RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14495
(766 letters)
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD,
structural genomics, NPPSFA; HET: NAD MES; 1.60A
{Pyrococcus horikoshii} PDB: 1ww8_A*
Length = 439
Score = 715 bits (1847), Expect = 0.0
Identities = 191/457 (41%), Positives = 272/457 (59%), Gaps = 34/457 (7%)
Query: 14 QSALEYHE--FPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKG 71
+ ALE+H+ FP GKI VIP L ++++L LAY+PGVA C+EI + V++YT+KG
Sbjct: 4 EKALEFHKNNFPGNGKIEVIPKVSLESREELTLAYTPGVAEPCKEIARDPGKVYEYTSKG 63
Query: 72 NLVAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIF 131
NLVAV+++G+ +LG+GNIGPLA PVMEGKA+LFK+F G+D F + I E +P+K DI+
Sbjct: 64 NLVAVVSDGSRILGLGNIGPLAGLPVMEGKALLFKRFGGVDAFPIMIKEQEPNKFIDIVK 123
Query: 132 SLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKK 191
++ PTFGGINLEDI +P+CFYI ++LR + IPVFHDDQ GTA +V + +LN LK+V KK
Sbjct: 124 AIAPTFGGINLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKK 183
Query: 192 MKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKG-----RSELMDSNKAR 246
+ + L + GAGAA A L ++ + G +N+ V +L + E + +
Sbjct: 184 ISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGW 243
Query: 247 FIKDTTAR----TLSDIIPNADIFLGLSVS--GVLKKEMVLQMAKNPIILALANPLPEIL 300
+K T + + +AD+ + + GV+K + + +M ++ I+ LANP+PEIL
Sbjct: 244 LLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPLANPVPEIL 303
Query: 301 PEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADL 360
PE+ K I+ATGRSDYPNQ+NN+L FP IFRGALD A TIT M IAA AIA +
Sbjct: 304 PEEAKKAG-ARIVATGRSDYPNQINNLLGFPGIFRGALDVRARTITDSMIIAAAKAIASI 362
Query: 361 AQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGVATKPIKDIE 420
+ E IIP P +P + + A AVA A K GVA +K
Sbjct: 363 VE----------------EPSEENIIPSPLNPIVYAREARAVAEEAMKEGVARTKVKGEW 406
Query: 421 IYTNHLQKFVYRSSAFMNPIFQIAKKARKNIKRIIYS 457
+ H + + + PI + K R+ K I +
Sbjct: 407 VE-EHTIRLIEFYENVIAPINK---KRREYSKAITRA 439
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba
histolytica}
Length = 487
Score = 713 bits (1843), Expect = 0.0
Identities = 154/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%)
Query: 10 KKSHQSALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTT 69
+ + A + H+F GKI ++P L+ + Y+PGV+ I N+++ Y+
Sbjct: 30 QFYKELAEKVHKFY-KGKIQIMPKCTLAGFNWFNAYYTPGVSRISTNIRDNNDSSLFYSL 88
Query: 70 KGNLVAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINE------TDP 123
+GN V V+++ T VLG G++ P VMEGKA+L K GID + I+ DP
Sbjct: 89 RGNFVGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDAVPICIDSKNKEGKNDP 148
Query: 124 DKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILN 183
D + + + ++ TFG INLEDI P C+ I LR IPV+HDDQ GTA + + +LN
Sbjct: 149 DAVIEFVQRIQHTFGAINLEDISQPNCYKILDVLRESCDIPVWHDDQQGTASVTLAGLLN 208
Query: 184 GLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSN 243
LKLVKK + +C++V GAG++ CL LI+ G + I + D G L+ GR ++
Sbjct: 209 ALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDT 268
Query: 244 K-------ARFIKDTTARTLSDIIPNADIFLGLSVS--GVLKKEMVLQMAKNPIILALAN 294
+ + ++++ AD+ + LS GV+K E + M + PI+ AN
Sbjct: 269 RFYRKWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCAN 328
Query: 295 PLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAV 354
P+PEI P + K I+ATGR D+PNQVNN + FP I +GAL A IT M IAA
Sbjct: 329 PVPEIYPYEAKEAG-AYIVATGRGDFPNQVNNSVGFPGILKGALIVRARKITDNMAIAAS 387
Query: 355 HAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGVATK 414
A+A+ A+ + II +P + K A VA+ A K GVA
Sbjct: 388 RALAEFAEKRG--------------INPDNIIGTMDEPGIFPKEAADVAMQAIKDGVARV 433
Query: 415 PIKDIEIYTNHLQKFVYRSSAFMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDE 474
+ + + + + + + + I+ Q ++E
Sbjct: 434 TDLTWQQVYDIAEHDIKEARESAQLLQ------------------DSKHIVDFPQETLNE 475
Query: 475 NLAFPILIGRTK 486
LA+ I K
Sbjct: 476 CLAYAINKVTGK 487
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 667 bits (1723), Expect = 0.0
Identities = 174/411 (42%), Positives = 239/411 (58%), Gaps = 22/411 (5%)
Query: 10 KKSHQSALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTT 69
+ Q ALE + GK+ V P + + DL++AY+PGVAS I + + TT
Sbjct: 5 NQLGQLALEQAK-TFGGKLEVQPKVDIKTKHDLSIAYTPGVASVSSAIAKDKTLAYDLTT 63
Query: 70 KGNLVAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDI 129
K N VAVI++GTAVLG+G+IGP A+ PVMEGKA LFK FAG+D + ++ D +++ I
Sbjct: 64 KKNTVAVISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAGVDAIPIVLDTKDTEEIISI 123
Query: 130 IFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVK 189
+ +L PTFGGINLEDI AP CF IE++L IPVFHDDQHGTAI+V +AI N LKL+K
Sbjct: 124 VKALAPTFGGINLEDISAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLK 183
Query: 190 KKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIK 249
K + + +VV+G G+A L+ ++ G + V D G++ + + + + K
Sbjct: 184 KSLDEVSIVVNGGGSAGLSITRKLLAAGA--TKVTVVDKFGIINEQEAAQLAPHHLDIAK 241
Query: 250 DT----TARTLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIK 305
T + TL D + ADIF+G+S GVLK E + +MA P+I A+ANP+PEI P++
Sbjct: 242 VTNREFKSGTLEDALEGADIFIGVSAPGVLKAEWISKMAARPVIFAMANPIPEIYPDEAL 301
Query: 306 SVRNDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQ 365
I+ TGRSD+PNQ+NNVL FP IFRGALD+ A TIT EM+IAA IA L +
Sbjct: 302 EAG-AYIVGTGRSDFPNQINNVLAFPGIFRGALDARAKTITVEMQIAAAKGIASLVPDDA 360
Query: 366 SDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGVATKPI 416
+ IIP F + +A +V KS
Sbjct: 361 --------------LSTTNIIPDAFKEGVAEIVAKSVRSVVLKSEGHHHHH 397
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 649 bits (1676), Expect = 0.0
Identities = 163/398 (40%), Positives = 238/398 (59%), Gaps = 27/398 (6%)
Query: 14 QSALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNL 73
ALE H F GKI + +++ L+L Y+PGVA + + YT++ N
Sbjct: 13 VDALEVHRFL-KGKIRTALPVEKVDRETLSLLYTPGVADVARACAEDPEKTYVYTSRWNT 71
Query: 74 VAVITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFSL 133
VAV+++G+AVLG+GNIGP + PVMEGKA LFK FA ID F + ++E++ +K+ I+ SL
Sbjct: 72 VAVVSDGSAVLGLGNIGPYGALPVMEGKAFLFKAFADIDAFPICLSESEEEKIISIVKSL 131
