E-value=1e-40 Score=358.66 Aligned_cols=267 Identities=18% Similarity=0.248 Sum_probs=204.0
Q ss_pred CHHHHHHHHHHHHc-CCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcchhHHHHHHHHHHccCCCCHHHHHH
Q psy14495 461 EEKILRAIQVVIDE-NLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQL 539 (766)
Q Consensus 461 d~~vL~Aa~~a~~e-g~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~~~lr~~Kg~s~~~A~~ 539 (766)
-..+++|+..+.++ ...+++|||++++|++.+++.+.... ++++|+|+++.+.|++ ++.+++|+||
T Consensus 14 p~~~v~ga~~a~~~~~~~~i~lvG~~~~i~~~l~~~~~~~~--~~i~iv~a~~~I~m~d--~p~~a~r~k~--------- 80 (323)
T PF02504_consen 14 PEEVVEGAILALKENPDLEIVLVGDEEEIKPLLEKYGFELN--SRIEIVHASEVIEMDD--KPAYALRKKK--------- 80 (323)
T ss_dssp THHHHHHHHHHHHH-TTEEEEEEE-HHHHHTT-SS--------TTEEEEE-SB---TTS---HHHHHHH-T---------
T ss_pred hHHHHHHHHHHHHHCcCeEEEEEECHHHHHHHHHhcccccc--cceEEEecCCeecCCC--CHHHHhccCC---------
Confidence 46788999998876 45899999999999999988643322 3799999999998874 5555555544
Q ss_pred HhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEEEeCCCeEEEEeccccCCCCHHHHH
Q psy14495 540 KMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELS 619 (766)
Q Consensus 540 ~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~~~~~~~~l~D~g~Ni~P~~e~L~ 619 (766)
+||+.|+++|++|++|++||+ ||||++|..++.++|++||++||+++..+|+.++.++++|+|+|++|++++|+
T Consensus 81 ----SSm~~a~~lvk~g~ada~vSa--GnTGA~~a~a~~~l~~i~gi~RPal~~~~Pt~~g~~~llD~GANvd~~pe~L~ 154 (323)
T PF02504_consen 81 ----SSMVVALELVKEGEADAFVSA--GNTGALMAAALLILGRIPGIDRPALAAVLPTVKGPTLLLDVGANVDCKPEHLV 154 (323)
T ss_dssp ----CHHHHHHHHHHTTS-SEEEES--S-HHHHHHHHHHCT-B-TT-SS-EEEEEEE-TTTEEEEE-SSS-TT--HHHHH
T ss_pred ----CcHHHHHHHhhcCCceEEEec--CchHHHHHHHHHHhccCCCcCCceeeeecCCCCCcEEEEecccccccCHHHHH
Confidence 788999999999999999999 79999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCC-CeEEEeeCccCCCCCCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHHhhhCCCCcc
Q psy14495 620 EITILAAKKMFS-LGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKL 697 (766)
Q Consensus 620 ~ia~~aa~~a~~-lGi~-PkVAlLS~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~v 697 (766)
|||+|+..|+|. +|++ |||||||. |+++.|+++.+|||+++|++. ++++|.|+++ +++.+
T Consensus 155 qfA~mG~~ya~~~~~~~~PrVgLLNi---G~E~~KG~~l~~ea~~lL~~~-~~~nF~GnvE--------------g~di~ 216 (323)
T PF02504_consen 155 QFAIMGSAYAKSVLGIENPRVGLLNI---GTEEGKGNDLVKEAYELLKED-SSINFIGNVE--------------GRDIF 216 (323)
T ss_dssp HHHHHHHHHHHHTT--SS-EEEEEES---SSSTT-SSHHHHHHHHHHHC--TTSEEEEEEE--------------GGGCC
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEec---CCCCccccHHHHHHHHHHhcC-CCCEEEeeee--------------ccccc
Confidence 999999999998 8998 99999985 667899999999999999984 4799999986 34788
Q ss_pred CCcccEEEeCCcchhHHHHHHHHh-----------------------------------hcCCccccccccccCCccEEe
Q psy14495 698 TGDANLLVLPNIESANIAYNLLKI-----------------------------------TSGNGVAIGPILLGCSKPIHI 742 (766)
Q Consensus 698 aG~AdVLV~Pnl~aGNi~~K~l~~-----------------------------------~~~~~~~~G~iLlGl~~PVv~ 742 (766)
.|++||+|++ +++||+++|+++. .|++.++.|++|+|++++|++
T Consensus 217 ~G~~DVvV~D-GFtGNv~LKt~EG~~~~l~~~lk~~~~~~~~~kl~~ll~k~~lk~~~~~~d~~~~gGA~llGl~g~vik 295 (323)
T PF02504_consen 217 EGKVDVVVCD-GFTGNVVLKTAEGVAKFLFKLLKEEIKKSLLSKLGALLLKPALKRLKKKFDYEEYGGAPLLGLNGIVIK 295 (323)
T ss_dssp CTS-SEEE---HHHHHHHHHHHHHHHHHHHHHHHHHCTTT------HHHHHHCHHHHHHHC-GGGC--EEEETBSS-EEE
T ss_pred CCCCcEEEEc-cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhchhhhHhhhcccccCCCCeEEeccCccEEE
Confidence 9999999995 7999999999974 178999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhc
Q psy14495 743 LTSSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 743 ~sr~~s~~~i~n~ialA~~~a~~ 765 (766)
+|++++..++.|+|..|...++.
T Consensus 296 ~HG~S~~~ai~~aI~~a~~~~~~ 318 (323)
T PF02504_consen 296 AHGSSDAKAIKNAIRQAAEMVEN 318 (323)
T ss_dssp --TT--HHHHHHHHHHHHHHHHC
T ss_pred ecccccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988764
No 30
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=6.5e-39 Score=315.79 Aligned_cols=119 Identities=26% Similarity=0.495 Sum_probs=97.7
Q ss_pred ccccceeeccchHHHHHH---HhcCccccc--------------ccccCCcEEEEEecccccccCCCCCCCCCccchhhh
Q psy14495 39 QDDLALAYSPGVASACEE---IVSNSNNVF--------------KYTTKGNLVAVITNGTAVLGMGNIGPLASKPVMEGK 101 (766)
Q Consensus 39 ~~~l~i~YtP~v~~~c~~---i~~~p~~~~--------------~~~~~~~~v~vvtdG~~iLGlGd~G~~~~~~i~~gK 101 (766)
.++||++||||||+||++ +|++|+|+| +|+.+..+++|||||||||||||+|++ |||||+||
T Consensus 17 ~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILGlGD~G~~-Gm~I~~GK 95 (182)
T PF00390_consen 17 EEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILGLGDLGVN-GMGIPIGK 95 (182)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTTTBS-GGG-GHHHHHHH
T ss_pred HhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhccccCcCcc-eEEeeehh
Confidence 389999999999999998 699999988 577777899999999999999999986 59999999
Q ss_pred HHHHhhhcCCC---c----cccCCCCC-----------------------CHHHHHHHHHHhCCCccccccccCCCCchH
Q psy14495 102 AVLFKKFAGID---V----FDLEINET-----------------------DPDKLCDIIFSLEPTFGGINLEDIKAPECF 151 (766)
Q Consensus 102 ~~ly~~~~gi~---~----l~v~~~~~-----------------------~~~~~v~~v~~~~p~~g~i~~ED~~~~~af 151 (766)
++|||+||||| + ||+||||+ ++||||++|+.+||.++.||||||+++|||
T Consensus 96 l~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp~~~IqfEDf~~~nAf 175 (182)
T PF00390_consen 96 LALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGPNALIQFEDFSNPNAF 175 (182)
T ss_dssp HHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCHHH
T ss_pred hhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCCCeEEEEecCCChhHH
Confidence 99999999999 4 55666653 389999999999944459999999999999
Q ss_pred HHHHHHh
Q psy14495 152 YIEKKLR 158 (766)
Q Consensus 152 ~il~~~~ 158 (766)
++|+|||
T Consensus 176 ~iL~kYr 182 (182)
T PF00390_consen 176 RILDKYR 182 (182)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9999997
No 31
>TIGR03270 methan_mark_4 putative methanogen marker protein 4. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely linked to it. Some members have been suggested to be a methyltransferase, based on the proximity of its gene to genes of the multi-subunit complex, N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase. That context is not conserved, however. The family shows similarity to various phosphate acyltranferases.
Probab=100.00 E-value=4.4e-34 Score=285.91 Aligned_cols=186 Identities=20% Similarity=0.195 Sum_probs=160.7
Q ss_pred HHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEEE-eCCCeEEEEeccccCCCCHHHHHHHHHHHHH
Q psy14495 549 GAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLI-LMDRQLMLVDTHINENPNAEELSEITILAAK 627 (766)
Q Consensus 549 A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~-~~~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~ 627 (766)
-+++|++|+||++|+|.++| +.+|+.+++..| ++||++++. .+++++++||+|+|+.|+.+|+++|+.|++.
T Consensus 10 lv~lv~~G~ad~lmKG~l~T-~~~lk~L~k~~g------~lshv~v~e~~~~kl~~ltD~gin~~P~l~~K~~Ii~nav~ 82 (202)
T TIGR03270 10 LIDDLVNGRLDAAVRGSLSS-SNTIRELKKALG------KIYRASILETADGRIFLLAPVGIDEGWTISDKVKIIELASE 82 (202)
T ss_pred HHHHHHCCCCCEEEecccCH-HHHHHHHHhhcC------eEEEEEEEEcCCCcEEEECCceeecCCCHHHHHHHHHHHHH
Confidence 48999999999999999886 899997666664 789999998 4789999999999999999999999999999
Q ss_pred HHHHcCCCCeEEEeeCccC----CCCCCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHHhhhCCC--CccCCcc
Q psy14495 628 KMFSLGLKPRVALLSNSNF----GSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPN--SKLTGDA 701 (766)
Q Consensus 628 ~a~~lGi~PkVAlLS~s~~----gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~--s~vaG~A 701 (766)
++|.||++||||+||++|. .|+++|+|.+ ||.++.+-...+| .+++|++. |+++|+|
T Consensus 83 ~a~~lGi~PKVAvLsa~E~~dvgvnp~m~~Tld--dAa~L~km~~~g~---------------~a~~KgI~~es~v~g~a 145 (202)
T TIGR03270 83 FLRRLGREPKVAVLSGGRLGDVGRSPEVDRSIA--DGELIARLLKDGM---------------EIEHYGILIEEALKDGS 145 (202)
T ss_pred HHHHcCCCCcEEEEeeeeccCcCCCCCccchHH--HHHHHHHHHHCCc---------------chhccCccccCccCCCC
Confidence 9999999999999999998 7899999984 2433332111122 27889885 9999999
Q ss_pred cEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecCCCCCHHHHHHHHHHH
Q psy14495 702 NLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVRRIVNMTALC 759 (766)
Q Consensus 702 dVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~sr~~s~~~i~n~ialA 759 (766)
|+|++||+++||++||++.+ |+++...|.++.|...|++++||++|.+++++++++|
T Consensus 146 DiLl~PdiesGN~l~Ksl~~-~~~~~~aG~v~~~~~ppvVlTSRads~~~k~~siaL~ 202 (202)
T TIGR03270 146 NVIIAPDGISGNLIFRSLAL-VGGGRSYGAPVLNDEGVFVDTSRSQTAEGYYNALKLA 202 (202)
T ss_pred CEEEeCchHHHhHHHHHHHH-HcCCcccceeeecCCCeEEECCCCCCHHHHHHhhhhC
Confidence 99999999999999999999 9999887766666555599999999999999999975
No 32
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=99.57 E-value=9.5e-14 Score=137.55 Aligned_cols=193 Identities=17% Similarity=0.174 Sum_probs=145.4
Q ss_pred HHHHHHcCCccEEEecccCChHHHHHHHHHHhccCCCccceeEEEEEEeCCC-eEEEEeccccCCCCHHHHHHHHHHHHH
Q psy14495 549 GAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDR-QLMLVDTHINENPNAEELSEITILAAK 627 (766)
Q Consensus 549 A~~lV~~G~AD~lvsG~~~tT~~~l~~~~~iig~~~g~~~~s~~~i~~~~~~-~~~l~D~g~Ni~P~~e~L~~ia~~aa~ 627 (766)
-++.+.+|++|+.|.|.+.. +.++..++.-+|+ +.....+++..+.. .|+++.+|+...-+.+++..|++.|++
T Consensus 55 lve~Lv~g~~daaVRGslsa-s~v~~eLkealgm----~~~~Ras~le~~~~~~flLaPVGIDEg~ti~dk~ri~~laae 129 (256)
T COG4002 55 LVEKLVDGEIDAAVRGSLSA-SKVILELKEALGM----KFYCRASILENPFTNGFLLAPVGIDEGKTIKDKIRIIELAAE 129 (256)
T ss_pred HHHHHHccchhHHHhcccch-hhHHHHHHHhcCC----CceeeeeeeecCCcCceEEeccccCCCccHHHHHHHHHHHHH
Confidence 36778899999999998776 4556566665553 34556778887544 499999999999999999999999999
Q ss_pred HHHHcCCCCeEEEeeCccCCC-CCCcchHHHH-HH---HHHHHccCCCceEEcccchhhccCHHHHhhhCCCCccCCccc
Q psy14495 628 KMFSLGLKPRVALLSNSNFGS-NNNISAHKMR-TA---LKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDAN 702 (766)
Q Consensus 628 ~a~~lGi~PkVAlLS~s~~gs-~~~~~~~~vr-eA---~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~Ad 702 (766)
+.|+.|++|+||+||.+..|+ +..+.++..- |+ .++++++.-+..=.|-+ ++..++- -|
T Consensus 130 flrr~~~ep~VaVlSgGRlgDlGR~~~VDrtladgEfva~~~k~~g~~v~H~~IL---------------IEealkd-gn 193 (256)
T COG4002 130 FLRRTGIEPKVAVLSGGRLGDLGRNKEVDRTLADGEFVAEHFKGNGVDVIHYGIL---------------IEEALKD-GN 193 (256)
T ss_pred HHHHhCCCcceEEecCCcchhccCcchhhhhhhchHHHHHHHhccCceeEEeeeE---------------HHHHhhc-CC
Confidence 999999999999999988887 5555555321 22 12223321111111211 1122222 29
Q ss_pred EEEeCCcchhHHHHHHHHhhcCCccccccc-cccCCccEEecCCCCCHHHHHHHHHHHHHHH
Q psy14495 703 LLVLPNIESANIAYNLLKITSGNGVAIGPI-LLGCSKPIHILTSSATVRRIVNMTALCVIDA 763 (766)
Q Consensus 703 VLV~Pnl~aGNi~~K~l~~~~~~~~~~G~i-LlGl~~PVv~~sr~~s~~~i~n~ialA~~~a 763 (766)
++|+||.-+||.+++++.. .++....|++ +++-+...++|||+.+++..++++.++.-.+
T Consensus 194 vIia~dGItGNLiFR~l~l-vgg~~g~GAp~al~~d~vFVDTSR~q~a~~yarAlkfl~~~a 254 (256)
T COG4002 194 VIIAVDGITGNLIFRCLGL-VGGIRGYGAPIALDKDVVFVDTSRNQNAEGYARALKFLHGLA 254 (256)
T ss_pred EEEEecCccchhhhhhHHH-hcccCCCCCceEecCCcEEEechhhhhHHHHHHHHHHHHhhh
Confidence 9999999999999999999 8888877877 8999999999999999999999998876544
No 33
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.77 E-value=6.8e-08 Score=85.41 Aligned_cols=85 Identities=22% Similarity=0.277 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc
Q psy14495 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT 251 (766)
Q Consensus 172 GTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~ 251 (766)
+||.++++.+..+++..+.+++..+++|+|+|.+|.+++..|.+.|.. +++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~--~v~v~~r----------------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGK--KVVLCDR----------------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcC-----------------------
Confidence 689999999999999999999999999999999999999999998744 7999988
Q ss_pred CCCCHHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEecc
Q psy14495 252 TARTLSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALA 293 (766)
Q Consensus 252 ~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLs 293 (766)
|+||+++. ++.++++.++.|.++|+||.++
T Consensus 56 ------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred ------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence 99999997 7788888899999999999875
No 34
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=98.63 E-value=1.7e-06 Score=94.44 Aligned_cols=286 Identities=14% Similarity=0.156 Sum_probs=174.7
Q ss_pred cEEEEecCC----CHHH-HHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCc-------chhHH
Q psy14495 452 KRIIYSEGE----EEKI-LRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNK-------QYKDY 519 (766)
Q Consensus 452 krIv~~e~~----d~~v-L~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~-------~~~~~ 519 (766)
++|++.-|+ -+++ +++...-.....+.+|++|++..++...+..++++ +++.++..+.. .....
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~~~~~~~~~~~~vv~Gd~~~l~~~~~~l~~~~----~~~~i~~~~~~~~~~~~~~v~~~ 79 (332)
T PRK03743 4 PIIAIPIGDPAGIGPEIVVKTLADKEVYDECKPFLIGDAPVIERAMKICGVDL----NINKIKKPAEGKFEWGTIDLIDL 79 (332)
T ss_pred CeEEEeCCCCcchHHHHHHHHHhcccccCCCCEEEEECHHHHHHHHHHcCCCc----eeeecCchhhhcccCCCeEEEec
Confidence 578888665 2333 34321111012257899999999998777767654 34444321110 00000
Q ss_pred -HHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHH------HHhccCCCccceeEE
Q psy14495 520 -WKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYID------QIIGKKNKTNIYAAM 592 (766)
Q Consensus 520 -~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~------~iig~~~g~~~~s~~ 592 (766)
......+ .--..|.+..+... ..+-.|++++++|++|++|.+=++-. ++-.+.. ..+..+.|.+.+ +
T Consensus 80 ~~~~~~~~-~~G~~~~~~G~aa~--~~l~~A~~~~~~g~~~alVTaPinK~-a~~~aG~~f~GhTe~La~~~g~~~~--~ 153 (332)
T PRK03743 80 GNYDCDSI-KWGKVQALAGKAAF--EYIKKSVELAMEGKVDAVATTPINKE-ALKAAGVKYIGHTEILADLTGTEDP--L 153 (332)
T ss_pred cccccCCC-CCCCcCHHHHHHHH--HHHHHHHHHHHcCCCCEEEECCcCHH-HHHhCCCCCCChHHHHHHHhCCCCe--E
Confidence 0000000 01113555544433 25667999999999999999977642 2222221 122233333222 2
Q ss_pred EEEEeCCCeEEEEecccc-----CCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEee----CccCCCCCCcchHHHHHHHH
Q psy14495 593 SNLILMDRQLMLVDTHIN-----ENPNAEELSEITILAAKKMFSLGLK-PRVALLS----NSNFGSNNNISAHKMRTALK 662 (766)
Q Consensus 593 ~i~~~~~~~~~l~D~g~N-----i~P~~e~L~~ia~~aa~~a~~lGi~-PkVAlLS----~s~~gs~~~~~~~~vreA~~ 662 (766)
.+|-..+=.+.+.=+.+- -.-|.+.+.+.+....+..+.||++ ||||++. ++|.|.-..+..+.+.=|.+
T Consensus 154 Mml~~~~LrV~lvT~HipL~~V~~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~ 233 (332)
T PRK03743 154 TMFEVRNLRVFFLTRHVSLKKACDYVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSGEHGLFGDEEVDEIIPAVE 233 (332)
T ss_pred EEEecCCcEEEEeccchhHHHHHHHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHH
Confidence 222222211222222221 1347788888899999988889998 9999987 46655543455566667778
Q ss_pred HHHccCCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEe
Q psy14495 663 LIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHI 742 (766)
Q Consensus 663 llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~ 742 (766)
.++.+ ++.++||+..|.+.-+... |+.|.+|.--=|-|=|-+|++-. +.+. -+-+|+ |++-
T Consensus 234 ~~~~~--g~~v~GP~paDt~F~~~~~----------~~~D~vvaMYHDQGliP~K~l~F--~~gV---NvTlGL--P~iR 294 (332)
T PRK03743 234 AAQEM--GINVEGPVPADSVFHLALQ----------GRYDAVLSLYHDQGHIATKTLDF--ERTI---AITNGL--PFLR 294 (332)
T ss_pred HHHHC--CCcccCCCCchhhcccccc----------cCCCEEEEcccccCChhheeccc--CCce---EEecCC--CeeE
Confidence 88764 5788999999977764433 78999999888999999999874 3322 255777 8888
Q ss_pred cC------------CCCCHHHHHHHHHHHHHHHhcC
Q psy14495 743 LT------------SSATVRRIVNMTALCVIDALSK 766 (766)
Q Consensus 743 ~s------------r~~s~~~i~n~ialA~~~a~~~ 766 (766)
|| +-++..+..+++.+|..+++.|
T Consensus 295 TS~DHGTAfDIAGkg~A~~~S~~~Ai~lA~~~~~~~ 330 (332)
T PRK03743 295 TSVDHGTAFDIAGTGKASSVSMEEAILLAAKYAPMF 330 (332)
T ss_pred eCCCCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 87 6688999999999999887643
No 35
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=98.61 E-value=8.5e-06 Score=88.91 Aligned_cols=279 Identities=14% Similarity=0.146 Sum_probs=174.6
Q ss_pred cEEEEecCC----CHHH-HHHHHHH-HHcCCcEEEEEcCHHHHHHHHHhcCcCCC---CCCCeEEECCCCCcchhHHHHH
Q psy14495 452 KRIIYSEGE----EEKI-LRAIQVV-IDENLAFPILIGRTKILEQHIKKLRLRIK---PGIHFEIIDPDFNKQYKDYWKT 522 (766)
Q Consensus 452 krIv~~e~~----d~~v-L~Aa~~a-~~eg~~~~ILvG~~~~I~~~~~~~~l~l~---~~~~~eIid~~~~~~~~~~~~~ 522 (766)
++|++.-|+ -|++ +++.... .....+.++++|++..++..++..+++++ ....+.+++.......
T Consensus 6 p~iaIT~GDpaGIGpEii~kal~~~~~~~~~~~~vv~Gd~~~l~~~~~~lg~~~~~~~~~g~l~v~~~~~~~~~------ 79 (329)
T PRK01909 6 LQIAITTGEPAGVGPELTVRALADAAARWPDARFTVLGDAALLAARAAAVGADWARLAAGGHVTVAHRPLAAPA------ 79 (329)
T ss_pred CeEEEeCCCCcchHHHHHHHHHhcccccccCCCEEEEECHHHHHHHHHHhCCCcccccCCCceEEEecCcccCC------
Confidence 688888665 3444 3332111 00012578999999999988888876531 0012455543111000
Q ss_pred HHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHH------HHhccCCCccceeEEEEEE
Q psy14495 523 YLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYID------QIIGKKNKTNIYAAMSNLI 596 (766)
Q Consensus 523 ~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~------~iig~~~g~~~~s~~~i~~ 596 (766)
.--..|.+..+... ..+-.|+.++++|++|++|.+=++- .++-.+.. ..+....|.+.+ +.+|-
T Consensus 80 -----~~G~~s~~~G~aa~--~~l~~A~~~~~~g~~~aivTaPinK-~al~~aG~~~~GhTe~La~~~g~~~~--~Mml~ 149 (329)
T PRK01909 80 -----EAGKLDAANGRYVL--DLLDAAIDGALAGRYDAIVTAPLQK-STINDAGVPFTGHTEYLAERTHTPRV--VMMLA 149 (329)
T ss_pred -----CCCCcCHHHHHHHH--HHHHHHHHHHHcCCCCEEEeCCcCH-HHHHhCCCCCCCHHHHHHHHhCCCCe--EEEEe
Confidence 00012333333322 2455799999999999999998774 23222221 223333343332 22222
Q ss_pred eCC--Ce-EEEEecccc-----CCCCHHHHHHHHHHHHHHHH-HcCCC-CeEEEee----CccCCCCCCcchHHHHHHHH
Q psy14495 597 LMD--RQ-LMLVDTHIN-----ENPNAEELSEITILAAKKMF-SLGLK-PRVALLS----NSNFGSNNNISAHKMRTALK 662 (766)
Q Consensus 597 ~~~--~~-~~l~D~g~N-----i~P~~e~L~~ia~~aa~~a~-~lGi~-PkVAlLS----~s~~gs~~~~~~~~vreA~~ 662 (766)
..+ ++ +.+.=..+- -.-|.+.+.+.+....+..+ .||++ ||+|++. ++|.|.-..+..+.+.=|.+
T Consensus 150 ~~~~~~LrV~lvT~HipL~~V~~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~ 229 (329)
T PRK01909 150 GTGPRPLRVALATTHLPLKDVSAALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGENGYLGREEIDVIEPALA 229 (329)
T ss_pred eCCCCceEEEEeecCccHHHHHHHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHH
Confidence 222 22 222222221 13477888999999999988 49998 9999986 46666544555566666778
Q ss_pred HHHccCCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEe
Q psy14495 663 LIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHI 742 (766)
Q Consensus 663 llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~ 742 (766)
.++++ ++.++||+..|.+..+... |+.|.+|.--=|-|=|-+|++-. +.+. -+-+|+ |++-
T Consensus 230 ~~~~~--Gi~v~GP~paDt~F~~~~~----------~~~D~vvaMYHDQGliP~K~l~F--~~gV---NvTlGL--P~iR 290 (329)
T PRK01909 230 RARAA--GIDARGPYPADTLFQPRYL----------EDADCVLAMFHDQGLPVLKYATF--GEGI---NVTLGL--PIIR 290 (329)
T ss_pred HHHHC--CCCccCCCCchhhcccccc----------cCCCEEEEccccccchhheeccc--Ccce---EEecCC--CeeE
Confidence 88765 5778999999977765433 78999999888899999999874 3322 256777 8888
Q ss_pred cC------------CCCCHHHHHHHHHHHHHHHhc
Q psy14495 743 LT------------SSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 743 ~s------------r~~s~~~i~n~ialA~~~a~~ 765 (766)
|| +-++..+..+++.+|+.++..
T Consensus 291 TSvDHGTAfDIAGkg~A~~~S~~~Ai~lA~~~a~~ 325 (329)
T PRK01909 291 TSVDHGTALDLAGTGRADPGSMIAAIDTAVTMARH 325 (329)
T ss_pred eCCCCcchhhhhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 87 668899999999999988764
No 36
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=98.60 E-value=6.3e-06 Score=90.19 Aligned_cols=289 Identities=14% Similarity=0.163 Sum_probs=178.2
Q ss_pred cEEEEecCC----CHHH-HHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcC-CC---CCCCeEEECCCCCcchhHHHHH
Q psy14495 452 KRIIYSEGE----EEKI-LRAIQVVIDENLAFPILIGRTKILEQHIKKLRLR-IK---PGIHFEIIDPDFNKQYKDYWKT 522 (766)
Q Consensus 452 krIv~~e~~----d~~v-L~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~-l~---~~~~~eIid~~~~~~~~~~~~~ 522 (766)
++|++.-|+ -|++ +++.........+.|+++|++..++..++..+.. +. ....+.+++.......
T Consensus 10 p~IaIT~GDpaGIGPEii~ka~~~~~~~~~~~~vv~Gd~~vl~~~~~~l~~~~~~~i~~~g~~~vl~~~~~~~~------ 83 (345)
T PRK02746 10 PRLAITLGDPAGIGPEVILKALASPELPENCQPTLVGCRSLLEQTYQRLKSQGIEPLADPANLDILDIPLDSTI------ 83 (345)
T ss_pred CcEEEeCCCCcchHHHHHHHHHhcccccCCCCEEEEECHHHHHHHHHHhcCCCceeccCCCceEEEecCcccCC------
Confidence 588888665 3343 4443211111236889999999999877776421 10 0012444442111000
Q ss_pred HHHHHccCC-CCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHH------HHhccCCCccceeEEEEE
Q psy14495 523 YLSMTNRKG-MIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYID------QIIGKKNKTNIYAAMSNL 595 (766)
Q Consensus 523 ~~~lr~~Kg-~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~------~iig~~~g~~~~s~~~i~ 595 (766)
..| .|.+..+... ..+-.|++++++|++|++|.+=++- .++-.+.. ..+....|.+.+ .|.+.
T Consensus 84 ------~~G~~~~~~G~aa~--~~l~~A~~~~~~G~~daiVTaPInK-~al~~aG~~f~GHTE~La~~~g~~~~-~Mml~ 153 (345)
T PRK02746 84 ------IPGKGNAASGAASF--AYLTTAIEITLAGEFDAIVTAPIAK-SAWHAAGHHYPGQTEVLAELAGVERF-GMLFT 153 (345)
T ss_pred ------CCCCcCHHHHHHHH--HHHHHHHHHHHcCCCCEEEECCcCH-HHHHhCCCCCCCHHHHHHHHhCCCce-EEEEe
Confidence 001 2333333322 2455799999999999999997764 22222221 122223333221 12222
Q ss_pred EeC-----CCe-EEEEecccc-----CCCCHHHHHHHHHHHHHHHHH-cCCC-CeEEEee----CccCCCCCCcchHHHH
Q psy14495 596 ILM-----DRQ-LMLVDTHIN-----ENPNAEELSEITILAAKKMFS-LGLK-PRVALLS----NSNFGSNNNISAHKMR 658 (766)
Q Consensus 596 ~~~-----~~~-~~l~D~g~N-----i~P~~e~L~~ia~~aa~~a~~-lGi~-PkVAlLS----~s~~gs~~~~~~~~vr 658 (766)
.. +++ +.+.=..+- -.-|.+.+.+.+....+..+. ||++ ||||++. ++|.|.-..+..+.+.
T Consensus 154 -~~~~~~~~~LrV~lvT~HipL~~V~~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~ 232 (345)
T PRK02746 154 -ARSPHTGWRLRTLLATTHIPLCQVPKTLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGEQGQLGTEEKDWLI 232 (345)
T ss_pred -cCCCCCCCceEEEEeecchhHHHHHHHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCcHHHHHHHH
Confidence 22 022 222222221 145778889999999999995 9998 9999987 4665554445556667
Q ss_pred HHHHHHHccCCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCc
Q psy14495 659 TALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSK 738 (766)
Q Consensus 659 eA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~ 738 (766)
=|.+.++++.+++.+.||+..|.+..+..+ +.....+.|+.|++|.--=|-|=|-+|++-. +.+. -+-+|+
T Consensus 233 PAIe~~r~~g~g~~v~GP~paDt~F~~~~~--~~~~~~~~~~~D~vvaMYHDQGliP~K~l~F--~~gV---NvTlGL-- 303 (345)
T PRK02746 233 PWLESWRQKNPDIQLLGPIPPDTCWVSPAQ--AWYGKGVAEAPDGYLALYHDQGLIPVKLMAF--DRAV---NTTIGL-- 303 (345)
T ss_pred HHHHHHHhcCCCceeeCCCCchhhcccccc--ccccccccCCCCEEEECcccCCChhheeecc--Ccce---EEecCC--
Confidence 788888877556899999999988876442 1223445588999999988999999999874 3322 255677
Q ss_pred cEEecC------------CCCCHHHHHHHHHHHHHHHhcC
Q psy14495 739 PIHILT------------SSATVRRIVNMTALCVIDALSK 766 (766)
Q Consensus 739 PVv~~s------------r~~s~~~i~n~ialA~~~a~~~ 766 (766)
|++-|| +-++..++.+++.+|+.++..+
T Consensus 304 P~iRTS~DHGTAfDIAGkg~A~~~S~~~Ai~lA~~la~~r 343 (345)
T PRK02746 304 PFIRTSPDHGTAFDIAGKGIARPQSMKAAIKLAWELSKQR 343 (345)
T ss_pred CeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHHHHHHhhc
Confidence 888887 6688999999999999887653
No 37
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=98.57 E-value=6.3e-06 Score=90.15 Aligned_cols=287 Identities=14% Similarity=0.150 Sum_probs=173.8
Q ss_pred cEEEEecCC----CHH-HHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcc--hhH---HHH
Q psy14495 452 KRIIYSEGE----EEK-ILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQ--YKD---YWK 521 (766)
Q Consensus 452 krIv~~e~~----d~~-vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~--~~~---~~~ 521 (766)
++|++.-|+ -++ ++++...-.+...+.++++|++..++..++..++++ .++.++..+... .+. ..+
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~~~~~~~~~~~~vv~Gd~~vl~~~~~~lg~~~----~~~~i~~~~~~~~~~~g~~~~l~ 79 (336)
T PRK05312 4 RPLALSLGDPAGIGPEIALKAWLRRRELGLPPFFLIGDPAVLAARARLLGLDV----PVAEVTDPEEAAAVFADALPVLP 79 (336)
T ss_pred CeEEEeCCCCcchHHHHHHHHHhccccccCCCEEEEECHHHHHHHHHHhCCCc----ceeecCChhhhcccCCCceEEee
Confidence 577877654 233 344432211222357899999999998888887754 244443211100 000 000
Q ss_pred -HH-HHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHH------HHhccCCCcc---cee
Q psy14495 522 -TY-LSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYID------QIIGKKNKTN---IYA 590 (766)
Q Consensus 522 -~~-~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~------~iig~~~g~~---~~s 590 (766)
.+ ..+.-. ..|.+..+... ..+-.|++++++|++|++|.+=++-. ++-.+.. ..+....|.+ .-.
T Consensus 80 ~~~~~~~~~G-~~~~~~G~aa~--~~l~~A~~~~~~g~~daiVTaPinK~-a~~~aG~~f~GhTe~La~~~g~~~~~~~~ 155 (336)
T PRK05312 80 LPFPAPVVPG-QPDPANAAGVI--AAIERAVGLVLSGEAAAVVTAPIAKK-VLYDAGFAFPGHTEFLAELAGVATGKPVQ 155 (336)
T ss_pred cccccCCCCC-CcCHHHHHHHH--HHHHHHHHHHHcCCCCEEEECCcCHH-HHHhCCCCCCChHHHHHHHhCCCccCCCc
Confidence 00 000001 13444444333 25567999999999999999977642 2222211 1122222221 001
Q ss_pred EEEEEEeCCCeEEEEecccc-----CCCCHHHHHHHHHHHHHHHH-HcCCC-CeEEEee----CccCCCCCCcchHHHHH
Q psy14495 591 AMSNLILMDRQLMLVDTHIN-----ENPNAEELSEITILAAKKMF-SLGLK-PRVALLS----NSNFGSNNNISAHKMRT 659 (766)
Q Consensus 591 ~~~i~~~~~~~~~l~D~g~N-----i~P~~e~L~~ia~~aa~~a~-~lGi~-PkVAlLS----~s~~gs~~~~~~~~vre 659 (766)
.+.+|-..+=.+.+.=..+- -.-|.+.+.+.+....+..+ .||++ ||+|++. ++|.|.-..+..+.+.-
T Consensus 156 ~~Mml~~~~LrV~lvT~HipL~~V~~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~P 235 (336)
T PRK05312 156 PVMMLAGPQLRVVPVTIHIPLRDVPAALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAGEGGALGREDIDIIAP 235 (336)
T ss_pred eEEEEecCCcEEEEeccchhHHHHHHHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCCCCCCCcHHHHHHHHH
Confidence 12222222211222222221 13477888999999999999 49998 9999987 46666544555566667
Q ss_pred HHHHHHccCCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCcc
Q psy14495 660 ALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKP 739 (766)
Q Consensus 660 A~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~P 739 (766)
|.+.++++ ++.+.||+..|.+..+.. .|+.|.+|.--=|-|=|-+|++-. +.+. -+-+|+ |
T Consensus 236 AI~~~~~~--Gi~v~GP~paDt~F~~~~----------~~~~D~vvaMYHDQGliP~K~l~F--~~gV---NvTlGL--P 296 (336)
T PRK05312 236 AIEQLRAE--GIDARGPLPADTMFHAAA----------RATYDAAICMYHDQALIPIKTLDF--DGGV---NVTLGL--P 296 (336)
T ss_pred HHHHHHHC--CCCccCCCCchhhccccc----------ccCCCEEEEcccccCChhheeccc--Ccce---EEecCC--C
Confidence 77888765 577899999997776543 278999999888999999999874 3322 255777 8
Q ss_pred EEecC------------CCCCHHHHHHHHHHHHHHHhc
Q psy14495 740 IHILT------------SSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 740 Vv~~s------------r~~s~~~i~n~ialA~~~a~~ 765 (766)
++-|| +-++..+..+++.+|+.++..
T Consensus 297 ~iRTSvDHGTAfDIAGkg~A~~~S~~~Ai~lA~~~~~~ 334 (336)
T PRK05312 297 FIRTSPDHGTAFDIAGKGIARPDSLIAALRLAAQMAAN 334 (336)
T ss_pred eeEeCCCCcchhhhhcCCCCCHHHHHHHHHHHHHHHhc
Confidence 88887 668899999999999988764
No 38
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=98.55 E-value=5.2e-06 Score=90.39 Aligned_cols=255 Identities=15% Similarity=0.138 Sum_probs=162.0
Q ss_pred cEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCC--Ccc-hhH--HHH-HHH-HHHccCCCCHHHHHHHhhhCcHHHH
Q psy14495 477 AFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDF--NKQ-YKD--YWK-TYL-SMTNRKGMIEQYAQLKMRKCNTLIG 549 (766)
Q Consensus 477 ~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~--~~~-~~~--~~~-~~~-~lr~~Kg~s~~~A~~~~~~~s~~~A 549 (766)
+.++++|++..++...+..++ . .++.++... ... ... ..+ .+. .+. .-..|.+..+... .++-.|
T Consensus 28 ~~~vv~gd~~~l~~~~~~lg~-~----~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~-~G~~s~~sG~aa~--~~l~~A 99 (320)
T TIGR00557 28 CPPVVIGDPALLEARAKLLGL-L----PLVDIDAPEDAAAAFPGALPVLPVPLAAPVT-PGKPDPANGAYVF--ETLERA 99 (320)
T ss_pred CCEEEEECHHHHHHHHHHcCC-c----ceEeecCccccccccCCceEEEecccccCCC-CCCcCHHHHHHHH--HHHHHH
Confidence 578999999999988888776 3 344443211 000 000 000 000 000 0113445444433 256679
Q ss_pred HHHHHcCCccEEEecccCChHHHHHHH------HHHhccCCCccceeEEEEEEeCCCe-EEEEeccccC-----CCCHHH
Q psy14495 550 AMAIHKGNADGMICGILGSTKLHLNYI------DQIIGKKNKTNIYAAMSNLILMDRQ-LMLVDTHINE-----NPNAEE 617 (766)
Q Consensus 550 ~~lV~~G~AD~lvsG~~~tT~~~l~~~------~~iig~~~g~~~~s~~~i~~~~~~~-~~l~D~g~Ni-----~P~~e~ 617 (766)
+.++++|++|++|.+=++. .++..+. ...+....|.+.+ +.+|- .+++ +.+.=..+-. .-|.+.
T Consensus 100 ~~~~~~g~~~aiVTaPi~K-~a~~~aG~~f~GhTe~La~~~g~~~~--~Mml~-~~~LrV~lvT~HipL~~v~~~it~~~ 175 (320)
T TIGR00557 100 VELCLAGEADALVTAPIHK-GAINQAGFPFPGHTEFLAELTGVKDV--VMMLA-GPGLRVALATTHIPLKDVPAALTPEL 175 (320)
T ss_pred HHHHHcCCCCEEEECCcCH-HHHHhCCCCCCChHHHHHHHhCCCCe--EEEEe-cCCeEEEEEeccccHHHHHHHhCHHH
Confidence 9999999999999998774 2333332 1233333343222 22222 2222 2222222221 357888
Q ss_pred HHHHHHHHHHHHHH-cCCC-CeEEEee----CccCCCCCCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHHhhh
Q psy14495 618 LSEITILAAKKMFS-LGLK-PRVALLS----NSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQ 691 (766)
Q Consensus 618 L~~ia~~aa~~a~~-lGi~-PkVAlLS----~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K 691 (766)
+.+.+....+..++ ||++ ||||++. ++|.|.-..+..+.+.-|.+.++++ ++.++||+..|.+..+..
T Consensus 176 i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~--G~~v~GP~paDt~F~~~~---- 249 (320)
T TIGR00557 176 LVEKLRILHADLRRDFGIARPRIAVAGLNPHAGEGGHLGREEIDIIIPALEALRAE--GIDLIGPLPADTLFHPAA---- 249 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHHHC--CCcccCCCCchhhccccc----
Confidence 99999999999995 9998 9999997 4665554445555666777888765 578999999997776543
Q ss_pred CCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecC------------CCCCHHHHHHHHHHH
Q psy14495 692 IPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILT------------SSATVRRIVNMTALC 759 (766)
Q Consensus 692 ~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~s------------r~~s~~~i~n~ialA 759 (766)
.|+.|.+|.--=|-|=|-+|++- |+.+. -+-+|+ |++-|| +-++..+..+++.+|
T Consensus 250 ------~~~~D~vvaMYHDQGliP~K~l~--F~~gV---NvTlGL--PiiRTS~DHGTAfDIAGkg~A~~~S~~~Ai~~A 316 (320)
T TIGR00557 250 ------LAKYDAVLAMYHDQGLIPLKYLG--FDEGV---NVTLGL--PFIRTSPDHGTAFDIAGKGKADPGSLIAAIKLA 316 (320)
T ss_pred ------ccCCCEEEECcccccchhheecc--cCcce---EEecCC--CeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHH
Confidence 37889999988889999999985 44332 255777 999988 458899999999998
Q ss_pred HHH
Q psy14495 760 VID 762 (766)
Q Consensus 760 ~~~ 762 (766)
+.+
T Consensus 317 ~~l 319 (320)
T TIGR00557 317 IEL 319 (320)
T ss_pred HHh
Confidence 765
No 39
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=98.50 E-value=1.6e-06 Score=93.47 Aligned_cols=255 Identities=19% Similarity=0.244 Sum_probs=149.9
Q ss_pred CCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcchhH----HH--HHH-HHHHccCC-CCHHHHHHHhhhCcH
Q psy14495 475 NLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKD----YW--KTY-LSMTNRKG-MIEQYAQLKMRKCNT 546 (766)
Q Consensus 475 g~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~~----~~--~~~-~~lr~~Kg-~s~~~A~~~~~~~s~ 546 (766)
..++||++|+++.++..++.++++. ++..++..+....+. .. ... ..+ ..| .|.+..+..+ .++
T Consensus 6 ~~~~pvv~Gd~~vl~~~~~~l~~~~----~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~--~~G~~s~~~G~aa~--~~l 77 (298)
T PF04166_consen 6 ELCTPVVIGDPKVLEYAAKALGLDV----NFRIIDSPEEAKEEPGRILVLDPGPLDAKV--KPGKPSAESGRAAF--ESL 77 (298)
T ss_dssp TSSEEEEEE-HHHHHHHHHHCT-------EEEEECTTSCCC-STTTEEEEEE-SSSSG---BTTB--GGGHHHHH--HHH
T ss_pred cCCCEEEEECHHHHHHHHHHcCCCc----eEEecCccccccccCCceeEEecccccCCC--CCCccCHHHHHHHH--HHH
Confidence 5689999999999999999998875 466666332211000 00 000 011 112 2333333222 255
Q ss_pred HHHHHHHHcCCccEEEecccCChHHHHH-HHH------HHhccCCCccceeEEEEEEeCCCeEEEEeccccC-----CCC
Q psy14495 547 LIGAMAIHKGNADGMICGILGSTKLHLN-YID------QIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINE-----NPN 614 (766)
Q Consensus 547 ~~A~~lV~~G~AD~lvsG~~~tT~~~l~-~~~------~iig~~~g~~~~s~~~i~~~~~~~~~l~D~g~Ni-----~P~ 614 (766)
-.|+.+.++|++|++|.+=++- ..|. ... ..+...-|.+. .+.+|...+=.+++.=..+-+ .-|
T Consensus 78 ~~A~~~~~~g~~dalVTaPinK--~a~~~aG~~~~GhTe~la~~~g~~~--~~mml~~~~lrv~~vT~HipL~~V~~~it 153 (298)
T PF04166_consen 78 EKAVELAKAGEIDALVTAPINK--EALKLAGFPFPGHTEYLAELTGTKD--VLMMLVSGKLRVALVTTHIPLKDVPKLIT 153 (298)
T ss_dssp HHHHHHHHTTSSSEEEE----H--HHHHHTT---SSHHHHHHHHTT-S----EEEEEETTEEEEESS-SS-GGGHHHH--
T ss_pred HHHHHHHHcCCCcEEEECCcCH--HHHHhCCCCCCChHHHHHHHhCCCC--eEEEEEcCCcEEEEeccCccHHHHHHhcC
Confidence 6799999999999999997663 3333 211 12222333222 223332222122222222211 347
Q ss_pred HHHHHHHHHHHHHHHHH-cCCC-CeEEEee----CccCCCCCCcchHHHHHHHHHHHccCCCceEEcccchhhccCHHHH
Q psy14495 615 AEELSEITILAAKKMFS-LGLK-PRVALLS----NSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELL 688 (766)
Q Consensus 615 ~e~L~~ia~~aa~~a~~-lGi~-PkVAlLS----~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG~l~~D~Al~~~~a 688 (766)
.+.+.+.+....+..+. ||++ ||+|++. ++|.|.-..+..+.+.-|.+.++++ ++.+.||+..|.+..+...
T Consensus 154 ~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~~~~--gi~v~GP~paDt~F~~~~~ 231 (298)
T PF04166_consen 154 KERILEKIRLLHKSLKRDFGIENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEARAE--GIDVFGPYPADTVFGKANR 231 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHHHHT--THEEEEEE-HHHHTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHHHhC--CCceECCCccHHhhhcchh
Confidence 88899999999999988 9998 9999997 4666654455566677788888764 6889999999999887765
Q ss_pred hhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecC------------CCCCHHHHHHHH
Q psy14495 689 HKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILT------------SSATVRRIVNMT 756 (766)
Q Consensus 689 ~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~s------------r~~s~~~i~n~i 756 (766)
|+.|++|.===|-|-|-+|++.. +.+. -+-+|+ |++-|| +-++..++.+++
T Consensus 232 ----------~~fD~vvaMYHDQGlip~K~l~f--~~gV---nvTlGL--P~iRTS~DHGTAfDIAGkg~A~~~s~~~Ai 294 (298)
T PF04166_consen 232 ----------GKFDAVVAMYHDQGLIPFKLLGF--DEGV---NVTLGL--PIIRTSPDHGTAFDIAGKGIADPSSMIEAI 294 (298)
T ss_dssp ----------TT-SEEEESSHHHHHHHHHHHCT--TTSE---EEEESS--SSEEEEESS-S-CCGTTTTTS-THHHHHHH
T ss_pred ----------ccCCEEEEeecccCccceeeccc--ccce---EEecCC--CeeeecCCCCchhhhhCCCCCChHHHHHHH
Confidence 77899999888999999999885 3222 256777 777665 457788888888
Q ss_pred HHHH
Q psy14495 757 ALCV 760 (766)
Q Consensus 757 alA~ 760 (766)
.+|+
T Consensus 295 ~~A~ 298 (298)
T PF04166_consen 295 KLAA 298 (298)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8875
No 40
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=98.46 E-value=5.3e-06 Score=90.39 Aligned_cols=207 Identities=15% Similarity=0.176 Sum_probs=138.9
Q ss_pred CHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHH------HHhccCCCccceeEEEEEEeCCCeEEEEe
Q psy14495 533 IEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYID------QIIGKKNKTNIYAAMSNLILMDRQLMLVD 606 (766)
Q Consensus 533 s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~------~iig~~~g~~~~s~~~i~~~~~~~~~l~D 606 (766)
|.+..+... ..+-.|++++++|++|++|.+=++- .++-.+.. ..+....|.+.+ +.+|-..+=.+.+.=
T Consensus 92 ~~~~G~aa~--~~l~~A~~~~~~G~~~alvTaPinK-~al~~aG~~f~GhTe~La~~~g~~~~--~Mml~~~~LrV~lvT 166 (326)
T PRK03371 92 QAQAGDLAY--RCVKRATELALRGEVQAIATAPLNK-EALHLAGHNYPGHTELLATLTHSRDY--AMVLYTDKLKVIHVS 166 (326)
T ss_pred CHHHHHHHH--HHHHHHHHHHHcCCCCEEEECCcCH-HHHHhCCCCCCCHHHHHHHHhCCCCe--EEEEecCCeEEEEee
Confidence 444444333 2556799999999999999997764 22222222 233333343221 222222221122222
Q ss_pred ccc-----cCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEee----CccCCCCCCcchHHHHHHHHHHHccCCCceEEcc
Q psy14495 607 THI-----NENPNAEELSEITILAAKKMFSLGLK-PRVALLS----NSNFGSNNNISAHKMRTALKLIQKQMPELEIDGE 676 (766)
Q Consensus 607 ~g~-----Ni~P~~e~L~~ia~~aa~~a~~lGi~-PkVAlLS----~s~~gs~~~~~~~~vreA~~llk~~~~~~~vdG~ 676 (766)
..+ --.-|.|.+.+.+....+..+.||++ ||+|++. ++|.|.-..+..+.+.-|.+.++++ ++.++||
T Consensus 167 ~HipLk~V~~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAi~~~~~~--G~~v~GP 244 (326)
T PRK03371 167 THIALRKFLDTLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEEIRIVTPAIEAMRAK--GMDVYGP 244 (326)
T ss_pred ccccHHHHHHHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHC--CCcccCC
Confidence 222 12457788899999999988889998 9999987 4666654456666677788888875 5778999
Q ss_pred cchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecC------------
Q psy14495 677 MNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILT------------ 744 (766)
Q Consensus 677 l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~s------------ 744 (766)
+..|.+..+... |+.|.+|.--=|-|=|-+|++-. +.+. -+-+|+ |++-||
T Consensus 245 ~paDt~F~~~~~----------~~~D~vvaMYHDQGliP~K~l~F--~~gV---NvTlGL--P~iRTS~DHGTAfDIAGk 307 (326)
T PRK03371 245 CPPDTVFLQAYE----------GQYDMVVAMYHDQGHIPLKLLGF--YDGV---NITAGL--PFIRTSADHGTAFDIAWT 307 (326)
T ss_pred CCchhhcccccc----------cCCCEEEEccccccchhheeccc--ccce---EEecCC--CeeEecCCCCchhhhhcC
Confidence 999977765443 78999999888999999999874 3322 255777 888887
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy14495 745 SSATVRRIVNMTALCVIDA 763 (766)
Q Consensus 745 r~~s~~~i~n~ialA~~~a 763 (766)
+.++..+..+++.+|+.++
T Consensus 308 G~A~~~S~~~Ai~lA~~~a 326 (326)
T PRK03371 308 GKAKSESMAVSIKLAMQLA 326 (326)
T ss_pred CcCCHHHHHHHHHHHHHhC
Confidence 6688899999999987653
No 41
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=98.39 E-value=7.7e-06 Score=89.44 Aligned_cols=284 Identities=16% Similarity=0.175 Sum_probs=171.5
Q ss_pred cEEEEecCC----CHHH-HHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCC-c--chhH--HHH
Q psy14495 452 KRIIYSEGE----EEKI-LRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFN-K--QYKD--YWK 521 (766)
Q Consensus 452 krIv~~e~~----d~~v-L~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~-~--~~~~--~~~ 521 (766)
++|++.-|+ -|++ +++.........+.++++|++..++...+..++++ ++..++..+. . .... ..+
T Consensus 5 p~iaIT~GDpaGIGpEIi~ka~~~~~~~~~~~~vviGd~~~l~~~~~~l~~~~----~~~~i~~~~~~~~~~~g~~~v~~ 80 (332)
T PRK00232 5 PRIAITPGDPAGIGPELVAKLLAQPDVRWPAELVVIADRALLERRAAILGLPL----DLRPYSPDAPAQPQEAGTLTVLP 80 (332)
T ss_pred CcEEEeCCCCcccHHHHHHHHHhccccccCCCEEEEECHHHHHHHHHHcCCCc----ceeeccchhhccccCCCceEEEe
Confidence 578887654 3444 33321111001257899999999998666656654 2444432110 0 0000 000
Q ss_pred -HHH-HHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHH------HHhccCCCccceeEEE
Q psy14495 522 -TYL-SMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYID------QIIGKKNKTNIYAAMS 593 (766)
Q Consensus 522 -~~~-~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~------~iig~~~g~~~~s~~~ 593 (766)
.+. .+.-. -.|.+..+... .++-.|+.++++|++|++|.+=++- .++..... ..+....|...+ +.
T Consensus 81 ~~~~~~~~~G-~~~~~~G~aa~--~~l~~A~~~~~~g~~~alvTaPI~K-~al~~aG~~~~GhTe~La~~~~~~~~--~M 154 (332)
T PRK00232 81 VPLAPAVVAG-QLDAANGRYVL--ETLARALDGCLAGEFDAICTAPVNK-GAINDAGIPFSGHTEFFAELSGTTGV--VM 154 (332)
T ss_pred cCcccCCCCC-CcCHHHHHHHH--HHHHHHHHHHHcCCCCEEEECCcCH-HHHHhCCCCCCCHHHHHHHHhCCCCe--EE
Confidence 000 01101 13444444433 2566799999999999999997764 22222211 122222232222 22
Q ss_pred EEEeCCCe-EEEEecccc-----CCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEee----CccCCCCCCcchHHHHHHHH
Q psy14495 594 NLILMDRQ-LMLVDTHIN-----ENPNAEELSEITILAAKKMFSLGLK-PRVALLS----NSNFGSNNNISAHKMRTALK 662 (766)
Q Consensus 594 i~~~~~~~-~~l~D~g~N-----i~P~~e~L~~ia~~aa~~a~~lGi~-PkVAlLS----~s~~gs~~~~~~~~vreA~~ 662 (766)
+|-. +++ +.+.=..+- -.-|.+.+.+.+....+..+.-|++ ||+|++. ++|.|.-..+..+.+.-|.+
T Consensus 155 ml~~-~~LrV~lvT~HipL~~V~~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~ 233 (332)
T PRK00232 155 MLAT-EGLRVALVTTHLPLRDVADAITPERLEEVIRILHADLRRKGIAEPRIAVCGLNPHAGEGGHFGREEIDIIIPALE 233 (332)
T ss_pred EEec-CCeEEEEeccchhHHHHHHHhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHH
Confidence 2222 222 222222221 1347788888899888888844998 9999987 46666544455566667778
Q ss_pred HHHccCCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEe
Q psy14495 663 LIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHI 742 (766)
Q Consensus 663 llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~ 742 (766)
.++++ ++.++||+..|.+..+.. .|+.|.+|.--=|-|=|-+|++-. +.+. -+-+|+ |++-
T Consensus 234 ~~~~~--G~~v~GP~paDt~F~~~~----------~~~~D~vvaMYHDQGliP~K~l~F--~~gV---NvTlGL--PiiR 294 (332)
T PRK00232 234 ELRAE--GINLVGPLPADTLFQPAY----------LGDADAVLAMYHDQGLPVLKYLGF--GRGV---NITLGL--PFIR 294 (332)
T ss_pred HHHhC--CCCcCCCCCchhhccccc----------cCCCCEEEECcccccchhheeccc--Ccce---EEecCC--CeeE
Confidence 88765 577899999987776443 378999999988999999999874 3222 255677 8988
Q ss_pred cC------------CCCCHHHHHHHHHHHHHHHhc
Q psy14495 743 LT------------SSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 743 ~s------------r~~s~~~i~n~ialA~~~a~~ 765 (766)
|| +-++..+..+++.+|+.++..
T Consensus 295 TS~DHGTAfDIAGkg~A~~~S~~~Ai~lA~~~a~~ 329 (332)
T PRK00232 295 TSVDHGTALDLAGKGIADVGSFITALNLAIRMAAN 329 (332)
T ss_pred eCCCCcchhhhhcCCCCCHHHHHHHHHHHHHHHhh
Confidence 88 678999999999999988764
No 42
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=97.93 E-value=0.0023 Score=69.54 Aligned_cols=270 Identities=16% Similarity=0.131 Sum_probs=159.5
Q ss_pred cEEEEecCC----CHH-HHHHHHHHHHcCCcEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEEC-CCCCcchhHHHHHHHH
Q psy14495 452 KRIIYSEGE----EEK-ILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIID-PDFNKQYKDYWKTYLS 525 (766)
Q Consensus 452 krIv~~e~~----d~~-vL~Aa~~a~~eg~~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid-~~~~~~~~~~~~~~~~ 525 (766)
++|++.-|+ -|+ ++++..... ..+.||++|++..++...+..++++.- .+.+++ ......
T Consensus 2 p~iaiT~GDpaGIGpEii~ka~~~~~--~~~~~vv~Gd~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~---------- 67 (307)
T PRK03946 2 KKIAISIGDINGIGLEIALKSHDEVS--KICEPLYCINEELLEQAAKLLNLKTPN--DFEIDFPVGLLFE---------- 67 (307)
T ss_pred CeEEEcCCCCcccHHHHHHHhccchh--ccCCeEEEECHHHHHHHHHHcCCCcce--EEEEeccCCcccC----------
Confidence 577777654 233 445422222 224699999999999766666765320 144444 211000
Q ss_pred HHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHHHHH------HHhccCCCccceeEEEEEEeCC
Q psy14495 526 MTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYID------QIIGKKNKTNIYAAMSNLILMD 599 (766)
Q Consensus 526 lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~~~~------~iig~~~g~~~~s~~~i~~~~~ 599 (766)
+.- -..|.+..+... ..+-.|+.++++|++|++|.+=++- .++..... ..+....|. . .+.+|-. +
T Consensus 68 ~~~-G~~~~~~g~aa~--~~l~~A~~~~~~G~~dalVTaPinK-~~l~~aG~~~~GhTe~la~~~g~-~--~~mml~~-~ 139 (307)
T PRK03946 68 IKP-GKVSAKSGAYSF--ESFKKAVELADSKEVDAIVTLPINK-KAWQKAGIPYKGHTDALRDRFKK-E--AIMMLGC-E 139 (307)
T ss_pred CCC-CccCHHHHHHHH--HHHHHHHHHHHcCCCCEEEECCcCH-HHHHhCCCCCCCHHHHHHHHHCC-C--eEEEEec-C
Confidence 000 012334333332 2455799999999999999997764 23222221 233333343 1 1222222 3
Q ss_pred Ce-EEEEeccccC-----CCCHHHHHHHHHHHHHHHHHcCCCCeEEEee----CccCCCCCCcchHHHHHHHHHHHccCC
Q psy14495 600 RQ-LMLVDTHINE-----NPNAEELSEITILAAKKMFSLGLKPRVALLS----NSNFGSNNNISAHKMRTALKLIQKQMP 669 (766)
Q Consensus 600 ~~-~~l~D~g~Ni-----~P~~e~L~~ia~~aa~~a~~lGi~PkVAlLS----~s~~gs~~~~~~~~vreA~~llk~~~~ 669 (766)
++ +.+.=..+-. .-|.+.+.+-+...... |. .||||++. ++|.|.-..+.. .+.-|.+.++++.
T Consensus 140 ~LrV~~vT~HipL~~V~~~it~~~i~~~i~~~~~~---l~-~PrIaV~gLNPHAGE~G~~G~EE~-iI~PAi~~~~~~~- 213 (307)
T PRK03946 140 ELFVALFTDHIPLKKVSQLIKVKKLVKFLLDFYKS---TK-FKKIGVLGLNPHAGDNGVIGGEEE-EIKKAIKKANQFL- 213 (307)
T ss_pred CeEEEEecccccHHHHHHHhCHHHHHHHHHHHHHH---hc-CCCEEEEeeCCCCCCCCCCCcchH-HHHHHHHHHHHhc-
Confidence 22 2222222211 23444444444333333 33 59999987 466555434444 5667778787432
Q ss_pred CceEE-cccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccEEecC----
Q psy14495 670 ELEID-GEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILT---- 744 (766)
Q Consensus 670 ~~~vd-G~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PVv~~s---- 744 (766)
++.++ ||+..|.+..+.. .|+-|.+|.--=|-|=|-+|++-. +.+. -+-+|+ |++-||
T Consensus 214 g~~~~~GP~paDt~F~~~~----------~~~~D~vlaMYHDQGlip~K~l~F--~~gV---nvTlGL--P~iRTSpDHG 276 (307)
T PRK03946 214 GFEIFFGPLVPDSAFTPNK----------RKKFNYYVAMYHDQGLAPLKALYF--DESI---NVSLNL--PILRTSVDHG 276 (307)
T ss_pred CCCcccCCcCchhhccccc----------ccCCCEEEECccccCchhheeecc--Ccce---EEecCC--CEeEecCCCC
Confidence 56788 9999987766433 378999999988999999999874 2222 356777 888887
Q ss_pred --------C-CCCHHHHHHHHHHHHHHHhcC
Q psy14495 745 --------S-SATVRRIVNMTALCVIDALSK 766 (766)
Q Consensus 745 --------r-~~s~~~i~n~ialA~~~a~~~ 766 (766)
+ -++..+..+++.+|+.++++|
T Consensus 277 TAfDIAGkg~~A~~~S~~~Ai~lA~~~~~~~ 307 (307)
T PRK03946 277 TAFDIAYKNAKANTKSYLNAIKYAINLLSKK 307 (307)
T ss_pred chhhhcCCCCcCCHHHHHHHHHHHHHHhhcC
Confidence 5 688999999999999998876
No 43
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.85 E-value=0.00015 Score=78.39 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=106.3
Q ss_pred CCCcEE------ecCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccC
Q psy14495 161 MKIPVF------HDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYK 234 (766)
Q Consensus 161 ~~~~~f------nDD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~ 234 (766)
.+|+++ |=-+..+-.++=.++.-+++..+..+.+.+++|+|+|..|.++|+.|...|. +++++|++.
T Consensus 112 ~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~---~V~v~~R~~---- 184 (287)
T TIGR02853 112 AGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGA---RVFVGARSS---- 184 (287)
T ss_pred CCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCC---EEEEEeCCH----
Confidence 468888 4445667777777788888888899999999999999999999999999996 488888741
Q ss_pred CCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCCCCCHHHHHhhccCcEEEeccCCCCccCHhhHhcccCcEEEE
Q psy14495 235 GRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIA 314 (766)
Q Consensus 235 ~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~~~~~ai~a 314 (766)
+.+...+..-.......+|.+.++++|++|=+.-.+.++++.++.|.+.-+|+=++-.--++..+.|.+.+-+++.+
T Consensus 185 ---~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~ 261 (287)
T TIGR02853 185 ---ADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLA 261 (287)
T ss_pred ---HHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEe
Confidence 11111111101111234688889999999865544678999999999888999887643455666666666678877
Q ss_pred cC
Q psy14495 315 TG 316 (766)
Q Consensus 315 tG 316 (766)
-|
T Consensus 262 ~g 263 (287)
T TIGR02853 262 PG 263 (287)
T ss_pred CC
Confidence 76
No 44
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.77 E-value=0.00017 Score=81.50 Aligned_cols=129 Identities=19% Similarity=0.237 Sum_probs=102.1
Q ss_pred cCCCcEEe----------cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 160 HMKIPVFH----------DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 160 ~~~~~~fn----------DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+.+|+|+ |..+||+--++-+++. .++..+...+++|+|+|.-|.+++..+...|.+ ++++|.+
T Consensus 161 ~l~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~---ViV~d~d 234 (413)
T cd00401 161 KLKFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGAR---VIVTEVD 234 (413)
T ss_pred CCCCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEECC
Confidence 36789985 7789999988877765 557788999999999999999999999999984 7777762
Q ss_pred ccccCCCCCCCcHHHHHhcccc--CCCCHHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEeccCCCCccCHhhHhc
Q psy14495 230 GVLYKGRSELMDSNKARFIKDT--TARTLSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALANPLPEILPEDIKS 306 (766)
Q Consensus 230 Glv~~~r~~~l~~~k~~~a~~~--~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~ 306 (766)
+.+...|+.. ...++.|+++.+|++|-+++ +++|+++.++.|.+.-++.-.+.+..|+.+.+...
