RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14495
(766 letters)
>d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus subtilis
[TaxId: 1423]}
Length = 324
Score = 243 bits (621), Expect = 8e-75
Identities = 94/329 (28%), Positives = 164/329 (49%), Gaps = 7/329 (2%)
Query: 437 MNPIFQ-IAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKL 495
M +F + +K +I++ EG +E+IL A+ + + PI+IG ++ K+L
Sbjct: 2 MADLFSTVQEKVAGKDVKIVFPEGLDERILEAVSKLAGNKVLNPIVIGNENEIQAKAKEL 61
Query: 496 RLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHK 555
L + +I DP + +D + + + RKG + K G M ++K
Sbjct: 62 NLTLG---GVKIYDPHTYEGMEDLVQAF--VERRKGKATEEQARKALLDENYFGTMLVYK 116
Query: 556 GNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNA 615
G ADG++ G ST + QII K + + + + Q + D IN P++
Sbjct: 117 GLADGLVSGAAHSTADTVRPALQIIKTKEGVKKTSGVFIMARGEEQYVFADCAINIAPDS 176
Query: 616 EELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDG 675
++L+EI I +A ++PRVA+LS S GS + K+ A+K+ +++ PEL +DG
Sbjct: 177 QDLAEIAIESANTAKMFDIEPRVAMLSFSTKGSAKSDETEKVADAVKIAKEKAPELTLDG 236
Query: 676 EMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLG 735
E + A + K+ P+S++ GDAN+ V P++E+ NI Y + + GN A+GPIL G
Sbjct: 237 EFQFDAAFVPSVAEKKAPDSEIKGDANVFVFPSLEAGNIGYKIAQ-RLGNFEAVGPILQG 295
Query: 736 CSKPIHILTSSATVRRIVNMTALCVIDAL 764
+ P++ L+ + N+ + AL
Sbjct: 296 LNMPVNDLSRGCNAEDVYNLALITAAQAL 324
>d1r5ja_ c.77.1.5 (A:) Phosphotransacetylase Pta {Streptococcus
pyogenes [TaxId: 1314]}
Length = 329
Score = 237 bits (606), Expect = 2e-72
Identities = 88/331 (26%), Positives = 161/331 (48%), Gaps = 9/331 (2%)
Query: 437 MNPIFQ-IAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKL 495
+ +F + +K +I++ EG +E+++RA + E L PI++G+++ + + KL
Sbjct: 3 IRSLFGGLREKILGKNMKIVFPEGNDERVVRAAARLKFEGLLEPIILGQSEEVRNLLTKL 62
Query: 496 RLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHK 555
+ + II+P+ + + ++ + RKG KM + G M +
Sbjct: 63 GFADQ---DYTIINPNEYADFDKMKEAFVEV--RKGKATLEDADKMLRDVNYFGVMLVKM 117
Query: 556 GNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMD--RQLMLVDTHINENP 613
G ADGM+ G + ST + QII K + + + + + + + D IN +P
Sbjct: 118 GLADGMVSGAIHSTADTVRPALQIIKTKPGISRTSGVFLMNRENTSERYVFADCAINIDP 177
Query: 614 NAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEI 673
A+EL+EI + A+ + P++A+LS S GS K+R A ++ P+L +
Sbjct: 178 TAQELAEIAVNTAETAKIFDIDPKIAMLSFSTKGSGKAPQVDKVREATEIATGLNPDLAL 237
Query: 674 DGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPIL 733
DGE+ + A E + P+S + G AN V P+++S NI Y + + G AIGPIL
Sbjct: 238 DGELQFDAAFVPETAAIKAPDSAVAGQANTFVFPDLQSGNIGYKIAQ-RLGMFDAIGPIL 296
Query: 734 LGCSKPIHILTSSATVRRIVNMTALCVIDAL 764
G +KP++ L+ ++ I + + A+
Sbjct: 297 QGLNKPVNDLSRGSSAEDIYKLAIITAAQAI 327
>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta
{Methanosarcina thermophila [TaxId: 2210]}
Length = 332
Score = 237 bits (606), Expect = 2e-72
Identities = 79/337 (23%), Positives = 155/337 (45%), Gaps = 14/337 (4%)
Query: 437 MNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLR 496
+ + +I+++A+K K I E E+ + L+A +++ +A +L+G ++ L
Sbjct: 1 VTFLEKISERAKKLNKTIALPETEDIRTLQAAAKILERGIADIVLVGNEADIKALAGDLD 60
Query: 497 LRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKG 556
