RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14495
(766 letters)
>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme
oxidoreductase/phosphotransacetylase; Reviewed.
Length = 752
Score = 1298 bits (3362), Expect = 0.0
Identities = 454/750 (60%), Positives = 582/750 (77%), Gaps = 4/750 (0%)
Query: 14 QSALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNL 73
Q+AL+YH FP PGKI V P+K L+ Q DL+LAYSPGVA+ C EI + + +KYT +GNL
Sbjct: 5 QAALDYHRFPRPGKIEVTPTKPLATQRDLSLAYSPGVAAPCLEIAKDPADAYKYTARGNL 64
Query: 74 VAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFSL 133
VAVI+NGTAVLG+GNIG LASKPVMEGK VLFKKFAGIDVFD+E++E DPDK + + +L
Sbjct: 65 VAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAGIDVFDIEVDEEDPDKFIEAVAAL 124
Query: 134 EPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMK 193
EPTFGGINLEDIKAPECFYIE+KLR M IPVFHDDQHGTAII +A+LN L+LV KK++
Sbjct: 125 EPTFGGINLEDIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIE 184
Query: 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTA 253
D K+VVSGAGAAA+ACL+L++ LG +NI V D GV+YKGR+E MD KA + DT A
Sbjct: 185 DVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDA 244
Query: 254 RTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRNDAII 313
RTL++ I AD+FLGLS +GVL EMV MA NPII ALANP PEI PE+ K+VR DAII
Sbjct: 245 RTLAEAIEGADVFLGLSAAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRPDAII 304
Query: 314 ATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTY 373
ATGRSDYPNQVNNVLCFPYIFRGALD GATTI EM++AAV AIA+LA+ E SD V Y
Sbjct: 305 ATGRSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELAREEVSDEVAAAY 364
Query: 374 GITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGVATKPIKDIEIYTNHLQKFVYRS 433
G ++FG E IIPKPFDPRL++KIAPAVA AA SGVAT+PI D++ Y L+ FVY++
Sbjct: 365 GGQKLSFGPEYIIPKPFDPRLIVKIAPAVAKAAMDSGVATRPIADMDAYREKLEAFVYKT 424
Query: 434 SAFMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIK 493
M PIF KA+K+ KR++++EGEEE++LRA Q V+DE LA PILIGR +++E IK
Sbjct: 425 GLVMKPIFA---KAKKDPKRVVFAEGEEERVLRAAQEVVDEGLAKPILIGRPEVIEARIK 481
Query: 494 KLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAI 553
KL L +K G+ FEI++P+ + +Y++YW+ Y + RKG+ + A+ +R+ T+IGAM +
Sbjct: 482 KLGLDLKAGVDFEIVNPEDDPRYEEYWQYYYELLQRKGVTPEDARRLVRRDRTVIGAMMV 541
Query: 554 HKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENP 613
+G+AD MICG+ G HL + Q+IG + + AAM+ L+L L + DT++NE+P
Sbjct: 542 ARGDADAMICGLTGRYHEHLRPVRQVIGLRPGVHTAAAMNALLLKGGNLFIADTYVNEDP 601
Query: 614 NAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEI 673
AEEL+EI ++AA+++ G++PRVALLS+SNFGS+++ SA KMR A++L++++ P+LE+
Sbjct: 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELLRERAPDLEV 661
Query: 674 DGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPIL 733
DGEM+G+ ALN E+ P S+L G AN+LV+PN+E+ANI+YNLLK G GV IGPIL
Sbjct: 662 DGEMHGDAALNEEIRKDLYPFSRLKGPANVLVMPNLEAANISYNLLKEL-GGGVTIGPIL 720
Query: 734 LGCSKPIHILTSSATVRRIVNMTALCVIDA 763
LG +KP+HILT SATVRRIVNMTAL V+DA
Sbjct: 721 LGMAKPVHILTPSATVRRIVNMTALAVVDA 750
>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed.
Length = 763
Score = 1285 bits (3329), Expect = 0.0
Identities = 472/750 (62%), Positives = 610/750 (81%), Gaps = 3/750 (0%)
Query: 14 QSALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNL 73
++AL+YH FP PGKI + P+K L+NQ DLALAYSPGVA+ C EI ++ N +YT++GNL
Sbjct: 13 EAALDYHRFPTPGKIEIAPTKPLANQRDLALAYSPGVAAPCLEIAADPANAARYTSRGNL 72
Query: 74 VAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFSL 133
VAV++NGTAVLG+GNIGPLASKPVMEGKAVLFKKFAGIDVFD+E++E+DPDKL +I+ +L
Sbjct: 73 VAVVSNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIELDESDPDKLVEIVAAL 132
Query: 134 EPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMK 193
EPTFGGINLEDIKAPECFYIE++LR MKIPVFHDDQHGTAIIV +A+LNGLKLV K ++
Sbjct: 133 EPTFGGINLEDIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIE 192
Query: 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTA 253
D KLV SGAGAAALACLDL++ LG +NI+VTD+ GV+Y+GR+ELMD KAR+ + T A
Sbjct: 193 DVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDA 252
Query: 254 RTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRNDAII 313
RTL+++I AD+FLGLS +GVLK EMV +MA P+I ALANP PEILPE+ ++VR DAII
Sbjct: 253 RTLAEVIEGADVFLGLSAAGVLKPEMVKKMAPRPLIFALANPTPEILPEEARAVRPDAII 312
Query: 314 ATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTY 373
ATGRSDYPNQVNNVLCFPYIFRGALD GATTI EM+IAAV AIA+LA+ EQSD+V Y
Sbjct: 313 ATGRSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELAREEQSDVVAAAY 372
Query: 374 GITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGVATKPIKDIEIYTNHLQKFVYRS 433
G +++FG + +IPKPFDPRL++KIAPAVA AA SGVAT+PI+D++ Y L +FVY S
Sbjct: 373 GGEDLSFGPDYLIPKPFDPRLILKIAPAVAQAAMDSGVATRPIEDMDAYREQLNQFVYHS 432
Query: 434 SAFMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIK 493
M P+F AK A KR++++EGE+E++LRA QVV+DE LA PILIGR ++E I+
Sbjct: 433 GLIMKPVFAAAKAAP---KRVVFAEGEDERVLRAAQVVVDEGLAKPILIGRPAVIEARIE 489
Query: 494 KLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAI 553
+ LR++PG+ FEI++P+ + +Y+DYW TY ++ RKG+ + A+ ++R+ TLIGAM +
Sbjct: 490 RAGLRLRPGVDFEIVNPEDDPRYRDYWDTYHALMGRKGVTPEMARREVRRRTTLIGAMMV 549
Query: 554 HKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENP 613
+G AD MICG G + HL ++ Q+IGK+ +YAAMS LIL R L L DTH+NE+P
Sbjct: 550 KRGEADAMICGTEGRYERHLEFVLQVIGKRPGVRVYAAMSLLILPGRTLFLADTHVNEDP 609
Query: 614 NAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEI 673
AEEL+EITILAA+++ G++P+VALLS+SNFGS+++ SA KMR AL++++++ P+LE+
Sbjct: 610 TAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEILRERAPDLEV 669
Query: 674 DGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPIL 733
DGEM+G+ AL+ EL + P+S+L G+ANLLV PN+++ANIAYNLLK +GNG+A+GPIL
Sbjct: 670 DGEMHGDAALDEELRDRIFPDSRLEGEANLLVFPNLDAANIAYNLLKTAAGNGLAVGPIL 729
Query: 734 LGCSKPIHILTSSATVRRIVNMTALCVIDA 763
LG +KP+HILT SATVRRIVNMTAL V DA
Sbjct: 730 LGAAKPVHILTPSATVRRIVNMTALAVADA 759
>gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed.
