Query psy14496
Match_columns 561
No_of_seqs 358 out of 3604
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 21:16:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415|consensus 100.0 2E-113 4E-118 813.0 41.0 545 14-561 68-621 (621)
2 PRK10015 oxidoreductase; Provi 100.0 5.4E-42 1.2E-46 355.1 38.0 374 21-423 4-393 (429)
3 COG0644 FixC Dehydrogenases (f 100.0 1.5E-40 3.3E-45 342.1 35.9 339 20-405 1-340 (396)
4 PRK10157 putative oxidoreducta 100.0 6.3E-40 1.4E-44 340.2 35.7 374 21-424 4-393 (428)
5 PLN00093 geranylgeranyl diphos 100.0 1.5E-30 3.2E-35 270.0 35.0 343 16-405 33-384 (450)
6 COG0654 UbiH 2-polyprenyl-6-me 100.0 4.2E-30 9E-35 264.3 32.1 340 21-405 1-350 (387)
7 PRK07045 putative monooxygenas 100.0 6.2E-30 1.3E-34 263.9 31.9 342 20-405 3-358 (388)
8 PRK08013 oxidoreductase; Provi 100.0 8.5E-30 1.8E-34 263.5 29.8 339 22-405 3-357 (400)
9 TIGR02023 BchP-ChlP geranylger 100.0 2.3E-29 5E-34 259.1 32.5 328 23-404 1-334 (388)
10 TIGR02028 ChlP geranylgeranyl 100.0 3.1E-29 6.7E-34 258.0 33.2 337 23-405 1-345 (398)
11 PRK08244 hypothetical protein; 100.0 4.6E-29 1E-33 264.9 33.1 325 21-389 1-329 (493)
12 PRK06183 mhpA 3-(3-hydroxyphen 100.0 2.4E-29 5.2E-34 269.4 31.0 342 20-405 8-358 (538)
13 TIGR02032 GG-red-SF geranylger 100.0 5.1E-29 1.1E-33 247.6 30.5 294 23-366 1-295 (295)
14 PRK06617 2-octaprenyl-6-methox 100.0 1.8E-29 3.9E-34 258.7 27.3 330 23-406 2-339 (374)
15 PRK06185 hypothetical protein; 100.0 5.3E-29 1.1E-33 258.9 30.8 345 19-405 3-357 (407)
16 PF01494 FAD_binding_3: FAD bi 100.0 3.8E-30 8.3E-35 262.7 21.7 331 22-389 1-348 (356)
17 PF05187 ETF_QO: Electron tran 100.0 1.3E-32 2.9E-37 218.9 1.2 109 408-516 1-109 (110)
18 PRK07538 hypothetical protein; 100.0 1.3E-28 2.9E-33 255.8 31.5 337 23-400 1-361 (413)
19 PRK07364 2-octaprenyl-6-methox 100.0 1.1E-28 2.4E-33 257.3 30.5 356 8-405 4-369 (415)
20 PRK08243 4-hydroxybenzoate 3-m 100.0 1.2E-28 2.5E-33 254.5 29.1 343 21-405 1-350 (392)
21 PRK08163 salicylate hydroxylas 100.0 1.2E-28 2.6E-33 255.3 29.3 343 20-406 2-357 (396)
22 PRK05714 2-octaprenyl-3-methyl 100.0 9.2E-29 2E-33 256.7 27.6 340 21-406 1-361 (405)
23 PRK05868 hypothetical protein; 100.0 2E-28 4.2E-33 250.2 29.5 339 23-406 2-353 (372)
24 PRK08773 2-octaprenyl-3-methyl 100.0 3.8E-28 8.1E-33 251.0 31.4 325 20-389 4-342 (392)
25 TIGR01988 Ubi-OHases Ubiquinon 100.0 3.1E-28 6.8E-33 251.5 30.6 339 24-405 1-351 (385)
26 PRK06753 hypothetical protein; 100.0 2E-28 4.2E-33 251.7 28.7 333 23-406 1-339 (373)
27 PRK08294 phenol 2-monooxygenas 100.0 7.7E-28 1.7E-32 259.8 33.9 355 21-405 31-412 (634)