L +I+DP ++ +Y + + KG+ + A ++ M G
Sbjct: 61 LSK-----AKIVDPKTYEKKDEYINAFYELRKHKGITLENAA-EIMSDYVYFAVMMAKLG 114
Query: 557 NADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILM------DRQLMLVDTHIN 610
DG++ G S+ L QI+ + +A + + D + D+ +
Sbjct: 115 EVDGVVSGAAHSSSDTLRPAVQIVKTAKGAALASAFFIISVPDCEYGSDGTFLFADSGMV 174
Query: 611 ENPNAEELSEITILAAKKM-FSLGLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMP 669
E P+ E+++ I +++AK + P+VA+LS S GS + + KL Q+ P
Sbjct: 175 EMPSVEDVANIAVISAKTFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAP 234
Query: 670 ELEIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAI 729
++ IDGE+ + A+ ++ + P S + G AN+ + P++ NIAY + + A
Sbjct: 235 DIAIDGELQVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQ-RLAKAEAY 293
Query: 730 GPILLGCSKPIHILTSSATVRRIVNMTALCVIDALSK 766
GPI G +KPI+ L+ + IV A+ + A ++
Sbjct: 294 GPITQGLAKPINDLSRGCSDEDIVGAVAITCVQAAAQ 330
>d1vmia_ c.77.1.5 (A:) Ethanolamine utilization protein EutD
{Escherichia coli [TaxId: 562]}
Length = 329
Score = 229 bits (586), Expect = 1e-69
Identities = 80/330 (24%), Positives = 159/330 (48%), Gaps = 9/330 (2%)
Query: 435 AFMNPIFQIAKKARKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKK 494
A I + + A + R+++ + ++++L+A Q + + LA PIL+ L Q
Sbjct: 4 ALRAIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPILVANPFELRQFALS 63
Query: 495 LRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIH 554
+ + ++IDP N ++ + R G L+ + A +
Sbjct: 64 HGVAMD---GLQVIDPHGNLAMREEFAHRWLA--RAGEKTPPDALEKLTDPLMFAAAMVS 118
Query: 555 KGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLIL--MDRQLMLVDTHINEN 612
G AD I G L ST L +IIG + +++ ++ L D +
Sbjct: 119 AGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSSIFLMLPQYSGPALGFADCSVVPQ 178
Query: 613 PNAEELSEITILAAKKMFSLG-LKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPEL 671
P A +L++I + +A+ ++ +PRVA+LS S+ GS + ++ A ++++++ P+L
Sbjct: 179 PTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANVQQATEIVRERAPKL 238
Query: 672 EIDGEMNGNYALNNELLHKQIPNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGP 731
+DGE+ + A E+ ++ P S L G AN++V P++E+ NI Y + + G A+GP
Sbjct: 239 VVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQ-RLGGYRAVGP 297
Query: 732 ILLGCSKPIHILTSSATVRRIVNMTALCVI 761
++ G + P+H L+ +V+ I+ + + +
Sbjct: 298 LIQGLAAPMHDLSRGCSVQEIIELALVAAV 327
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme)
{Thermotoga maritima [TaxId: 2336]}
Length = 154
Score = 222 bits (568), Expect = 2e-69
Identities = 75/153 (49%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 16 ALEYHEFPIPGKISVIPSKQLSNQDDLALAYSPGVASACEEIVSNSNNVFKYTTKGNLVA 75
ALE H F GKI + +++ L+L Y+PGVA + + YT++ N VA
Sbjct: 3 ALEVHRFL-KGKIRTALPVEKVDRETLSLLYTPGVADVARACAEDPEKTYVYTSRWNTVA 61
Query: 76 VITNGTAVLGMGNIGPLASKPVMEGKAVLFKKFAGIDVFDLEINETDPDKLCDIIFSLEP 135
V+++G+AVLG+GNIGP + PVMEGKA LFK FA ID F + ++E++ +K+ I+ SLEP
Sbjct: 62 VVSDGSAVLGLGNIGPYGALPVMEGKAFLFKAFADIDAFPICLSESEEEKIISIVKSLEP 121
Query: 136 TFGGINLEDIKAPECFYIEKKLRNHMKIPVFHD 168
+FGGINLEDI AP+CF I ++L M IPVFHD
Sbjct: 122 SFGGINLEDIGAPKCFRILQRLSEEMNIPVFHD 154
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 298
Score = 217 bits (554), Expect = 2e-65
Identities = 63/310 (20%), Positives = 123/310 (39%), Gaps = 48/310 (15%)