T Consensus 235 ------------~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 235 ------------PICALQAAMEGYEVMTMEEAVKEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred ------------hhhHHHHHhcCCEEccHHHHHcCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 2333344321 12346788889999998886 67899999999999999988888877898887654
No 45
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.74 E-value=0.00025 Score=80.48 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=96.0
Q ss_pred cCCCcEEe----------cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 160 HMKIPVFH----------DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 160 ~~~~~~fn----------DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+.+|+|| |...||+--++-|+.. .++..+...+++|+|.|..|.++|..+...|.+ ++++|.+
T Consensus 171 ~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~---ViV~d~d 244 (425)
T PRK05476 171 ALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGAR---VIVTEVD 244 (425)
T ss_pred CCCCCEEecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhCCCE---EEEEcCC
Confidence 47899998 7779999777666654 346678999999999999999999999999974 8888863
Q ss_pred ccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEeccCCCCccCHhh
Q psy14495 230 GVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALANPLPEILPED 303 (766)
Q Consensus 230 Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~ 303 (766)
- .|. +...+. .....++.++++++|++|-+.+ .+.++.+.++.|.+.-+++-.+-+..|+..+.
T Consensus 245 p----~ra--~~A~~~----G~~v~~l~eal~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~ 309 (425)
T PRK05476 245 P----ICA--LQAAMD----GFRVMTMEEAAELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAA 309 (425)
T ss_pred c----hhh--HHHHhc----CCEecCHHHHHhCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHH
Confidence 1 110 111110 1123468899999999998876 67899999999999888888877766655553
No 46
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=97.69 E-value=0.0023 Score=69.29 Aligned_cols=282 Identities=16% Similarity=0.183 Sum_probs=167.1
Q ss_pred cEEEEecCC----CHHHHHHHHHHHHcCC-cEEEEEcCHHHHHHHHHhcCcCCCCCCCeEEECCCCCcchhHHHHHH---
Q psy14495 452 KRIIYSEGE----EEKILRAIQVVIDENL-AFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTY--- 523 (766)
Q Consensus 452 krIv~~e~~----d~~vL~Aa~~a~~eg~-~~~ILvG~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~--- 523 (766)
++|++.-|+ -|++ .+....+.+. ++++++||++.+++.++..+.... ..++++..... .+.....+
T Consensus 4 ~~iAit~GDPaGIGPEi--~~~~~~~~~~~~~~v~igd~~lL~~~~~~l~~~~~---~~~~~~~~~~~-~~~~~~~l~~l 77 (332)
T COG1995 4 PRIAITMGDPAGIGPEL--VALALAELPIKCELVVIGDKALLEAAAALLGLPVF---LLEAIPDPYEA-FAAGAIDLPDL 77 (332)
T ss_pred CceEecCCCcccCCHHH--HHHHhhhccCCCCeEEEcCHHHHHHHHHHhcCccc---ccccccchhhh-hhccCcceeec
Confidence 578887544 5777 2333333355 999999999999999887764321 11122111000 00000000
Q ss_pred -----HHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEecccCChHHHHH-HHHHH------hccCCCccceeE
Q psy14495 524 -----LSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLN-YIDQI------IGKKNKTNIYAA 591 (766)
Q Consensus 524 -----~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvsG~~~tT~~~l~-~~~~i------ig~~~g~~~~s~ 591 (766)
..++-++ .+...+.... ..+-.|+.+...|++|+++.+-++- ..+. +.... +.-+.+... .
T Consensus 78 ~~~~~~~v~~G~-~~~~~g~~~~--~~l~~A~~~a~~G~~~aivT~PI~K--~~l~~AG~~y~GhTe~LA~~s~~~~--~ 150 (332)
T COG1995 78 PLPLPAPVEAGQ-LSAANGAYVF--ETLKRAVELALAGEVDAIVTAPINK--EALNDAGIPYPGHTEFLAELSGTHD--P 150 (332)
T ss_pred ccCCcccccCCC-cCccccHHHH--HHHHHHHHHHhcCcccEEEecccCH--HHHHhcCCCCCCHHHHHHHHhCCCC--e
Confidence 0111111 1112221111 1333699999999999999987663 2232 22221 112223221 2
Q ss_pred EEEEEeCCCeEEEEecccc-----CCCCHHHHHHHHHHHHHHH-HHcCCC-CeEEEee----CccCCCCCCcchHHHHHH
Q psy14495 592 MSNLILMDRQLMLVDTHIN-----ENPNAEELSEITILAAKKM-FSLGLK-PRVALLS----NSNFGSNNNISAHKMRTA 660 (766)
Q Consensus 592 ~~i~~~~~~~~~l~D~g~N-----i~P~~e~L~~ia~~aa~~a-~~lGi~-PkVAlLS----~s~~gs~~~~~~~~vreA 660 (766)
+.++-.++=..++.=..+- -.-|.|.+.+.......-- +.||++ ||+|+.- ++|.|.-..+..+.+.=|
T Consensus 151 vMmla~~~Lrv~lvTtHipL~~V~~~iT~e~l~~~~~i~~~~L~~~fGi~~PriaVaGLNPHaGE~G~lG~EE~diI~Pa 230 (332)
T COG1995 151 VMMLAVPELRVALVTTHIPLKDVPDAITPELLLEVLRILDKDLRKKFGIAEPRIAVAGLNPHAGEGGLLGREEIDIIIPA 230 (332)
T ss_pred EEEeeccccEEEEEeecccHHHHHhhhCHHHHHHHHHHHHHHHHHhhCCCCcceEEeccCCCCCcCCCCCchhHHHHHHH
Confidence 2222233311222222221 1346677777777666666 569998 9999975 477777666677777778
Q ss_pred HHHHHccCCCceEEcccchhhccCHHHHhhhCCCCccCCcccEEEeCCcchhHHHHHHHHhhcCCccccccccccCCccE
Q psy14495 661 LKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPI 740 (766)
Q Consensus 661 ~~llk~~~~~~~vdG~l~~D~Al~~~~a~~K~~~s~vaG~AdVLV~Pnl~aGNi~~K~l~~~~~~~~~~G~iLlGl~~PV 740 (766)
.+.+|++ ++.+.||+..|.+.-+...+. .|.+++=-=|-|-|.+|.+- |+.+. -+-+|+ |.
T Consensus 231 ie~aR~~--Gi~~~GPlpADT~F~~~~~~~----------~DavlaMYHDQgliplK~l~--Fd~~V---NvtlGL--Pf 291 (332)
T COG1995 231 IEEARAE--GIDLVGPLPADTLFHPAYLAN----------YDAVLAMYHDQGLIPLKYLG--FDRGV---NVTLGL--PF 291 (332)
T ss_pred HHHHHHh--CCcccCCCCcchhhhhhhhcc----------CCEEEEeeccccchhhhhhc--cccce---EEecCC--Ce
Confidence 8888876 688999999998887765532 27777766788999999976 44332 255676 88
Q ss_pred EecC------------CCCCHHHHHHHHHHHHHHHhc
Q psy14495 741 HILT------------SSATVRRIVNMTALCVIDALS 765 (766)
Q Consensus 741 v~~s------------r~~s~~~i~n~ialA~~~a~~ 765 (766)
+.|| +-++..+.+.++.+|+.++..
T Consensus 292 iRTS~DHGTAfDiAgkGiA~~~S~~~Ai~lA~~l~~~ 328 (332)
T COG1995 292 IRTSVDHGTAFDIAGKGIADPGSLIAAIKLAAKLAAK 328 (332)
T ss_pred eeecCCccchhhhhcCCcCCchHHHHHHHHHHHHHhh
Confidence 8877 347788889999999988764
No 47
>PLN02494 adenosylhomocysteinase
Probab=97.56 E-value=0.00072 Score=77.26 Aligned_cols=130 Identities=18% Similarity=0.265 Sum_probs=101.6
Q ss_pred cCCCcEEe----------cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 160 HMKIPVFH----------DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 160 ~~~~~~fn----------DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+.+|+++ |...||+--++-|++ |.++..+...+++|+|.|.-|.++|..+...|+. ++++|.+
T Consensus 213 ~L~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~---VIV~e~d 286 (477)
T PLN02494 213 TLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKAAGAR---VIVTEID 286 (477)
T ss_pred CCCCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence 37899998 567999998888887 4577779999999999999999999999999984 8888764
Q ss_pred ccccCCCCCCCcHHHHHhcc--ccCCCCHHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEeccCCCCccCHhhHhc
Q psy14495 230 GVLYKGRSELMDSNKARFIK--DTTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALANPLPEILPEDIKS 306 (766)
Q Consensus 230 Glv~~~r~~~l~~~k~~~a~--~~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~ 306 (766)
.. +...|. .....++.|+++.+|+++=+++ .++++++.++.|.+.-++.-.+.+.+|+.-+...+
T Consensus 287 p~------------r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~ 354 (477)
T PLN02494 287 PI------------CALQALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLET 354 (477)
T ss_pred ch------------hhHHHHhcCCeeccHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhh
Confidence 21 111111 1112368999999999997665 56789999999999999999999888887766554
Q ss_pred c
Q psy14495 307 V 307 (766)
Q Consensus 307 ~ 307 (766)
+
T Consensus 355 ~ 355 (477)
T PLN02494 355 Y 355 (477)
T ss_pred c
Confidence 3
No 48
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.54 E-value=0.00045 Score=75.11 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=97.1
Q ss_pred CCCcEEe--cC----CchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccC
Q psy14495 161 MKIPVFH--DD----QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYK 234 (766)
Q Consensus 161 ~~~~~fn--DD----~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~ 234 (766)
.++.+|+ ++ +.-.-.++-.++..+++..+..+...|++|+|+|.+|..++..|...|. +++++|++-
T Consensus 113 ~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga---~V~v~~r~~---- 185 (296)
T PRK08306 113 TNRKLVELFERDDVAILNSIPTAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGA---NVTVGARKS---- 185 (296)
T ss_pred CCCeEEEEeccchhhhhccHhHHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEECCH----
Confidence 3688875 11 1122223333566677888888999999999999999999999999995 499998851
Q ss_pred CCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCCCCCHHHHHhhccCcEEEeccCCCCccCHhhHhcccCcEEEE
Q psy14495 235 GRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIA 314 (766)
Q Consensus 235 ~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~~~~~ai~a 314 (766)
+.....+..-++.....++.+.++++|++|-+.....+++++++.|.+..+|+=++...-.|..+.+.+.+-+++-+
T Consensus 186 ---~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~~ 262 (296)
T PRK08306 186 ---AHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALLA 262 (296)
T ss_pred ---HHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEEE
Confidence 01111111111111224688889999999987656779999999999988888776543345554444333345555
Q ss_pred cC
Q psy14495 315 TG 316 (766)
Q Consensus 315 tG 316 (766)
+|
T Consensus 263 ~~ 264 (296)
T PRK08306 263 PG 264 (296)
T ss_pred CC
Confidence 55
No 49
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.44 E-value=0.00089 Score=75.61 Aligned_cols=127 Identities=20% Similarity=0.218 Sum_probs=97.4
Q ss_pred CCCcEEe----------cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 161 MKIPVFH----------DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 161 ~~~~~fn----------DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
+.+|+|+ |...||+--++-+++ |.++..+...+++|+|.|..|.++|..+...|.. ++++|.+-
T Consensus 155 L~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~---ViV~d~dp 228 (406)
T TIGR00936 155 LKFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARGMGAR---VIVTEVDP 228 (406)
T ss_pred CCCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCE---EEEEeCCh
Confidence 6899997 778999987776655 4567778999999999999999999999999975 88888631
Q ss_pred cccCCCCCCCcHHHHHhccc--cCCCCHHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEeccCCCCccCHhhHh
Q psy14495 231 VLYKGRSELMDSNKARFIKD--TTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALANPLPEILPEDIK 305 (766)
Q Consensus 231 lv~~~r~~~l~~~k~~~a~~--~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~ 305 (766)
.+...|+. ....++.|+++++|++|-+.+ .+.++.+.+..|.+.-++.-.+-...|+.-+...
T Consensus 229 ------------~r~~~A~~~G~~v~~leeal~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~ 294 (406)
T TIGR00936 229 ------------IRALEAAMDGFRVMTMEEAAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALE 294 (406)
T ss_pred ------------hhHHHHHhcCCEeCCHHHHHhcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHH
Confidence 11111211 122357889999999987765 6789999999999999999888887777665543
No 50
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.43 E-value=0.00022 Score=68.44 Aligned_cols=97 Identities=26% Similarity=0.403 Sum_probs=71.6
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc----ccCCCCHHHHhccCcEE
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK----DTTARTLSDIIPNADIF 266 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~----~~~~~~L~e~i~~~~vl 266 (766)
++++.|++|+|||.+|-+++..|.+.|++ +|+++++. .+| .......|-. -....++.+.++++|++
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~--~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAK--EITIVNRT----PER---AEALAEEFGGVNIEAIPLEDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSS--EEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCC--EEEEEECC----HHH---HHHHHHHcCccccceeeHHHHHHHHhhCCeE
Confidence 78999999999999999999999999988 89999973 212 2333334411 11335677788889999
Q ss_pred EecCCCC--CCCHHHHHhhccCc-EEEeccCCC
Q psy14495 267 LGLSVSG--VLKKEMVLQMAKNP-IILALANPL 296 (766)
Q Consensus 267 iG~S~~g--~ft~evv~~M~~~P-iIfaLsNPt 296 (766)
|-++..| .++++.++...++. +||=||+|.
T Consensus 80 I~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 80 INATPSGMPIITEEMLKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp EE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred EEecCCCCcccCHHHHHHHHhhhhceeccccCC
Confidence 9987633 89999988876544 999999995
No 51
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.34 E-value=0.0028 Score=67.32 Aligned_cols=132 Identities=15% Similarity=0.112 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEE-EEcCCccccCCCCCCCcHHHHH--hc
Q psy14495 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIF-VTDLAGVLYKGRSELMDSNKAR--FI 248 (766)
Q Consensus 172 GTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~-~~D~~Glv~~~r~~~l~~~k~~--~a 248 (766)
-||-=+.-++-.+++..+.+++..||+|.|-|..|...|++|.+.|.+ ++ +.|++|-++... .|+..+.. +.
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~Gak---vvaVsD~~G~i~~~~--Gld~~~l~~l~~ 90 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAK---VVTLSDSKGYVYDPD--GFTGEKLAELKE 90 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEECCCceEECCC--CCCHHHHHHHHH
Confidence 466666777778888889999999999999999999999999999976 66 999999999865 45433221 00
Q ss_pred cccC----------------CCCHHHHhc-cCcEEEecCCCCCCCHHHHHhhc--cCcEEEeccC-CCCccCHhhHhccc
Q psy14495 249 KDTT----------------ARTLSDIIP-NADIFLGLSVSGVLKKEMVLQMA--KNPIILALAN-PLPEILPEDIKSVR 308 (766)
Q Consensus 249 ~~~~----------------~~~L~e~i~-~~~vliG~S~~g~ft~evv~~M~--~~PiIfaLsN-Pt~E~~pe~a~~~~ 308 (766)
++.. ..+-.|... .+|||+-+...+.+|++-+..+. +-.+|.--+| |+.. .+++.+..+
T Consensus 91 ~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~-~a~~~L~~r 169 (254)
T cd05313 91 IKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA-EAIEVFRQA 169 (254)
T ss_pred HHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCH-HHHHHHHHC
Confidence 1100 011222233 36999999989999999999996 6788888888 7532 234444444
Q ss_pred C
Q psy14495 309 N 309 (766)
Q Consensus 309 ~ 309 (766)
|
T Consensus 170 G 170 (254)
T cd05313 170 G 170 (254)
T ss_pred C
Confidence 3
No 52
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.26 E-value=0.0022 Score=67.22 Aligned_cols=121 Identities=18% Similarity=0.272 Sum_probs=89.1
Q ss_pred chhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHH-hcc
Q psy14495 171 HGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKAR-FIK 249 (766)
Q Consensus 171 qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~-~a~ 249 (766)
.-||-=+..++-.+++..+.++++.||+|.|-|..|..++++|.+.|.+ =+.+.|++|-++... +++..+.. +.+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~--vv~v~D~~g~~~~~~--Gld~~~l~~~~~ 83 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAK--VVAVSDSDGTIYNPD--GLDVPALLAYKK 83 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 4466667778888888888999999999999999999999999999977 355999999999865 34432211 111
Q ss_pred cc----C-----CCCHHHHhc-cCcEEEecCCCCCCCHHHHHhhccCcEEEeccC-CC
Q psy14495 250 DT----T-----ARTLSDIIP-NADIFLGLSVSGVLKKEMVLQMAKNPIILALAN-PL 296 (766)
Q Consensus 250 ~~----~-----~~~L~e~i~-~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsN-Pt 296 (766)
.. + .-+-.+.+. .+||||=++.++..|++-+..+. -++|.--+| |.
T Consensus 84 ~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~-a~~I~egAN~~~ 140 (227)
T cd01076 84 EHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIK-AKIIVEAANGPT 140 (227)
T ss_pred hcCCcccCCCceecCCccceeecccEEEecCccCccCHHHHhhce-eeEEEeCCCCCC
Confidence 10 0 011223333 36999999988999999999986 677777777 54
No 53
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.23 E-value=0.002 Score=69.64 Aligned_cols=146 Identities=18% Similarity=0.292 Sum_probs=96.6
Q ss_pred cCCCccccCCCC-CCHHHHHHHHHHhC--CCcccc--cc---ccCCCCchHHHHHHHhhcCCCcEEecCCc------hhH
Q psy14495 109 AGIDVFDLEINE-TDPDKLCDIIFSLE--PTFGGI--NL---EDIKAPECFYIEKKLRNHMKIPVFHDDQH------GTA 174 (766)
Q Consensus 109 ~gi~~l~v~~~~-~~~~~~v~~v~~~~--p~~g~i--~~---ED~~~~~af~il~~~~~~~~~~~fnDD~q------GTa 174 (766)
-||++.-+.+.. -..++|.+.++.+. |++-+| |+ +++......+-++..++--.+-..| +-+ +.+
T Consensus 61 ~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n-~G~l~~~~~~~~ 139 (283)
T PRK14192 61 VGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLG-FGRMAMGEAAYG 139 (283)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccc-cCccccCCCccc
Confidence 357754444422 23566777776664 445333 22 3433322222233333322222334 222 346
Q ss_pred HHHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCC
Q psy14495 175 IIVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTA 253 (766)
Q Consensus 175 ~v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~ 253 (766)
-.|-.|++..|+..+.+++..++|++|+|- +|-.++.+|.+.|.+ +++++++ .
T Consensus 140 p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gat---Vtv~~~~-------t---------------- 193 (283)
T PRK14192 140 SATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANAT---VTICHSR-------T---------------- 193 (283)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCE---EEEEeCC-------c----------------
Confidence 677799999999999999999999999997 999999999999874 8988872 1
Q ss_pred CCHHHHhccCcEEEecCC-CCCCCHHHHH
Q psy14495 254 RTLSDIIPNADIFLGLSV-SGVLKKEMVL 281 (766)
Q Consensus 254 ~~L~e~i~~~~vliG~S~-~g~ft~evv~ 281 (766)
.+|.+.++++|++|-+.+ ++.++.++++
T Consensus 194 ~~L~~~~~~aDIvI~AtG~~~~v~~~~lk 222 (283)
T PRK14192 194 QNLPELVKQADIIVGAVGKPELIKKDWIK 222 (283)
T ss_pred hhHHHHhccCCEEEEccCCCCcCCHHHcC
Confidence 137777889999998886 7788887754
No 54
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.18 E-value=0.0025 Score=72.58 Aligned_cols=132 Identities=20% Similarity=0.307 Sum_probs=90.8
Q ss_pred chHHHHHHHhhcCCCcEEecCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 149 ECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 149 ~af~il~~~~~~~~~~~fnDD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
.||..=++.|.+..|. .|.-++..+++-.|.+..+. +.+.+++|+|+|..|..++..|...|+. +++++|+
T Consensus 142 ~a~~~~k~vr~~t~i~------~~~vSv~~~Av~la~~~~~~-l~~~~VlViGaG~iG~~~a~~L~~~G~~--~V~v~~r 212 (417)
T TIGR01035 142 KAFSVGKRVRTETDIS------AGAVSISSAAVELAERIFGS-LKGKKALLIGAGEMGELVAKHLLRKGVG--KILIANR 212 (417)
T ss_pred HHHHHhhhhhhhcCCC------CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECChHHHHHHHHHHHHCCCC--EEEEEeC
Confidence 4455555555443322 56667777777667766553 8889999999999999999999999976 7999888
Q ss_pred CccccCCCCCCCcHHHHHhcc-ccCCCCHHHHhccCcEEEecCC--CCCCCHHHHHhhcc---Cc-EEEeccCCC
Q psy14495 229 AGVLYKGRSELMDSNKARFIK-DTTARTLSDIIPNADIFLGLSV--SGVLKKEMVLQMAK---NP-IILALANPL 296 (766)
Q Consensus 229 ~Glv~~~r~~~l~~~k~~~a~-~~~~~~L~e~i~~~~vliG~S~--~g~ft~evv~~M~~---~P-iIfaLsNPt 296 (766)
.. .| .......+-. .....++.+++.++|++|-+.+ ...+++++++.+.. +| +|+-+++|.
T Consensus 213 s~----~r---a~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 213 TY----ER---AEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred CH----HH---HHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 32 11 1111111111 1122467888889999998864 45799999998752 45 888999885
No 55
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.16 E-value=0.0057 Score=70.17 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=92.6
Q ss_pred cCCCcEEecCCchhHHHH-------HHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccc
Q psy14495 160 HMKIPVFHDDQHGTAIIV-------GSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVL 232 (766)
Q Consensus 160 ~~~~~~fnDD~qGTa~v~-------lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv 232 (766)
.+.|||+|-+--.|-.+. ++.+=..+|.++..+...+++|+|.|..|.++|..+...|+. ++++|++-.
T Consensus 213 ~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~---ViV~e~dp~- 288 (476)
T PTZ00075 213 ELLFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGAR---VVVTEIDPI- 288 (476)
T ss_pred CCCceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCch-
Confidence 378999985443333322 333345567778899999999999999999999999999974 888876411
Q ss_pred cCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEeccCCCCccC
Q psy14495 233 YKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALANPLPEIL 300 (766)
Q Consensus 233 ~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLsNPt~E~~ 300 (766)
+ .+.... ......++.++++.+|+++-+.+ .+.|+++.++.|.+.-++.-.+....|+.
T Consensus 289 ---~--a~~A~~----~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~Ei~ 348 (476)
T PTZ00075 289 ---C--ALQAAM----EGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQ 348 (476)
T ss_pred ---h--HHHHHh----cCceeccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCchHHh
Confidence 1 001111 11123468999999999997765 78999999999999999988887765554
No 56
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.15 E-value=0.0061 Score=69.54 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHH------
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKAR------ 246 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~------ 246 (766)
||-=+.-++-.+++..|.+|+..||+|-|.|..|...|+.|.+.|.+ =+-+-|++|-|+... .++..+..
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~Gak--vVavSD~~G~i~d~~--Gld~~~l~~l~~~k 282 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAK--VVTISGPDGYIYDPD--GISGEKIDYMLELR 282 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEEcCCceEECCC--CCCHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999987 477889999998765 46554421
Q ss_pred ---------hcccc-C--CCCHHHHhc-cCcEEEecCCCCCCCHHHHHhhc--cCcEEEeccCC
Q psy14495 247 ---------FIKDT-T--ARTLSDIIP-NADIFLGLSVSGVLKKEMVLQMA--KNPIILALANP 295 (766)
Q Consensus 247 ---------~a~~~-~--~~~L~e~i~-~~~vliG~S~~g~ft~evv~~M~--~~PiIfaLsNP 295 (766)
|.... . .-+-.+... .+|||+-+...+.+|++-++.+. .-.+|.=-+|=
T Consensus 283 ~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~ 346 (445)
T PRK14030 283 ASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNM 346 (445)
T ss_pred HhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCC
Confidence 11110 0 001122222 36999999989999999999995 67888888883
No 57
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.11 E-value=0.0052 Score=63.92 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHH-HHhcccc
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNK-ARFIKDT 251 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k-~~~a~~~ 251 (766)
||-=+..++-.+++..+.+|+..||+|.|-|..|..+|++|.+.|.. -+.+.|++|-++.. + ++..+ ..+.++.
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~--vV~vsD~~g~i~~~-G--ld~~~l~~~~~~~ 76 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGK--VLAVSDPDGYIYDP-G--ITTEELINYAVAL 76 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCE--EEEEEcCCCcEECC-C--CCHHHHHHHHHhh
Confidence 44445566777888889999999999999999999999999999976 68999999998876 4 43321 2222211
Q ss_pred ----C--C---CCHHHHhc-cCcEEEecCCCCCCCHHHHHhhccCcEEEeccC-CCCccCHhhHhcccC
Q psy14495 252 ----T--A---RTLSDIIP-NADIFLGLSVSGVLKKEMVLQMAKNPIILALAN-PLPEILPEDIKSVRN 309 (766)
Q Consensus 252 ----~--~---~~L~e~i~-~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsN-Pt~E~~pe~a~~~~~ 309 (766)
. . .+=.+.+. .+||||-+...+.+|++..+.+. -++|..-+| |+.+ ..++.++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l~-a~~V~e~AN~p~t~-~a~~~L~~~G 143 (217)
T cd05211 77 GGSARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLK-AKVVAEGANNPTTD-EALRILHERG 143 (217)
T ss_pred CCccccCcccccCcccceeccccEEeeccccCccChhhHhhcC-ccEEEeCCCCCCCH-HHHHHHHHCC
Confidence 0 0 01112222 46999999988999999999987 667776666 7754 4555555544
No 58
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.08 E-value=0.0025 Score=72.67 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc-
Q psy14495 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD- 250 (766)
Q Consensus 172 GTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~- 250 (766)
+..+++.+|+--+.+..+ ++.+.+++|+|+|..|..++..|...|.. +++++|+.. .| .......|...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~~G~~--~V~v~~r~~----~r---a~~la~~~g~~~ 230 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAEKGVR--KITVANRTL----ER---AEELAEEFGGEA 230 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHHCCCC--eEEEEeCCH----HH---HHHHHHHcCCcE
Confidence 355666666554444444 68889999999999999999999998976 799888741 11 11122222111
Q ss_pred cCCCCHHHHhccCcEEEecCC--CCCCCHHHHHhhc-----cCcEEEeccCCC
Q psy14495 251 TTARTLSDIIPNADIFLGLSV--SGVLKKEMVLQMA-----KNPIILALANPL 296 (766)
Q Consensus 251 ~~~~~L~e~i~~~~vliG~S~--~g~ft~evv~~M~-----~~PiIfaLsNPt 296 (766)
.+..++.+++.++|++|-+++ ...+++++++.+. ...+++=||+|.
T Consensus 231 ~~~~~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 231 IPLDELPEALAEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred eeHHHHHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 112457778888999998875 4579999999874 235888999985
No 59
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.03 E-value=0.0038 Score=62.44 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=71.4
Q ss_pred HHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCC
Q psy14495 177 VGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTART 255 (766)
Q Consensus 177 ~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~ 255 (766)
+..+.+-.++-...+|++.|++|+|+|. .|..+|..|.+.|.. +|+++++ . .+
T Consensus 27 ~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~---V~v~~r~----------~-------------~~ 80 (168)
T cd01080 27 TPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNAT---VTVCHSK----------T-------------KN 80 (168)
T ss_pred hHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCE---EEEEECC----------c-------------hh
Confidence 3334444555556789999999999997 699999999999874 9988873 0 24
Q ss_pred HHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEeccCCC
Q psy14495 256 LSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALANPL 296 (766)
Q Consensus 256 L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLsNPt 296 (766)
|.+.++.+|++|.+.. +..|++++++ +.-+|+=++.|.
T Consensus 81 l~~~l~~aDiVIsat~~~~ii~~~~~~---~~~viIDla~pr 119 (168)
T cd01080 81 LKEHTKQADIVIVAVGKPGLVKGDMVK---PGAVVIDVGINR 119 (168)
T ss_pred HHHHHhhCCEEEEcCCCCceecHHHcc---CCeEEEEccCCC
Confidence 7888999999998876 6799999764 367888888885
No 60
>PLN02477 glutamate dehydrogenase
Probab=97.02 E-value=0.013 Score=66.47 Aligned_cols=179 Identities=20% Similarity=0.257 Sum_probs=115.3
Q ss_pred HHHHHH-HHHHhCCCccc---cccccCCCCc--hHHHHHHHhh--------cCCCcEE----ecCCchhHHHHHHHHHHH
Q psy14495 123 PDKLCD-IIFSLEPTFGG---INLEDIKAPE--CFYIEKKLRN--------HMKIPVF----HDDQHGTAIIVGSAILNG 184 (766)
Q Consensus 123 ~~~~v~-~v~~~~p~~g~---i~~ED~~~~~--af~il~~~~~--------~~~~~~f----nDD~qGTa~v~lA~ll~a 184 (766)
.+.|.. +++.+.|--|. |-=+|++..- ---+.++|+. -.+-|+. .+--.-||-=+..++-.+
T Consensus 117 ~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~ 196 (410)
T PLN02477 117 LERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEAL 196 (410)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHH
Confidence 444444 34555554432 3344554331 1224567765 1223432 233455787778888888
Q ss_pred HhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEE-EEcCCccccCCCCCCCcHHHH-Hhcccc---------CC
Q psy14495 185 LKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIF-VTDLAGVLYKGRSELMDSNKA-RFIKDT---------TA 253 (766)
Q Consensus 185 l~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~-~~D~~Glv~~~r~~~l~~~k~-~~a~~~---------~~ 253 (766)
++..|.+|+..||+|.|.|..|...|++|.+.|.+ ++ +.|++|-++... .|+..+. .+.+.. ..
T Consensus 197 ~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~Gak---VVaVsD~~G~iy~~~--GLD~~~L~~~k~~~g~l~~~~~a~~ 271 (410)
T PLN02477 197 LAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGK---IVAVSDITGAVKNEN--GLDIPALRKHVAEGGGLKGFPGGDP 271 (410)
T ss_pred HHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCE---EEEEECCCCeEECCC--CCCHHHHHHHHHhcCchhccccceE
Confidence 98899999999999999999999999999999976 66 999999999865 4543221 111110 01
Q ss_pred CCHHHHhc-cCcEEEecCCCCCCCHHHHHhhccCcEEEeccC-CC-CccCHhhHhcccC
Q psy14495 254 RTLSDIIP-NADIFLGLSVSGVLKKEMVLQMAKNPIILALAN-PL-PEILPEDIKSVRN 309 (766)
Q Consensus 254 ~~L~e~i~-~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsN-Pt-~E~~pe~a~~~~~ 309 (766)
-+-.+.+. .+||||-+..++.+|++-+..+ +-.+|.--+| |+ || +++.++.+|
T Consensus 272 i~~~e~l~~~~DvliP~Al~~~I~~~na~~i-~ak~I~egAN~p~t~e--a~~~L~~rG 327 (410)
T PLN02477 272 IDPDDILVEPCDVLIPAALGGVINKENAADV-KAKFIVEAANHPTDPE--ADEILRKKG 327 (410)
T ss_pred ecCccceeccccEEeeccccccCCHhHHHHc-CCcEEEeCCCCCCCHH--HHHHHHHCC
Confidence 12223333 4699999998899999999986 5677777777 65 22 334444443
No 61
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.93 E-value=0.0033 Score=60.84 Aligned_cols=135 Identities=20% Similarity=0.278 Sum_probs=84.3
Q ss_pred HHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc---ccCCCC
Q psy14495 179 SAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK---DTTART 255 (766)
Q Consensus 179 A~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~---~~~~~~ 255 (766)
.|+.+|++..+.++++.+++|+|+|..|..+++.|.+.|. ++++++|++- +........+.. .....+
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~--~~v~v~~r~~-------~~~~~~~~~~~~~~~~~~~~~ 74 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGA--AKIVIVNRTL-------EKAKALAERFGELGIAIAYLD 74 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCC--CEEEEEcCCH-------HHHHHHHHHHhhcccceeecc
Confidence 5889999998888999999999999999999999998873 3799888741 112232223322 123356
Q ss_pred HHHHhccCcEEEecCCCCCC-CHHH---HHhhccCcEEEecc-CCCCccCHhhHhcccCcEEEEcCCCCCcccc
Q psy14495 256 LSDIIPNADIFLGLSVSGVL-KKEM---VLQMAKNPIILALA-NPLPEILPEDIKSVRNDAIIATGRSDYPNQV 324 (766)
Q Consensus 256 L~e~i~~~~vliG~S~~g~f-t~ev---v~~M~~~PiIfaLs-NPt~E~~pe~a~~~~~~ai~atG~~~~p~Q~ 324 (766)
+.++++++|++|-+..++.. .++. ...+.+..+|+-+| +|....-.+.+.+. .+.+-.|.+.++.|+
T Consensus 75 ~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~--g~~~v~g~~~~~~q~ 146 (155)
T cd01065 75 LEELLAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARAL--GAKTIDGLEMLVYQA 146 (155)
T ss_pred hhhccccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHC--CCceeCCHHHHHHHH
Confidence 77778899999977654432 1111 12345677888775 44433111222222 244556765444443
No 62
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.89 E-value=0.013 Score=66.78 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=118.3
Q ss_pred HHHHHH-HHHHhCCCccc---cccccCCCC--chHHHHHHHhhc--------CCCcE-E---ecCCchhHHHHHHHHHHH
Q psy14495 123 PDKLCD-IIFSLEPTFGG---INLEDIKAP--ECFYIEKKLRNH--------MKIPV-F---HDDQHGTAIIVGSAILNG 184 (766)
Q Consensus 123 ~~~~v~-~v~~~~p~~g~---i~~ED~~~~--~af~il~~~~~~--------~~~~~-f---nDD~qGTa~v~lA~ll~a 184 (766)
...|.. ++..+.+..|. |-=.|++.- .---+.+.|+.- .+-|+ + .+--.-||-=+..++-.+
T Consensus 148 l~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~ 227 (454)
T PTZ00079 148 VMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEV 227 (454)
T ss_pred HHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHH
Confidence 455655 57777766664 677777732 222345666642 01121 1 111234777778888899
Q ss_pred HhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEE-EEcCCccccCCCCCCCcHHHHHhcc--c-cCCCCHH---
Q psy14495 185 LKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIF-VTDLAGVLYKGRSELMDSNKARFIK--D-TTARTLS--- 257 (766)
Q Consensus 185 l~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~-~~D~~Glv~~~r~~~l~~~k~~~a~--~-~~~~~L~--- 257 (766)
++..+.+|+..||+|-|.|..|...|+.|.+.|.+ ++ +.|++|-|+... .++..+..+.. + ....+|.
T Consensus 228 l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~Gak---VVavSD~~G~iy~~~--Gld~~~l~~l~~~k~~~~g~i~~~~ 302 (454)
T PTZ00079 228 LKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAK---VLTMSDSDGYIHEPN--GFTKEKLAYLMDLKNVKRGRLKEYA 302 (454)
T ss_pred HHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEEcCCCcEECCC--CCCHHHHHHHHHHHhhcCCcHHhhh
Confidence 99999999999999999999999999999999977 55 999999999875 56554431110 0 0001111
Q ss_pred ------------HHhc-cCcEEEecCCCCCCCHHHHHhhc--cCcEEEeccC-CCCccCHhhHhccc
Q psy14495 258 ------------DIIP-NADIFLGLSVSGVLKKEMVLQMA--KNPIILALAN-PLPEILPEDIKSVR 308 (766)
Q Consensus 258 ------------e~i~-~~~vliG~S~~g~ft~evv~~M~--~~PiIfaLsN-Pt~E~~pe~a~~~~ 308 (766)
+... .+|||+-+...+.+|++-.+.+. .-.+|.--+| |+.. .+++.++.+
T Consensus 303 ~~~~~a~~~~~~~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~~~L~~~ 368 (454)
T PTZ00079 303 KHSSTAKYVPGKKPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTI-EATHLFKKN 368 (454)
T ss_pred hccCCcEEeCCcCcccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHC
Confidence 1111 36999999989999999999883 5667777777 6521 233444443
No 63
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.86 E-value=0.0044 Score=67.82 Aligned_cols=173 Identities=18% Similarity=0.241 Sum_probs=106.6
Q ss_pred hHHHHhhhcCCCccccCCCCCCHHHHHHHHHHhCCC---ccc--cccccCCCCchHHHHHHHhhcCCCcEEecCCchhHH
Q psy14495 101 KAVLFKKFAGIDVFDLEINETDPDKLCDIIFSLEPT---FGG--INLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAI 175 (766)
Q Consensus 101 K~~ly~~~~gi~~l~v~~~~~~~~~~v~~v~~~~p~---~g~--i~~ED~~~~~af~il~~~~~~~~~~~fnDD~qGTa~ 175 (766)
=..||..++|+|.+=+| .++++--||.-|-. .|. --++-. -.+||++=++.|.+..+. +|..+
T Consensus 93 ~~HLf~Va~GLdS~v~G-----E~qIlgQvk~A~~~a~~~g~~~~~L~~l-f~~a~~~~k~vr~et~i~------~~~~s 160 (311)
T cd05213 93 VRHLFRVASGLDSMVVG-----ETQILGQVKNAYKLAKEAGTSGKLLNRL-FQKAIKVGKRVRTETGIS------RGAVS 160 (311)
T ss_pred HHHHHHHHhhhhhhhcC-----ChHHHHHHHHHHHHHHHcCCchHHHHHH-HHHHHHHHHHHhhhcCCC------CCCcC
Confidence 35788899999876665 23333333222211 111 111111 156788888888765544 34456
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc-cCCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD-TTAR 254 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~-~~~~ 254 (766)
|+.+++-.+....|. +.+.||+|+|+|..|..++..|...|.. +++++|+. ..| .......|-.. .+..
T Consensus 161 v~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~g~~--~V~v~~r~----~~r---a~~la~~~g~~~~~~~ 230 (311)
T cd05213 161 ISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVA--EITIANRT----YER---AEELAKELGGNAVPLD 230 (311)
T ss_pred HHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHcCCC--EEEEEeCC----HHH---HHHHHHHcCCeEEeHH
Confidence 666666666665555 8899999999999999999999988866 79999873 111 11222222111 1223
Q ss_pred CHHHHhccCcEEEecCCCCCCCHHHHHhhc-c----CcEEEeccCCC
Q psy14495 255 TLSDIIPNADIFLGLSVSGVLKKEMVLQMA-K----NPIILALANPL 296 (766)
Q Consensus 255 ~L~e~i~~~~vliG~S~~g~ft~evv~~M~-~----~PiIfaLsNPt 296 (766)
++.+++..+|++|-++..... +++++.+. . .-+|+=||||-
T Consensus 231 ~~~~~l~~aDvVi~at~~~~~-~~~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 231 ELLELLNEADVVISATGAPHY-AKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred HHHHHHhcCCEEEECCCCCch-HHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 578888889999988763333 56555543 2 23778999985
No 64
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.84 E-value=0.012 Score=58.40 Aligned_cols=118 Identities=21% Similarity=0.235 Sum_probs=81.2
Q ss_pred chhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhc--
Q psy14495 171 HGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFI-- 248 (766)
Q Consensus 171 qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a-- 248 (766)
+||+--++-|++. .++.-|...++|++|-|--|-|||+.|...|.. +.++|.+ |.+.-=|
T Consensus 3 yG~g~S~~d~i~r---~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~---V~V~e~D------------Pi~alqA~~ 64 (162)
T PF00670_consen 3 YGTGQSLVDGIMR---ATNLMLAGKRVVVIGYGKVGKGIARALRGLGAR---VTVTEID------------PIRALQAAM 64 (162)
T ss_dssp HHHHHHHHHHHHH---HH-S--TTSEEEEE--SHHHHHHHHHHHHTT-E---EEEE-SS------------HHHHHHHHH
T ss_pred cccchhHHHHHHh---cCceeeCCCEEEEeCCCcccHHHHHHHhhCCCE---EEEEECC------------hHHHHHhhh
Confidence 5788777777764 688889999999999999999999999999965 7777762 3332222
Q ss_pred cccCCCCHHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEeccCCCCccCHhhHhc
Q psy14495 249 KDTTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALANPLPEILPEDIKS 306 (766)
Q Consensus 249 ~~~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~ 306 (766)
...+..+++|+++.+|+||-+.+ ..+++.|.++.|.+.-|+.-..-=+-|+.-+...+
T Consensus 65 dGf~v~~~~~a~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 65 DGFEVMTLEEALRDADIFVTATGNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp TT-EEE-HHHHTTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred cCcEecCHHHHHhhCCEEEECCCCccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 22334579999999999998887 67899999999999999986665445777765433
No 65
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.75 E-value=0.01 Score=60.83 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHhHh--CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc
Q psy14495 173 TAIIVGSAILNGLKLV--KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD 250 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~--~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~ 250 (766)
||-=+..++-.+++.. +.++++.+++|.|.|..|..+|+.|.+.|.. ++++|++. +.+...+..|..
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~---Vvv~D~~~-------~~~~~~~~~~g~- 73 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAK---LIVADINE-------EAVARAAELFGA- 73 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEcCCH-------HHHHHHHHHcCC-
Confidence 5555566666777775 8899999999999999999999999999975 88888741 123444444321
Q ss_pred cCCCCHHHHhc-cCcEEEecCCCCCCCHHHHHhhccCcEEEeccC-CCCccCHhhHhcccC
Q psy14495 251 TTARTLSDIIP-NADIFLGLSVSGVLKKEMVLQMAKNPIILALAN-PLPEILPEDIKSVRN 309 (766)
Q Consensus 251 ~~~~~L~e~i~-~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsN-Pt~E~~pe~a~~~~~ 309 (766)
..-+..+... .+|+++-++..+.+|++.++.|.- ++|..-+| |+.+...++.++-+|
T Consensus 74 -~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~-~~v~~~AN~~~~~~~~~~~L~~~G 132 (200)
T cd01075 74 -TVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKA-KAIAGAANNQLADPRHGQMLHERG 132 (200)
T ss_pred -EEEcchhhccccCCEEEecccccccCHHHHHHcCC-CEEEECCcCccCCHhHHHHHHHCC
Confidence 1112234443 589999888788999999999964 56666666 665434445554433
No 66
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.75 E-value=0.014 Score=63.16 Aligned_cols=157 Identities=14% Similarity=0.215 Sum_probs=104.0
Q ss_pred cCCCccccCCCC-CCHHHHHHHHHHh--CCCccc--cccccCCCCchHHHHHHHhhcCCCcEEecC--------CchhHH
Q psy14495 109 AGIDVFDLEINE-TDPDKLCDIIFSL--EPTFGG--INLEDIKAPECFYIEKKLRNHMKIPVFHDD--------QHGTAI 175 (766)
Q Consensus 109 ~gi~~l~v~~~~-~~~~~~v~~v~~~--~p~~g~--i~~ED~~~~~af~il~~~~~~~~~~~fnDD--------~qGTa~ 175 (766)
-||++-.+.+.. ..-++|++.++.+ .|+.-+ +|+==-+.-+-.++++...-.-++=.||.. ..+-.-
T Consensus 60 ~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~P 139 (286)
T PRK14175 60 IGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDEQTFVP 139 (286)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcCCCCCCC
Confidence 367766665554 3567888888877 354422 333211111222333332211122233321 123456
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTAR 254 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~ 254 (766)
+|-+|++--++..+.+|+..+++++|+|. .|..+|.+|...|.+ +++++++. .
T Consensus 140 cTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gat---Vtv~~s~t-----------------------~ 193 (286)
T PRK14175 140 CTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNAS---VTILHSRS-----------------------K 193 (286)
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCe---EEEEeCCc-----------------------h
Confidence 78899999999999999999999999988 999999999998866 88888741 2
Q ss_pred CHHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEeccC
Q psy14495 255 TLSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALAN 294 (766)
Q Consensus 255 ~L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLsN 294 (766)
+|.+.++++|++|..-+ ++.+++++++. .-+|+=.+.
T Consensus 194 ~l~~~~~~ADIVIsAvg~p~~i~~~~vk~---gavVIDvGi 231 (286)
T PRK14175 194 DMASYLKDADVIVSAVGKPGLVTKDVVKE---GAVIIDVGN 231 (286)
T ss_pred hHHHHHhhCCEEEECCCCCcccCHHHcCC---CcEEEEcCC
Confidence 48888999999998876 88899988643 445544443
No 67
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.73 E-value=0.0051 Score=69.43 Aligned_cols=168 Identities=20% Similarity=0.305 Sum_probs=110.9
Q ss_pred HHHHhhhcCCCccccCCCCCCHHHHHHHHHHhCC------CccccccccCCCCchHHHHHHHhhcCCCcEEecCCchhHH
Q psy14495 102 AVLFKKFAGIDVFDLEINETDPDKLCDIIFSLEP------TFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAI 175 (766)
Q Consensus 102 ~~ly~~~~gi~~l~v~~~~~~~~~~v~~v~~~~p------~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~qGTa~ 175 (766)
-.||..++|+|.+=+|=+ ++.--||.-|- +.|.+ =++=-..||..=+|.|.+..|+ .|--+
T Consensus 94 ~HLfrVAsGLDSmVlGE~-----QILGQVK~Ay~~a~~~g~~g~~--L~~lFqkAi~~gKrvRseT~I~------~~~VS 160 (414)
T COG0373 94 RHLFRVASGLDSLVLGET-----QILGQVKDAYAKAQENGTLGKV--LNRLFQKAISVGKRVRSETGIG------KGAVS 160 (414)
T ss_pred HHHHHHhccchhhhcCcH-----HHHHHHHHHHHHHHHcCCchHH--HHHHHHHHHHHHHHhhcccCCC------CCccc
Confidence 478999999998777633 22222221111 11100 0111246677778888876554 34555
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc----
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT---- 251 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~---- 251 (766)
|.-|++=-|.+..|. |++.+++|+|||..|-.+|..|.+.|+. +|+++.+ |..| -+.+|++-
T Consensus 161 i~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~g~~--~i~IaNR----T~er-------A~~La~~~~~~~ 226 (414)
T COG0373 161 ISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEKGVK--KITIANR----TLER-------AEELAKKLGAEA 226 (414)
T ss_pred hHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhCCCC--EEEEEcC----CHHH-------HHHHHHHhCCee
Confidence 666666666676665 9999999999999999999999999987 8998887 2222 12334321
Q ss_pred -CCCCHHHHhccCcEEEecCC--CCCCCHHHHHhhcc--Cc-EEEeccCCC
Q psy14495 252 -TARTLSDIIPNADIFLGLSV--SGVLKKEMVLQMAK--NP-IILALANPL 296 (766)
Q Consensus 252 -~~~~L~e~i~~~~vliG~S~--~g~ft~evv~~M~~--~P-iIfaLsNPt 296 (766)
....|.+.+..+||+|-.++ .-.++.++++.-.+ +. +||=++||-
T Consensus 227 ~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 227 VALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred ecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence 23567777888899875543 45888888877653 23 999999995
No 68
>PLN00203 glutamyl-tRNA reductase
Probab=96.71 E-value=0.0064 Score=70.96 Aligned_cols=134 Identities=14% Similarity=0.237 Sum_probs=92.9
Q ss_pred CchHHHHHHHhhcCCCcEEecCCchhHHHHHHHHHHHHhHhCC-cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEE
Q psy14495 148 PECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKK-KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVT 226 (766)
Q Consensus 148 ~~af~il~~~~~~~~~~~fnDD~qGTa~v~lA~ll~al~~~~~-~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~ 226 (766)
..||..=+|-|.+.+|- .|--+|+-+++=-|.+..|. ++.+.+|+|+|||..|-.++..|...|.. ++|++
T Consensus 225 ~~Ai~~~KrVRteT~I~------~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~--~V~V~ 296 (519)
T PLN00203 225 KHAITAGKRVRTETNIA------SGAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCT--KMVVV 296 (519)
T ss_pred HHHHHHHHHHhhccCCC------CCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCC--eEEEE
Confidence 35666666777654431 34445555666666666664 69999999999999999999999998975 89999
Q ss_pred cCCccccCCCCCCCcHHHHHhcc----ccCCCCHHHHhccCcEEEecCC--CCCCCHHHHHhhcc------Cc-EEEecc
Q psy14495 227 DLAGVLYKGRSELMDSNKARFIK----DTTARTLSDIIPNADIFLGLSV--SGVLKKEMVLQMAK------NP-IILALA 293 (766)
Q Consensus 227 D~~Glv~~~r~~~l~~~k~~~a~----~~~~~~L~e~i~~~~vliG~S~--~g~ft~evv~~M~~------~P-iIfaLs 293 (766)
++.. + .....+..|-. -....++.+++..+|++|.+.. ...+++++++.|-+ +| +++=||
T Consensus 297 nRs~----e---ra~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 297 NRSE----E---RVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred eCCH----H---HHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 8742 1 12333333311 0123467888999999998864 55899999999741 34 667799
Q ss_pred CCC
Q psy14495 294 NPL 296 (766)
Q Consensus 294 NPt 296 (766)
.|-
T Consensus 370 vPR 372 (519)
T PLN00203 370 VPR 372 (519)
T ss_pred CCC
Confidence 994
No 69
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.63 E-value=0.0033 Score=56.04 Aligned_cols=92 Identities=17% Similarity=0.256 Sum_probs=64.0
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEE-cCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVT-DLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSGV 274 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~-D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g~ 274 (766)
||.|+|+|..|.++++-|.+.|..+.+++++ +++ ++...+.+..|.......+..|+++.+|++| ++.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~advvi-lav~p~ 72 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-------PEKAAELAKEYGVQATADDNEEAAQEADVVI-LAVKPQ 72 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-------HHHHHHHHHHCTTEEESEEHHHHHHHTSEEE-E-S-GG
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-------HHHHHHHHHhhccccccCChHHhhccCCEEE-EEECHH
Confidence 7899999999999999999999877788865 652 1223444444432222237999999999877 666444
Q ss_pred CCHHHHHhhc---cCcEEEeccCC
Q psy14495 275 LKKEMVLQMA---KNPIILALANP 295 (766)
Q Consensus 275 ft~evv~~M~---~~PiIfaLsNP 295 (766)
.-+++++.+. ++.+|.-++||
T Consensus 73 ~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 73 QLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp GHHHHHHHHHHHHTTSEEEEESTT
T ss_pred HHHHHHHHHhhccCCCEEEEeCCC
Confidence 5557777763 68888888776
No 70
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.56 E-value=0.028 Score=64.37 Aligned_cols=169 Identities=18% Similarity=0.173 Sum_probs=114.5
Q ss_pred HHHHHH-HHHHhCCCccc---cccccCCCC--chHHHHHHHhhcCCC--------cEE----ecCCchhHHHHHHHHHHH
Q psy14495 123 PDKLCD-IIFSLEPTFGG---INLEDIKAP--ECFYIEKKLRNHMKI--------PVF----HDDQHGTAIIVGSAILNG 184 (766)
Q Consensus 123 ~~~~v~-~v~~~~p~~g~---i~~ED~~~~--~af~il~~~~~~~~~--------~~f----nDD~qGTa~v~lA~ll~a 184 (766)
.+.|.. ++.++++.+|. |-=+|++.. .---+.++|+.-.+. |+- .+--..||-=+..++..+
T Consensus 143 ler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~ 222 (445)
T PRK09414 143 IMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEM 222 (445)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHH
Confidence 566665 46777777765 566666532 122356777642111 321 123346777778888888
Q ss_pred HhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEE-cCCccccCCCCCCCcHH-----HHH-------hcccc
Q psy14495 185 LKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVT-DLAGVLYKGRSELMDSN-----KAR-------FIKDT 251 (766)
Q Consensus 185 l~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~-D~~Glv~~~r~~~l~~~-----k~~-------~a~~~ 251 (766)
++..+.++++.||+|.|-|..|...|++|.+.|.+ ++-+ |++|-|+... +|+.. |.. |....
T Consensus 223 ~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~Gak---VVavsDs~G~iyn~~--GLD~~~L~~~k~~~~~~l~~~~~~~ 297 (445)
T PRK09414 223 LKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAK---VVTCSDSSGYVYDEE--GIDLEKLKEIKEVRRGRISEYAEEF 297 (445)
T ss_pred HHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEEcCCceEECCC--CCCHHHHHHHHHhcCCchhhhhhhc
Confidence 88889999999999999999999999999999976 6655 9999999865 44432 211 11100
Q ss_pred --CCCCHHHHhc-cCcEEEecCCCCCCCHHHHHhhc--cCcEEEeccC-CC
Q psy14495 252 --TARTLSDIIP-NADIFLGLSVSGVLKKEMVLQMA--KNPIILALAN-PL 296 (766)
Q Consensus 252 --~~~~L~e~i~-~~~vliG~S~~g~ft~evv~~M~--~~PiIfaLsN-Pt 296 (766)
...+-.+... .+||||-+...+.+|++-...+. +-.+|.=-+| |+
T Consensus 298 ~~~~i~~~~i~~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~ 348 (445)
T PRK09414 298 GAEYLEGGSPWSVPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPS 348 (445)
T ss_pred CCeecCCccccccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCC
Confidence 0112222223 36999999989999999999984 5678887777 76
No 71
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.49 E-value=0.012 Score=66.09 Aligned_cols=94 Identities=18% Similarity=0.321 Sum_probs=69.8
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc-----cCCCCHHHHhccCcEE
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD-----TTARTLSDIIPNADIF 266 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~-----~~~~~L~e~i~~~~vl 266 (766)
+...+++|+|+|.+|.++++.+...|.. ++++|++ .. .+......|... .+...|.+.++++|++
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~---V~v~d~~----~~---~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvV 234 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGAT---VTILDIN----ID---RLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLL 234 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCe---EEEEECC----HH---HHHHHHHhcCceeEeccCCHHHHHHHHccCCEE
Confidence 5678899999999999999999999974 9999973 11 122222233221 1224688899999999
Q ss_pred EecC------CCCCCCHHHHHhhccCcEEEeccCC
Q psy14495 267 LGLS------VSGVLKKEMVLQMAKNPIILALANP 295 (766)
Q Consensus 267 iG~S------~~g~ft~evv~~M~~~PiIfaLsNP 295 (766)
|.+. .+..+|+++++.|.++.+|+-+|-.
T Consensus 235 I~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred EEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 9874 1456899999999999999988843
No 72
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.43 E-value=0.015 Score=62.79 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=84.0
Q ss_pred cCCCccccCCCCCCHHHHHHHHHHhCCCcccc-----------ccccCCCCchHHHHH--H-Hh-hcCCCcEEecCCchh
Q psy14495 109 AGIDVFDLEINETDPDKLCDIIFSLEPTFGGI-----------NLEDIKAPECFYIEK--K-LR-NHMKIPVFHDDQHGT 173 (766)
Q Consensus 109 ~gi~~l~v~~~~~~~~~~v~~v~~~~p~~g~i-----------~~ED~~~~~af~il~--~-~~-~~~~~~~fnDD~qGT 173 (766)
-|+|..=+..+..++++|-++++.+.++|++. .+=|--++.|..+=- - ++ +.-.+.=||-|-
T Consensus 31 ~gl~~~y~~~~~~~~~~l~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~iGAVNTv~~~~~g~l~G~NTD~--- 107 (282)
T TIGR01809 31 LGLPDKTYEFETCSAEELKEVLSGFGPQFGGASVTIPLKFAILRFADEHTDRASLIGSVNTLLRTQNGIWKGDNTDW--- 107 (282)
T ss_pred cCCCcEEEeeecCCHHHHHHHHHhcCCCCcEEEECCCCHHHHHHHhhcCCHHHHHhCceeEEEEcCCCcEEEecCCH---
Confidence 36773222223334567777777666677664 222322222221100 0 01 111233456665
Q ss_pred HHHHHHHHHHHHhHhCC--cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc
Q psy14495 174 AIIVGSAILNGLKLVKK--KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT 251 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~--~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~ 251 (766)
.|++.+++..+. ++++.+++++|||.||-+++..|.+.|++ +|+++++. .+|.+.|- ..|....
T Consensus 108 -----~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~--~i~I~nRt----~~ka~~La---~~~~~~~ 173 (282)
T TIGR01809 108 -----DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVT--DITVINRN----PDKLSRLV---DLGVQVG 173 (282)
T ss_pred -----HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCC--eEEEEeCC----HHHHHHHH---HHhhhcC
Confidence 456777776663 68899999999999999999999999988 89999873 22211121 1121111
Q ss_pred ---CC---CCHHHHhccCcEEEecCCCC
Q psy14495 252 ---TA---RTLSDIIPNADIFLGLSVSG 273 (766)
Q Consensus 252 ---~~---~~L~e~i~~~~vliG~S~~g 273 (766)
.. .++.+.+..+|++|.++..|
T Consensus 174 ~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 174 VITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cceeccchhhhhhcccCCCEEEECCCCC
Confidence 01 23445567789999887533
No 73
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.17 E-value=0.0077 Score=65.16 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=60.9
Q ss_pred HHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCc-HHHHHhc--cccCCCC
Q psy14495 179 SAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMD-SNKARFI--KDTTART 255 (766)
Q Consensus 179 A~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~-~~k~~~a--~~~~~~~ 255 (766)
.|++.+|+..+.+++..+++|+|||.+|-+++..|.+.|++ +|+++|+. ..|.+.+. ..+..+. .-....+
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~--~I~I~nR~----~~ka~~la~~l~~~~~~~~~~~~~~ 185 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVE--RLTIFDVD----PARAAALADELNARFPAARATAGSD 185 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCC--EEEEECCC----HHHHHHHHHHHHhhCCCeEEEeccc
Confidence 45677777655678889999999999999999999999987 79999984 22211121 1111111 1112345
Q ss_pred HHHHhccCcEEEecCCCC
Q psy14495 256 LSDIIPNADIFLGLSVSG 273 (766)
Q Consensus 256 L~e~i~~~~vliG~S~~g 273 (766)
+.+.++.+|++|.++..|
T Consensus 186 ~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 186 LAAALAAADGLVHATPTG 203 (284)
T ss_pred hHhhhCCCCEEEECCcCC
Confidence 667788899999887544
No 74
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.16 E-value=0.076 Score=60.80 Aligned_cols=120 Identities=19% Similarity=0.220 Sum_probs=85.0
Q ss_pred HHHHHH-HHHHhCCCccc---cccccCCCC--chHHHHHHHhhcCCC-c-EE----------ecCCchhHHHHHHHHHHH
Q psy14495 123 PDKLCD-IIFSLEPTFGG---INLEDIKAP--ECFYIEKKLRNHMKI-P-VF----------HDDQHGTAIIVGSAILNG 184 (766)
Q Consensus 123 ~~~~v~-~v~~~~p~~g~---i~~ED~~~~--~af~il~~~~~~~~~-~-~f----------nDD~qGTa~v~lA~ll~a 184 (766)
.+.|.. ++..+.+..|. |--+|++.. .=--+.+.|+...+. | ++ .+--.-||-=+.-++-.+
T Consensus 139 ler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~ 218 (444)
T PRK14031 139 VMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEM 218 (444)
T ss_pred HHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHH
Confidence 455554 57777777664 666666542 223356677542111 1 22 233456777778888889
Q ss_pred HhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHH
Q psy14495 185 LKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKAR 246 (766)
Q Consensus 185 l~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~ 246 (766)
++..|.+|+++||+|.|.|..|...|+.|.+.|.. =+.+-|++|-|+... +++..+..
T Consensus 219 ~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAk--VVaVSD~~G~iy~~~--Gld~~~l~ 276 (444)
T PRK14031 219 LKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGK--VVTMSDSDGYIYDPD--GIDREKLD 276 (444)
T ss_pred HHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCCeEECCC--CCCHHHHH
Confidence 99999999999999999999999999999999987 355699999998754 57665544
No 75
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.09 E-value=0.026 Score=57.17 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEECc-chhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc--
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGA-GAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK-- 249 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~Ga-G~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~-- 249 (766)
||+.+.+.+..+++..|.++++.+++++|+ |..|-.++..|.+.|. ++++++++. + ........+..
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~---~V~l~~R~~----~---~~~~l~~~l~~~~ 76 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGA---RVVLVGRDL----E---RAQKAADSLRARF 76 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCH----H---HHHHHHHHHHhhc
Confidence 778888888888888899999999999997 9999999999998873 588887641 1 12222222210
Q ss_pred --------ccCCCCHHHHhccCcEEEecCCCCCCCHHHHHhhccC--cEEEeccCCC
Q psy14495 250 --------DTTARTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKN--PIILALANPL 296 (766)
Q Consensus 250 --------~~~~~~L~e~i~~~~vliG~S~~g~ft~evv~~M~~~--PiIfaLsNPt 296 (766)
..+..++.++++++|++|-++..|..+...... ..+ .+++=++.|-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~-~~~~~~vv~D~~~~~ 132 (194)
T cd01078 77 GEGVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAW-APKPLAVAADVNAVP 132 (194)
T ss_pred CCcEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechhhhc-ccCceeEEEEccCCC
Confidence 012235678888899999876655543333222 223 3677666664
No 76
>PLN02928 oxidoreductase family protein
Probab=96.02 E-value=0.08 Score=58.97 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=88.4
Q ss_pred CCcEEecC------CchhHHHHHHHHHHHHhH----------------hCCcCCCceEEEECcchhhHHHHHHHHHcCCC
Q psy14495 162 KIPVFHDD------QHGTAIIVGSAILNGLKL----------------VKKKMKDCKLVVSGAGAAALACLDLIIDLGFP 219 (766)
Q Consensus 162 ~~~~fnDD------~qGTa~v~lA~ll~al~~----------------~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~ 219 (766)
+|++.|-- -+.+|--+++.+|+.+|. .+..|.+.++.|+|.|..|..+|+.+...|+.
T Consensus 105 gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~ 184 (347)
T PLN02928 105 GIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVK 184 (347)
T ss_pred CCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhCCCE
Confidence 57777731 245666777777777764 24579999999999999999999999999986
Q ss_pred CccEEEEcCCccccCCCCCCC--c--HHHHHhccccCCCCHHHHhccCcEEEecC-----CCCCCCHHHHHhhccCcEEE
Q psy14495 220 LQNIFVTDLAGVLYKGRSELM--D--SNKARFIKDTTARTLSDIIPNADIFLGLS-----VSGVLKKEMVLQMAKNPIIL 290 (766)
Q Consensus 220 ~~~i~~~D~~Glv~~~r~~~l--~--~~k~~~a~~~~~~~L~e~i~~~~vliG~S-----~~g~ft~evv~~M~~~PiIf 290 (766)
++.+|+.. .......+ + ..+..........+|.|+++.+|+++-.- +.+.|+++.+..|.+..++.
T Consensus 185 ---V~~~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lI 259 (347)
T PLN02928 185 ---LLATRRSW--TSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLV 259 (347)
T ss_pred ---EEEECCCC--ChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEE
Confidence 88888742 00000000 0 00000000113458999999999887542 25799999999999999888
Q ss_pred eccCC
Q psy14495 291 ALANP 295 (766)
Q Consensus 291 aLsNP 295 (766)
-.|.-
T Consensus 260 NvaRG 264 (347)
T PLN02928 260 NIARG 264 (347)
T ss_pred ECCCc
Confidence 77753
No 77
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.02 E-value=0.019 Score=62.21 Aligned_cols=57 Identities=26% Similarity=0.223 Sum_probs=47.5
Q ss_pred CcEEecCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 163 IPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 163 ~~~fnDD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.-=||.| ..|++.+|+..+..+++.+++|+|||-+|-+|+..|.+.|.+ +|+++|+.