28 PRK08132 FAD-dependent oxidore 100.0 6.7E-28 1.4E-32 259.0 33.1 344 18-403 19-369 (547)
29 PRK09126 hypothetical protein; 100.0 1.9E-28 4E-33 253.6 27.3 341 20-405 1-355 (392)
30 PRK06184 hypothetical protein; 100.0 6E-28 1.3E-32 256.8 31.5 339 22-401 3-348 (502)
31 TIGR01984 UbiH 2-polyprenyl-6- 100.0 4.4E-28 9.6E-33 249.9 29.6 337 24-405 1-348 (382)
32 TIGR01989 COQ6 Ubiquinone bios 100.0 5.2E-28 1.1E-32 252.6 30.3 342 23-405 1-408 (437)
33 PRK07333 2-octaprenyl-6-methox 100.0 8E-28 1.7E-32 249.9 31.0 343 22-405 1-355 (403)
34 PRK07588 hypothetical protein; 100.0 7.6E-28 1.6E-32 248.7 30.4 338 23-406 1-350 (391)
35 PRK08850 2-octaprenyl-6-methox 100.0 1E-27 2.2E-32 248.7 31.1 338 22-405 4-357 (405)
36 PRK07190 hypothetical protein; 100.0 1.6E-27 3.5E-32 250.4 29.9 329 20-401 3-343 (487)
37 PRK06475 salicylate hydroxylas 100.0 3.5E-27 7.5E-32 244.1 30.9 333 22-398 2-353 (400)
38 PRK06834 hypothetical protein; 100.0 1E-26 2.3E-31 244.5 33.8 317 21-389 2-322 (488)
39 PRK06996 hypothetical protein; 100.0 6.9E-27 1.5E-31 241.6 31.6 336 18-405 7-360 (398)
40 PRK06126 hypothetical protein; 100.0 4.2E-27 9.2E-32 253.1 30.4 329 18-389 3-360 (545)
41 PRK07608 ubiquinone biosynthes 100.0 6.9E-27 1.5E-31 241.6 30.3 340 20-405 3-354 (388)
42 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 4.3E-27 9.3E-32 242.0 28.5 342 21-405 1-350 (390)
43 PRK07494 2-octaprenyl-6-methox 100.0 1.3E-27 2.8E-32 246.8 23.9 339 19-405 4-352 (388)
44 PTZ00367 squalene epoxidase; P 100.0 7.5E-27 1.6E-31 247.0 29.9 368 18-425 29-437 (567)
45 PRK06847 hypothetical protein; 100.0 1E-26 2.2E-31 239.2 29.7 335 22-405 4-351 (375)
46 TIGR03219 salicylate_mono sali 100.0 6.6E-27 1.4E-31 243.3 28.5 341 23-405 1-373 (414)
47 PRK08020 ubiF 2-octaprenyl-3-m 100.0 2.3E-26 5E-31 237.8 31.9 338 20-405 3-356 (391)
48 PRK08849 2-octaprenyl-3-methyl 100.0 1.1E-26 2.5E-31 238.9 28.9 333 22-405 3-349 (384)
49 PLN02985 squalene monooxygenas 100.0 8.6E-26 1.9E-30 238.0 34.2 344 18-405 39-401 (514)
50 PRK07236 hypothetical protein; 100.0 1.1E-26 2.3E-31 239.5 26.5 318 20-389 4-360 (386)
51 PRK05732 2-octaprenyl-6-methox 100.0 4.7E-26 1E-30 236.0 30.9 343 20-406 1-358 (395)
52 PLN02927 antheraxanthin epoxid 99.9 1.7E-25 3.8E-30 237.4 29.4 347 19-405 78-446 (668)
53 PRK11445 putative oxidoreducta 99.9 2.8E-24 6E-29 218.1 27.5 309 23-389 2-316 (351)
54 KOG2614|consensus 99.9 1.3E-24 2.9E-29 210.6 12.7 42 330-371 286-327 (420)
55 PLN02697 lycopene epsilon cycl 99.9 2E-22 4.3E-27 211.1 29.5 312 20-389 106-439 (529)
56 TIGR01790 carotene-cycl lycope 99.9 5.1E-22 1.1E-26 205.2 31.7 306 24-389 1-318 (388)