Query: 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLG--------FPLQNI 223
GTA + + +L L++ K ++ D ++ GAG AAL +LI+ ++ I
Sbjct: 3 GTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRI 62
Query: 224 FVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPN---ADIFLGLSVSGVLKKEMV 280
++ D G++ KGR+ L + + + L DI+ + + ++ G ++++
Sbjct: 63 WMVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQIL 122
Query: 281 LQM---AKNPIILALANPLPEILPEDIK--------------SVRNDAIIATGRSDYPNQ 323
M K PII AL+NP + + S + + +G++ YP Q
Sbjct: 123 QDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQ 182
Query: 324 VNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSE 383
NN FP + G + G I ++ + IA E
Sbjct: 183 GNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEEN--------------LQEG 228
Query: 384 CIIPKPFDPR-LMIKIAPAVAIAAEKSGVATKPI--KDIEIYT-NHLQKFVYRSSAFMNP 439
+ P + + +KIA +A A ++ A+ +D+E + + + Y F+
Sbjct: 229 RLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNC--FVAD 286
Query: 440 IFQIAKKARK 449
+ ++A K
Sbjct: 287 SYTWPEEAMK 296
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic
enzyme {Human (Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 214 bits (547), Expect = 2e-64
Identities = 59/298 (19%), Positives = 107/298 (35%), Gaps = 49/298 (16%)
Query: 171 HGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLG--------FPLQN 222
GTA + + +L K++ K + + K++ GAG AAL +LI+ +
Sbjct: 2 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKK 61
Query: 223 IFVTDLAGVLYKGRSELMDSNKARFI---KDTTARTLSDII---PNADIFLGLSVSGVLK 276
I++ D G+L KGR +DS + F ++ T D + + I +
Sbjct: 62 IWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFT 121
Query: 277 KEMVLQM---AKNPIILALANPLPEILPEDIK--------------SVRNDAIIATGRSD 319
+++ M + P+I AL+NP + + S + GR
Sbjct: 122 PDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVF 181
Query: 320 YPNQVNNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMT 379
P Q NNV FP + + I+ + + A A+ +T+
Sbjct: 182 TPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQ--------------LTDEE 227
Query: 380 FGSECIIPKPFDPRLM-IKIAPAVAIAAEKSGVATK--PIKDIEIY-TNHLQKFVYRS 433
+ P + + + I IA V + +A + +D Y + Y S
Sbjct: 228 LAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSEYDS 285
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 308
Score = 214 bits (545), Expect = 5e-64
Identities = 60/310 (19%), Positives = 119/310 (38%), Gaps = 47/310 (15%)
Query: 172 GTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLG--------FPLQNI 223
GTA ++ + +L ++ KK + K + GAGAA+ ++I+ I
Sbjct: 3 GTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRI 62
Query: 224 FVTDLAGVLYKGRSELMDSNKARFIKDTTARTLSDIIPN---ADIFLGLSVSGVLKKEMV 280
++ D+ G++ K R E+ + ++ ++I + +V G +E++
Sbjct: 63 YLMDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVI 122
Query: 281 LQMA---KNPIILALANPLPEI--LPEDIKSVRNDAIIATGRSDYPN-----------QV 324
MA + PII AL+NP + E+ + N A + S +PN Q
Sbjct: 123 RAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQG 182
Query: 325 NNVLCFPYIFRGALDSGATTITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSEC 384
NN FP + G + + ++ + A +A +
Sbjct: 183 NNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDS--------------LKVGR 228