Length = 764
Score = 1123 bits (2906), Expect = 0.0
Identities = 460/756 (60%), Positives = 598/756 (79%), Gaps = 2/756 (0%)
Query: 10 KKSHQSALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTT 69
+ Q+AL+YHEFP PGKISV+ SK L Q DLALAY+PGVASACEEI ++ N F++T+
Sbjct: 5 ETQRQAALDYHEFPTPGKISVVASKPLVTQRDLALAYTPGVASACEEIAADPLNAFRFTS 64
Query: 70 KGNLVAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDI 129
+GNLV VITNGTAVLG+GNIG LASKPVMEGKAVLFKKFAGIDVFD+EINETDPDKL DI
Sbjct: 65 RGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGIDVFDIEINETDPDKLVDI 124
Query: 130 IFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVK 189
I LEPTFGGINLEDIKAPECF +E+KLR MKIPVFHDDQHGTAI V +A +NGLK+V
Sbjct: 125 IAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVG 184
Query: 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK 249
K +K+ K+V SGAGAAALACLDL++DLG P++NI+VTD+ GV+Y+GR+ LMD +K RF +
Sbjct: 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQ 244
Query: 250 DTTARTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRN 309
+T ARTL+++I AD+FLGLS GVLK EM+ MA P+ILALANP PEI PE + R+
Sbjct: 245 ETDARTLAEVIGGADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPELAHATRD 304
Query: 310 DAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIV 369
D +IATGRSDYPNQVNNVLCFPYIFRGALD GATTITREMEIAAVHAIA LA+ EQ+D+V
Sbjct: 305 DVVIATGRSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAEEEQNDVV 364
Query: 370 NTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGVATKPIKDIEIYTNHLQKF 429
YG +++FG + +IPKPFDPRL+++IAPAVA AA + GVAT+PI D++ Y LQ+F
Sbjct: 365 AAAYGAYDVSFGPQYLIPKPFDPRLIVRIAPAVAKAAMEGGVATRPIADLDAYVEQLQQF 424
Query: 430 VYRSSAFMNPIFQIAKKARKN--IKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKI 487
VY S AFM P+F A++ ++ RI+++EGE+E++LRA+QV++DE LA PIL+GR ++
Sbjct: 425 VYHSGAFMKPLFAAARQLVRDGGKARIVFTEGEDERVLRAVQVIVDEKLARPILVGRPEV 484
Query: 488 LEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTL 547
L I++ LR++ G E+ +P++++++ YW TY + R G+ ++ A+++MR+ TL
Sbjct: 485 LLARIERFGLRLRLGQDVEVTNPEYDERFPQYWTTYWELRCRDGISKEMARVEMRRRLTL 544
Query: 548 IGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDT 607
IGAM + G+ADGMICG +G HL ++D++IG+K + YAAM+ L+L R + LVDT
Sbjct: 545 IGAMMVRLGDADGMICGTVGEYHNHLRFVDEVIGRKPGASTYAAMNILLLDQRTVALVDT 604
Query: 608 HINENPNAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQ 667
H+N+NP+AE+++E TI AA++M L L P+VALLS SNFGS + S KMR AL+++++Q
Sbjct: 605 HVNDNPDAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIVREQ 664
Query: 668 MPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGV 727
P+LE DGEM+G+ AL+ L + +P S L G ANLLV PN+++ NIAYNLLK +G+ V
Sbjct: 665 APDLEADGEMHGDCALDEGLRARLLPMSPLKGAANLLVCPNVDAGNIAYNLLKTEAGSNV 724
Query: 728 AIGPILLGCSKPIHILTSSATVRRIVNMTALCVIDA 763
A+GP LLG + P++ILTSSATVRRIVNM AL VI+A
Sbjct: 725 AVGPFLLGVNAPVNILTSSATVRRIVNMAALTVIEA 760
>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion].
Length = 432
Score = 588 bits (1519), Expect = 0.0
Identities = 231/430 (53%), Positives = 292/430 (67%), Gaps = 18/430 (4%)
Query: 13 HQSALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGN 72
AL+ HE+ PGKI + P+ L Q+DL LAY+PGVA AC+ I + + YT +GN
Sbjct: 18 KTEALDKHEYLDPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAYSYTARGN 77
Query: 73 LVAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFS 132
LVAV+T+GTAVLG+GNIGPLA KPVMEGKAVLFK FAGIDV +E++ +++ + + +
Sbjct: 78 LVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGIDVLPIELDVGTNNEIIEFVKA 137
Query: 133 LEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKM 192
LEPTFGGINLEDI AP CF IE++LR M IPVFHDDQ GTAI+ +A+LN LKL KK+
Sbjct: 138 LEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKL 197
Query: 193 KDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSEL-MDSNKARF-IKD 250
KD K+V++GAGAA +A DL++ G +NIFV D G+LY GR +L M+ K I+D
Sbjct: 198 KDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIED 257
Query: 251 TTARTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRND 310
T RTL + AD+ +G+S G +EMV +MAK+PII ALANP PEI PED K +
Sbjct: 258 TGERTLDLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWGDG 317
Query: 311 -AIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIV 369
AI+ATGRSDYPNQVNNVL FP IFRGALD A TIT EM+IAA AIADLA+ E +
Sbjct: 318 AAIVATGRSDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVLE-- 375
Query: 370 NTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGVATKPIKDIEIYTNHLQKF 429
E IIP PFDPR++ ++A AVA AA + GVA +PI D E Y L+
Sbjct: 376 -------------EYIIPPPFDPRVISRVAVAVAKAAMEEGVARRPIDDEEAYEQALEAR 422
Query: 430 VYRSSAFMNP 439
+++ M
Sbjct: 423 LWKPEYRMKR 432
>gnl|CDD|223357 COG0280, Pta, Phosphotransacetylase [Energy production and
conversion].
Length = 327
Score = 331 bits (851), Expect = e-108
Identities = 126/329 (38%), Positives = 201/329 (61%), Gaps = 6/329 (1%)
Query: 440 IFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRI 499
++++ ++ARK KRI+ EGEEE++LRA QV+ E LA PIL+GR + +E+ K L L +
Sbjct: 2 LYRLFERARKAPKRIVLPEGEEERVLRAAQVLAKEGLAKPILVGRPEEIEEVAKALGLDL 61
Query: 500 KPGIHFEIIDP-DFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNA 558
EII+P +++++Y + RKG+ + AQ +R+ T+ AM + G A
Sbjct: 62 D---GIEIINPELDPERFEEYVDRLYELRKRKGVTPEDAQELVREDPTVFAAMMVALGEA 118
Query: 559 DGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEEL 618
DG++ G + +T L QIIG + ++ +++ ++L D L D +N +P AEEL
Sbjct: 119 DGLVSGAVHTTADTLRPALQIIGTRPGVSLVSSVFIMLLPDGTLFFADCAVNPDPTAEEL 178
Query: 619 SEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQ-KQMPELEIDGEM 677
++I AA+ G++P+VALLS S FGS S K+R A K+++ + P+LE+DGE+
Sbjct: 179 ADIAENAAETARRFGIEPKVALLSYSTFGSGKGPSTDKVREATKILRERAPPDLEVDGEL 238
Query: 678 NGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCS 737
+ AL ++ K+ P+S L G AN+LV P++E+ NI Y LL+ G +A+GPIL G +
Sbjct: 239 QFDAALVEKVAAKKAPDSPLAGSANVLVFPDLEAGNIGYKLLQ-RLGGALAVGPILQGLA 297
Query: 738 KPIHILTSSATVRRIVNMTALCVIDALSK 766
KP++ L+ A+V IVNM AL + A +K
Sbjct: 298 KPVNDLSRGASVEDIVNMAALAAVQAQTK 326
>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain. Malic
enzymes (malate oxidoreductases) catalyse the oxidative
decarboxylation of malate to form pyruvate.