57 COG2440 FixX Ferredoxin-like p 99.9 2.1E-25 4.6E-30 169.1 3.5 80 473-560 18-98 (99)
58 PRK08255 salicylyl-CoA 5-hydro 99.9 2.5E-23 5.5E-28 230.0 19.9 324 24-405 2-339 (765)
59 PLN02463 lycopene beta cyclase 99.9 3.3E-21 7.1E-26 199.1 29.4 296 20-375 26-337 (447)
60 PF04820 Trp_halogenase: Trypt 99.9 2.1E-22 4.5E-27 209.4 19.6 222 124-389 147-370 (454)
61 KOG1298|consensus 99.8 4.6E-19 1E-23 168.8 22.6 304 18-368 41-362 (509)
62 PRK15449 ferredoxin-like prote 99.8 1.3E-21 2.8E-26 152.0 2.6 78 473-560 15-94 (95)
63 TIGR01789 lycopene_cycl lycope 99.8 3.7E-18 8.1E-23 173.5 23.7 281 24-367 1-286 (370)
64 PF05834 Lycopene_cycl: Lycope 99.8 3.2E-17 6.9E-22 167.5 26.7 281 24-368 1-290 (374)
65 KOG3855|consensus 99.8 5E-17 1.1E-21 156.9 19.1 334 20-388 34-429 (481)
66 PRK04176 ribulose-1,5-biphosph 99.7 1E-16 2.3E-21 153.9 17.1 163 18-214 21-183 (257)
67 TIGR00292 thiazole biosynthesi 99.7 3.9E-16 8.5E-21 149.4 17.5 166 18-217 17-183 (254)
68 COG1635 THI4 Ribulose 1,5-bisp 99.7 6.3E-16 1.4E-20 137.2 14.8 160 18-212 26-186 (262)
69 PF01946 Thi4: Thi4 family; PD 99.7 1.2E-16 2.6E-21 143.1 10.4 162 19-214 14-175 (230)
70 PRK12771 putative glutamate sy 99.7 1.1E-16 2.4E-21 172.4 11.0 61 485-548 501-561 (564)
71 PRK09853 putative selenate red 99.7 2.1E-15 4.7E-20 166.1 19.2 41 20-66 537-577 (1019)
72 TIGR03315 Se_ygfK putative sel 99.6 4.9E-15 1.1E-19 164.2 17.4 40 21-66 536-575 (1012)
73 COG2081 Predicted flavoprotein 99.6 2.9E-14 6.4E-19 138.9 13.4 155 20-205 1-168 (408)
74 PRK00711 D-amino acid dehydrog 99.5 3.8E-12 8.2E-17 132.9 23.4 74 125-218 195-268 (416)
75 PF01266 DAO: FAD dependent ox 99.5 8.8E-12 1.9E-16 127.2 25.1 75 123-217 139-213 (358)
76 TIGR01373 soxB sarcosine oxida 99.5 4.3E-11 9.4E-16 124.5 28.0 64 126-205 178-241 (407)
77 COG1148 HdrA Heterodisulfide r 99.4 1.2E-11 2.5E-16 122.2 18.8 50 485-548 558-607 (622)
78 PRK12409 D-amino acid dehydrog 99.4 4.9E-11 1.1E-15 124.2 24.2 67 127-205 193-259 (410)
79 PF03486 HI0933_like: HI0933-l 99.4 4.6E-13 1E-17 136.6 8.0 153 23-205 1-167 (409)
80 TIGR03329 Phn_aa_oxid putative 99.4 2.5E-11 5.4E-16 127.9 21.1 165 18-205 20-238 (460)
81 TIGR01377 soxA_mon sarcosine o 99.4 9.9E-11 2.1E-15 120.7 25.2 65 123-205 137-201 (380)
82 PRK01747 mnmC bifunctional tRN 99.4 1.9E-11 4.2E-16 134.4 20.9 63 125-205 402-464 (662)
83 PRK11259 solA N-methyltryptoph 99.4 6.8E-11 1.5E-15 121.7 22.8 62 126-205 144-205 (376)
84 PLN02661 Putative thiazole syn 99.3 2.1E-11 4.6E-16 119.8 15.2 156 19-208 89-248 (357)
85 PRK12814 putative NADPH-depend 99.3 3.9E-11 8.5E-16 131.1 18.4 44 21-70 192-235 (652)