Query: 385 IIPKPFDPRLM-IKIAPAVAIAAEKSGVATKP--IKDIEIYT-NHLQKFVYRSSAFMNPI 440
+ P+ + R + I+IA +A K+G A +D+E Y + Y +N
Sbjct: 229 VYPQLKEIREISIQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEE--LINAT 286
Query: 441 FQIAKKARKN 450
+ ++ ++
Sbjct: 287 YDWPEQDMRH 296
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme)
{Thermotoga maritima [TaxId: 2336]}
Length = 222
Score = 193 bits (491), Expect = 2e-57
Identities = 86/243 (35%), Positives = 132/243 (54%), Gaps = 26/243 (10%)
Query: 169 DQHGTAIIVGSAILNGLKLVKKKMKDCKLVVSGAGAAALACLDLIIDLGFPLQNIFVTDL 228
DQ GTA++V +A LN LKL +KK+++ K+VV+G GAA + ++DLG +N+ D
Sbjct: 1 DQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGV--KNVVAVDR 58
Query: 229 AGVLYKGRSE-LMDSNKARFIKDTT----ARTLSDIIPNADIFLGLSVSGVLKKEMVLQM 283
G+L + E ++ + T + L + AD F+G+S +LK E + +M
Sbjct: 59 KGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKPEWIKKM 118
Query: 284 AKNPIILALANPLPEILPEDIKSVRNDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGAT 343
++ P+I ALANP+PEI PE + I+ATGRSD+PNQVNN+L FP I +GA++ +
Sbjct: 119 SRKPVIFALANPVPEIDPELARE-AGAFIVATGRSDHPNQVNNLLAFPGIMKGAVEKRSK 177
Query: 344 TITREMEIAAVHAIADLAQIEQSDIVNTTYGITNMTFGSECIIPKPFDPRLMIKIAPAVA 403
M ++AV AIA E IIP+ FD ++ + + AV
Sbjct: 178 ITK-NMLLSAVEAIARS-----------------CEPEPERIIPEAFDMKVHLNVYTAVK 219
Query: 404 IAA 406
+A
Sbjct: 220 GSA 222
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 257
Score = 108 bits (271), Expect = 6e-27
Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 50/175 (28%)
Query: 42 LALAYSPGVASACE---EIVSNSNNVF-KYTTKGNL-------------VAVITNGTAVL 84
+ + Y+P V AC+ +F +G++ V+T+G +L
Sbjct: 86 MPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERIL 145
Query: 85 GMGNIGPLASKPVMEGKAVLFKKFAGID-------VFDLEINET----DP---------- 123
G+G++G + GK L+ G+ + D+ + DP
Sbjct: 146 GLGDLGC-YGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRI 204
Query: 124 ---------DKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDD 169
D+ + + S I ED F + K RN K F+DD
Sbjct: 205 RGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRN--KYCTFNDD 257
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
enzyme {Human (Homo sapiens) [TaxId: 9606]}
Length = 259
Score = 108 bits (271), Expect = 7e-27
Identities = 36/175 (20%), Positives = 57/175 (32%), Gaps = 50/175 (28%)
Query: 42 LALAYSPGVASACE---EIVSNSNNVF-KYTTKGNL-------------VAVITNGTAVL 84
+ + Y+P V AC I +F + +G++ V+T+G +L
Sbjct: 88 MPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERIL 147
Query: 85 GMGNIGPLASKPVMEGKAVLFKKFAGID-------VFDLEINET----DP---------- 123
G+G++G + GK L+ AGI D+ + DP
Sbjct: 148 GLGDLGV-YGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRD 206
Query: 124 ---------DKLCDIIFSLEPTFGGINLEDIKAPECFYIEKKLRNHMKIPVFHDD 169
D+ I I ED F +K R K F+DD
Sbjct: 207 RTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYRE--KYCTFNDD 259
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 294
Score = 104 bits (261), Expect = 3e-25
Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 52/177 (29%)
Query: 42 LALAYSPGVASACE---EIVSNSNNVF----------------KYTTKGNLVAVITNGTA 82
+ + Y+P V AC+ I ++ + + V+T+G
Sbjct: 121 MPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGER 180