Length = 231
Score = 318 bits (819), Expect = e-104
Identities = 107/242 (44%), Positives = 145/242 (59%), Gaps = 17/242 (7%)
Query: 170 QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229
Q GTAI+V + +LN LK+ KK++D ++VV+GAGAA + L++ G +NI++ D
Sbjct: 1 QQGTAIVVLAGLLNALKITGKKLEDQRIVVNGAGAAGIGIAKLLVAAGVKRKNIWLVDSK 60
Query: 230 GVLYKGRSELMDSNKARFIKDTTAR---TLSDIIPNADIFLGLS-VSGVLKKEMVLQMAK 285
G+L KGR + ++ K F + T R TL + + AD+ +G+S G +EMV MA+
Sbjct: 61 GLLTKGREDNLNPYKKPFARKTNERETGTLEEAVKGADVLIGVSGPGGAFTEEMVKSMAE 120
Query: 286 NPIILALANPLPEILPEDIKSVRN-DAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATT 344
PII AL+NP PEI P + R AI+ATGRSDYPNQVNNVL FP IF GALD A
Sbjct: 121 RPIIFALSNPTPEIEPTAADAYRWTAAIVATGRSDYPNQVNNVLIFPGIFLGALDVRARR 180
Query: 345 ITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAI 404
IT EM++AA A+AD ++ G IIP PFD R+ ++A AVA
Sbjct: 181 ITDEMKLAAAEALADA------------VPVSEEELGPGYIIPSPFDRRVSARVAVAVAK 228
Query: 405 AA 406
AA
Sbjct: 229 AA 230
>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic
enzyme (ME), subgroup 2. Malic enzyme (ME), a member of
the amino acid dehydrogenase (DH)-like domain family,
catalyzes the oxidative decarboxylation of L-malate to
pyruvate in the presence of cations (typically Mg++ or
Mn++) with the concomitant reduction of cofactor NAD+ or
NADP+. ME has been found in all organisms, and plays
important roles in diverse metabolic pathways such as
photosynthesis and lipogenesis. This enzyme generally
forms homotetramers. The conversion of malate to
pyruvate by ME typically involves oxidation of malate to
produce oxaloacetate, followed by decarboxylation of
oxaloacetate to produce pyruvate and CO2. This
subfamily consists primarily of archaeal and bacterial
ME. Amino acid DH-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and include
glutamate, leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 226
Score = 292 bits (750), Expect = 3e-94
Identities = 121/241 (50%), Positives = 162/241 (67%), Gaps = 19/241 (7%)
Query: 170 QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLA 229
QHGTAI+ + +LN LKLV KK+++ K+V++GAGAA +A L++ G +NI V D
Sbjct: 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60
Query: 230 GVLYKGRSELMDSNKARFIKDTTAR----TLSDIIPNADIFLGLSVSGVLKKEMVLQMAK 285
GV+Y+GR + ++ +K K+T TL + + AD+F+G+S GV+KKEM+ +MAK
Sbjct: 61 GVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVSRPGVVKKEMIKKMAK 120
Query: 286 NPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTI 345
+PI+ ALANP+PEI PE+ K D I+ATGRSD+PNQVNNVL FP IFRGALD AT I
Sbjct: 121 DPIVFALANPVPEIWPEEAKEAGAD-IVATGRSDFPNQVNNVLGFPGIFRGALDVRATKI 179
Query: 346 TREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIA 405
T EM++AA AIADLA+ E G E IIP PFDPR++ ++A AVA A
Sbjct: 180 TEEMKLAAAEAIADLAEEEVL--------------GEEYIIPTPFDPRVVPRVATAVAKA 225
Query: 406 A 406
A
Sbjct: 226 A 226
>gnl|CDD|216545 pfam01515, PTA_PTB, Phosphate acetyl/butaryl transferase. This
family contains both phosphate acetyltransferase and
phosphate butaryltransferase. These enzymes catalyze the
transfer of an acetyl or butaryl group to
orthophosphate.
Length = 319
Score = 278 bits (712), Expect = 2e-87
Identities = 116/325 (35%), Positives = 186/325 (57%), Gaps = 11/325 (3%)
Query: 436 FMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKL 495
F+ IF ++A+ KRI++ EGE+E++L+A + +++E +A PILIG ++ L
Sbjct: 2 FLERIF---ERAKSAKKRIVFPEGEDERVLKAAKELLEEGIADPILIGNEIEIKAKALGL 58
Query: 496 RLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHK 555
L EI+DP+ + + ++Y Y + KGM + A+ +R T AM +
Sbjct: 59 GLD---LDGIEIVDPETSPRDEEYADEYYELRKHKGMTPEIAREIVRD-PTYFAAMLVKL 114
Query: 556 GNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNA 615
G ADG++ G + +T L QII I +++ ++L DR L D +N NP A
Sbjct: 115 GEADGLVSGAVHTTADTLRPALQIIKTLPGVKIVSSVFIMLLPDRLLFFTDCAVNPNPTA 174
Query: 616 EELSEITILAAK--KMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEI 673
EEL+EI + AAK K F ++PRVA+LS S FGS S K+R A K+ +++ P+L +
Sbjct: 175 EELAEIALNAAKTAKAF-GNIEPRVAMLSYSTFGSGKGESVEKVREATKIAKEKAPDLVV 233
Query: 674 DGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPIL 733
DGE+ + A+ E+ ++ P+S + G AN+LV P++E+ NI Y + + AIGPIL
Sbjct: 234 DGELQLDAAIVEEVAAQKAPDSPVAGKANVLVFPDLEAGNIGYKIAQ-RLAGAEAIGPIL 292
Query: 734 LGCSKPIHILTSSATVRRIVNMTAL 758
G +KP++ L+ A+V IVN A+
Sbjct: 293 QGLAKPVNDLSRGASVEDIVNTIAI 317
>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain.
Length = 255
Score = 239 bits (612), Expect = 1e-73
Identities = 102/269 (37%), Positives = 140/269 (52%), Gaps = 47/269 (17%)
Query: 170 QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDL----GFPLQ---- 221
GTA +V + +LN LK+ K + D K+V GAGAA + +L++ G +
Sbjct: 1 IQGTAAVVLAGLLNALKITGKPLSDQKIVFFGAGAAGIGIAELLVAAMVREGLSEEEARK 60
Query: 222 NIFVTDLAGVLYKGRSELMDSNKARFIKDTTAR----TLSDIIPNA--DIFLGLS-VSGV 274
NI++ D G+L +GR +L + K F + T TL++ + A D+ +G+S V GV
Sbjct: 61 NIWMVDRKGLLTEGREDL-NPFKKPFARKTNEVKGWGTLAEAVKGAKPDVLIGVSGVPGV 119
Query: 275 LKKEMVLQMAKN---PIILALANPLP--EILPEDIKSVRND-AIIATG----------RS 318
+E+V MA++ PII AL+NP P EI PE+ A+ ATG RS
Sbjct: 120 FTEEIVRAMAEHTERPIIFALSNPTPKAEITPEEAYKWTAGRALFATGSPFPPVELNGRS 179
Query: 319 DYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNM 378
DYPNQVNNVL FP I GALD A IT EM +AA A+A+L E+
Sbjct: 180 DYPNQVNNVLIFPGIGLGALDVRARRITDEMFLAAAEALAELVTEEE------------- 226
Query: 379 TFGSECIIPKPFDPR-LMIKIAPAVAIAA 406
G IIP FD R + ++A AVA AA
Sbjct: 227 -LGEGYIIPPLFDIREVSPRVAVAVAKAA 254
>gnl|CDD|236609 PRK09653, eutD, phosphotransacetylase; Reviewed.