86 PRK11101 glpA sn-glycerol-3-ph 99.3 8.7E-10 1.9E-14 118.2 27.7 69 126-205 144-212 (546)
87 COG0665 DadA Glycine/D-amino a 99.3 4.2E-10 9.2E-15 116.3 23.9 66 122-205 147-213 (387)
88 COG0579 Predicted dehydrogenas 99.3 5.9E-11 1.3E-15 120.0 16.8 176 20-218 1-222 (429)
89 PRK11728 hydroxyglutarate oxid 99.3 2E-10 4.4E-15 118.8 20.6 163 21-205 1-205 (393)
90 PF12831 FAD_oxidored: FAD dep 99.2 2.9E-12 6.2E-17 133.4 3.7 142 24-203 1-149 (428)
91 TIGR03364 HpnW_proposed FAD de 99.2 4.6E-10 9.9E-15 115.0 19.4 155 23-205 1-198 (365)
92 PRK05192 tRNA uridine 5-carbox 99.2 4.8E-11 1E-15 125.6 12.1 149 20-204 2-157 (618)
93 PRK12266 glpD glycerol-3-phosp 99.2 9.7E-09 2.1E-13 109.3 29.4 67 127-205 151-217 (508)
94 PF13738 Pyr_redox_3: Pyridine 99.2 3.9E-11 8.4E-16 112.1 9.4 138 26-205 1-139 (203)
95 PLN02464 glycerol-3-phosphate 99.2 1.2E-08 2.5E-13 110.9 28.8 71 125-205 226-297 (627)
96 PRK13369 glycerol-3-phosphate 99.2 1.5E-08 3.3E-13 107.9 29.2 67 126-205 150-216 (502)
97 PRK07804 L-aspartate oxidase; 99.2 4.2E-10 9.1E-15 120.5 16.8 174 18-206 12-212 (541)
98 COG0578 GlpA Glycerol-3-phosph 99.2 1.1E-08 2.3E-13 105.9 26.1 69 125-205 158-226 (532)
99 PRK07121 hypothetical protein; 99.2 3.7E-10 8E-15 120.1 15.7 169 18-205 16-240 (492)
100 PTZ00383 malate:quinone oxidor 99.2 6.7E-10 1.4E-14 116.5 17.2 71 126-216 206-282 (497)
101 TIGR01813 flavo_cyto_c flavocy 99.2 3.5E-10 7.5E-15 118.8 15.3 165 24-206 1-194 (439)
102 PF01134 GIDA: Glucose inhibit 99.2 1.5E-10 3.3E-15 115.7 11.4 144 24-202 1-150 (392)
103 PF08491 SE: Squalene epoxidas 99.2 1.7E-09 3.6E-14 102.2 17.5 155 193-369 2-167 (276)
104 PRK06481 fumarate reductase fl 99.2 6.2E-10 1.3E-14 118.4 16.3 167 20-206 59-253 (506)
105 TIGR01320 mal_quin_oxido malat 99.2 1.4E-09 3E-14 114.4 18.1 81 123-217 170-250 (483)
106 PRK07573 sdhA succinate dehydr 99.1 5E-10 1.1E-14 121.8 15.0 169 19-206 32-234 (640)
107 PRK06452 sdhA succinate dehydr 99.1 4.9E-10 1.1E-14 120.6 14.5 170 19-206 2-200 (566)
108 PRK08274 tricarballylate dehyd 99.1 5.8E-10 1.3E-14 118.0 14.7 169 21-208 3-196 (466)
109 PLN00128 Succinate dehydrogena 99.1 8.7E-10 1.9E-14 119.5 16.0 169 21-206 49-252 (635)
110 PTZ00139 Succinate dehydrogena 99.1 8.6E-10 1.9E-14 119.6 15.9 170 19-205 26-230 (617)
111 PRK08275 putative oxidoreducta 99.1 4.7E-10 1E-14 120.7 13.2 174 17-206 4-202 (554)
112 PRK08958 sdhA succinate dehydr 99.1 8.8E-10 1.9E-14 118.9 15.2 169 21-206 6-208 (588)
113 PRK07057 sdhA succinate dehydr 99.1 6.1E-10 1.3E-14 120.4 13.6 172 18-206 8-213 (591)
114 PLN02172 flavin-containing mon 99.1 1.4E-09 2.9E-14 113.7 14.9 161 21-205 9-174 (461)