Query: 134 EPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAILNGLKLVKKKMK 193
EP+FGGINLEDI AP+CF I ++L M IPVFHDDQ GTA++V +A LN LKL +KK++
Sbjct: 132 EPSFGGINLEDIGAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIE 191
Query: 194 DCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSE-LMDSNKARFIKDTT 252
+ K+VV+G GAA + ++DLG +N+ D G+L + E ++ + T
Sbjct: 192 EVKVVVNGIGAAGYNIVKFLLDLGV--KNVVAVDRKGILNENDPETCLNEYHLEIARITN 249
Query: 253 AR----TLSDIIPNADIFLGLSVSGVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVR 308
L + AD F+G+S +LK E + +M++ P+I ALANP+PEI PE +
Sbjct: 250 PERLSGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVPEIDPELAREAG 309
Query: 309 NDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDI 368
I+ATGRSD+PNQVNN+L FP I +GA++ + IT+ M ++AV AIA +
Sbjct: 310 -AFIVATGRSDHPNQVNNLLAFPGIMKGAVEKRS-KITKNMLLSAVEAIARSCE------ 361
Query: 369 VNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAA 406
E IIP+ FD ++ + + AV +A
Sbjct: 362 -----------PEPERIIPEAFDMKVHLNVYTAVKGSA 388
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure
funded by NIH, protein structure initiative, PSI; 2.75A
{Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Length = 329
Score = 288 bits (739), Expect = 2e-91
Identities = 96/333 (28%), Positives = 168/333 (50%), Gaps = 7/333 (2%)
Query: 433 SSAFMNPIF-QIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQH 491
M +F + +K +I++ EG +E+IL A+ + + PI+IG ++
Sbjct: 3 GGGGMADLFSTVQEKVAGKDVKIVFPEGLDERILEAVSKLAGNKVLNPIVIGNENEIQAK 62
Query: 492 IKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAM 551
K+L L + G+ +I DP + +D + ++ K EQ A+ + N G M
Sbjct: 63 AKELNLTL-GGV--KIYDPHTYEGMEDLVQAFVERRKGKATEEQ-ARKALLDENYF-GTM 117
Query: 552 AIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINE 611
++KG ADG++ G ST + QII K + + + + Q + D IN
Sbjct: 118 LVYKGLADGLVSGAAHSTADTVRPALQIIKTKEGVKKTSGVFIMARGEEQYVFADCAINI 177
Query: 612 NPNAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPEL 671
P++++L+EI I +A ++PRVA+LS S GS + K+ A+K+ +++ PEL
Sbjct: 178 APDSQDLAEIAIESANTAKMFDIEPRVAMLSFSTKGSAKSDETEKVADAVKIAKEKAPEL 237
Query: 672 EIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGP 731
+DGE + A + K+ P+S++ GDAN+ V P++E+ NI Y + + GN A+GP
Sbjct: 238 TLDGEFQFDAAFVPSVAEKKAPDSEIKGDANVFVFPSLEAGNIGYKIAQ-RLGNFEAVGP 296
Query: 732 ILLGCSKPIHILTSSATVRRIVNMTALCVIDAL 764
IL G + P++ L+ + N+ + AL
Sbjct: 297 ILQGLNMPVNDLSRGCNAEDVYNLALITAAQAL 329
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like
nucleotide-binding fold, structural genomics, BSGC
structure funded by NIH; 2.70A {Streptococcus pyogenes}
SCOP: c.77.1.5
Length = 337
Score = 281 bits (721), Expect = 2e-88
Identities = 88/332 (26%), Positives = 157/332 (47%), Gaps = 8/332 (2%)
Query: 437 MNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLR 496
+ + +K +I++ EG +E+++RA + E L PI++G+++ + + KL
Sbjct: 10 RSLFGGLREKILGKNMKIVFPEGNDERVVRAAARLKFEGLLEPIILGQSEEVRNLLTKLG 69
Query: 497 LRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKG 556
II+P+ + + ++ + K +E A +R N G M + G
Sbjct: 70 FAD-QDY--TIINPNEYADFDKMKEAFVEVRKGKATLED-ADKMLRDVNYF-GVMLVKMG 124
Query: 557 NADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLV--DTHINENPN 614
ADGM+ G + ST + QII K + + + + + V D IN +P
Sbjct: 125 LADGMVSGAIHSTADTVRPALQIIKTKPGISRTSGVFLMNRENTSERYVFADCAINIDPT 184
Query: 615 AEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEID 674
A+EL+EI + A+ + P++A+LS S GS K+R A ++ P+L +D
Sbjct: 185 AQELAEIAVNTAETAKIFDIDPKIAMLSFSTKGSGKAPQVDKVREATEIATGLNPDLALD 244
Query: 675 GEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILL 734
GE+ + A E + P+S + G AN V P+++S NI Y + + G AIGPIL
Sbjct: 245 GELQFDAAFVPETAAIKAPDSAVAGQANTFVFPDLQSGNIGYKIAQ-RLGMFDAIGPILQ 303
Query: 735 GCSKPIHILTSSATVRRIVNMTALCVIDALSK 766
G +KP++ L+ ++ I + + A+
Sbjct: 304 GLNKPVNDLSRGSSAEDIYKLAIITAAQAIES 335
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura
genomics, JCSG, protein structure initiative, PSI, joint
CE structural genomics; 2.32A {Escherichia coli} SCOP:
c.77.1.5
Length = 355
Score = 276 bits (709), Expect = 1e-86
Identities = 83/338 (24%), Positives = 163/338 (48%), Gaps = 13/338 (3%)
Query: 434 SAFMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIK 493
A I + + A + R+++ + ++++L+A Q + + LA PIL+ L Q
Sbjct: 9 PALRAIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPILVANPFELRQFAL 68
Query: 494 KLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAI 553
+ + G+ ++IDP N ++ + + A K+ A +
Sbjct: 69 SHGVAM-DGL--QVIDPHGNLAMREEFAHRW-LARAGEKTPPDALEKLTDPLMF-AAAMV 123
Query: 554 HKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILM---DRQLMLVDTHIN 610
G AD I G L ST L +IIG + +++ L+L L D +
Sbjct: 124 SAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSSI-FLMLPQYSGPALGFADCSVV 182
Query: 611 ENPNAEELSEITILAAK--KMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQM 668
P A +L++I + +A+ + G +PRVA+LS S+ GS + ++ A ++++++
Sbjct: 183 PQPTAAQLADIALASAETWRAI-TGEEPRVAMLSFSSNGSARHPCVANVQQATEIVRERA 241
Query: 669 PELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVA 728
P+L +DGE+ + A E+ ++ P S L G AN++V P++E+ NI Y + + G A
Sbjct: 242 PKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQ-RLGGYRA 300
Query: 729 IGPILLGCSKPIHILTSSATVRRIVNMTALCVIDALSK 766
+GP++ G + P+H L+ +V+ I+ + + + ++
Sbjct: 301 VGPLIQGLAAPMHDLSRGCSVQEIIELALVAAVPRQTE 338
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound
PER monomer, acyltransferase; HET: COA; 2.15A
{Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A*
2af3_C*
Length = 333
Score = 275 bits (705), Expect = 3e-86
Identities = 80/338 (23%), Positives = 154/338 (45%), Gaps = 16/338 (4%)
Query: 437 MNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLR 496
+ + +I+++A+K K I E E+ + L+A +++ +A +L+G ++ L
Sbjct: 2 VTFLEKISERAKKLNKTIALPETEDIRTLQAAAKILERGIADIVLVGNEADIKALAGDLD 61
Query: 497 LRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKG 556