Length = 324
Score = 192 bits (491), Expect = 3e-55
Identities = 106/335 (31%), Positives = 177/335 (52%), Gaps = 16/335 (4%)
Query: 437 MNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLR 496
M+ + +KA+ K+I+ EGE+E++L+A + + E L PIL+G + + K+L
Sbjct: 1 MDLFESLKEKAKGKKKKIVLPEGEDERVLKAAKRLQKEGLVEPILLGNPEEIRAKAKELG 60
Query: 497 LRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKG 556
L + EIIDP+ +++ + ++ + KG E A ++ N G M + G
Sbjct: 61 LDLD---GVEIIDPETYPLLEEFAEAFVELRKGKGTEED-AAELLKDPNYF-GTMLVKLG 115
Query: 557 NADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILM---DRQLMLVDTHINENP 613
ADGM+ G + ST L QII K +S++ +M D + + D +N NP
Sbjct: 116 KADGMVSGAIHSTADTLRPALQIIKTKPGVKT---VSSVFIMVKGDERYIFADCAVNPNP 172
Query: 614 NAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEI 673
AE+L+EI I +A+ + G+ P+VA+LS S GS K++ A ++ ++ P+L+I
Sbjct: 173 TAEQLAEIAINSAETAKAFGIDPKVAMLSFSTKGSAKGPEVDKVQEATEIAKELAPDLKI 232
Query: 674 DGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITS--GNGVAIGP 731
DGE+ + A E+ K+ P S + G AN+ V P++E+ NI Y KI G A+GP
Sbjct: 233 DGELQFDAAFVPEVAAKKAPGSPVAGKANVFVFPSLEAGNIGY---KIAQRLGGFEAVGP 289
Query: 732 ILLGCSKPIHILTSSATVRRIVNMTALCVIDALSK 766
IL G +KP++ L+ +V I N+ + A +
Sbjct: 290 ILQGLNKPVNDLSRGCSVEDIYNLALITAAQAQGE 324
>gnl|CDD|233072 TIGR00651, pta, phosphate acetyltransferase. Alternate name:
phosphotransacetylase Model contains a gene from E.coli
coding for ethanolamine utilization protein (euti) and
also contains similarity to malate oxidoreductases
[Central intermediary metabolism, Other, Energy
metabolism, Fermentation].
Length = 303
Score = 190 bits (485), Expect = 7e-55
Identities = 98/307 (31%), Positives = 170/307 (55%), Gaps = 8/307 (2%)
Query: 454 IIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFN 513
I++ EG E ++L+A ++ + +A P+++G + ++ L + H IIDPD +
Sbjct: 1 IVFPEGWEPRVLKAAALLAERGIATPVVLGNPEEIQPKAAGCNLDLG---HVVIIDPDVS 57
Query: 514 KQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHL 573
+ Y + Y+ + KGM E A+ ++R + M + G ADG++ G + +T L
Sbjct: 58 PDRESYAERYVELRKHKGMTEAQARKQLRDESYF-ATMMVALGEADGLVSGAVHTTADTL 116
Query: 574 NYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELSEITILAAK--KMFS 631
QII I +++ + L + L+ D +N +PNAE+L+EI I +A K F
Sbjct: 117 RPALQIIKTLPGVKIVSSVFIMDLGEEVLVFADCAVNPDPNAEQLAEIAIQSANSAKSF- 175
Query: 632 LGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQ 691
++P+VALLS S GS K+R A ++ +++ P+L IDGE+ + A ++ K+
Sbjct: 176 GEIEPKVALLSYSTKGSGKGEEVEKVREATRIAKEKRPDLTIDGELQFDAAFVEKVAEKK 235
Query: 692 IPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVRR 751
PNS + G AN+ V P++++ NI Y +++ G+ AIGPIL G +KP++ L+ +V
Sbjct: 236 APNSPVAGSANVFVFPDLDAGNIGYKIVQ-RLGDAEAIGPILQGLNKPVNDLSRGCSVED 294
Query: 752 IVNMTAL 758
IVN A+
Sbjct: 295 IVNTGAI 301
>gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain.
Length = 182
Score = 134 bits (339), Expect = 4e-36
Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 50/183 (27%)
Query: 25 PGKISVIPSKQLSNQ--DDLALAYSPGVASACEEIVSNSNNVF-KYTTKGNL-------- 73
GK V+ K LS +DL + Y+P V AC+ I YT+ GNL
Sbjct: 1 QGKNEVLFYKLLSTHIEEDLPIVYTPTVGEACQAISEIYRRPRGLYTSIGNLGKIKDILK 60
Query: 74 --------VAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGID---VFDLEINE-- 120
V V+T+G +LG+G++G +A P+MEGK L+ FAGID V + ++
Sbjct: 61 NWPEEDVRVIVVTDGERILGLGDLG-VAGMPIMEGKLALYTAFAGIDPSRVLPIVLDVGT 119
Query: 121 -------------------------TDPDKLCDIIFSLEPTFGGINLEDIKAPECFYIEK 155
D+ + + +L P FGGI ED AP F I +
Sbjct: 120 NNEKLLNDPLYLGLRHKRVRGEEYDEFVDEFVEAVKALFPPFGGIQFEDFGAPNAFEILE 179
Query: 156 KLR 158
+ R
Sbjct: 180 RYR 182
>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional.
Length = 559
Score = 137 bits (347), Expect = 5e-34
Identities = 109/407 (26%), Positives = 172/407 (42%), Gaps = 90/407 (22%)
Query: 42 LALAYSPGVASACEEIVSNSNNVFKY-------TTKGNL-------------VAVITNGT 81
L + Y+P V AC+ SN + KG + V VIT+G+
Sbjct: 102 LPIIYTPTVGEACQNY---SNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGS 158
Query: 82 AVLGMGNIGPLASKPVMEGKAVLFKKFAGID-------VFDLEINE----TDP------- 123
+LG+G++G + GK L+ GI+ V D+ N DP
Sbjct: 159 RILGLGDLG-ANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLRE 217
Query: 124 ------------DKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQH 171
D+ + + S P + ED CF + ++ +N K F+DD
Sbjct: 218 KRLDDDEYYELLDEFMEAVSSRWPN-AVVQFEDFSNNHCFDLLERYQN--KYRCFNDDIQ 274
Query: 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDL----GFPLQ----NI 223
GT ++ + LN LKL ++ ++V GAG+AA+ + I DL G + +
Sbjct: 275 GTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSF 334
Query: 224 FVTDLAGVLYKGRSELMDSNKARFI------KDTTARTLSDIIPNA--DIFLGLS-VSGV 274
++ D G++ R + + +K F +D++ +TL D++ LGLS V GV
Sbjct: 335 YLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGV 394
Query: 275 LKKEMVLQMAKN---PIILALANP--LPEILPEDI-KSVRNDAIIATG----------RS 318
+E+V MA N PII L+NP E ED K AI+A+G ++
Sbjct: 395 FTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKT 454
Query: 319 DYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQ 365
P+Q NN+ FP + G + + I EM IAA ++A L E
Sbjct: 455 IQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLVSEED 501
>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic
enzyme (ME), subgroup 1. Malic enzyme (ME), a member of
the amino acid dehydrogenase (DH)-like domain family,
catalyzes the oxidative decarboxylation of L-malate to
pyruvate in the presence of cations (typically Mg++ or
Mn++) with the concomitant reduction of cofactor NAD+ or
NADP+. ME has been found in all organisms, and plays
important roles in diverse metabolic pathways such as
photosynthesis and lipogenesis. This enzyme generally
forms homotetramers. The conversion of malate to
pyruvate by ME typically involves oxidation of malate to
produce oxaloacetate, followed by decarboxylation of
oxaloacetate to produce pyruvate and CO2. This
subfamily consists of eukaryotic and bacterial ME.