T Consensus 103 l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~--~V~I~~R~ 159 (289)
T PRK12548 103 LTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCALDGAK--EITIFNIK 159 (289)
T ss_pred EEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCC--EEEEEeCC
Confidence 4467777 345777888777788899999999999999999999999987 79999873
No 78
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.99 E-value=0.044 Score=60.79 Aligned_cols=111 Identities=16% Similarity=0.241 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEECc-chhhHHHHHHHHH-cCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGA-GAAALACLDLIID-LGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD 250 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~Ga-G~ag~gia~~l~~-~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~ 250 (766)
|+++...++--+.+..|.++++.+++|.|| |+.|-.++++|.+ .|.. ++++++++ .. .+...+.++..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~--~lilv~R~----~~---rl~~La~el~~- 203 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVA--ELLLVARQ----QE---RLQELQAELGG- 203 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCC--EEEEEcCC----HH---HHHHHHHHhcc-
Confidence 677888888889999999999999999999 8999999999985 4655 79988874 11 23343444432
Q ss_pred cCCCCHHHHhccCcEEEecCC--CC-CCCHHHHHhhccCcEEEeccCCC
Q psy14495 251 TTARTLSDIIPNADIFLGLSV--SG-VLKKEMVLQMAKNPIILALANPL 296 (766)
Q Consensus 251 ~~~~~L~e~i~~~~vliG~S~--~g-~ft~evv~~M~~~PiIfaLsNPt 296 (766)
.+..++.+++.++|+++=+.+ .. .++++.+ .+.-+++=++.|-
T Consensus 204 ~~i~~l~~~l~~aDiVv~~ts~~~~~~I~~~~l---~~~~~viDiAvPR 249 (340)
T PRK14982 204 GKILSLEEALPEADIVVWVASMPKGVEIDPETL---KKPCLMIDGGYPK 249 (340)
T ss_pred ccHHhHHHHHccCCEEEECCcCCcCCcCCHHHh---CCCeEEEEecCCC
Confidence 223468899999999886654 33 3787766 2445666789985
No 79
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.95 E-value=0.071 Score=57.64 Aligned_cols=148 Identities=20% Similarity=0.210 Sum_probs=99.6
Q ss_pred cCCCccccCCCCC-CHHHHHHHHHHhC--CCccc--cccccCCCCchHHHHHHHhhcCCCcEEecCCch--------hHH
Q psy14495 109 AGIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INLEDIKAPECFYIEKKLRNHMKIPVFHDDQHG--------TAI 175 (766)
Q Consensus 109 ~gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~ED~~~~~af~il~~~~~~~~~~~fnDD~qG--------Ta~ 175 (766)
-||++-.+.+..+ .-++|++.++.+- |+.-+ +|+==-+.-+..++++.....-++=.||..-.| -.-
T Consensus 59 ~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~P 138 (285)
T PRK14191 59 VGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQLDGFVP 138 (285)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCC
Confidence 3577655555543 4678888888774 44322 333211111233333332211123344433322 234
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTAR 254 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~ 254 (766)
+|-.|++.=|+..+.+++..++|++|.| ..|.-+|.+|.+.|.+ +++|+++- .
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAt---Vtv~hs~t-----------------------~ 192 (285)
T PRK14191 139 ATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGAS---VSVCHILT-----------------------K 192 (285)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCE---EEEEeCCc-----------------------H
Confidence 6888999999999999999999999999 9999999999998876 78886631 1
Q ss_pred CHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 255 TLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 255 ~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
+|.+.++++|++|...+ ++.++++|++.
T Consensus 193 ~l~~~~~~ADIvV~AvG~p~~i~~~~vk~ 221 (285)
T PRK14191 193 DLSFYTQNADIVCVGVGKPDLIKASMVKK 221 (285)
T ss_pred HHHHHHHhCCEEEEecCCCCcCCHHHcCC
Confidence 27788999999999887 89999999854
No 80
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.93 E-value=0.034 Score=58.90 Aligned_cols=125 Identities=19% Similarity=0.295 Sum_probs=89.8
Q ss_pred cCCchhHHHHHHHHHHHHhHhCCc-CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHH--H
Q psy14495 168 DDQHGTAIIVGSAILNGLKLVKKK-MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSN--K 244 (766)
Q Consensus 168 DD~qGTa~v~lA~ll~al~~~~~~-l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~--k 244 (766)
|--+-||-=+..++-.+++..+.+ ++..|++|-|.|..|...|+.|.+.|.. =+-+-|++|.|+... .++.. .
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~--vv~vsD~~G~i~~~~--Gld~~~l~ 80 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAK--VVAVSDSSGAIYDPD--GLDVEELL 80 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEE--EEEEEESSEEEEETT--EEHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCE--EEEEecCceEEEcCC--CchHHHHH
Confidence 344568888888889999997776 9999999999999999999999999966 366779999998644 33221 1
Q ss_pred HHhccccC-CCCHH--------------HHhc-cCcEEEecCCCCCCCHHHHH-hhc-cCcEEEeccC-CC
Q psy14495 245 ARFIKDTT-ARTLS--------------DIIP-NADIFLGLSVSGVLKKEMVL-QMA-KNPIILALAN-PL 296 (766)
Q Consensus 245 ~~~a~~~~-~~~L~--------------e~i~-~~~vliG~S~~g~ft~evv~-~M~-~~PiIfaLsN-Pt 296 (766)
....+... ...+. +.+. .+|||+-+..++.+|++.+. ... .-++|.--+| |+
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~ 151 (244)
T PF00208_consen 81 RIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPL 151 (244)
T ss_dssp HHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSB
T ss_pred HHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhc
Confidence 11111111 11111 3443 46999999889999999999 664 4788888888 54
No 81
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.93 E-value=0.023 Score=64.70 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=102.7
Q ss_pred HHHHhhhcCCCccccCCCCCCHHHHHHHHHHhC------CCccccccccCCCCchHHHHHHHhhcCCCcEEecCCchhHH
Q psy14495 102 AVLFKKFAGIDVFDLEINETDPDKLCDIIFSLE------PTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAI 175 (766)
Q Consensus 102 ~~ly~~~~gi~~l~v~~~~~~~~~~v~~v~~~~------p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~qGTa~ 175 (766)
-.||..++|+|.+=+| -++++--||.-| -+.|.+ ++ .=-..||..=+|-|.+.+|- +|.-+
T Consensus 97 ~HLfrVasGLdSmVlG-----E~QIlgQVK~A~~~A~~~g~~g~~-L~-~lf~~A~~~aKrVrteT~I~------~~~vS 163 (414)
T PRK13940 97 MHLMKLACGLESMVLG-----EPQILGQVKDSYTLSKKNHAIGKE-LD-RVFQKVFATAKRVRSETRIG------HCPVS 163 (414)
T ss_pred HHHHHHHhccchhhcC-----cHHHHHHHHHHHHHHHHcCCchHH-HH-HHHHHHHHHHHHHHhccCCC------CCCcC
Confidence 4778888888866565 334443332221 111110 00 00135677777777765432 22334
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhc--cccCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFI--KDTTA 253 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a--~~~~~ 253 (766)
|+-+|+=-|.+.. .++++.|++|+|||.+|-.++..|.+.|+. +|+++++. .+| .......|. .....
T Consensus 164 v~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~~g~~--~I~V~nRt----~~r---a~~La~~~~~~~~~~~ 233 (414)
T PRK13940 164 VAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTALAPK--QIMLANRT----IEK---AQKITSAFRNASAHYL 233 (414)
T ss_pred HHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHHcCCC--EEEEECCC----HHH---HHHHHHHhcCCeEecH
Confidence 4444444444443 358899999999999999999999999987 89998883 222 122222231 11123
Q ss_pred CCHHHHhccCcEEEecCC--CCCCCHHHHHhhccCcE-EEeccCCC
Q psy14495 254 RTLSDIIPNADIFLGLSV--SGVLKKEMVLQMAKNPI-ILALANPL 296 (766)
Q Consensus 254 ~~L~e~i~~~~vliG~S~--~g~ft~evv~~M~~~Pi-IfaLsNPt 296 (766)
.+|.+.+..+|++|-+++ .-++|.+.++ .+|. ++=||+|-
T Consensus 234 ~~l~~~l~~aDiVI~aT~a~~~vi~~~~~~---~~~~~~iDLavPR 276 (414)
T PRK13940 234 SELPQLIKKADIIIAAVNVLEYIVTCKYVG---DKPRVFIDISIPQ 276 (414)
T ss_pred HHHHHHhccCCEEEECcCCCCeeECHHHhC---CCCeEEEEeCCCC
Confidence 567888899999998875 3478877754 4564 57799995
No 82
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.91 E-value=0.076 Score=61.87 Aligned_cols=99 Identities=23% Similarity=0.328 Sum_probs=64.3
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCC-------CcH-----HHHHhccccC-------
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSEL-------MDS-----NKARFIKDTT------- 252 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~-------l~~-----~k~~~a~~~~------- 252 (766)
....|++|+|+|.+|+..+..+...|.. ++++|.+.-.-+ +-+. ++. ...-||+...
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~---V~v~d~~~~rle-~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAI---VRAFDTRPEVKE-QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCHHHHH-HHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 4568999999999999999999999964 778887542100 0000 000 0011222110
Q ss_pred CCCHHHHhccCcEEEecCC-CC-----CCCHHHHHhhccCcEEEeccC
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SG-----VLKKEMVLQMAKNPIILALAN 294 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g-----~ft~evv~~M~~~PiIfaLsN 294 (766)
..-+.+.++.+|++|++.- +| ++|+++++.|.+.-.|.=||-
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 0125667788999999872 33 599999999998777776664
No 83
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.84 E-value=0.035 Score=55.72 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=72.4
Q ss_pred HHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhcc
Q psy14495 183 NGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPN 262 (766)
Q Consensus 183 ~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~ 262 (766)
......+..+.+++|.|+|.|..|..+|+++...|++ ++.+|+..- +............+|.|.++.
T Consensus 25 ~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~---V~~~d~~~~----------~~~~~~~~~~~~~~l~ell~~ 91 (178)
T PF02826_consen 25 SRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMR---VIGYDRSPK----------PEEGADEFGVEYVSLDELLAQ 91 (178)
T ss_dssp HHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-E---EEEEESSCH----------HHHHHHHTTEEESSHHHHHHH
T ss_pred CCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCce---eEEecccCC----------hhhhcccccceeeehhhhcch
Confidence 3456678899999999999999999999999999986 888888431 111011111234589999999
Q ss_pred CcEEEec-C----CCCCCCHHHHHhhccCcEEEeccCC
Q psy14495 263 ADIFLGL-S----VSGVLKKEMVLQMAKNPIILALANP 295 (766)
Q Consensus 263 ~~vliG~-S----~~g~ft~evv~~M~~~PiIfaLsNP 295 (766)
+|+++=. . +.+.|+++.++.|.+..++.-.|.-
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSG
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccch
Confidence 9987633 2 2589999999999999888877653
No 84
>PRK07574 formate dehydrogenase; Provisional
Probab=95.50 E-value=0.15 Score=57.56 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=96.8
Q ss_pred CCCccccccccCCCCchHHHHHHHhhcCCCcEEecCCc---hhHHHHHHHHHHHHhHh--------------------CC
Q psy14495 134 EPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQH---GTAIIVGSAILNGLKLV--------------------KK 190 (766)
Q Consensus 134 ~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~q---GTa~v~lA~ll~al~~~--------------------~~ 190 (766)
.|+.-.|+.-=.+..|- . ++..++ .+|++.|-.-- .+|=-+++-+|+.+|-. +.
T Consensus 112 ~p~LK~I~~~g~G~D~i-d-~~aa~~-~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 188 (385)
T PRK07574 112 APNLKLAITAGIGSDHV-D-LQAASE-HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSY 188 (385)
T ss_pred CCCCcEEEECCcccccc-c-HHHHHH-CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccce
Confidence 45655555544444431 1 223333 37899985332 23444788888776631 34
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEec-
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGL- 269 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~- 269 (766)
.|.+++|.|+|.|..|..+|+.|...|+. ++.+|+...- .+....+ .-+...+|.|+++.+|+++=.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~---V~~~dr~~~~--------~~~~~~~-g~~~~~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVK---LHYTDRHRLP--------EEVEQEL-GLTYHVSFDSLVSVCDVVTIHC 256 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCE---EEEECCCCCc--------hhhHhhc-CceecCCHHHHhhcCCEEEEcC
Confidence 58899999999999999999999999986 8888874310 0111111 011135799999999987532
Q ss_pred C----CCCCCCHHHHHhhccCcEEEeccC
Q psy14495 270 S----VSGVLKKEMVLQMAKNPIILALAN 294 (766)
Q Consensus 270 S----~~g~ft~evv~~M~~~PiIfaLsN 294 (766)
. +.+.|+++++..|.+..++.-.|.
T Consensus 257 Plt~~T~~li~~~~l~~mk~ga~lIN~aR 285 (385)
T PRK07574 257 PLHPETEHLFDADVLSRMKRGSYLVNTAR 285 (385)
T ss_pred CCCHHHHHHhCHHHHhcCCCCcEEEECCC
Confidence 2 147899999999999999887775
No 85
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.47 E-value=0.071 Score=54.47 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=71.6
Q ss_pred HHHHHHHHHhHh---------CCcCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHH
Q psy14495 177 VGSAILNGLKLV---------KKKMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKAR 246 (766)
Q Consensus 177 ~lA~ll~al~~~---------~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~ 246 (766)
|-.|++-=|+.. |.+++.++++|+|-+. .|.-+|.||.+.|.+ +++||++|.....+...+.+.+.
T Consensus 36 Tp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~At---Vti~~~~~~~~~~~~~~~~hs~t- 111 (197)
T cd01079 36 TPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGAR---VYSVDINGIQVFTRGESIRHEKH- 111 (197)
T ss_pred CHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCE---EEEEecCcccccccccccccccc-
Confidence 455555555555 4489999999999764 678889999998877 99999999887665332322110
Q ss_pred hccccC-CCCHHHHhccCcEEEecCC-CCC-CCHHHHHh
Q psy14495 247 FIKDTT-ARTLSDIIPNADIFLGLSV-SGV-LKKEMVLQ 282 (766)
Q Consensus 247 ~a~~~~-~~~L~e~i~~~~vliG~S~-~g~-ft~evv~~ 282 (766)
+..+ ..+|.|.++.+|++|-.-+ ++. ++.||++.
T Consensus 112 --~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~ 148 (197)
T cd01079 112 --HVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKD 148 (197)
T ss_pred --cccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCC
Confidence 0011 1248899999999997766 787 89999875
No 86
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.45 E-value=0.014 Score=58.05 Aligned_cols=92 Identities=25% Similarity=0.392 Sum_probs=58.3
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHH-----------------hccc----
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKAR-----------------FIKD---- 250 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~-----------------~a~~---- 250 (766)
+...+|||.|+|.+|.|.++++..+|.. +...|..= ..+...+.. |.+.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~---v~~~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAE---VVVPDERP-------ERLRQLESLGAYFIEVDYEDHLERKDFDKADYYE 87 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-E---EEEEESSH-------HHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCE---EEeccCCH-------HHHHhhhcccCceEEEcccccccccccchhhhhH
Confidence 5678999999999999999999999986 55555420 001111111 2221
Q ss_pred -c--CCCCHHHHhccCcEEEecC-C-----CCCCCHHHHHhhccCcEEEecc
Q psy14495 251 -T--TARTLSDIIPNADIFLGLS-V-----SGVLKKEMVLQMAKNPIILALA 293 (766)
Q Consensus 251 -~--~~~~L~e~i~~~~vliG~S-~-----~g~ft~evv~~M~~~PiIfaLs 293 (766)
. ....|.+.++.+|++|+.. . |-++|+++++.|.+--+|-=+|
T Consensus 88 ~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 88 HPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 0 1235888888899999642 1 5589999999999766666555
No 87
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.44 E-value=0.059 Score=59.62 Aligned_cols=161 Identities=13% Similarity=0.051 Sum_probs=97.2
Q ss_pred hHHHHhhhcCCCccccCCCCCCHHHHHHHHHHhCC------Cccc-cccccCCCCchHHHHHHHhhcCCCcEEecCCchh
Q psy14495 101 KAVLFKKFAGIDVFDLEINETDPDKLCDIIFSLEP------TFGG-INLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGT 173 (766)
Q Consensus 101 K~~ly~~~~gi~~l~v~~~~~~~~~~v~~v~~~~p------~~g~-i~~ED~~~~~af~il~~~~~~~~~~~fnDD~qGT 173 (766)
=-.||..++|+|.+=+| .++++--||.-+- +.|. +| .=-..||..=+|-|.+.+| |+
T Consensus 90 v~HLfrVasGLDSmVlG-----E~QIlGQVK~Ay~~A~~~g~~g~~L~---~lf~~A~~~aKrVRteT~I--------~~ 153 (338)
T PRK00676 90 FTHLFCVTSGMDSLILG-----ETEIQGQVKRAYLKAARERKLPFALH---FLFQKALKEGKVFRSKGGA--------PY 153 (338)
T ss_pred HHHHHHHhcccchhhcC-----cHHHHHHHHHHHHHHHHcCCchHHHH---HHHHHHHHHHHHHhhhcCC--------CC
Confidence 45899999999976665 3334332222111 1111 11 1124567777777876443 23
Q ss_pred HHHHHH--HHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc
Q psy14495 174 AIIVGS--AILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT 251 (766)
Q Consensus 174 a~v~lA--~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~ 251 (766)
+.|.++ ++..+ +.. .++++.|++++|||..|--+++.|.+.|++ +|+++.+.-- + .+|....
T Consensus 154 ~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~--~i~v~nRt~~----~--------~~~~~~~ 217 (338)
T PRK00676 154 AEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYS--RITFCSRQQL----T--------LPYRTVV 217 (338)
T ss_pred CCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCC--EEEEEcCCcc----c--------cchhhhh
Confidence 333333 33333 333 569999999999999999999999999987 8999988641 1 1121100
Q ss_pred CCCCHHHHhccCcEEEecC----C-CCCCCHHHHHhhccCcEEEeccCCC
Q psy14495 252 TARTLSDIIPNADIFLGLS----V-SGVLKKEMVLQMAKNPIILALANPL 296 (766)
Q Consensus 252 ~~~~L~e~i~~~~vliG~S----~-~g~ft~evv~~M~~~PiIfaLsNPt 296 (766)
....+....+||+|-+| + .-.++.+.++...+| ++|=||+|.
T Consensus 218 --~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r-~~iDLAvPR 264 (338)
T PRK00676 218 --REELSFQDPYDVIFFGSSESAYAFPHLSWESLADIPDR-IVFDFNVPR 264 (338)
T ss_pred --hhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhccCc-EEEEecCCC
Confidence 00112234579999642 2 346788887763344 999999996
No 88
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.31 E-value=0.056 Score=58.41 Aligned_cols=145 Identities=19% Similarity=0.186 Sum_probs=97.7
Q ss_pred cCCCccccCCCC-CCHHHHHHHHHHhC--CCc-cc-ccc---ccCCCCchHHHHHHHhhcCCCcEEecC--------Cch
Q psy14495 109 AGIDVFDLEINE-TDPDKLCDIIFSLE--PTF-GG-INL---EDIKAPECFYIEKKLRNHMKIPVFHDD--------QHG 172 (766)
Q Consensus 109 ~gi~~l~v~~~~-~~~~~~v~~v~~~~--p~~-g~-i~~---ED~~~~~af~il~~~~~~~~~~~fnDD--------~qG 172 (766)
-||++-.+.+.. ...+||.+.+..+- |+. |. +|+ +.+... ++++...-.-++=.||.. ..+
T Consensus 61 ~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~---~i~~~I~p~KDVDGl~~~n~g~l~~~~~~ 137 (285)
T PRK10792 61 VGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNV---KVLERIHPDKDVDGFHPYNVGRLAQRIPL 137 (285)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH---HHHhccCcccccCccChhhHhHHhCCCCC
Confidence 357766666654 35677888777763 433 22 232 222222 222222111112233321 122
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT 251 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~ 251 (766)
-.-+|-+|++..|+..+.+++..+++++|-|. .|.-+|.||...|.+ +++|+|+
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~at---Vtv~hs~---------------------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCT---VTVCHRF---------------------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCe---EEEEECC----------------------
Confidence 34568899999999999999999999999998 999999999998876 8888874
Q ss_pred CCCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 252 TARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 252 ~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
.++|.+.++++|++|-+-+ ++.++.++++.
T Consensus 193 -T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~ 223 (285)
T PRK10792 193 -TKNLRHHVRNADLLVVAVGKPGFIPGEWIKP 223 (285)
T ss_pred -CCCHHHHHhhCCEEEEcCCCcccccHHHcCC
Confidence 1248888999999998876 88999888764
No 89
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.25 E-value=0.1 Score=50.72 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTAR 254 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~ 254 (766)
.+..|++.-++..|.+++.++++++|.+. .|--++.+|.+.|.+ +.++|++. .
T Consensus 10 ~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gat---V~~~~~~t-----------------------~ 63 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGAT---VYSCDWKT-----------------------I 63 (140)
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCE---EEEeCCCC-----------------------c
Confidence 47889999999999999999999999865 567779999988876 88888742 1
Q ss_pred CHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 255 TLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 255 ~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
+|.+.++++|++|-..+ ++.|+.|+++.
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~i~~~~ikp 92 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEKVPTEWIKP 92 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCccCHHHcCC
Confidence 48889999999997776 78899999775
No 90
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.17 E-value=0.15 Score=57.57 Aligned_cols=118 Identities=15% Similarity=0.176 Sum_probs=90.0
Q ss_pred CCCcEEecCC---chhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCC
Q psy14495 161 MKIPVFHDDQ---HGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRS 237 (766)
Q Consensus 161 ~~~~~fnDD~---qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~ 237 (766)
.+|++.|--- +..|=-+++.+++..|..|..+.+.++.|+|.|..|..+|+.+...|+. ++.+|...- ..
T Consensus 80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~---V~~~Dp~~~---~~- 152 (381)
T PRK00257 80 AGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWK---VLVCDPPRQ---EA- 152 (381)
T ss_pred CCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCE---EEEECCccc---cc-
Confidence 3688888533 2344457999999999999999999999999999999999999999987 888886310 00
Q ss_pred CCCcHHHHHhccccCCCCHHHHhccCcEEE-ecC--------CCCCCCHHHHHhhccCcEEEeccCC
Q psy14495 238 ELMDSNKARFIKDTTARTLSDIIPNADIFL-GLS--------VSGVLKKEMVLQMAKNPIILALANP 295 (766)
Q Consensus 238 ~~l~~~k~~~a~~~~~~~L~e~i~~~~vli-G~S--------~~g~ft~evv~~M~~~PiIfaLsNP 295 (766)
+ ......+|.|+++.+|++. -+. +.+.|+++.+..|.+..++.-.|.-
T Consensus 153 ~----------~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (381)
T PRK00257 153 E----------GDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRG 209 (381)
T ss_pred c----------cCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCC
Confidence 0 0012347999999998764 121 2479999999999999999877753
No 91
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.11 E-value=0.2 Score=54.29 Aligned_cols=144 Identities=16% Similarity=0.217 Sum_probs=99.9
Q ss_pred CCCccccCCCCC-CHHHHHHHHHHhC--CCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecCCc--------hh
Q psy14495 110 GIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDDQH--------GT 173 (766)
Q Consensus 110 gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD~q--------GT 173 (766)
||++-.+.+..+ .-++|.+.++.+- |+.-+ +|+ +.+... ++++...-.-++=.||..-. +-
T Consensus 67 Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~---~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~ 143 (287)
T PRK14176 67 GIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQ---EAMEAIDPAKDADGFHPYNMGKLMIGDEGL 143 (287)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHH---HHHhccCccccccccChhhhhhHhcCCCCC
Confidence 577555555433 5677888887773 44322 333 233333 33333322113335554332 23
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT 252 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~ 252 (766)
.-+|-.|++..|+..+.+++..++|++|-|. -|--+|.+|...|.+ +++|+++-
T Consensus 144 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~at---Vtv~hs~T---------------------- 198 (287)
T PRK14176 144 VPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNAT---VSVCHVFT---------------------- 198 (287)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCE---EEEEeccC----------------------
Confidence 4668899999999999999999999999998 999999999998876 88888631
Q ss_pred CCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-+.+ |+.++++|++.
T Consensus 199 -~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~ 228 (287)
T PRK14176 199 -DDLKKYTLDADILVVATGVKHLIKADMVKE 228 (287)
T ss_pred -CCHHHHHhhCCEEEEccCCccccCHHHcCC
Confidence 137888899999997776 89999988764
No 92
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.89 E-value=0.13 Score=60.12 Aligned_cols=100 Identities=24% Similarity=0.325 Sum_probs=66.9
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC----------ccc---cCCCCCCCcHHHHHhccccCC-----
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA----------GVL---YKGRSELMDSNKARFIKDTTA----- 253 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~----------Glv---~~~r~~~l~~~k~~~a~~~~~----- 253 (766)
....||+|+|+|.+|++.+..++..|. +++.+|.. |.- ...+++ ......|++....
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA---~V~a~D~~~~rle~aeslGA~~v~i~~~e~--~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVAEQVESMGAEFLELDFEEE--GGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeEEEeccccc--cccccchhhhcchhHHHH
Confidence 457899999999999999999999996 38888874 110 000000 0111223332110
Q ss_pred --CCHHHHhccCcEEEecCC-CC-----CCCHHHHHhhccCcEEEeccCCC
Q psy14495 254 --RTLSDIIPNADIFLGLSV-SG-----VLKKEMVLQMAKNPIILALANPL 296 (766)
Q Consensus 254 --~~L~e~i~~~~vliG~S~-~g-----~ft~evv~~M~~~PiIfaLsNPt 296 (766)
..+.+.++++|++|.++. +| ++++++++.|.+.-.|.-++.|.
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~ 288 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAEN 288 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCC
Confidence 123444567899999986 55 66999999999988888888753
No 93
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.89 E-value=0.088 Score=56.97 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=95.1
Q ss_pred CCCccccCCCCC-CHHHHHHHHHHhC--CCc-cc-ccc---ccCCCCchHHHHHHHhhcCCCcEEecCCc--------hh
Q psy14495 110 GIDVFDLEINET-DPDKLCDIIFSLE--PTF-GG-INL---EDIKAPECFYIEKKLRNHMKIPVFHDDQH--------GT 173 (766)
Q Consensus 110 gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~-g~-i~~---ED~~~~~af~il~~~~~~~~~~~fnDD~q--------GT 173 (766)
||++-.+.+..+ ..++|.+.+..+- |+. |. +|+ +.+.. .++++...-.-++=.||..-+ +-
T Consensus 61 Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~---~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~ 137 (285)
T PRK14189 61 GFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDS---HKVIEAIAPEKDVDGFHVANAGALMTGQPLF 137 (285)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCH---HHHHhhcCcccCcccCChhhhhHhhCCCCCC
Confidence 577655555543 4677777777663 443 21 232 23222 223332221112223332222 23
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcchh-hHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAGAA-ALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT 252 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG~a-g~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~ 252 (766)
.-+|-.|++.-|+..+.+++..+++++|.|.- |.-++.+|.+.|.+ +++|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~at---Vt~~hs~----------------------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGAT---VTICHSK----------------------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE---EEEecCC-----------------------
Confidence 45678899999999999999999999999998 99999999998876 7777653
Q ss_pred CCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
..+|.+.++++|++|-..+ ++.|++++++.
T Consensus 192 t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~ 222 (285)
T PRK14189 192 TRDLAAHTRQADIVVAAVGKRNVLTADMVKP 222 (285)
T ss_pred CCCHHHHhhhCCEEEEcCCCcCccCHHHcCC
Confidence 1247788999999987765 88999887764
No 94
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=94.83 E-value=0.41 Score=53.98 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=89.3
Q ss_pred CCcEEec---CCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCC
Q psy14495 162 KIPVFHD---DQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSE 238 (766)
Q Consensus 162 ~~~~fnD---D~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~ 238 (766)
+|++.|- --+..|=-+++.+++..|..|..|++.++.|+|.|..|-.+|+.+...|+. +..+|.. +.+
T Consensus 81 gI~v~napg~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~---V~~~dp~------~~~ 151 (378)
T PRK15438 81 GIGFSAAPGCNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIK---TLLCDPP------RAD 151 (378)
T ss_pred CCEEEECCCcCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCE---EEEECCc------ccc
Confidence 6778774 234556668999999999889999999999999999999999999999987 8888862 111
Q ss_pred CCcHHHHHhccccCCCCHHHHhccCcEEE---ecC------CCCCCCHHHHHhhccCcEEEeccC
Q psy14495 239 LMDSNKARFIKDTTARTLSDIIPNADIFL---GLS------VSGVLKKEMVLQMAKNPIILALAN 294 (766)
Q Consensus 239 ~l~~~k~~~a~~~~~~~L~e~i~~~~vli---G~S------~~g~ft~evv~~M~~~PiIfaLsN 294 (766)
. .. .....+|.|+++.+|+++ -+. +-+.|+++.++.|.+..++.-.|.
T Consensus 152 ~-~~-------~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aR 208 (378)
T PRK15438 152 R-GD-------EGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACR 208 (378)
T ss_pred c-cc-------ccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCC
Confidence 0 00 012347999999999875 221 236899999999999999987665
No 95
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.76 E-value=0.095 Score=57.10 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=98.9
Q ss_pred cCCCccccCCCCC-CHHHHHHHHHHhC--CCccc--cccccCCCCchHHHHHHHhhcCCCcEEecCCc--------hhHH
Q psy14495 109 AGIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INLEDIKAPECFYIEKKLRNHMKIPVFHDDQH--------GTAI 175 (766)
Q Consensus 109 ~gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~ED~~~~~af~il~~~~~~~~~~~fnDD~q--------GTa~ 175 (766)
-||++-.+.+..+ ..++|++.+..+- |+.-+ +|+==-+.-+..++++.....-++=.||..-. +-.-
T Consensus 61 ~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~P 140 (301)
T PRK14194 61 AGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQGRDVLTP 140 (301)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcCCCCCCC
Confidence 4677655555433 5677777777663 43322 23221111222233332221112223332211 2234
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTAR 254 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~ 254 (766)
+|-.|++.=|+..|.+++..+|+|+|.| ..|..+|.+|.+.|.+ +++++++ . .
T Consensus 141 cTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gat---Vtv~~~~-------t----------------~ 194 (301)
T PRK14194 141 CTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCS---VTVVHSR-------S----------------T 194 (301)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE---EEEECCC-------C----------------C
Confidence 5788999999999999999999999996 9999999999999976 8888763 0 1
Q ss_pred CHHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEecc
Q psy14495 255 TLSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALA 293 (766)
Q Consensus 255 ~L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLs 293 (766)
++.|+++++|++|=+-+ ++.+++++++ +.-+|.-+|
T Consensus 195 ~l~e~~~~ADIVIsavg~~~~v~~~~ik---~GaiVIDvg 231 (301)
T PRK14194 195 DAKALCRQADIVVAAVGRPRLIDADWLK---PGAVVIDVG 231 (301)
T ss_pred CHHHHHhcCCEEEEecCChhcccHhhcc---CCcEEEEec
Confidence 58899999999876554 7888888743 355555554
No 96
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.76 E-value=0.1 Score=56.13 Aligned_cols=114 Identities=19% Similarity=0.222 Sum_probs=70.3
Q ss_pred ccchhhhHHHHhhhc---CCCc--cccCCCCCCHHHHHHHHHHhCCCcccc-----------cccc--------CCCCch
Q psy14495 95 KPVMEGKAVLFKKFA---GIDV--FDLEINETDPDKLCDIIFSLEPTFGGI-----------NLED--------IKAPEC 150 (766)
Q Consensus 95 ~~i~~gK~~ly~~~~---gi~~--l~v~~~~~~~~~~v~~v~~~~p~~g~i-----------~~ED--------~~~~~a 150 (766)
-|+..+.. ++.++- |+|. +++ +.++.++|++.++.. +|.++ .+=| +++-|+
T Consensus 18 ~P~~~Sp~-ihn~~f~~~gl~~~Y~~~--~~~~l~~~~~~l~~~--~~~G~nVT~P~K~~~~~~lD~l~~~A~~iGAVNT 92 (272)
T PRK12550 18 RPSNFGTR-FHNYLYEALGLNFLYKAF--TTTDLTAAIGGVRAL--GIRGCAVSMPFKEAVIPLVDELDPSAQAIESVNT 92 (272)
T ss_pred cchhcCHH-HHHHHHHHcCCCcEEEec--CHhHHHHHHHHHHhc--CCCEEEECcCCHHHHHHHhhcCCHHHHHhCCeeE
Confidence 56666665 344333 7883 444 345567777766553 44442 2222 333333
Q ss_pred HHHHHHHhhcCCCcEEecCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 151 FYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 151 f~il~~~~~~~~~~~fnDD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.. .++ -.+.=||-|- .|++.+|+..+.+. +.+++++|||-|+-+++-.|.+.|+. ++++++++
T Consensus 93 i~----~~~-g~l~G~NTD~--------~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~~g~~--~i~i~nR~ 155 (272)
T PRK12550 93 IV----NTD-GHLKAYNTDY--------IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRDAGFT--DGTIVARN 155 (272)
T ss_pred EE----eeC-CEEEEEecCH--------HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHHCCCC--EEEEEeCC
Confidence 21 011 1234566665 45667777666653 45999999999999999999999987 79999884
No 97
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.73 E-value=0.29 Score=52.92 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=97.8
Q ss_pred CCCccccCCCCC-CHHHHHHHHHHhC--CCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecC--------Cchh
Q psy14495 110 GIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDD--------QHGT 173 (766)
Q Consensus 110 gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD--------~qGT 173 (766)
||++-.+.+..+ ..++|.+.+..+- |+.-+ +|+ +.+.....++.++-.+ ++=.||.- ..+-
T Consensus 60 Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~K---DVDGl~~~n~g~l~~g~~~~ 136 (281)
T PRK14183 60 GIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKK---DVDGFHPYNVGRLVTGLDGF 136 (281)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchh---cccccChhhhhHHhcCCCCC
Confidence 577555554433 5677888887773 54422 333 2333222222222222 23344432 2233
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT 252 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~ 252 (766)
.-+|-+|++.=|+..+.+++..++|++|-+ ..|.-+|.||.+.|.+ +.+|+|+ +
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~At---Vti~hs~---T------------------- 191 (281)
T PRK14183 137 VPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANAT---VDICHIF---T------------------- 191 (281)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE---EEEeCCC---C-------------------
Confidence 456888999999999999999999999998 8999999999998866 7777763 1
Q ss_pred CCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-..+ ++.++.||++.
T Consensus 192 -~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~ 221 (281)
T PRK14183 192 -KDLKAHTKKADIVIVGVGKPNLITEDMVKE 221 (281)
T ss_pred -cCHHHHHhhCCEEEEecCcccccCHHHcCC
Confidence 127788899999998777 89999999875
No 98
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.61 E-value=0.055 Score=53.17 Aligned_cols=81 Identities=22% Similarity=0.380 Sum_probs=52.2
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHH--Hhccc----cC---CCCHHHHhccCcEE
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKA--RFIKD----TT---ARTLSDIIPNADIF 266 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~--~~a~~----~~---~~~L~e~i~~~~vl 266 (766)
||.|+|||+.|+++|..|...| .+++|++++.-.. +.++..+. .|... .+ ..+|+++++++|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g---~~V~l~~~~~~~~----~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG---HEVTLWGRDEEQI----EEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT---EEEEEETSCHHHH----HHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC---CEEEEEeccHHHH----HHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 7999999999999999999998 3577777753111 11222111 11111 11 25899999999976
Q ss_pred EecCCCCCCCHHHHHhhc
Q psy14495 267 LGLSVSGVLKKEMVLQMA 284 (766)
Q Consensus 267 iG~S~~g~ft~evv~~M~ 284 (766)
| +..|-.+-+++++.+.
T Consensus 74 i-iavPs~~~~~~~~~l~ 90 (157)
T PF01210_consen 74 I-IAVPSQAHREVLEQLA 90 (157)
T ss_dssp E-E-S-GGGHHHHHHHHT
T ss_pred E-ecccHHHHHHHHHHHh
Confidence 6 5544445688888888
No 99
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.61 E-value=0.33 Score=52.36 Aligned_cols=144 Identities=17% Similarity=0.266 Sum_probs=99.8
Q ss_pred CCCccccCCCCC-CHHHHHHHHHHh--CCCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecCCchh--------
Q psy14495 110 GIDVFDLEINET-DPDKLCDIIFSL--EPTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDDQHGT-------- 173 (766)
Q Consensus 110 gi~~l~v~~~~~-~~~~~v~~v~~~--~p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD~qGT-------- 173 (766)
||++-.+.+..+ ..++|++.++.+ .|+.-+ +|+ +.+.. .++++.....-++=.||..-.|-
T Consensus 61 Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~---~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~ 137 (278)
T PRK14172 61 GIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDE---KKITNKIDANKDIDCLTFISVGKFYKGEKCF 137 (278)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCH---HHHHhccCcccccCccCHhhHHHHhCCCCCC
Confidence 677655555543 467788888877 354322 444 34433 23333332211333555444442
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT 252 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~ 252 (766)
.-+|-+|++.=|+..+.+++..++|++|-+ ..|--++.||.+.|.+ +++|+|+.
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~At---Vt~chs~T---------------------- 192 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENAT---VTICHSKT---------------------- 192 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE---EEEeCCCC----------------------
Confidence 456888999999999999999999999976 4788899999998876 88888741
Q ss_pred CCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-.-+ ++.+++||++.
T Consensus 193 -~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~ 222 (278)
T PRK14172 193 -KNLKEVCKKADILVVAIGRPKFIDEEYVKE 222 (278)
T ss_pred -CCHHHHHhhCCEEEEcCCCcCccCHHHcCC
Confidence 137888899999998877 89999999875
No 100
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.59 E-value=0.059 Score=55.35 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=35.7
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
++|++.||+++|+|..|.-+|..|...|+. +|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~--~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVG--TIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCC--eEEEecCC
Confidence 568999999999999999999999999997 89999997
No 101
>PLN00106 malate dehydrogenase
Probab=94.43 E-value=0.16 Score=56.10 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=75.4
Q ss_pred HHHHHHHhHhCCcCCCceEEEECc-chhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc--c-cCCC
Q psy14495 179 SAILNGLKLVKKKMKDCKLVVSGA-GAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK--D-TTAR 254 (766)
Q Consensus 179 A~ll~al~~~~~~l~d~~iv~~Ga-G~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~--~-~~~~ 254 (766)
|.-|.|+|..|..-. .||+|+|| |.-|..+|..|...|+- +.+.|+|.+- .++-.-+|.+.-. +.+ . .+..
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~~~~~-~el~L~Di~~--~~g~a~Dl~~~~~-~~~i~~~~~~~ 78 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKMNPLV-SELHLYDIAN--TPGVAADVSHINT-PAQVRGFLGDD 78 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHhCCCC-CEEEEEecCC--CCeeEchhhhCCc-CceEEEEeCCC
Confidence 445678888887655 59999999 99999999999877764 2799999855 1111012322111 112 1 2456
Q ss_pred CHHHHhccCcEEEecCC----CCC-----------CCHHHHHhhc---cCcEEEeccCCCCc
Q psy14495 255 TLSDIIPNADIFLGLSV----SGV-----------LKKEMVLQMA---KNPIILALANPLPE 298 (766)
Q Consensus 255 ~L~e~i~~~~vliG~S~----~g~-----------ft~evv~~M~---~~PiIfaLsNPt~E 298 (766)
++.++++++|+.|=+.+ +|. ...++.+.+. .+.+|+.-|||.-.
T Consensus 79 d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~ 140 (323)
T PLN00106 79 QLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNS 140 (323)
T ss_pred CHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccc
Confidence 78999999998764443 231 2233444443 68999999999853
No 102
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.41 E-value=0.43 Score=52.82 Aligned_cols=119 Identities=16% Similarity=0.237 Sum_probs=82.1
Q ss_pred CCcEEecC---CchhHHHHHHHHHHHHhH-------------------hCCcCCCceEEEECcchhhHHHHHHHH-HcCC
Q psy14495 162 KIPVFHDD---QHGTAIIVGSAILNGLKL-------------------VKKKMKDCKLVVSGAGAAALACLDLII-DLGF 218 (766)
Q Consensus 162 ~~~~fnDD---~qGTa~v~lA~ll~al~~-------------------~~~~l~d~~iv~~GaG~ag~gia~~l~-~~g~ 218 (766)
+|++.|-- -+.+|=-+++.+|+.+|. .+..|.+.+|.|+|.|.-|..+|+.|. ..|+
T Consensus 92 gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~ 171 (332)
T PRK08605 92 NLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGS 171 (332)
T ss_pred CCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhcCCC
Confidence 67777742 234555567777765542 245688999999999999999999994 4566
Q ss_pred CCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEec-C----CCCCCCHHHHHhhccCcEEEecc
Q psy14495 219 PLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGL-S----VSGVLKKEMVLQMAKNPIILALA 293 (766)
Q Consensus 219 ~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~-S----~~g~ft~evv~~M~~~PiIfaLs 293 (766)
. +|.+|+.. . .....++. ...+|.|+++.+|+++=+ . +.+.++++.++.|.+..++.-+|
T Consensus 172 ~---V~~~d~~~----~------~~~~~~~~--~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~s 236 (332)
T PRK08605 172 D---VVAYDPFP----N------AKAATYVD--YKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCA 236 (332)
T ss_pred E---EEEECCCc----c------HhHHhhcc--ccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECC
Confidence 4 88888742 0 10111221 234799999999987643 2 14678899999999999888777
Q ss_pred CC
Q psy14495 294 NP 295 (766)
Q Consensus 294 NP 295 (766)
.=
T Consensus 237 RG 238 (332)
T PRK08605 237 RG 238 (332)
T ss_pred CC
Confidence 53
No 103
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.39 E-value=0.39 Score=53.24 Aligned_cols=170 Identities=13% Similarity=0.117 Sum_probs=104.6
Q ss_pred HHhhhcCCCccccCCCCCCHHHHHHHHHHhCCCccccccccCCCCchHHHHHHHhhcCCCcEEecCC---chhHHHHHHH
Q psy14495 104 LFKKFAGIDVFDLEINETDPDKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQ---HGTAIIVGSA 180 (766)
Q Consensus 104 ly~~~~gi~~l~v~~~~~~~~~~v~~v~~~~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~---qGTa~v~lA~ 180 (766)
+...+.+.|++=+.....-..++++. .|+.-.|+.--.+..|- . ++..++ .+|++.|--- +..|=-+++.
T Consensus 39 ~~~~~~~~d~~i~~~~~~~~~~~l~~----~p~Lk~I~~~~~G~d~i-d-~~~~~~-~gI~v~n~~g~~~~~vAE~~~~l 111 (333)
T PRK13243 39 LLEKVRDVDALVTMLSERIDCEVFEA----APRLRIVANYAVGYDNI-D-VEEATR-RGIYVTNTPGVLTEATADFAWAL 111 (333)
T ss_pred HHHHhCCCcEEEEeCCCCCCHHHHhh----CCCCeEEEecCcccccc-C-HHHHHH-cCCEEEECCCCChHHHHHHHHHH
Confidence 34455666643221111222334432 35544454444444431 1 223333 3688888422 2344456777
Q ss_pred HHHHHhH-------------------------hCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCC
Q psy14495 181 ILNGLKL-------------------------VKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKG 235 (766)
Q Consensus 181 ll~al~~-------------------------~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~ 235 (766)
+|+..|. .|..|.+++|.|+|.|..|-.+|+.+...|+. ++.+|+..
T Consensus 112 ~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~---V~~~d~~~----- 183 (333)
T PRK13243 112 LLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMR---ILYYSRTR----- 183 (333)
T ss_pred HHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCE---EEEECCCC-----
Confidence 7777664 24568999999999999999999999999985 88888732
Q ss_pred CCCCCcHHHHHhccccCCCCHHHHhccCcEEEec-CC----CCCCCHHHHHhhccCcEEEeccC
Q psy14495 236 RSELMDSNKARFIKDTTARTLSDIIPNADIFLGL-SV----SGVLKKEMVLQMAKNPIILALAN 294 (766)
Q Consensus 236 r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~-S~----~g~ft~evv~~M~~~PiIfaLsN 294 (766)
+ .. . ...+. ....+|.|+++.+|+++=. .. .+.|+++.+..|.+..++.-.|.
T Consensus 184 ~--~~-~-~~~~~--~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aR 241 (333)
T PRK13243 184 K--PE-A-EKELG--AEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTAR 241 (333)
T ss_pred C--hh-h-HHHcC--CEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcC
Confidence 1 11 1 11111 1234799999999986532 21 47899999999999999887775
No 104
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.33 E-value=0.066 Score=57.99 Aligned_cols=89 Identities=24% Similarity=0.392 Sum_probs=69.1
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc-----cCCCCHHHHhccCcEE
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD-----TTARTLSDIIPNADIF 266 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~-----~~~~~L~e~i~~~~vl 266 (766)
...-||+|+|.|-+|+-.|++..-.|.+ +.+.|.+ . +.|......|..+ .+...++|+++++|++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~---Vtild~n----~---~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlv 235 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGAD---VTILDLN----I---DRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLV 235 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCe---eEEEecC----H---HHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEE
Confidence 6788999999999999999998887765 7888863 2 2355555566654 2456799999999999
Q ss_pred EecC------CCCCCCHHHHHhhccCcEEE
Q psy14495 267 LGLS------VSGVLKKEMVLQMAKNPIIL 290 (766)
Q Consensus 267 iG~S------~~g~ft~evv~~M~~~PiIf 290 (766)
||.= .|-+.|+|+++.|.+.-+|.
T Consensus 236 IgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 236 IGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 8873 26689999999999766665
No 105
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.18 E-value=0.13 Score=55.48 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT 252 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~ 252 (766)
.-+|-.|++.=|+..+.+++..+++++|-+ .-|--+|.+|...|.+ +++++|+-
T Consensus 132 ~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~at---Vtv~hs~t---------------------- 186 (279)
T PRK14178 132 APCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADAT---VTICHSKT---------------------- 186 (279)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCe---eEEEecCh----------------------
Confidence 456788899999999999999999999999 8999999999988865 88887631
Q ss_pred CCCHHHHhccCcEEEecCC-CCCCCHHHHH
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SGVLKKEMVL 281 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g~ft~evv~ 281 (766)
.+|.+.++.+|++|+.-+ ++.+|++|++
T Consensus 187 -~~L~~~~~~ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 187 -ENLKAELRQADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred -hHHHHHHhhCCEEEECCCcccccCHHHcC
Confidence 248899999999999987 8999999974
No 106
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.17 E-value=0.61 Score=51.57 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=86.1
Q ss_pred CCcEEecCC---chhHHHHHHHHHHHHh------------------HhCCcCCCceEEEECcchhhHHHHHHHHHcCCCC
Q psy14495 162 KIPVFHDDQ---HGTAIIVGSAILNGLK------------------LVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPL 220 (766)
Q Consensus 162 ~~~~fnDD~---qGTa~v~lA~ll~al~------------------~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~ 220 (766)
+|+|+|-.- +..|=-+++.+|+..| ..|..|.++++-|+|.|.-|..+|+.+...|++
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~- 167 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMK- 167 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCe-
Confidence 466666544 3344456777777777 567788999999999999999999999999998
Q ss_pred ccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecC-----CCCCCCHHHHHhhccCcEEEeccC
Q psy14495 221 QNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLS-----VSGVLKKEMVLQMAKNPIILALAN 294 (766)
Q Consensus 221 ~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S-----~~g~ft~evv~~M~~~PiIfaLsN 294 (766)
+..+|+. ..+ ............+|.+.++.+|++.-.- +.|.++++-+..|.+.-|+.=.|.
T Consensus 168 --v~~~d~~----~~~------~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aR 234 (324)
T COG0111 168 --VIGYDPY----SPR------ERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAAR 234 (324)
T ss_pred --EEEECCC----Cch------hhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCC
Confidence 8888882 111 0111111123467999999999886441 268999999999997766664443
No 107
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.14 E-value=0.36 Score=52.01 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=80.6
Q ss_pred HHHHHHHhH-hCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc--CC-C
Q psy14495 179 SAILNGLKL-VKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT--TA-R 254 (766)
Q Consensus 179 A~ll~al~~-~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~--~~-~ 254 (766)
.|++.+++. .+.++++.+++|+|+|.+|-+++..|.+.|+. +++++++.. ++ .......+.... .. .
T Consensus 107 ~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~--~V~v~~R~~----~~---a~~l~~~~~~~~~~~~~~ 177 (278)
T PRK00258 107 IGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLDLGVA--EITIVNRTV----ER---AEELAKLFGALGKAELDL 177 (278)
T ss_pred HHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCC--EEEEEeCCH----HH---HHHHHHHhhhccceeecc
Confidence 456677764 56789999999999999999999999999976 799998841 11 222222232111 11 1
Q ss_pred CHHHHhccCcEEEecCCCCCCC-----HHHHHhhccCcEEEecc-CCCCccCHh--hHhcccCcEEEEcCCCCCcccccc
Q psy14495 255 TLSDIIPNADIFLGLSVSGVLK-----KEMVLQMAKNPIILALA-NPLPEILPE--DIKSVRNDAIIATGRSDYPNQVNN 326 (766)
Q Consensus 255 ~L~e~i~~~~vliG~S~~g~ft-----~evv~~M~~~PiIfaLs-NPt~E~~pe--~a~~~~~~ai~atG~~~~p~Q~NN 326 (766)
++.+.+..+|++|-+...|... +-....+.++.+||=+. || +-||= +|.+. | +-+..|..-.-.|+--
T Consensus 178 ~~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P--~~T~ll~~A~~~-G-~~~~~G~~Ml~~Qa~~ 253 (278)
T PRK00258 178 ELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP--LPTPFLAWAKAQ-G-ARTIDGLGMLVHQAAE 253 (278)
T ss_pred cchhccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC--CCCHHHHHHHHC-c-CeecCCHHHHHHHHHH
Confidence 3456677789999887534321 11123334566666553 44 33543 33333 2 4444675544455443
Q ss_pred c
Q psy14495 327 V 327 (766)
Q Consensus 327 ~ 327 (766)
.
T Consensus 254 ~ 254 (278)
T PRK00258 254 A 254 (278)
T ss_pred H
Confidence 3
No 108
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.14 E-value=0.41 Score=51.87 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=96.9
Q ss_pred cCCCccccCCCCC-CHHHHHHHHHHhC--CCccc--cccccCCCCchHHHHHHHhhcCCCcEEecCCc--------hhHH
Q psy14495 109 AGIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INLEDIKAPECFYIEKKLRNHMKIPVFHDDQH--------GTAI 175 (766)
Q Consensus 109 ~gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~ED~~~~~af~il~~~~~~~~~~~fnDD~q--------GTa~ 175 (766)
-||++-.+.+..+ .-++|++.++.+- |+.=+ +|+==...-+..++++...-.-++=.||..-. +-.-
T Consensus 60 ~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~P 139 (284)
T PRK14179 60 AGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSGRPVMIP 139 (284)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCCCCCCcC
Confidence 3677655555543 4678888888773 44322 33221111123333333321112334443322 2345
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECc-chhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGA-GAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTAR 254 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~Ga-G~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~ 254 (766)
+|-+|++.=|+..+.+++..+++|+|- |..|.-+|.+|.+.|.+ ++++.++ . .
T Consensus 140 cTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gat---Vtv~~s~-------t----------------~ 193 (284)
T PRK14179 140 CTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNAT---VTLTHSR-------T----------------R 193 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCE---EEEECCC-------C----------------C
Confidence 678888999999999999999999999 99999999999999876 7766442 1 1
Q ss_pred CHHHHhccCcEEEecCC-CCCCCHHHHH
Q psy14495 255 TLSDIIPNADIFLGLSV-SGVLKKEMVL 281 (766)
Q Consensus 255 ~L~e~i~~~~vliG~S~-~g~ft~evv~ 281 (766)
+|.+.++++|++|-.-+ ++.+++++++
T Consensus 194 ~l~~~~~~ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 194 NLAEVARKADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred CHHHHHhhCCEEEEecCccccCCHHHcc
Confidence 48899999999987766 8889887744
No 109
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.09 E-value=0.089 Score=54.06 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=35.3
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+|++.||+|+|+|.-|..||..|...|+. ++.++|.+
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg--~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIG--KLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCC--EEEEECCC
Confidence 458889999999999999999999999997 79999997
No 110
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.82 E-value=0.29 Score=52.92 Aligned_cols=145 Identities=19% Similarity=0.275 Sum_probs=100.1
Q ss_pred cCCCccccCCCC-CCHHHHHHHHHHh--CCCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecC---------Cc
Q psy14495 109 AGIDVFDLEINE-TDPDKLCDIIFSL--EPTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDD---------QH 171 (766)
Q Consensus 109 ~gi~~l~v~~~~-~~~~~~v~~v~~~--~p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD---------~q 171 (766)
-||++-.+.+.. ...++|++.+..+ .|+.-+ +|+ +++.....++.+.-.+| +=.||.. ..
T Consensus 58 ~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KD---VDGl~~~N~g~l~~g~~~ 134 (282)
T PRK14166 58 CGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKD---VDGFHPINVGYLNLGLES 134 (282)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccC---cccCChhhhHHHhcCCCC
Confidence 367765555554 3577899888877 355522 343 34433333333332232 2233322 23
Q ss_pred hhHHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc
Q psy14495 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD 250 (766)
Q Consensus 172 GTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~ 250 (766)
+-.-+|-.|++.=|+..+.+++.+++|++|-+ ..|--+|.||.+.|.+ +++|+|+-
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at---Vt~chs~T-------------------- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGAT---VSVCHIKT-------------------- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE---EEEeCCCC--------------------
Confidence 44567888999999999999999999999976 4688899999988866 88888731
Q ss_pred cCCCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 251 TTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 251 ~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-.-+ ++.++++|++.
T Consensus 192 ---~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~ 221 (282)
T PRK14166 192 ---KDLSLYTRQADLIIVAAGCVNLLRSDMVKE 221 (282)
T ss_pred ---CCHHHHHhhCCEEEEcCCCcCccCHHHcCC
Confidence 238888999999998877 89999999875
No 111
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.72 E-value=0.46 Score=51.53 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=96.2
Q ss_pred cCCCccccCCCC-CCHHHHHHHHHHhC--CCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecCCc--------h
Q psy14495 109 AGIDVFDLEINE-TDPDKLCDIIFSLE--PTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDDQH--------G 172 (766)
Q Consensus 109 ~gi~~l~v~~~~-~~~~~~v~~v~~~~--p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD~q--------G 172 (766)
-||++-.+.+.. ..-++|++.++.+- |+.-+ +|+ +.+.. .++++.....-++=.||..-. +
T Consensus 59 ~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~---~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~ 135 (286)
T PRK14184 59 AGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDS---QRCLELIDPAKDVDGFHPENMGRLALGLPG 135 (286)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCH---HHHHhccCcccCcccCCHhhHHHHhCCCCC
Confidence 367765555544 34677888888773 54422 343 23332 233333221112334443322 2
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHH----cCCCCccEEEEcCCccccCCCCCCCcHHHHHh
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIID----LGFPLQNIFVTDLAGVLYKGRSELMDSNKARF 247 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~----~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~ 247 (766)
-.-+|-.|++.=|+..+.+++..++|++|-+. .|.-++.||.+ .|. .+++++++.
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~A---tVt~~hs~t----------------- 195 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANA---TVTVCHSRT----------------- 195 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCC---EEEEEeCCc-----------------
Confidence 34568889999999999999999999999764 68888999987 443 477777631
Q ss_pred ccccCCCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 248 IKDTTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 248 a~~~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
.+|.+.++++|++|+.-+ ++.++++||+.
T Consensus 196 ------~~l~~~~~~ADIVI~AvG~p~li~~~~vk~ 225 (286)
T PRK14184 196 ------PDLAEECREADFLFVAIGRPRFVTADMVKP 225 (286)
T ss_pred ------hhHHHHHHhCCEEEEecCCCCcCCHHHcCC
Confidence 238889999999999987 89999999843
No 112
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=93.58 E-value=0.28 Score=48.72 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT 252 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~ 252 (766)
--+|-.|++--|+..+.+++..+++++|.+. -|.-++.||.+.|.+ +.+++++-
T Consensus 16 ~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~at---Vt~~h~~T---------------------- 70 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGAT---VTICHSKT---------------------- 70 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-E---EEEE-TTS----------------------
T ss_pred cCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCe---EEeccCCC----------------------
Confidence 3457788888899999999999999999985 899999999999887 78888741
Q ss_pred CCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
.+|.+.++.+|++|-..+ ++.++.+++|.
T Consensus 71 -~~l~~~~~~ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 71 -KNLQEITRRADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp -SSHHHHHTTSSEEEE-SSSTT-B-GGGS-T
T ss_pred -CcccceeeeccEEeeeeccccccccccccC
Confidence 237778899999998887 89999888765
No 113
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.50 E-value=0.71 Score=51.14 Aligned_cols=117 Identities=19% Similarity=0.228 Sum_probs=79.3
Q ss_pred CCcEEec-CC--chhHHHHHHHHHHHHhH-------------------hCCcCCCceEEEECcchhhHHHHHHHHHcCCC
Q psy14495 162 KIPVFHD-DQ--HGTAIIVGSAILNGLKL-------------------VKKKMKDCKLVVSGAGAAALACLDLIIDLGFP 219 (766)
Q Consensus 162 ~~~~fnD-D~--qGTa~v~lA~ll~al~~-------------------~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~ 219 (766)
+|++.|- +. +.+|=-+++-+|+.+|- .+..|.+.+|.|+|.|..|..+|+.|...|.+
T Consensus 92 gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~ 171 (330)
T PRK12480 92 NIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGAT 171 (330)
T ss_pred CCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence 5666663 22 23444456666665553 23468899999999999999999999999976
Q ss_pred CccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEE-ecCC----CCCCCHHHHHhhccCcEEEeccC
Q psy14495 220 LQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFL-GLSV----SGVLKKEMVLQMAKNPIILALAN 294 (766)
Q Consensus 220 ~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vli-G~S~----~g~ft~evv~~M~~~PiIfaLsN 294 (766)
++.+|+.. +. . ..+.+ -..+|.|+++++|+++ -+.. .+.|.++++..|.+..++.-.|.
T Consensus 172 ---V~~~d~~~----~~---~----~~~~~--~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aR 235 (330)
T PRK12480 172 ---ITAYDAYP----NK---D----LDFLT--YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAAR 235 (330)
T ss_pred ---EEEEeCCh----hH---h----hhhhh--ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCC
Confidence 88888641 10 0 11111 1247999999999765 2322 25788899999988887776554
No 114
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.44 E-value=0.65 Score=50.29 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=95.9
Q ss_pred cCCCccccCCCCC-CHHHHHHHHHHhC--CCc-cc-cccccCCCCchHHHHHHHhhcCCCcEEecCCc--------hhHH
Q psy14495 109 AGIDVFDLEINET-DPDKLCDIIFSLE--PTF-GG-INLEDIKAPECFYIEKKLRNHMKIPVFHDDQH--------GTAI 175 (766)
Q Consensus 109 ~gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~-g~-i~~ED~~~~~af~il~~~~~~~~~~~fnDD~q--------GTa~ 175 (766)
-||++-.+.+..+ +.++|++.++.+- |+. |. +|+==-+.-+..++++.....-++=.||.--. +-.-
T Consensus 61 ~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~P 140 (284)
T PRK14177 61 VGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMGVETYLP 140 (284)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHHHHHcCCCCCCC
Confidence 3576555555443 5778888887764 444 32 33321111122333333221112223332222 1234
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTAR 254 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~ 254 (766)
+|-.|++.=|+-.+.+++.+++|++|.+ ..|--+|.||.+.|.+ +++|+|+- .
T Consensus 141 cTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~at---Vt~chs~T-----------------------~ 194 (284)
T PRK14177 141 CTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNAT---VTLCHSKT-----------------------Q 194 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE---EEEeCCCC-----------------------C
Confidence 4677888888899999999999999975 4688899999998876 88888741 1
Q ss_pred CHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 255 TLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 255 ~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
+|.+.++++|++|-.-+ ++.++.||++.
T Consensus 195 ~l~~~~~~ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 195 NLPSIVRQADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred CHHHHHhhCCEEEEeCCCcCccCHHHcCC
Confidence 37788899999998777 89999999886
No 115
>PLN03139 formate dehydrogenase; Provisional
Probab=93.42 E-value=1 Score=51.06 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=96.5
Q ss_pred CCCccccccccCCCCchHHHHHHHhhcCCCcEEecCC---chhHHHHHHHHHHHHhH--------------------hCC
Q psy14495 134 EPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQ---HGTAIIVGSAILNGLKL--------------------VKK 190 (766)
Q Consensus 134 ~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~---qGTa~v~lA~ll~al~~--------------------~~~ 190 (766)
.|+.-.|+.--.+..|- . ++...+ .+|+|.|-.- +-.|=-+++-+|+.+|- .+.
T Consensus 119 ap~LK~I~~~g~G~D~i-D-l~aa~~-~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 195 (386)
T PLN03139 119 AKNLELLLTAGIGSDHI-D-LPAAAA-AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAY 195 (386)
T ss_pred CCCccEEEECCcccccc-C-HHHHHH-CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCc
Confidence 46665566555555542 2 223333 3789998532 23444567777777762 234
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEE-ec
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFL-GL 269 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vli-G~ 269 (766)
.|.+.+|.|+|.|..|..+|+.|...|+. ++.+|+... . . ...+..-+. ...+|.|+++.+|+++ =+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~---V~~~d~~~~----~-~--~~~~~~g~~--~~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCN---LLYHDRLKM----D-P--ELEKETGAK--FEEDLDAMLPKCDVVVINT 263 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCE---EEEECCCCc----c-h--hhHhhcCce--ecCCHHHHHhhCCEEEEeC
Confidence 68999999999999999999999999986 788887532 0 0 111111011 1247999999999865 22
Q ss_pred C----CCCCCCHHHHHhhccCcEEEeccC
Q psy14495 270 S----VSGVLKKEMVLQMAKNPIILALAN 294 (766)
Q Consensus 270 S----~~g~ft~evv~~M~~~PiIfaLsN 294 (766)
. +.+.|+++.+..|.+.-+++-.|.
T Consensus 264 Plt~~T~~li~~~~l~~mk~ga~lIN~aR 292 (386)
T PLN03139 264 PLTEKTRGMFNKERIAKMKKGVLIVNNAR 292 (386)
T ss_pred CCCHHHHHHhCHHHHhhCCCCeEEEECCC
Confidence 2 146899999999999888886664
No 116
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.33 E-value=0.16 Score=55.19 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=70.0
Q ss_pred cCCCc--cccCCCCCCHHHHHHHHHHhCCCccc-----------cccccCCCCchHHHHH----HHhhcCCCcEEecCCc
Q psy14495 109 AGIDV--FDLEINETDPDKLCDIIFSLEPTFGG-----------INLEDIKAPECFYIEK----KLRNHMKIPVFHDDQH 171 (766)
Q Consensus 109 ~gi~~--l~v~~~~~~~~~~v~~v~~~~p~~g~-----------i~~ED~~~~~af~il~----~~~~~~~~~~fnDD~q 171 (766)
-|+|. .++.+..++.++|++.++.. .|.+ +.+=|--++.|..+=- ..++ -.+-=||-|-
T Consensus 33 ~gl~~~Y~~~~v~~~~l~~~~~~l~~~--~~~G~nVTiP~K~~~~~~~D~l~~~A~~iGAVNTv~~~~-g~l~G~NTD~- 108 (288)
T PRK12749 33 AGLPFTYMAFEVDNDSFPGAIEGLKAL--KMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDD-GYLRGYNTDG- 108 (288)
T ss_pred cCCCeEEEEEecCHHHHHHHHHHHHhc--CCCEEEECcCCHHHHHHHhccCCHHHHHhCceeEEEccC-CEEEEEecCH-
Confidence 37883 56666655666777666544 3433 2333333333222100 0111 1233466665
Q ss_pred hhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 172 GTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.|++.+|+..+.++++.+++++|||-|+-+|+-.|...|++ +|+++++.
T Consensus 109 -------~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~--~i~i~nRt 157 (288)
T PRK12749 109 -------TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLK--EIKLFNRR 157 (288)
T ss_pred -------HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCC--EEEEEeCC
Confidence 45677888788889999999999999999999999999987 89999984
No 117
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.27 E-value=0.83 Score=50.23 Aligned_cols=100 Identities=18% Similarity=0.284 Sum_probs=70.7
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEec
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGL 269 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~ 269 (766)
..++++++.|+|-|.-|..+|+.|...|+. ++.+|+.. ...+... .+ ....+|.|+++++|+++=+
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~---V~~~~~~~----~~~~~~~----~~---~~~~~l~e~l~~aDvvv~~ 197 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFP---LRCWSRSR----KSWPGVQ----SF---AGREELSAFLSQTRVLINL 197 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCC----CCCCCce----ee---cccccHHHHHhcCCEEEEC
Confidence 468899999999999999999999999986 78888632 1111111 11 1245799999999987622
Q ss_pred -C----CCCCCCHHHHHhhccCcEEEeccCCCCccCHhhHh
Q psy14495 270 -S----VSGVLKKEMVLQMAKNPIILALANPLPEILPEDIK 305 (766)
Q Consensus 270 -S----~~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~ 305 (766)
. +.+.|+++.+..|.+..++.=.+. -++--|+|.