L +I+DP ++ +Y + + KG+ + A M M G
Sbjct: 62 LS-----KAKIVDPKTYEKKDEYINAFYELRKHKGITLENAAEIMSDYVYF-AVMMAKLG 115
Query: 557 NADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAM------SNLILMDRQLMLVDTHIN 610
DG++ G S+ L QI+ + +A D + D+ +
Sbjct: 116 EVDGVVSGAAHSSSDTLRPAVQIVKTAKGAALASAFFIISVPDCEYGSDGTFLFADSGMV 175
Query: 611 ENPNAEELSEITILAAK--KMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQM 668
E P+ E+++ I +++AK ++ + P+VA+LS S GS + + KL Q+
Sbjct: 176 EMPSVEDVANIAVISAKTFELL-VQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELA 234
Query: 669 PELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVA 728
P++ IDGE+ + A+ ++ + P S + G AN+ + P++ NIAY + + A
Sbjct: 235 PDIAIDGELQVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQ-RLAKAEA 293
Query: 729 IGPILLGCSKPIHILTSSATVRRIVNMTALCVIDALSK 766
GPI G +KPI+ L+ + IV A+ + A ++
Sbjct: 294 YGPITQGLAKPINDLSRGCSDEDIVGAVAITCVQAAAQ 331
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for
structural genomics of infectious diseases, csgid; HET:
TRS; 1.44A {Staphylococcus aureus subsp}
Length = 331
Score = 272 bits (698), Expect = 3e-85
Identities = 97/336 (28%), Positives = 171/336 (50%), Gaps = 10/336 (2%)
Query: 433 SSAFMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHI 492
S+A + + + K +I+ EGE+E++L A + + PI++G ++
Sbjct: 1 SNAMADLLNVLKDKLSGKNVKIVLPEGEDERVLTAATQLQATDYVTPIVLGDETKVQSLA 60
Query: 493 KKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMA 552
+KL L I I E+I+P ++ + ++++ K EQ AQ + N G M
Sbjct: 61 QKLNLDI-SNI--ELINPATSELKAELVQSFVERRKGKTTEEQ-AQELLNNVNYF-GTML 115
Query: 553 IHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINEN 612
++ G ADG++ G ST + QII K + + + +I D Q + D IN
Sbjct: 116 VYAGKADGLVSGAAHSTGDTVRPALQIIKTKPGVSRTSGIFFMIKGDEQYIFGDCAINPE 175
Query: 613 PNAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPE-- 670
+++ L+EI + +AK S G+ P+VA+LS S GS + K++ A+KL Q++ E
Sbjct: 176 LDSQGLAEIAVESAKSALSFGMDPKVAMLSFSTKGSAKSDDVTKVQEAVKLAQQKAEEEK 235
Query: 671 --LEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVA 728
IDGE + A+ + K+ P +KL GDAN+ V P++E+ NI Y + + G A
Sbjct: 236 LEAIIDGEFQFDAAIVPGVAEKKAPGAKLQGDANVFVFPSLEAGNIGYKIAQ-RLGGYDA 294
Query: 729 IGPILLGCSKPIHILTSSATVRRIVNMTALCVIDAL 764
+GP+L G + P++ L+ ++ + N++ + AL
Sbjct: 295 VGPVLQGLNSPVNDLSRGCSIEDVYNLSFITAAQAL 330
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 272 bits (698), Expect = 1e-82
Identities = 99/460 (21%), Positives = 176/460 (38%), Gaps = 95/460 (20%)
Query: 39 QDDLALAYSPGVASACEE---IVSNSNNVF-KYTTKGNL-------------VAVITNGT 81
+ + + Y+P V AC+ +F +G++ V+T+G
Sbjct: 83 ERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGE 142
Query: 82 AVLGMGNIGPLASKPVMEGKAVLFKKFAGID-------VFDL----EINETDP------- 123
+LG+G++G + GK L+ G+ + D+ E DP
Sbjct: 143 RILGLGDLGCYGM-GIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRH 201
Query: 124 ------------DKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQH 171
D+ + + S I ED F + K RN K F+DD
Sbjct: 202 KRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRN--KYCTFNDDIQ 259
Query: 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDL----GFPL----QNI 223
GTA + + +L L++ K ++ D ++ GAG AAL +LI+ G + I
Sbjct: 260 GTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRI 319
Query: 224 FVTDLAGVLYKGRSELMDSNKARFIKDTT-ARTLSDIIPN--ADIFLGLS-VSGVLKKEM 279
++ D G++ KGR+ L K F + + L DI+ + + +G++ + G +++
Sbjct: 320 WMVDSKGLIVKGRASLTPE-KEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQI 378
Query: 280 VLQMAKN---PIILALANP--LPEILPED-IKSVRNDAIIAT-----------GRSDYPN 322
+ MA PII AL+NP E E K I A+ G++ YP
Sbjct: 379 LQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPG 438
Query: 323 QVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGS 382
Q NN FP + G + G I ++ + IA ++
Sbjct: 439 QGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQE--------------VSEENLQE 484
Query: 383 ECIIPKPFDPRLM-IKIAPAVAIAAEKSGVATKPIKDIEI 421
+ P + + +KIA +A A ++ A+ + ++
Sbjct: 485 GRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDL 524
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase,
oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP:
c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A*
1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 267 bits (685), Expect = 2e-80
Identities = 95/461 (20%), Positives = 166/461 (36%), Gaps = 96/461 (20%)
Query: 40 DDLALAYSPGVASACEE---IVSNSNNVF-KYTTKGNL-------------VAVITNGTA 82
+ + Y+P V AC + I +F + +G++ V+T+G
Sbjct: 86 SLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGER 145
Query: 83 VLGMGNIGPLASKPVMEGKAVLFKKFAGID-------VFDLEINET----DP-------- 123
+LG+G++G + GK L+ AGI D+ + DP
Sbjct: 146 ILGLGDLGVYGM-GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQK 204
Query: 124 -----------DKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHG 172
D+ I I ED F +K R K F+DD G
Sbjct: 205 RDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYRE--KYCTFNDDIQG 262
Query: 173 TAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDL----GFPL----QNIF 224
TA + + +L K++ K + + K++ GAG AAL +LI+ G + I+
Sbjct: 263 TAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW 322
Query: 225 VTDLAGVLYKGRSELMDSNKARFIKD---TTARTLSDIIPN--ADIFLGLS-VSGVLKKE 278
+ D G+L KGR +DS + F + T D + +G++ + +
Sbjct: 323 MFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPD 382
Query: 279 MVLQMAKN---PIILALANP--LPEILPEDIKS-VRNDAIIAT-----------GRSDYP 321
++ MA P+I AL+NP E E+ + + A+ GR P
Sbjct: 383 VIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTP 442
Query: 322 NQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFG 381
Q NNV FP + + I+ + + A A+ +T+
Sbjct: 443 GQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQ--------------LTDEELA 488
Query: 382 SECIIPKPFDPRLM-IKIAPAVAIAAEKSGVATKPIKDIEI 421
+ P + + + I IA V + +A + + +
Sbjct: 489 QGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRYPEPEDK 529
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative
decarboxylase, rossmann fold, MAla dehydrogenase; HET:
NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB:
1llq_A*
Length = 605
Score = 267 bits (684), Expect = 5e-80
Identities = 103/492 (20%), Positives = 189/492 (38%), Gaps = 101/492 (20%)
Query: 39 QDDLALAYSPGVASACEE---IVSNSNNVF----------------KYTTKGNLVAVITN 79
++ + + Y+P V AC+ I ++ + + V+T+
Sbjct: 119 KELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTD 178
Query: 80 GTAVLGMGNIGPLASKPVMEGKAVLFKKFAGID-------VFDLEINET----DP----- 123
G +LG+G++G + GK L+ G+ + D+ N DP
Sbjct: 179 GERILGLGDLGAYGI-GIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGL 237
Query: 124 ----------DKLCD-IIFSLEPTFGG---INLEDIKAPECFYIEKKLRNHMKIPVFHDD 169
D L D + + +G I ED P F + K ++ K +F+DD
Sbjct: 238 RHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQD--KYTMFNDD 295
Query: 170 QHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDL----GFP----LQ 221
GTA ++ + +L ++ KK + K + GAGAA+ ++I+ G
Sbjct: 296 IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACN 355
Query: 222 NIFVTDLAGVLYKGRSELMDSNKARFIKDTT-ARTLSDIIPNA--DIFLGLS-VSGVLKK 277
I++ D+ G++ K R E+ +F KD ++ ++I A +G S V G +
Sbjct: 356 RIYLMDIDGLVTKNRKEMNPR-HVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNE 414
Query: 278 EMVLQMAKN---PIILALANP--LPEILPEDIKS-VRNDAIIATG----------RSDYP 321
E++ MA+ PII AL+NP E E+ + A+ A+G + P
Sbjct: 415 EVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKP 474
Query: 322 NQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFG 381
Q NN FP + G + + ++ + A +A +T +
Sbjct: 475 GQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASC--------------VTEDSLK 520
Query: 382 SECIIPKPFDPRLM-IKIAPAVAIAAEKSGVATKPIK--DIEIYTNHLQ-KFVYRSSAFM 437
+ P+ + R + I+IA +A K+G A + D+E Y Y +
Sbjct: 521 VGRVYPQLKEIREISIQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEE--LI 578
Query: 438 NPIFQIAKKARK 449
N + ++ +
Sbjct: 579 NATYDWPEQDMR 590
>3uf6_A LMO1369 protein; structural genomics, the center for structural
genomics of I diseases, csgid, unknown function,
transferase; HET: COD; 1.80A {Listeria monocytogenes}
PDB: 3tng_A* 3u9e_A*
Length = 291
Score = 131 bits (333), Expect = 2e-34
Identities = 58/337 (17%), Positives = 120/337 (35%), Gaps = 55/337 (16%)
Query: 434 SAFMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIK 493
S M + A + + ++E +L I++ + + L +L G+ +
Sbjct: 1 SNAMTKSRFFSDVAETSSFVFAVAGADDEVVLETIRLALKQKLGKFLLFGKKEDKTLTAN 60
Query: 494 KLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAI 553
+ I D E AQ +A+
Sbjct: 61 E---------SVTWIQTD--------------------TAEAAAQG---------AILAV 82
Query: 554 HKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILM-----DRQLMLVDTH 608
AD ++ G + + L + + + G + +S + + + L++ D
Sbjct: 83 KNKEADILVKGFIPTATLMHHVLKKENGLRTDQ----LLSQIAIFDIPTYHKPLLITDCA 138
Query: 609 INENPNAEELSEITILAAKKMFSLGL-KPRVALLSNSNFGSNNNISAHKMRTALKLIQKQ 667
+N P +E IT A +G+ P++ALLS A +++Q
Sbjct: 139 MNVAPKTKEKIAITENALAVAHQIGITNPKIALLS---AVEEVTAKMPSTLEAQEVVQHF 195
Query: 668 MPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGV 727
++ + G + + A++ E + G+A++L+ PNIE+ N Y L + G
Sbjct: 196 GNQISVSGPLALDVAISKEAALHKGITDSSAGEADILIAPNIETGNALYKSLVYFA--GA 253
Query: 728 AIGPILLGCSKPIHILTS-SATVRRIVNMTALCVIDA 763
+G ++G PI +++S + + + L V
Sbjct: 254 KVGSAVVGAKVPI-VISSRNDSPENKLASFILTVRLV 289
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein
structure initiative, PSI, nysgxrc; 2.40A {Enterococcus
faecalis}
Length = 279
Score = 109 bits (275), Expect = 8e-27
Identities = 51/318 (16%), Positives = 108/318 (33%), Gaps = 50/318 (15%)
Query: 451 IKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDP 510
+ + + G + +IL+ ++ + E I + ++ +
Sbjct: 1 MITVSIAGGSQPEILQLVKKALKEAEQPLQFIV---------FDTNENLDTENLWKYVHC 51
Query: 511 DFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTK 570
+ G A ++ GI+ +
Sbjct: 52 SDEAA-----------------------------VAQEAVSLVATGQAQILLKGIIQTHT 82
Query: 571 LHLNYI---DQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELSEITILAAK 627
L L + + + K + A + + + +L D +N P L EI A +
Sbjct: 83 L-LKEMLKSEHQLKNKPILSHVAMV--ELPAGKTFLLTDCAMNIAPTQATLIEIVENAKE 139
Query: 628 KMFSLGL-KPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNE 686
LGL P++ALLS + + S+ + + E + G ++ + A + E
Sbjct: 140 VAQKLGLHHPKIALLSAAENFNPKMPSSVLAK-EVTAHFNDQQEATVFGPLSLDLATSEE 198
Query: 687 LLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTS- 745
+ + + + GDA++LV+P I+ N Y L + +G ++G P+ +LTS
Sbjct: 199 AVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFG--HAKVGGTIVGTKVPV-VLTSR 255
Query: 746 SATVRRIVNMTALCVIDA 763
S + + +
Sbjct: 256 SDSTESKFHSLRFAMRQV 273
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 100 bits (250), Expect = 6e-22
Identities = 91/614 (14%), Positives = 188/614 (30%), Gaps = 176/614 (28%)
Query: 115 DLEINETDPDKLC--DIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMK------IPVF 166
D E E DI+ E F + +C ++ ++ + I +
Sbjct: 8 DFETGEHQ---YQYKDILSVFEDAF-------VDNFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 167 HDDQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFV- 225
D GT + + + ++V+K +++ L I+ F + I
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEV----------------LRINYKFLMSPIKTE 101
Query: 226 ---TDLAGVLYKGRSELMDSNKARFIKDTTAR---------TLSDIIPNADIFL-GLSVS 272
+ +Y + + + ++ F K +R L ++ P ++ + G+ S
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 273 G-------VLKKEMVLQMAKNPI-------------ILALANPL---------------- 296
G V V I +L + L
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 297 -PEILPEDIKSVRNDAIIATGRSDYPNQ---VNNVLCFPYIFRGALDSGATTI--TREME 350
++ I++ + Y N + NV + A + + TR +
Sbjct: 222 NIKLRIHSIQAELRRLLK---SKPYENCLLVLLNV-QNAKAWN-AFNLSCKILLTTRFKQ 276
Query: 351 IAAVHAIADLAQIEQSDIVNTTYGIT---NMTFGSECIIPKPFD-PRLMIKIAP-AVAIA 405
+ A + + + +T + + + +P D PR ++ P ++I
Sbjct: 277 VTDF---LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 406 AE--KSGVAT----------KPIKDIEIYTNHLQKFVYRSSAFMNPIFQIAKKARKNIK- 452