Amino acid DH-like NAD(P)-binding domains are members of
the Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 279
Score = 127 bits (322), Expect = 8e-33
Identities = 86/284 (30%), Positives = 132/284 (46%), Gaps = 48/284 (16%)
Query: 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDL----GFPLQ----NI 223
GTA + + +L L++ K + D +++ GAG+A + DLI+ G + I
Sbjct: 3 GTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKI 62
Query: 224 FVTDLAGVLYKGRSELMDSNKARFIKDTTAR---TLSDIIPNA--DIFLGLS-VSGVLKK 277
++ D G+L K R +L K F + + +L +++ + +GLS V G +
Sbjct: 63 WLVDSKGLLTKDRKDL-TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTE 121
Query: 278 EMVLQMAKN---PIILALANPLP--EILPEDI-KSVRNDAIIATG----------RSDYP 321
E+V MAK+ PII AL+NP E ED K A+ A+G ++ P
Sbjct: 122 EVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVP 181
Query: 322 NQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFG 381
Q NN FP I GA+ SGA IT EM +AA A+A L E+
Sbjct: 182 GQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEE--------------LA 227
Query: 382 SECIIPKPFDPR-LMIKIAPAVAIAAEKSGVATK--PIKDIEIY 422
+ P + R + +IA AVA A + G+AT+ P +D+E Y
Sbjct: 228 RGRLYPPLSNIREISAQIAVAVAKYAYEEGLATRYPPPEDLEEY 271
>gnl|CDD|235537 PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.
Length = 684
Score = 132 bits (334), Expect = 7e-32
Identities = 101/333 (30%), Positives = 173/333 (51%), Gaps = 26/333 (7%)
Query: 441 FQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIK 500
+Q+ ++AR KRI+ EG+E + L+A + ++ +A +L+G + + + + +
Sbjct: 367 YQLTERARAAKKRIVLPEGDEPRTLKAAAICLERGIADCVLLGNPEEIRRVAAAQGVDLP 426
Query: 501 PGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADG 560
GI EIIDP ++ Y + + KGM E+ A+ ++ N G M + G DG
Sbjct: 427 AGI--EIIDPSEVRE--RYVAPLVELRKHKGMTEEVAREQLED-NVYFGTMMLALGEVDG 481
Query: 561 MICGILGSTKLHLNYID---QIIGKKNKTNIYAAMSNLILM---DRQLMLVDTHINENPN 614
++ G + +T N I Q+I K + +S++ M D+ L+ D +N +P
Sbjct: 482 LVSGAVHTTA---NTIRPALQLI--KTAPG-SSLVSSVFFMLLPDQVLVYGDCAVNPDPT 535
Query: 615 AEELSEITILAAK--KMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELE 672
AE+L+EI I +A F G++PRVA+LS S S + K+R A +L +++ P+L
Sbjct: 536 AEQLAEIAIQSADSAAAF--GIEPRVAMLSYSTGTSGSGADVEKVREATRLARERRPDLL 593
Query: 673 IDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKIT--SGNGVAIG 730
IDG + + A++ + + PNS + G A + + P++ + N Y K S V+IG
Sbjct: 594 IDGPLQYDAAVDPSVARSKAPNSPVAGRATVFIFPDLNTGNTTY---KAVQRSAGAVSIG 650
Query: 731 PILLGCSKPIHILTSSATVRRIVNMTALCVIDA 763
P+L G KP++ L+ A V IVN A+ I A
Sbjct: 651 PMLQGLRKPVNDLSRGALVDDIVNTIAITAIQA 683
>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional.
Length = 563
Score = 122 bits (309), Expect = 4e-29
Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 56/317 (17%)
Query: 143 EDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGA 202
ED I ++ R+ +I F+DD GT + + +L LK+ + + D ++V GA
Sbjct: 246 EDFAQKNARRILERYRD--EICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGA 303
Query: 203 GAAALACLDLIIDL----GFP----LQNIFVTDLAGVLYKGRSELMDSNKARFIKD---- 250
G+A D I+ G + F+ D G+L +L+D K + +
Sbjct: 304 GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQK-PYARKREEL 362
Query: 251 ------TTARTLSDIIPNA--DIFLGLS-VSGVLKKEMVLQMAKN---PIILALANP--L 296
+L +++ N + +G+S G +E+V +MA + PII L+NP
Sbjct: 363 ADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSR 422
Query: 297 PEILPED-IKSVRNDAIIATG----------RSDYPNQVNNVLCFPYIFRGALDSGATTI 345
E PED I A++ATG ++ Q NN FP + G + SGA +
Sbjct: 423 AEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRV 482
Query: 346 TREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPR-LMIKIAPAVAI 404
T M +AA HA+AD + G ++P D R + IA AVA
Sbjct: 483 TDGMLMAAAHALAD-----CVPLAKP---------GEGALLPPVEDIREVSRAIAIAVAK 528
Query: 405 AAEKSGVATKP-IKDIE 420
AA + G+A + +D+E
Sbjct: 529 AAIEEGLARETSDEDLE 545
>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme.
Malic enzyme (ME), a member of the amino acid
dehydrogenase (DH)-like domain family, catalyzes the
oxidative decarboxylation of L-malate to pyruvate in the
presence of cations (typically Mg++ or Mn++) with the
concomitant reduction of cofactor NAD+ or NADP+. ME has
been found in all organisms and plays important roles in
diverse metabolic pathways such as photosynthesis and
lipogenesis. This enzyme generally forms homotetramers.
The conversion of malate to pyruvate by ME typically
involves oxidation of malate to produce oxaloacetate,
followed by decarboxylation of oxaloacetate to produce
pyruvate and CO2. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 254
Score = 107 bits (268), Expect = 6e-26
Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 30/219 (13%)
Query: 170 QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLG--------FPLQ 221
GTA + + +L LK+ KKK+ + K++ +GAGAAAL +LI+ L +
Sbjct: 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACK 60
Query: 222 NIFVTDLAGVLYKGRSELMDS--NKARFIKD-TTARTLSDII--PNADIFLGLS-VSGVL 275
I+ D G+L K R E + + ARF + L D + D +G+S V G
Sbjct: 61 RIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAF 120
Query: 276 KKEMVLQMA---KNPIILALANPLP--EILPEDIKSVRN-DAIIATGRSD---------- 319
E++ A + P+I AL+NP E E+ + AI A+G
Sbjct: 121 TPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTY 180
Query: 320 YPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIA 358
P Q NN+ FP + G + IT ++ ++A AIA
Sbjct: 181 KPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIA 219
>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional.
Length = 581
Score = 110 bits (278), Expect = 3e-25
Identities = 106/411 (25%), Positives = 165/411 (40%), Gaps = 95/411 (23%)
Query: 74 VAVITNGTAVLGMGNIG------PLASKPVMEGKAVLFKKFAGID-------VFDLEINE 120
V V+T+G +LG+G++G P GK L+ GI D+ N
Sbjct: 174 VIVVTDGERILGLGDLGVQGMGIP-------VGKLDLYTAAGGIRPSAVLPVCIDVGTNN 226
Query: 121 T----DP---------------DKLCD-IIFSLEPTFGG---INLEDIKAPECFYIEKKL 157
DP D+L D + +++ +G + ED F + ++
Sbjct: 227 EKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRY 286
Query: 158 RNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLII--- 214
R F+DD GTA + + +L L+ + D +++ +GAG A +LI
Sbjct: 287 RTT--HLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAM 344
Query: 215 --DLGFPL----QNIFVTDLAGVLYKGRSELMDSNKARFIKDTT-ARTLSDII----PNA 263
G + I++ D G++ K R + + K F D +L + + P
Sbjct: 345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKP-- 402
Query: 264 DIFLGLS-VSGVLKKEMVLQMAK---NPIILALANP--LPEILPED-IKSVRNDAIIAT- 315
+ +GLS V G KE++ MA PII AL+NP E E+ AI A+
Sbjct: 403 TVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASG 462
Query: 316 ---------GRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQS 366
G++ +P Q NN FP I GAL SGA +T +M +AA A+A E+
Sbjct: 463 SPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEE- 521
Query: 367 DIVNTTYGITNMTFGSECIIPKPFD--PRLMIKIAPAVAIAAEKSGVATKP 415
I P PF + +A AVA A + G+AT+
Sbjct: 522 -------------LAKGAIYP-PFSRIRDISAHVAAAVAAKAYEEGLATRL 558
>gnl|CDD|162980 TIGR02706, P_butyryltrans, phosphate butyryltransferase. Members
of this family are phosphate butyryltransferase, also
called phosphotransbutyrylase. In general, this enzyme
is found in butyrate-producing anaerobic bacteria,
encoded next to the gene for butyrate kinase. Together,
these two enzymes represent what may be the less common
of two pathways for butyrate production from
butyryl-CoA. The alternative is transfer of the CoA
group to acetate by butyryl-CoA:acetate CoA transferase.