T Consensus 198 lPlt~~T~~li~~~~l~~mk~ga~lIN~aR--G~vVde~aL 236 (312)
T PRK15469 198 LPNTPETVGIINQQLLEQLPDGAYLLNLAR--GVHVVEDDL 236 (312)
T ss_pred CCCCHHHHHHhHHHHHhcCCCCcEEEECCC--ccccCHHHH
Confidence 1 146899999999998888876664 244444443
No 118
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=93.23 E-value=1.2 Score=49.01 Aligned_cols=117 Identities=14% Similarity=0.184 Sum_probs=86.0
Q ss_pred CCCcEEecC-C--chhHHHHHHHHHHHHhHh------------------------CCcCCCceEEEECcchhhHHHHHHH
Q psy14495 161 MKIPVFHDD-Q--HGTAIIVGSAILNGLKLV------------------------KKKMKDCKLVVSGAGAAALACLDLI 213 (766)
Q Consensus 161 ~~~~~fnDD-~--qGTa~v~lA~ll~al~~~------------------------~~~l~d~~iv~~GaG~ag~gia~~l 213 (766)
.+|++.|-- . ..+|=-+++-+|+..|.. +..|.+.++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 368888842 2 345666777777777632 2468999999999999999999999
Q ss_pred HHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEec---C--CCCCCCHHHHHhhccCcE
Q psy14495 214 IDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGL---S--VSGVLKKEMVLQMAKNPI 288 (766)
Q Consensus 214 ~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~---S--~~g~ft~evv~~M~~~Pi 288 (766)
...|+. ++.+|+.+- .... .| ...+|.|+++.+|+++=. + +.+.|+++.+..|.+..+
T Consensus 165 ~~fgm~---V~~~d~~~~---~~~~-------~~----~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~ 227 (311)
T PRK08410 165 QAFGAK---VVYYSTSGK---NKNE-------EY----ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAI 227 (311)
T ss_pred hhcCCE---EEEECCCcc---cccc-------Cc----eeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeE
Confidence 999986 888888431 1000 01 124799999999986522 2 258999999999999999
Q ss_pred EEeccC
Q psy14495 289 ILALAN 294 (766)
Q Consensus 289 IfaLsN 294 (766)
+.-.|.
T Consensus 228 lIN~aR 233 (311)
T PRK08410 228 LINVGR 233 (311)
T ss_pred EEECCC
Confidence 886665
No 119
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.22 E-value=0.27 Score=53.20 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT 252 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~ 252 (766)
.-+|-.|++.-|+..+.+++..++|++|.+ ..|.-+|.||.+.|.+ +++|+|+-
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~at---Vt~chs~t---------------------- 192 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENAT---VTYCHSKT---------------------- 192 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE---EEEEeCCc----------------------
Confidence 456788899999999999999999999975 5788899999988866 88887620
Q ss_pred CCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
.+|.+.++++|++|.+.+ ++.+++++++.
T Consensus 193 -~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~ 222 (284)
T PRK14190 193 -KNLAELTKQADILIVAVGKPKLITADMVKE 222 (284)
T ss_pred -hhHHHHHHhCCEEEEecCCCCcCCHHHcCC
Confidence 248889999999999887 89999999864
No 120
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.15 E-value=0.64 Score=50.75 Aligned_cols=142 Identities=16% Similarity=0.251 Sum_probs=92.7
Q ss_pred cCCCccccCCCC-CCHHHHHHHHHHhC--CCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecCCch--------
Q psy14495 109 AGIDVFDLEINE-TDPDKLCDIIFSLE--PTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDDQHG-------- 172 (766)
Q Consensus 109 ~gi~~l~v~~~~-~~~~~~v~~v~~~~--p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD~qG-------- 172 (766)
-||++.-+.+.. ...+||.+.+..+- |+.=+ +|+ +.+.....++-+.-.+ ++=.||....|
T Consensus 60 ~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~K---DVDGl~~~n~g~l~~~~~~ 136 (296)
T PRK14188 60 AGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEK---DVDGLHVVNAGRLATGETA 136 (296)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCccc---ccccCChhhHHHHhCCCCC
Confidence 367755555543 35678888888774 44322 232 2333222222222222 23344443332
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEEC-cchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSG-AGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT 251 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~G-aG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~ 251 (766)
-.-+|-.|++.=|+..+.+++.++|+|+| .|..|..+|.+|.+.|.+ +++++++ ..
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~t---Vtv~~~r-------T~------------- 193 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANAT---VTIAHSR-------TR------------- 193 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCE---EEEECCC-------CC-------------
Confidence 24567888888899999999999999999 999999999999999976 8877652 11
Q ss_pred CCCCHHHHhccCcEEEecCC-CCCCCHHH
Q psy14495 252 TARTLSDIIPNADIFLGLSV-SGVLKKEM 279 (766)
Q Consensus 252 ~~~~L~e~i~~~~vliG~S~-~g~ft~ev 279 (766)
+|.|+++++|++|-+-+ +..+++++
T Consensus 194 ---~l~e~~~~ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 194 ---DLPAVCRRADILVAAVGRPEMVKGDW 219 (296)
T ss_pred ---CHHHHHhcCCEEEEecCChhhcchhe
Confidence 37888999999875544 66777665
No 121
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.01 E-value=0.25 Score=52.96 Aligned_cols=103 Identities=19% Similarity=0.354 Sum_probs=62.9
Q ss_pred CCC--ccccCCCCCCHHHHHHHHHHhCCCccccccccCCCC---chHHHHHHHh--------------hcCCCcEEecCC
Q psy14495 110 GID--VFDLEINETDPDKLCDIIFSLEPTFGGINLEDIKAP---ECFYIEKKLR--------------NHMKIPVFHDDQ 170 (766)
Q Consensus 110 gi~--~l~v~~~~~~~~~~v~~v~~~~p~~g~i~~ED~~~~---~af~il~~~~--------------~~~~~~~fnDD~ 170 (766)
|+| .+++.+..++.++|++.++.. +|.+++. ..| .+++++++.- +.-.+.-||-|-
T Consensus 27 g~~~~y~~~~v~~~~l~~~~~~~~~~--~~~G~nV---T~P~K~~~~~~~d~~~~~A~~~gavNti~~~~g~l~g~NTD~ 101 (270)
T TIGR00507 27 GLEGPYIAFLVPPDDLEDALSGFFAL--GFKGANV---TSPFKEEAFQFLDEIDERAKLAGAVNTLKLEDGKLVGYNTDG 101 (270)
T ss_pred CCCcEEEEEecCHHHHHHHHHHHHhc--CCCEEEE---CcCCHHHHHHHhhhCCHHHHHhCCceEEEeeCCEEEEEcCCH
Confidence 677 456666556677777777654 4544321 222 1222222211 111233455554
Q ss_pred chhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 171 HGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 171 qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
.|++.+++..+...+..+++|+|+|.+|.+++..|.+.|. +++++|+
T Consensus 102 --------~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~~g~---~v~v~~R 148 (270)
T TIGR00507 102 --------IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLKADC---NVIIANR 148 (270)
T ss_pred --------HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHHCCC---EEEEEeC
Confidence 4455566554455667899999999999999999999884 5888886
No 122
>PLN02306 hydroxypyruvate reductase
Probab=92.98 E-value=1.1 Score=50.91 Aligned_cols=124 Identities=17% Similarity=0.202 Sum_probs=84.1
Q ss_pred CCcEEecCC---chhHHHHHHHHHHHHhHh---------------------CCcCCCceEEEECcchhhHHHHHHHH-Hc
Q psy14495 162 KIPVFHDDQ---HGTAIIVGSAILNGLKLV---------------------KKKMKDCKLVVSGAGAAALACLDLII-DL 216 (766)
Q Consensus 162 ~~~~fnDD~---qGTa~v~lA~ll~al~~~---------------------~~~l~d~~iv~~GaG~ag~gia~~l~-~~ 216 (766)
+|++.|--- ..+|=-+++-+|+.+|-. |..|.+.++.|+|.|..|..+|+++. ..
T Consensus 109 gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~f 188 (386)
T PLN02306 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (386)
T ss_pred CCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 688888532 234444666666665431 34688999999999999999999986 77
Q ss_pred CCCCccEEEEcCCccccCCCCCCCcHHHHHhc-----------cccCCCCHHHHhccCcEEEec-C----CCCCCCHHHH
Q psy14495 217 GFPLQNIFVTDLAGVLYKGRSELMDSNKARFI-----------KDTTARTLSDIIPNADIFLGL-S----VSGVLKKEMV 280 (766)
Q Consensus 217 g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a-----------~~~~~~~L~e~i~~~~vliG~-S----~~g~ft~evv 280 (766)
|+. ++.+|+..- +........|. ......+|.|+++.+|+++-. . +.|.|+++.+
T Consensus 189 Gm~---V~~~d~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l 259 (386)
T PLN02306 189 KMN---LIYYDLYQS------TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERL 259 (386)
T ss_pred CCE---EEEECCCCc------hhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHH
Confidence 886 888887421 01111101111 001124799999999988763 2 2689999999
Q ss_pred HhhccCcEEEeccC
Q psy14495 281 LQMAKNPIILALAN 294 (766)
Q Consensus 281 ~~M~~~PiIfaLsN 294 (766)
+.|.+..++.=.|.
T Consensus 260 ~~MK~ga~lIN~aR 273 (386)
T PLN02306 260 ALMKKEAVLVNASR 273 (386)
T ss_pred HhCCCCeEEEECCC
Confidence 99999888887664
No 123
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.77 E-value=0.21 Score=54.13 Aligned_cols=57 Identities=23% Similarity=0.210 Sum_probs=46.0
Q ss_pred CcEEecCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 163 IPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 163 ~~~fnDD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+.=||-|- .|++.+|+..+.++++.+++++|||-|+-+|+-.|.+.|++ +|+++|+.
T Consensus 104 l~G~NTD~--------~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~--~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDV--------SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQ--KLQVADLD 160 (283)
T ss_pred EEEEcCCH--------HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHCCCC--EEEEEcCC
Confidence 34566665 45677777555568889999999999999999999999987 89999883
No 124
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.71 E-value=0.35 Score=53.25 Aligned_cols=103 Identities=16% Similarity=0.245 Sum_probs=61.8
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc-c---cCCCCHHHHhccCcEEEe
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK-D---TTARTLSDIIPNADIFLG 268 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~-~---~~~~~L~e~i~~~~vliG 268 (766)
+..||.|+|||+.|.+++.++...|+. .++|+|.+-=...+..-++.+. ..+.. . +...+++ +++++|++|=
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~--~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l~~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLG--DVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-DIKDSDVVVI 79 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCC--eEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-HhCCCCEEEE
Confidence 445999999999999999999998974 5999997421111110012221 11111 1 1124565 7799998763
Q ss_pred cCC----CC-----------CCCHHHHHhhc---cCcEEEeccCCCCcc
Q psy14495 269 LSV----SG-----------VLKKEMVLQMA---KNPIILALANPLPEI 299 (766)
Q Consensus 269 ~S~----~g-----------~ft~evv~~M~---~~PiIfaLsNPt~E~ 299 (766)
+.+ +| .+-.++.+.|. +.-+++-.|||..-.
T Consensus 80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~ 128 (319)
T PTZ00117 80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCM 128 (319)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHH
Confidence 332 21 12235666665 567677779998433
No 125
>PLN02527 aspartate carbamoyltransferase
Probab=92.71 E-value=2.9 Score=45.94 Aligned_cols=100 Identities=13% Similarity=0.198 Sum_probs=65.9
Q ss_pred CCCcEEe--cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhh---HHHHHHHHHc-CCCCccEEEEcCCccccC
Q psy14495 161 MKIPVFH--DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAA---LACLDLIIDL-GFPLQNIFVTDLAGVLYK 234 (766)
Q Consensus 161 ~~~~~fn--DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag---~gia~~l~~~-g~~~~~i~~~D~~Glv~~ 234 (766)
..+||.| |+.+..-.=+||=++.-.+..| ++++.||+++|.+.=+ -..+..+... |+. ++++-.+|+-
T Consensus 117 ~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~---v~~~~P~~~~-- 190 (306)
T PLN02527 117 AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVK---IYFVAPDVVK-- 190 (306)
T ss_pred CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCE---EEEECCCccC--
Confidence 4699999 5555666667788777766666 5999999999998432 2223333333 664 8888887761
Q ss_pred CCCCCCcHHHHHhccccC-----CCCHHHHhccCcEEEecCC
Q psy14495 235 GRSELMDSNKARFIKDTT-----ARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 235 ~r~~~l~~~k~~~a~~~~-----~~~L~e~i~~~~vliG~S~ 271 (766)
+++.-..++++.. ..++.|+++++||+.-.+.
T Consensus 191 -----~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 191 -----MKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred -----CCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence 2232233443321 3689999999999987653
No 126
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.58 E-value=1.3 Score=48.25 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=95.0
Q ss_pred cCCCccccCCCCC-CHHHHHHHHHHhC--CCccc--cccccCCCCchHHHHHHHhhcCCCcEEecCCch----------h
Q psy14495 109 AGIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INLEDIKAPECFYIEKKLRNHMKIPVFHDDQHG----------T 173 (766)
Q Consensus 109 ~gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~ED~~~~~af~il~~~~~~~~~~~fnDD~qG----------T 173 (766)
-||++-.+.+..+ .-++|++.++.+- |+.=+ +|+==.+.-+..++++.....-++=.||....| -
T Consensus 59 ~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~ 138 (295)
T PRK14174 59 IGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCF 138 (295)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCc
Confidence 3677655555543 5677888887773 44322 333212223334444433222233344433222 2
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHH----cCCCCccEEEEcCCccccCCCCCCCcHHHHHhc
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIID----LGFPLQNIFVTDLAGVLYKGRSELMDSNKARFI 248 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~----~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a 248 (766)
.-+|-.|++.=|+..+.+++..++||+|.+. .|.-+|.||.+ .|. .+.++.++.
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~a---tVt~~hs~t------------------ 197 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNC---TVTICHSAT------------------ 197 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCC---EEEEEeCCc------------------
Confidence 3457778899999999999999999999764 68888999886 343 477776631
Q ss_pred cccCCCCHHHHhccCcEEEecCC-CCCCCHHHHH
Q psy14495 249 KDTTARTLSDIIPNADIFLGLSV-SGVLKKEMVL 281 (766)
Q Consensus 249 ~~~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~ 281 (766)
.+|.+.++++|++|+.-+ ++.|+++|++
T Consensus 198 -----~~l~~~~~~ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 198 -----KDIPSYTRQADILIAAIGKARFITADMVK 226 (295)
T ss_pred -----hhHHHHHHhCCEEEEecCccCccCHHHcC
Confidence 238889999999999987 8999999984
No 127
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=92.53 E-value=0.44 Score=51.97 Aligned_cols=147 Identities=20% Similarity=0.201 Sum_probs=94.3
Q ss_pred CCCccccCCCC-CCHHHHHHHHHHhC--CCccc--cccccCCCCchHHHHHHHhhcCCCcEEecC----------CchhH
Q psy14495 110 GIDVFDLEINE-TDPDKLCDIIFSLE--PTFGG--INLEDIKAPECFYIEKKLRNHMKIPVFHDD----------QHGTA 174 (766)
Q Consensus 110 gi~~l~v~~~~-~~~~~~v~~v~~~~--p~~g~--i~~ED~~~~~af~il~~~~~~~~~~~fnDD----------~qGTa 174 (766)
||++..+.+.. ...+++++.+..+- |..-+ +|+==.+.-+-.++++.....-++=.||.. ..+-.
T Consensus 68 Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~ 147 (299)
T PLN02516 68 GIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFL 147 (299)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCC
Confidence 67765555543 35677888877773 44322 332211111122222222111111122211 12334
Q ss_pred HHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCC
Q psy14495 175 IIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTA 253 (766)
Q Consensus 175 ~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~ 253 (766)
-+|-+|++.=|+..|.+++.+++||+|-+ ..|.-+|.||.+.|.+ +++|+|+ .
T Consensus 148 PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~AT---Vtvchs~-----------------------T 201 (299)
T PLN02516 148 PCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADAT---VTVVHSR-----------------------T 201 (299)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE---EEEeCCC-----------------------C
Confidence 55778899999999999999999999976 4688899999998876 8888874 1
Q ss_pred CCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 254 RTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 254 ~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-.-+ ++.++.||++.
T Consensus 202 ~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~ 231 (299)
T PLN02516 202 PDPESIVREADIVIAAAGQAMMIKGDWIKP 231 (299)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccCHHHcCC
Confidence 237888999999987766 89999999875
No 128
>PRK06487 glycerate dehydrogenase; Provisional
Probab=92.48 E-value=1.5 Score=48.31 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=84.2
Q ss_pred CCcEEecCC---chhHHHHHHHHHHHHhHh------------------------CCcCCCceEEEECcchhhHHHHHHHH
Q psy14495 162 KIPVFHDDQ---HGTAIIVGSAILNGLKLV------------------------KKKMKDCKLVVSGAGAAALACLDLII 214 (766)
Q Consensus 162 ~~~~fnDD~---qGTa~v~lA~ll~al~~~------------------------~~~l~d~~iv~~GaG~ag~gia~~l~ 214 (766)
+|++.|--- +.+|=-+++.+|+..|.. +..|.++++.|+|.|..|-.+|+.+.
T Consensus 89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~ 168 (317)
T PRK06487 89 GITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168 (317)
T ss_pred CCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHh
Confidence 688887422 345666777777766532 23588999999999999999999999
Q ss_pred HcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEec---C--CCCCCCHHHHHhhccCcEE
Q psy14495 215 DLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGL---S--VSGVLKKEMVLQMAKNPII 289 (766)
Q Consensus 215 ~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~---S--~~g~ft~evv~~M~~~PiI 289 (766)
..|+. ++.+|+.+ +.. . ....+|.|+++.+|+++=. + +.|.|+++.+..|.+..++
T Consensus 169 ~fgm~---V~~~~~~~-----~~~---~--------~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~l 229 (317)
T PRK06487 169 AFGMR---VLIGQLPG-----RPA---R--------PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALL 229 (317)
T ss_pred hCCCE---EEEECCCC-----Ccc---c--------ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEE
Confidence 99986 77778742 110 0 1123799999999987522 2 2689999999999999888
Q ss_pred EeccC
Q psy14495 290 LALAN 294 (766)
Q Consensus 290 faLsN 294 (766)
.-.|.
T Consensus 230 IN~aR 234 (317)
T PRK06487 230 INTAR 234 (317)
T ss_pred EECCC
Confidence 86664
No 129
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=92.46 E-value=0.77 Score=50.69 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=66.1
Q ss_pred CCceEEEECcchhhHHHHHHHHH-cCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc-----cCCCCHHHHhccCcEE
Q psy14495 193 KDCKLVVSGAGAAALACLDLIID-LGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD-----TTARTLSDIIPNADIF 266 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~-~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~-----~~~~~L~e~i~~~~vl 266 (766)
...+++++|+|..|-..++.|.. .+++ +++++++. ..| ...+...+.+. ....+++++++.+|++
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~--~v~V~~R~----~~~---a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiV 198 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIR--SARIWARD----SAK---AEALALQLSSLLGIDVTAATDPRAAMSGADII 198 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCcc--EEEEECCC----HHH---HHHHHHHHHhhcCceEEEeCCHHHHhccCCEE
Confidence 34689999999999999999874 5655 89988872 212 22333333221 1236799999999999
Q ss_pred EecCC--CCCCCHHHHHhhccCcEEEeccCCC--C-ccCHhhH
Q psy14495 267 LGLSV--SGVLKKEMVLQMAKNPIILALANPL--P-EILPEDI 304 (766)
Q Consensus 267 iG~S~--~g~ft~evv~~M~~~PiIfaLsNPt--~-E~~pe~a 304 (766)
+-+.. ...|+.++++. .-.|.++.-.+ + |+.|+-.
T Consensus 199 vtaT~s~~p~i~~~~l~~---g~~i~~vg~~~p~~rEld~~~l 238 (326)
T TIGR02992 199 VTTTPSETPILHAEWLEP---GQHVTAMGSDAEHKNEIDPAVI 238 (326)
T ss_pred EEecCCCCcEecHHHcCC---CcEEEeeCCCCCCceecCHHHH
Confidence 97753 44688777654 33555555433 3 8888753
No 130
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.38 E-value=1.2 Score=52.35 Aligned_cols=145 Identities=12% Similarity=0.078 Sum_probs=95.5
Q ss_pred CCccccccccCCCCchHHHHHHHhhcCCCcEEecCC---chhHHHHHHHHHHHHhH------------------hCCcCC
Q psy14495 135 PTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQ---HGTAIIVGSAILNGLKL------------------VKKKMK 193 (766)
Q Consensus 135 p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~---qGTa~v~lA~ll~al~~------------------~~~~l~ 193 (766)
|+.-.|+.--.+..|- . ++..++ .+|++.|-.- +-+|=-+++-+|+..|. .|..|.
T Consensus 63 ~~Lk~I~~~~~G~d~i-d-~~~~~~-~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~ 139 (526)
T PRK13581 63 KNLKVIGRAGVGVDNV-D-VPAATR-RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELY 139 (526)
T ss_pred CCCeEEEECCcccccc-c-HHHHHH-CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccC
Confidence 5544454444443331 1 122233 3688888532 23555677777777764 245688
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEec-C--
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGL-S-- 270 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~-S-- 270 (766)
++++.|+|.|..|..+|+.+...|+. ++.+|+.. .+ ...+ .+ .....+|.|+++.+|+++=. .
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~---V~~~d~~~----~~----~~~~-~~--g~~~~~l~ell~~aDiV~l~lP~t 205 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMK---VIAYDPYI----SP----ERAA-QL--GVELVSLDELLARADFITLHTPLT 205 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE---EEEECCCC----Ch----hHHH-hc--CCEEEcHHHHHhhCCEEEEccCCC
Confidence 99999999999999999999999986 89888732 11 0111 11 11122799999999876522 2
Q ss_pred --CCCCCCHHHHHhhccCcEEEeccCCC
Q psy14495 271 --VSGVLKKEMVLQMAKNPIILALANPL 296 (766)
Q Consensus 271 --~~g~ft~evv~~M~~~PiIfaLsNPt 296 (766)
+.+.|+++.+..|.+..++.-.|.-.
T Consensus 206 ~~t~~li~~~~l~~mk~ga~lIN~aRG~ 233 (526)
T PRK13581 206 PETRGLIGAEELAKMKPGVRIINCARGG 233 (526)
T ss_pred hHhhcCcCHHHHhcCCCCeEEEECCCCc
Confidence 25789999999999999988777643
No 131
>PRK07680 late competence protein ComER; Validated
Probab=92.32 E-value=0.26 Score=52.69 Aligned_cols=94 Identities=14% Similarity=0.300 Sum_probs=61.4
Q ss_pred eEEEECcchhhHHHHHHHHHcC-CCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLG-FPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSGV 274 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g-~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g~ 274 (766)
+|.|+|+|..|..++..|.+.| +..++++++|++- +........|..-.-..+..++++++|++| ++.+..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------~~~~~~~~~~~g~~~~~~~~~~~~~aDiVi-lav~p~ 73 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------AKAYHIKERYPGIHVAKTIEEVISQSDLIF-ICVKPL 73 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------HHHHHHHHHcCCeEEECCHHHHHHhCCEEE-EecCHH
Confidence 6999999999999999999988 4555788887731 112222222211111246778888898765 333333
Q ss_pred CCHHHHHhhc----cCcEEEeccCCCC
Q psy14495 275 LKKEMVLQMA----KNPIILALANPLP 297 (766)
Q Consensus 275 ft~evv~~M~----~~PiIfaLsNPt~ 297 (766)
..+++++.+. ++.+|..++|+.+
T Consensus 74 ~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 74 DIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 4567777664 4678999998763
No 132
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.26 E-value=0.2 Score=56.40 Aligned_cols=38 Identities=13% Similarity=0.298 Sum_probs=35.1
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+|++.||+++|+|..|..++..|...|+. +|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg--~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVG--TLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCC
Confidence 368889999999999999999999999997 89999986
No 133
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.19 E-value=1.4 Score=47.72 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=97.6
Q ss_pred cCCCccccCCCCC-CHHHHHHHHHHhC--CCccc--cccccCCCCchHHHHHHHhhcCCCcEEecCC--------chhHH
Q psy14495 109 AGIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INLEDIKAPECFYIEKKLRNHMKIPVFHDDQ--------HGTAI 175 (766)
Q Consensus 109 ~gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~ED~~~~~af~il~~~~~~~~~~~fnDD~--------qGTa~ 175 (766)
-||++-.+.+..+ .-+||++.+..+- |+.-+ +|+==.+.-+..++++.....-++=.||..- .+-.-
T Consensus 59 ~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~~~~~~P 138 (284)
T PRK14170 59 AGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIGKDSFVP 138 (284)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCCCCCCCC
Confidence 3677655555543 4677888887764 44322 3432111122233333332111233444322 22345
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTAR 254 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~ 254 (766)
+|-+|++.=|+..|.+++..++|++|-+ ..|--+|.||.+.|.+ +++|+|+- .
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at---Vtichs~T-----------------------~ 192 (284)
T PRK14170 139 CTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENAT---VTIAHSRT-----------------------K 192 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE---EEEeCCCC-----------------------C
Confidence 6788899999999999999999999976 4688899999988866 88887731 1
Q ss_pred CHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 255 TLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 255 ~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
+|.+.++++|++|-.-+ ++.++++|++.
T Consensus 193 ~l~~~~~~ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 193 DLPQVAKEADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred CHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence 37888899999998877 89999999875
No 134
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.11 E-value=0.53 Score=51.11 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=96.3
Q ss_pred CCCccccCCCC-CCHHHHHHHHHHhC--CCc-cc-ccc---ccCCCCchHHHHHHHhhcCCCcEEecC---------Cch
Q psy14495 110 GIDVFDLEINE-TDPDKLCDIIFSLE--PTF-GG-INL---EDIKAPECFYIEKKLRNHMKIPVFHDD---------QHG 172 (766)
Q Consensus 110 gi~~l~v~~~~-~~~~~~v~~v~~~~--p~~-g~-i~~---ED~~~~~af~il~~~~~~~~~~~fnDD---------~qG 172 (766)
||++--+.+.. ...++|++.++.+. |+. |. +|+ +.+.....++-++-.+| +=.||.. -.+
T Consensus 61 Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KD---VDGl~~~N~g~l~~g~~~~ 137 (288)
T PRK14171 61 GIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKD---IDGFHPLNVGYLHSGISQG 137 (288)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccc---cccCCccchhhhhcCCCCC
Confidence 57654444443 24577888887764 444 22 333 23333222222222222 2233322 133
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT 251 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~ 251 (766)
-.-+|-+|++.=|+..+.+++..++|++|-+ ..|--++.||.+.|.+ +++|+|+.
T Consensus 138 ~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~AT---Vtichs~T--------------------- 193 (288)
T PRK14171 138 FIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCS---VTICHSKT--------------------- 193 (288)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE---EEEeCCCC---------------------
Confidence 4567888899999999999999999999976 4788899999988876 88888742
Q ss_pred CCCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 252 TARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 252 ~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
.+|.+.++++|++|-.-+ ++.++++|++.
T Consensus 194 --~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~ 223 (288)
T PRK14171 194 --HNLSSITSKADIVVAAIGSPLKLTAEYFNP 223 (288)
T ss_pred --CCHHHHHhhCCEEEEccCCCCccCHHHcCC
Confidence 237888999999998776 89999999885
No 135
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=92.07 E-value=0.81 Score=50.71 Aligned_cols=119 Identities=21% Similarity=0.225 Sum_probs=89.0
Q ss_pred ecCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHH
Q psy14495 167 HDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKAR 246 (766)
Q Consensus 167 nDD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~ 246 (766)
.|.-+||+--++-|++.| |..=+....+|+.|=|--|-|||..+..+|.+ +++.+- +|.+.-
T Consensus 185 FDNrYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~---ViVtEv------------DPI~Al 246 (420)
T COG0499 185 FDNRYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGAR---VIVTEV------------DPIRAL 246 (420)
T ss_pred cccccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCe---EEEEec------------CchHHH
Confidence 488899999999999765 45557778999999999999999999999976 553332 233222
Q ss_pred hcc--ccCCCCHHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEeccCCCCccCHhh
Q psy14495 247 FIK--DTTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALANPLPEILPED 303 (766)
Q Consensus 247 ~a~--~~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~ 303 (766)
=|. ....-++.||.+.+|+||=+.+ .++++.|..+.|.+.-|+--.--=.-||..+.
T Consensus 247 eA~MdGf~V~~m~~Aa~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~ 306 (420)
T COG0499 247 EAAMDGFRVMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAG 306 (420)
T ss_pred HHhhcCcEEEEhHHhhhcCCEEEEccCCcCccCHHHHHhccCCeEEecccccceeccHHH
Confidence 222 2234569999999999998887 88999999999999988642221134777654
No 136
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=91.97 E-value=2.4 Score=48.05 Aligned_cols=169 Identities=18% Similarity=0.242 Sum_probs=107.0
Q ss_pred HHHHHH-HHHHhCCCcc---ccccccCCCC--chHHHHHHHhhcCCCc---------EEe----cCCchhHHHHHHHHHH
Q psy14495 123 PDKLCD-IIFSLEPTFG---GINLEDIKAP--ECFYIEKKLRNHMKIP---------VFH----DDQHGTAIIVGSAILN 183 (766)
Q Consensus 123 ~~~~v~-~v~~~~p~~g---~i~~ED~~~~--~af~il~~~~~~~~~~---------~fn----DD~qGTa~v~lA~ll~ 183 (766)
.++|.+ +++++++.-| -|-=+|+... .=--+.+.|+.-.+.. +-. +----||-=+.-+.-.
T Consensus 117 ~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~ 196 (411)
T COG0334 117 LERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIRE 196 (411)
T ss_pred HHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceehHHHHHH
Confidence 556665 4677776666 4777888752 1122456665421111 111 1122233222223337
Q ss_pred HHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc-----cC-----C
Q psy14495 184 GLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD-----TT-----A 253 (766)
Q Consensus 184 al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~-----~~-----~ 253 (766)
+++..|.+|+..||.|-|.|..|.-.|+.|.+.|.. =+-+=|++|.||... .|+..+....++ .+ .
T Consensus 197 a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAk--vva~sds~g~i~~~~--Gld~~~l~~~~~~~~~v~~~~ga~~ 272 (411)
T COG0334 197 ALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAK--VVAVSDSKGGIYDED--GLDVEALLELKERRGSVAEYAGAEY 272 (411)
T ss_pred HHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCE--EEEEEcCCCceecCC--CCCHHHHHHHhhhhhhHHhhcCceE
Confidence 788888889999999999999999999999999976 466678899888763 565433332221 11 0
Q ss_pred CCHHHHhc-cCcEEEecCCCCCCCHHHHHhhccCcEEEeccC-CC
Q psy14495 254 RTLSDIIP-NADIFLGLSVSGVLKKEMVLQMAKNPIILALAN-PL 296 (766)
Q Consensus 254 ~~L~e~i~-~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsN-Pt 296 (766)
-+=.|... .+|||+-+...+.+|++-.+...-+ +|.=-+| |+
T Consensus 273 i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak-~V~EgAN~P~ 316 (411)
T COG0334 273 ITNEELLEVDCDILIPCALENVITEDNADQLKAK-IVVEGANGPT 316 (411)
T ss_pred ccccccccccCcEEcccccccccchhhHHHhhhc-EEEeccCCCC
Confidence 11133333 2699999998899999998888867 6666666 75
No 137
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.89 E-value=0.29 Score=55.02 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=36.6
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.++|++.||+++|+|..|..++..|...|+. +|.++|.+=
T Consensus 36 q~~l~~~~VliiG~GglG~~v~~~La~~Gvg--~i~ivD~D~ 75 (370)
T PRK05600 36 QERLHNARVLVIGAGGLGCPAMQSLASAGVG--TITLIDDDT 75 (370)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEeCCE
Confidence 3678999999999999999999999999987 899999973
No 138
>PRK06932 glycerate dehydrogenase; Provisional
Probab=91.86 E-value=2.2 Score=46.98 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=81.1
Q ss_pred CCcEEecC-C--chhHHHHHHHHHHHHhH------------------------hCCcCCCceEEEECcchhhHHHHHHHH
Q psy14495 162 KIPVFHDD-Q--HGTAIIVGSAILNGLKL------------------------VKKKMKDCKLVVSGAGAAALACLDLII 214 (766)
Q Consensus 162 ~~~~fnDD-~--qGTa~v~lA~ll~al~~------------------------~~~~l~d~~iv~~GaG~ag~gia~~l~ 214 (766)
+|++.|-. . +.+|=-+++.+|+..|. .+..|.+.++.|+|-|..|-.+|+++.
T Consensus 88 gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~ 167 (314)
T PRK06932 88 GIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQ 167 (314)
T ss_pred CCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHh
Confidence 56666632 1 34455566666665542 124688999999999999999999999
Q ss_pred HcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEec---C--CCCCCCHHHHHhhccCcEE
Q psy14495 215 DLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGL---S--VSGVLKKEMVLQMAKNPII 289 (766)
Q Consensus 215 ~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~---S--~~g~ft~evv~~M~~~PiI 289 (766)
..|+. ++.+|+..- .... ....+|.|+++.+|+++=. + +.|.|+++.+..|.+..++
T Consensus 168 ~fg~~---V~~~~~~~~------~~~~---------~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~l 229 (314)
T PRK06932 168 ALGMK---VLYAEHKGA------SVCR---------EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFL 229 (314)
T ss_pred cCCCE---EEEECCCcc------cccc---------cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEE
Confidence 99986 776665310 0000 1134799999999987622 2 2589999999999999998
Q ss_pred EeccC
Q psy14495 290 LALAN 294 (766)
Q Consensus 290 faLsN 294 (766)
.-.|.
T Consensus 230 IN~aR 234 (314)
T PRK06932 230 INTGR 234 (314)
T ss_pred EECCC
Confidence 87665
No 139
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.86 E-value=1.7 Score=47.15 Aligned_cols=150 Identities=15% Similarity=0.218 Sum_probs=94.5
Q ss_pred CCCccccCCCCC-CHHHHHHHHHHhC--CCccc--cccccCCCCchHHHHHHHhhcCCCcEEe---------cCCchhHH
Q psy14495 110 GIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INLEDIKAPECFYIEKKLRNHMKIPVFH---------DDQHGTAI 175 (766)
Q Consensus 110 gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~ED~~~~~af~il~~~~~~~~~~~fn---------DD~qGTa~ 175 (766)
||++-.+.+..+ .-+++.+.+..+. |+.-+ +|+==.+.-+-.++++.....-++=.|| .|..+-.-
T Consensus 55 Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~~~~~~P 134 (287)
T PRK14181 55 GMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGETDGFIP 134 (287)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCCCCCCCC
Confidence 577655555433 4667777777763 44322 3322111112223333322111222333 22223455
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCC-ccEEEEcCCccccCCCCCCCcHHHHHhccccCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPL-QNIFVTDLAGVLYKGRSELMDSNKARFIKDTTA 253 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~-~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~ 253 (766)
+|-.|++.=|+..|.+++.+++|++|-+ ..|.-+|.||.+.|... ..+++|.|+.
T Consensus 135 cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T----------------------- 191 (287)
T PRK14181 135 CTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS----------------------- 191 (287)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC-----------------------
Confidence 6888899999999999999999999976 46888999999874210 1377776631
Q ss_pred CCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 254 RTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 254 ~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-.-+ ++.+++||++.
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 238888999999998776 89999999875
No 140
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.85 E-value=0.61 Score=50.77 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=94.8
Q ss_pred CCCccccCCCCC-CHHHHHHHHHHhC--CCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecCCc----------
Q psy14495 110 GIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDDQH---------- 171 (766)
Q Consensus 110 gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD~q---------- 171 (766)
||++-.+.+..+ .-++|++.+..+. |+.=+ +|+ +++.. .++++.....-++=.||....
T Consensus 61 Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~---~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~ 137 (294)
T PRK14187 61 GLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDK---NLIINTIDPEKDVDGFHNENVGRLFTGQKKN 137 (294)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH---HHHHhccCcccCcccCChhhHHHHhCCCCCC
Confidence 576555544432 4567888887763 44322 332 23322 223322221112223332211
Q ss_pred hhHHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc
Q psy14495 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD 250 (766)
Q Consensus 172 GTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~ 250 (766)
+-.-+|-.|++.-|+..+.+++..++|++|.+ ..|--++.||.+.|.+ +++|+|+-
T Consensus 138 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT---Vt~chs~T-------------------- 194 (294)
T PRK14187 138 CLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCT---VTTVHSAT-------------------- 194 (294)
T ss_pred CccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCE---EEEeCCCC--------------------
Confidence 33456888899999999999999999999976 4688899999998866 88888741
Q ss_pred cCCCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 251 TTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 251 ~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-.-+ ++.++++|++.
T Consensus 195 ---~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 195 ---RDLADYCSKADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred ---CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 237788899999997776 89999999875
No 141
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=91.76 E-value=0.34 Score=52.55 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=46.5
Q ss_pred CcEEecCCchhHHHHHHHHHHHHhHhC--CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 163 IPVFHDDQHGTAIIVGSAILNGLKLVK--KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 163 ~~~fnDD~qGTa~v~lA~ll~al~~~~--~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
+--+|.|- -|+..+|+..+ .+.+.++++++|||-|+.+++-.|.++|++ +|+++++
T Consensus 101 l~G~NTD~--------~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~--~i~V~NR 158 (283)
T COG0169 101 LRGYNTDG--------IGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAK--RITVVNR 158 (283)
T ss_pred EEEEcCCH--------HHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCC--EEEEEeC
Confidence 45666665 35677888766 566789999999999999999999999987 8999998
No 142
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.75 E-value=2 Score=46.57 Aligned_cols=145 Identities=12% Similarity=0.185 Sum_probs=97.7
Q ss_pred cCCCccccCCCCC-CHHHHHHHHHHhC--CCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecCC--------ch
Q psy14495 109 AGIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDDQ--------HG 172 (766)
Q Consensus 109 ~gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD~--------qG 172 (766)
-||++-.+.+..+ .-+||++.++.+- |+.=+ +|+ +.+... ++++...-.-++=.||.-- .+
T Consensus 58 ~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~---~i~~~I~p~KDVDGl~~~N~g~l~~~~~~ 134 (282)
T PRK14169 58 IGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQ---AVIDAIDPDKDVDGFSPVSVGRLWANEPT 134 (282)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH---HHHhhcCcccCcccCChhhhHHHhcCCCC
Confidence 3577655555543 4667888887763 44322 343 333332 3333322111222333321 23
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT 251 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~ 251 (766)
-.-+|-.|++.=|+..+.+++.+++|++|-+ ..|--+|.||...|.+ +++|.|+.
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~at---Vtichs~T--------------------- 190 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDAT---VTIAHSKT--------------------- 190 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE---EEEECCCC---------------------
Confidence 3466888899999999999999999999975 4788899999988876 88787631
Q ss_pred CCCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 252 TARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 252 ~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
.+|.+.++++|++|-.-+ ++.|+.||++.
T Consensus 191 --~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~ 220 (282)
T PRK14169 191 --RNLKQLTKEADILVVAVGVPHFIGADAVKP 220 (282)
T ss_pred --CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 138888999999997776 89999999875
No 143
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.73 E-value=1.5 Score=50.15 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=108.2
Q ss_pred HHHhhhcCCCccccCCCCCCHHHHHHHHHHhCCCccccccccCCCCchHHHHHHHhhcCCCcEEecCC---chhHHHHHH
Q psy14495 103 VLFKKFAGIDVFDLEINETDPDKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQ---HGTAIIVGS 179 (766)
Q Consensus 103 ~ly~~~~gi~~l~v~~~~~~~~~~v~~v~~~~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~---qGTa~v~lA 179 (766)
.+...+.+.|++=+.....-.+++++. .|+.-.|+.--.+..| .. ++..++ .+|+|+|--- +.+|=-+++
T Consensus 46 ~~~~~~~~~d~l~~~~~~~~~~~~l~~----~~~Lk~I~~~~~G~d~-id-~~~~~~-~gI~V~n~pg~~~~aVAE~~i~ 118 (409)
T PRK11790 46 ELIEAIKDAHFIGIRSRTQLTEEVLAA----AEKLVAIGCFCIGTNQ-VD-LDAAAK-RGIPVFNAPFSNTRSVAELVIG 118 (409)
T ss_pred HHHHHcCCCCEEEEeCCCCCCHHHHhh----CCCCeEEEECceeccc-cc-HHHHHh-CCCEEEeCCCCChHHHHHHHHH
Confidence 345556666654222122223444443 3444344444444333 22 223344 3799999532 335556788
Q ss_pred HHHHHHhH------------------hCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCc
Q psy14495 180 AILNGLKL------------------VKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMD 241 (766)
Q Consensus 180 ~ll~al~~------------------~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~ 241 (766)
.+|+.+|. .+..|.+.++.|+|-|..|-.+|+.+...|+. ++.+|+.. .. ...
T Consensus 119 l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~---V~~~d~~~----~~--~~~ 189 (409)
T PRK11790 119 EIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMR---VYFYDIED----KL--PLG 189 (409)
T ss_pred HHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEECCCc----cc--ccC
Confidence 88888764 24568999999999999999999999999986 88888631 00 000
Q ss_pred HHHHHhccccCCCCHHHHhccCcEEEe---cC--CCCCCCHHHHHhhccCcEEEeccCC
Q psy14495 242 SNKARFIKDTTARTLSDIIPNADIFLG---LS--VSGVLKKEMVLQMAKNPIILALANP 295 (766)
Q Consensus 242 ~~k~~~a~~~~~~~L~e~i~~~~vliG---~S--~~g~ft~evv~~M~~~PiIfaLsNP 295 (766)
.+ ....+|.|+++.+|+++= ++ +.+.|+++.+..|.+..++.-.|.-
T Consensus 190 -----~~--~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG 241 (409)
T PRK11790 190 -----NA--RQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRG 241 (409)
T ss_pred -----Cc--eecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCC
Confidence 01 113479999999987642 22 2579999999999999888877753
No 144
>PRK08223 hypothetical protein; Validated
Probab=91.67 E-value=0.44 Score=51.74 Aligned_cols=40 Identities=15% Similarity=0.382 Sum_probs=36.4
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
..+|++.||+|+|+|.-|.-++..|..+|+. +|.++|.+=
T Consensus 22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG--~i~lvD~D~ 61 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIG--KFTIADFDV 61 (287)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHhCCC--eEEEEeCCC
Confidence 3568999999999999999999999999998 899999873
No 145
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.66 E-value=0.43 Score=47.88 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=30.1
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
||+++|+|..|..++..|...|+. +|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg--~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVG--NLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCC
Confidence 689999999999999999999997 89999997
No 146
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=91.57 E-value=4.1 Score=44.62 Aligned_cols=135 Identities=15% Similarity=0.215 Sum_probs=82.2
Q ss_pred HHhhcCCCcEEe--cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcc---hhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 156 KLRNHMKIPVFH--DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAG---AAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 156 ~~~~~~~~~~fn--DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG---~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
++.+...+||.| |+.+-.-.=+||=++.-.+..| ++++.||+++|-| ...-..+.++...|+. +.++-.+|
T Consensus 111 ~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~---v~~~~P~~ 186 (301)
T TIGR00670 111 LAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVE---VYLISPEE 186 (301)
T ss_pred HHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCE---EEEECCcc
Confidence 333334699999 4444445556777776655555 6999999999986 3333445555667875 88888877
Q ss_pred cccCCCCCCCcHHHHHhcccc-----CCCCHHHHhccCcEEEecCCC----C------------CCCHHHHHhhccCcEE
Q psy14495 231 VLYKGRSELMDSNKARFIKDT-----TARTLSDIIPNADIFLGLSVS----G------------VLKKEMVLQMAKNPII 289 (766)
Q Consensus 231 lv~~~r~~~l~~~k~~~a~~~-----~~~~L~e~i~~~~vliG~S~~----g------------~ft~evv~~M~~~PiI 289 (766)
+- +++.-...++.. -..++.++++++||+.-.+.. + -+|+|.++...++.||
T Consensus 187 ~~-------~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~ 259 (301)
T TIGR00670 187 LR-------MPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVII 259 (301)
T ss_pred cc-------CCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEE
Confidence 61 222222233321 236899999999999887641 1 2455555554455555
Q ss_pred E-eccCCCCccCHh
Q psy14495 290 L-ALANPLPEILPE 302 (766)
Q Consensus 290 f-aLsNPt~E~~pe 302 (766)
+ ||- ---|++.+
T Consensus 260 mHclP-Rg~Ev~~~ 272 (301)
T TIGR00670 260 MHPLP-RVDEIDPS 272 (301)
T ss_pred ECCCC-CCcccCHH
Confidence 5 333 11366654
No 147
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.42 E-value=0.29 Score=55.51 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=35.5
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
++|++.||+++|+|.-|.-+|..|...|+. +|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg--~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVG--TLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCC
Confidence 568899999999999999999999999998 89999986
No 148
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.39 E-value=0.74 Score=50.22 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=55.7
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSG 273 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g 273 (766)
..||.|+|+|..|.++|..|.+.|.. ++++|+.. ..++.++++++|++| ++.|.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~---V~~~~r~~----------------------~~~~~~~~~~advvi-~~vp~ 57 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHR---VRVWSRRS----------------------GLSLAAVLADADVIV-SAVSM 57 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCE---EEEEeCCC----------------------CCCHHHHHhcCCEEE-EECCh
Confidence 45899999999999999999999954 77777631 035788888999876 44443
Q ss_pred CCCHHHHHhhc-----cCcEEEeccC
Q psy14495 274 VLKKEMVLQMA-----KNPIILALAN 294 (766)
Q Consensus 274 ~ft~evv~~M~-----~~PiIfaLsN 294 (766)
...+++++.+. +.-+|+-+|+
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 46667766654 3457777887
No 149
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.29 E-value=0.69 Score=50.11 Aligned_cols=145 Identities=16% Similarity=0.231 Sum_probs=94.4
Q ss_pred cCCCccccCCCC-CCHHHHHHHHHHhC--CCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecCCc--------h
Q psy14495 109 AGIDVFDLEINE-TDPDKLCDIIFSLE--PTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDDQH--------G 172 (766)
Q Consensus 109 ~gi~~l~v~~~~-~~~~~~v~~v~~~~--p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD~q--------G 172 (766)
-||++-.+.+.. ...++|++.+..+- |+.-+ +|+ +.+... ++++.....-++=.||..-. +
T Consensus 60 ~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~---~i~~~I~p~KDVDGl~~~n~g~l~~~~~~ 136 (284)
T PRK14193 60 VGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDEN---AVLERIDPAKDADGLHPTNLGRLVLNEPA 136 (284)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH---HHHhcCCcccCccCCChhhhhHHhCCCCC
Confidence 357755555554 34677888887773 43322 232 222222 22222211112223333222 2
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHH--cCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIID--LGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK 249 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~--~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~ 249 (766)
-.-+|-.|++.-|+..+.+++.+++|++|.+ ..|.-+|.||.+ .|.+ +++|.|+
T Consensus 137 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~at---Vtvchs~-------------------- 193 (284)
T PRK14193 137 PLPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENAT---VTLCHTG-------------------- 193 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCE---EEEeCCC--------------------
Confidence 2356788899999999999999999999975 578889999987 5665 7888773
Q ss_pred ccCCCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 250 DTTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 250 ~~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
..+|.+.++++|++|-+.+ ++.+++||++.
T Consensus 194 ---T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~ 224 (284)
T PRK14193 194 ---TRDLAAHTRRADIIVAAAGVAHLVTADMVKP 224 (284)
T ss_pred ---CCCHHHHHHhCCEEEEecCCcCccCHHHcCC
Confidence 1248888999999998877 89999999875
No 150
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=91.21 E-value=2.4 Score=50.03 Aligned_cols=174 Identities=14% Similarity=0.123 Sum_probs=106.4
Q ss_pred HHHhhhcCCCccccCCCCCCHHHHHHHHHHhCCCccccccccCCCCchHHHHHHHhhcCCCcEEecCC---chhHHHHHH
Q psy14495 103 VLFKKFAGIDVFDLEINETDPDKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQ---HGTAIIVGS 179 (766)
Q Consensus 103 ~ly~~~~gi~~l~v~~~~~~~~~~v~~v~~~~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~---qGTa~v~lA 179 (766)
.+...+.+.|.+=+.....-..++++. .|+.-.|+.--.+..| .. ++..++ .+|++.|--- +.+|=-+++
T Consensus 33 ~~~~~~~~~d~li~~~~~~~~~~~l~~----~~~Lk~I~~~~~G~d~-id-~~~~~~-~gI~V~n~pg~~~~~vAE~~~~ 105 (525)
T TIGR01327 33 ELLEIIPDYDALIVRSATKVTEEVIAA----APKLKVIGRAGVGVDN-ID-IEAATA-RGILVVNAPTGNTISAAEHALA 105 (525)
T ss_pred HHHHHhcCCCEEEEcCCCCcCHHHHhh----CCCceEEEECCcccch-hc-HHHHHH-CCCEEEeCCCcChHHHHHHHHH
Confidence 344555565543221112223344443 2555445544444433 11 222333 3788888532 345556777
Q ss_pred HHHHHHhH------------------hCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCc
Q psy14495 180 AILNGLKL------------------VKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMD 241 (766)
Q Consensus 180 ~ll~al~~------------------~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~ 241 (766)
.+|+..|. .|..|.+.++.|+|-|..|-.+|+.+...|+. ++.+|+.. . . .
T Consensus 106 l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~---V~~~d~~~--~--~----~ 174 (525)
T TIGR01327 106 MLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMK---VLAYDPYI--S--P----E 174 (525)
T ss_pred HHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCE---EEEECCCC--C--h----h
Confidence 77776653 24568999999999999999999999999985 88888731 1 1 0
Q ss_pred HHHHHhccccCCCCHHHHhccCcEEE-ecC----CCCCCCHHHHHhhccCcEEEeccCCC
Q psy14495 242 SNKARFIKDTTARTLSDIIPNADIFL-GLS----VSGVLKKEMVLQMAKNPIILALANPL 296 (766)
Q Consensus 242 ~~k~~~a~~~~~~~L~e~i~~~~vli-G~S----~~g~ft~evv~~M~~~PiIfaLsNPt 296 (766)
..+ .+. -....+|.|+++.+|+++ -+. +.+.|+++.+..|.+..++.-.|.-.
T Consensus 175 ~~~-~~g-~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 232 (525)
T TIGR01327 175 RAE-QLG-VELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGG 232 (525)
T ss_pred HHH-hcC-CEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCc
Confidence 111 110 011247999999998764 222 25789999999999999888777643
No 151
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.03 E-value=0.74 Score=50.21 Aligned_cols=88 Identities=14% Similarity=0.122 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCC-CccEEEEcCCccccCCCCCCCcHHHHHhcc
Q psy14495 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFP-LQNIFVTDLAGVLYKGRSELMDSNKARFIK 249 (766)
Q Consensus 172 GTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~-~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~ 249 (766)
+-.-+|-.|++.=|+..|.+++..++|++|.+ ..|.-+|.||.+.|.. ...+++|.|+-
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------------- 199 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------------- 199 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC-------------------
Confidence 33456788889999999999999999999975 4688889999987432 12477777641
Q ss_pred ccCCCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 250 DTTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 250 ~~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-+.+ ++.+++||++.
T Consensus 200 ----~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~ 229 (297)
T PRK14168 200 ----KNLARHCQRADILIVAAGVPNLVKPEWIKP 229 (297)
T ss_pred ----cCHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence 248888999999998877 89999999875
No 152
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.03 E-value=0.26 Score=46.95 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=32.8
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl 231 (766)
++.||+++|+|+-|.-++..|...|+. +|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVG--KITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTS--EEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCC--ceeecCCcce
Confidence 478999999999999999999999997 8999999743
No 153
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.03 E-value=2 Score=46.62 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=93.9
Q ss_pred CCCccccCCCCC-CHHHHHHHHHHhC--CCccc--cccccCCCCchHHHHHHHhhcCCCcEEecCCc--------h-hHH
Q psy14495 110 GIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INLEDIKAPECFYIEKKLRNHMKIPVFHDDQH--------G-TAI 175 (766)
Q Consensus 110 gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~ED~~~~~af~il~~~~~~~~~~~fnDD~q--------G-Ta~ 175 (766)
||++-.+.+..+ ..+++++.++.+- |+.-+ +|+==.+.-+..++++.....-++=.||..-. + -.-
T Consensus 59 Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~P 138 (282)
T PRK14182 59 GITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSIGIAGVPRP 138 (282)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHhCCCCCCCCC
Confidence 577555544433 5677888887663 44422 33321111122333333221111222222111 1 245
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTAR 254 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~ 254 (766)
+|-.|++.=|+..+.+++..++|++|-+. -|.-++.||.+.|.+ +++|+|+ | .
T Consensus 139 cTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~At---Vtichs~---T--------------------~ 192 (282)
T PRK14182 139 CTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHAT---VTIAHSR---T--------------------A 192 (282)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE---EEEeCCC---C--------------------C
Confidence 57888999999999999999999999764 688889999988865 8887763 1 1
Q ss_pred CHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 255 TLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 255 ~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
+|.+.++++|++|-.-+ ++.+++||++.
T Consensus 193 nl~~~~~~ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 193 DLAGEVGRADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred CHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence 37788899999998877 89999999875
No 154
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.92 E-value=0.35 Score=52.61 Aligned_cols=97 Identities=15% Similarity=0.311 Sum_probs=59.3
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc-----cc-----CCCCHHHHhccCc
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK-----DT-----TARTLSDIIPNAD 264 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~-----~~-----~~~~L~e~i~~~~ 264 (766)
.||.|+|||..|.++|..+...|+. .++|+|.+ +++ +......+.+ .. ...+. ++++++|
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~--ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aD 72 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG--DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSD 72 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe--EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCC
Confidence 4899999999999999999988875 69999982 211 1111111111 01 12345 5689999
Q ss_pred EEE---ecCC-CC-----------CCCHHHHHhhc---cCcEEEeccCCCCccCH
Q psy14495 265 IFL---GLSV-SG-----------VLKKEMVLQMA---KNPIILALANPLPEILP 301 (766)
Q Consensus 265 vli---G~S~-~g-----------~ft~evv~~M~---~~PiIfaLsNPt~E~~p 301 (766)
++| |+.. +| ..-+++.+.|. ++.+++-.|||..-++.
T Consensus 73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~ 127 (307)
T PRK06223 73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTY 127 (307)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH
Confidence 876 2222 22 11234444444 56778888999764444
No 155
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.90 E-value=2.8 Score=45.67 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=94.3
Q ss_pred CCCccccCCCCC-CHHHHHHHHHHhC--CCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecCCch--------h
Q psy14495 110 GIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDDQHG--------T 173 (766)
Q Consensus 110 gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD~qG--------T 173 (766)
||++--+.+..+ .-++|++.++.+- |+.=+ +|+ +.+. ..++++.....-++=.||..-.| -
T Consensus 60 Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~---~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~ 136 (293)
T PRK14185 60 GFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHIS---EQKVIEAIDYRKDVDGFHPINVGRMSIGLPCF 136 (293)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCC---HHHHHhccCcccCcCCCCHhhHHHHhCCCCCC
Confidence 577544444433 3577888887773 54322 343 2332 22233322211122233333222 2
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCC-ccEEEEcCCccccCCCCCCCcHHHHHhcccc
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPL-QNIFVTDLAGVLYKGRSELMDSNKARFIKDT 251 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~-~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~ 251 (766)
.-+|-.|++.=|+..+.+++..++|++|-+. .|--+|.||.+.|.+. -.+.+|.|+.
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------------- 195 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------------- 195 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------------------
Confidence 3457888889999999999999999999764 6888899999875321 1377777642
Q ss_pred CCCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 252 TARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 252 ~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-.-+ ++.+++||++.
T Consensus 196 --~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~ 225 (293)
T PRK14185 196 --KNLKKECLEADIIIAALGQPEFVKADMVKE 225 (293)
T ss_pred --CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 248888999999998877 89999999875
No 156
>PLN02688 pyrroline-5-carboxylate reductase
Probab=90.73 E-value=4.3 Score=42.97 Aligned_cols=91 Identities=20% Similarity=0.324 Sum_probs=56.1
Q ss_pred eEEEECcchhhHHHHHHHHHcCC-CCccEEEE-cCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGF-PLQNIFVT-DLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSG 273 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~-~~~~i~~~-D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g 273 (766)
||.|+|.|..|.++++-|.+.|. ..++||++ |+. . +..+..+. + .-....+..|+++++|++| ++.+.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~----~---~~~~~~~~-~-g~~~~~~~~e~~~~aDvVi-l~v~~ 71 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSN----P---ARRDVFQS-L-GVKTAASNTEVVKSSDVII-LAVKP 71 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCC----H---HHHHHHHH-c-CCEEeCChHHHHhcCCEEE-EEECc
Confidence 79999999999999999999885 45578877 542 1 11111111 1 0012356788888888755 33333
Q ss_pred CCCHHHHHhhc----cCcEEEeccCCC
Q psy14495 274 VLKKEMVLQMA----KNPIILALANPL 296 (766)
Q Consensus 274 ~ft~evv~~M~----~~PiIfaLsNPt 296 (766)
...+++++... +..+|..+++..
T Consensus 72 ~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 72 QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 44567765553 445666655544
No 157
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.70 E-value=0.68 Score=50.88 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=60.9
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHH--Hhccc-------cCCCCHHHHhccCcE
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKA--RFIKD-------TTARTLSDIIPNADI 265 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~--~~a~~-------~~~~~L~e~i~~~~v 265 (766)
.||.|+|+|+.|.++|..|.+.|.. ++++|+..= +.+.+..... .|... ....++.|+++.+|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~---V~~~~r~~~----~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVP---VRLWARRPE----FAAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCHH----HHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 4899999999999999999998865 778877311 0001111000 00000 112478899999998
Q ss_pred EEecCCCCCCCHHHHHhhccCcEEEeccCC
Q psy14495 266 FLGLSVSGVLKKEMVLQMAKNPIILALANP 295 (766)
Q Consensus 266 liG~S~~g~ft~evv~~M~~~PiIfaLsNP 295 (766)
+| ++.+....+++++.+.+.-+|+-++|.
T Consensus 78 Vi-~~v~~~~~~~v~~~l~~~~~vi~~~~G 106 (328)
T PRK14618 78 AV-VAVPSKALRETLAGLPRALGYVSCAKG 106 (328)
T ss_pred EE-EECchHHHHHHHHhcCcCCEEEEEeec
Confidence 76 333333468999988877788888996
No 158
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.64 E-value=3.1 Score=45.49 Aligned_cols=151 Identities=17% Similarity=0.215 Sum_probs=95.5
Q ss_pred cCCCccccCCCCC-CHHHHHHHHHHh--CCCccc--cccccCCCCchHHHHHHHhhcCCCcEEecCCch--------hHH
Q psy14495 109 AGIDVFDLEINET-DPDKLCDIIFSL--EPTFGG--INLEDIKAPECFYIEKKLRNHMKIPVFHDDQHG--------TAI 175 (766)
Q Consensus 109 ~gi~~l~v~~~~~-~~~~~v~~v~~~--~p~~g~--i~~ED~~~~~af~il~~~~~~~~~~~fnDD~qG--------Ta~ 175 (766)
-||++--+.+..+ .-++|.+.+..+ .|+.=+ +|+==.+.-+..++++....+-++=.||..-.| -.-
T Consensus 59 ~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~P 138 (297)
T PRK14167 59 VGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAGDARFKP 138 (297)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCCCCCCCC
Confidence 3577544444432 456788887777 354322 333211111333333333221123344433222 234
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCC-ccEEEEcCCccccCCCCCCCcHHHHHhccccCC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPL-QNIFVTDLAGVLYKGRSELMDSNKARFIKDTTA 253 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~-~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~ 253 (766)
+|-.|++.=|+..+.+++..++|++|.+. -|--+|.||.+.|... ..+.+|.|+-
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T----------------------- 195 (297)
T PRK14167 139 CTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT----------------------- 195 (297)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC-----------------------
Confidence 68888999999999999999999999764 6888899998763210 1377777631
Q ss_pred CCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 254 RTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 254 ~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-+-+ ++.++.||++.
T Consensus 196 ~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~ 225 (297)
T PRK14167 196 DDLAAKTRRADIVVAAAGVPELIDGSMLSE 225 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 237888999999998887 99999999885
No 159
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.47 E-value=1.8 Score=47.41 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=69.9
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEe
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLG 268 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG 268 (766)
+..|.+.++.|+|-|..|..+|+++...|+. ++.+|+... .++.. ....+|.|+++.+|+++=
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~afG~~---V~~~~r~~~-----~~~~~---------~~~~~l~ell~~aDiv~~ 179 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAKAFGMN---IYAYTRSYV-----NDGIS---------SIYMEPEDIMKKSDFVLI 179 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHHCCCE---EEEECCCCc-----ccCcc---------cccCCHHHHHhhCCEEEE
Confidence 4579999999999999999999999888986 888887521 11111 012479999999998652
Q ss_pred c-C----CCCCCCHHHHHhhccCcEEEeccCCCC
Q psy14495 269 L-S----VSGVLKKEMVLQMAKNPIILALANPLP 297 (766)
Q Consensus 269 ~-S----~~g~ft~evv~~M~~~PiIfaLsNPt~ 297 (766)
+ . +.+.++++.+..|.+..++.-.|.-..
T Consensus 180 ~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~ 213 (303)
T PRK06436 180 SLPLTDETRGMINSKMLSLFRKGLAIINVARADV 213 (303)
T ss_pred CCCCCchhhcCcCHHHHhcCCCCeEEEECCCccc
Confidence 2 1 246899999999999999998886443
No 160
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.37 E-value=7.5 Score=41.90 Aligned_cols=100 Identities=21% Similarity=0.356 Sum_probs=58.7
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHH-------Hhc----------------ccc
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKA-------RFI----------------KDT 251 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~-------~~a----------------~~~ 251 (766)
.||.|+|+|..|.++|..+...|.. ++++|.+- +.++..+. .+. +-+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~---V~l~d~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 73 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFD---VTIYDISD-------EALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT 73 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCe---EEEEeCCH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE
Confidence 4899999999999999999998864 99999741 11222111 110 001
Q ss_pred CCCCHHHHhccCcEEEecC-CCCCCCHHHHHhhc---cCcEEEeccCCCCccCHhhHhc
Q psy14495 252 TARTLSDIIPNADIFLGLS-VSGVLKKEMVLQMA---KNPIILALANPLPEILPEDIKS 306 (766)
Q Consensus 252 ~~~~L~e~i~~~~vliG~S-~~g~ft~evv~~M~---~~PiIfaLsNPt~E~~pe~a~~ 306 (766)
-..++.++++++|++|=+- ..-.+.+++++... +...|++ ||. +-..+.++.+
T Consensus 74 ~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-snt-St~~~~~~~~ 130 (287)
T PRK08293 74 LTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA-TNS-STLLPSQFAE 130 (287)
T ss_pred EeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE-ECc-ccCCHHHHHh
Confidence 1357889999999877432 22235556555544 2333442 343 3334544444
No 161
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.31 E-value=0.89 Score=49.04 Aligned_cols=96 Identities=16% Similarity=0.229 Sum_probs=56.9
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCC-CCCCC--cHH-HHHhccccCCCCHHHHhccCcEEEecCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKG-RSELM--DSN-KARFIKDTTARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~-r~~~l--~~~-k~~~a~~~~~~~L~e~i~~~~vliG~S~ 271 (766)
||.|+|+|+.|..+|..|.+.|. +++++++ +--.+. +...+ ... ........-..+..++++.+|++| ++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~---~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi-lav 76 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR---DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVI-LAV 76 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC---ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEE-EEe
Confidence 79999999999999999999884 4888887 210000 00000 000 000000011235666667788665 333
Q ss_pred CCCCCHHHHHhhc----cCcEEEeccCCC
Q psy14495 272 SGVLKKEMVLQMA----KNPIILALANPL 296 (766)
Q Consensus 272 ~g~ft~evv~~M~----~~PiIfaLsNPt 296 (766)
+....+++++.++ ++.+|+.+.|.-
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii~~~nG~ 105 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQNGI 105 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEEEeeCCC
Confidence 2235678887776 456788899974
No 162
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=90.26 E-value=1.8 Score=47.78 Aligned_cols=119 Identities=16% Similarity=0.249 Sum_probs=82.9
Q ss_pred CCcEEecCC---chhHHHHHHHHHHHHhH---------------------hCCcCCCceEEEECcchhhHHHHHHHH-Hc
Q psy14495 162 KIPVFHDDQ---HGTAIIVGSAILNGLKL---------------------VKKKMKDCKLVVSGAGAAALACLDLII-DL 216 (766)
Q Consensus 162 ~~~~fnDD~---qGTa~v~lA~ll~al~~---------------------~~~~l~d~~iv~~GaG~ag~gia~~l~-~~ 216 (766)
+|++.|--- ..+|=-+++.+|+..|. .|..|.++++.|+|.|..|..+|+.+. ..