AE + G+AT K IE N L+ YR +F +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF------PPSAHI 387
Query: 453 -----RIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEI 507
+I+ + + + VV+++ L + ++E+ K+ + I P I+ E+
Sbjct: 388 PTILLSLIWFDVIKSDV----MVVVNK------LHKYS-LVEKQPKESTISI-PSIYLEL 435
Query: 508 IDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILG 567
N+ +R +++ Y K + LI D +G
Sbjct: 436 KVKLENEYAL----------HRS-IVDHYNIPKTFDSDDLI------PPYLDQYFYSHIG 478
Query: 568 --------------STKLHLNY--IDQ-IIGKKNKTNIYAAMSNLILMDRQLMLVDTHIN 610
+ L++ ++Q I N ++ N + QL +I
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ---QLKFYKPYIC 535
Query: 611 ENPNAEELSEITIL 624
+N E IL
Sbjct: 536 DNDPKYERLVNAIL 549
Score = 46.4 bits (109), Expect = 4e-05
Identities = 76/587 (12%), Positives = 168/587 (28%), Gaps = 202/587 (34%)
Query: 226 TDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLGLSVSGVLKKEMVLQMAK 285
+ Y+ + +++ + F+ + + + D +L KE + +
Sbjct: 9 FETGEHQYQYK-DILSVFEDAFVDNFDCKDVQD-----------MPKSILSKEEIDHIIM 56
Query: 286 NP---------IILALANP-------LPEILPED----IKSVRNDAIIATGRSD-YPNQV 324
+ L+ + E+L + + ++ + + + Y Q
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 325 NNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMT-FGSE 383
+ + +F ++R + L ++ + V G + G
Sbjct: 117 DRLYNDNQVFA------KYNVSRLQPYLKLRQA--LLELRPAKNV-LIDG---VLGSG-- 162
Query: 384 CIIPKPFDPRLMIKIAPAVAIAAEKSGVATKPIKDIEIYTNHLQKFVYRSSAFMNPIFQI 443
K+ VA ++ IF +
Sbjct: 163 ------------------------KTWVALDVCLSYKV-----------QCKMDFKIFWL 187
Query: 444 AKKARKNIKRIIYSEGEEEKILRAIQ---VVIDENLAFPILIGRTKILEQHIKKLRLRI- 499
N+K E +L +Q ID N L H + LR
Sbjct: 188 ------NLKN----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 500 ---KPG-----I-----HFEIIDP-DF---------NKQYKDY----WKTYLSMTNR--- 529
KP + + + + + KQ D+ T++S+ +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 530 ------KGMIEQYAQLK-------MRKCN----TLIGAMAIHKGNADGMICGILGSTKLH 572
K ++ +Y + + N ++I I G A
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES-IRDGLA-------------T 343
Query: 573 LNYIDQIIGKKNKTNIYAAMSNLILMD-RQL--MLV----DTHINENPNA-------EEL 618
+ + K T I ++++ L + R++ L HI P + +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI---PTILLSLIWFDVI 400
Query: 619 SEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMN 678
++ K+ L + + IS I LE+ ++
Sbjct: 401 KSDVMVVVNKLHKYSL-----VEKQPK---ESTISIP-------SIY-----LELKVKLE 440
Query: 679 GNYALNNELL-HKQIPNSKLTGDANLLVLPNIES---ANIAYNLLKI 721
YAL+ ++ H IP + D++ L+ P ++ ++I ++L I
Sbjct: 441 NEYALHRSIVDHYNIPKTF---DSDDLIPPYLDQYFYSHIGHHLKNI 484
Score = 45.6 bits (107), Expect = 6e-05
Identities = 74/420 (17%), Positives = 123/420 (29%), Gaps = 155/420 (36%)
Query: 3 NFKKNFCKKSHQSA---LEYHEFPIPGKIS-VIPSKQLSNQ----DDLALAYSPGVASA- 53
N+ +S S+ L H I ++ ++ SK N ++ + +A
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHS--IQAELRRLLKSKPYENCLLVLLNV---QNAKAWNAF 262
Query: 54 ---CEEIVSNSNNVFKYTTKGNLVA--VITNGTAVLGMGNIGPLASKPVMEGKAVLFKKF 108
C+ ++ TT+ V + T + + + + E K+ L K+
Sbjct: 263 NLSCKILL---------TTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKS-LLLKY 310
Query: 109 AGIDVFDL--EINETDP-------------------------DKLCDII-FSLEPTFGGI 140
DL E+ T+P DKL II SL
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN------ 364
Query: 141 NLEDIKAPECFY---IEKKLRNHMKIP-----------VFHDDQHGTAIIVGSAILNGLK 186
LE + + F + IP + D ++N L
Sbjct: 365 VLEPAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMV---------VVNKLH 412
Query: 187 ---LVKKKMKD---------CKLVVSGAGAAALACLDLIID-----LGFPLQNIFVTDLA 229
LV+K+ K+ +L V AL I+D F ++ L
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 230 GVLY---------KGRSELMDSNKA-----RFIK-----DTTAR--------TLSD---- 258
Y E M + RF++ D+TA TL
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 259 ---IIPNADIFLGLSVSGVLKKEMVLQMAKNPII--------LALANPLPEILPEDIKSV 307
I N + L V+ +L + ++ +N I +AL I E K V
Sbjct: 531 KPYICDNDPKYERL-VNAILD--FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 4e-08
Identities = 113/650 (17%), Positives = 185/650 (28%), Gaps = 262/650 (40%)
Query: 12 SHQSALEYHEFPIP--------------GKISVIPSKQLSNQDD------LA---LAY-- 46
SH S LE H +P KI P++ + D+ L L Y
Sbjct: 12 SHGS-LE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 47 ---SPGVASACEEIVSNSNNVFKYT-TKGN----LVA---------------VITNGTAV 83
P +++++ F+ +GN L A +I N
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 84 LGMGNIGPLASKP-------VMEGKAVLFKKFAG----IDVFD-L-EINETDPDKLCDII 130
M P K V EG A L F G D F+ L ++ +T + D+I
Sbjct: 130 RIMAKR-PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 131 FSLEPTFGGINLEDIKAPECFY----IEKKLRNHMKIPVFHDDQHGTAIIVGSAI---LN 183
T + + A + F I + L N P + ++ I L
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLEN----P---SNTPDKDYLLSIPISCPLI 241
Query: 184 GL----------KLVKKKMKDCKLVVSGA--------GAAALAC-------LDLIIDLGF 218
G+ KL+ + + + GA A A+A +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-- 299
Query: 219 PLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPNADIFLG-----LSVSG 273
+ +F + + L L D + N + G LS+S
Sbjct: 300 -ITVLFFIGVRCYEAYPNTSL------------PPSILEDSLENNE---GVPSPMLSISN 343
Query: 274 VLKKEMVLQMAKNPIILALANPLPEILPEDIK---SVRNDAIIATGRSDYPNQVNNVLC- 329
+ +++ +Q + N LP + S+ N G N V+
Sbjct: 344 LTQEQ--VQD-----YVNKTN---SHLPAGKQVEISLVN------GAK------NLVVSG 381
Query: 330 FP---YIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECII 386
P Y L R+ A + L +QS I
Sbjct: 382 PPQSLYGLNLTL--------RK-----AKAPSGL---DQSRI------------------ 407
Query: 387 PKPFDPRLMIKIAPAV---AIAAEKSGVATKPIKDIEIYTNHLQKFVYRSSAFMNPIFQI 443
PF R K+ + +A+ P + H S + P +
Sbjct: 408 --PFSER---KLKFSNRFLPVAS--------P------F--H--------SHLLVPASDL 438
Query: 444 AKK--ARKNIK------RI-IYS--EGEEEKILRAIQVVIDENLAFPILIGR-------- 484
K + N+ +I +Y +G + LR + I E + I+
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSD---LRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 485 ---TKILE------QHIKKLRLRIKPGIHFEII---------DPDF-NKQ 515