Cutoffs for this model are set such that the homolog
from Thermotoga maritima, whose activity on butyryl-CoA
is only 30 % of its activity with acetyl-CoA, scores in
the zone between trusted and noice cutoffs [Energy
metabolism, Fermentation].
Length = 294
Score = 65.5 bits (160), Expect = 1e-11
Identities = 66/310 (21%), Positives = 132/310 (42%), Gaps = 42/310 (13%)
Query: 443 IAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPG 502
I K +K + + ++E +L A++ + +A IL+G E+ I ++ +I
Sbjct: 5 IEKVKECPMKTVAVAVAQDEPVLEAVKEAKEHGIARAILVGD----EEKINEIAKKIGMN 60
Query: 503 IH-FEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGM 561
+ EI++ K+ L+ + G AD +
Sbjct: 61 LDDVEIVNAPSPKK-----------------------------AALLAVRLVSTGKADML 91
Query: 562 ICGILGSTKLHLNYIDQIIG-KKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELSE 620
+ G++ + + +++ +G + K + A+ + DR L L D N P ++ +
Sbjct: 92 MKGLVDTATFLRSVLNKEVGLRTGKVLSHVAVFEVPGFDRLLFLTDAAFNTYPELKDKVQ 151
Query: 621 ITILAAKKMFSLGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQK--QMPELEIDGEM 677
I A K ++G+ P+VA L+ N + A AL + Q+ +DG +
Sbjct: 152 IINNAVKVAHAIGIDVPKVAPLAAVEV-VNPKMPATVDAAALAKMSDRGQIKGCIVDGPL 210
Query: 678 NGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCS 737
+ A++ E + ++ G A++L++P+IE+ N+ Y L + + G IL+G
Sbjct: 211 ALDNAISEEAAKHKGIEGEVAGKADILLVPDIEAGNVLYKTLTYFAKS--KNGGILVGTK 268
Query: 738 KPIHILTSSA 747
P+ +LTS A
Sbjct: 269 APV-VLTSRA 277
>gnl|CDD|236086 PRK07742, PRK07742, phosphate butyryltransferase; Validated.
Length = 299
Score = 53.2 bits (128), Expect = 2e-07
Identities = 71/317 (22%), Positives = 134/317 (42%), Gaps = 55/317 (17%)
Query: 443 IAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPG 502
I + A + K + + E+E+++ A+ I+ LA L G + + ++ ++
Sbjct: 7 IDQAAGQPKKTVAVAVAEDEEVIEAVAKAIELQLARFRLYGNQEKIMGMLQ--EHGLQTS 64
Query: 503 IHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMI 562
H EII + A+L ++ A+ G AD ++
Sbjct: 65 EHIEIIHAQ--------------------SSAEAAELAVK---------AVRNGEADVLM 95
Query: 563 CGILGSTKLHLNYIDQIIG-KKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELSEI 621
G + + + +++ G +K + A+ + DR + + D +N P+ E+ + I
Sbjct: 96 KGNVPTANILKAVLNKEWGLRKGSVLSHVAVFEVPNYDRLIFVTDAAMNIAPDLEQKAAI 155
Query: 622 TILAAKKMFSLGL-KPRVALLS---NSNFGSNNNISAHKMRTALKLIQK--QMPELEIDG 675
A + ++G+ P+VA L+ N I A AL + + Q+ +DG
Sbjct: 156 IQNAVEVARAIGIDLPKVAPLAAVEVVNPAMQATIDA----AALTQMNRRGQIKNCVVDG 211
Query: 676 EMNGNYALNNEL-----LHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIG 730
+ AL+N + HK I S + G A++L++P IE+ N+ Y L + V G
Sbjct: 212 PL----ALDNAVSQIAAEHKGI-VSDVAGKADILLVPTIEAGNVLYKSLVYFADAKV--G 264
Query: 731 PILLGCSKPIHILTSSA 747
++ G PI +LTS A
Sbjct: 265 AMIAGAKAPI-VLTSRA 280
>gnl|CDD|180267 PRK05805, PRK05805, phosphate butyryltransferase; Validated.
Length = 301
Score = 52.4 bits (126), Expect = 3e-07
Identities = 76/331 (22%), Positives = 146/331 (44%), Gaps = 76/331 (22%)
Query: 438 NPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRL 497
+ I AK+ + K I + ++E +L A++ + +A IL+G + +++ K++ +
Sbjct: 6 DEILSKAKE--QPPKTISVAVAQDEPVLEAVKEAKELGIANAILVGDKEKIKEIAKEIDM 63
Query: 498 RIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGN 557
++ FEIID N++ A LK + + G
Sbjct: 64 DLE---DFEIIDEKDNRK---------------------AALKAVEL--------VSSGK 91
Query: 558 ADGMICGILGSTKLHLNYIDQIIG-KKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAE 616
AD ++ G++ + +++ IG + KT + A+ + DR L L D N P+ +
Sbjct: 92 ADMVMKGLVDTANFLRAVLNKEIGLRTGKTMSHVAVFEVPKYDRLLFLTDAAFNIAPDLK 151
Query: 617 ELSEITILAAKKMFSLGLK-PRVALLSNSNFGSNNNISAHKMRTALKLIQKQMP---ELE 672
E +I A ++G++ P+VA + A++++ +MP +
Sbjct: 152 EKIDIINNAVTVAHAIGIENPKVAPIC-----------------AVEVVNPKMPATLDAA 194
Query: 673 IDGEMN-----------GNYALNNEL-----LHKQIPNSKLTGDANLLVLPNIESANIAY 716
+ +M+ G AL+N L HK I + + G+A++L++PNIE+ N+ Y
Sbjct: 195 LLSKMSDRGQIKGCIVDGPLALDNALSEEAAKHKGI-DGPVAGNADILLVPNIEAGNVMY 253
Query: 717 NLLKITSGNGVAIGPILLGCSKPIHILTSSA 747
L + G +L+G S P+ +LTS A
Sbjct: 254 KTLTYFADC--KNGGLLVGTSAPV-VLTSRA 281
>gnl|CDD|131756 TIGR02709, branched_ptb, branched-chain phosphotransacylase. This
model distinguishes branched-chain phosphotransacylases
like that of Enterococcus faecalis from closely related
subfamilies of phosphate butyryltransferase (EC
2.3.1.19) (TIGR02706) and phosphate acetyltransferase
(EC 2.3.1.8) (TIGR00651). Members of this family and of
TIGR02706 show considerable crossreactivity, and the
occurrence of a member of either family near an apparent
leucine dehydrogenase will suggest activity on branched
chain-acyl-CoA compounds [Energy metabolism, Amino acids
and amines].