Query: 83 VLGMGNIGPLASKPVMEGKAVLFKKFAGID-------VFDLEINET----DP-------- 123
+LG+G++G + GK L+ G+ + D+ N DP
Sbjct: 181 ILGLGDLGA-YGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHK 239
Query: 124 -------DKLCD-IIFSLEPTFGG---INLEDIKAPECFYIEKKLRNHMKIPVFHDD 169
D L D + + +G I ED P F + K ++ K +F+DD
Sbjct: 240 RVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQD--KYTMFNDD 294
>d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
PlsX {Bacillus subtilis [TaxId: 1423]}
Length = 334
Score = 36.2 bits (83), Expect = 0.011
Identities = 34/308 (11%), Positives = 78/308 (25%), Gaps = 20/308 (6%)
Query: 462 EKILRAIQVVIDENLAFPI-LIGRTKILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYW 520
+ ++ + I+ I L+G +E H+ RI E+I+P
Sbjct: 16 KAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTTSDRITVLHADEVIEPTDEPVRAVRR 75
Query: 521 KTYLSMTN-----RKGMIEQYAQLKMRKCNTLIGAMA---IHKGNADGMICGILGSTKLH 572
K SM + + G I + + + +
Sbjct: 76 KKNSSMVLMAQEVAENRADACISAGNTGALMTAGLFIVGRIKGIDRPALAPTLPTVSGDG 135
Query: 573 LNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLVDTHINENPNAEELSEITILAAKKMFSL 632
+D K + + + +P L+ T +
Sbjct: 136 FLLLDVGANVDAKPEHLVQYAIMGSV----YSQQVRGVTSPRVGLLNVGTEDKKGNELTK 191
Query: 633 GLKPRVALLSNSNFGSNNNISAHKMRTALKLIQKQMPELEIDGEMNGNYALNNELLHKQI 692
+ +N NF N A ++ + G+ +++ +
Sbjct: 192 QTFQILKETANINFIGNVEARDLLDDVADVVVTDGFTGNVTLKTLEGSALSIFKMMRDVM 251
Query: 693 PNSKLTGDANLLVLPNIESANIAYNLLKITSGNGVAIGPILLGCSKPIHILTSSATVRRI 752
++ + A ++ P ++ + G L G P+ S+ +
Sbjct: 252 TSTLTSKLAAAVLKPKLKEMKMKMEYSNYG-------GASLFGLKAPVIKAHGSSDSNAV 304
Query: 753 VNMTALCV 760
Sbjct: 305 FRAIRQAR 312
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 194
Score = 33.0 bits (74), Expect = 0.078
Identities = 14/170 (8%), Positives = 39/170 (22%), Gaps = 9/170 (5%)
Query: 486 KILEQHIKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCN 545
+ + R + D ++ +
Sbjct: 28 EDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPAGLERAIRLALNDAGTGPEDVDVVFA 87
Query: 546 TLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIGKKNKTNIYAAMSNLILMDRQLMLV 605
G + A + + G + + G+ + ++ R+ ++
Sbjct: 88 DGAGVPELDAAEARAIGR-VFGREGVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIA 146
Query: 606 DTHINENPNAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAH 655
T + E ++ + + PR AL+ N +
Sbjct: 147 PTAGVTSVPREYGIDLVLGEPRST-----APRTALVLARGRWGFN---SA 188
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase
PdxA {Escherichia coli [TaxId: 562]}
Length = 329
Score = 32.9 bits (74), Expect = 0.12
Identities = 13/125 (10%), Positives = 33/125 (26%), Gaps = 12/125 (9%)
Query: 449 KNIKRIIYSEGEE-----EKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGI 503
+R++ + GE + +++ Q E ++ +L L L +
Sbjct: 2 VKTQRVVITPGEPAGIGPDLVVQLAQ---REWPVELVVCADATLLTNRAAMLGLPLT--- 55
Query: 504 HFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCNTLIGAMAIHKGNADGMIC 563
P+ Q + L + + + G +G
Sbjct: 56 -LRPYSPNSPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFA 114
Query: 564 GILGS 568
++
Sbjct: 115 ALITG 119
>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
olivochromogenes [TaxId: 1963]}
Length = 386
Score = 32.6 bits (74), Expect = 0.18
Identities = 30/213 (14%), Positives = 56/213 (26%), Gaps = 38/213 (17%)