T Consensus 89 gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~f 168 (323)
T PRK15409 89 KILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGF 168 (323)
T ss_pred CCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcC
Confidence 688888432 33555677777777763 145689999999999999999999997 77
Q ss_pred CCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEE---ecC--CCCCCCHHHHHhhccCcEEEe
Q psy14495 217 GFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFL---GLS--VSGVLKKEMVLQMAKNPIILA 291 (766)
Q Consensus 217 g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vli---G~S--~~g~ft~evv~~M~~~PiIfa 291 (766)
|+. +..+|+.. . .+....+ .....+|.|+++.+|+++ .++ +.+.|+++.++.|.+..++.-
T Consensus 169 gm~---V~~~~~~~-----~----~~~~~~~--~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN 234 (323)
T PRK15409 169 NMP---ILYNARRH-----H----KEAEERF--NARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFIN 234 (323)
T ss_pred CCE---EEEECCCC-----c----hhhHHhc--CcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEE
Confidence 876 66666521 0 0110111 112347999999999764 222 258999999999999888886
Q ss_pred ccC
Q psy14495 292 LAN 294 (766)
Q Consensus 292 LsN 294 (766)
.|.
T Consensus 235 ~aR 237 (323)
T PRK15409 235 AGR 237 (323)
T ss_pred CCC
Confidence 664
No 163
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.21 E-value=1 Score=56.93 Aligned_cols=94 Identities=11% Similarity=0.143 Sum_probs=55.7
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCC-------------------cc---EE--EEcCCccccCCCCCCCcHHHHHhc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPL-------------------QN---IF--VTDLAGVLYKGRSELMDSNKARFI 248 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~-------------------~~---i~--~~D~~Glv~~~r~~~l~~~k~~~a 248 (766)
.-.+|||.|+|..|.|.++++..+|... ++ +| .+.+.-.+....++.--+.+.+|+
T Consensus 202 ~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~~ 281 (1042)
T PLN02819 202 CPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYYA 281 (1042)
T ss_pred CCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhcc
Confidence 3589999999999999999998776541 01 11 001111111000000111233444
Q ss_pred cccCC-CC-HHHHhccCcEEEecCC-----CCCCCHH-HHHhhccC
Q psy14495 249 KDTTA-RT-LSDIIPNADIFLGLSV-----SGVLKKE-MVLQMAKN 286 (766)
Q Consensus 249 ~~~~~-~~-L~e~i~~~~vliG~S~-----~g~ft~e-vv~~M~~~ 286 (766)
+.... .. +++++..+|||||+=. |-.+|++ +++.|.+.
T Consensus 282 ~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G 327 (1042)
T PLN02819 282 HPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKG 327 (1042)
T ss_pred CchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCC
Confidence 43332 23 5678889999999842 5689999 88888853
No 164
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.18 E-value=0.48 Score=52.98 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=36.4
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
..+|++.||+|+|+|..|..++..|...|+. +|.++|.+=
T Consensus 23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg--~i~lvD~D~ 62 (355)
T PRK05597 23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGVG--HITIIDDDT 62 (355)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCE
Confidence 3568899999999999999999999999998 899999973
No 165
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.13 E-value=0.61 Score=54.63 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHhCCCccccccccCCCCchHHHHHHHhhcCCCcE--EecCCchhHHHHHHHHHHHHhHh--------CCc
Q psy14495 122 DPDKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPV--FHDDQHGTAIIVGSAILNGLKLV--------KKK 191 (766)
Q Consensus 122 ~~~~~v~~v~~~~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~--fnDD~qGTa~v~lA~ll~al~~~--------~~~ 191 (766)
+.-+..+.+....|+ |..|=+....-.++.++|.- +..|+ +||+..+.|....+-+++.++.. ...
T Consensus 134 ~~v~~~~~~a~~~p~---i~~~~id~~~~~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 209 (515)
T TIGR03140 134 DVVQALNQMALLNPN---ISHTMIDGALFQDEVEALGI-QGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQ 209 (515)
T ss_pred HHHHHHHHHHHhCCC---ceEEEEEchhCHHHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccc
Confidence 333444555666674 44555777777888999976 45775 47777788888888888877654 122
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
-.+.+++|+|+|+||+..|..+.+.|.+ +.++|+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEec
Confidence 4467899999999999999999999976 667765
No 166
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.02 E-value=1.2 Score=47.86 Aligned_cols=95 Identities=15% Similarity=0.238 Sum_probs=59.5
Q ss_pred CceEEEECcchhhHHHHHHHHHcC-CCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLG-FPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVS 272 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g-~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~ 272 (766)
-.||.|+|+|.-|.++++.|.+.| +...+++++|+. . .+.+...+..|-- .-..+..|+++.+|++| ++.+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~----~--~~~~~~l~~~~g~-~~~~~~~e~~~~aDvVi-lav~ 74 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRS----N--ETRLQELHQKYGV-KGTHNKKELLTDANILF-LAMK 74 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC----C--HHHHHHHHHhcCc-eEeCCHHHHHhcCCEEE-EEeC
Confidence 468999999999999999999988 344578877752 0 0112333333211 12346788888898755 4442
Q ss_pred CCCCHHHHHhhc----cCcEEEeccCCC
Q psy14495 273 GVLKKEMVLQMA----KNPIILALANPL 296 (766)
Q Consensus 273 g~ft~evv~~M~----~~PiIfaLsNPt 296 (766)
....+++++.+. +..+|..+++-.
T Consensus 75 p~~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 75 PKDVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 223345556554 456888776554
No 167
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=89.90 E-value=0.84 Score=49.04 Aligned_cols=92 Identities=24% Similarity=0.360 Sum_probs=64.2
Q ss_pred ceEEEECcchhhHHHHHHHHHcC-CCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCC-C
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLG-FPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSV-S 272 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g-~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~-~ 272 (766)
.||.|+|+|..|-+++.-|.+.| ++.++|+++|+. .+.....+..|-... ..+..++++.+|+++ ++. |
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~-------~e~~~~l~~~~g~~~-~~~~~~~~~~advv~-LavKP 72 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS-------EEKRAALAAEYGVVT-TTDNQEAVEEADVVF-LAVKP 72 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCC-------HHHHHHHHHHcCCcc-cCcHHHHHhhCCEEE-EEeCh
Confidence 58999999999999999999999 677899988872 111223333442222 567889999998877 665 4
Q ss_pred CCCCHHHHHhhc---cCcEEEeccCCC
Q psy14495 273 GVLKKEMVLQMA---KNPIILALANPL 296 (766)
Q Consensus 273 g~ft~evv~~M~---~~PiIfaLsNPt 296 (766)
-.+ +++++.+. +..+|..+.=..
T Consensus 73 q~~-~~vl~~l~~~~~~~lvISiaAGv 98 (266)
T COG0345 73 QDL-EEVLSKLKPLTKDKLVISIAAGV 98 (266)
T ss_pred HhH-HHHHHHhhcccCCCEEEEEeCCC
Confidence 333 57888776 466676665443
No 168
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.86 E-value=1.2 Score=48.40 Aligned_cols=144 Identities=19% Similarity=0.241 Sum_probs=97.1
Q ss_pred CCCccccCCCCC-CHHHHHHHHHHh--CCCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecC---------Cch
Q psy14495 110 GIDVFDLEINET-DPDKLCDIIFSL--EPTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDD---------QHG 172 (766)
Q Consensus 110 gi~~l~v~~~~~-~~~~~v~~v~~~--~p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD---------~qG 172 (766)
||++-.+.+..+ .-++|.+.+..+ .|+.-+ +|+ +++.....++.+.-.+| +=.||.. ..+
T Consensus 60 Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KD---VDGl~~~n~g~l~~g~~~~ 136 (282)
T PRK14180 60 GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKD---VDGFHPTNVGRLQLRDKKC 136 (282)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcccc---ccccChhhHHHHhcCCCCC
Confidence 566555555442 456788877777 344322 333 34443333333333332 2244422 233
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT 251 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~ 251 (766)
-.-+|-.|++.=|+..+.+++..++|++|.+ ..|--+|.||.+.|.+ +.+|+|+ |
T Consensus 137 ~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AT---Vt~chs~---T------------------ 192 (282)
T PRK14180 137 LESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKAT---VTTCHRF---T------------------ 192 (282)
T ss_pred cCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE---EEEEcCC---C------------------
Confidence 3566888999999999999999999999976 4688899999988866 8888773 1
Q ss_pred CCCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 252 TARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 252 ~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-.-+ ++.++++|++.
T Consensus 193 --~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~ 222 (282)
T PRK14180 193 --TDLKSHTTKADILIVAVGKPNFITADMVKE 222 (282)
T ss_pred --CCHHHHhhhcCEEEEccCCcCcCCHHHcCC
Confidence 137777899999998777 89999999875
No 169
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=89.61 E-value=1.2 Score=49.58 Aligned_cols=148 Identities=14% Similarity=0.171 Sum_probs=95.2
Q ss_pred cCCCccccCCCCC-CHHHHHHHHHHhC--CCc-cc-cccccCCCCchHHHHHHHhhcCCCcEEecC----------Cchh
Q psy14495 109 AGIDVFDLEINET-DPDKLCDIIFSLE--PTF-GG-INLEDIKAPECFYIEKKLRNHMKIPVFHDD----------QHGT 173 (766)
Q Consensus 109 ~gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~-g~-i~~ED~~~~~af~il~~~~~~~~~~~fnDD----------~qGT 173 (766)
-||++..+.+..+ .-+|+++.+..+- |+. |. +|+==-+.-+..++++....+-++=.||.- ..+-
T Consensus 131 ~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f 210 (364)
T PLN02616 131 VGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLF 210 (364)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCC
Confidence 3566555554443 4567888777663 544 32 343211111222333322111112233311 1233
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT 252 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~ 252 (766)
.-+|-.|++.-|+..+.+++..++||+|-+ --|--+|.||.+.|.+ +++|.|+-
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~AT---VTicHs~T---------------------- 265 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDAT---VSIVHSRT---------------------- 265 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCe---EEEeCCCC----------------------
Confidence 456778899999999999999999999975 4688889999998876 88887631
Q ss_pred CCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-.-+ ++.++.|||+.
T Consensus 266 -~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~ 295 (364)
T PLN02616 266 -KNPEEITREADIIISAVGQPNMVRGSWIKP 295 (364)
T ss_pred -CCHHHHHhhCCEEEEcCCCcCcCCHHHcCC
Confidence 247888899999998877 89999999875
No 170
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=89.43 E-value=1.8 Score=48.00 Aligned_cols=93 Identities=15% Similarity=0.236 Sum_probs=68.4
Q ss_pred HhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHh-ccccCCCCHHHHhccCcE
Q psy14495 187 LVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARF-IKDTTARTLSDIIPNADI 265 (766)
Q Consensus 187 ~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~-a~~~~~~~L~e~i~~~~v 265 (766)
..|.++...++-|+|.|.-|..+|+.+...|++ +.-.|++. + ++....+ ++.. +|.|.++.+|+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~---v~y~~~~~--------~-~~~~~~~~~~y~---~l~ell~~sDi 203 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMK---VLYYDRSP--------N-PEAEKELGARYV---DLDELLAESDI 203 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHhcCCCE---EEEECCCC--------C-hHHHhhcCceec---cHHHHHHhCCE
Confidence 456788999999999999999999999977877 55566532 2 2222222 3322 39999999998
Q ss_pred EEecC-----CCCCCCHHHHHhhccCcEEEeccC
Q psy14495 266 FLGLS-----VSGVLKKEMVLQMAKNPIILALAN 294 (766)
Q Consensus 266 liG~S-----~~g~ft~evv~~M~~~PiIfaLsN 294 (766)
++-.- +.++++++.++.|.+.-++.=.|.
T Consensus 204 i~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaR 237 (324)
T COG1052 204 ISLHCPLTPETRHLINAEELAKMKPGAILVNTAR 237 (324)
T ss_pred EEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCC
Confidence 86442 257999999999999888775544
No 171
>PRK08291 ectoine utilization protein EutC; Validated
Probab=89.30 E-value=2 Score=47.54 Aligned_cols=98 Identities=21% Similarity=0.230 Sum_probs=63.8
Q ss_pred CceEEEECcchhhHHHHHHHHH-cCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc-----cCCCCHHHHhccCcEEE
Q psy14495 194 DCKLVVSGAGAAALACLDLIID-LGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD-----TTARTLSDIIPNADIFL 267 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~-~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~-----~~~~~L~e~i~~~~vli 267 (766)
.++++|+|+|..|-.++..+.. .+++ +++++|+. . +....+...+.+. ....++.++++++|+++
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~--~V~v~~R~----~---~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi 202 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIR--EVRVWARD----A---AKAEAYAADLRAELGIPVTVARDVHEAVAGADIIV 202 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCC--EEEEEcCC----H---HHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEE
Confidence 4699999999999999888875 4555 78888772 1 1233333333221 12367899999999998
Q ss_pred ecCC--CCCCCHHHHHhhccCcEEEeccC--CCC-ccCHhh
Q psy14495 268 GLSV--SGVLKKEMVLQMAKNPIILALAN--PLP-EILPED 303 (766)
Q Consensus 268 G~S~--~g~ft~evv~~M~~~PiIfaLsN--Pt~-E~~pe~ 303 (766)
-+.. ...|+.++++. .--|.++.. |.+ |+.|+-
T Consensus 203 ~aT~s~~p~i~~~~l~~---g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 203 TTTPSEEPILKAEWLHP---GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred EeeCCCCcEecHHHcCC---CceEEeeCCCCCCcccCCHHH
Confidence 7653 44677777653 223444433 444 888875
No 172
>PRK08328 hypothetical protein; Provisional
Probab=89.28 E-value=0.38 Score=50.47 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=35.6
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..+|++.||+++|+|..|..++..|...|+. +|+++|.+
T Consensus 22 q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg--~i~lvD~D 60 (231)
T PRK08328 22 QEKLKKAKVAVVGVGGLGSPVAYYLAAAGVG--RILLIDEQ 60 (231)
T ss_pred HHHHhCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCC
Confidence 3468889999999999999999999999998 89999986
No 173
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.22 E-value=1.4 Score=47.90 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=94.8
Q ss_pred CCCccccCCCCC-CHHHHHHHHHHhC--CCccc--ccc---ccCCCCchHHHHHHHhhcCCCcEEecCCch--------h
Q psy14495 110 GIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INL---EDIKAPECFYIEKKLRNHMKIPVFHDDQHG--------T 173 (766)
Q Consensus 110 gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~---ED~~~~~af~il~~~~~~~~~~~fnDD~qG--------T 173 (766)
||++-.+.+..+ ..+||++.+..+- |+.=+ +|+ +.+ +-.++++.....-++=.||..-.| -
T Consensus 58 Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i---~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~ 134 (287)
T PRK14173 58 GLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHI---DFQRVLEAIDPLKDVDGFHPLNVGRLWMGGEAL 134 (287)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCC---CHHHHHhccCccccccccChhhhHHHhcCCCCC
Confidence 577655555543 4667887777663 33322 332 233 222333332211123344433222 2
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT 252 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~ 252 (766)
.-+|-.|++.=|+..+.+++..++|++|.+ ..|.-+|.||.+.|.+ +++|.|+ |
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT---Vtichs~---T------------------- 189 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDAT---VTLAHSK---T------------------- 189 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE---EEEeCCC---C-------------------
Confidence 356788889999999999999999999975 5788899999988866 8877763 1
Q ss_pred CCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
.+|.+.++++|++|-..+ ++.+++||++.
T Consensus 190 -~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~ 219 (287)
T PRK14173 190 -QDLPAVTRRADVLVVAVGRPHLITPEMVRP 219 (287)
T ss_pred -CCHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence 138888999999997776 89999999875
No 174
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.09 E-value=1.4 Score=47.39 Aligned_cols=89 Identities=18% Similarity=0.243 Sum_probs=56.1
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhc---c-----c-cCCCCHHHHhccCcEE
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFI---K-----D-TTARTLSDIIPNADIF 266 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a---~-----~-~~~~~L~e~i~~~~vl 266 (766)
||.|+|+|+.|..+|..|.+.|. +++++|+++= .+...+..-. . . ....++.++ +.+|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~---~V~~~~r~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~v 70 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH---DVTLVARRGA-------HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLV 70 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC---eEEEEECChH-------HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEE
Confidence 79999999999999999999884 4888887421 1111111000 0 0 112345554 778876
Q ss_pred EecCCCCCCCHHHHHhhcc----CcEEEeccCCC
Q psy14495 267 LGLSVSGVLKKEMVLQMAK----NPIILALANPL 296 (766)
Q Consensus 267 iG~S~~g~ft~evv~~M~~----~PiIfaLsNPt 296 (766)
| ++.+..-++++++.+++ +-.|+.+.|.-
T Consensus 71 i-la~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 71 I-LAVKAYQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred E-EecccccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 6 44433356888888873 34677788874
No 175
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.07 E-value=1.5 Score=45.76 Aligned_cols=96 Identities=19% Similarity=0.347 Sum_probs=59.9
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCC-CCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGF-PLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~-~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~ 271 (766)
++.||.|+|+|..|.+++..|.+.|. ..++++++++. ..+.+...+..|-- ....++.++++++|++| ++.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~DiVi-iav 74 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------NVEKLDQLQARYNV-STTTDWKQHVTSVDTIV-LAM 74 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------CHHHHHHHHHHcCc-EEeCChHHHHhcCCEEE-Eec
Confidence 45799999999999999999988763 33357666642 01123333333321 11246888898998766 444
Q ss_pred CCCCCHHHHHhhc---cCcEEEeccCCC
Q psy14495 272 SGVLKKEMVLQMA---KNPIILALANPL 296 (766)
Q Consensus 272 ~g~ft~evv~~M~---~~PiIfaLsNPt 296 (766)
+...-+++++.++ +..+|+.++.-.
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCC
Confidence 3334478888776 334666665543
No 176
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.95 E-value=0.82 Score=53.59 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=72.2
Q ss_pred HHHHHHHHhCCCccccccccCCCCchHHHHHHHhhcCCCcE--EecCCchhHHHHHHHHHHHHhHhC--------CcCCC
Q psy14495 125 KLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPV--FHDDQHGTAIIVGSAILNGLKLVK--------KKMKD 194 (766)
Q Consensus 125 ~~v~~v~~~~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~--fnDD~qGTa~v~lA~ll~al~~~~--------~~l~d 194 (766)
+..+.+....| .|.+|=+...+-.++.++|.- +..|+ +||+....|....+-++..+.... ....+
T Consensus 136 ~~~~~~a~~~~---~i~~~~id~~~~~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (517)
T PRK15317 136 QALNLMAVLNP---NITHTMIDGALFQDEVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDP 211 (517)
T ss_pred HHHHHHHHhCC---CceEEEEEchhCHhHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCC
Confidence 34444555556 456666777777888999975 35775 467777888888888888887532 22445
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..+||+|||.||+++|..+.+.|++ +.++|.+
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~ 243 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKGIR---TGIVAER 243 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc---EEEEecC
Confidence 6899999999999999999999986 7777654
No 177
>KOG0069|consensus
Probab=88.80 E-value=2.6 Score=46.75 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHhH--------------------hCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccc
Q psy14495 173 TAIIVGSAILNGLKL--------------------VKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVL 232 (766)
Q Consensus 173 Ta~v~lA~ll~al~~--------------------~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv 232 (766)
||-.+++-+|.++|- .|.+++..||.|+|.|+-|..+|+.|...| . +|.
T Consensus 121 vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~--~i~-------- 189 (336)
T KOG0069|consen 121 VADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFG-C--VIL-------- 189 (336)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhcc-c--eee--------
Confidence 566666777777764 234688999999999999999999999988 3 344
Q ss_pred cCCCC-CCCcHHHHHhccccCCCCHHHHhccCcEEEecC-----CCCCCCHHHHHhhccCcEEEeccCCCCccCHhhHhc
Q psy14495 233 YKGRS-ELMDSNKARFIKDTTARTLSDIIPNADIFLGLS-----VSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKS 306 (766)
Q Consensus 233 ~~~r~-~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S-----~~g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~ 306 (766)
|.+|. ......+..|++ .-++.|...+.|+++=.. +.++|+++.+..|.+.-+|.-.+.= +=|.-++.++
T Consensus 190 y~~r~~~~~~~~~~~~~~---~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG-~iide~~l~e 265 (336)
T KOG0069|consen 190 YHSRTQLPPEEAYEYYAE---FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARG-AIIDEEALVE 265 (336)
T ss_pred eecccCCchhhHHHhccc---ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccc-ccccHHHHHH
Confidence 33331 112344455554 456888889999876443 2579999999999988888765542 2344444444
Q ss_pred c-cCcEEEEcC
Q psy14495 307 V-RNDAIIATG 316 (766)
Q Consensus 307 ~-~~~ai~atG 316 (766)
+ ...-|.+.|
T Consensus 266 aL~sG~i~~aG 276 (336)
T KOG0069|consen 266 ALKSGKIAGAG 276 (336)
T ss_pred HHhcCCccccc
Confidence 4 333566666
No 178
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.63 E-value=0.95 Score=48.02 Aligned_cols=94 Identities=19% Similarity=0.294 Sum_probs=63.5
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSGV 274 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g~ 274 (766)
.||.|+|+|.-|..++..|.+.|....+++++|++. +.....+..|- -.-..+..++++.+|++| ++.+..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------~~~~~~~~~~g-~~~~~~~~~~~~~advVi-l~v~~~ 73 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------EKRAALAEEYG-VRAATDNQEAAQEADVVV-LAVKPQ 73 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------HHHHHHHHhcC-CeecCChHHHHhcCCEEE-EEcCHH
Confidence 479999999999999999999886555788888731 11222222221 011246778888888765 444444
Q ss_pred CCHHHHHhhcc--CcEEEeccCCCC
Q psy14495 275 LKKEMVLQMAK--NPIILALANPLP 297 (766)
Q Consensus 275 ft~evv~~M~~--~PiIfaLsNPt~ 297 (766)
..+++++.+.+ ..+|..++|-++
T Consensus 74 ~~~~v~~~l~~~~~~~vvs~~~gi~ 98 (267)
T PRK11880 74 VMEEVLSELKGQLDKLVVSIAAGVT 98 (267)
T ss_pred HHHHHHHHHHhhcCCEEEEecCCCC
Confidence 56678877764 358889998775
No 179
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.55 E-value=0.48 Score=49.16 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=35.7
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..+|++.||+++|+|..|..+|..|...|+. +|+++|.+
T Consensus 23 q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg--~i~lvD~D 61 (212)
T PRK08644 23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVG--NLKLVDFD 61 (212)
T ss_pred HHHHhCCCEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCC
Confidence 3468899999999999999999999999997 89999987
No 180
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=88.17 E-value=0.84 Score=48.65 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=64.5
Q ss_pred EEEECc-chhhHHHHHHHHHcCC-CCccEEEEcCCccccCCCCCCCcHHHHHhccc---cCCCCHHHHhccCcEEEecCC
Q psy14495 197 LVVSGA-GAAALACLDLIIDLGF-PLQNIFVTDLAGVLYKGRSELMDSNKARFIKD---TTARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 197 iv~~Ga-G~ag~gia~~l~~~g~-~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~---~~~~~L~e~i~~~~vliG~S~ 271 (766)
|.|+|| |..|.+++..|...|. ....++|+|.+.-.-+....++.+...++ .. +-..++.++++++|++|=+.+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCCCCEEEECCC
Confidence 579999 9999999999998873 22479999985411111001233332232 11 123578999999998763322
Q ss_pred ----CCC-----------CCHHHHHhhc---cCcEEEeccCCCCccCH
Q psy14495 272 ----SGV-----------LKKEMVLQMA---KNPIILALANPLPEILP 301 (766)
Q Consensus 272 ----~g~-----------ft~evv~~M~---~~PiIfaLsNPt~E~~p 301 (766)
+|. .-+++.+.|. ++.+++-.|||....+.
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~ 127 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITY 127 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH
Confidence 221 2345555555 68888888999865554
No 181
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.14 E-value=1.9 Score=47.11 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT 252 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~ 252 (766)
.-+|-.|++-=|+..|.+++..++|++|-+ .-|--+|.||.+.|.+ +++|.|+ |
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~at---Vtv~hs~---T------------------- 192 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANAT---VTIAHSR---T------------------- 192 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE---EEEeCCC---C-------------------
Confidence 346788888899999999999999999976 4688899999998876 7878763 1
Q ss_pred CCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
.+|.+.++++|++|-.-+ ++.++++|++.
T Consensus 193 -~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~ 222 (297)
T PRK14186 193 -QDLASITREADILVAAAGRPNLIGAEMVKP 222 (297)
T ss_pred -CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 137788899999997776 89999999885
No 182
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.11 E-value=0.74 Score=47.66 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=58.6
Q ss_pred eEEEEC-cchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhc---cc------cCCCCHHHHhccCcE
Q psy14495 196 KLVVSG-AGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFI---KD------TTARTLSDIIPNADI 265 (766)
Q Consensus 196 ~iv~~G-aG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a---~~------~~~~~L~e~i~~~~v 265 (766)
||.|+| +|..|.+++..|.+.| .+++++|++ . +........+. .. ....+..++++.+|+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G---~~V~v~~r~----~---~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDv 71 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG---NKIIIGSRD----L---EKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADV 71 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC---CEEEEEEcC----H---HHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCE
Confidence 799997 8999999999999988 357877763 1 11222211111 10 012366888999987
Q ss_pred EEecCCCCCCCHHHHHhhc---cCcEEEeccCCCC
Q psy14495 266 FLGLSVSGVLKKEMVLQMA---KNPIILALANPLP 297 (766)
Q Consensus 266 liG~S~~g~ft~evv~~M~---~~PiIfaLsNPt~ 297 (766)
+| ++.+....+++++.+. ...+|+.++||..
T Consensus 72 Vi-lavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 72 VI-LAVPWDHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred EE-EECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence 66 5543334466666665 3468999999964
No 183
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.81 E-value=0.52 Score=49.87 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=35.9
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.+|++.||+++|+|..|..+|..|...|+. +|.++|.+=
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~ 58 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVG--NLTLLDFDT 58 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCc
Confidence 468899999999999999999999999998 899999973
No 184
>PTZ00325 malate dehydrogenase; Provisional
Probab=87.79 E-value=1.7 Score=48.10 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=65.9
Q ss_pred CCceEEEECc-chhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc---cCCCCHHHHhccCcEEEe
Q psy14495 193 KDCKLVVSGA-GAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD---TTARTLSDIIPNADIFLG 268 (766)
Q Consensus 193 ~d~~iv~~Ga-G~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~---~~~~~L~e~i~~~~vliG 268 (766)
+-.||+|.|| |.-|..+|..|...|+. ..+.|+|.+ .. .+-.-+|.+.-. ...- ++..+..++++++|++|=
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~-~elvL~Di~-~~-~g~a~Dl~~~~~-~~~v~~~td~~~~~~~l~gaDvVVi 82 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHV-SELSLYDIV-GA-PGVAADLSHIDT-PAKVTGYADGELWEKALRGADLVLI 82 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCC-CEEEEEecC-CC-cccccchhhcCc-CceEEEecCCCchHHHhCCCCEEEE
Confidence 4459999999 99999999988866653 379999982 21 111012322111 1111 223445889999997653
Q ss_pred cC---C-CCC-----------CCHHHHHhhc---cCcEEEeccCCCCccCH
Q psy14495 269 LS---V-SGV-----------LKKEMVLQMA---KNPIILALANPLPEILP 301 (766)
Q Consensus 269 ~S---~-~g~-----------ft~evv~~M~---~~PiIfaLsNPt~E~~p 301 (766)
+. . +|. ..+++++.|. .+.+|+.-|||.-..++
T Consensus 83 taG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~ 133 (321)
T PTZ00325 83 CAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVP 133 (321)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH
Confidence 32 2 331 4456677776 47799999999854444
No 185
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.67 E-value=0.57 Score=52.06 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=36.6
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
..+|++.||+|+|+|..|..+|+.|..+|+. +|.++|.+=
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg--~i~lvD~D~ 58 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGIG--KLTIADRDY 58 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCc
Confidence 3468999999999999999999999999997 899999974
No 186
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.62 E-value=0.91 Score=49.37 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=58.4
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHh-----cc-------ccCCCCHHHHhccC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARF-----IK-------DTTARTLSDIIPNA 263 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~-----a~-------~~~~~~L~e~i~~~ 263 (766)
||.|+|+|..|..+|..|.+.|.. ++++|+..-. .+..+... -. -.-..++.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~---V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHD---VTLWARDPEQ-------AAEINADRENPRYLPGIKLPDNLRATTDLAEALADA 72 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCE---EEEEECCHHH-------HHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCC
Confidence 799999999999999999998864 7888874211 11111110 00 01124678888899
Q ss_pred cEEEecCCCCCCCHHHHHhhc----cCcEEEeccCCC
Q psy14495 264 DIFLGLSVSGVLKKEMVLQMA----KNPIILALANPL 296 (766)
Q Consensus 264 ~vliG~S~~g~ft~evv~~M~----~~PiIfaLsNPt 296 (766)
|++| ++.+....+++++.+. +..+|..++|-.
T Consensus 73 D~vi-~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 73 DLIL-VAVPSQALREVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred CEEE-EeCCHHHHHHHHHHHHhhcCCCCEEEEEeecc
Confidence 8876 4443335667766655 456888888753
No 187
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.60 E-value=0.56 Score=49.01 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=35.9
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.+|++.||+|+|+|.-|..+|..|...|+. +|+++|.+=
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg--~i~lvD~D~ 55 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVG--KLGLVDDDV 55 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCE
Confidence 468899999999999999999999999997 899999873
No 188
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=87.51 E-value=2 Score=47.75 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=94.4
Q ss_pred cCCCccccCCCCC-CHHHHHHHHHHhC--CCccc--cccccCCCCchHHHHHHHhhcCCCcEEecC----------Cchh
Q psy14495 109 AGIDVFDLEINET-DPDKLCDIIFSLE--PTFGG--INLEDIKAPECFYIEKKLRNHMKIPVFHDD----------QHGT 173 (766)
Q Consensus 109 ~gi~~l~v~~~~~-~~~~~v~~v~~~~--p~~g~--i~~ED~~~~~af~il~~~~~~~~~~~fnDD----------~qGT 173 (766)
-||++..+.+..+ .-+||++.+..+- |+.=+ +|+==.+.-+..++++.....-++=.||.- ..+-
T Consensus 114 ~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~ 193 (345)
T PLN02897 114 TGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLF 193 (345)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCC
Confidence 4677655555543 4667888887763 43322 232111111222232222111112222211 1233
Q ss_pred HHHHHHHHHHHHhHhCCcCCCceEEEECcc-hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC
Q psy14495 174 AIIVGSAILNGLKLVKKKMKDCKLVVSGAG-AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT 252 (766)
Q Consensus 174 a~v~lA~ll~al~~~~~~l~d~~iv~~GaG-~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~ 252 (766)
.-+|-.|++.=|+..+.+++..++||+|-+ ..|.-+|.||.+.|.+ +.+|.|+ |
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~AT---VTicHs~---T------------------- 248 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDAT---VSTVHAF---T------------------- 248 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCE---EEEEcCC---C-------------------
Confidence 456788889999999999999999999975 4688889999988866 7777763 1
Q ss_pred CCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 253 ARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 253 ~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
.+|.+.++++|++|-.-+ ++.++.||++.
T Consensus 249 -~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~ 278 (345)
T PLN02897 249 -KDPEQITRKADIVIAAAGIPNLVRGSWLKP 278 (345)
T ss_pred -CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 237788999999998777 89999999885
No 189
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.51 E-value=1.5 Score=48.49 Aligned_cols=103 Identities=15% Similarity=0.266 Sum_probs=60.5
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc-cc---CCCCHHHHhccCcEEEec
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK-DT---TARTLSDIIPNADIFLGL 269 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~-~~---~~~~L~e~i~~~~vliG~ 269 (766)
-.||.|+|||..|.++|.++...|+. .++|+|.+-=...++.-++.+. ..+.. .. ...++ ++++++|++|=+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~--~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l~~aDiVI~t 81 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLG--DVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDIAGSDVVIVT 81 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence 36999999999999999999998984 4999997432111110011211 11111 11 12455 678999987743
Q ss_pred CC----CCC----------------CCHHHHHhhc---cCcEEEeccCCCCccC
Q psy14495 270 SV----SGV----------------LKKEMVLQMA---KNPIILALANPLPEIL 300 (766)
Q Consensus 270 S~----~g~----------------ft~evv~~M~---~~PiIfaLsNPt~E~~ 300 (766)
.+ +|. +-.++.+.|. +.-+++--|||..-.+
T Consensus 82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t 135 (321)
T PTZ00082 82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMV 135 (321)
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHH
Confidence 32 222 1123444444 3448888899875333
No 190
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=87.42 E-value=0.38 Score=46.56 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=60.5
Q ss_pred ceEEEECc-chhhHHHHHHHHHcCCCCccEEEEcCC-ccccCCCCCCCcHHHHHhcccc-CCCCHHHHhccCcEEEecCC
Q psy14495 195 CKLVVSGA-GAAALACLDLIIDLGFPLQNIFVTDLA-GVLYKGRSELMDSNKARFIKDT-TARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 195 ~~iv~~Ga-G~ag~gia~~l~~~g~~~~~i~~~D~~-Glv~~~r~~~l~~~k~~~a~~~-~~~~L~e~i~~~~vliG~S~ 271 (766)
.||.|+|| |.-|..+|-+|+..|+-. ++.|+|.+ .... +..-++++...+.-+.. -.....+.++++|++|=+.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~-ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLAD-EIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSS-EEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-ceEEeccCcccce-eeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 38999999 999999999999988753 59999996 2111 11012333222221211 12367888999998773332
Q ss_pred ----CCC-------CCHHHHHhh----c---cCcEEEeccCCC
Q psy14495 272 ----SGV-------LKKEMVLQM----A---KNPIILALANPL 296 (766)
Q Consensus 272 ----~g~-------ft~evv~~M----~---~~PiIfaLsNPt 296 (766)
+|. .+-++++.+ . ++.+++-.|||.
T Consensus 79 ~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 79 VPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp TSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred ccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 331 111222222 2 688999999995
No 191
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=87.38 E-value=8.8 Score=42.70 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=71.6
Q ss_pred HHHHhhcCCCcEEe-cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHH----HHHcCCCCccEEEEcC
Q psy14495 154 EKKLRNHMKIPVFH-DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDL----IIDLGFPLQNIFVTDL 228 (766)
Q Consensus 154 l~~~~~~~~~~~fn-DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~----l~~~g~~~~~i~~~D~ 228 (766)
++.+.+...+||+| +|.+-.-.=+|+=++.-.+..|++++..||+++|-+.-+ +++. +...|+. ++++-.
T Consensus 115 ~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~--v~~Sl~~~~~~~g~~---v~~~~P 189 (334)
T PRK01713 115 VNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNN--MGNSLLLIGAKLGMD---VRICAP 189 (334)
T ss_pred HHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccC--HHHHHHHHHHHcCCE---EEEECC
Confidence 33333334699999 444455666788888777777778999999999997433 4443 3456875 888888
Q ss_pred CccccCCCCCCCcHHHHHhcccc-----CCCCHHHHhccCcEEEecCC
Q psy14495 229 AGVLYKGRSELMDSNKARFIKDT-----TARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 229 ~Glv~~~r~~~l~~~k~~~a~~~-----~~~~L~e~i~~~~vliG~S~ 271 (766)
+++.-.. ..-+.-+.+++.. ...++.++++++||+.-.++
T Consensus 190 ~~~~p~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w 234 (334)
T PRK01713 190 KALLPEA---SLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVW 234 (334)
T ss_pred chhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcce
Confidence 8873221 1111112333322 23689999999999987654
No 192
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.37 E-value=1.4 Score=47.42 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=60.6
Q ss_pred ceEEEECcchhhHHHHHHHHHcC-CCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLG-FPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSG 273 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g-~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g 273 (766)
+||.|+|+|.-|.+++..|.+.| +...+++++|++. .+.+...+..+....-..+..++++.+|++| +..+.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~------~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVi-lavpp 74 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK------NEHFNQLYDKYPTVELADNEAEIFTKCDHSF-ICVPP 74 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc------HHHHHHHHHHcCCeEEeCCHHHHHhhCCEEE-EecCH
Confidence 47999999999999999999988 4556788887631 0112222222211111356788888899877 55544
Q ss_pred CCCHHHHHhhc----cCcEEEeccCCC
Q psy14495 274 VLKKEMVLQMA----KNPIILALANPL 296 (766)
Q Consensus 274 ~ft~evv~~M~----~~PiIfaLsNPt 296 (766)
...+++++... ++.+|..++|-.
T Consensus 75 ~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 75 LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 44557777664 345666677654
No 193
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.05 E-value=3.9 Score=44.60 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=28.5
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+|.|+|+|..|.++|..|.+.|.+ ++++|..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~---V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHE---VRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCe---eEEEeCC
Confidence 3799999999999999999999975 8888875
No 194
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.82 E-value=0.58 Score=47.95 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=36.0
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
++|++.||+++|+|.-|.-+++.|...|+. +|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg--~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGID--SITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEECCc
Confidence 468899999999999999999999999998 899999974
No 195
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=86.66 E-value=10 Score=41.62 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=66.4
Q ss_pred cCCCcEEe-cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHH----HHHcCCCCccEEEEcCCccccC
Q psy14495 160 HMKIPVFH-DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDL----IIDLGFPLQNIFVTDLAGVLYK 234 (766)
Q Consensus 160 ~~~~~~fn-DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~----l~~~g~~~~~i~~~D~~Glv~~ 234 (766)
..++||+| +|-+..-.=+|+=++.-.+..|. +++.||+++|-.+ .+++. +...|+ +++++-.+++.-.
T Consensus 114 ~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-l~g~~v~~vGd~~---~v~~Sl~~~l~~~g~---~v~~~~P~~~~~~ 186 (304)
T TIGR00658 114 YASVPVINGLTDLFHPCQALADLLTIIEHFGK-LKGVKVVYVGDGN---NVCNSLMLAGAKLGM---DVVVATPEGYEPD 186 (304)
T ss_pred hCCCCEEECCCCCCChHHHHHHHHHHHHHhCC-CCCcEEEEEeCCC---chHHHHHHHHHHcCC---EEEEECCchhcCC
Confidence 34699999 44455566678887777666664 9999999999852 24444 445686 4888888876321
Q ss_pred CCCCCCcHHHHHhcccc-----CCCCHHHHhccCcEEEecCC
Q psy14495 235 GRSELMDSNKARFIKDT-----TARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 235 ~r~~~l~~~k~~~a~~~-----~~~~L~e~i~~~~vliG~S~ 271 (766)
+...+.-+.+++.. ...++.++++++||+.-.++
T Consensus 187 ---~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 187 ---ADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred ---HHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 11111112333322 23689999999999887653
No 196
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=86.61 E-value=0.85 Score=52.23 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=39.3
Q ss_pred ceEEEECcchhhHHHHH--HHH-HcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc-------CCCCHHHHhccCc
Q psy14495 195 CKLVVSGAGAAALACLD--LII-DLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT-------TARTLSDIIPNAD 264 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~--~l~-~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~-------~~~~L~e~i~~~~ 264 (766)
.||.|+|||+.|.+.+- .+. ...+.-.+++|+|.+- ++.+.+...-..++... -..++.++++++|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD 76 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREALDGAD 76 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCC
Confidence 37999999999887654 243 2244334799999742 11111111111111111 1357999999998
Q ss_pred EEE
Q psy14495 265 IFL 267 (766)
Q Consensus 265 vli 267 (766)
++|
T Consensus 77 ~Vi 79 (423)
T cd05297 77 FVI 79 (423)
T ss_pred EEE
Confidence 765
No 197
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.33 E-value=0.77 Score=48.66 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=35.7
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+|++.||+++|+|.-|.-++..|...|+. +|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVG--TLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCC
Confidence 478999999999999999999999999997 89999997
No 198
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=86.23 E-value=0.78 Score=45.95 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=23.3
Q ss_pred EEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 198 VVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 198 v~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+|+|||.||+..|..|.+.|++ ++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID--PVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESS
T ss_pred CEECcCHHHHHHHHHHHhCCCC--cEEEEeCC
Confidence 6899999999999999999986 69999986
No 199
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=86.00 E-value=0.92 Score=44.75 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=61.4
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSGV 274 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g~ 274 (766)
.||-|+|.|..|.++|+-|.+.|.+ ++.+|+. . +..+.....- -.-..++.|+++.+|+++=+=..+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~---v~~~d~~----~---~~~~~~~~~g--~~~~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE---VTVYDRS----P---EKAEALAEAG--AEVADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE---EEEEESS----H---HHHHHHHHTT--EEEESSHHHHHHHBSEEEE-SSSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe---EEeeccc----h---hhhhhhHHhh--hhhhhhhhhHhhcccceEeecccch
Confidence 5899999999999999999999976 8888862 1 1122222111 1234689999999998774322222
Q ss_pred CCHH------HHHhhccCcEEEeccCCCCccCHhhHhcc
Q psy14495 275 LKKE------MVLQMAKNPIILALANPLPEILPEDIKSV 307 (766)
Q Consensus 275 ft~e------vv~~M~~~PiIfaLsNPt~E~~pe~a~~~ 307 (766)
-.++ ++..+.+..||.=+|+-+|+.+-+-+...
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~ 108 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERL 108 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHH
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhh
Confidence 2233 34445578888888887777666655444
No 200
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.92 E-value=1.6 Score=47.48 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=58.4
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSGV 274 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g~ 274 (766)
.||.|+|+|..|..++..|.+.|.. .+++++|++. +.+...+..-.......++.++++.+|++| ++.+..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~-~~V~~~dr~~-------~~~~~a~~~g~~~~~~~~~~~~~~~aDvVi-iavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLA-GEIVGADRSA-------ETRARARELGLGDRVTTSAAEAVKGADLVI-LCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCC-cEEEEEECCH-------HHHHHHHhCCCCceecCCHHHHhcCCCEEE-ECCCHH
Confidence 5899999999999999999998863 2688888732 112222111111111246788888999887 444333
Q ss_pred CCHHHHHhhc----cCcEEEeccCCC
Q psy14495 275 LKKEMVLQMA----KNPIILALANPL 296 (766)
Q Consensus 275 ft~evv~~M~----~~PiIfaLsNPt 296 (766)
..+++++.+. +..+|+-++.-.
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k 103 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVK 103 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccch
Confidence 4456665543 456777666543
No 201
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=85.83 E-value=2.2 Score=47.21 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=54.5
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecC
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLS 270 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S 270 (766)
.|++.+|.|+|-|+-|-++|+.|...|++ +++.|+.+ . ..+..+. ......++.|+++.+|+++ +.
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~---ViV~~r~~---~----s~~~A~~---~G~~v~sl~Eaak~ADVV~-ll 78 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVE---VVVGVRPG---K----SFEVAKA---DGFEVMSVSEAVRTAQVVQ-ML 78 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCE---EEEEECcc---h----hhHHHHH---cCCEECCHHHHHhcCCEEE-Ee
Confidence 47889999999999999999999999986 77776532 1 1111111 1112348999999999865 33
Q ss_pred CC-----CCCCHHHHHhhccCc
Q psy14495 271 VS-----GVLKKEMVLQMAKNP 287 (766)
Q Consensus 271 ~~-----g~ft~evv~~M~~~P 287 (766)
.| +.+.++++..|.+..
T Consensus 79 LPd~~t~~V~~~eil~~MK~Ga 100 (335)
T PRK13403 79 LPDEQQAHVYKAEVEENLREGQ 100 (335)
T ss_pred CCChHHHHHHHHHHHhcCCCCC
Confidence 33 334444555555433
No 202
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.80 E-value=0.67 Score=47.51 Aligned_cols=40 Identities=10% Similarity=0.230 Sum_probs=36.6
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.++|++.||+|+|+|.-|.-++..|...|+. +|+++|.+-
T Consensus 16 Q~~L~~s~VlIiG~gglG~evak~La~~GVg--~i~lvD~d~ 55 (197)
T cd01492 16 QKRLRSARILLIGLKGLGAEIAKNLVLSGIG--SLTILDDRT 55 (197)
T ss_pred HHHHHhCcEEEEcCCHHHHHHHHHHHHcCCC--EEEEEECCc
Confidence 3568899999999999999999999999998 899999974
No 203
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.67 E-value=0.85 Score=48.01 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=35.6
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.+|++.||+++|+|..|..+++.|...|+. +|.++|.+=
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg--~i~LvD~D~ 45 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVG--KLTLIDFDV 45 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCE
Confidence 357889999999999999999999999997 899999973
No 204
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=85.66 E-value=8.2 Score=42.24 Aligned_cols=109 Identities=12% Similarity=0.152 Sum_probs=72.2
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc-----CCCCHHHHhccCcEEE
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT-----TARTLSDIIPNADIFL 267 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~-----~~~~L~e~i~~~~vli 267 (766)
.-.++.|+|+|.=|..-++.+... .+.++|.++|+. . +....+...+.+.. ...+++|+++++||++
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v-~~i~~v~v~~r~----~---~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~ 187 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV-YNPKRIRVYSRN----F---DHARAFAERFSKEFGVDIRPVDNAEAALRDADTIT 187 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc-CCCCEEEEECCC----H---HHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEE
Confidence 458999999999998888888763 234588888873 2 22334444443321 1368999999999999
Q ss_pred ecCC--CCCCCHHHHHhhccCcEEEeccCCC---CccCHhhHhcccCcEEEE
Q psy14495 268 GLSV--SGVLKKEMVLQMAKNPIILALANPL---PEILPEDIKSVRNDAIIA 314 (766)
Q Consensus 268 G~S~--~g~ft~evv~~M~~~PiIfaLsNPt---~E~~pe~a~~~~~~ai~a 314 (766)
-+.. ...|..++++. .--|-++--.+ .|+.|+-... .+.+|.
T Consensus 188 taT~s~~P~~~~~~l~p---g~hV~aiGs~~p~~~El~~~~l~~--a~~v~v 234 (301)
T PRK06407 188 SITNSDTPIFNRKYLGD---EYHVNLAGSNYPNRREAEHSVLND--ADIVVT 234 (301)
T ss_pred EecCCCCcEecHHHcCC---CceEEecCCCCCCcccCCHHHHHh--CCEEEE
Confidence 7643 56788888863 45566664433 3999874432 244553
No 205
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=85.56 E-value=0.79 Score=54.66 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=36.5
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl 231 (766)
.+|++.||+++|||.-|..+|+.|...|+. +|.++|.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg--~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVR--HITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcCCC--eEEEEcCCEE
Confidence 457899999999999999999999999998 8999998754
No 206
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.52 E-value=0.91 Score=50.39 Aligned_cols=98 Identities=15% Similarity=0.226 Sum_probs=58.4
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc--ccCCC--CCCCcHHHHHhccc-cCCCCHHHHhccCcEEEec
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV--LYKGR--SELMDSNKARFIKD-TTARTLSDIIPNADIFLGL 269 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl--v~~~r--~~~l~~~k~~~a~~-~~~~~L~e~i~~~~vliG~ 269 (766)
.||.|+|+|+-|..+|..|.+.| . ..+|..|..-. +.+.+ .+.++. ...+-.. .-..++.++++.+|++| +
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~-v~l~~~~~~~~~~i~~~~~~~~~l~~-~~~l~~~i~~t~d~~~a~~~aDlVi-l 83 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-P-TLQWVRSAETADDINDNHRNSRYLGN-DVVLSDTLRATTDFAEAANCADVVV-M 83 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-C-EEEEeCCHHHHHHHHhcCCCcccCCC-CcccCCCeEEECCHHHHHhcCCEEE-E
Confidence 68999999999999999999988 2 34554443211 11111 001110 0000000 11247888999998765 5
Q ss_pred CCCCCCCHHHHHhhc----cCcEEEeccCCC
Q psy14495 270 SVSGVLKKEMVLQMA----KNPIILALANPL 296 (766)
Q Consensus 270 S~~g~ft~evv~~M~----~~PiIfaLsNPt 296 (766)
+.+--+.+++++.++ ++.+|..++|--
T Consensus 84 avps~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 84 GVPSHGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred EeCHHHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 544447788888877 344677888854
No 207
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=85.51 E-value=2.3 Score=46.00 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc
Q psy14495 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT 251 (766)
Q Consensus 173 Ta~v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~ 251 (766)
---+|-+|++--|+..+.+|+..++|++|.+. -|--++.||...+.+ +.+|+|+-
T Consensus 135 ~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naT---VtvcHs~T--------------------- 190 (283)
T COG0190 135 FLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANAT---VTVCHSRT--------------------- 190 (283)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCE---EEEEcCCC---------------------
Confidence 33558899999999999999999999999875 577889999998877 88888842
Q ss_pred CCCCHHHHhccCcEEEecCC-CCCCCHHHHHh
Q psy14495 252 TARTLSDIIPNADIFLGLSV-SGVLKKEMVLQ 282 (766)
Q Consensus 252 ~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~ 282 (766)
++|.+.++++|++|-.-+ ++.|+.||++.
T Consensus 191 --~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~ 220 (283)
T COG0190 191 --KDLASITKNADIVVVAVGKPHFIKADMVKP 220 (283)
T ss_pred --CCHHHHhhhCCEEEEecCCccccccccccC
Confidence 237788899999986665 89999888876
No 208
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.40 E-value=6 Score=42.15 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=36.1
Q ss_pred HHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 179 SAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 179 A~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
+..+.+++..+.. .+.+++|+|+|+.|...+.+++..|.. +++.+|+
T Consensus 107 ~ta~~al~~~~~~-~g~~VlV~G~G~vG~~~~~~ak~~G~~--~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGDL-KGRRVLVVGAGMLGLTAAAAAAAAGAA--RVVAADP 153 (280)
T ss_pred HHHHHHHHhccCC-CCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEECC
Confidence 4445566665543 778999999999998888888888976 6887765
No 209
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=85.35 E-value=1.1 Score=44.65 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=27.7
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
||||+|+|.||+.+|..|...|.+ ++++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEeccc
Confidence 699999999999999999987765 88887643
No 210
>PRK14851 hypothetical protein; Provisional
Probab=85.25 E-value=2.3 Score=51.69 Aligned_cols=41 Identities=15% Similarity=0.383 Sum_probs=36.6
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl 231 (766)
.++|++.||+|+|+|.-|..++..|...|+- +|.++|-+=+
T Consensus 38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG--~l~LvD~D~v 78 (679)
T PRK14851 38 QERLAEAKVAIPGMGGVGGVHLITMVRTGIG--RFHIADFDQF 78 (679)
T ss_pred HHHHhcCeEEEECcCHHHHHHHHHHHHhCCC--eEEEEcCCEe
Confidence 3568999999999999999999999999996 8999998743
No 211
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.13 E-value=1.4 Score=49.61 Aligned_cols=89 Identities=12% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCC-----C-ccEEEEcCC-------ccccCCCC--CCCcHHHHHhccccC---C
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFP-----L-QNIFVTDLA-------GVLYKGRS--ELMDSNKARFIKDTT---A 253 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~-----~-~~i~~~D~~-------Glv~~~r~--~~l~~~k~~~a~~~~---~ 253 (766)
-...||.|+|+|+-|+++|..|.+.|-. . =.+|..|.. -.+.+.|. .-++..|. ..+ .
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~L----p~ni~~t 84 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKL----PDNIVAV 84 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcC----CCceEEe
Confidence 4557999999999999999999987731 1 257766652 01111110 01111111 111 2
Q ss_pred CCHHHHhccCcEEEecCCCCCCCHHHHHhhcc
Q psy14495 254 RTLSDIIPNADIFLGLSVSGVLKKEMVLQMAK 285 (766)
Q Consensus 254 ~~L~e~i~~~~vliG~S~~g~ft~evv~~M~~ 285 (766)
.++.++++++|++| ++.|--+-+++++.+.+
T Consensus 85 sdl~eav~~aDiIv-lAVPsq~l~~vl~~l~~ 115 (365)
T PTZ00345 85 SDLKEAVEDADLLI-FVIPHQFLESVLSQIKE 115 (365)
T ss_pred cCHHHHHhcCCEEE-EEcChHHHHHHHHHhcc
Confidence 57999999998665 44443456788887753
No 212
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=85.06 E-value=2.1 Score=47.14 Aligned_cols=108 Identities=21% Similarity=0.316 Sum_probs=66.0
Q ss_pred eEEEECc-chhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc---CCCCHHHHhccCcEEE---e
Q psy14495 196 KLVVSGA-GAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT---TARTLSDIIPNADIFL---G 268 (766)
Q Consensus 196 ~iv~~Ga-G~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~---~~~~L~e~i~~~~vli---G 268 (766)
||.|+|| |.-|..+|-+|...|+- +.+.|+|.+. ..+-.-+|.+.. ...+-. ...++.+.++++|++| |
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~-~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~daDivvitaG 76 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV-SELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKGADVVVIPAG 76 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC-cEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCCCCEEEEeCC
Confidence 6899999 99999999999887764 3799999876 122111243322 111111 1235789999999765 3
Q ss_pred cCC-CCC-------CCHHHHHhhc-------cCcEEEeccCCCC---ccCHhhHhcc
Q psy14495 269 LSV-SGV-------LKKEMVLQMA-------KNPIILALANPLP---EILPEDIKSV 307 (766)
Q Consensus 269 ~S~-~g~-------ft~evv~~M~-------~~PiIfaLsNPt~---E~~pe~a~~~ 307 (766)
.+. +|- .+-++++... +..+|+-.|||.- .+..+-++++
T Consensus 77 ~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~ 133 (312)
T TIGR01772 77 VPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKK 133 (312)
T ss_pred CCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHh
Confidence 322 341 2223333332 6899999999973 3444445554
No 213
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=84.92 E-value=1.7 Score=47.51 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=61.2
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc-c---cCCCCHHHHhccCcEEE-ec
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK-D---TTARTLSDIIPNADIFL-GL 269 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~-~---~~~~~L~e~i~~~~vli-G~ 269 (766)
.||.|+|+|..|.++|..+...|.. +++++|..--+.+++..++.+ ...+.. . +...++.+ ++++|++| -+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 3899999999999999999998875 499999832111111000100 000000 0 11246766 78898765 22
Q ss_pred CC---CC-C------CCHHHHH----hhc---cCcEEEeccCCCCccCHh
Q psy14495 270 SV---SG-V------LKKEMVL----QMA---KNPIILALANPLPEILPE 302 (766)
Q Consensus 270 S~---~g-~------ft~evv~----~M~---~~PiIfaLsNPt~E~~pe 302 (766)
+. +| . .+-++++ .+. ++.+|+-.|||.--+|..
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~ 127 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYV 127 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH
Confidence 22 22 1 3334444 343 589999999998655543
No 214
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=84.92 E-value=2.8 Score=45.80 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=58.8
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc--CCCCHHHHhccCcEEEecCC--
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT--TARTLSDIIPNADIFLGLSV-- 271 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~--~~~~L~e~i~~~~vliG~S~-- 271 (766)
||.|+|+|..|..+|..|...|+. .+++++|.+-=..++-..+|++......... ...+ .+.++++|++|=+.+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~-~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~-~~~l~~aDIVIitag~~ 79 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIA-DELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGD-YSDCKDADIVVITAGAP 79 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCC-CEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCC-HHHhCCCCEEEEccCCC
Confidence 899999999999999999998874 3699999842111111112222111111111 1123 345788999875543
Q ss_pred --CCC-------CC----HHHHHhhc---cCcEEEeccCCCC
Q psy14495 272 --SGV-------LK----KEMVLQMA---KNPIILALANPLP 297 (766)
Q Consensus 272 --~g~-------ft----~evv~~M~---~~PiIfaLsNPt~ 297 (766)
+|- -+ +++.+.|. +.-+|+-.|||.-
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d 121 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD 121 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH
Confidence 231 01 22333333 5789999999975
No 215
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.88 E-value=1.2 Score=42.78 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=30.6
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
||+++|+|.-|..+++.|...|+. +|+++|.+-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~--~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEEcCCC
Confidence 689999999999999999999996 899999874
No 216
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.85 E-value=5.2 Score=43.90 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=37.0
Q ss_pred HHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 177 VGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 177 ~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
.++..+.+++..+. ..+++++|.|+|+.|...+.+++..|.. +++.+|+
T Consensus 154 ~~~~a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak~~G~~--~Vi~~~~ 202 (343)
T PRK09880 154 PLAVAIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVKTLGAA--EIVCADV 202 (343)
T ss_pred HHHHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEEeC
Confidence 34444666665544 3678999999999999888888888976 6887776
No 217
>PRK05086 malate dehydrogenase; Provisional
Probab=84.84 E-value=2.5 Score=46.49 Aligned_cols=99 Identities=24% Similarity=0.268 Sum_probs=61.8
Q ss_pred ceEEEECc-chhhHHHHHHHHH-cCCCCccEEEEcCCccccCCCCCCCcHHHHHh-ccc--cCCCCHHHHhccCcEEEec
Q psy14495 195 CKLVVSGA-GAAALACLDLIID-LGFPLQNIFVTDLAGVLYKGRSELMDSNKARF-IKD--TTARTLSDIIPNADIFLGL 269 (766)
Q Consensus 195 ~~iv~~Ga-G~ag~gia~~l~~-~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~-a~~--~~~~~L~e~i~~~~vliG~ 269 (766)
.||+|+|| |..|..++.+|.. .+.- ..++++|++-. ..+. .++-.+.+. ..- .+..++.+.++++|++|=+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~-~el~L~d~~~~-~~g~--alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAG-SELSLYDIAPV-TPGV--AVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCc-cEEEEEecCCC-Ccce--ehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 48999999 9999999988855 3442 36899997522 1110 111111111 010 1135788899999976644
Q ss_pred CC----CCC-----------CCHHHHHhhc---cCcEEEeccCCCC
Q psy14495 270 SV----SGV-----------LKKEMVLQMA---KNPIILALANPLP 297 (766)
Q Consensus 270 S~----~g~-----------ft~evv~~M~---~~PiIfaLsNPt~ 297 (766)
.+ +|. ..+++++.|. .+.+|+-.|||.-
T Consensus 77 aG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D 122 (312)
T PRK05086 77 AGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVN 122 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchH
Confidence 43 331 4457777887 4779999999973
No 218
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=84.41 E-value=17 Score=40.49 Aligned_cols=113 Identities=11% Similarity=0.107 Sum_probs=70.9
Q ss_pred HHHHHhhcCCCcEEe-cCCchhHHHHHHHHHHHHhHhC-CcCCCceEEEECcchhh--HHHHHHHHHcCCCCccEEEEcC
Q psy14495 153 IEKKLRNHMKIPVFH-DDQHGTAIIVGSAILNGLKLVK-KKMKDCKLVVSGAGAAA--LACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 153 il~~~~~~~~~~~fn-DD~qGTa~v~lA~ll~al~~~~-~~l~d~~iv~~GaG~ag--~gia~~l~~~g~~~~~i~~~D~ 228 (766)
.++++.+..++||.| .+....-.=+|+=++.-.+..| +.++..+|+++|-+.-+ -..+.++...|+. ++++-.
T Consensus 113 ~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~---v~~~~P 189 (334)
T PRK12562 113 VVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLD---LRLVAP 189 (334)
T ss_pred HHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCE---EEEECC
Confidence 344444445699999 3334455566777777767766 46999999999987322 2223334456875 888888
Q ss_pred CccccCCCCCCCcHHHHHhccccC-----CCCHHHHhccCcEEEecCC
Q psy14495 229 AGVLYKGRSELMDSNKARFIKDTT-----ARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 229 ~Glv~~~r~~~l~~~k~~~a~~~~-----~~~L~e~i~~~~vliG~S~ 271 (766)
+|+.-.. ..-+.-+.+++... ..++.|+++++||+.-.++
T Consensus 190 ~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w 234 (334)
T PRK12562 190 QACWPEA---SLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVW 234 (334)
T ss_pred cccCCcH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 8763221 11111123443221 3689999999999998775
No 219
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.24 E-value=2.4 Score=44.89 Aligned_cols=93 Identities=14% Similarity=0.234 Sum_probs=58.7
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEE-ecCCCCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFL-GLSVSGV 274 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vli-G~S~~g~ 274 (766)
||.|+|+|..|-.+++-|.+.|...+.++++|+. . +........+....-..+..|+++.+|+++ .+. +..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~----~---~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~ 73 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN----A---QIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQI 73 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCC----H---HHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHH
Confidence 7999999999999999999988665567777752 1 112233333311112357888888898755 443 333
Q ss_pred CCHHHHHhhc--cCcEEEeccCCCC
Q psy14495 275 LKKEMVLQMA--KNPIILALANPLP 297 (766)
Q Consensus 275 ft~evv~~M~--~~PiIfaLsNPt~ 297 (766)
+ +++++... +..+|...+-+.+
T Consensus 74 ~-~~vl~~l~~~~~~~vis~~ag~~ 97 (258)
T PRK06476 74 A-EEVLRALRFRPGQTVISVIAATD 97 (258)
T ss_pred H-HHHHHHhccCCCCEEEEECCCCC
Confidence 3 56666553 4567777775553
No 220
>KOG0685|consensus
Probab=84.03 E-value=1.2 Score=50.95 Aligned_cols=36 Identities=31% Similarity=0.581 Sum_probs=29.3
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEc
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTD 227 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D 227 (766)
+..++.||||+|||.||++.|.-|.+.|.. ++.++-
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlE 52 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLENGFI--DVLILE 52 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHHhCCc--eEEEEE
Confidence 345566999999999999999999998877 565543
No 221
>KOG0029|consensus
Probab=84.03 E-value=1.2 Score=52.04 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=30.4
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.+.-+|+|+|||-||+.+|++|.+.|+. +.+...++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEARd 48 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEARD 48 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCc---eEEEeccC
Confidence 3455999999999999999999999988 66666654
No 222
>PRK06141 ornithine cyclodeaminase; Validated
Probab=84.00 E-value=6 Score=43.48 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=63.5
Q ss_pred CCceEEEECcchhhHHHHHHHHH-cCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc----cCCCCHHHHhccCcEEE
Q psy14495 193 KDCKLVVSGAGAAALACLDLIID-LGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD----TTARTLSDIIPNADIFL 267 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~-~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~----~~~~~L~e~i~~~~vli 267 (766)
...+++|+|+|..|-.++..+.. .++. +++++|+. .+ ....+...+.+. ....++.++++++|+++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~--~V~V~~Rs----~~---~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi 194 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIK--QVRVWGRD----PA---KAEALAAELRAQGFDAEVVTDLEAAVRQADIIS 194 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCC--EEEEEcCC----HH---HHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEE
Confidence 56799999999999999987665 4544 78888873 11 223333333221 11367999999999998
Q ss_pred ecCC--CCCCCHHHHHhhccCcEEEeccCCCC---ccCHhh
Q psy14495 268 GLSV--SGVLKKEMVLQMAKNPIILALANPLP---EILPED 303 (766)
Q Consensus 268 G~S~--~g~ft~evv~~M~~~PiIfaLsNPt~---E~~pe~ 303 (766)
-++. ...|+.++++. .-.|-+..-.++ |+.++-
T Consensus 195 ~aT~s~~pvl~~~~l~~---g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 195 CATLSTEPLVRGEWLKP---GTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred EeeCCCCCEecHHHcCC---CCEEEeeCCCCcccccCCHHH
Confidence 7654 23466666543 335555554333 888763
No 223
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.88 E-value=1.2 Score=47.88 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=36.8
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccc
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVL 232 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv 232 (766)
.+|++.+|+|+|+|..|.-+|+.|...|+. +|.++|.+=+-
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg--~itLiD~D~V~ 66 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGIG--AITLIDMDDVC 66 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCEec
Confidence 358899999999999999999999999998 89999987543
No 224
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=83.88 E-value=29 Score=38.17 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=83.6
Q ss_pred HHHHHhhcCCCcEEec-CCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 153 IEKKLRNHMKIPVFHD-DQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 153 il~~~~~~~~~~~fnD-D~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.++++.+..++||+|= |-+..-.=+|+=++.-.+..| .++..||+++|-.. ..-..+.++...|+. +.++-.++
T Consensus 111 ~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~---v~~~~P~~ 186 (304)
T PRK00779 111 TLEELAEYSTVPVINGLTDLSHPCQILADLLTIYEHRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFD---LRVATPKG 186 (304)
T ss_pred HHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHHHHHhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCE---EEEECCcc
Confidence 3445544457999992 223444556677666655555 59999999999821 112223445567865 88888877
Q ss_pred cccCCCCCCCcHHHHHhcccc-----CCCCHHHHhccCcEEEecCC-----------------CCCCCHHHHHhhccCcE
Q psy14495 231 VLYKGRSELMDSNKARFIKDT-----TARTLSDIIPNADIFLGLSV-----------------SGVLKKEMVLQMAKNPI 288 (766)
Q Consensus 231 lv~~~r~~~l~~~k~~~a~~~-----~~~~L~e~i~~~~vliG~S~-----------------~g~ft~evv~~M~~~Pi 288 (766)
+.-. .+....+++.. ...++.|+++++||+.=.++ +--+|++.++.+.++.|
T Consensus 187 ~~~~------~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~i 260 (304)
T PRK00779 187 YEPD------PEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAI 260 (304)
T ss_pred cCCC------HHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeE
Confidence 6321 12222233322 23689999999999886542 12467777777667766
Q ss_pred EEeccCCC---CccCHh
Q psy14495 289 ILALANPL---PEILPE 302 (766)
Q Consensus 289 IfaLsNPt---~E~~pe 302 (766)
|+- .-|. -|++.+
T Consensus 261 vmH-plP~~R~~Ei~~~ 276 (304)
T PRK00779 261 FMH-CLPAHRGEEVTDE 276 (304)
T ss_pred Eec-CCCccCCCcccHH
Confidence 664 3331 266665
No 225
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.87 E-value=3 Score=45.85 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=62.4
Q ss_pred eEEEECc-chhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc---CCCCHHHHhccCcEEEecCC
Q psy14495 196 KLVVSGA-GAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT---TARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 196 ~iv~~Ga-G~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~---~~~~L~e~i~~~~vliG~S~ 271 (766)
||.|+|| |.-|..+|-+|...|+. ..+.|+|.+ + .++-.-+|++.. .+.+-. ...++.+.++++|+.|=+.+
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~-~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLV-SELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC-cEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 8999999 99999999999888874 379999998 2 222211243332 111211 22457899999998763332
Q ss_pred ----CCC-------CCH----HHHHhhc---cCcEEEeccCCC
Q psy14495 272 ----SGV-------LKK----EMVLQMA---KNPIILALANPL 296 (766)
Q Consensus 272 ----~g~-------ft~----evv~~M~---~~PiIfaLsNPt 296 (766)
+|. -+- ++.+.+. +..+|+-.|||.