Length = 271
Score = 43.2 bits (101), Expect = 3e-04
Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 23/261 (8%)
Query: 490 QHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIG 549
Q +KK + + F + D + N ++ WK Y+ ++ + ++ L
Sbjct: 15 QLVKKALKEAEQPLQFIVFDTNENLDTENLWK-YVHCSDEAAVAQEAVSL---------- 63
Query: 550 AMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNI-YAAMSNLILMDRQLMLVDTH 608
+ G A ++ GI+ + L + KNK + + AM L + +L D
Sbjct: 64 ---VATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELP-AGKTFLLTDCA 119
Query: 609 INENPNAEELSEITILAAKKMFSLGLK-PRVALLSNS-NFGSNNNISAHKMRTALKLIQK 666
+N P L EI A + LGL P++ALLS + NF S +
Sbjct: 120 MNIAPTQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFNDQ 179
Query: 667 QMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNG 726
Q E + G ++ + A + E + + + + GDA++LV+P I+ N Y L T
Sbjct: 180 Q--EATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSL--TLFGH 235
Query: 727 VAIGPILLGCSKPIHILTSSA 747
+G ++G P+ +LTS +
Sbjct: 236 AKVGGTIVGTKVPV-VLTSRS 255
>gnl|CDD|183361 PRK11890, PRK11890, phosphate acetyltransferase; Provisional.
Length = 312
Score = 40.4 bits (95), Expect = 0.002
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 32/174 (18%)
Query: 592 MSNLILMD-----RQLMLVDTHINENPNAEELSEITILAAKKMFSLGL-KPRVALLS--- 642
+S++ +MD + L++ D +N P E+ ++I A +LG +PRVA+LS
Sbjct: 127 ISHVFVMDVPGYPKPLIITDAAVNIAPTLEDKADIVQNAIDLAHALGFDEPRVAILSAVE 186
Query: 643 --NSNFGSNNNISA-HKMRTALKLIQKQMPELEIDGEMNGNYALNNELLH-----KQIPN 694
N S + +A KM + Q+ +DG + A +N + K I
Sbjct: 187 TVNPKIPSTLDAAALCKMAD-----RGQITGAILDGPL----AFDNAISPEAARIKGI-V 236
Query: 695 SKLTGDANLLVLPNIESANI-AYNLLKITSGNGVAIGPILLGCSKPIHILTSSA 747
S + GDA++LV+P++E+ N+ A L + A G I+LG PI ILTS A
Sbjct: 237 SPVAGDADILVVPDLEAGNMLAKQLTFL--AGADAAG-IVLGARVPI-ILTSRA 286
>gnl|CDD|221794 pfam12825, DUF3818, Domain of unknown function in PX-proteins
(DUF3818). This domain is found on proteins carrying a
PX domain. Its function is unknown.
Length = 340
Score = 35.0 bits (81), Expect = 0.12
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 21/123 (17%)
Query: 416 IKDIEIYTNHLQKFVYRSSAFMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQV--VID 473
I D + L+ FV + I + A K +++ I L Q+ VI+
Sbjct: 123 IDDYPVICQKLKNFVEADEDIKDAIREEAVKEDEDLLLAILRSSRLAPKLSKEQLQEVIE 182
Query: 474 ENLAFPILIG--RTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKG 531
A+ + E +L + K + YL ++
Sbjct: 183 SYTAWKNAVESEPVDEEESEEAELYSNL-----------------KQLLQLYLRERDKDL 225
Query: 532 MIE 534
M +
Sbjct: 226 MKK 228
>gnl|CDD|165252 PHA02942, PHA02942, putative transposase; Provisional.
Length = 383
Score = 34.6 bits (79), Expect = 0.19
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 445 KKARKNIK------RIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLR 498
K+AR IK ++ + E EEEKI V +D N+ I++G+ + H ++ R
Sbjct: 150 KEARLTIKDGKAFLKVTF-EKEEEKIKPKDSVAVDINMN-DIVVGKD---DSHYVRIPTR 204
Query: 499 IKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNA 558
+ HF+ + + K+Y WK + +R A+L M +G +
Sbjct: 205 LHDAHHFKSLAENLQKKYPRRWKENKRILHRARSFHHKAKLIMEDFARKVGKWVVE---- 260
Query: 559 DGMICGILGSTKLHLNYIDQIIGKKNK 585
I LG+ + L + +I NK
Sbjct: 261 ---IAEDLGANVIKLEDLKNLIKDVNK 284
>gnl|CDD|236180 PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate
acetyltransferase; Validated.
Length = 466
Score = 34.5 bits (80), Expect = 0.23
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 690 KQIPNSKLTGDANLLVLPNIESAN-IAYNLLKITSGNGVAIGPILLGCSKPIHILTSSA 747
K I S + G A++LV+P++E+ N +A L + A G I+LG PI ILTS A
Sbjct: 387 KGI-VSPVAGQADILVVPDLEAGNMLAKQLTYL--AGADAAG-IVLGARVPI-ILTSRA 440
>gnl|CDD|197274 cd09177, PLDc_RE_NgoFVII, Putative catalytic domain of type II
restriction enzyme NgoFVII and similar proteins.
Putative catalytic domain of type II restriction enzyme
NgoFVII (EC 3.1.21.4), which shows high sequence
similarity to type IIs restriction endonuclease BfiI.
Type II restriction endonucleases are components of
restriction modification (RM) systems that protect
bacteria and archaea against invading foreign DNA. They
usually function as homodimers or homotetramers that
cleave DNA at defined sites of 4 to 8 bp in length, and
they require Mg2+, not ATP or GTP, for catalysis. The
prototype of this subfamily is the NgoFVII restriction
endonuclease from Neisseria gonorrhoeae. It plays an
essential role in the endonucleolytic cleavage of DNA to
give specific double-stranded fragments with terminal
5'-phosphates. It recognizes the double-stranded
sequence GCSGC and cleaves after G-4. Members of this
subfamily contain one copy of the conserved HKD motif
(H-x-K-x(4)-D, where x represents any amino acid
residue) per protein chain and have been classified into
the phospholipase D (PLD, EC 3.1.4.4) superfamily.
Length = 143
Score = 31.6 bits (72), Expect = 0.62
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 152 YIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKL 187
YI + H K+ +F D + I+GSA L + L
Sbjct: 78 YIVPFFKYHGKLYLFKKDGKPFSAIIGSANLGAIWL 113
>gnl|CDD|188475 TIGR03960, rSAM_fuse_unch, radical SAM family uncharacterized
protein. This model describes a radical SAM protein, or
protein region, regularly found paired with or fused to
a region described by TIGR03936. PSI-BLAST analysis of
TIGR03936 suggests a relationship to the tRNA
pseudouridine synthase TruA, suggesting that this system
may act in RNA modification [Unknown function, Enzymes
of unknown specificity].
Length = 605
Score = 31.1 bits (71), Expect = 2.9
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 12/47 (25%)
Query: 354 VHAIADLAQIEQSDIVNTTYGITN--------MTFGSECIIPKPFDP 392
+ IADLAQ +V+ Y + +T + +PKPF P
Sbjct: 414 IKGIADLAQ----KVVDLYYEVPKEPRKGKVQVTVSTSFFVPKPFTP 456
>gnl|CDD|215522 PLN02968, PLN02968, Probable N-acetyl-gamma-glutamyl-phosphate
reductase.
Length = 381
Score = 30.6 bits (69), Expect = 3.6
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 17/61 (27%)
Query: 159 NHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGF 218
N+ ++ VF D G AII+ S I N LVK GA A+ L+L+ +G
Sbjct: 326 NYCELNVFADRIPGRAIII-SVIDN---LVK-----------GASGQAVQNLNLM--MGL 368
Query: 219 P 219
P
Sbjct: 369 P 369
>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate
dehydrogenases. MDH is one of the key enzymes in the
citric acid cycle, facilitating both the conversion of
malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate.