Query: 385 IIPKPFDPRLMIKIAPAVAIAAEKSGVATKPIKDIEIYTNHLQKFVYRSSAFMNPIFQIA 444
+IP A + +G + TN V++ F +
Sbjct: 57 LIPFGSSDTERESHIKRFRQALDATG-----MTVPMATTNLFTHPVFKDGGFTANDRDVR 111
Query: 445 KKARKNIKRIIYSEGEEEKILRAIQVVI-------------DENLAFPILIGRTKILEQH 491
+ A + R I + L A V D +A + +L ++
Sbjct: 112 RYALRKTIRNI----DLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEY 167
Query: 492 IKKLRLRIKPGIHFEIIDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCN------ 545
+ I+ I + +P + IE+ + ++ N
Sbjct: 168 VTSQGYDIRFAIEPKPNEPRGDILLPTVGHAL-------AFIERLERPELYGVNPEVGHE 220
Query: 546 TLIGAMAIHKGNADGMICGILGSTKLHLNYIDQ 578
+ G H A + G L LN
Sbjct: 221 QMAGLNFPHGI-AQALWAGKLFHI--DLNGQSG 250
>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 202
Score = 30.6 bits (69), Expect = 0.52
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 442 QIAKKARKNIKRIIYSEGEEEKILRAI---QVVIDENLAFPILIGRTKILEQHIKKLRLR 498
+ +K +IY E + +++R V + P + + ++ + +L
Sbjct: 60 LVRDTVQKFKSYLIYVESNDLRVIRYSIEKGVDA---IISPWVNRKDPGIDHVL--AKLM 114
Query: 499 IKPGIHFEI 507
+K +
Sbjct: 115 VKKNVALGF 123
>d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 159
Score = 27.1 bits (59), Expect = 6.1
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 18/112 (16%)
Query: 545 NTLIGAMAIHKGNADGMICGILGSTKLHLNYIDQIIG-KKNKTNIYAAMSNLILMDRQLM 603
+AI + D ++ STK + ++ G + + A +I L
Sbjct: 59 GDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLE 118
Query: 604 LVDTHINENPNAEELSEITILAAKKMFSLGLKPRVALLSNSNFGSNNNISAH 655
D ++ + E K AL ++ FG +N A
Sbjct: 119 DPDPELDLDFVPEPREA--------------KVDYALSNSFAFGGHN---AV 153
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 27.1 bits (59), Expect = 6.4
Identities = 13/138 (9%), Positives = 40/138 (28%), Gaps = 13/138 (9%)
Query: 448 RKNIKRIIYSEGEEEKILRAIQVVIDENLAFPILIGRTKILEQHIKKLRLRIKPGIHFEI 507
RK ++ ++ ++ ++ + G+ I+ I++
Sbjct: 2 RKEVQTMLVPMDRVNEVYEFVRQEVMRG-------GQAFIVYPLIEESDKLNVKSAVEMY 54
Query: 508 IDPDFNKQYKDYWKTYLSMTNRKGMIEQYAQLKMRKCN----TLIGAMAIHKGNADGMIC 563
+ +++ + + + T + + I A+ M+
Sbjct: 55 EYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV- 113
Query: 564 GILGSTKLHLNYIDQIIG 581
I + L + Q+ G
Sbjct: 114 -IENPERFGLAQLHQLRG 130
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 27.4 bits (60), Expect = 8.3
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 411 VATKPIKDIEIYTNH-LQKFVYRSSAFMNP-IFQIAKKARKNIKR 453
+A P + + IYT+ + K+ + + P +F +A A +N+
Sbjct: 73 IAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVT 117
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 27.4 bits (60), Expect = 8.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 411 VATKPIKDIEIYTNH-LQKFVYRSSAFMNP-IFQIAKKARKNIKR 453
VA P K I IYT + F R + P IF I+ A +++
Sbjct: 77 VAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLD 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,807,978
Number of extensions: 138182
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 32
Length of query: 766
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 674
Effective length of database: 1,144,436
Effective search space: 771349864
Effective search space used: 771349864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)