T IL+ + L R K G +I D D+ KQ
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 52.0 bits (124), Expect = 8e-07
Identities = 90/627 (14%), Positives = 172/627 (27%), Gaps = 254/627 (40%)
Query: 287 PIILALAN-----PLP-------EILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYI- 333
P+ L+ + +P L E + + D P L ++
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE-LVGKFLG 66
Query: 334 F---------RGALDSGATTITREMEIAA-----VHAI-ADLAQIEQSDIVNTTYGITNM 378
+ G D E E +HA+ A L Q + +V T I N
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN- 125
Query: 379 TFGSECIIPKPFDPRLMIKIAPAVAIAAEKS-----------GVATKPIKDI----EIYT 423
+ + +PFD + A+ A + G +++ + Y
Sbjct: 126 YITARIMAKRPFDKK----SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 424 NHLQKFVYRSSAFMNPIFQIAKKARKNIKRIIYSEG--------EEEKI-----LRAIQV 470
+ + S+ ++ + + A K ++++G L +I +
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEK-----VFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 471 VIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRK 530
+ P LIG ++ H+ +
Sbjct: 237 ------SCP-LIGVIQLA---------------HYVVT---------------------- 252
Query: 531 GMIEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYA 590
L G G + G G ++ +
Sbjct: 253 -------------AKLL-G---FTPGELRSYLKGATGHSQ----------------GLVT 279
Query: 591 AMSNLILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSLGLK-----PRVAL----L 641
A+ I D+ E A +F +G++ P +L L
Sbjct: 280 AV--AIAE------TDS-------WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 642 SNS---NFG------SNNNISAHKMRTALKLIQKQMPE---LEI---DGEMN----GN-- 680
+S N G S +N++ +++ + +P +EI +G N G
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 681 --YALNNELLHK----------QIP-------------------NSKLTGDANLLVLPNI 709
Y LN L K +IP +S L A+ L+ ++
Sbjct: 385 SLYGLNLT-LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 710 ESANIAYNL--LKIT---SGNGV-------AIGPILLGC--SKPIH---ILTSSAT---- 748
N+++N ++I + +G +I ++ C P+ AT
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 749 ------------VRRIVNMTALCVIDA 763
R + T + VI A
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 49.3 bits (117), Expect = 5e-06
Identities = 53/372 (14%), Positives = 102/372 (27%), Gaps = 152/372 (40%)
Query: 80 GTAVLGMGNIGPLASKPVMEGKAVLFKKFAGI-DVFDLEINETDPDKLCDIIFSLEPTFG 138
G+ GMG M+ L+K DV++ D + T+G
Sbjct: 1625 GSQEQGMG----------MD----LYKTSKAAQDVWN----RAD--------NHFKDTYG 1658
Query: 139 GINLEDIKAPECFYIEKKLRNHMKIPVFH-DDQHGTAI------IVGSAILNGLKLVKKK 191
F I + N+ H + G I ++ I++G +K
Sbjct: 1659 ------------FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 192 MKDCKLVVSG---AGAAALACLDLIIDLGFPLQN----IFVTDLAGVLYKGRSELMDSNK 244
K+ + L L Q + + + A + E + K
Sbjct: 1707 FKEINEHSTSYTFRSEKGL--LSAT-------QFTQPALTLMEKA--AF----EDL---K 1748
Query: 245 ARFIKDTTARTLSDIIPNADIFLGLS---------VSGVLKKEMVLQMAKNPIILAL-AN 294
++ + IP F G S ++ V+ E +++ ++
Sbjct: 1749 SKGL-----------IPADATFAGHSLGEYAALASLADVMSIESLVE------VVFYRGM 1791
Query: 295 PLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAV 354
+ +P D N +IA P +V A + ++E A+
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAIN----PGRV-----------------AASFSQE----AL 1826
Query: 355 HAIADLAQIEQSD---IVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGV 411
+ + IVN Y + N A + +
Sbjct: 1827 QYVVERVGKRTGWLVEIVN--YNVENQQ----------------------YVAAGDLRAL 1862
Query: 412 --ATKPIKDIEI 421
T + I++
Sbjct: 1863 DTVTNVLNFIKL 1874
Score = 45.0 bits (106), Expect = 1e-04
Identities = 54/294 (18%), Positives = 100/294 (34%), Gaps = 94/294 (31%)
Query: 529 RKGM-IEQYAQLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHL---NYIDQII---- 580
+GM ++ Y K A + AD G + L + N ++ I
Sbjct: 1628 EQGMGMDLYKTSKA--------AQDVWN-RADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 581 --GKKNKTNIYAAMSNLILMDRQLML--VDTHINENPN-------AEELS--EIT---IL 624
GK+ + N Y+AM ++D +L + INE+ LS + T +
Sbjct: 1679 EKGKRIREN-YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 625 AA-----KKMFSLGLKPRV------------ALLSNSNFGSNNNISAHKMRTALKL---- 663
+ + S GL P AL S ++ +S + + +++
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV-----MS---IESLVEVVFYR 1789
Query: 664 ---IQKQMPELEIDGEMNGNYALN---------NELLHKQIPNSKLTGDANLLVLPNIES 711
+Q +P E+ G A+N E L + ++ LV E
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV--ERVGKRTGWLV----EI 1843
Query: 712 ANIAYNLLK---ITSGNGVAI---GPIL--LGCSKPIHI--LTSSATVRRIVNM 755
N YN+ + +G+ A+ +L + + I I L S ++ +
Sbjct: 1844 VN--YNVENQQYVAAGDLRALDTVTNVLNFIK-LQKIDIIELQKSLSLEEVEGH 1894
Score = 43.9 bits (103), Expect = 2e-04
Identities = 61/323 (18%), Positives = 99/323 (30%), Gaps = 132/323 (40%)
Query: 3 NFKKNFCKKSHQSALEY--------HE-FP---IPGKI---SV-----IPSKQLS----N 38
+F + + A+ +E +P +P I S+ +PS LS
Sbjct: 291 SFFVSV-----RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 39 QDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNLVAV-ITNG--TAVLGMGNIGPLASK 95
Q+ + ++ V+ +N + G V + + NG V+ GP S
Sbjct: 346 QEQV------------QDYVNKTN---SHLPAGKQVEISLVNGAKNLVVS----GPPQS- 385
Query: 96 PVMEGKAVLFKKF---AGID-----------VFD---LEINETDPDKLCDIIF-S--LEP 135
+ G + +K +G+D F L + P F S L P
Sbjct: 386 --LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV--ASP-------FHSHLLVP 434
Query: 136 TFGGINLEDIKAPECFYIEKKLRNHMKIPVFH-----DDQHGTAIIVGSAILNGLKLVKK 190
I +D+ + K + +IPV+ D + + I +V
Sbjct: 435 ASDLI-NKDLVKNNVSFNAKDI----QIPVYDTFDGSDLRVLSGSISER-------IVDC 482
Query: 191 KMKDC----KLVVSGAGAAALACLDLIIDLGFPLQNIFVTDLAGVLYKGRSELMDSNK-- 244
++ A I+D G P G G L NK
Sbjct: 483 IIRLPVKWETTTQFKA--------THILDFG-P----------GGA-SGLGVLTHRNKDG 522
Query: 245 --ARFIKDTTARTLSDIIPNADI 265
R I A TL DI P+ D
Sbjct: 523 TGVRVI---VAGTL-DINPDDDY 541
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 34.6 bits (79), Expect = 0.13
Identities = 20/251 (7%), Positives = 52/251 (20%), Gaps = 64/251 (25%)
Query: 278 EMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGA 337
M + NP+I+ + + PE + + + + L I +