T Consensus 78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 78 VPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 442 122 2233332 689999999997
No 226
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=83.76 E-value=1.1 Score=48.33 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=28.7
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl 231 (766)
.+|+|+|||.||+.+|..|.+.|++ +.++|++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID---VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc---cccchhccc
Confidence 4799999999999999999999988 899998643
No 227
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=83.61 E-value=1.9 Score=50.17 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=41.2
Q ss_pred HHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 179 SAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 179 A~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
.|++.+++..+.++++.+++|+|+|.+|.+++..|.+.|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~---~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLARAGA---ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCC---EEEEEeC
Confidence 4677888888889999999999999999999999999996 4887776
No 228
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=83.60 E-value=2.4 Score=46.16 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=62.6
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHH---hccCcEEEecCCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDI---IPNADIFLGLSVS 272 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~---i~~~~vliG~S~~ 272 (766)
||-|+|.|..|..+|..|.+.|.. ++++|++- +.....+..-+ ....++.|. ++.+|+++=+-..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~---V~~~dr~~-------~~~~~l~~~g~--~~~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHD---CVGYDHDQ-------DAVKAMKEDRT--TGVANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCE---EEEEECCH-------HHHHHHHHcCC--cccCCHHHHHhhcCCCCEEEEEcCc
Confidence 799999999999999999998854 77777621 11222222111 112345554 4457887733223
Q ss_pred CCCCHHHHHhhc----cCcEEEeccCCCCccCHhhHh
Q psy14495 273 GVLKKEMVLQMA----KNPIILALANPLPEILPEDIK 305 (766)
Q Consensus 273 g~ft~evv~~M~----~~PiIfaLsNPt~E~~pe~a~ 305 (766)
+ ..+++++.+. +..+|+-+||..|+-+-+-+.
T Consensus 70 ~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~ 105 (298)
T TIGR00872 70 G-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK 105 (298)
T ss_pred h-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH
Confidence 4 7777777665 568999999988766665443
No 229
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.89 E-value=1.3 Score=48.91 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=29.2
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.||.|+|+|..|.++|..+...|.. ++++|..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~---V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD---VVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe---EEEEeCC
Confidence 5899999999999999999999987 8889874
No 230
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.58 E-value=1.4 Score=48.93 Aligned_cols=40 Identities=20% Similarity=0.422 Sum_probs=36.3
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
..+|++.||+|+|+|.-|..+|..|...|+. +|.++|.+-
T Consensus 19 Q~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~ 58 (339)
T PRK07688 19 QQKLREKHVLIIGAGALGTANAEMLVRAGVG--KVTIVDRDY 58 (339)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCc
Confidence 3568999999999999999999999999997 899999964
No 231
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.22 E-value=4.7 Score=44.62 Aligned_cols=106 Identities=15% Similarity=0.189 Sum_probs=64.8
Q ss_pred ceEEEECc-chhhHHHHHHHHHcCCCCc----cEEEEcCCcc--ccCCCCCCCcHHHHHhccccC-CCCHHHHhccCcEE
Q psy14495 195 CKLVVSGA-GAAALACLDLIIDLGFPLQ----NIFVTDLAGV--LYKGRSELMDSNKARFIKDTT-ARTLSDIIPNADIF 266 (766)
Q Consensus 195 ~~iv~~Ga-G~ag~gia~~l~~~g~~~~----~i~~~D~~Gl--v~~~r~~~l~~~k~~~a~~~~-~~~L~e~i~~~~vl 266 (766)
.||.|.|| |..|..++..|...|+-.+ .+.|+|.+.- ..++..-+|.+...++.+... ..+..+.++++|+.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999999 9999999999998887543 6999998641 111111134443323332211 14678999999986
Q ss_pred EecCC----CCC-----------CCHHHHHhhc----cCcEEEeccCCCCccC
Q psy14495 267 LGLSV----SGV-----------LKKEMVLQMA----KNPIILALANPLPEIL 300 (766)
Q Consensus 267 iG~S~----~g~-----------ft~evv~~M~----~~PiIfaLsNPt~E~~ 300 (766)
|=+.+ +|- +-+++.+.+. +.-+|+-.|||.--.+
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t 133 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNA 133 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHH
Confidence 63332 442 1133444442 5677888899964333
No 232
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=82.09 E-value=2.2 Score=36.63 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=31.2
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcccc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLY 233 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~ 233 (766)
|++|+|+|..|+-+|..|.+.|. +++++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh
Confidence 79999999999999999999985 589999887666
No 233
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=81.90 E-value=2.5 Score=45.99 Aligned_cols=98 Identities=19% Similarity=0.360 Sum_probs=58.2
Q ss_pred EEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCC----CCcHHHHHhccc---cCCCCHHHHhccCcEEE--
Q psy14495 197 LVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSE----LMDSNKARFIKD---TTARTLSDIIPNADIFL-- 267 (766)
Q Consensus 197 iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~----~l~~~k~~~a~~---~~~~~L~e~i~~~~vli-- 267 (766)
|.|+|||..|.++|..+...|+. .++|+|.+ +++.. ++.+........ ....+. +.++++|++|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~--eV~L~Di~----e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG--DVVLLDIV----EGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc--EEEEEeCC----CcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEe
Confidence 57999999999999999988875 79999985 22210 111111000000 011344 5689999876
Q ss_pred -ecCC-CCC-----------CCHHHHHhhc---cCcEEEeccCCCCccCH
Q psy14495 268 -GLSV-SGV-----------LKKEMVLQMA---KNPIILALANPLPEILP 301 (766)
Q Consensus 268 -G~S~-~g~-----------ft~evv~~M~---~~PiIfaLsNPt~E~~p 301 (766)
|... +|- +-+++++.|. +..+++-.|||..-.+.
T Consensus 74 ~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~ 123 (300)
T cd01339 74 AGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTY 123 (300)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH
Confidence 2222 221 1234555555 57788899999854444
No 234
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=81.85 E-value=1.6 Score=46.20 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=28.2
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+|+|+|||.||+.+|..|.+.|.+ +.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK---TLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC---EEEEecc
Confidence 689999999999999999999875 9999975
No 235
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=81.84 E-value=2.4 Score=46.62 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=55.9
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCc-----HHHHHhccc--cCCCCHHHHhccCcEEE
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMD-----SNKARFIKD--TTARTLSDIIPNADIFL 267 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~-----~~k~~~a~~--~~~~~L~e~i~~~~vli 267 (766)
.||.|+|+|.-|..+|..|.+.|. +++++|+..-...-+...+. ..+..+... .-..++ ++++.+|++|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~---~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 78 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA---DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL 78 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC---cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence 479999999999999999999995 48888874211000000000 000000000 001233 5677788766
Q ss_pred ecCCCCCCCHHHHHhhc----cCcEEEeccCCC
Q psy14495 268 GLSVSGVLKKEMVLQMA----KNPIILALANPL 296 (766)
Q Consensus 268 G~S~~g~ft~evv~~M~----~~PiIfaLsNPt 296 (766)
++.+....+++++.+. +..+|..+.|.-
T Consensus 79 -l~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~ 110 (341)
T PRK08229 79 -VTVKSAATADAAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred -EEecCcchHHHHHHHHhhCCCCCEEEEeCCCC
Confidence 3332223467777765 457888888864
No 236
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=81.77 E-value=10 Score=41.86 Aligned_cols=102 Identities=23% Similarity=0.279 Sum_probs=68.4
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc-c---cCCCCHHHHhccCcEEEe
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK-D---TTARTLSDIIPNADIFLG 268 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~-~---~~~~~L~e~i~~~~vliG 268 (766)
.-.++.|+|+|.-|-..++.+... ...++++++|+. .+ ....+...+.+ . ....+..|+++++||++-
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~-~~~~~v~V~~r~----~~---~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVit 198 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV-FDLEEVSVYCRT----PS---TREKFALRASDYEVPVRAATDPREAVEGCDILVT 198 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEECCC----HH---HHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEE
Confidence 357899999999988777666552 234689998882 22 22333332222 1 124689999999999886
Q ss_pred cCC--CCCCCHHHHHhhccCcEEEeccCCCC---ccCHhhHh
Q psy14495 269 LSV--SGVLKKEMVLQMAKNPIILALANPLP---EILPEDIK 305 (766)
Q Consensus 269 ~S~--~g~ft~evv~~M~~~PiIfaLsNPt~---E~~pe~a~ 305 (766)
+.. ...|..++++ +..-|-++.-.+| |+.|+-..
T Consensus 199 aT~s~~P~~~~~~l~---~g~~v~~vGs~~p~~~Eld~~~l~ 237 (325)
T TIGR02371 199 TTPSRKPVVKADWVS---EGTHINAIGADAPGKQELDPEILK 237 (325)
T ss_pred ecCCCCcEecHHHcC---CCCEEEecCCCCcccccCCHHHHh
Confidence 653 4578887774 4777888886554 99997543
No 237
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.69 E-value=10 Score=44.61 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=29.5
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-.||.|+|+|..|.|||..+...|.+ ++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~---V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQ---VLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCe---EEEEeCC
Confidence 45899999999999999999999987 8888865
No 238
>PRK07340 ornithine cyclodeaminase; Validated
Probab=81.69 E-value=6.8 Score=42.89 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=67.3
Q ss_pred CCceEEEECcchhhHHHHHHHHH-cCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc-cC--CCCHHHHhccCcEEEe
Q psy14495 193 KDCKLVVSGAGAAALACLDLIID-LGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD-TT--ARTLSDIIPNADIFLG 268 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~-~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~-~~--~~~L~e~i~~~~vliG 268 (766)
...++.|+|+|..|-..++.+.. .++. +++++|+. .++ ...+...+.+. .. ..+++++++++|+++-
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~--~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~av~~aDiVit 194 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVR--RVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAIPEAVDLVVT 194 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCC--EEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHHhhcCCEEEE
Confidence 56799999999999999999875 4654 79988883 111 22333333211 01 3579999999999998
Q ss_pred cCC--CCCCCHHHHHhhccCcEEEeccCCCC---ccCHhhHh
Q psy14495 269 LSV--SGVLKKEMVLQMAKNPIILALANPLP---EILPEDIK 305 (766)
Q Consensus 269 ~S~--~g~ft~evv~~M~~~PiIfaLsNPt~---E~~pe~a~ 305 (766)
+.. ...|+. ++ .+.--|-++.-.+| |+.++-..
T Consensus 195 aT~s~~Pl~~~-~~---~~g~hi~~iGs~~p~~~El~~~~~~ 232 (304)
T PRK07340 195 ATTSRTPVYPE-AA---RAGRLVVAVGAFTPDMAELAPRTVR 232 (304)
T ss_pred ccCCCCceeCc-cC---CCCCEEEecCCCCCCcccCCHHHHh
Confidence 764 456664 33 45667777776554 99987443
No 239
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=81.41 E-value=2.7 Score=48.11 Aligned_cols=118 Identities=15% Similarity=0.319 Sum_probs=62.4
Q ss_pred ceEEEECcchhhH-HHHHHHHH--cCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc--C-----CCCHHHHhccCc
Q psy14495 195 CKLVVSGAGAAAL-ACLDLIID--LGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT--T-----ARTLSDIIPNAD 264 (766)
Q Consensus 195 ~~iv~~GaG~ag~-gia~~l~~--~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~--~-----~~~L~e~i~~~~ 264 (766)
.||+|+||||.-+ .+.+-|.. ..++-..|||+|-+- ..|-+.+...-+.+.+.. + ..++.||++++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGAD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCC
Confidence 4899999999732 22222332 334445899999852 222111111111222211 1 358999999998
Q ss_pred EEEecCC-CC----CCCH------------------------------HHHHhhc---cCcEEEeccCCCCccCHhhHhc
Q psy14495 265 IFLGLSV-SG----VLKK------------------------------EMVLQMA---KNPIILALANPLPEILPEDIKS 306 (766)
Q Consensus 265 vliG~S~-~g----~ft~------------------------------evv~~M~---~~PiIfaLsNPt~E~~pe~a~~ 306 (766)
.+|=.-. +| ...+ ++++.|. ++.+++-.|||...+|- -+.+
T Consensus 78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~-a~~k 156 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTE-AVLR 156 (419)
T ss_pred EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHH-HHHH
Confidence 7642211 22 1222 4444444 68999999999864432 2333
Q ss_pred ccCcEEEEcC
Q psy14495 307 VRNDAIIATG 316 (766)
Q Consensus 307 ~~~~ai~atG 316 (766)
....-+|++|
T Consensus 157 ~~~~rviGlc 166 (419)
T cd05296 157 HTGDRVIGLC 166 (419)
T ss_pred hccCCEEeeC
Confidence 3333455554
No 240
>KOG2337|consensus
Probab=81.28 E-value=1.3 Score=51.10 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=36.1
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYK 234 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~ 234 (766)
++..|.+++|||+-|+++||-|+..|++ +|.++|.--+-|.
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~WGvR--hITFvDn~kVsyS 378 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGWGVR--HITFVDNGKVSYS 378 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhhccc--eEEEEecCeeecc
Confidence 5678999999999999999999999999 9999998554443
No 241
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=81.14 E-value=24 Score=38.79 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=66.2
Q ss_pred CCCcEEe--cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcc---hhhHHHHHHHHHcCCCCccEEEEcCCccccCC
Q psy14495 161 MKIPVFH--DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAG---AAALACLDLIIDLGFPLQNIFVTDLAGVLYKG 235 (766)
Q Consensus 161 ~~~~~fn--DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG---~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~ 235 (766)
.++||.| |+..-.-.=+||=++.-.+..| .++..||+++|-+ ...-..+.++...|+. ++++-.+|+.-.
T Consensus 122 ~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~---~~~~~P~~~~~~- 196 (305)
T PRK00856 122 SDVPVINAGDGSHQHPTQALLDLLTIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAE---VRLIAPPTLLPE- 196 (305)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCE---EEEECCcccCcc-
Confidence 3699999 3333445567777777776666 5999999999986 3444555566677875 888888887311
Q ss_pred CCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCC
Q psy14495 236 RSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 236 r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~ 271 (766)
.+.+ + .-..++.|+++++||+.-.+.
T Consensus 197 ---~~~~----~---~~~~d~~ea~~~aDvvyt~~~ 222 (305)
T PRK00856 197 ---GMPE----Y---GVHTDLDEVIEDADVVMMLRV 222 (305)
T ss_pred ---cccc----e---EEECCHHHHhCCCCEEEECCc
Confidence 1211 1 234679999999999987664
No 242
>PLN02342 ornithine carbamoyltransferase
Probab=81.12 E-value=35 Score=38.26 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=66.2
Q ss_pred CCCcEEe-cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHH----HHcCCCCccEEEEcCCccccCC
Q psy14495 161 MKIPVFH-DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLI----IDLGFPLQNIFVTDLAGVLYKG 235 (766)
Q Consensus 161 ~~~~~fn-DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l----~~~g~~~~~i~~~D~~Glv~~~ 235 (766)
..+||.| .|-...-.=+|+=++.-.+..| +++..||+++|-+. . +++-+ ...|+. +.++-.+|+.-.
T Consensus 161 ~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~-n--va~Sli~~~~~~G~~---v~~~~P~~~~~~- 232 (348)
T PLN02342 161 SSVPVINGLTDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGN-N--IVHSWLLLAAVLPFH---FVCACPKGYEPD- 232 (348)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCc-h--hHHHHHHHHHHcCCE---EEEECCcccccC-
Confidence 4699999 3445567777888777666666 69999999999864 2 55443 356865 888888876321
Q ss_pred CCCCCcHHHHHhccc------cCCCCHHHHhccCcEEEecCC
Q psy14495 236 RSELMDSNKARFIKD------TTARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 236 r~~~l~~~k~~~a~~------~~~~~L~e~i~~~~vliG~S~ 271 (766)
+.-...+++ ....++.|+++++||+.-.++
T Consensus 233 ------~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W 268 (348)
T PLN02342 233 ------AKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVW 268 (348)
T ss_pred ------HHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCc
Confidence 111112221 123689999999999998875
No 243
>PRK06153 hypothetical protein; Provisional
Probab=80.75 E-value=1.5 Score=49.53 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=36.1
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..+|++.||+|+|+|.-|--++++|.+.|+. +|.++|.+
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVg--eI~LVD~D 209 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVAKTPVR--EIHLFDGD 209 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHHHcCCC--EEEEECCC
Confidence 3578999999999999999999999999997 89999997
No 244
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.68 E-value=3.3 Score=44.57 Aligned_cols=92 Identities=18% Similarity=0.308 Sum_probs=57.3
Q ss_pred ceEEEECcchhhHHHHHHHHHcCC-CCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGF-PLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSG 273 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~-~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g 273 (766)
.||.|+|+|..|-+++.-|.+.|. ..++|+++|+. . +.+...+..|.- .-..+..|+++++|++| ++.+.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~----~---~~~~~l~~~~g~-~~~~~~~e~~~~aDiIi-LavkP 73 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN----V---SNLKNASDKYGI-TITTNNNEVANSADILI-LSIKP 73 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC----H---HHHHHHHHhcCc-EEeCCcHHHHhhCCEEE-EEeCh
Confidence 379999999999999999999885 55689988872 1 122232222311 11246777888888765 44422
Q ss_pred CCCHHHHHhhc----cCcEEEeccCC
Q psy14495 274 VLKKEMVLQMA----KNPIILALANP 295 (766)
Q Consensus 274 ~ft~evv~~M~----~~PiIfaLsNP 295 (766)
---+++++.+. +..+|..+.-.
T Consensus 74 ~~~~~vl~~l~~~~~~~~lvISi~AG 99 (272)
T PRK12491 74 DLYSSVINQIKDQIKNDVIVVTIAAG 99 (272)
T ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCC
Confidence 33446666554 33466655543
No 245
>PRK06823 ornithine cyclodeaminase; Validated
Probab=80.67 E-value=14 Score=40.87 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=70.4
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc----cCCCCHHHHhccCcEEEe
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD----TTARTLSDIIPNADIFLG 268 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~----~~~~~L~e~i~~~~vliG 268 (766)
.-.++.++|+|.-+-..++.+... .+-++|+++|+. .+ ....+...+.+. ....+.+++++++||++-
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-~~i~~v~v~~r~----~~---~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~t 198 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-TDCRQLWVWGRS----ET---ALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVT 198 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-CCCCEEEEECCC----HH---HHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEE
Confidence 456999999999998888887763 345689988873 22 223333222111 113689999999999987
Q ss_pred cCC--CCCCCHHHHHhhccCcEEEeccCCCC---ccCHhhHh
Q psy14495 269 LSV--SGVLKKEMVLQMAKNPIILALANPLP---EILPEDIK 305 (766)
Q Consensus 269 ~S~--~g~ft~evv~~M~~~PiIfaLsNPt~---E~~pe~a~ 305 (766)
+.. ...|..++++ +.-.|-+..-.+| |+.|+-..
T Consensus 199 aT~s~~P~~~~~~l~---~G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 199 TTPSREPLLQAEDIQ---PGTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred ecCCCCceeCHHHcC---CCcEEEecCCCCcccccCCHHHHh
Confidence 643 5678888886 5777888875543 99987544
No 246
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=80.59 E-value=2.6 Score=46.58 Aligned_cols=90 Identities=20% Similarity=0.330 Sum_probs=57.4
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc--cccCCCCCCCcHHHHHhccc----cC---CCCHHHHhccCcE
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG--VLYKGRSELMDSNKARFIKD----TT---ARTLSDIIPNADI 265 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G--lv~~~r~~~l~~~k~~~a~~----~~---~~~L~e~i~~~~v 265 (766)
++|.|+|||+=|+++|..|.+.| ..=++|..|.+= -|..+|. + ..|..+ .+ ..+|.++++++|+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~---N---~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRE---N---PKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCc---C---ccccCCccCCcccccccCHHHHHhcCCE
Confidence 58999999999999999999988 222577766531 1112121 1 112221 11 3589999999965
Q ss_pred -EEecCCCCCCCHHHHHhhc----cCcEEEecc
Q psy14495 266 -FLGLSVSGVLKKEMVLQMA----KNPIILALA 293 (766)
Q Consensus 266 -liG~S~~g~ft~evv~~M~----~~PiIfaLs 293 (766)
+++++. -+.+++++.|. ++.+|.-+|
T Consensus 75 iv~avPs--~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 75 IVIAVPS--QALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred EEEECCh--HHHHHHHHHHhhhccCCCeEEEEe
Confidence 666655 36678888875 444554444
No 247
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=80.46 E-value=3.6 Score=41.04 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=45.5
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEE
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFL 267 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vli 267 (766)
|++.+|.|+|.|+-|-+.|.-|.+.|+. +++..++| =..+++.-+..-+..++.|+++.+|+++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~---V~Vglr~~---------s~s~~~A~~~Gf~v~~~~eAv~~aDvV~ 65 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVN---VIVGLREG---------SASWEKAKADGFEVMSVAEAVKKADVVM 65 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-E---EEEEE-TT---------CHHHHHHHHTT-ECCEHHHHHHC-SEEE
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCC---EEEEecCC---------CcCHHHHHHCCCeeccHHHHHhhCCEEE
Confidence 5788999999999999999999999985 66666543 1344444444445679999999999876
No 248
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.46 E-value=4.9 Score=42.56 Aligned_cols=68 Identities=10% Similarity=0.296 Sum_probs=48.6
Q ss_pred CCceEEEEC---cchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc-----C---CCCHHHHhc
Q psy14495 193 KDCKLVVSG---AGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT-----T---ARTLSDIIP 261 (766)
Q Consensus 193 ~d~~iv~~G---aG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~-----~---~~~L~e~i~ 261 (766)
...+||++. +|--| .+|+.++..|++ ++++|+.+ ..+++.-..+|... + ..||.|++.
T Consensus 3 ~~i~iVLVep~~~gNIG-~vARaMKNfGl~--eL~LV~Pr--------~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~ 71 (242)
T COG0565 3 ENIRIVLVEPSHPGNIG-SVARAMKNFGLS--ELRLVNPR--------AGLDEEARALAAGARDILENAKIVDTLEEALA 71 (242)
T ss_pred CccEEEEEcCCCCccHH-HHHHHHHhCCcc--eEEEECCC--------CCCCHHHHHHhccchhhhccCeeecCHHHHhc
Confidence 455777764 45555 578999999999 79999884 22444444444421 1 269999999
Q ss_pred cCcEEEecCC
Q psy14495 262 NADIFLGLSV 271 (766)
Q Consensus 262 ~~~vliG~S~ 271 (766)
++|.++|+|+
T Consensus 72 d~~~v~aTta 81 (242)
T COG0565 72 DCDLVVATTA 81 (242)
T ss_pred CCCEEEEecc
Confidence 9999999996
No 249
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=80.15 E-value=16 Score=40.82 Aligned_cols=112 Identities=10% Similarity=0.095 Sum_probs=72.0
Q ss_pred HHHHhhcCCCcEEe-cCCchhHHHHHHHHHHHHhHhC-CcCCCceEEEECcchhh--HHHHHHHHHcCCCCccEEEEcCC
Q psy14495 154 EKKLRNHMKIPVFH-DDQHGTAIIVGSAILNGLKLVK-KKMKDCKLVVSGAGAAA--LACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 154 l~~~~~~~~~~~fn-DD~qGTa~v~lA~ll~al~~~~-~~l~d~~iv~~GaG~ag--~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
++++.+...+||+| .|-...-.=+|+=++.-.+..| +++++.+|.++|-+.-+ -....++...|+. +.++-.+
T Consensus 114 ~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~---v~~~~P~ 190 (336)
T PRK03515 114 VETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLD---LRLVAPK 190 (336)
T ss_pred HHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCE---EEEECCc
Confidence 34443334699999 4445666677888887777766 47999999999986333 2223334456875 8888888
Q ss_pred ccccCCCCCCCcHHHHHhccccC-----CCCHHHHhccCcEEEecCC
Q psy14495 230 GVLYKGRSELMDSNKARFIKDTT-----ARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 230 Glv~~~r~~~l~~~k~~~a~~~~-----~~~L~e~i~~~~vliG~S~ 271 (766)
|+.-. +.+-+.-+.+++... ..++.|+++++||+.-.++
T Consensus 191 ~~~~~---~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd~W 234 (336)
T PRK03515 191 ACWPE---AALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTDVW 234 (336)
T ss_pred hhcCc---HHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCc
Confidence 77321 111111123343222 3689999999999998876
No 250
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=79.98 E-value=2.2 Score=36.02 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=24.4
Q ss_pred EECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 199 VSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 199 ~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
|+|||.+|+..|..|.+.|. ++.++|++-
T Consensus 1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY---RVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS---EEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCC---cEEEEecCc
Confidence 78999999999999999876 488888863
No 251
>PRK08374 homoserine dehydrogenase; Provisional
Probab=79.91 E-value=4.9 Score=44.65 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=59.1
Q ss_pred ceEEEECcchhhHHHHHHHHH--------cCCCCccEEEEcCCccccCCCCCCCcH---HHHHhcccc--------CCCC
Q psy14495 195 CKLVVSGAGAAALACLDLIID--------LGFPLQNIFVTDLAGVLYKGRSELMDS---NKARFIKDT--------TART 255 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~--------~g~~~~~i~~~D~~Glv~~~r~~~l~~---~k~~~a~~~--------~~~~ 255 (766)
.||.++|.|..|.+++++|.+ .|+..+=+-+.|++|-++..++-+++. ++..+..-. ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 689999999999999999875 465533355679999888755322222 222222100 1126
Q ss_pred HHHHhc--cCcEEEecCCCCCCCHHHHHh-hc-cCcEEE
Q psy14495 256 LSDIIP--NADIFLGLSVSGVLKKEMVLQ-MA-KNPIIL 290 (766)
Q Consensus 256 L~e~i~--~~~vliG~S~~g~ft~evv~~-M~-~~PiIf 290 (766)
+.|.++ .+||+|-++.+... .++++. +. ..++|.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a-~~~~~~al~~G~~VVt 120 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNA-HEWHLEALKEGKSVVT 120 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHH-HHHHHHHHhhCCcEEE
Confidence 778885 36999998864433 344433 33 466664
No 252
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=79.88 E-value=2.4 Score=40.60 Aligned_cols=88 Identities=20% Similarity=0.275 Sum_probs=49.6
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc---ccCCCCHHHHhccCcEEEec
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK---DTTARTLSDIIPNADIFLGL 269 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~---~~~~~~L~e~i~~~~vliG~ 269 (766)
...||-|+|||-.|..++..|.+.|.. |.-+- +|. ....+..+. .....++.|+++.+|+++ +
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~---v~~v~-------srs---~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~-i 74 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHE---VVGVY-------SRS---PASAERAAAFIGAGAILDLEEILRDADLVF-I 74 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSE---EEEES-------SCH---H-HHHHHHC--TT-----TTGGGCC-SEEE-E
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCe---EEEEE-------eCC---cccccccccccccccccccccccccCCEEE-E
Confidence 346999999999999999999999854 33222 231 112222222 223457889999999887 6
Q ss_pred CCCCCCCHHHHHhhcc------CcEEEeccC
Q psy14495 270 SVSGVLKKEMVLQMAK------NPIILALAN 294 (766)
Q Consensus 270 S~~g~ft~evv~~M~~------~PiIfaLsN 294 (766)
+.+..-=+++.+.++. ..||+=.|=
T Consensus 75 avpDdaI~~va~~La~~~~~~~g~iVvHtSG 105 (127)
T PF10727_consen 75 AVPDDAIAEVAEQLAQYGAWRPGQIVVHTSG 105 (127)
T ss_dssp -S-CCHHHHHHHHHHCC--S-TT-EEEES-S
T ss_pred EechHHHHHHHHHHHHhccCCCCcEEEECCC
Confidence 7666555677777663 345555443
No 253
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=79.60 E-value=2.1 Score=48.44 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=28.6
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+|+|+|||.||..+|..|.+.|++ +.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ---TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc---EEEEecC
Confidence 799999999999999999999987 8888874
No 254
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=79.48 E-value=4.6 Score=44.49 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=61.1
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc--CCCCHHHHhccCcEEEecCC-
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT--TARTLSDIIPNADIFLGLSV- 271 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~--~~~~L~e~i~~~~vliG~S~- 271 (766)
.||.|+|||..|..+|-+|...|+. +.+.|+|.+-=..++-.-+|.+.. +|-+.. ...+ .+.++++|++|=+.+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~-~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~-~~~~~~adivIitag~ 83 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIA-DELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGD-YSDCKDADLVVITAGA 83 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC-CEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCC-HHHhCCCCEEEEecCC
Confidence 4999999999999999999988874 369999973111111101122222 121111 1133 456899998764432
Q ss_pred ---CCC-----------CCHHHHHhhc---cCcEEEeccCCCCccCH
Q psy14495 272 ---SGV-----------LKKEMVLQMA---KNPIILALANPLPEILP 301 (766)
Q Consensus 272 ---~g~-----------ft~evv~~M~---~~PiIfaLsNPt~E~~p 301 (766)
+|. +=++++..+. ...+|+-.|||..-.+.
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~ 130 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTY 130 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHH
Confidence 331 1123344444 46799999999754443
No 255
>PRK06184 hypothetical protein; Provisional
Probab=79.48 E-value=2.2 Score=49.62 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=36.0
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccc-cCCCCCCCcH
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVL-YKGRSELMDS 242 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv-~~~r~~~l~~ 242 (766)
++..|+|+|||.+|+.+|-+|.+.|++ +.++|+.--. ...|...+++
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~ 49 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQP 49 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecH
Confidence 467899999999999999999999997 8999986433 2234334444
No 256
>PRK07236 hypothetical protein; Provisional
Probab=79.34 E-value=2.5 Score=47.23 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=31.3
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
++..+|+|+|||.||+.+|..|.+.|++ +.++|+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~ 38 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERS 38 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecC
Confidence 4568999999999999999999999987 8888875
No 257
>PRK07411 hypothetical protein; Validated
Probab=79.33 E-value=1.7 Score=49.27 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=36.1
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..+|++.||+|+|+|.-|.-++..|..+|+. +|.++|.+
T Consensus 33 q~~L~~~~VlivG~GGlG~~va~~La~~Gvg--~l~lvD~D 71 (390)
T PRK07411 33 QKRLKAASVLCIGTGGLGSPLLLYLAAAGIG--RIGIVDFD 71 (390)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHcCCC--EEEEECCC
Confidence 4568999999999999999999999999998 89999987
No 258
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=79.30 E-value=2.2 Score=47.89 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=28.7
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.|+|+|||.||..+|..|.+.|++ +.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 589999999999999999999987 9999986
No 259
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=79.23 E-value=3.2 Score=45.40 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=56.6
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCC--cH--HHHHhccccCCCCHHHHhccCcEE
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELM--DS--NKARFIKDTTARTLSDIIPNADIF 266 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l--~~--~k~~~a~~~~~~~L~e~i~~~~vl 266 (766)
+.+..||.|+|+|+-|..+|..|.+.|.. +.++++... ..-+...+ .. ....+ ......+-.+.....|++
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~---V~~~~r~~~-~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFD---VHFLLRSDY-EAVRENGLQVDSVHGDFHL-PPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCe---EEEEEeCCH-HHHHhCCeEEEeCCCCeee-cCceEEcchhhcCCCCEE
Confidence 34557999999999999999999998854 666665321 11010011 00 00000 000011122334566877
Q ss_pred EecCCCCCCCHHHHHhhc----cCcEEEeccCCC
Q psy14495 267 LGLSVSGVLKKEMVLQMA----KNPIILALANPL 296 (766)
Q Consensus 267 iG~S~~g~ft~evv~~M~----~~PiIfaLsNPt 296 (766)
| +.++..-+++.++.+. ++.+|..|-|--
T Consensus 77 i-lavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~ 109 (313)
T PRK06249 77 L-VGLKTTANALLAPLIPQVAAPDAKVLLLQNGL 109 (313)
T ss_pred E-EEecCCChHhHHHHHhhhcCCCCEEEEecCCC
Confidence 6 5554445677777775 466788888864
No 260
>PTZ00188 adrenodoxin reductase; Provisional
Probab=79.23 E-value=7.2 Score=45.63 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=30.7
Q ss_pred CCceEEEECcchhhHHHHHHH-HHcCCCCccEEEEcCC----ccccCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLI-IDLGFPLQNIFVTDLA----GVLYKG 235 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l-~~~g~~~~~i~~~D~~----Glv~~~ 235 (766)
+..||+|+|||.||+.+|..| .+.|.. +.|+|+. ||+..+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCCccEEEEe
Confidence 357999999999999999965 456754 8888886 555443
No 261
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=79.04 E-value=32 Score=38.33 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=69.5
Q ss_pred HHHHHhhcCCCcEEe-cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhH--HHHHHHHHcCCCCccEEEEcCC
Q psy14495 153 IEKKLRNHMKIPVFH-DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAAL--ACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 153 il~~~~~~~~~~~fn-DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~--gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.++++.+..++||+| .|-+..-.=+|+=++.-.+....++++.||+++|-+..++ ..+.++...|+. +.++=.+
T Consensus 113 ~~~~~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~---v~~~~P~ 189 (332)
T PRK04284 113 TVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMD---FHLVCPK 189 (332)
T ss_pred HHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCE---EEEECCc
Confidence 344444445699999 3334455566777777665523469999999999873232 223334456875 8888887
Q ss_pred ccccCCCCCCCcHHHHHhcccc-----CCCCHHHHhccCcEEEecCC
Q psy14495 230 GVLYKGRSELMDSNKARFIKDT-----TARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 230 Glv~~~r~~~l~~~k~~~a~~~-----~~~~L~e~i~~~~vliG~S~ 271 (766)
|+.-.. +-+...| .+++.. -..++.|+++++||+.-.++
T Consensus 190 ~~~~~~--~~~~~~~-~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w 233 (332)
T PRK04284 190 ELNPDD--ELLNKCK-EIAAETGGKITITDDIDEGVKGSDVIYTDVW 233 (332)
T ss_pred cccCCH--HHHHHHH-HHHHHcCCeEEEEcCHHHHhCCCCEEEECCc
Confidence 763221 1122222 333321 23689999999999988765
No 262
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=79.01 E-value=2.9 Score=48.04 Aligned_cols=115 Identities=17% Similarity=0.376 Sum_probs=62.8
Q ss_pred ceEEEECcchhhHHHHHH---HH-Hc-CCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc--C-----CCCHHHHhcc
Q psy14495 195 CKLVVSGAGAAALACLDL---II-DL-GFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT--T-----ARTLSDIIPN 262 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~---l~-~~-g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~--~-----~~~L~e~i~~ 262 (766)
.||+|+||||+ -.-++ |. .. .++-..|||+|-+ .+|.+.+...=+.+++.. + ..++.+|+++
T Consensus 1 ~KI~iIGgGS~--~tp~li~~l~~~~~~l~~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g 74 (425)
T cd05197 1 VKIAIIGGGSS--FTPELVSGLLKTPEELPISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID 74 (425)
T ss_pred CEEEEECCchH--hHHHHHHHHHcChhhCCCCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC
Confidence 48999999996 22233 22 22 4555689999964 333211212112222221 1 3689999999
Q ss_pred CcEEE------------------------ecCC---CCCCC--------HHHHHhhc---cCcEEEeccCCCCccCHhhH
Q psy14495 263 ADIFL------------------------GLSV---SGVLK--------KEMVLQMA---KNPIILALANPLPEILPEDI 304 (766)
Q Consensus 263 ~~vli------------------------G~S~---~g~ft--------~evv~~M~---~~PiIfaLsNPt~E~~pe~a 304 (766)
+|.+| |--+ +|.|. .++++.|. ++.+++-.|||...+|-. +
T Consensus 75 ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a-~ 153 (425)
T cd05197 75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEA-V 153 (425)
T ss_pred CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHH-H
Confidence 87653 2111 12221 25555554 689999999998544432 2
Q ss_pred hccc-CcEEEEcC
Q psy14495 305 KSVR-NDAIIATG 316 (766)
Q Consensus 305 ~~~~-~~ai~atG 316 (766)
++.. ..-+|++|
T Consensus 154 ~~~~p~~rviG~c 166 (425)
T cd05197 154 RRYVPPEKAVGLC 166 (425)
T ss_pred HHhCCCCcEEEEC
Confidence 2232 22455554
No 263
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=78.96 E-value=36 Score=37.92 Aligned_cols=109 Identities=14% Similarity=0.147 Sum_probs=66.1
Q ss_pred HHHHhhcCCCcEEe-cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHH----HHcCCCCccEEEEcC
Q psy14495 154 EKKLRNHMKIPVFH-DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLI----IDLGFPLQNIFVTDL 228 (766)
Q Consensus 154 l~~~~~~~~~~~fn-DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l----~~~g~~~~~i~~~D~ 228 (766)
++++.+..++||.| .|-.-.-.=+|+=++.-.+.. .+++..||+++|.+.-+ +++-+ ...|+. ++++-.
T Consensus 115 ~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~-g~l~g~~va~vGd~~~~--v~~Sl~~~~~~~g~~---v~~~~P 188 (331)
T PRK02102 115 VEELAKYSGVPVWNGLTDEWHPTQMLADFMTMKEHF-GPLKGLKLAYVGDGRNN--MANSLMVGGAKLGMD---VRICAP 188 (331)
T ss_pred HHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHh-CCCCCCEEEEECCCccc--HHHHHHHHHHHcCCE---EEEECC
Confidence 33333334699999 222444555667766655554 46999999999998433 44443 456765 888888
Q ss_pred CccccCCCCCCCcHHHHHhccccC-----CCCHHHHhccCcEEEecCC
Q psy14495 229 AGVLYKGRSELMDSNKARFIKDTT-----ARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 229 ~Glv~~~r~~~l~~~k~~~a~~~~-----~~~L~e~i~~~~vliG~S~ 271 (766)
+|+.-. +..-+.-+.+++... ..++.++++++||+.-.++
T Consensus 189 ~~~~~~---~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w 233 (331)
T PRK02102 189 KELWPE---EELVALAREIAKETGAKITITEDPEEAVKGADVIYTDVW 233 (331)
T ss_pred cccccC---HHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 876322 111111122333221 3689999999999987654
No 264
>PRK07877 hypothetical protein; Provisional
Probab=78.75 E-value=3.5 Score=50.32 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=65.7
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCC-CCccEEEEcCCccccCC--CC----CCCcHHHHHhcccc----C------
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGF-PLQNIFVTDLAGVLYKG--RS----ELMDSNKARFIKDT----T------ 252 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~-~~~~i~~~D~~Glv~~~--r~----~~l~~~k~~~a~~~----~------ 252 (766)
.+|++.||+|+|+| .|..+|..|...|+ - +|.++|-+=+=.++ |. .++-..|..-|++. |
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG--~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~ 179 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCG--ELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVE 179 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCC--eEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEE
Confidence 46889999999999 89899999999996 6 79999987432211 10 12333344433321 1
Q ss_pred -------CCCHHHHhccCcEEEecCCCCCCCHHHHHhhc---cCcEEEecc
Q psy14495 253 -------ARTLSDIIPNADIFLGLSVSGVLKKEMVLQMA---KNPIILALA 293 (766)
Q Consensus 253 -------~~~L~e~i~~~~vliG~S~~g~ft~evv~~M~---~~PiIfaLs 293 (766)
..++.+.++++|++|-+.- ..=++-++...+ ..|.|++.+
T Consensus 180 ~~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 180 VFTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred EEeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 1357777888899987764 222334444444 689988875
No 265
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=78.72 E-value=4.8 Score=44.70 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=53.4
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecC
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLS 270 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S 270 (766)
.|++.+|.|+|.|+.|-++|..|.+.|+. +++.++.+ ++ .....+ .+ .....++.|+++.+|+++ +.
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~---Vvv~~r~~----~~--s~~~A~-~~--G~~~~s~~eaa~~ADVVv-La 80 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVD---VVVGLREG----SK--SWKKAE-AD--GFEVLTVAEAAKWADVIM-IL 80 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCE---EEEEECCc----hh--hHHHHH-HC--CCeeCCHHHHHhcCCEEE-Ec
Confidence 36788999999999999999999999984 66666532 11 111111 11 112347999999999865 44
Q ss_pred CCC-----CCCHHHHHhhccCcEE
Q psy14495 271 VSG-----VLKKEMVLQMAKNPII 289 (766)
Q Consensus 271 ~~g-----~ft~evv~~M~~~PiI 289 (766)
.|. ++.+++...|.+..+|
T Consensus 81 VPd~~~~~V~~~~I~~~Lk~g~iL 104 (330)
T PRK05479 81 LPDEVQAEVYEEEIEPNLKEGAAL 104 (330)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEE
Confidence 332 2223344444455555
No 266
>PRK06847 hypothetical protein; Provisional
Probab=78.69 E-value=2.6 Score=46.63 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=29.1
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..+|+|+|||.||+..|.+|.+.|++ +.++++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC---EEEEecC
Confidence 45899999999999999999999987 7888764
No 267
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=78.64 E-value=2.4 Score=49.11 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=30.1
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+....+|+|+|||+||+..|..|.+.|++ +.++++.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~ 42 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHT---VVVFERE 42 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecC
Confidence 34567999999999999999999999975 6666664
No 268
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=78.33 E-value=3.2 Score=46.29 Aligned_cols=88 Identities=11% Similarity=0.230 Sum_probs=49.4
Q ss_pred eEEEECcchhhHHHHHHHHHcCCC-C----ccEEEEcCCccccCCCC-CCCcHH--HHHhcc----ccC---CCCHHHHh
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFP-L----QNIFVTDLAGVLYKGRS-ELMDSN--KARFIK----DTT---ARTLSDII 260 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~-~----~~i~~~D~~Glv~~~r~-~~l~~~--k~~~a~----~~~---~~~L~e~i 260 (766)
||.|+|||+-|+++|..|.+.|.. + .++.|..++..+....- +.++.. ...|.. ..+ ..+|.+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 689999999999999999987721 1 23444443221110000 001100 011111 111 25799999
Q ss_pred ccCcEEEecCCCCCCCHHHHHhhc
Q psy14495 261 PNADIFLGLSVSGVLKKEMVLQMA 284 (766)
Q Consensus 261 ~~~~vliG~S~~g~ft~evv~~M~ 284 (766)
+++|++| ++.|-.+-+++++.+.
T Consensus 81 ~~ADiII-lAVPs~~i~~vl~~l~ 103 (342)
T TIGR03376 81 KGADILV-FVIPHQFLEGICKQLK 103 (342)
T ss_pred hcCCEEE-EECChHHHHHHHHHHH
Confidence 9998755 4444456677777776
No 269
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=78.26 E-value=2.4 Score=47.91 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=30.4
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl 231 (766)
+-.|+|+|||.||..+|..|.+.|++ +.++|++..
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~ 37 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSE 37 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCC
Confidence 34699999999999999999999976 888888644
No 270
>PRK08163 salicylate hydroxylase; Provisional
Probab=78.15 E-value=2.6 Score=47.02 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=30.0
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..+|+|+|||.||+..|-.|.+.|++ +.++|+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~ 36 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIK---VKLLEQA 36 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeC
Confidence 46899999999999999999999987 8888885
No 271
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=78.13 E-value=6.3 Score=43.45 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=43.5
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~ 271 (766)
|++.||.|+|+|.-|-++|.-|.+.|+. +++.+..+ .+.+...+ .+ .....++.|+++.+|+++ +..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~---Viv~~~~~------~~~~~~a~-~~--Gv~~~s~~ea~~~ADiVv-LaV 67 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN---VIVGLRKG------GASWKKAT-ED--GFKVGTVEEAIPQADLIM-NLL 67 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe---EEEEECcC------hhhHHHHH-HC--CCEECCHHHHHhcCCEEE-EeC
Confidence 5678999999999999999999999974 54444321 01122221 11 112245888899998765 444
No 272
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=78.08 E-value=2.4 Score=45.60 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=28.5
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.|+|+|||-||+.+|..|.++|.+ +.++|+-
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGRE---VTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcE---EEEEEcC
Confidence 489999999999999999999988 8888875
No 273
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=77.75 E-value=2.5 Score=45.05 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=30.0
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+..|+|+|||.||+.+|..+.+.|++ +.++|++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~ 57 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERK 57 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCe---EEEEecC
Confidence 356899999999999999999999986 8888875
No 274
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=77.65 E-value=2.9 Score=47.08 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=31.0
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
+..||||+|+|.||+.+|+.|.+.|.+ -+|.|+|..-
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~-~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFT-GELHLFSDER 38 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCC-CCEEEeCCCC
Confidence 457899999999999999999988743 3699998753
No 275
>PRK09126 hypothetical protein; Provisional
Probab=77.58 E-value=2.7 Score=46.84 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=29.8
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+..|+|+|||.||+.+|..|.+.|++ +.++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCC
Confidence 46799999999999999999999987 8888875
No 276
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.58 E-value=10 Score=42.05 Aligned_cols=105 Identities=19% Similarity=0.258 Sum_probs=62.5
Q ss_pred ceEEEECc-chhhHHHHHHHHHcCCCC----ccEEEEcCCccc--cCCCCCCCcHHHHHhccc-cCCCCHHHHhccCcEE
Q psy14495 195 CKLVVSGA-GAAALACLDLIIDLGFPL----QNIFVTDLAGVL--YKGRSELMDSNKARFIKD-TTARTLSDIIPNADIF 266 (766)
Q Consensus 195 ~~iv~~Ga-G~ag~gia~~l~~~g~~~----~~i~~~D~~Glv--~~~r~~~l~~~k~~~a~~-~~~~~L~e~i~~~~vl 266 (766)
.||+|.|| |.-|..++..|...|+-. ..++++|.+.-. ..+..-++.+...++-.+ ....++.++++++|++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 47999999 999999999999877642 379999985421 111101122211122111 1236788999999987
Q ss_pred EecCC----CCCCC------------HHHHHhhc----cCcEEEeccCCCCccC
Q psy14495 267 LGLSV----SGVLK------------KEMVLQMA----KNPIILALANPLPEIL 300 (766)
Q Consensus 267 iG~S~----~g~ft------------~evv~~M~----~~PiIfaLsNPt~E~~ 300 (766)
|=+.+ +| -| +++.+.+. +.-||+-.|||..-.|
T Consensus 83 I~tAG~~~~~~-~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t 135 (325)
T cd01336 83 ILVGAMPRKEG-MERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNA 135 (325)
T ss_pred EEeCCcCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHH
Confidence 63332 23 22 33333443 3668888999864333
No 277
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=77.45 E-value=2.9 Score=42.10 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=26.7
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
||.|+|||..|.+||.++...|.. +.++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~---V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE---VTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE---EEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 689999999999999999999976 9999985
No 278
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=77.39 E-value=2.7 Score=45.96 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=30.6
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
||+++|+|.-|.-+|+.|...|+. +|.++|.+=
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg--~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVR--HITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCE
Confidence 689999999999999999999998 899999863
No 279
>PRK05442 malate dehydrogenase; Provisional
Probab=77.39 E-value=6.6 Score=43.51 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=62.2
Q ss_pred ceEEEECc-chhhHHHHHHHHHcCCCC----ccEEEEcCCccc--cCCCCCCCcHHHHHhccccC-CCCHHHHhccCcEE
Q psy14495 195 CKLVVSGA-GAAALACLDLIIDLGFPL----QNIFVTDLAGVL--YKGRSELMDSNKARFIKDTT-ARTLSDIIPNADIF 266 (766)
Q Consensus 195 ~~iv~~Ga-G~ag~gia~~l~~~g~~~----~~i~~~D~~Glv--~~~r~~~l~~~k~~~a~~~~-~~~L~e~i~~~~vl 266 (766)
.||.|+|| |..|..+|-.|...|+-. ..+.|+|.+.-. .++-.-+|.+...++-+... ..+..+.++++|++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 39999998 999999999888777642 279999985311 11111134444334433211 24677889999986
Q ss_pred Eec---CC-CCC-----------CCHHHHHhhc----cCcEEEeccCCCC
Q psy14495 267 LGL---SV-SGV-----------LKKEMVLQMA----KNPIILALANPLP 297 (766)
Q Consensus 267 iG~---S~-~g~-----------ft~evv~~M~----~~PiIfaLsNPt~ 297 (766)
|=+ .. +|- +-+++.+.+. +..+|+-.|||.-
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 134 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN 134 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence 622 22 441 1122333333 4779999999964
No 280
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=77.37 E-value=1.4 Score=46.08 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=44.8
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHH-Hhc-c-----ccCCCCHHHH-hccCcEE
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKA-RFI-K-----DTTARTLSDI-IPNADIF 266 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~-~~a-~-----~~~~~~L~e~-i~~~~vl 266 (766)
.+|+|+|+|..|..+|+.|.+.|-. +.++|.+--. ...+.. .+. + .++...|+++ +.++|++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~---Vv~Id~d~~~-------~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~v 70 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN---VVLIDRDEER-------VEEFLADELDTHVVIGDATDEDVLEEAGIDDADAV 70 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc---eEEEEcCHHH-------HHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEE
Confidence 3799999999999999999999855 8888884211 111111 111 1 2344567777 7777888
Q ss_pred EecCC
Q psy14495 267 LGLSV 271 (766)
Q Consensus 267 iG~S~ 271 (766)
+-++.
T Consensus 71 va~t~ 75 (225)
T COG0569 71 VAATG 75 (225)
T ss_pred EEeeC
Confidence 76555
No 281
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=77.33 E-value=2.2 Score=46.34 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=35.6
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
++|++.||+++|+|.-|.-||..|..+|+. +|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg--~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVK--SVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC
Confidence 468899999999999999999999999998 89999997
No 282
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.16 E-value=3.3 Score=45.04 Aligned_cols=79 Identities=16% Similarity=0.296 Sum_probs=50.2
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHh----c-------------cccCCCCHH
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARF----I-------------KDTTARTLS 257 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~----a-------------~~~~~~~L~ 257 (766)
+||.|+|+|..|.++|..|...|.. ++++|.+- +.+...+... . +-.-..++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~---V~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 74 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQ---VVLIDVME-------GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLA 74 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH-------HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHH
Confidence 4799999999999999999998864 89998631 1122222110 0 001124678
Q ss_pred HHhccCcEEEecCCCCC--CCHHHHHhhc
Q psy14495 258 DIIPNADIFLGLSVSGV--LKKEMVLQMA 284 (766)
Q Consensus 258 e~i~~~~vliG~S~~g~--ft~evv~~M~ 284 (766)
++++.+|++| ++.+.. ..+++++...
T Consensus 75 ~~~~~aDlVi-~av~~~~~~~~~v~~~l~ 102 (311)
T PRK06130 75 AAVSGADLVI-EAVPEKLELKRDVFARLD 102 (311)
T ss_pred HHhccCCEEE-EeccCcHHHHHHHHHHHH
Confidence 8899999876 444322 3556665554
No 283
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=76.51 E-value=7.1 Score=42.49 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=68.1
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHH-HHhccc---cCCCCHHHHhccCcEEEecC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNK-ARFIKD---TTARTLSDIIPNADIFLGLS 270 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k-~~~a~~---~~~~~L~e~i~~~~vliG~S 270 (766)
.||-|+|-|..|..+|.-|.++|.. ++++|+ ++.| .++++. ....+..|+++.+|++|=+=
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~---v~v~~r------------~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHE---VTVYNR------------TPEKAAELLAAAGATVAASPAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCE---EEEEeC------------ChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEec
Confidence 3799999999999999999999976 777776 2333 344432 23467899999999987432
Q ss_pred CCC------CCC-HHHHHhhccCcEEEeccCCCCccCHhhHh
Q psy14495 271 VSG------VLK-KEMVLQMAKNPIILALANPLPEILPEDIK 305 (766)
Q Consensus 271 ~~g------~ft-~evv~~M~~~PiIfaLsNPt~E~~pe~a~ 305 (766)
..+ .|- ..+++.|.+.-++.=+|.=.|+.+-+.+-
T Consensus 66 ~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~ 107 (286)
T COG2084 66 PDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAA 107 (286)
T ss_pred CCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHH
Confidence 211 232 45667777899999999866766655443
No 284
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=76.38 E-value=3.1 Score=43.57 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=27.2
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+--++|+|||+||+.+|..|.+.|++ +.+++++
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~ 49 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERK 49 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS----EEEEESS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCe---EEEEecC
Confidence 455799999999999999999999987 8888876
No 285
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=76.22 E-value=3.2 Score=43.87 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=30.6
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
||+++|+|.-|.-++..|...|+. +|.++|.+=
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg--~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFG--QIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCE
Confidence 689999999999999999999997 899999974
No 286
>PRK06475 salicylate hydroxylase; Provisional
Probab=76.09 E-value=2.9 Score=47.04 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=29.0
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+||+|+|||.||+..|-.|.+.|++ +.++++.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~ 34 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKA 34 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecC
Confidence 7999999999999999999999987 7778874
No 287
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=75.97 E-value=6.3 Score=43.63 Aligned_cols=102 Identities=16% Similarity=0.236 Sum_probs=60.7
Q ss_pred ceEEEECc-chhhHHHHHHHHHcCCC----CccEEEEcCCccc--cCCCCCCCcHHHHHhccccC-CCCHHHHhccCcEE
Q psy14495 195 CKLVVSGA-GAAALACLDLIIDLGFP----LQNIFVTDLAGVL--YKGRSELMDSNKARFIKDTT-ARTLSDIIPNADIF 266 (766)
Q Consensus 195 ~~iv~~Ga-G~ag~gia~~l~~~g~~----~~~i~~~D~~Glv--~~~r~~~l~~~k~~~a~~~~-~~~L~e~i~~~~vl 266 (766)
.||.|+|| |..|..+|-.|...|+- ...+.|+|.+.-. .++..-+|.+...++.+... ..+..+.++++|++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 99999999999887763 1279999985311 11111123332222222111 14677889999987
Q ss_pred EecCC----CCCCCH------------HHHHhhc---c-CcEEEeccCCCC
Q psy14495 267 LGLSV----SGVLKK------------EMVLQMA---K-NPIILALANPLP 297 (766)
Q Consensus 267 iG~S~----~g~ft~------------evv~~M~---~-~PiIfaLsNPt~ 297 (766)
|=+.+ +| -|+ ++++.+. + .-||+--|||.-
T Consensus 84 VitAG~~~k~g-~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 133 (323)
T TIGR01759 84 LLVGAFPRKPG-MERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN 133 (323)
T ss_pred EEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 63322 34 222 2333333 3 668888899963
No 288
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=75.92 E-value=6.3 Score=38.93 Aligned_cols=77 Identities=17% Similarity=0.309 Sum_probs=49.6
Q ss_pred CCceEEEECc--chhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc----CCCCHHHHhccCcEE
Q psy14495 193 KDCKLVVSGA--GAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT----TARTLSDIIPNADIF 266 (766)
Q Consensus 193 ~d~~iv~~Ga--G~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~----~~~~L~e~i~~~~vl 266 (766)
+..||+++|= +...-..+.++...|+. ++++-.+|+-+....+-+...++.+.+.. -..++.|+++++||+
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~---~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvv 77 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGME---VVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVV 77 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSE---EEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCE---EEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEE
Confidence 3579999995 34444555666677866 99999999765432112333333333321 136899999999999
Q ss_pred EecCCC
Q psy14495 267 LGLSVS 272 (766)
Q Consensus 267 iG~S~~ 272 (766)
+-.+..
T Consensus 78 y~~~~~ 83 (158)
T PF00185_consen 78 YTDRWQ 83 (158)
T ss_dssp EEESSS
T ss_pred EEcCcc
Confidence 988863
No 289
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=75.83 E-value=5 Score=47.37 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=32.7
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
+.++++.+++|+|||.+|-+++..|.+.|. +++++|+
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~~G~---~V~i~nR 410 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKEKGA---RVVIANR 410 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEcC
Confidence 446888999999999999999999999996 4998887
No 290
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=75.74 E-value=8.3 Score=48.60 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=32.6
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
++-+..||+|+|+|.||+.+|..|...|.. +.++|..
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~ 415 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGL 415 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccc
Confidence 345778999999999999999999999976 9999974
No 291
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=75.57 E-value=3.3 Score=47.73 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=32.0
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
+..+++|+|||.+|+++|.-|.++|++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccC
Confidence 456899999999999999999999998 488888874
No 292
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=75.03 E-value=35 Score=38.06 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=66.0
Q ss_pred CCCcEEe-cCCchhHHHHHHHHHHHHhHhC--CcCCCceEEEECcchhhHHHHHHH----HHcCCCCccEEEEcCCcccc
Q psy14495 161 MKIPVFH-DDQHGTAIIVGSAILNGLKLVK--KKMKDCKLVVSGAGAAALACLDLI----IDLGFPLQNIFVTDLAGVLY 233 (766)
Q Consensus 161 ~~~~~fn-DD~qGTa~v~lA~ll~al~~~~--~~l~d~~iv~~GaG~ag~gia~~l----~~~g~~~~~i~~~D~~Glv~ 233 (766)
.++||.| +|-+..-.=+|+=++.-.+..| +++++.||+++|-+. -+++.+ ...|+. ++++-.+|+--
T Consensus 118 ~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~---~v~~Sl~~~~~~~g~~---v~~~~P~~~~~ 191 (338)
T PRK02255 118 ATVPVINGMSDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDAT---QVCVSLMFIATKMGMD---FVHFGPKGYQL 191 (338)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCc---hHHHHHHHHHHhCCCE---EEEECCCcccc
Confidence 4699999 3334566777888888777765 479999999999974 244443 356764 88888888622
Q ss_pred CCCCCCCcHHHHHhcc-c---cCCCCHHHHhccCcEEEecCC
Q psy14495 234 KGRSELMDSNKARFIK-D---TTARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 234 ~~r~~~l~~~k~~~a~-~---~~~~~L~e~i~~~~vliG~S~ 271 (766)
.. +-++..+...++ . ....++.|+++++||+.-.++
T Consensus 192 ~~--~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~w 231 (338)
T PRK02255 192 PE--EHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDVW 231 (338)
T ss_pred CH--HHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEccc
Confidence 11 011122222211 1 123689999999999987553
No 293
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=74.71 E-value=3.6 Score=44.88 Aligned_cols=33 Identities=36% Similarity=0.491 Sum_probs=30.7
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
||+++|+|.-|.-++..|...|+. +|.++|.+=
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg--~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFR--NIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCE
Confidence 689999999999999999999998 999999873
No 294
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=74.68 E-value=3 Score=46.88 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=29.6
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+.+|+|+|||.||+.+|-.|.+.|.+ +.++|+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecC
Confidence 46899999999999999999999986 8888875
No 295
>PRK06753 hypothetical protein; Provisional
Probab=74.64 E-value=3.7 Score=45.46 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=27.8
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+|+|+|||.||+..|..|.+.|++ +.+++++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~ 32 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKN 32 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc---EEEEecC
Confidence 799999999999999999999987 7777764
No 296
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=74.59 E-value=3.3 Score=46.11 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=29.9
Q ss_pred CCceEEEECcchhhHHHHHHHHHc---CCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDL---GFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~---g~~~~~i~~~D~~ 229 (766)
+..+|+|+|||.||+.+|-+|.+. |++ +.++|++
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~---v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLP---VALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCE---EEEEeCC
Confidence 345799999999999999999998 987 8899984
No 297
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=74.46 E-value=4.5 Score=39.97 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=30.8
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
+|++.||+|+|+|..|.--++.|.+.|.. +.+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~---V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAF---VTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCE---EEEEcC
Confidence 58889999999999999999999998865 877754
No 298
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=74.26 E-value=3.7 Score=43.73 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=30.4
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.+..|+|+|||.||+.+|..+.+.|++ +.+++++.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~ 54 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSL 54 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCC
Confidence 466899999999999999999999965 88888763
No 299
>PRK06046 alanine dehydrogenase; Validated
Probab=74.20 E-value=24 Score=38.93 Aligned_cols=100 Identities=20% Similarity=0.228 Sum_probs=66.9
Q ss_pred CCceEEEECcchhhHHHHHHHHHc-CCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc-----CCCCHHHHhccCcEE
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDL-GFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT-----TARTLSDIIPNADIF 266 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~-g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~-----~~~~L~e~i~~~~vl 266 (766)
.-.++.|+|+|..|...++.+... ++ ++++++|++- +....+...+.+.. -..++.++++ +|++
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i--~~v~v~~r~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiV 197 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDL--EEVRVYDRTK-------SSAEKFVERMSSVVGCDVTVAEDIEEACD-CDIL 197 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCc--eEEEEECCCH-------HHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEE
Confidence 356999999999998888877653 44 4899888842 12333333332211 1357889887 9998
Q ss_pred EecCC--CCCCCHHHHHhhccCcEEEeccCCCC---ccCHhhHh
Q psy14495 267 LGLSV--SGVLKKEMVLQMAKNPIILALANPLP---EILPEDIK 305 (766)
Q Consensus 267 iG~S~--~g~ft~evv~~M~~~PiIfaLsNPt~---E~~pe~a~ 305 (766)
+-++. ...|..++++ +.-.|-++.-.+| |+.++-..