Members of this subfamily are bacterial MDHs, and plant
MDHs localized to the choloroplasts. MDHs are part of
the NAD(P)-binding Rossmann fold superfamily, which
includes a wide variety of protein families including
the NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 322
Score = 30.2 bits (69), Expect = 3.6
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 401 AVAIAAEKSGVATKPIKDIEIYTNHLQKFVYRSSAFMNPIFQIAKKARKNIKRII 455
A + A+K+GV +K++ I+ NH S P F A K +I
Sbjct: 161 AKSQLAKKAGVPVTDVKNMVIWGNH--------SPTQYPDFTNATIGGKPAAEVI 207
>gnl|CDD|216688 pfam01764, Lipase_3, Lipase (class 3).
Length = 141
Score = 29.2 bits (66), Expect = 4.0
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 181 ILNGLKLVKKKMKDCKLVVSG----AGAAALACLDLIIDLGFPLQNIFV 225
IL LK + +K D K+VV+G A+LA DL + FP I V
Sbjct: 49 ILPELKRLIEKYPDYKIVVTGHSLGGALASLAAADLAENGLFPSSRIRV 97
>gnl|CDD|173778 cd01028, TOPRIM_TopoIA, TOPRIM_TopoIA: topoisomerase-primase
(TOPRIM) nucleotidyl transferase/hydrolase domain of the
type found in the type IA family of DNA topoisomerases
(TopoIA). This subgroup contains proteins similar to
the Type I DNA topoisomerases: E. coli topisomerases I
and III, eukaryotic topoisomerase III and, ATP-dependent
reverse gyrase found in archaea and thermophilic
bacteria. Type IA DNA topoisomerases remove (relax)
negative supercoils in the DNA. These enzymes cleave one
strand of the DNA duplex, covalently link to the 5'
phosphoryl end of the DNA break and allow the other
strand of the duplex to pass through the gap. Reverse
gyrase is also able to insert positive supercoils in the
presence of ATP and negative supercoils in the presence
of AMPPNP. The TOPRIM domain has two conserved motifs,
one of which centers at a conserved glutamate and the
other one at two conserved aspartates (DxD). For
topoisomerases the conserved glutamate is believed to
act as a general base in strand joining and, as a
general acid in strand cleavage. The DXD motif may
co-ordinate Mg2+, a cofactor required for full catalytic
function.
Length = 142
Score = 29.1 bits (66), Expect = 4.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 440 IFQIAKKARKNIKRIIYSEGEEEKILRAIQ 469
I ++ K K +KR +SE + I A +
Sbjct: 111 ILEVLKCDNKPVKRAWFSEITPKAIREAFK 140
>gnl|CDD|223081 COG0002, ArgC, Acetylglutamate semialdehyde dehydrogenase [Amino
acid transport and metabolism].
Length = 349
Score = 29.9 bits (68), Expect = 4.8
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 17/61 (27%)
Query: 159 NHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGF 218
N I D++ G ++V SAI N LVK GA A+ ++++ GF
Sbjct: 294 NFCDIGFAVDERTGRVVVV-SAIDN---LVK-----------GAAGQAVQNMNIM--FGF 336
Query: 219 P 219
Sbjct: 337 D 337
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 30.4 bits (68), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 450 NIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKI 487
NIK + + E E I V+I +L PIL G+ K+
Sbjct: 697 NIKHLFFQECNGELI-----VIIHFHLKSPILTGKRKV 729
>gnl|CDD|224925 COG2014, COG2014, Uncharacterized conserved protein [Function
unknown].
Length = 250
Score = 29.8 bits (67), Expect = 5.0
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 244 KARFIKDTTARTLSD-----IIPNADIFLGLSVSGVLKK--EMVLQMAKNPIILALANPL 296
R K TLSD I+P D+ + S S ++ +M+L AK ++ L P
Sbjct: 141 FERNPKLPKRGTLSDTLEYQILPEVDV-IIASASTLVNGTLDMILDRAKKAKLVVLTGPT 199
Query: 297 PEILPEDIKSVRNDAIIAT 315
++LPE K I T
Sbjct: 200 AQLLPEFFKGTGVTHIAGT 218
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 30.1 bits (68), Expect = 5.1
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 411 VATKPIKDIEIYTN-HLQKFVYRSSAFMNP-IFQIAKKARKNIKR 453
VA P + + IYT ++ + +S + P IF I+ A N++R
Sbjct: 38 VAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQR 82
>gnl|CDD|180968 PRK07413, PRK07413, hypothetical protein; Validated.
Length = 382
Score = 30.1 bits (68), Expect = 5.3
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 32/140 (22%)
Query: 301 PEDIKSVRNDAIIATGRSDY--PNQVNNVLCFPY--------IFRGALDSGATTITREME 350
P I VR TGR+++ +++ F I +GA+ SG ++ E
Sbjct: 83 PHLIDQVR------TGRAEFFGADEITK---FDRQEAQRGWDIAKGAIASGLYSVVVLDE 133
Query: 351 IAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIA-------PAVA 403
+ V DL + ++VNT + + G E II P+ ++ IA P
Sbjct: 134 LNPV---LDLGLLPVDEVVNT---LKSRPEGLEIIITGRAAPQSLLDIADLHSEMRPHRR 187
Query: 404 IAAEKSGVATKPIKDIEIYT 423
A + GV IEIYT
Sbjct: 188 PTASELGVPFNSSGGIEIYT 207
>gnl|CDD|237004 PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosphate reductase;
Provisional.
Length = 313
Score = 29.4 bits (67), Expect = 6.4
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 19/62 (30%)
Query: 159 NHMKIPVFHDDQHGTAIIVGSAILNGL-KLVKKKMKDCKLVVSGAGAAALACLDLIIDLG 217
N +++ VF ++ HG A++V A L+ L K GA AA+ L+L+ LG
Sbjct: 265 NRLELFVFGNEDHGQAVLV--ARLDNLGK--------------GASGAAVQNLNLM--LG 306
Query: 218 FP 219
Sbjct: 307 LD 308
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino
acid dehydrogenase-like proteins. Amino acid
dehydrogenase(DH)-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and are found
in glutamate, leucine, and phenylalanine DHs (DHs),
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 86
Score = 27.7 bits (62), Expect = 6.6
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLG 217
TA + + K+ K +K +VV GAG L+ D G
Sbjct: 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEG 46
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 30.0 bits (67), Expect = 7.0
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 330 FPYIFRGALDSG---ATTITREMEIAAVHAIADL-AQIEQSDIVNTTYGITNMTFGSECI 385
+P GA SG A I R ++ + E+ D ++ + ++TFGS I
Sbjct: 657 YPATMHGAFLSGMREAANILRVARRRSLCIDDKVNNDEEEDDCLDQLFDTPDLTFGSFSI 716
Query: 386 IPKPFDPR 393
+ FDPR
Sbjct: 717 L---FDPR 721
>gnl|CDD|226491 COG4002, COG4002, Predicted phosphotransacetylase [General function
prediction only].
Length = 256
Score = 29.0 bits (65), Expect = 7.4
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 556 GNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILM--DRQLMLVDTHINENP 613
G D + G L ++K+ L + + K ++++ +L I+E
Sbjct: 62 GEIDAAVRGSLSASKVILELKEALGMKFY------CRASILENPFTNGFLLAPVGIDEGK 115
Query: 614 NAEELSEITILAAKKMFSLGLKPRVALLSNSNFG 647
++ I LAA+ + G++P+VA+LS G
Sbjct: 116 TIKDKIRIIELAAEFLRRTGIEPKVAVLSGGRLG 149
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.267 0.0886 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,403,800
Number of extensions: 4028127
Number of successful extensions: 3864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3794
Number of HSP's successfully gapped: 64
Length of query: 766
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 662
Effective length of database: 6,324,786
Effective search space: 4187008332
Effective search space used: 4187008332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.8 bits)