Sbjct: 80 RMGFEEYINPVIVDERDIYKQFGPEAM-----AVLDRCFYLAGLPRPDVGLSDEKISQIE 134
Query: 338 LDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIK 397
+ +E + + ++ D+V I +++
Sbjct: 135 KLGIKVSEHKE-SLQKILHGYKKGTLDGDDLVLEISNALE--------ISSEMGLKILED 185
Query: 398 IAPAVAIAAEKSGVA-----TKPIKDIEIYTNHLQKF----------VYRSSAFMN---- 438
+ P S + + +K +R +
Sbjct: 186 VFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHL 245
Query: 439 PIF-QIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKL-- 495
+ + E + I E + +
Sbjct: 246 MTYHSA--------------SC----------AIAGEGVDINDGKA---IAEGLLSQFGF 278
Query: 496 -RLRIKPGIHF 505
+ P
Sbjct: 279 TNFKFIPDEKK 289
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.23
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 6/23 (26%)
Query: 489 EQHIKKLRLRIKPGIHFEIIDPD 511
+Q +KKL+ +K + D
Sbjct: 19 KQALKKLQASLKL---YA---DD 35
Score = 32.2 bits (72), Expect = 0.26
Identities = 7/19 (36%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 388 KPFDPRLMIKIAPAVAIAA 406
K + APA+AI A
Sbjct: 30 KLYAD----DSAPALAIKA 44
Score = 29.1 bits (64), Expect = 3.3
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 27 KISVIPSKQLSNQDDLALAYSPGVASA 53
K ++ K+L Q L L Y+ A A
Sbjct: 19 KQAL---KKL--QASLKL-YADDSAPA 39
Score = 29.1 bits (64), Expect = 3.5
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 155 KKLRNHMKIPVFHDDQHGTAIIVGSAI 181
KKL+ +K+ + DD A+ + + +
Sbjct: 23 KKLQASLKL--YADDS-APALAIKATM 46
Score = 28.8 bits (63), Expect = 4.3
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 653 SAHKMRTALKLIQ-KQMPELEIDGEM 677
+ K++ +LKL P L I M
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATM 46
>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein,
iron transporter, TONB-dependent receptor, siderophore;
HET: LDA HTO; 2.00A {Escherichia coli K12} SCOP: f.4.3.3
PDB: 1kmp_A* 1po0_A* 1pnz_A* 1po3_A* 2d1u_A 1zzv_A
Length = 774
Score = 34.0 bits (78), Expect = 0.23
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 6/32 (18%)
Query: 24 IPGKISVIPSKQLSNQ-----DDLALAYSPGV 50
G VI + + + L PGV
Sbjct: 133 HAGARDVIRREDFAKTGATTMRE-VLNRIPGV 163
>2wzp_R Lactococcal phage P2 ORF16; baseplate, viral protein; 2.60A
{Lactococcus phage P2} PDB: 2x53_Y 2x54_Y 2x5a_Y
Length = 375
Score = 33.2 bits (75), Expect = 0.35
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 300 LPEDIKSVRNDAIIATGRSDY---PNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHA 356
+P I N AII DY PN+ NN++ + Y F ++ +G TI R+ E ++ H
Sbjct: 121 VPNAITKTTNFAII-----DYLIDPNK-NNLMSYGYFFNSSIFAGKATINRKAETSSAHD 174
Query: 357 IA 358
+A
Sbjct: 175 VA 176
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 32.6 bits (74), Expect = 0.52
Identities = 20/251 (7%), Positives = 52/251 (20%), Gaps = 64/251 (25%)
Query: 278 EMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGA 337
M + NP+I+ + + PE + + + + L I +
Sbjct: 80 RMGFEEYINPVIVDERDIYKQFGPEAM-----AVLDRCFYLAGLPRPDVGLSDEKISQIE 134
Query: 338 LDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIK 397
+ +E + + ++ D+V I +++
Sbjct: 135 KLGIKVSEHKE-SLQKILHGYKKGTLDGDDLVLEISNALE--------ISSEMGLKILED 185
Query: 398 IAPAVAIAAEKSGVA-----TKPIKDIEIYTNHLQKF----------VYRSSAFMN---- 438
+ P S + + +K +R +
Sbjct: 186 VFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHL 245
Query: 439 PIF-QIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKL-- 495
+ + E + I E + +
Sbjct: 246 MTYHSA--------------SC----------AIAGEGVDINDGKA---IAEGLLSQFGF 278
Query: 496 -RLRIKPGIHF 505
+ P
Sbjct: 279 TNFKFIPDEKK 289
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase,
IPNV; 3.80A {Infectious pancreatic necrosis virus}
Length = 770
Score = 32.7 bits (73), Expect = 0.52
Identities = 38/243 (15%), Positives = 74/243 (30%), Gaps = 19/243 (7%)
Query: 483 GRTKILEQHIKKLRLRIK----PGIHFEIIDP-DFNKQYKDYWKTYLSMTNRKGMIEQYA 537
+ IL +K ++ P DP D + + K R I
Sbjct: 10 NKASILTALMKSTTGDVEDVLIPKRFRPAKDPLDSPQAAAQFLKDNKYRILRPRAIPTMV 69
Query: 538 QLKMRKCNTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLIL 597
+L+ + M D + G+T + Y ++ + A +L
Sbjct: 70 ELETDAALPRLRQMVEDGKLKDTVSVPE-GTTAFYPKYYPFHKPDHDEVGTFGAPDITLL 128
Query: 598 MDRQLMLVDTHINENPNAEELSEITILAAKKMFS----LGLKPRVALLSNSNFGSNNNIS 653
L++ P E L ++ A + G R+ + G N N +
Sbjct: 129 KQLTFFLLENDFPTGP--ETLRQVREAIATLQYGSGSYSGQLNRLLAMKGVATGRNPNKT 186
Query: 654 AHKM----RTALKLIQKQMPELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNI 709
+ KL+++ +P E + L++ L+ D + L I
Sbjct: 187 PKTVGYTNEQLAKLLEQTLPINTPKHEDPDLRWAPSWLIN---YTGDLSTDKSYLPHVTI 243
Query: 710 ESA 712
+S+
Sbjct: 244 KSS 246
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 31.8 bits (72), Expect = 0.69
Identities = 27/224 (12%), Positives = 64/224 (28%), Gaps = 27/224 (12%)
Query: 108 FAGIDVFDLEINETDPDKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMK----- 162
+ +D L I+ T+ D IFS E + + C ++
Sbjct: 56 WNTVDAILLPISGTNEAGKVDTIFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCMKK 115
Query: 163 -----IPVFHDDQHG---TAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLII 214
+ + D + I+ ++ + + V G G ++
Sbjct: 116 TNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFA 175
Query: 215 DLGFPLQNIFVTDLAGVLYKGRSELMDSNKARFIKDTTART--LSDIIPNADIFLGLSVS 272
LG A V R + + + + + D+ + +
Sbjct: 176 ALG-----------AKVKVGARESD-LLARIAEMGMEPFHISKAAQELRDVDVCINTIPA 223
Query: 273 GVLKKEMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIATG 316
V+ ++ +M + ++ LA+ + A++ G
Sbjct: 224 LVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPG 267
>3qlb_A FETA, enantio-pyochelin receptor; membrane protein, transport,
ferri-enantiopyochelin, outer M metal transport; HET:
CIT EFE; 3.26A {Pseudomonas fluorescens}
Length = 748
Score = 32.3 bits (74), Expect = 0.69
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 24 IPGKISVIPSKQLSNQ-----DDLALAYSPGVAS 52
IP ISVI Q+ Q ++ AL Y+ GV +
Sbjct: 101 IPQSISVITRDQMDAQQVQSVNE-ALRYTAGVQA 133
>1qfg_A FHUA, protein (ferric hydroxamate uptake receptor);