T Consensus 198 v~aTps~~P~~~~~~l~---~g~hV~~iGs~~p~~~El~~~~~~ 238 (326)
T PRK06046 198 VTTTPSRKPVVKAEWIK---EGTHINAIGADAPGKQELDPEILL 238 (326)
T ss_pred EEecCCCCcEecHHHcC---CCCEEEecCCCCCccccCCHHHHh
Confidence 87763 4578888775 3556777765443 99987443
No 300
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=73.72 E-value=4 Score=45.85 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=35.6
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC--ccccCCCCCCCcH
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA--GVLYKGRSELMDS 242 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~--Glv~~~r~~~l~~ 242 (766)
...|+|+|||.+|+..|-+|.+.|++ +.++++. .+...+|...+.+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~---V~l~E~~~~~~~~~~r~~~l~~ 49 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLD---VTLLERAPRELLERGRGIALSP 49 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCc---EEEEccCccccccCceeeeecH
Confidence 45799999999999999999999977 9999996 4444444333443
No 301
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=73.59 E-value=4.2 Score=45.46 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=29.5
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..+|+|+|||.+|...|-.|.+.|++ +.++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRS---VAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCC
Confidence 35799999999999999999999986 8999974
No 302
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.49 E-value=18 Score=44.40 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=29.4
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.||.|+|||..|.|||..+...|.+ ++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~---V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP---VIMKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe---EEEEeCC
Confidence 4899999999999999999999987 8999976
No 303
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=73.45 E-value=5.6 Score=42.72 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=46.2
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCCCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSGVL 275 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g~f 275 (766)
||.|+|+|..|..+|..|.+.|. +++++|++. +.+...+...+-. ...+..++++++|++| ++.|-..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~---~V~~~d~~~-------~~~~~a~~~g~~~-~~~~~~~~~~~aDlVi-lavp~~~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH---TVYGVSRRE-------STCERAIERGLVD-EASTDLSLLKDCDLVI-LALPIGL 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC---EEEEEECCH-------HHHHHHHHCCCcc-cccCCHhHhcCCCEEE-EcCCHHH
Confidence 79999999999999999999885 488888731 1122222111111 1112235677888776 5554333
Q ss_pred CHHHHHhhc
Q psy14495 276 KKEMVLQMA 284 (766)
Q Consensus 276 t~evv~~M~ 284 (766)
.+++++.+.
T Consensus 70 ~~~~~~~l~ 78 (279)
T PRK07417 70 LLPPSEQLI 78 (279)
T ss_pred HHHHHHHHH
Confidence 445555554
No 304
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.27 E-value=5.8 Score=47.09 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=30.9
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-...+|+|+|||.||+.+|..|.+.|.+ ++++|+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecC
Confidence 4567999999999999999999999974 8899974
No 305
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=73.17 E-value=4 Score=49.34 Aligned_cols=35 Identities=34% Similarity=0.556 Sum_probs=31.2
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-+..||+|+|+|.||+..|..|.+.|.+ +.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVA---VTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecC
Confidence 3577999999999999999999999975 8889875
No 306
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=73.06 E-value=4.2 Score=45.81 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=29.3
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.+|+|+|||..|+.+|..|.+.|.+ +.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~---V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQ---VTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 4899999999999999999998854 99999864
No 307
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=72.98 E-value=4 Score=47.16 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=29.0
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-.|+|+|||.||..+|..|.+.|++ +.++|++
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~ 71 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIE---TFLIERK 71 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEecC
Confidence 4799999999999999999999987 8888885
No 308
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=72.94 E-value=4 Score=43.96 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=28.5
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.|+|+|||-+|+.+|..|.+.|.+ +.++|+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~---V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHS---VTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSE---EEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCe---EEEEeec
Confidence 389999999999999999999875 9999997
No 309
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=72.94 E-value=4.9 Score=41.49 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=31.7
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+|++.|++|+|+|..|..-++.|.+.|.. +.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~---VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQ---LRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCE---EEEEcCC
Confidence 37788999999999999999999999965 8888873
No 310
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=72.89 E-value=4.9 Score=46.28 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=31.7
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+.+..+|+|+|+|.||+.+|..|.+.|.+ +.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHS---VTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecC
Confidence 45678999999999999999999999865 8999874
No 311
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=72.85 E-value=24 Score=41.37 Aligned_cols=142 Identities=17% Similarity=0.171 Sum_probs=77.5
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHH---------------Hhcc---ccCCCCH
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKA---------------RFIK---DTTARTL 256 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~---------------~~a~---~~~~~~L 256 (766)
.||.|+|+|..|.++|..|...|.. ++++|..- + .+...+. ++.. -.-..++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~---V~v~D~~~----~---~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~ 74 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGID---VAVFDPHP----E---AERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASL 74 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe---EEEEeCCH----H---HHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCH
Confidence 3799999999999999999999975 88888731 1 1111110 0000 0123578
Q ss_pred HHHhccCcEEEecCCCC--CCCHHHHHhh---ccCcEEEeccCCCCccCHhhHhcc---cCcEEEEcCCCCCcccccccc
Q psy14495 257 SDIIPNADIFLGLSVSG--VLKKEMVLQM---AKNPIILALANPLPEILPEDIKSV---RNDAIIATGRSDYPNQVNNVL 328 (766)
Q Consensus 257 ~e~i~~~~vliG~S~~g--~ft~evv~~M---~~~PiIfaLsNPt~E~~pe~a~~~---~~~ai~atG~~~~p~Q~NN~~ 328 (766)
.|+++++|++| .+.+. .+.+++.+.+ .+.-.|+..| |+-+++.+..+. .+++++. -+..|-
T Consensus 75 ~ea~~~aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~Ss--Tsgi~~s~l~~~~~~~~r~~~~--hP~nP~------ 143 (495)
T PRK07531 75 AEAVAGADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSS--TSGFLPSDLQEGMTHPERLFVA--HPYNPV------ 143 (495)
T ss_pred HHHhcCCCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCCcceEEEE--ecCCCc------
Confidence 99999999887 55432 2345554433 3333555544 443334433222 2344432 122221
Q ss_pred cccchhhhhhcccCCcCCHHHHHHHHHHHHhc
Q psy14495 329 CFPYIFRGALDSGATTITREMEIAAVHAIADL 360 (766)
Q Consensus 329 ~FPgi~~g~l~~~a~~i~~~m~~aAa~aLA~l 360 (766)
.++..+..++....+++.+..+..-+..+
T Consensus 144 ---~~~~Lvevv~g~~t~~e~~~~~~~~~~~l 172 (495)
T PRK07531 144 ---YLLPLVELVGGGKTSPETIRRAKEILREI 172 (495)
T ss_pred ---ccCceEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 12233455666666777776554433333
No 312
>PRK07233 hypothetical protein; Provisional
Probab=72.78 E-value=3.8 Score=46.03 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=28.4
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
||+|+|||-||+..|..|.+.|.+ +.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~---v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHE---VTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc---EEEEEeC
Confidence 689999999999999999999964 9999887
No 313
>PRK07045 putative monooxygenase; Reviewed
Probab=72.71 E-value=4.2 Score=45.38 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=29.0
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+|+|+|||.||+.+|-.|.+.|++ +.++++.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~ 37 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHS---VTVVERA 37 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCC
Confidence 5899999999999999999999986 8888875
No 314
>PRK08618 ornithine cyclodeaminase; Validated
Probab=72.66 E-value=25 Score=38.77 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=62.2
Q ss_pred CCceEEEECcchhhHHHHHHHHH-cCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc-----cCCCCHHHHhccCcEE
Q psy14495 193 KDCKLVVSGAGAAALACLDLIID-LGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD-----TTARTLSDIIPNADIF 266 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~-~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~-----~~~~~L~e~i~~~~vl 266 (766)
...++.|+|+|..|-..+..+.. .+++ +++++|+. .+| ...+...+... ....+++++++++|++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~--~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiV 196 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIE--RVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADEAIEEADII 196 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCcc--EEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEE
Confidence 45689999999999888877654 4654 89999884 222 23333333221 1246789999999998
Q ss_pred EecCC--CCCCCHHHHHhhccCcEEEeccCCCC---ccCHh
Q psy14495 267 LGLSV--SGVLKKEMVLQMAKNPIILALANPLP---EILPE 302 (766)
Q Consensus 267 iG~S~--~g~ft~evv~~M~~~PiIfaLsNPt~---E~~pe 302 (766)
+-++. ...|+ ++++ +.--|.++--.+| |+.++
T Consensus 197 i~aT~s~~p~i~-~~l~---~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 197 VTVTNAKTPVFS-EKLK---KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred EEccCCCCcchH-HhcC---CCcEEEecCCCCcccccCCHH
Confidence 86653 33455 5543 4566777755443 88874
No 315
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=72.65 E-value=4.1 Score=42.85 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=28.2
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.|+|+|||.||+..|..|.+.|++ +.++|+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLR---VLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe---EEEEeccC
Confidence 489999999999999999999986 88888753
No 316
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=72.46 E-value=24 Score=39.22 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
.+++|+|.|+|+.|..++.+.+..|.+ +++.+|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~--~Vi~~~~ 224 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGAS--QVVAVDL 224 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--cEEEEcC
Confidence 467999999999998888888888975 6887775
No 317
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=72.36 E-value=14 Score=40.07 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=36.2
Q ss_pred HHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 177 VGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 177 ~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
.++..+.+++..+. ...++++|.|+|+.|..++.++...|.. +++.+|+
T Consensus 148 ~~~ta~~~l~~~~~-~~g~~vlV~G~G~vG~~~~~~ak~~G~~--~vi~~~~ 196 (339)
T cd08239 148 GIGTAYHALRRVGV-SGRDTVLVVGAGPVGLGALMLARALGAE--DVIGVDP 196 (339)
T ss_pred hHHHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEECC
Confidence 33444556655443 3478999999999999888888889976 6887765
No 318
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=72.35 E-value=4.5 Score=51.08 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=34.9
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC----ccccCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA----GVLYKG 235 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~----Glv~~~ 235 (766)
-+..||+|+|+|.||+.+|..|.+.|.+ +.++|+. |++..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~~~GG~l~yG 348 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFHDLGGVLRYG 348 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCCCCCceEEcc
Confidence 4578999999999999999999999976 9999986 665543
No 319
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=72.28 E-value=23 Score=37.11 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=54.2
Q ss_pred HHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC----C-CCHHH
Q psy14495 184 GLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT----A-RTLSD 258 (766)
Q Consensus 184 al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~----~-~~L~e 258 (766)
+++. ..--+.++++|.|+|+.|..+..+....|.. +++.+++. +.|..++++.. . ....+
T Consensus 89 ~~~~-~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~--~vi~~~~~------------~~~~~~~~~~g~~~~~~~~~~~ 153 (277)
T cd08255 89 GVRD-AEPRLGERVAVVGLGLVGLLAAQLAKAAGAR--EVVGVDPD------------AARRELAEALGPADPVAADTAD 153 (277)
T ss_pred HHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--cEEEECCC------------HHHHHHHHHcCCCccccccchh
Confidence 3443 3334678999999999998988888888976 57776641 11222322111 0 00001
Q ss_pred Hh--ccCcEEEecCCCCCCCHHHHHhhccCcEEEeccCC
Q psy14495 259 II--PNADIFLGLSVSGVLKKEMVLQMAKNPIILALANP 295 (766)
Q Consensus 259 ~i--~~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsNP 295 (766)
.. +..|+++-.++.+..-++.++.|++.-.++-++.+
T Consensus 154 ~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 154 EIGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred hhcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEecc
Confidence 11 13578776554333445666666655555545443
No 320
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=72.11 E-value=1.6 Score=44.36 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=40.7
Q ss_pred eEEEECcchhhHHH---HHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc--C-----CCCHHHHhccCcE
Q psy14495 196 KLVVSGAGAAALAC---LDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT--T-----ARTLSDIIPNADI 265 (766)
Q Consensus 196 ~iv~~GaG~ag~gi---a~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~--~-----~~~L~e~i~~~~v 265 (766)
||+|+||||+-... .+++....++...|+|+|.+- +|-+.+...-+.+++.. + ..++.||++++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~----~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADf 76 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE----ERLEIVERLARRMVEEAGADLKVEATTDRREALEGADF 76 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH----HHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCE
Confidence 79999999996553 222223455556899999852 22111112223333322 1 2689999999998
Q ss_pred EEe
Q psy14495 266 FLG 268 (766)
Q Consensus 266 liG 268 (766)
+|=
T Consensus 77 Vi~ 79 (183)
T PF02056_consen 77 VIN 79 (183)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 321
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=71.99 E-value=17 Score=40.02 Aligned_cols=51 Identities=22% Similarity=0.166 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 176 IVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 176 v~lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
+..+..+.++...+..-..++++|.|+|+.|..++.++...|.+ +++.+++
T Consensus 160 ~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~--~v~~~~~ 210 (361)
T cd08231 160 CALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGAR--RVIVIDG 210 (361)
T ss_pred CHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcC
Confidence 34444555666666555788999999999999989888999985 5777765
No 322
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=71.97 E-value=5 Score=46.48 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=30.5
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
...+|+|+|+|.||+..|..|.+.|.+ +.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHK---VTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecC
Confidence 457999999999999999999999865 9999975
No 323
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=71.81 E-value=5.6 Score=40.92 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=31.0
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
+|++.+++|+|+|..|.-.++.|.+.|. +|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga---~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA---HIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEcC
Confidence 4788999999999999999999999984 5998865
No 324
>PRK07588 hypothetical protein; Provisional
Probab=71.74 E-value=4.7 Score=45.08 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=28.7
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+|+|+|+|.||+.+|-.|.+.|++ +.++++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~ 32 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE---PTLIERA 32 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc---eEEEeCC
Confidence 3799999999999999999999986 8888874
No 325
>KOG1370|consensus
Probab=71.74 E-value=9.2 Score=41.77 Aligned_cols=127 Identities=20% Similarity=0.276 Sum_probs=89.3
Q ss_pred CccccccccCCCCchHHHHHHHhhcCCCcEEecCCchhHHHHHHHHHHHH-hHhCCcCCCceEEEECcchhhHHHHHHHH
Q psy14495 136 TFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGL-KLVKKKMKDCKLVVSGAGAAALACLDLII 214 (766)
Q Consensus 136 ~~g~i~~ED~~~~~af~il~~~~~~~~~~~fnDD~qGTa~v~lA~ll~al-~~~~~~l~d~~iv~~GaG~ag~gia~~l~ 214 (766)
.+..||..|=-...=|.-|--.|+. + +-.+ |.|..=+....+|+.|=|-.|-|||..|.
T Consensus 175 ~VPAiNVNDSVTKsKFDnLygcreS--l------------------~DgikraTDvM~aGKv~Vv~GYGdVGKgCaqaLk 234 (434)
T KOG1370|consen 175 KVPAINVNDSVTKSKFDNLYGCRES--L------------------LDGIKRATDVMIAGKVAVVCGYGDVGKGCAQALK 234 (434)
T ss_pred ecceeeccchhhhhhccccccchhh--h------------------hhhhhhhhhheecccEEEEeccCccchhHHHHHh
Confidence 3445788887766666666555552 1 1222 35566677788999999999999999999
Q ss_pred HcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCC-CCCCCHHHHHhhccCcEEEecc
Q psy14495 215 DLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSV-SGVLKKEMVLQMAKNPIILALA 293 (766)
Q Consensus 215 ~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~-~g~ft~evv~~M~~~PiIfaLs 293 (766)
..|.. +++ |+- |.++.-|.. ....+..+|.|+++.+|+|+-+.+ ...++.+..+.|.+.-||--+-
T Consensus 235 g~g~~---Viv-------TEi--DPI~ALQAa-MeG~~V~tm~ea~~e~difVTtTGc~dii~~~H~~~mk~d~IvCN~G 301 (434)
T KOG1370|consen 235 GFGAR---VIV-------TEI--DPICALQAA-MEGYEVTTLEEAIREVDIFVTTTGCKDIITGEHFDQMKNDAIVCNIG 301 (434)
T ss_pred hcCcE---EEE-------ecc--CchHHHHHH-hhccEeeeHHHhhhcCCEEEEccCCcchhhHHHHHhCcCCcEEeccc
Confidence 98865 432 221 224433322 123456789999999999998877 7899999999999999987554
Q ss_pred CC
Q psy14495 294 NP 295 (766)
Q Consensus 294 NP 295 (766)
--
T Consensus 302 hf 303 (434)
T KOG1370|consen 302 HF 303 (434)
T ss_pred cc
Confidence 33
No 326
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.57 E-value=5.3 Score=46.26 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=34.1
Q ss_pred HhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 187 LVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 187 ~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..+.+++.++++|+|+|.+|+.+|+.|.+.|.+ ++++|.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~ 48 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLELGAR---VTVVDDG 48 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence 345567788999999999999999999999975 8888864
No 327
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=71.57 E-value=4.3 Score=46.44 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=29.1
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-.|+|+|||.||..+|..|.+.|++ +.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQ---VLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcC
Confidence 5799999999999999999999987 8888875
No 328
>PRK08013 oxidoreductase; Provisional
Probab=71.45 E-value=4.3 Score=45.70 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=29.4
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+..|+|+|||.+|+..|-.|.+.|++ +.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCC
Confidence 45799999999999999999999987 8888874
No 329
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=71.27 E-value=8.7 Score=47.05 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=52.7
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSGV 274 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g~ 274 (766)
.||.|+|+|..|..++..+.+.|.. .+++.+|++ . +.+...+..=+......++.++++++|++| ++.+-.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~-~~V~~~d~~----~---~~~~~a~~~g~~~~~~~~~~~~~~~aDvVi-lavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLA-REVVAVDRR----A---KSLELAVSLGVIDRGEEDLAEAVSGADVIV-LAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCC-CEEEEEECC----h---hHHHHHHHCCCCCcccCCHHHHhcCCCEEE-ECCCHH
Confidence 6899999999999999999998863 258888873 1 112221111011112346788888888776 555434
Q ss_pred CCHHHHHhhc
Q psy14495 275 LKKEMVLQMA 284 (766)
Q Consensus 275 ft~evv~~M~ 284 (766)
..+++++.+.
T Consensus 75 ~~~~vl~~l~ 84 (735)
T PRK14806 75 AMEKVLADLK 84 (735)
T ss_pred HHHHHHHHHH
Confidence 5677777776
No 330
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=71.27 E-value=4.9 Score=46.05 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=28.1
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
||||+|+|.||+.+|+.|.+.+- .-+|.|+|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~-~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDK-ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCC-CCCEEEEECC
Confidence 89999999999999999987642 2369999986
No 331
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=71.26 E-value=4 Score=45.61 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=30.0
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
...|+|+|||.+|+.+|-.|.+.|++ +.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~---v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLS---VALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCE---EEEEeCCC
Confidence 35799999999999999999999986 89999863
No 332
>PLN02852 ferredoxin-NADP+ reductase
Probab=71.19 E-value=4.3 Score=47.53 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=31.6
Q ss_pred hCCcCCCceEEEECcchhhHHHHHHHHH--cCCCCccEEEEcCC
Q psy14495 188 VKKKMKDCKLVVSGAGAAALACLDLIID--LGFPLQNIFVTDLA 229 (766)
Q Consensus 188 ~~~~l~d~~iv~~GaG~ag~gia~~l~~--~g~~~~~i~~~D~~ 229 (766)
....-...||+|+|||.||+.+|..|.+ .|. ++.|+|+.
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~---~Vtv~E~~ 60 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGA---RVDIIERL 60 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHHHhhCCCC---eEEEEecC
Confidence 3344556799999999999999999986 465 49999987
No 333
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=71.09 E-value=4.4 Score=45.12 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=27.8
Q ss_pred EEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 197 LVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 197 iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
|+|+|||.||+.+|..|.+.|.+ +.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~~g~~---v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGLR---VQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCe---EEEEccCC
Confidence 89999999999999999888886 99999763
No 334
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=71.07 E-value=35 Score=39.39 Aligned_cols=108 Identities=11% Similarity=0.130 Sum_probs=66.6
Q ss_pred HHHHhhcCCCcEEe--cCCchhHHHHHHHHHHHHhHhC---CcCCCceEEEECcch---hhHHHHHHHHHc-CCCCccEE
Q psy14495 154 EKKLRNHMKIPVFH--DDQHGTAIIVGSAILNGLKLVK---KKMKDCKLVVSGAGA---AALACLDLIIDL-GFPLQNIF 224 (766)
Q Consensus 154 l~~~~~~~~~~~fn--DD~qGTa~v~lA~ll~al~~~~---~~l~d~~iv~~GaG~---ag~gia~~l~~~-g~~~~~i~ 224 (766)
++++.+..++||.| |.-+-.-.=+||=++.-....| .++++.||+++|.+. ..-..+.++... |+. +.
T Consensus 196 ~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~---v~ 272 (429)
T PRK11891 196 VAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLK---FT 272 (429)
T ss_pred HHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCE---EE
Confidence 33443335799999 4234444556777777666654 359999999999973 222333333333 775 88
Q ss_pred EEcCCccccCCCCCCCcHHHHHhcccc-----CCCCHHHHhccCcEEEecCC
Q psy14495 225 VTDLAGVLYKGRSELMDSNKARFIKDT-----TARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 225 ~~D~~Glv~~~r~~~l~~~k~~~a~~~-----~~~~L~e~i~~~~vliG~S~ 271 (766)
++-.+|+- +++.-..+++.. -..++.|+++++||+.-.+.
T Consensus 273 l~~P~~~~-------~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 273 LVSPPTLE-------MPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred EECCCccc-------cCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 88888761 222212222221 23689999999999987653
No 335
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=70.77 E-value=17 Score=37.82 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=46.9
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCC-CCcHHHHHhccccCCCCHHHHhccCcEEEecCCCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSE-LMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSG 273 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~-~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g 273 (766)
.++.|+|+|.-|-++|+.+...|.. +.+--| |.+ .+....+.+--.-...+.+|+++.+||++ +..|-
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~e---V~igs~-------r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVv-LAVP~ 70 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHE---VIIGSS-------RGPKALAAAAAALGPLITGGSNEDAAALADVVV-LAVPF 70 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCe---EEEecC-------CChhHHHHHHHhhccccccCChHHHHhcCCEEE-EeccH
Confidence 3789999999999999999999854 332222 211 11111111111123468999999999877 55544
Q ss_pred CCCHHHHHh
Q psy14495 274 VLKKEMVLQ 282 (766)
Q Consensus 274 ~ft~evv~~ 282 (766)
...+++++.
T Consensus 71 ~a~~~v~~~ 79 (211)
T COG2085 71 EAIPDVLAE 79 (211)
T ss_pred HHHHhHHHH
Confidence 344455444
No 336
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=70.73 E-value=39 Score=37.06 Aligned_cols=180 Identities=18% Similarity=0.201 Sum_probs=104.2
Q ss_pred HHHHHHhCCCccccccccCCCCchHHHHHHHhhcCCCcEEe---cCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcc
Q psy14495 127 CDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFH---DDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAG 203 (766)
Q Consensus 127 v~~v~~~~p~~g~i~~ED~~~~~af~il~~~~~~~~~~~fn---DD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG 203 (766)
-++.+-+..-+-+|.+-.|+.. ..+-|-+|- .+||+| |+-|=|= +||=++.-....|+ |++.|++++|-|
T Consensus 90 ~DTArVLsr~~D~I~~R~~~~~-~ve~lA~~s---~VPViNgLtD~~HP~Q--~LADl~Ti~E~~g~-l~g~k~a~vGDg 162 (310)
T COG0078 90 KDTARVLSRMVDAIMIRGFSHE-TLEELAKYS---GVPVINGLTDEFHPCQ--ALADLMTIKEHFGS-LKGLKLAYVGDG 162 (310)
T ss_pred HHHHHHHHhhhheEEEecccHH-HHHHHHHhC---CCceEcccccccCcHH--HHHHHHHHHHhcCc-ccCcEEEEEcCc
Confidence 3444433334445666666533 333333443 699999 7778765 45666655555555 999999999999
Q ss_pred hhhHHHHHHHH----HcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC-----CCCHHHHhccCcEEEecCC--C
Q psy14495 204 AAALACLDLII----DLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT-----ARTLSDIIPNADIFLGLSV--S 272 (766)
Q Consensus 204 ~ag~gia~~l~----~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~-----~~~L~e~i~~~~vliG~S~--~ 272 (766)
--+++.|. ..|+. +.+.=.+|+=-. +.+-.+-+.+|+.+. ..+..|+++++||+.-=.+ -
T Consensus 163 ---NNv~nSl~~~~a~~G~d---v~ia~Pk~~~p~---~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvWvSM 233 (310)
T COG0078 163 ---NNVANSLLLAAAKLGMD---VRIATPKGYEPD---PEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVWVSM 233 (310)
T ss_pred ---chHHHHHHHHHHHhCCe---EEEECCCcCCcC---HHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCcccC
Confidence 35555554 35887 788888876321 123334444555432 2589999999999875443 1
Q ss_pred CCCCHHHHHhhccCcEEEeccCCCCccCHhhHhcccCcEEEEcCCCCCcccccccccccchhhhhhcccCCcCCHHHH
Q psy14495 273 GVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREME 350 (766)
Q Consensus 273 g~ft~evv~~M~~~PiIfaLsNPt~E~~pe~a~~~~~~ai~atG~~~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~ 350 (766)
|-..+..-+... | -|.--++++....++.++|| +.|.|.. +| ..|||+.|
T Consensus 234 Gee~e~~~~~~~-----~---~~~yQVn~~lm~~a~~~~if-------------mHCLPA~-rG------~EVTdeV~ 283 (310)
T COG0078 234 GEEAEAEERRIA-----F---LPPYQVNEELMALAGPDAIF-------------MHCLPAH-RG------EEVTDEVF 283 (310)
T ss_pred cchhhhHHHHHh-----h---CCCceeCHHHHhhcCCCeEE-------------EeCCCCC-CC------CccCHHHh
Confidence 322221211111 1 01125666654445557777 5556663 33 67888777
No 337
>PRK07538 hypothetical protein; Provisional
Probab=70.71 E-value=4.9 Score=45.45 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=28.4
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+|+|+|||.||+..|..|.+.|++ +.++|+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~ 32 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE---VVVFEAA 32 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEEcC
Confidence 799999999999999999999987 8888875
No 338
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=70.63 E-value=11 Score=41.71 Aligned_cols=137 Identities=13% Similarity=0.179 Sum_probs=83.0
Q ss_pred HHHHHhCCCcccc-ccccCC---CCchHHHHHHHhhcCCCcEEecCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECcc
Q psy14495 128 DIIFSLEPTFGGI-NLEDIK---APECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAG 203 (766)
Q Consensus 128 ~~v~~~~p~~g~i-~~ED~~---~~~af~il~~~~~~~~~~~fnDD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~GaG 203 (766)
+.++.++..- .| .++|+. .+--..-++||...+..|= -+.+.. ..++|++.||+ +|
T Consensus 23 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ry~r~l~l~~---~~~~~~-------------~Q~kL~~s~Vl---~G 82 (318)
T TIGR03603 23 EIVKKLVKGI-TISDEDAYENDLETLTKFNLITIIDNLTLKP---MLIVED-------------YQKHLKKSKVL---LG 82 (318)
T ss_pred HHHHHHhcCc-cccchHHHHhhhhccCHHHHHHHHHHhcCcc---ccCcHH-------------HHHHHhhCeee---cc
Confidence 3456666554 56 555552 2233456789987543322 111110 14568888998 88
Q ss_pred hhhHHHHHHHHHcCCCCccEEEEcCCcc-------ccCCCCCCCcHHHHHhcccc--------CCCCHHHHhccCcEEEe
Q psy14495 204 AAALACLDLIIDLGFPLQNIFVTDLAGV-------LYKGRSELMDSNKARFIKDT--------TARTLSDIIPNADIFLG 268 (766)
Q Consensus 204 ~ag~gia~~l~~~g~~~~~i~~~D~~Gl-------v~~~r~~~l~~~k~~~a~~~--------~~~~L~e~i~~~~vliG 268 (766)
.-|.-++..|.. |+. +|+++|.+=+ +++. +++-..|..-|++. +...+.+.+++.|++|=
T Consensus 83 GLGs~va~~La~-GVg--~L~ivD~D~Ve~SNL~~L~~~--~diG~~K~~~a~~~L~~lnp~v~i~~~~~li~~~DlVid 157 (318)
T TIGR03603 83 KFGANIAYNLCN-NVG--ALFISDKTYFQETAEIDLYSK--EFILKKDIRDLTSNLDALELTKNVDELKDLLKDYNYIII 157 (318)
T ss_pred cchHHHHHHHhC-CCC--EEEEEcCCEechhhHHHHhCh--hhcCcHHHHHHHHHHHHhCCCCEEeeHHHHhCCCCEEEE
Confidence 888889999999 998 8999998733 2221 23444555555421 23468888899998887
Q ss_pred cCCCCCCCHHHHHhhc------cCcEEEe
Q psy14495 269 LSVSGVLKKEMVLQMA------KNPIILA 291 (766)
Q Consensus 269 ~S~~g~ft~evv~~M~------~~PiIfa 291 (766)
++- -|....++.++ ..|.|++
T Consensus 158 ~tD--n~~~r~L~~iN~ac~~~~~PlV~g 184 (318)
T TIGR03603 158 CTE--HSNISLLRGLNKLSKETKKPNTIA 184 (318)
T ss_pred CCC--CccHhHHHHHHHHHHHHCCCEEEE
Confidence 663 35544444443 5787765
No 339
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=70.62 E-value=19 Score=39.14 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=59.5
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhcc---CcEEEecCCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPN---ADIFLGLSVS 272 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~---~~vliG~S~~ 272 (766)
||.|+|.|..|..+|+.|.+.|.. ++++|+.. +...+.+..- -....++.|+++. +|++|=+-..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~---v~v~dr~~-------~~~~~~~~~g--~~~~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHE---VVGYDRNP-------EAVEALAEEG--ATGADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCe---EEEEECCH-------HHHHHHHHCC--CeecCCHHHHHhhcCCCCEEEEEecC
Confidence 799999999999999999998854 88888741 1122221110 1123467787775 5665522222
Q ss_pred CCCCHHHHH----hhccCcEEEeccCCCCccCHh
Q psy14495 273 GVLKKEMVL----QMAKNPIILALANPLPEILPE 302 (766)
Q Consensus 273 g~ft~evv~----~M~~~PiIfaLsNPt~E~~pe 302 (766)
+...++++. .+.+..+|+-+|+-.|+.+-+
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~ 103 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIR 103 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHH
Confidence 334445543 444678999999877655543
No 340
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.52 E-value=7.1 Score=42.79 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=29.0
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
||.|+|+|..|..+|..|...|+. ..++++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~-~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLA-SEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC-CEEEEEECC
Confidence 799999999999999999998863 379999974
No 341
>PRK08244 hypothetical protein; Provisional
Probab=70.34 E-value=4.9 Score=46.65 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=29.1
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..|+|+|||.+|+..|-.|.+.|++ +.++|+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVK---TCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc---EEEEecC
Confidence 5799999999999999999999987 8888875
No 342
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=70.30 E-value=56 Score=36.83 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=65.3
Q ss_pred CCcEEe--cCCchhHHHHHHHHHHHHhHhCC--cCCCceEEEECcchh----hHHHH----HHHHHcCCCCccEEEEcCC
Q psy14495 162 KIPVFH--DDQHGTAIIVGSAILNGLKLVKK--KMKDCKLVVSGAGAA----ALACL----DLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 162 ~~~~fn--DD~qGTa~v~lA~ll~al~~~~~--~l~d~~iv~~GaG~a----g~gia----~~l~~~g~~~~~i~~~D~~ 229 (766)
.+||.| || ...-.=+|+=++.-....|. +|+..||+++|+|.- +..++ .++...|+. ++++-.+
T Consensus 135 ~vPVINa~~~-~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~---v~~~~P~ 210 (357)
T TIGR03316 135 RPPLVNLQCD-IDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMD---VTLAHPE 210 (357)
T ss_pred CCCEEECCCC-CCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCE---EEEECCC
Confidence 599999 22 24445567777766666664 478899999998652 22333 344567875 8888888
Q ss_pred ccccCCCCCCCcHHHHHhccccC-----CCCHHHHhccCcEEEecCC
Q psy14495 230 GVLYKGRSELMDSNKARFIKDTT-----ARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 230 Glv~~~r~~~l~~~k~~~a~~~~-----~~~L~e~i~~~~vliG~S~ 271 (766)
|+--. +.+-+.-+.+|+... ..++.|+++++||+.-.++
T Consensus 211 ~~~~~---~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w 254 (357)
T TIGR03316 211 GYHLL---PEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPKSW 254 (357)
T ss_pred cccCC---HHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCe
Confidence 76211 111111123444322 3689999999999998875
No 343
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=70.28 E-value=5.4 Score=44.76 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=30.0
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
..+|+|+|||.+|+..|-.|.+.|++ +.++|+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCC
Confidence 46899999999999999999999987 88888754
No 344
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=70.27 E-value=4.4 Score=47.88 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=23.6
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.||+|+|||.+|+..++.|.+.|+. +.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-E---EEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC---CeEEecC
Confidence 5899999999999999999999986 4555544
No 345
>PRK06834 hypothetical protein; Provisional
Probab=70.13 E-value=5.6 Score=46.41 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=31.2
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.+..|+|+|||.+|+..|-.|.+.|++ +.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVD---VAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCC
Confidence 467899999999999999999999987 88888764
No 346
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=70.11 E-value=5.2 Score=45.57 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=30.2
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccc
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVL 232 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv 232 (766)
+||||+|+|.||+.+|..|.+.|- .-+|.|+|++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcc
Confidence 389999999999999999988752 1279999987543
No 347
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=70.08 E-value=5 Score=50.77 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=31.3
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-+..||+|+|+|.||+.+|..|.+.|.+ +.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHP---VTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecc
Confidence 4667999999999999999999999975 8999875
No 348
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=70.01 E-value=4.5 Score=44.65 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=27.9
Q ss_pred EEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 197 LVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 197 iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
|+|+|||.||+.+|..|.+.|++ +.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLK---IALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCE---EEEEeCCC
Confidence 89999999999999999999976 88888864
No 349
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=69.98 E-value=17 Score=39.95 Aligned_cols=103 Identities=20% Similarity=0.163 Sum_probs=60.3
Q ss_pred ceEEEECc-chhhHHHHHHHHHcCCCCccEEEEcCCc---cccCCCCCCCcHHHHHhccccC---CCCHHHHhccCcEEE
Q psy14495 195 CKLVVSGA-GAAALACLDLIIDLGFPLQNIFVTDLAG---VLYKGRSELMDSNKARFIKDTT---ARTLSDIIPNADIFL 267 (766)
Q Consensus 195 ~~iv~~Ga-G~ag~gia~~l~~~g~~~~~i~~~D~~G---lv~~~r~~~l~~~k~~~a~~~~---~~~L~e~i~~~~vli 267 (766)
.||.|+|| |..|..++..|...|.. ..++++|.+- .+...+. ++.+.-..+-.... ..+ .+.++++|+.|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~-~~v~lvd~~~~~~~l~~~~~-dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiVi 77 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV-KEINLISRPKSLEKLKGLRL-DIYDALAAAGIDAEIKISSD-LSDVAGSDIVI 77 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-CEEEEEECcccccccccccc-hhhhchhccCCCcEEEECCC-HHHhCCCCEEE
Confidence 38999998 99999999999998864 2699999842 1111111 12111001111111 134 45699998754
Q ss_pred ecCC----CC-----------CCCHHHHHhhc---cCcEEEeccCCCCccC
Q psy14495 268 GLSV----SG-----------VLKKEMVLQMA---KNPIILALANPLPEIL 300 (766)
Q Consensus 268 G~S~----~g-----------~ft~evv~~M~---~~PiIfaLsNPt~E~~ 300 (766)
=+.+ +| .+-+++++.|. ...+|+--+||.+-.|
T Consensus 78 itag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t 128 (309)
T cd05294 78 ITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMT 128 (309)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHH
Confidence 3322 22 12344555554 5789999999976444
No 350
>PRK06185 hypothetical protein; Provisional
Probab=69.97 E-value=5.2 Score=44.87 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.7
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.+..|+|+|||.+|+.+|-.|.+.|++ +.++|++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 346799999999999999999999986 89999863
No 351
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=69.87 E-value=4.7 Score=44.76 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=28.7
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..|+|+|||.||+..|-.|.+.|++ +.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLR---VALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCe---EEEEecC
Confidence 4799999999999999999999975 8888875
No 352
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=69.83 E-value=45 Score=37.23 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=59.5
Q ss_pred CCCcEEe--cCCchhHHHHHHHHHHHHhHh---CCcCCCceEEEECcch-hhH--HHHHHHH-HcCCCCccEEEEcCCcc
Q psy14495 161 MKIPVFH--DDQHGTAIIVGSAILNGLKLV---KKKMKDCKLVVSGAGA-AAL--ACLDLII-DLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 161 ~~~~~fn--DD~qGTa~v~lA~ll~al~~~---~~~l~d~~iv~~GaG~-ag~--gia~~l~-~~g~~~~~i~~~D~~Gl 231 (766)
..+||.| |+.+-.-.=+|+=++.-.... |+++++.||+++|.+. ..+ ..+..+. ..|+. ++++-.+|+
T Consensus 121 ~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~---v~~~~P~~~ 197 (338)
T PRK08192 121 SRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVS---FTLVSPKEL 197 (338)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCE---EEEECCccc
Confidence 4699999 533333344555555544433 4679999999999974 122 2222222 23664 888888876
Q ss_pred ccCCCCCCCcHHHHHhccc-----cCCCCHHHHhccCcEEEecC
Q psy14495 232 LYKGRSELMDSNKARFIKD-----TTARTLSDIIPNADIFLGLS 270 (766)
Q Consensus 232 v~~~r~~~l~~~k~~~a~~-----~~~~~L~e~i~~~~vliG~S 270 (766)
- +++.-...++. +...++.|+++++||+.-.+
T Consensus 198 ~-------~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 234 (338)
T PRK08192 198 A-------MPDYVISDIENAGHKITITDQLEGNLDKADILYLTR 234 (338)
T ss_pred c-------CCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEcC
Confidence 2 12221112221 12368999999999999765
No 353
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=69.72 E-value=29 Score=38.20 Aligned_cols=101 Identities=22% Similarity=0.201 Sum_probs=58.0
Q ss_pred CceEEEECcchhhHHHHHHHHH-cCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc-c---cCCCCHHHHhccCcEEEe
Q psy14495 194 DCKLVVSGAGAAALACLDLIID-LGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK-D---TTARTLSDIIPNADIFLG 268 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~-~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~-~---~~~~~L~e~i~~~~vliG 268 (766)
-.++.|+|+|.-+...++.+.+ .+++ +|+++|+.- +....+...+.+ . ....+++++++++||++-
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~--~v~v~~r~~-------~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~t 198 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIK--EVRVYSRSP-------ERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVT 198 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--S--EEEEE-SSH-------HHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCce--EEEEEccCh-------hHHHHHHHhhccccccceeccchhhhcccCCEEEE
Confidence 3599999999999999888876 4544 899888731 123344444433 1 123689999999999998
Q ss_pred cCC--C--CCCCHHHHHhhccCcEEEeccCCCC---ccCHhhHhc
Q psy14495 269 LSV--S--GVLKKEMVLQMAKNPIILALANPLP---EILPEDIKS 306 (766)
Q Consensus 269 ~S~--~--g~ft~evv~~M~~~PiIfaLsNPt~---E~~pe~a~~ 306 (766)
+.. . -.|+.++++. .-.|-++.--+| |+.++....
T Consensus 199 aT~s~~~~P~~~~~~l~~---g~hi~~iGs~~~~~~El~~~~~~~ 240 (313)
T PF02423_consen 199 ATPSTTPAPVFDAEWLKP---GTHINAIGSYTPGMRELDDELLKR 240 (313)
T ss_dssp ----SSEEESB-GGGS-T---T-EEEE-S-SSTTBESB-HHHHHC
T ss_pred ccCCCCCCccccHHHcCC---CcEEEEecCCCCchhhcCHHHhcc
Confidence 754 3 4688777664 667777765443 887764443
No 354
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=69.71 E-value=4.4 Score=44.95 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=27.5
Q ss_pred EEEECcchhhHHHHHHHHHcC-CCCccEEEEcCC
Q psy14495 197 LVVSGAGAAALACLDLIIDLG-FPLQNIFVTDLA 229 (766)
Q Consensus 197 iv~~GaG~ag~gia~~l~~~g-~~~~~i~~~D~~ 229 (766)
|+|+|||.||+..|..|.+.| ++ +.++|+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~ 32 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIK---IALIEAN 32 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCce---EEEEeCC
Confidence 899999999999999999999 87 8888875
No 355
>PLN02602 lactate dehydrogenase
Probab=69.63 E-value=9.9 Score=42.60 Aligned_cols=103 Identities=17% Similarity=0.304 Sum_probs=61.2
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC---CCCHHHHhccCcEEEecCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT---ARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~---~~~L~e~i~~~~vliG~S~ 271 (766)
.||.|+|||..|..+|-.|...|+. +.+.|+|.+-=...+-.-+|.+.. +|-.... ..+.++ ++++|++|=+.+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~-~el~LiDi~~~~~~g~a~DL~~~~-~~~~~~~i~~~~dy~~-~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA-DELALVDVNPDKLRGEMLDLQHAA-AFLPRTKILASTDYAV-TAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC-CEEEEEeCCCchhhHHHHHHHhhh-hcCCCCEEEeCCCHHH-hCCCCEEEECCC
Confidence 4999999999999999999887874 379999973100111001233322 2222111 134444 889998773432
Q ss_pred ----CCCCCH------------HHHHhhc---cCcEEEeccCCCCccCH
Q psy14495 272 ----SGVLKK------------EMVLQMA---KNPIILALANPLPEILP 301 (766)
Q Consensus 272 ----~g~ft~------------evv~~M~---~~PiIfaLsNPt~E~~p 301 (766)
+| -|+ ++.+.+. .+-+|+-.|||.--.+.
T Consensus 115 ~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~ 162 (350)
T PLN02602 115 ARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTY 162 (350)
T ss_pred CCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHH
Confidence 34 222 3333333 58899999999754443
No 356
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=69.58 E-value=5 Score=50.80 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.5
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+..+|+|+|||.||+..|..|.+.|.+ +.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCe---EEEEecc
Confidence 457999999999999999999999975 9999975
No 357
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=69.57 E-value=5 Score=46.63 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=26.5
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
+||+|.|||-||+++|..|.++|.+ +.++-.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~---vt~~ea 31 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYD---VTLYEA 31 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCc---eEEEec
Confidence 5899999999999999999999987 554433
No 358
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=69.56 E-value=4.2 Score=45.64 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=26.3
Q ss_pred EEEECcchhhHHHHHHHHH--cCCCCccEEEEcCCcc
Q psy14495 197 LVVSGAGAAALACLDLIID--LGFPLQNIFVTDLAGV 231 (766)
Q Consensus 197 iv~~GaG~ag~gia~~l~~--~g~~~~~i~~~D~~Gl 231 (766)
|+|+|||.||..+|..|.+ .|. ++.++|++--
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~---~Vllid~~~~ 35 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL---SVLLIDPKPK 35 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC---EEEEEcCCcc
Confidence 7899999999999999944 454 4999998643
No 359
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=69.51 E-value=5.5 Score=45.12 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=27.3
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+|+|+|||-||+.+|..|.+.|.. .++.++...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~-~~V~vlEa~ 34 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPD-ADITLLEAS 34 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCC-CCEEEEEcC
Confidence 4799999999999999999998832 147777664
No 360
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=69.48 E-value=11 Score=41.32 Aligned_cols=93 Identities=22% Similarity=0.242 Sum_probs=54.5
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC-------CccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEE
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL-------AGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFL 267 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~-------~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vli 267 (766)
.||.|+|||+-|.-.+..|.+.| ..=.+|.-++ +||...+.. + ..+.. ....+-.+....+|++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~-~-----~~~~~-~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEG-G-----NFTTP-VVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCC-C-----ccccc-cccccChhhcCCCCEEE
Confidence 48999999999999999999999 3112333333 266554432 1 00111 00111223333567655
Q ss_pred ecCCCCCCCHHHHHhhc----cCcEEEeccCCC
Q psy14495 268 GLSVSGVLKKEMVLQMA----KNPIILALANPL 296 (766)
Q Consensus 268 G~S~~g~ft~evv~~M~----~~PiIfaLsNPt 296 (766)
+...--.++++++... +..+|..|-|=-
T Consensus 73 -v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~ 104 (307)
T COG1893 73 -VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGL 104 (307)
T ss_pred -EEeccccHHHHHHHhhhcCCCCcEEEEEeCCC
Confidence 3333347888888887 455677777754
No 361
>PRK05868 hypothetical protein; Validated
Probab=69.36 E-value=5.9 Score=44.32 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=28.9
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+|+|+|+|.+|+..|-.|.+.|++ +.++|++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~ 33 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERH 33 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCC
Confidence 3799999999999999999999987 8888885
No 362
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=69.30 E-value=14 Score=41.89 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=56.1
Q ss_pred HHHHHHhHhCCcCCCceEEEECcchhh-HHHHHHHHHcCCCC------------ccEEEEcCCccccCCCCCCCcHHHHH
Q psy14495 180 AILNGLKLVKKKMKDCKLVVSGAGAAA-LACLDLIIDLGFPL------------QNIFVTDLAGVLYKGRSELMDSNKAR 246 (766)
Q Consensus 180 ~ll~al~~~~~~l~d~~iv~~GaG~ag-~gia~~l~~~g~~~------------~~i~~~D~~Glv~~~r~~~l~~~k~~ 246 (766)
-++.|++...+...+.+++|+|.|.-- -.+.+++.+.|++. .+++++|.
T Consensus 248 ~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~------------------ 309 (425)
T PRK05749 248 LVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT------------------ 309 (425)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec------------------
Confidence 355666554444568899999999753 35777777788761 12222221
Q ss_pred hccccCCCCHHHHhccCcE-EEecCCCCCCCHHHHHhhc-cCcEEE
Q psy14495 247 FIKDTTARTLSDIIPNADI-FLGLSVSGVLKKEMVLQMA-KNPIIL 290 (766)
Q Consensus 247 ~a~~~~~~~L~e~i~~~~v-liG~S~~g~ft~evv~~M~-~~PiIf 290 (766)
...|.+....+|+ ++|-|....|..-+++.|+ ..|+|+
T Consensus 310 ------~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~ 349 (425)
T PRK05749 310 ------MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVIS 349 (425)
T ss_pred ------HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEE
Confidence 1236666777898 7887741124445899998 789986
No 363
>PRK12831 putative oxidoreductase; Provisional
Probab=69.29 E-value=5.7 Score=46.01 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=30.7
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-...+|+|+|+|.||+..|..|.+.|.+ +.++|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecC
Confidence 3567999999999999999999999975 8889864
No 364
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.24 E-value=14 Score=40.66 Aligned_cols=99 Identities=21% Similarity=0.422 Sum_probs=59.2
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccC---CCCHHHHhccCcEEEecC-
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT---ARTLSDIIPNADIFLGLS- 270 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~---~~~L~e~i~~~~vliG~S- 270 (766)
.||.|+|||..|..+|-.|...|+. ..+.|+|.+-=...+-.-+|.+.. +|..... ..+.++ ++++|++|=+.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~-~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLA-DELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TANSKVVIVTAG 80 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC-CEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCCCCEEEECCC
Confidence 4999999999999999999887764 379999973101111001233222 2322111 235554 89999875322
Q ss_pred --C-CCCCCH------------HHHHhhc---cCcEEEeccCCCC
Q psy14495 271 --V-SGVLKK------------EMVLQMA---KNPIILALANPLP 297 (766)
Q Consensus 271 --~-~g~ft~------------evv~~M~---~~PiIfaLsNPt~ 297 (766)
. +| -|+ ++.+.+. .+-+|+-.|||.-
T Consensus 81 ~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d 124 (312)
T cd05293 81 ARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD 124 (312)
T ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH
Confidence 2 34 233 2223332 6899999999975
No 365
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=69.16 E-value=6 Score=44.52 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=29.0
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+|+|+|||.+|+..|-.|.+.|++ +.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~ 34 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGID---NVILERQ 34 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCC---EEEEECC
Confidence 5799999999999999999999987 8888875
No 366
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=68.86 E-value=5 Score=44.78 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=29.5
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+..|+|+|+|.||+..|-.|.+.|++ +.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCC
Confidence 45899999999999999999999976 9999985
No 367
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=68.72 E-value=12 Score=42.27 Aligned_cols=76 Identities=17% Similarity=0.321 Sum_probs=54.8
Q ss_pred CCceEEEEC-cchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCC
Q psy14495 193 KDCKLVVSG-AGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 193 ~d~~iv~~G-aG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~ 271 (766)
...||.|+| .|..|-.+|..|.+.|.. ++++|++. . .+..++++++|++| ++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~---V~~~d~~~---------~-------------~~~~~~~~~aDlVi-lav 150 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQ---VRILEQDD---------W-------------DRAEDILADAGMVI-VSV 150 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCe---EEEeCCCc---------c-------------hhHHHHHhcCCEEE-EeC
Confidence 347899998 999999999999999965 88888731 1 13567788888877 666
Q ss_pred CCCCCHHHHHhhc---cCcEEEeccC
Q psy14495 272 SGVLKKEMVLQMA---KNPIILALAN 294 (766)
Q Consensus 272 ~g~ft~evv~~M~---~~PiIfaLsN 294 (766)
|-..+.++++... +.-||+-.+-
T Consensus 151 P~~~~~~~~~~l~~l~~~~iv~Dv~S 176 (374)
T PRK11199 151 PIHLTEEVIARLPPLPEDCILVDLTS 176 (374)
T ss_pred cHHHHHHHHHHHhCCCCCcEEEECCC
Confidence 5445677776654 3456665543
No 368
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=68.57 E-value=5.7 Score=45.38 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=29.8
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
+-.|||+|||+||+.+|..+.+.|.+ +.|+|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~---V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKK---VALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecCC
Confidence 34799999999999999999999954 99999863
No 369
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=68.45 E-value=5.7 Score=43.75 Aligned_cols=33 Identities=33% Similarity=0.513 Sum_probs=30.5
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
||+++|+|.-|.-++..|..+|+. +|.++|.+=
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg--~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFG--EIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCC--eEEEEcCCC
Confidence 689999999999999999999987 899999873
No 370
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=68.39 E-value=47 Score=36.99 Aligned_cols=128 Identities=25% Similarity=0.292 Sum_probs=78.6
Q ss_pred HHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHH-cCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc-----c
Q psy14495 178 GSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIID-LGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD-----T 251 (766)
Q Consensus 178 lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~-~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~-----~ 251 (766)
.|+.++|=++..++.+ ++.|+|+|.-+-..++.+.+ .++. +|+++|++- +....+-..+.+. .
T Consensus 116 AasavAa~~LA~~da~--~laiIGaG~qA~~ql~a~~~v~~~~--~I~i~~r~~-------~~~e~~a~~l~~~~~~~v~ 184 (330)
T COG2423 116 AASAVAAKYLARKDAS--TLAIIGAGAQARTQLEALKAVRDIR--EIRVYSRDP-------EAAEAFAARLRKRGGEAVG 184 (330)
T ss_pred HHHHHHHHHhccCCCc--EEEEECCcHHHHHHHHHHHhhCCcc--EEEEEcCCH-------HHHHHHHHHHHhhcCccce
Confidence 3445555555554333 68899999988777777665 3444 788777731 1122222222222 2
Q ss_pred CCCCHHHHhccCcEEEecCC--CCCCCHHHHHhhccCcEEEecc-C-CC-CccCHhhHhcccCcEEEEcCCCCCccccc
Q psy14495 252 TARTLSDIIPNADIFLGLSV--SGVLKKEMVLQMAKNPIILALA-N-PL-PEILPEDIKSVRNDAIIATGRSDYPNQVN 325 (766)
Q Consensus 252 ~~~~L~e~i~~~~vliG~S~--~g~ft~evv~~M~~~PiIfaLs-N-Pt-~E~~pe~a~~~~~~ai~atG~~~~p~Q~N 325 (766)
...+++++++++|+++.+.. .-.|+.++|+ +.--|-++. | |. .|+.||-..+. +.+|. +++.|+.
T Consensus 185 a~~s~~~av~~aDiIvt~T~s~~Pil~~~~l~---~G~hI~aiGad~p~k~Eld~e~l~ra--~~vvv----D~~~q~~ 254 (330)
T COG2423 185 AADSAEEAVEGADIVVTATPSTEPVLKAEWLK---PGTHINAIGADAPGKRELDPEVLARA--DRVVV----DSLEQTR 254 (330)
T ss_pred eccCHHHHhhcCCEEEEecCCCCCeecHhhcC---CCcEEEecCCCCcccccCCHHHHHhc--CeEEE----cCHHHhh
Confidence 35789999999999999863 5688888888 344444554 3 33 39999855444 34553 5555554
No 371
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=68.33 E-value=5.6 Score=44.76 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=29.4
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
...|+|+|||.+|+..|-.|.+.|++ +.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLR---IAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCE---EEEEcCC
Confidence 45799999999999999999999986 8888874
No 372
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=68.16 E-value=12 Score=44.17 Aligned_cols=106 Identities=16% Similarity=0.253 Sum_probs=70.2
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccc--cCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEec
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVL--YKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGL 269 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv--~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~ 269 (766)
..+--++|+|.|..|+|||+-+...|++ +.|++++-+- |++|..+|=+-=..|+...+..=..|++..
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~---v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~E------- 79 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLK---VALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAE------- 79 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCe---EEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHH-------
Confidence 3666899999999999999999999998 8999987654 344544455555566654332223444432
Q ss_pred CCCCCCCHHHHHhhc-----cCcEEEeccCCCCccCHhhHhcccCcEEEEcCCCCCcccccccccccchhhhhhccc
Q psy14495 270 SVSGVLKKEMVLQMA-----KNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGALDSG 341 (766)
Q Consensus 270 S~~g~ft~evv~~M~-----~~PiIfaLsNPt~E~~pe~a~~~~~~ai~atG~~~~p~Q~NN~~~FPgi~~g~l~~~ 341 (766)
.+++..++ +.|.+||..+- +.+ --+++.|+++...+++
T Consensus 80 -------r~vL~~~APH~v~p~~~~lp~~~~-----------~~~----------------~~~~~~gl~lyd~lag 122 (532)
T COG0578 80 -------REVLLRIAPHLVEPLPFLLPHLPG-----------LRD----------------AWLIRAGLFLYDHLAG 122 (532)
T ss_pred -------HHHHHHhCccccccCcCeEeccCC-----------ccc----------------chHHHHHHHHHHHhhc
Confidence 36666666 46677766542 100 1356778888888888
No 373
>KOG2304|consensus
Probab=68.08 E-value=5.2 Score=42.00 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=29.6
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-..|.|+|||-.|-|||+.....|++ +||+|++
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~---V~l~d~~ 43 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLN---VWLVDAN 43 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCc---eEEecCC
Confidence 34688999999999999999999987 9999985
No 374
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.06 E-value=11 Score=43.12 Aligned_cols=89 Identities=15% Similarity=0.228 Sum_probs=53.7
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHH----Hh--ccccCCCCHHHH-hccCcEEEe
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKA----RF--IKDTTARTLSDI-IPNADIFLG 268 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~----~~--a~~~~~~~L~e~-i~~~~vliG 268 (766)
+|+|+|+|..|..+++.|.+.|.. +.++|++.- .....+. ++ ...++..+|.++ ++++|.+|-
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~---v~vid~~~~-------~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENND---VTVIDTDEE-------RLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc---EEEEECCHH-------HHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 799999999999999999998865 888887421 1112111 01 111233467777 778877665
Q ss_pred cCCC---CCCCHHHHHhhccCcEEEeccC
Q psy14495 269 LSVS---GVLKKEMVLQMAKNPIILALAN 294 (766)
Q Consensus 269 ~S~~---g~ft~evv~~M~~~PiIfaLsN 294 (766)
++.. ..+.-...|.+.+.+-|++..+
T Consensus 72 ~~~~~~~n~~~~~~~r~~~~~~~ii~~~~ 100 (453)
T PRK09496 72 VTDSDETNMVACQIAKSLFGAPTTIARVR 100 (453)
T ss_pred ecCChHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 5431 2333345556545555555543
No 375
>PLN02463 lycopene beta cyclase
Probab=68.05 E-value=5.7 Score=45.90 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=28.9
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-.|+|+|||.||..+|..|.+.|++ +.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCe---EEEeccC
Confidence 4799999999999999999999987 8889875
No 376
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=67.96 E-value=4.8 Score=44.53 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=29.0
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVL 232 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv 232 (766)
+|||+|+|.||+..|+.+.+..-+.-+|+|+|++...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 5999999999999999986543334479999986543
No 377
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=67.92 E-value=6 Score=45.55 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-...+|+|+|+|.||+..|..|.+.|.+ +.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccC
Confidence 3457999999999999999999998864 8999875
No 378
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=67.90 E-value=5.1 Score=48.59 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=31.7
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.-+..+|+|+|||.||+..|-.|.+.|++ +.++++.
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~ 113 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKD 113 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEecc
Confidence 35667999999999999999999999987 8888875
No 379
>PLN02676 polyamine oxidase
Probab=67.83 E-value=13 Score=43.51 Aligned_cols=38 Identities=13% Similarity=0.399 Sum_probs=32.2
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVL 232 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv 232 (766)
...+|+|+|||.+|+++|..|.+.|.. ++.+++++.-+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~ 62 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRI 62 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCC
Confidence 456899999999999999999999974 68888887544
No 380
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=67.82 E-value=5 Score=42.51 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=37.0
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcccc
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLY 233 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~ 233 (766)
+|++++|+++|.|-.|--+++.|.+.|+- +|.++|-+-+=.
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRsGig--~itlID~D~v~v 67 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARSGIG--RITLIDMDDVCV 67 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHcCCC--eEEEEecccccc
Confidence 48999999999999999999999999988 899999976543
No 381
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=67.64 E-value=5 Score=45.11 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=28.6
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..|+|+|||.+|+..|-.|.+.|++ +.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLE---VLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCE---EEEEcCC
Confidence 3699999999999999999999986 8888875
No 382
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=67.57 E-value=6.6 Score=48.33 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=31.7
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+-...+|+|+|||.||+..|..|.+.|.+ +.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecC
Confidence 34677999999999999999999999975 9999974
No 383
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=67.56 E-value=18 Score=39.85 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=28.9
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+|-++|||..|-|||..+...|++ ++++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~---V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYD---VVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCc---eEEEeCC
Confidence 5899999999999999999997777 8888886
No 384
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=67.54 E-value=5.8 Score=44.18 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=29.9
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
...|+|+|||.+|+..|-.|.+.|++ +.++|+.-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGAS---VALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCC
Confidence 45799999999999999999999976 88898863
No 385
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=67.44 E-value=5.4 Score=48.13 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=35.1
Q ss_pred CCceEEEECcchhhHHHHHHHHHc-CCCCccEEEEcCCc-cccCCCCCCCcH
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDL-GFPLQNIFVTDLAG-VLYKGRSELMDS 242 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~-g~~~~~i~~~D~~G-lv~~~r~~~l~~ 242 (766)
++..|+|+|||.+|+..|-.|.+. |++ +.++|++- ....+|...+++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~~~~~~~grA~gl~p 79 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERKPGRLELGQADGIAC 79 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcCCCCCCCCeeeEECh
Confidence 467899999999999999999994 987 88888763 333344333333
No 386
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=67.41 E-value=6.3 Score=43.52 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=29.6
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
...|+|+|||-+|+.+|..|.+.|. ++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~---~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL---RVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC---eEEEEeccc
Confidence 3569999999999999999999985 499999854
No 387
>PRK10015 oxidoreductase; Provisional
Probab=67.37 E-value=5.9 Score=45.38 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=29.1
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-.|+|+|||.||..+|..|.+.|++ +.++|+.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~ 37 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLD---VLVIERG 37 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCe---EEEEecC
Confidence 4799999999999999999999987 8999875
No 388
>PRK07190 hypothetical protein; Provisional
Probab=67.35 E-value=6.7 Score=45.75 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=29.9
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
...|+|+|||.+|+..|-.|.+.|++ +.++|+.-
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCC
Confidence 35799999999999999999999987 88888864
No 389
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=67.32 E-value=36 Score=37.12 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=59.0
Q ss_pred HHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc---cCCCCHH
Q psy14495 181 ILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD---TTARTLS 257 (766)
Q Consensus 181 ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~---~~~~~L~ 257 (766)
.+.+++.....-.+.++++.|+|+.|..++.+....|.+ ++++.++..- | .+..++.-+.. ....++.
T Consensus 163 A~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~--~v~~~~~~~~----~---~~~~~~~g~~~~~~~~~~~~~ 233 (350)
T cd08240 163 AYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPA--NIIVVDIDEA----K---LEAAKAAGADVVVNGSDPDAA 233 (350)
T ss_pred HHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCC--eEEEEeCCHH----H---HHHHHHhCCcEEecCCCccHH
Confidence 344555554333678999999999999999999999975 7887765310 1 11111100100 0111222
Q ss_pred HHh----c-cCcEEEecCCCCCCCHHHHHhhccCcEEEeccC
Q psy14495 258 DII----P-NADIFLGLSVSGVLKKEMVLQMAKNPIILALAN 294 (766)
Q Consensus 258 e~i----~-~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsN 294 (766)
+.+ . ++|++|-.++.+..-++.++.|...-.+.-++.
T Consensus 234 ~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 234 KRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred HHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECC
Confidence 222 2 368888776533445667777776555554544
No 390
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=67.28 E-value=23 Score=38.41 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=59.3
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhcc---CcEEEecCCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPN---ADIFLGLSVS 272 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~---~~vliG~S~~ 272 (766)
||.|+|.|..|..+|+-|.+.|.. ++++|++. +.....+..-+ ....++.|+++. +|++|=+-..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~---v~v~dr~~-------~~~~~~~~~g~--~~~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHE---VVGYDVNQ-------EAVDVAGKLGI--TARHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCE---EEEEECCH-------HHHHHHHHCCC--eecCCHHHHHHhCCCCCEEEEEecC
Confidence 699999999999999999998864 77777631 11222211111 123578888876 4666522222
Q ss_pred CCCCHHHHHh----hccCcEEEeccCCCCccCHh
Q psy14495 273 GVLKKEMVLQ----MAKNPIILALANPLPEILPE 302 (766)
Q Consensus 273 g~ft~evv~~----M~~~PiIfaLsNPt~E~~pe 302 (766)
....++++.. +.+..+|.-+|+-.|+-+-+
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~ 103 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLR 103 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHH
Confidence 3244555444 44678999998866644443
No 391
>PRK06545 prephenate dehydrogenase; Validated
Probab=67.22 E-value=11 Score=42.03 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=49.4
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc---ccCCCCHHHHhccCcEEEecCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK---DTTARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~---~~~~~~L~e~i~~~~vliG~S~ 271 (766)
.||.|+|.|..|.++|..|.+.|.. ++++|.+ + +..... ..... +....++.++++++|++| ++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~---v~i~~~~------~-~~~~~~-~a~~~~~~~~~~~~~~~~~~~aDlVi-lav 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPD---VFIIGYD------P-SAAQLA-RALGFGVIDELAADLQRAAAEADLIV-LAV 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCC---eEEEEeC------C-CHHHHH-HHhcCCCCcccccCHHHHhcCCCEEE-EeC
Confidence 3799999999999999999999964 4555542 1 111111 11100 112357888999999877 555
Q ss_pred CCCCCHHHHHhhc
Q psy14495 272 SGVLKKEMVLQMA 284 (766)
Q Consensus 272 ~g~ft~evv~~M~ 284 (766)
|-..++++++.+.