TONB-dependent receptor, integral outer membrane
protein, ferrichrome-iron receptor; HET: PA1 GCN KDO
GMH GLC GLA FTT DAO MYR DDQ; 2.50A {Escherichia coli}
SCOP: f.4.3.3 PDB: 1qff_A* 1qjq_A* 1qkc_A* 2grx_A*
1fi1_A* 2fcp_A* 1by5_A* 1by3_A* 1fcp_A*
Length = 725
Score = 31.6 bits (72), Expect = 1.2
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 24 IPGKISVIPSKQLSNQ-----DDLALAYSPGVAS 52
+P ISV+ +++++ + AL+Y+PGV+
Sbjct: 46 VPQSISVVTAEEMALHQPKSVKE-ALSYTPGVSV 78
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 31.5 bits (71), Expect = 1.2
Identities = 20/251 (7%), Positives = 52/251 (20%), Gaps = 64/251 (25%)
Query: 278 EMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGA 337
M + NP+I+ + + PE + + + + L I +
Sbjct: 80 RMGFEEYINPVIVDERDIYKQFGPEAM-----AVLDRCFYLAGLPRPDVGLSDEKISQIE 134
Query: 338 LDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIK 397
+ +E + + ++ D+V I +++
Sbjct: 135 KLGIKVSEHKE-SLQKILHGYKKGTLDGDDLVLEISNALE--------ISSEMGLKILED 185
Query: 398 IAPAVAIAAEKSGVA-----TKPIKDIEIYTNHLQKF----------VYRSSAFMN---- 438
+ P S + + +K +R +
Sbjct: 186 VFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHL 245
Query: 439 PIF-QIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKL-- 495
+ + E + I E + +
Sbjct: 246 MTYHSA--------------SC----------AIAGEGVDINDGKA---IAEGLLSQFGF 278
Query: 496 -RLRIKPGIHF 505
+ P
Sbjct: 279 TNFKFIPDEKK 289
>3dd7_A DOC, death on curing protein; all alpha, ribosome inhibitor; HET:
MSE; 1.70A {Enterobacteria phage P1} PDB: 3dd9_A 3k33_A
3kh2_A
Length = 135
Score = 29.7 bits (66), Expect = 2.0
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 122 DPDKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDDQHGTAIIVGSAI 181
DP + II ++ + D+ Y+ R ++ F+D TA+
Sbjct: 28 DPGRAEAIIGRVQARVAYEEITDLFEVSATYLVATARGYI----FNDANKRTALNSALLF 83
Query: 182 L--NGLKLV 188
L NG+++
Sbjct: 84 LRRNGVQVF 92
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 30.3 bits (68), Expect = 2.6
Identities = 20/251 (7%), Positives = 52/251 (20%), Gaps = 64/251 (25%)
Query: 278 EMVLQMAKNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGA 337
M + NP+I+ + + PE + + + + L I +
Sbjct: 80 RMGFEEYINPVIVDERDIYKQFGPEAM-----AVLDRCFYLAGLPRPDVGLSDEKISQIE 134
Query: 338 LDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIK 397
+ +E + + ++ D+V I +++
Sbjct: 135 KLGIKVSEHKE-SLQKILHGYKKGTLDGDDLVLEISNALE--------ISSEMGLKILED 185
Query: 398 IAPAVAIAAEKSGVA-----TKPIKDIEIYTNHLQKF----------VYRSSAFMN---- 438
+ P S + + +K +R +
Sbjct: 186 VFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHL 245
Query: 439 PIF-QIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKL-- 495
+ + E + I E + +
Sbjct: 246 MTYHSA--------------SC----------AIAGEGVDINDGKA---IAEGLLSQFGF 278
Query: 496 -RLRIKPGIHF 505
+ P
Sbjct: 279 TNFKFIPDEKK 289
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein
structure initiative, NESG, reduced dimensionality PSI;
NMR {Aquifex aeolicus} SCOP: b.124.1.1
Length = 124
Score = 28.8 bits (65), Expect = 2.9
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 433 SSAFMNPIFQIAKKARKNIKRIIYSEGEEEKILR 466
IF++ KA + IK++ E ILR
Sbjct: 2 QEQAQQFIFKVTDKAVEEIKKVAQENNIENPILR 35
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel,
RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP:
c.6.3.2 PDB: 2czv_A*
Length = 212
Score = 29.2 bits (65), Expect = 4.5
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 442 QIAKKARKNIKRIIYSEGEEEKILRAI---QVVIDENLAFPILIGRTKILEQHIKKLRLR 498
+ +K +IY E + +++R V + P + + ++ + +L
Sbjct: 66 LVRDTVQKFKSYLIYVESNDLRVIRYSIEKGVDA---IISPWVNRKDPGIDHVL--AKLM 120
Query: 499 IKPGIHFEI 507
+K +
Sbjct: 121 VKKNVALGF 129
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 28.7 bits (65), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 469 QVVIDENLAFPILIGRTKILEQHIKKLRL 497
V ID P L R +I EQH+K L+L
Sbjct: 171 HVFIDL----PTLQERREIFEQHLKSLKL 195
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A
{Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A*
3pga_1
Length = 337
Score = 28.7 bits (65), Expect = 7.0
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 32/107 (29%)
Query: 311 AIIATG-----RSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQ 365
I+ATG + A + + IA V +ADLA +
Sbjct: 13 VILATGGTIAGAGASAA-------------NSATYQAAKVGVDKLIAGVPELADLANVRG 59
Query: 366 SDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVAIAAEKSGVA 412
++ ++T ++K+ VA A+ + V
Sbjct: 60 EQVMQI--ASESIT------------NDDLLKLGKRVAELADSNDVD 92
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 26.7 bits (60), Expect = 7.4
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 615 AEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNN--ISAHKMRTALKLIQKQMPELE 672
AE LSE I K++F + ++N+ I+ +++ LK + ++ E E
Sbjct: 14 AERLSEEEIGGLKELFKM-------------IDTDNSGTITFDELKDGLKRVGSELMESE 60
Query: 673 IDGEMN 678
I M+
Sbjct: 61 IKDLMD 66
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 28.8 bits (63), Expect = 8.5
Identities = 17/125 (13%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 440 IFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLR--- 496
+ +I K + + I++ +E++LR + + + ++ G+ +L K
Sbjct: 769 VEKIQKWDEETFAKKIHNLQMKERVLRDSR---RKEIKPKVVEGQKNLLCGKCKAYACST 825
Query: 497 --LRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIH 554
+RI H ++ F ++Y M + + C G +
Sbjct: 826 DDIRIIKDSHHIVLGEAFKERYTTK-PHKKPMQFDGFEKKSKMYCRNNNCQHDWGITVKY 884
Query: 555 KGNAD 559
+
Sbjct: 885 LTFDN 889
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,772,875
Number of extensions: 767658
Number of successful extensions: 1895
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1809
Number of HSP's successfully gapped: 63
Length of query: 766
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 665
Effective length of database: 3,881,772
Effective search space: 2581378380
Effective search space used: 2581378380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)