T Consensus 69 P~~~~~~vl~~l~ 81 (359)
T PRK06545 69 PVDATAALLAELA 81 (359)
T ss_pred CHHHHHHHHHHHh
Confidence 4335667777665
No 392
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=67.18 E-value=6.2 Score=46.53 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=30.0
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
...+|+|+|||.+|+..|..|.+.|++ +.++|++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~ 55 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDD 55 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCC
Confidence 345899999999999999999999987 7888876
No 393
>PRK10262 thioredoxin reductase; Provisional
Probab=67.17 E-value=6.3 Score=42.85 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=27.0
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTD 227 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D 227 (766)
+..+|+|+|+|.||+..|..+.+.|.+ ..+++
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie 36 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQ---PVLIT 36 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEE
Confidence 567899999999999999999998865 55554
No 394
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=67.14 E-value=36 Score=37.19 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=32.5
Q ss_pred HHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 181 ILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 181 ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
.+.+++.. .--..++++|+|+|+.|..++.+....|.. +++.+++
T Consensus 161 a~~~l~~~-~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~--~v~~~~~ 205 (351)
T cd08233 161 AWHAVRRS-GFKPGDTALVLGAGPIGLLTILALKAAGAS--KIIVSEP 205 (351)
T ss_pred HHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEECC
Confidence 34455332 223568999999999998888888888975 5777764
No 395
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=67.03 E-value=6.4 Score=38.46 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=28.1
Q ss_pred EEECcchhhHHHHHHHHHcC--CCCccEEEEcCCcc
Q psy14495 198 VVSGAGAAALACLDLIIDLG--FPLQNIFVTDLAGV 231 (766)
Q Consensus 198 v~~GaG~ag~gia~~l~~~g--~~~~~i~~~D~~Gl 231 (766)
+|+|+|.+|+.++..|.+.. -..-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 48999999999999999875 33458999999754
No 396
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=66.75 E-value=9.8 Score=41.80 Aligned_cols=103 Identities=25% Similarity=0.327 Sum_probs=60.8
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc--ccC-CCCHHHHhccCcEEEecCC-
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK--DTT-ARTLSDIIPNADIFLGLSV- 271 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~--~~~-~~~L~e~i~~~~vliG~S~- 271 (766)
||.|+|||..|..+|.+|...|+. +.+.|+|.+-=..++..-+|.+.. .|.. ... ..+-.+.++++|++|=+.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~-~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF-SEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC-CEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 689999999999999999888874 379999973110111001233222 2221 111 0122678899998763332
Q ss_pred ---CCCCC--------------HHHHHhhc---cCcEEEeccCCCCccCH
Q psy14495 272 ---SGVLK--------------KEMVLQMA---KNPIILALANPLPEILP 301 (766)
Q Consensus 272 ---~g~ft--------------~evv~~M~---~~PiIfaLsNPt~E~~p 301 (766)
+| -| +++++.+. .+.|++-.|||.--.|+
T Consensus 79 ~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~ 127 (307)
T cd05290 79 SIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVY 127 (307)
T ss_pred CCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHH
Confidence 34 23 23333333 58999999999744443
No 397
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=66.68 E-value=6.9 Score=44.95 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=29.4
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
-.++|+|||+||+..|..+.+.|.+ +.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G~~---V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLGLK---VAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCc---EEEEeccc
Confidence 4699999999999999999999875 99999863
No 398
>PRK06126 hypothetical protein; Provisional
Probab=66.64 E-value=7.3 Score=45.81 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
-.+.+|+|+|||.+|+..|-.|.+.|++ +.++|+.-
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVD---SILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCC
Confidence 3457899999999999999999999987 88888764
No 399
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.61 E-value=7.5 Score=41.91 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=28.7
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+||.|+|+|..|.++|..|.+.|.. ++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~---V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQ---TTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCc---EEEEeCC
Confidence 4799999999999999999999865 8999874
No 400
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.58 E-value=7.2 Score=44.60 Aligned_cols=36 Identities=33% Similarity=0.519 Sum_probs=32.3
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
++++.+++|+|+|.+|.++|+.|.+.|.. ++++|++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence 36778999999999999999999999965 9999885
No 401
>PRK15076 alpha-galactosidase; Provisional
Probab=66.51 E-value=21 Score=41.11 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=38.8
Q ss_pred ceEEEECcchhhHHHHH--HHH-HcCCCCccEEEEcCCccccCCCCC---C-CcHHHHHhcccc---CCCCHHHHhccCc
Q psy14495 195 CKLVVSGAGAAALACLD--LII-DLGFPLQNIFVTDLAGVLYKGRSE---L-MDSNKARFIKDT---TARTLSDIIPNAD 264 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~--~l~-~~g~~~~~i~~~D~~Glv~~~r~~---~-l~~~k~~~a~~~---~~~~L~e~i~~~~ 264 (766)
.||.|+|||+.|...+- .+. ..++.-..++|+|.+- +|.+ . +......+.... -..++.++++++|
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRREALQGAD 77 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCC
Confidence 58999999998755433 343 3445444799999742 1110 0 111111111111 1357899999998
Q ss_pred EEE
Q psy14495 265 IFL 267 (766)
Q Consensus 265 vli 267 (766)
+++
T Consensus 78 fVv 80 (431)
T PRK15076 78 YVI 80 (431)
T ss_pred EEe
Confidence 764
No 402
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=66.44 E-value=6.6 Score=43.41 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=29.0
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl 231 (766)
.|+|+|||.+|+.+|..|.+.|.+ +.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~---V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKK---TLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCC
Confidence 589999999999999999998854 999998654
No 403
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=65.83 E-value=7.1 Score=44.11 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=27.6
Q ss_pred ceEEEECcchhhHHHHHHHHHcC-CCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLG-FPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g-~~~~~i~~~D~~ 229 (766)
.||+|+|||.||+.+|..|.+.| ++ +.++++.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~---v~v~Er~ 33 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLN---VQLFEAA 33 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCC---EEEEecC
Confidence 37999999999999999999987 45 7887773
No 404
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=65.83 E-value=8.6 Score=44.43 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=57.4
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEec
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGL 269 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~ 269 (766)
..|++++|+|+|-|+-|-+-|--|...|+. +.+--++|.|-.++. .+.+.-+..-...++.|+++.+|+++=+
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvn---Vvvglr~~~id~~~~----s~~kA~~dGF~v~~~~Ea~~~ADvVviL 104 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLD---ISYALRKEAIAEKRA----SWRKATENGFKVGTYEELIPQADLVINL 104 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccce---eEEeccccccccccc----hHHHHHhcCCccCCHHHHHHhCCEEEEc
Confidence 358889999999999998777777777775 444445555543331 2222111122346899999999998855
Q ss_pred CC---CCCCCHHHHHhhcc
Q psy14495 270 SV---SGVLKKEMVLQMAK 285 (766)
Q Consensus 270 S~---~g~ft~evv~~M~~ 285 (766)
-- .+.+.+++...|.+
T Consensus 105 lPDt~q~~v~~~i~p~LK~ 123 (487)
T PRK05225 105 TPDKQHSDVVRAVQPLMKQ 123 (487)
T ss_pred CChHHHHHHHHHHHhhCCC
Confidence 31 33455677777764
No 405
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=65.36 E-value=9.6 Score=41.03 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=45.6
Q ss_pred EecCCchhHHHHHHHHHHHHhHhCCcCCCceEEEECc-chhhHHHHHHHHHcCC
Q psy14495 166 FHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGA-GAAALACLDLIIDLGF 218 (766)
Q Consensus 166 fnDD~qGTa~v~lA~ll~al~~~~~~l~d~~iv~~Ga-G~ag~gia~~l~~~g~ 218 (766)
|-.---+||-++.=.++-+...+|.+|++..+.|+|| |..|.+||++|...+-
T Consensus 139 ~ttgns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~ 192 (351)
T COG5322 139 FTTGNSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVG 192 (351)
T ss_pred cccCCccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccC
Confidence 3344457888999999999999999999999999998 8999999999987643
No 406
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=65.21 E-value=15 Score=40.59 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=60.3
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC-ccccCCCCCCCcHHHHHhcccc---CCCCHHHHhccCcEEE---
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA-GVLYKGRSELMDSNKARFIKDT---TARTLSDIIPNADIFL--- 267 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~-Glv~~~r~~~l~~~k~~~a~~~---~~~~L~e~i~~~~vli--- 267 (766)
.||+++|||.-|...|-+|...++.. .+.|+|-. +...-.. -+|.+.-.+.-.+. ...+ .+.++++|+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~-el~LiDi~~~~~~G~a-~DL~~~~~~~~~~~~i~~~~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGS-ELVLIDINEEKAEGVA-LDLSHAAAPLGSDVKITGDGD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccc-eEEEEEcccccccchh-cchhhcchhccCceEEecCCC-hhhhcCCCEEEEeC
Confidence 38999999999999999997777652 79999986 1111111 12333221111111 1133 67788998754
Q ss_pred ecCC-CCC-----------CCHHHHHhhc---cCcEEEeccCCCC
Q psy14495 268 GLSV-SGV-----------LKKEMVLQMA---KNPIILALANPLP 297 (766)
Q Consensus 268 G~S~-~g~-----------ft~evv~~M~---~~PiIfaLsNPt~ 297 (766)
|+.. ||. .-+++.+.++ ++.||+-.|||.-
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD 122 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVD 122 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHH
Confidence 2233 661 2234444444 5889999999963
No 407
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=65.01 E-value=18 Score=41.13 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=70.6
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHH------hcc-c-cCCCCHHHHhccCcEE
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKAR------FIK-D-TTARTLSDIIPNADIF 266 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~------~a~-~-~~~~~L~e~i~~~~vl 266 (766)
.+|+++|||--|-.+|..|.+.|-. +|++.|+. . ++....... .+. + .+...|.++|++.|+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~--~V~iAdRs----~---~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDG--EVTIADRS----K---EKCARIAELIGGKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCc--eEEEEeCC----H---HHHHHHHhhccccceeEEecccChHHHHHHHhcCCEE
Confidence 4799999999999999999998864 89998883 1 112222111 111 1 2346799999999999
Q ss_pred EecCCCCCCCHHHHHhhcc-CcEEEeccCCC--CccCHhhHhcccCcEEEEcC
Q psy14495 267 LGLSVSGVLKKEMVLQMAK-NPIILALANPL--PEILPEDIKSVRNDAIIATG 316 (766)
Q Consensus 267 iG~S~~g~ft~evv~~M~~-~PiIfaLsNPt--~E~~pe~a~~~~~~ai~atG 316 (766)
|-+- ++-++..++++-.+ .=-..-.|+=. +.---++|.+++-.+|..+|
T Consensus 73 In~~-p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G 124 (389)
T COG1748 73 INAA-PPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCG 124 (389)
T ss_pred EEeC-CchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccC
Confidence 8654 35577777766542 33334444422 12233346666556777777
No 408
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=65.01 E-value=7.8 Score=46.94 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.1
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+..||+|+|+|.||+..|..|.+.|.+ ++++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecC
Confidence 457999999999999999999999865 8899875
No 409
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=65.00 E-value=39 Score=41.57 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=29.1
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.||.|+|||..|.|||..+...|+. ++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~---V~l~d~~ 345 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTP---IVMKDIN 345 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCe---EEEEeCC
Confidence 4799999999999999999999987 8899964
No 410
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=64.91 E-value=6.8 Score=44.80 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=23.0
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+|+|+|||+||+-+|-.+.+.|.+ +.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~---V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGAR---VLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT-----EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCC---EEEEeCC
Confidence 589999999999999999998876 7777764
No 411
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=64.89 E-value=5 Score=36.53 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=29.7
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
++++.+++++|+|..|..=+++|.+.|. +++++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA---~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA---KVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB---EEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC---EEEEECCch
Confidence 5788999999999999999999999984 488887753
No 412
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=64.79 E-value=7 Score=43.61 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=28.6
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+|+|+|||.+|...|-.|.+.|++ +.++|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIK---TTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCe---EEEecCC
Confidence 3689999999999999999999986 8888874
No 413
>PLN02268 probable polyamine oxidase
Probab=64.73 E-value=6.9 Score=44.45 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=26.7
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+|+|+|||-||+..|..|.+.|.+ +.++...
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~---v~vlEa~ 32 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFK---VTLLESR 32 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEeCC
Confidence 799999999999999999998875 6666554
No 414
>PRK14694 putative mercuric reductase; Provisional
Probab=64.73 E-value=8.4 Score=44.50 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=29.9
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+-.++|+|||+||+..|..+.+.|.+ +.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~---v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGAR---VTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEEcc
Confidence 445799999999999999999999975 9999975
No 415
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=64.68 E-value=25 Score=38.91 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=60.8
Q ss_pred eEEEECc-chhhHHHHHHHHHcCCC---Cc-cEEEEcCCccc--cCCCCCCCcHHHHHhccc-cCCCCHHHHhccCcEEE
Q psy14495 196 KLVVSGA-GAAALACLDLIIDLGFP---LQ-NIFVTDLAGVL--YKGRSELMDSNKARFIKD-TTARTLSDIIPNADIFL 267 (766)
Q Consensus 196 ~iv~~Ga-G~ag~gia~~l~~~g~~---~~-~i~~~D~~Glv--~~~r~~~l~~~k~~~a~~-~~~~~L~e~i~~~~vli 267 (766)
||.|+|| |.-|..+|..|...|+- .+ .+.|+|.+.-. .++..-+|.+...++... ....+..+.++++|++|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6899999 99999999999987774 33 59999974221 111111344433233221 11225688999999876
Q ss_pred ecCC----CCC-C----------CHHHHHhhc----cCcEEEeccCCCC
Q psy14495 268 GLSV----SGV-L----------KKEMVLQMA----KNPIILALANPLP 297 (766)
Q Consensus 268 G~S~----~g~-f----------t~evv~~M~----~~PiIfaLsNPt~ 297 (766)
=+.+ +|. . -+++.+.|. +.-||+-.|||.-
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD 129 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN 129 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 3333 231 1 123334443 4568888999863
No 416
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=64.52 E-value=9.9 Score=42.08 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=30.1
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..++|+|+|+|.||+.+|..|.+.|.+ +.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCC
Confidence 457999999999999999999998865 8889886
No 417
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=64.46 E-value=6.6 Score=42.10 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=36.3
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.++|+..+|+++|+|.-|.-++..|..+|+. +|.++|.+-
T Consensus 21 Q~KL~~SrVLVVG~GGLGsEVAKnLaLAGVG--sItIvDdD~ 60 (287)
T PTZ00245 21 QQQLMHTSVALHGVAGAAAEAAKNLVLAGVR--AVAVADEGL 60 (287)
T ss_pred HHHHhhCeEEEECCCchHHHHHHHHHHcCCC--eEEEecCCc
Confidence 3568999999999999999999999999998 899999863
No 418
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=64.40 E-value=7.7 Score=46.02 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=28.4
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.|+|+|||.||+..|..+.+.|.+ +.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC---EEEEecCC
Confidence 699999999999999999998865 99999753
No 419
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=64.40 E-value=7.7 Score=43.87 Aligned_cols=31 Identities=16% Similarity=0.415 Sum_probs=27.3
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+++|+|||.||+.+|..|.+.|.+ +.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~~---V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNKR---VLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCe---EEEEecC
Confidence 689999999999999999988854 8888874
No 420
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=64.33 E-value=53 Score=36.67 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=67.4
Q ss_pred HHHHHHHhhcCCCcEEe--cCCchhHHHHHHHHHHHHhHhCCcC-CCceEEEECcchh-------hHHHHHHHHHcCCCC
Q psy14495 151 FYIEKKLRNHMKIPVFH--DDQHGTAIIVGSAILNGLKLVKKKM-KDCKLVVSGAGAA-------ALACLDLIIDLGFPL 220 (766)
Q Consensus 151 f~il~~~~~~~~~~~fn--DD~qGTa~v~lA~ll~al~~~~~~l-~d~~iv~~GaG~a-------g~gia~~l~~~g~~~ 220 (766)
...++++.+..++||.| ||.|=| =+|+=++.-.+..| ++ +..||+|.|+|.. .-..+.++...|+.
T Consensus 126 ~~~~~~~a~~s~vPVINa~~~~HPt--QaLaDl~Ti~e~~g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~- 201 (335)
T PRK04523 126 DQVLNSFAKYSTVPVINMETITHPC--QELAHALALQEHFG-TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMD- 201 (335)
T ss_pred HHHHHHHHHhCCCCEEECCCCCChH--HHHHHHHHHHHHhC-CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCE-
Confidence 34455554445799999 554444 45666666555655 47 7899988877653 11233344567865
Q ss_pred ccEEEEcC-CccccCCCCCCCcHHHHHhcccc-----CCCCHHHHhccCcEEEecCC
Q psy14495 221 QNIFVTDL-AGVLYKGRSELMDSNKARFIKDT-----TARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 221 ~~i~~~D~-~Glv~~~r~~~l~~~k~~~a~~~-----~~~~L~e~i~~~~vliG~S~ 271 (766)
+.++-. +|+--.. +-++..| .+++.. ...++.|+++++||+.-.++
T Consensus 202 --v~~~~P~~~~~~~~--~~~~~~~-~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w 253 (335)
T PRK04523 202 --VTLLCPTPDYILDE--RYMDWAE-QNAAESGGSLTVSHDIDSAYAGADVVYAKSW 253 (335)
T ss_pred --EEEECCchhhCCCH--HHHHHHH-HHHHHcCCeEEEEcCHHHHhCCCCEEEecee
Confidence 888888 7762110 0122222 233321 23689999999999987765
No 421
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=64.24 E-value=8.4 Score=41.59 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=28.9
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.||.|+|+|..|.++|..+...|.. ++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~---V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYD---VTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCe---EEEEeCC
Confidence 5799999999999999999999974 9999974
No 422
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=64.19 E-value=6.2 Score=44.08 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=27.3
Q ss_pred eEEEECcchhhHHHHHHHHHcC--CCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLG--FPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g--~~~~~i~~~D~~ 229 (766)
+|+|+|||.||+.+|..|.+.| ++ +.++|+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~ 35 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAA 35 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCC
Confidence 5899999999999999999986 65 8888885
No 423
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=64.08 E-value=7.6 Score=45.55 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=30.5
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl 231 (766)
-.|||+|+|.+|+++|..+...|++ +.|+|+..+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~---V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLS---VLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence 4699999999999999999999988 999998643
No 424
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=64.01 E-value=7.7 Score=42.80 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=28.4
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.|+|+|||-+|+.+|..|.+.|.+ +.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~---V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLS---VTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 489999999999999999999865 99999863
No 425
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=64.00 E-value=7.9 Score=45.56 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.+.+|+|+|||.+|+..|..|.+.|++ +.++|+.-
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~ 43 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWP 43 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCC
Confidence 456899999999999999999999987 88888764
No 426
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=63.90 E-value=8 Score=46.86 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=30.3
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl 231 (766)
..|+|+|||-+|+.+|..|.+.|.+ +.++|++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~---V~VlE~~~~ 294 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQ---VTLYEADEA 294 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence 4799999999999999999999975 999998743
No 427
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=63.84 E-value=8.4 Score=44.90 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=30.1
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
...||+|+|+|.||+.+|..|.+.|.+ ++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHT---VTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCe---EEEEecC
Confidence 347999999999999999999999865 9999875
No 428
>PRK08507 prephenate dehydrogenase; Validated
Probab=63.81 E-value=25 Score=37.52 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=53.0
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCCCCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSGVL 275 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~g~f 275 (766)
||.|+|.|..|-.+|..|.+.|.. .++|.+|++- +.+...+..-+. ....++.++.+ +|++| ++.+...
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~-~~v~~~d~~~-------~~~~~~~~~g~~-~~~~~~~~~~~-aD~Vi-lavp~~~ 70 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLI-SKVYGYDHNE-------LHLKKALELGLV-DEIVSFEELKK-CDVIF-LAIPVDA 70 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCC-CEEEEEcCCH-------HHHHHHHHCCCC-cccCCHHHHhc-CCEEE-EeCcHHH
Confidence 799999999999999999998863 3588887631 111221110000 11235666554 88776 5544334
Q ss_pred CHHHHHhhc---cCcEEEeccC
Q psy14495 276 KKEMVLQMA---KNPIILALAN 294 (766)
Q Consensus 276 t~evv~~M~---~~PiIfaLsN 294 (766)
..++++.+. +..+|+..+-
T Consensus 71 ~~~~~~~l~~l~~~~iv~d~gs 92 (275)
T PRK08507 71 IIEILPKLLDIKENTTIIDLGS 92 (275)
T ss_pred HHHHHHHHhccCCCCEEEECcc
Confidence 455665553 4557776554
No 429
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=63.77 E-value=7.4 Score=43.64 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=28.4
Q ss_pred ceEEEECcchhhHHHHHHHHHc--CCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDL--GFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~--g~~~~~i~~~D~~ 229 (766)
..|+|+|||.+|+.+|..|.+. |.+ +.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~---V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGAR---IAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCe---EEEEeCC
Confidence 4699999999999999999987 754 9999985
No 430
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=63.70 E-value=52 Score=36.26 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=62.7
Q ss_pred CCcEEe--cCCchhHHHHHHHHHHHHhHhCC-cCCCceEEEECcch-hhHHHHHHHHHcCCCCccEEEEcCCccccCCCC
Q psy14495 162 KIPVFH--DDQHGTAIIVGSAILNGLKLVKK-KMKDCKLVVSGAGA-AALACLDLIIDLGFPLQNIFVTDLAGVLYKGRS 237 (766)
Q Consensus 162 ~~~~fn--DD~qGTa~v~lA~ll~al~~~~~-~l~d~~iv~~GaG~-ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~ 237 (766)
.+||.| || .-.-.=+|+=++.-.+..|. +++..||+++|-++ ..-..+.++...|+. +.++-.+|+.
T Consensus 119 ~vPVINag~~-~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~---v~~~~P~~~~----- 189 (311)
T PRK14804 119 QVPVINGCDN-MFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIH---LTLVTPIAAK----- 189 (311)
T ss_pred CCCEEECCCC-CCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCE---EEEECCCCcc-----
Confidence 589999 44 35555667777766666665 69999999999631 111223334456875 8888888742
Q ss_pred CCCcHHHHHhccccC----CCCHHHHhccCcEEEecCC
Q psy14495 238 ELMDSNKARFIKDTT----ARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 238 ~~l~~~k~~~a~~~~----~~~L~e~i~~~~vliG~S~ 271 (766)
+...+....+++... ..++.++++++||+.-.++
T Consensus 190 ~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~w 227 (311)
T PRK14804 190 ENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDTW 227 (311)
T ss_pred HHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeeee
Confidence 111111112222111 3679999999999987554
No 431
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.70 E-value=8.1 Score=44.83 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=31.4
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
++++||+|+|.|..|.++|++|.+.|.. +++.|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~---v~~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA---QALTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE---EEEEcCC
Confidence 5678999999999999999999999987 8888874
No 432
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=63.68 E-value=15 Score=38.61 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=48.6
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcc--ccCCCCHHHHhccCcEEEecCCCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK--DTTARTLSDIIPNADIFLGLSVSG 273 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~--~~~~~~L~e~i~~~~vliG~S~~g 273 (766)
+|.++|.|+-|-++.+++..--.+-+-++++|++ ..+.+..-+. .....+|.|.++.+|+++=+..+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~----------~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~ 71 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD----------EEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPE 71 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCC----------HHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHH
Confidence 7899999999999999988632445567777773 2222211111 122367888888888888766554
Q ss_pred CCCHHHHHh
Q psy14495 274 VLKKEMVLQ 282 (766)
Q Consensus 274 ~ft~evv~~ 282 (766)
+..+-+.+.
T Consensus 72 Av~e~~~~~ 80 (255)
T COG1712 72 AVREYVPKI 80 (255)
T ss_pred HHHHHhHHH
Confidence 444333333
No 433
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=63.64 E-value=15 Score=39.56 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=55.2
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEE-ecCCCC-
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFL-GLSVSG- 273 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vli-G~S~~g- 273 (766)
||-|+|.|..|..+|..|.+.|.. ++++|++- +.....+..- .....++.|+++.+|++| -+....
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~---V~~~dr~~-------~~~~~~~~~g--~~~~~~~~~~~~~aDivi~~vp~~~~ 68 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQ---LHVTTIGP-------EVADELLAAG--AVTAETARQVTEQADVIFTMVPDSPQ 68 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCe---EEEEcCCH-------HHHHHHHHCC--CcccCCHHHHHhcCCEEEEecCCHHH
Confidence 588999999999999999999864 88887631 1122222111 112357889999998766 233211
Q ss_pred ----CCCH-HHHHhhccCcEEEeccCCCCc
Q psy14495 274 ----VLKK-EMVLQMAKNPIILALANPLPE 298 (766)
Q Consensus 274 ----~ft~-evv~~M~~~PiIfaLsNPt~E 298 (766)
.|.+ .++..+.+..+|.-+|+-.|+
T Consensus 69 ~~~v~~~~~~~~~~~~~g~iivd~st~~~~ 98 (291)
T TIGR01505 69 VEEVAFGENGIIEGAKPGKTLVDMSSISPI 98 (291)
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHH
Confidence 1221 234445556677777764453
No 434
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=63.42 E-value=29 Score=32.70 Aligned_cols=61 Identities=21% Similarity=0.189 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhcCcCCCCCCCeEEECCCCCcchhHHHHHHHHHHccCCCCHHHHHHHhhhCcHHHHHHHHHcCCccEEEe
Q psy14495 484 RTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMIC 563 (766)
Q Consensus 484 ~~~~I~~~~~~~~l~l~~~~~~eIid~~~~~~~~~~~~~~~~lr~~Kg~s~~~A~~~~~~~s~~~A~~lV~~G~AD~lvs 563 (766)
++++|++.+++.+.+ .+|+.-.+|- -|+|.|++|++|--+.
T Consensus 10 ~K~ei~~~i~~~~~~-----~~ev~i~sDm----------------------------------eAAm~vK~G~aDYY~G 50 (117)
T PF10941_consen 10 DKEEIAELIEKLGPG-----KVEVTIKSDM----------------------------------EAAMAVKSGQADYYLG 50 (117)
T ss_pred CHHHHHHHHHHHCCC-----cEEEEEechH----------------------------------HHHHHhhcCCcCEeEe
Confidence 588999999988643 4775433221 2899999999998886
Q ss_pred cc-cCChHHHHHHHHHHhccCC
Q psy14495 564 GI-LGSTKLHLNYIDQIIGKKN 584 (766)
Q Consensus 564 G~-~~tT~~~l~~~~~iig~~~ 584 (766)
.= +|. |.-|..+..++|.-.
T Consensus 51 ACnTGg-GgALamAIallG~~~ 71 (117)
T PF10941_consen 51 ACNTGG-GGALAMAIALLGYGK 71 (117)
T ss_pred ecCCCc-cHHHHHHHHHhCccc
Confidence 52 122 567888888898643
No 435
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=63.35 E-value=8.4 Score=44.38 Aligned_cols=31 Identities=32% Similarity=0.308 Sum_probs=28.6
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
|++|+|+|+||+..|..+.+.|.+ +.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~---V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN---VTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 899999999999999999999975 9999975
No 436
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=63.31 E-value=51 Score=36.24 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
....+++|+|+|+.|...+.+++..|.. ++.+|+.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~---vi~~~~~ 205 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFE---VYVLNRR 205 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCe---EEEEecC
Confidence 3578999999999999999888888873 8878763
No 437
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=63.22 E-value=6.4 Score=27.40 Aligned_cols=21 Identities=48% Similarity=0.724 Sum_probs=15.8
Q ss_pred ccchhhhhhHHHHHHhhccCC
Q psy14495 3 NFKKNFCKKSHQSALEYHEFP 23 (766)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (766)
+-|.+--..+|+.||+||++|
T Consensus 8 d~~~~~r~~lR~AALeYHefP 28 (28)
T PF12434_consen 8 DNKEDKRAQLRQAALEYHEFP 28 (28)
T ss_pred cchHHHHHHHHHHHHHhccCC
Confidence 345555667899999999874
No 438
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=63.02 E-value=8.8 Score=43.85 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=28.8
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-.+||+|+|+||+.+|..+.+.|.+ +.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~---V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWR---VALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCe---EEEEcCC
Confidence 4799999999999999999999865 9999975
No 439
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=62.96 E-value=6.7 Score=45.03 Aligned_cols=70 Identities=17% Similarity=0.319 Sum_probs=40.5
Q ss_pred CCceEEEECcchhhHHH---HHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc-------CCCCHHHHhcc
Q psy14495 193 KDCKLVVSGAGAAALAC---LDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT-------TARTLSDIIPN 262 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gi---a~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~-------~~~~L~e~i~~ 262 (766)
+..||+|+||||....- ..+.....++-..|||+|- ..+|.+..-..-+.+.+.. -..++.+|+++
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Di----d~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g 77 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDI----DEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG 77 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeC----CHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC
Confidence 45799999999986432 1122234556568999997 3344211111112222221 12589999999
Q ss_pred CcEE
Q psy14495 263 ADIF 266 (766)
Q Consensus 263 ~~vl 266 (766)
||..
T Consensus 78 AdfV 81 (442)
T COG1486 78 ADFV 81 (442)
T ss_pred CCEE
Confidence 8654
No 440
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=62.89 E-value=9.7 Score=44.14 Aligned_cols=35 Identities=34% Similarity=0.546 Sum_probs=30.6
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-+..||+|+|+|.||+..|..|.+.|.+ +.++|+.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~ 173 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQ---VVVFDRH 173 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecC
Confidence 3567999999999999999999999875 8888875
No 441
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=62.80 E-value=7.3 Score=44.44 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=28.7
Q ss_pred cCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 191 KMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 191 ~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
..+..||||+|+|.||+.+|+.|...+ -+|.|+|.+-
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~---~~ItlI~~~~ 43 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKK---YNITVISPRN 43 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCC---CeEEEEcCCC
Confidence 355679999999999999998885332 2599998753
No 442
>PRK08655 prephenate dehydrogenase; Provisional
Probab=62.72 E-value=19 Score=41.51 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=56.5
Q ss_pred eEEEEC-cchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhcccc---CCCCHHHHhccCcEEEecCC
Q psy14495 196 KLVVSG-AGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDT---TARTLSDIIPNADIFLGLSV 271 (766)
Q Consensus 196 ~iv~~G-aG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~---~~~~L~e~i~~~~vliG~S~ 271 (766)
||.|+| .|..|..+|..|.+.|. +++++|++. +... .++... -..++.++++.+|++| ++.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~---~V~v~~r~~-------~~~~----~~a~~~gv~~~~~~~e~~~~aDvVI-lav 66 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF---EVIVTGRDP-------KKGK----EVAKELGVEYANDNIDAAKDADIVI-ISV 66 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC---EEEEEECCh-------HHHH----HHHHHcCCeeccCHHHHhccCCEEE-Eec
Confidence 799998 79999999999999885 488888631 1111 122211 1246888899999876 555
Q ss_pred CCCCCHHHHHhhc----cCcEEEeccC
Q psy14495 272 SGVLKKEMVLQMA----KNPIILALAN 294 (766)
Q Consensus 272 ~g~ft~evv~~M~----~~PiIfaLsN 294 (766)
|-..++++++..+ +.-+|+-.+.
T Consensus 67 p~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 67 PINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 4444567766654 5668888886
No 443
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=62.71 E-value=67 Score=33.98 Aligned_cols=48 Identities=23% Similarity=0.180 Sum_probs=33.3
Q ss_pred HHHHHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 178 GSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 178 lA~ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
++..+.++. ..+--.+++++|.|+|+.|..++++....|.. .++++++
T Consensus 115 ~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~--~v~~~~~ 162 (312)
T cd08269 115 LGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGAR--RVIAIDR 162 (312)
T ss_pred HHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECC
Confidence 333344554 23334678999999999998888888888865 5776654
No 444
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=62.62 E-value=8.6 Score=44.29 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=30.3
Q ss_pred eEEEECcchhhHHHHHHHHHcCCC---CccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFP---LQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~---~~~i~~~D~~ 229 (766)
||+++|||.-|+-++..|...|+. ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCC
Confidence 689999999999999999999992 2489999986
No 445
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=62.36 E-value=9.9 Score=42.02 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=32.3
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVL 232 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv 232 (766)
...+|+|+|+|-+|+.+|-.|.+.|. +++++|++..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~---~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA---DVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC---EEEEEecCccC
Confidence 35689999999999999999999998 59999987543
No 446
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=62.17 E-value=10 Score=45.84 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=31.6
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.+..||+|+|+|.||+..|..|.+.|.+ +.++|+..
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCC
Confidence 3578999999999999999999999975 88888763
No 447
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.14 E-value=9.4 Score=44.34 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=30.7
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+...||+|+|+|-+|.++|++|.+.|.. +++.|++
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~---V~~~D~~ 47 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCD---VVVADDN 47 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCE---EEEECCC
Confidence 5567899999999999999999999974 8888864
No 448
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=62.01 E-value=9.3 Score=43.73 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=26.1
Q ss_pred EEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccc
Q psy14495 197 LVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVL 232 (766)
Q Consensus 197 iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv 232 (766)
|||+|+|.||+..|-...+.|.+ +.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHHCCCE---EEEEECCccC
Confidence 79999999999999999999986 8999988654
No 449
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.89 E-value=9.9 Score=41.00 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=28.8
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.||.|+|+|..|.++|..+...|.. ++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~---V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYD---VLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCe---EEEEeCC
Confidence 5899999999999999999999965 8888874
No 450
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=61.88 E-value=14 Score=41.23 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=40.6
Q ss_pred cCCchhHHHHHHHHHHH-HhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 168 DDQHGTAIIVGSAILNG-LKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 168 DD~qGTa~v~lA~ll~a-l~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
|++.+.-+=-+|.-+.+ ....+.+..+ +++|+|+|+-|+..+.++...|.+ +|+++|.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~-~V~V~GaGpIGLla~~~a~~~Ga~--~Viv~d~ 201 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGG-TVVVVGAGPIGLLAIALAKLLGAS--VVIVVDR 201 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCC-EEEEECCCHHHHHHHHHHHHcCCc--eEEEeCC
Confidence 44555555555555444 2222333333 999999999999988888888988 8999887
No 451
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.85 E-value=9.5 Score=41.33 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=28.8
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.||.|+|||..|.+||.++...|.. ++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~---V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD---VLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE---EEEEECC
Confidence 3899999999999999999999976 8888874
No 452
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=61.78 E-value=9.1 Score=44.03 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=27.5
Q ss_pred EEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 197 LVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 197 iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+||+|||+||+..|..+.+.|.+ +.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~~g~~---v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAELGAS---VAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHCCCe---EEEEeCC
Confidence 79999999999999999999965 9999975
No 453
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=61.51 E-value=9.3 Score=48.70 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=30.6
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+..||+|+|+|.||+.+|..|.+.|.+ +.++|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVD---VTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecC
Confidence 457999999999999999999999975 8889976
No 454
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=61.39 E-value=60 Score=35.92 Aligned_cols=89 Identities=20% Similarity=0.254 Sum_probs=54.6
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc--------cCCCCHHHHh----
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD--------TTARTLSDII---- 260 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~--------~~~~~L~e~i---- 260 (766)
.+++++|.|+|+.|..++.+....|.. .++.+|+. +.|..++++ ....++.+.+
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~--~v~~~~~~------------~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~ 251 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCT--TIIAVDIV------------DSRLELAKELGATHVINPKEEDLVAAIREIT 251 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCC------------HHHHHHHHHcCCcEEecCCCcCHHHHHHHHh
Confidence 468999999999998888888888976 57777662 112222211 1112333322
Q ss_pred -ccCcEEEecCCCCCCCHHHHHhhccCcEEEeccCC
Q psy14495 261 -PNADIFLGLSVSGVLKKEMVLQMAKNPIILALANP 295 (766)
Q Consensus 261 -~~~~vliG~S~~g~ft~evv~~M~~~PiIfaLsNP 295 (766)
+++|+++-+++.+...++.++.|++.-.++-++++
T Consensus 252 ~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 252 GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAP 287 (365)
T ss_pred CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcC
Confidence 23688887765434456777777766666655554
No 455
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=61.29 E-value=21 Score=39.44 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=61.2
Q ss_pred ceEEEECc-chhhHHHHHHHHHcCCC----CccEEEEcCCccc--cCCCCCCCcHHHHHhccccC-CCCHHHHhccCcEE
Q psy14495 195 CKLVVSGA-GAAALACLDLIIDLGFP----LQNIFVTDLAGVL--YKGRSELMDSNKARFIKDTT-ARTLSDIIPNADIF 266 (766)
Q Consensus 195 ~~iv~~Ga-G~ag~gia~~l~~~g~~----~~~i~~~D~~Glv--~~~r~~~l~~~k~~~a~~~~-~~~L~e~i~~~~vl 266 (766)
.||.|+|| |..|..+|..|...|+- ...+.|+|.+.-. ..+..-+|.+...++..... ..+..+.++++|++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 49999999 99999999999887763 1269999985322 11111134433323322111 24567889999987
Q ss_pred EecCC----CCCCCH------------HHHHhh---cc-CcEEEeccCCCC
Q psy14495 267 LGLSV----SGVLKK------------EMVLQM---AK-NPIILALANPLP 297 (766)
Q Consensus 267 iG~S~----~g~ft~------------evv~~M---~~-~PiIfaLsNPt~ 297 (766)
|=+.+ +| -|+ ++...+ ++ .-+|+-.|||.-
T Consensus 83 vitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (322)
T cd01338 83 LLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN 132 (322)
T ss_pred EEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH
Confidence 63322 34 232 222333 22 668888899864
No 456
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=61.18 E-value=9.1 Score=43.87 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=28.0
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.|+|+|+|.||+..|..+.+.|.+ +.++|+.
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~~---v~lie~~ 33 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGLK---VALVEKE 33 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCe---EEEEecC
Confidence 589999999999999999999975 9999983
No 457
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=61.14 E-value=9.6 Score=42.83 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=28.0
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+|+|+|||-+|+.+|..|.+.|.+ +.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~---V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHE---VTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCE---EEEEeCC
Confidence 699999999999999999998865 9999884
No 458
>KOG2018|consensus
Probab=61.07 E-value=9.3 Score=41.84 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=35.2
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl 231 (766)
.+++++=||++|||..|--++.||.+.|+. +|-++|-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RSG~q--Ki~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRSGVQ--KIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHhcCc--eEEEechhhc
Confidence 368999999999999999999999999998 7888887643
No 459
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=60.75 E-value=10 Score=43.92 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=29.3
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.-.+||+|+|+||+.+|..+.+.|.+ +.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLK---TALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCe---EEEEEcc
Confidence 34799999999999999999999975 9999975
No 460
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=60.65 E-value=58 Score=35.20 Aligned_cols=44 Identities=14% Similarity=0.000 Sum_probs=32.1
Q ss_pred HHHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 181 ILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 181 ll~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
.+.+++.. ....++++|+|+|+-|...+.+++..|.+ .+..+|.
T Consensus 134 a~~~~~~~--~~~~~~vlV~G~G~vG~~a~q~ak~~G~~--~v~~~~~ 177 (308)
T TIGR01202 134 ARHAVAGA--EVKVLPDLIVGHGTLGRLLARLTKAAGGS--PPAVWET 177 (308)
T ss_pred HHHHHHhc--ccCCCcEEEECCCHHHHHHHHHHHHcCCc--eEEEeCC
Confidence 34444432 23567899999999998888888888977 6777765
No 461
>PRK07208 hypothetical protein; Provisional
Probab=60.20 E-value=11 Score=43.47 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=29.4
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
...+|+|+|||-+|+..|..|.+.|.+ +.++++.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~---v~v~E~~ 36 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYP---VTVLEAD 36 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCc---EEEEecC
Confidence 345799999999999999999999875 8888875
No 462
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=60.17 E-value=11 Score=43.74 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=30.1
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
+++|+|+|||-+|+.+|..|.+.|.+ +.+++++.
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~---v~vlE~~~ 34 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYR---VTLLEQHA 34 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEecCC
Confidence 46899999999999999999999987 88888764
No 463
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.13 E-value=32 Score=40.23 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=30.3
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+.++|++|+|.|..|++++++|.+.|.+ +++.|.+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~---v~~~D~~ 44 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGAR---PTVCDDD 44 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCE---EEEEcCC
Confidence 3567999999999999999999999975 8888863
No 464
>PRK11445 putative oxidoreductase; Provisional
Probab=60.09 E-value=9.7 Score=42.16 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=27.1
Q ss_pred CCeEEEEeccccCCCCHHHHHHHHHHHHHHHHH
Q psy14495 599 DRQLMLVDTHINENPNAEELSEITILAAKKMFS 631 (766)
Q Consensus 599 ~~~~~l~D~g~Ni~P~~e~L~~ia~~aa~~a~~ 631 (766)
++.+++.|.+=.++|..-+=+..|...+..+-.
T Consensus 264 ~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~ 296 (351)
T PRK11445 264 DNAFLIGEAAGFISPSSLEGISYALDSARILSE 296 (351)
T ss_pred CCEEEEEcccCccCCccCccHHHHHHhHHHHHH
Confidence 568999999999999988888888777766554
No 465
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=59.98 E-value=9.9 Score=45.03 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=30.1
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
+..|+|+|+|..|+++|..|.+.|++ +.|+|+..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~---V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLR---CILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCe---EEEEECCC
Confidence 35799999999999999999999986 99999853
No 466
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=59.89 E-value=54 Score=35.54 Aligned_cols=32 Identities=28% Similarity=0.172 Sum_probs=26.4
Q ss_pred ceEEEECc-chhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 195 CKLVVSGA-GAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 195 ~~iv~~Ga-G~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
++|+|.|| |+.|..+..+....|.. +++.+++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~--~Vi~~~~ 188 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCS--RVVGICG 188 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCC--EEEEEcC
Confidence 89999998 99998888888888974 5776654
No 467
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=59.84 E-value=10 Score=44.31 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=30.5
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl 231 (766)
..|+|+|+|.+|.++|..|...|++ +.|++++-+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~---V~LlEk~d~ 40 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLK---VLLCEKDDL 40 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCc---EEEEECCCC
Confidence 5799999999999999999999986 999998743
No 468
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=59.69 E-value=11 Score=43.24 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=28.9
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+-.+||+|||.||+..|..+.+.|.+ +.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKK---VALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCe---EEEEeCC
Confidence 34699999999999999999999865 8889984
No 469
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=59.62 E-value=10 Score=43.66 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=28.6
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
+|+|+|||-||+.+|..|.+.|++ +.+++.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVP---VILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCc---EEEEeccc
Confidence 799999999999999999999986 88888654
No 470
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=59.60 E-value=16 Score=39.61 Aligned_cols=93 Identities=13% Similarity=0.226 Sum_probs=58.5
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecCCC-CC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVS-GV 274 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S~~-g~ 274 (766)
+|.|+|.|.-|..+|..|.+.|. +++++|+. . +...+.+..-+ ....++.|+++.+|++| ++.+ ..
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~---~V~v~d~~----~---~~~~~~~~~g~--~~~~s~~~~~~~aDvVi-~~vp~~~ 69 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGH---QLQVFDVN----P---QAVDALVDKGA--TPAASPAQAAAGAEFVI-TMLPNGD 69 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCC---eEEEEcCC----H---HHHHHHHHcCC--cccCCHHHHHhcCCEEE-EecCCHH
Confidence 79999999999999999999885 48888873 1 12223222111 23457889999998766 3332 21
Q ss_pred CCHH-------HHHhhccCcEEEeccCCCCccCH
Q psy14495 275 LKKE-------MVLQMAKNPIILALANPLPEILP 301 (766)
Q Consensus 275 ft~e-------vv~~M~~~PiIfaLsNPt~E~~p 301 (766)
..++ ++..+.+..+|.-+|.-.|+.+-
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~ 103 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTD 103 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHH
Confidence 2223 33344456677777776555443
No 471
>KOG2250|consensus
Probab=59.58 E-value=1.2e+02 Score=35.55 Aligned_cols=153 Identities=19% Similarity=0.189 Sum_probs=96.1
Q ss_pred cccccCC--CCchHHHHHHHhhcCCC--------cEE----ecCCchhHHHHHHHHHHHHhHhC--CcCCCceEEEECcc
Q psy14495 140 INLEDIK--APECFYIEKKLRNHMKI--------PVF----HDDQHGTAIIVGSAILNGLKLVK--KKMKDCKLVVSGAG 203 (766)
Q Consensus 140 i~~ED~~--~~~af~il~~~~~~~~~--------~~f----nDD~qGTa~v~lA~ll~al~~~~--~~l~d~~iv~~GaG 203 (766)
+-=+|++ ...---++..|+..-+. |+- ||-.--|+-=+..++=+=+.-.+ +.+++.|+++-|-|
T Consensus 181 vPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~G 260 (514)
T KOG2250|consen 181 VPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFG 260 (514)
T ss_pred CCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHHHHHHhccCCCCcCceEEEEeCCC
Confidence 4445554 23344578888753111 122 33333344333333333333334 77999999999999
Q ss_pred hhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHH-Hhcccc-CCC----------------CHHHHhccCcE
Q psy14495 204 AAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKA-RFIKDT-TAR----------------TLSDIIPNADI 265 (766)
Q Consensus 204 ~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~-~~a~~~-~~~----------------~L~e~i~~~~v 265 (766)
--|.-.+..|.+.|-. =|-+-|++|.|+... +++..+. .++... ... .+.--+.++|+
T Consensus 261 nv~~~aa~~l~~~G~k--vvavsD~~G~l~np~--Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI 336 (514)
T KOG2250|consen 261 NVGGHAAKKLSEKGAK--VVAVSDSKGVLINPD--GIDIEELLDLADEKKTIKSFDGAKLSYEGYIAGLPPWTLVEKCDI 336 (514)
T ss_pred chHHHHHHHHHhcCCE--EEEEEcCceeEECCC--CCCHHHHHHHHHhhccccccccccccCccccccCcchhhHhhCcE
Confidence 9998899999999865 577889999988754 4544332 333211 000 11223566899
Q ss_pred EEecCCCCCCCHHHHHhhc--cCcEEEeccC-CC
Q psy14495 266 FLGLSVSGVLKKEMVLQMA--KNPIILALAN-PL 296 (766)
Q Consensus 266 liG~S~~g~ft~evv~~M~--~~PiIfaLsN-Pt 296 (766)
|+-|.+.+.+|.|=..... ..|+|.==|| ||
T Consensus 337 ~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~pt 370 (514)
T KOG2250|consen 337 LVPCATQNEITGENAKALVAKGCKYIVEGANMPT 370 (514)
T ss_pred EeecCccCcccHhhHHHHHhcCCcEEEecCCCCC
Confidence 9999988888888777776 3588888888 53
No 472
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=59.53 E-value=11 Score=43.49 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=29.9
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCcc
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGV 231 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Gl 231 (766)
.+|+|+|||-||+..|-.|.+.|++ +.|+|.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCc
Confidence 5799999999999999999999987 888886543
No 473
>KOG1495|consensus
Probab=59.51 E-value=11 Score=40.64 Aligned_cols=40 Identities=28% Similarity=0.526 Sum_probs=34.1
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
-.+.+..||.++|+|..|++||-.|...|++ +++.++|-.
T Consensus 15 ~~~~~~~KItVVG~G~VGmAca~siL~k~La-del~lvDv~ 54 (332)
T KOG1495|consen 15 EKEFKHNKITVVGVGQVGMACAISILLKGLA-DELVLVDVN 54 (332)
T ss_pred cccccCceEEEEccchHHHHHHHHHHHhhhh-hceEEEecC
Confidence 3456678999999999999999999988987 478999963
No 474
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=59.40 E-value=11 Score=42.17 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=28.0
Q ss_pred EEEECcchhhHHHHHHHHHc--CCCCccEEEEcCCcccc
Q psy14495 197 LVVSGAGAAALACLDLIIDL--GFPLQNIFVTDLAGVLY 233 (766)
Q Consensus 197 iv~~GaG~ag~gia~~l~~~--g~~~~~i~~~D~~Glv~ 233 (766)
|+|+|||.||+.+|..|.+. |++ +.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCC
Confidence 79999999999999999876 765 88888865433
No 475
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=59.25 E-value=13 Score=41.58 Aligned_cols=41 Identities=17% Similarity=0.036 Sum_probs=31.1
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGR 236 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r 236 (766)
.+|||+|+|.||+..|+.|.+.+-. -+|.+++.+.-..-+|
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~-~~Itvi~~~~~~~y~~ 43 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAH-IPITLITADSGDEYNK 43 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcC-CCEEEEeCCCCCCcCc
Confidence 4899999999999999999875422 3799998765443344
No 476
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=59.19 E-value=8.5 Score=44.26 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=35.5
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
+.|++.+|+++|+|..|.-++..|+..|+. +|+++|.+=
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~GIg--~~tIvD~~~ 54 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLPGIG--SFTIVDGSK 54 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHcCCC--eEEEECCCc
Confidence 458899999999999999999999999998 899999863
No 477
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=59.14 E-value=28 Score=35.73 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=43.5
Q ss_pred CCCceEEEECcchhhHHHHHHHHH-c--CCCCc-----cEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIID-L--GFPLQ-----NIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNA 263 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~-~--g~~~~-----~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~ 263 (766)
.+..||.|+|.|..+ .+|..+.. . ++..+ -+.+.|..-+++.-- +-..+-..|++. |.-..+.-
T Consensus 39 ~~~~rI~~~G~GgSa-~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q-----l~~~~~~g 110 (196)
T PRK10886 39 LNGNKILCCGNGTSA-ANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ-----VRALGHAG 110 (196)
T ss_pred HcCCEEEEEECcHHH-HHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH-----HHHcCCCC
Confidence 456799999999887 45555543 1 22110 122222222222110 112333444442 33333334
Q ss_pred cEEEecCCCCCCCHHHHHhhc
Q psy14495 264 DIFLGLSVSGVLKKEMVLQMA 284 (766)
Q Consensus 264 ~vliG~S~~g~ft~evv~~M~ 284 (766)
|++|+.|..|- |+++++.+.
T Consensus 111 Dvli~iS~SG~-s~~v~~a~~ 130 (196)
T PRK10886 111 DVLLAISTRGN-SRDIVKAVE 130 (196)
T ss_pred CEEEEEeCCCC-CHHHHHHHH
Confidence 99999998664 677877743
No 478
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=59.13 E-value=6 Score=45.17 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=32.0
Q ss_pred CcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 190 ~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
..+...+++|+|+|.-|..+++.|.+.|.. ++++|++
T Consensus 227 ~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~---v~vid~~ 263 (453)
T PRK09496 227 LEKPVKRVMIVGGGNIGYYLAKLLEKEGYS---VKLIERD 263 (453)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhCCCe---EEEEECC
Confidence 446678999999999999999999998865 8999874
No 479
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=59.02 E-value=36 Score=37.50 Aligned_cols=111 Identities=21% Similarity=0.307 Sum_probs=66.7
Q ss_pred hCCcCCCceEEEECcchhhHHHHHHHHHcCCC----------CccEEEEcCCccccCCCCCCCcHHHHHhccccC-----
Q psy14495 188 VKKKMKDCKLVVSGAGAAALACLDLIIDLGFP----------LQNIFVTDLAGVLYKGRSELMDSNKARFIKDTT----- 252 (766)
Q Consensus 188 ~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~----------~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~----- 252 (766)
.+...+-.++++.|+|-+|+..+..-...|.- .|++--.-.+++-.++- +..--||+...
T Consensus 158 Aagtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~e-----e~~gGYAk~ms~~~~~ 232 (356)
T COG3288 158 AAGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDE-----ESAGGYAKEMSEEFIA 232 (356)
T ss_pred hcccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhccccccccccc-----ccCCCccccCCHHHHH
Confidence 56777888999999999998776554444421 01111001111111000 01122333211
Q ss_pred --CCCHHHHhccCcEEEecCC-CC-----CCCHHHHHhhccCcEEEeccCCC---CccCHhh
Q psy14495 253 --ARTLSDIIPNADIFLGLSV-SG-----VLKKEMVLQMAKNPIILALANPL---PEILPED 303 (766)
Q Consensus 253 --~~~L~e~i~~~~vliG~S~-~g-----~ft~evv~~M~~~PiIfaLsNPt---~E~~pe~ 303 (766)
..-+.|-+++.|+.|=+.- || +.|+|||++|.+..+|.=|+--+ .|+|-.+
T Consensus 233 ~q~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg 294 (356)
T COG3288 233 KQAELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPG 294 (356)
T ss_pred HHHHHHHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCcccccCC
Confidence 1236777888899887653 44 89999999999999999998765 5766443
No 480
>PLN02985 squalene monooxygenase
Probab=58.94 E-value=12 Score=44.02 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=29.8
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.+.+|+|+|||.||+..|..|.+.|.+ +.++|++
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~ 75 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRR---VHVIERD 75 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCe---EEEEECc
Confidence 345899999999999999999999976 8888875
No 481
>PRK06270 homoserine dehydrogenase; Provisional
Probab=58.93 E-value=56 Score=36.39 Aligned_cols=95 Identities=12% Similarity=0.198 Sum_probs=57.6
Q ss_pred ceEEEECcchhhHHHHHHHHHc--------CCCCccEEEEcCCccccCCCCCCCcHHHHHhccc----cC------CCCH
Q psy14495 195 CKLVVSGAGAAALACLDLIIDL--------GFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD----TT------ARTL 256 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~--------g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~----~~------~~~L 256 (766)
.||.++|.|..|-+.+++|.+. |+.-+=.-++|++|.++..++-++..++ .++.. .. ..++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELAL-KVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHH-HHHhccCCcccCccccccCCH
Confidence 5899999999999999998753 4443335578999998876632222221 12221 11 1378
Q ss_pred HHHhcc--CcEEEecCCCC----CCCHHHH-Hhhc-cCcEEE
Q psy14495 257 SDIIPN--ADIFLGLSVSG----VLKKEMV-LQMA-KNPIIL 290 (766)
Q Consensus 257 ~e~i~~--~~vliG~S~~g----~ft~evv-~~M~-~~PiIf 290 (766)
.|.++. +||++=++.+. ....+++ +.+. ..++|.
T Consensus 82 ~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 888864 58888766432 2224443 3333 466665
No 482
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=58.60 E-value=69 Score=34.75 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=32.2
Q ss_pred HHHHhHhCCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 182 LNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 182 l~al~~~~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
+.+++.. .--.+.+++|.|+|+.|..++.++...|.. ++.+++
T Consensus 153 ~~~~~~~-~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~---vi~~~~ 195 (333)
T cd08296 153 FNALRNS-GAKPGDLVAVQGIGGLGHLAVQYAAKMGFR---TVAISR 195 (333)
T ss_pred HHHHHhc-CCCCCCEEEEECCcHHHHHHHHHHHHCCCe---EEEEeC
Confidence 4455544 333567999999999999988888999975 777765
No 483
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=58.40 E-value=12 Score=42.13 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=30.4
Q ss_pred CCceEEEECcchhhHHHHHHHHHc-CCCCccEEEEcCCc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDL-GFPLQNIFVTDLAG 230 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~-g~~~~~i~~~D~~G 230 (766)
++..|+|+|||.+|+.+|..|.+. |.. ++.++|+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~--~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGIT--NVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCC--eEEEEEccc
Confidence 455799999999999999999984 864 699999864
No 484
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=58.38 E-value=8.8 Score=40.64 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=35.6
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
.++|++-|++++|+|.-|..++..|..+|+. +++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~aGvg--~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALAGVG--KLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHcCCC--eEEEEcCC
Confidence 4578899999999999999999999999998 79999986
No 485
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=58.06 E-value=16 Score=38.96 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=53.1
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCC-CCccEEEEcCCccccCCCCCCCcHHHHHhccccCCCCHHHHhccCcEEEecC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGF-PLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLS 270 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~-~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~~~~~~L~e~i~~~~vliG~S 270 (766)
+++.||.|+|+|.-|-+++.-|.+.|. .++++|.+|++- .+ +. + ....+..++++.+|++| ++
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~----~~---~~-----~---~~~~~~~~~~~~~D~Vi-la 64 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSK----KN---TP-----F---VYLQSNEELAKTCDIIV-LA 64 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCCh----hc---CC-----e---EEeCChHHHHHhCCEEE-EE
Confidence 356799999999999999999998874 455799888731 11 10 0 01123555666676544 33
Q ss_pred CCCCCCHHHHHhhc---cCcEEEeccCCCC
Q psy14495 271 VSGVLKKEMVLQMA---KNPIILALANPLP 297 (766)
Q Consensus 271 ~~g~ft~evv~~M~---~~PiIfaLsNPt~ 297 (766)
.+..-.+++++... ...+|..+.+-..
T Consensus 65 vkp~~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 65 VKPDLAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred eCHHHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 32223445555544 2234555555443
No 486
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=57.75 E-value=12 Score=43.02 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=28.7
Q ss_pred ceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
--++|+|+|+||+..|..+.+.|.+ +.++|+.
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~ 34 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHGAK---ALLVEAK 34 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCc---EEEeccc
Confidence 4689999999999999999999975 8899975
No 487
>PRK13984 putative oxidoreductase; Provisional
Probab=57.41 E-value=12 Score=44.67 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=30.3
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+..+++|+|+|.||+..|..|.+.|.+ +.++|+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~ 315 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESL 315 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecC
Confidence 567899999999999999999999976 8888775
No 488
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=57.39 E-value=12 Score=42.99 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=30.5
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
.+..|||+|+|.||+..|-.+.+.|.+ +.++++..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~---V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGAS---VLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 456799999999999999999999986 88888764
No 489
>PTZ00367 squalene epoxidase; Provisional
Probab=57.28 E-value=23 Score=42.25 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=33.2
Q ss_pred HhCCcC---CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 187 LVKKKM---KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 187 ~~~~~l---~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
...+|. .+.+|+|+|||.+|...|..|.+.|.+ +.++++..
T Consensus 23 ~~~~~~~~~~~~dViIVGaGiaGlalA~aLar~G~~---V~VlEr~~ 66 (567)
T PTZ00367 23 LRFKPARTNYDYDVIIVGGSIAGPVLAKALSKQGRK---VLMLERDL 66 (567)
T ss_pred HccCccccccCccEEEECCCHHHHHHHHHHHhcCCE---EEEEcccc
Confidence 344554 456899999999999999999999975 88888764
No 490
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.24 E-value=14 Score=42.32 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=31.1
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
++..+++|+|+|..|.++|+.|.+.|.+ +++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~---V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGAN---VTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCE---EEEEcCC
Confidence 5677999999999999999999999976 8888864
No 491
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=57.21 E-value=59 Score=39.93 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=28.1
Q ss_pred ceEEEECcchhhHHHHHHHH-HcCCCCccEEEEcCC
Q psy14495 195 CKLVVSGAGAAALACLDLII-DLGFPLQNIFVTDLA 229 (766)
Q Consensus 195 ~~iv~~GaG~ag~gia~~l~-~~g~~~~~i~~~D~~ 229 (766)
.||.|+|||..|.|||.++. ..|+. ++++|.+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~---V~l~d~~ 337 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIP---VRIKDIN 337 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCe---EEEEeCC
Confidence 48999999999999999987 58987 8888875
No 492
>PRK07589 ornithine cyclodeaminase; Validated
Probab=57.10 E-value=1.1e+02 Score=34.42 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=65.6
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCCccccCCCCCCCcHHHHHhccc----cCCCCHHHHhccCcEEEe
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKD----TTARTLSDIIPNADIFLG 268 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~Glv~~~r~~~l~~~k~~~a~~----~~~~~L~e~i~~~~vliG 268 (766)
.-.++.|+|+|.-+...++.+... .+-++|+++|+. . +....+...+.+. ....+++++++++||++-
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~v-r~i~~V~v~~r~----~---~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvt 199 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKAL-LGIEEIRLYDID----P---AATAKLARNLAGPGLRIVACRSVAEAVEGADIITT 199 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHh-CCceEEEEEeCC----H---HHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEE
Confidence 346899999999998888777653 134588888762 1 1223333333221 113689999999999998
Q ss_pred cCC--C--CCCCHHHHHhhccCcEEEeccCCC---CccCHhhHh
Q psy14495 269 LSV--S--GVLKKEMVLQMAKNPIILALANPL---PEILPEDIK 305 (766)
Q Consensus 269 ~S~--~--g~ft~evv~~M~~~PiIfaLsNPt---~E~~pe~a~ 305 (766)
+.. . -.|..++++. .--|-++--.+ .|+.++-..
T Consensus 200 aT~S~~~~Pvl~~~~lkp---G~hV~aIGs~~p~~~Eld~~~l~ 240 (346)
T PRK07589 200 VTADKTNATILTDDMVEP---GMHINAVGGDCPGKTELHPDILR 240 (346)
T ss_pred ecCCCCCCceecHHHcCC---CcEEEecCCCCCCcccCCHHHHh
Confidence 753 2 4588888744 44566665434 399987543
No 493
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=56.90 E-value=81 Score=34.33 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=29.6
Q ss_pred CCcCCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 189 KKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 189 ~~~l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
..--.+++++|.|+|+.|..+++++...|.. .++.+++
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~--~v~~~~~ 195 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGAT--KVVVTDI 195 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECC
Confidence 4445678999999999898888888888865 4776654
No 494
>KOG1399|consensus
Probab=56.77 E-value=11 Score=43.61 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCC
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFP 219 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~ 219 (766)
.-.+++|+|||+||+..|+-|.++|..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~ 31 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHE 31 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCC
Confidence 356899999999999999999999987
No 495
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=56.67 E-value=14 Score=35.37 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.2
Q ss_pred EEEECcchhhHHHHHHHHHcCCCCccEEEEcCCc
Q psy14495 197 LVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAG 230 (766)
Q Consensus 197 iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~G 230 (766)
|+|+|+|+.|.-+|..|.+.|.+ ++++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~---V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD---VTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE---EEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCc---eEEEEccc
Confidence 78999999999999999998866 88888755
No 496
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=56.56 E-value=13 Score=42.76 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=29.3
Q ss_pred CceEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 194 d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
+..|+|+|||+||+.+|..+.+.|.+ +.++|++
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~---v~liE~~ 37 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKR---VAVIERY 37 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCE---EEEEecc
Confidence 45799999999999999999999964 9999985
No 497
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=56.54 E-value=17 Score=38.80 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=32.0
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCC-----C--c-cEEEEcCCcc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFP-----L--Q-NIFVTDLAGV 231 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~-----~--~-~i~~~D~~Gl 231 (766)
+..||+++|+|.-|.-+++.|.+.|+. . . +|.++|.+=+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 567999999999999999999998642 1 1 7999998743
No 498
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.52 E-value=12 Score=42.95 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=28.2
Q ss_pred eEEEECcchhhHHHHHHHHHcCCCCccEEEEcCC
Q psy14495 196 KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229 (766)
Q Consensus 196 ~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~~ 229 (766)
||+|+|+|.+|+++|++|.+.|.. +.++|++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~---V~~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWE---VVVSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCE---EEEECCC
Confidence 799999999999999999999975 8888874
No 499
>PLN02568 polyamine oxidase
Probab=56.31 E-value=13 Score=44.03 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCceEEEECcchhhHHHHHHHHHcCCC--CccEEEEcCCc
Q psy14495 193 KDCKLVVSGAGAAALACLDLIIDLGFP--LQNIFVTDLAG 230 (766)
Q Consensus 193 ~d~~iv~~GaG~ag~gia~~l~~~g~~--~~~i~~~D~~G 230 (766)
+..+|+|+|||.||+++|..|.+.|.. ..++.++++.-
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~ 43 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGD 43 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCC
Confidence 446899999999999999999998832 13588888754
No 500
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=56.13 E-value=87 Score=33.65 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=28.2
Q ss_pred CCCceEEEECcchhhHHHHHHHHHcCCCCccEEEEcC
Q psy14495 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228 (766)
Q Consensus 192 l~d~~iv~~GaG~ag~gia~~l~~~g~~~~~i~~~D~ 228 (766)
-.+++++|.|+|+.|..+++++...|+. +++++++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~--~v~~~~~ 192 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGAS--RVTVAEP 192 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECC
Confidence 4568999999999998888888888865 5776655
Done!