115 PF14697 Fer4_21: 4Fe-4S diclu 99.1 2.5E-11 5.5E-16 87.3 1.4 57 484-547 2-59 (59)
116 PRK09078 sdhA succinate dehydr 99.1 7E-10 1.5E-14 120.1 13.1 171 18-205 8-213 (598)
117 PRK05257 malate:quinone oxidor 99.1 4.3E-09 9.3E-14 110.9 18.5 81 123-217 175-256 (494)
118 PF00890 FAD_binding_2: FAD bi 99.1 6.7E-10 1.4E-14 116.0 11.9 169 24-210 1-210 (417)
119 PRK06263 sdhA succinate dehydr 99.1 1.6E-09 3.6E-14 116.3 14.8 167 18-205 3-198 (543)
120 TIGR02730 carot_isom carotene 99.1 2.7E-08 6E-13 105.9 24.0 61 131-207 229-289 (493)
121 PRK06069 sdhA succinate dehydr 99.1 1.9E-09 4E-14 116.7 15.1 171 18-206 1-202 (577)
122 PRK09231 fumarate reductase fl 99.1 9.3E-10 2E-14 118.7 12.4 172 19-206 1-198 (582)
123 PRK12839 hypothetical protein; 99.1 2.5E-09 5.5E-14 114.9 15.5 67 129-206 212-278 (572)
124 KOG2820|consensus 99.1 1.9E-08 4.1E-13 95.7 19.3 165 19-204 4-212 (399)
125 TIGR01176 fum_red_Fp fumarate 99.1 1.5E-09 3.3E-14 116.8 13.5 169 21-206 2-197 (580)
126 PRK06854 adenylylsulfate reduc 99.0 3E-09 6.4E-14 115.3 15.5 169 18-205 7-196 (608)
127 PRK05945 sdhA succinate dehydr 99.0 1.1E-09 2.4E-14 118.2 12.1 170 21-206 2-199 (575)
128 PRK12845 3-ketosteroid-delta-1 99.0 3.5E-09 7.7E-14 113.5 15.8 62 132-206 218-280 (564)
129 PRK13339 malate:quinone oxidor 99.0 1E-08 2.2E-13 107.2 18.7 82 123-218 176-258 (497)
130 TIGR01292 TRX_reduct thioredox 99.0 2.5E-09 5.4E-14 106.4 13.8 113 23-205 1-113 (300)
131 KOG1399|consensus 99.0 2.9E-09 6.3E-14 109.3 14.1 145 20-203 4-152 (448)
132 COG2509 Uncharacterized FAD-de 99.0 1.2E-07 2.7E-12 94.1 24.7 82 131-230 173-255 (486)
133 COG1144 Pyruvate:ferredoxin ox 99.0 1E-10 2.2E-15 88.3 2.4 56 484-549 31-87 (91)
134 PRK07803 sdhA succinate dehydr 99.0 2.7E-09 5.8E-14 116.1 14.6 170 18-205 4-214 (626)
135 PRK08641 sdhA succinate dehydr 99.0 4.2E-09 9.1E-14 113.8 15.9 169 21-206 2-202 (589)
136 COG0492 TrxB Thioredoxin reduc 99.0 2.5E-09 5.4E-14 104.8 12.9 114 21-205 2-116 (305)
137 PRK06175 L-aspartate oxidase; 99.0 3.4E-09 7.3E-14 110.5 14.6 164 21-205 3-190 (433)
138 TIGR00136 gidA glucose-inhibit 99.0 1.7E-09 3.7E-14 113.8 12.2 147 23-204 1-154 (617)
139 PRK08401 L-aspartate oxidase; 99.0 2.7E-09 5.9E-14 112.4 13.7 156 23-206 2-177 (466)
140 PF00743 FMO-like: Flavin-bind 99.0 3.1E-09 6.6E-14 112.6 14.0 145 23-205 2-151 (531)
141 TIGR01812 sdhA_frdA_Gneg succi 99.0 3.4E-09 7.4E-14 114.7 14.7 165 24-206 1-193 (566)
142 PRK12834 putative FAD-binding 99.0 6.8E-09 1.5E-13 111.7 16.6 180 20-207 2-230 (549)
143 PRK12835 3-ketosteroid-delta-1 99.0 5.7E-09 1.2E-13 112.6 15.9 62 133-206 215-277 (584)
144 TIGR00275 flavoprotein, HI0933 99.0 2.4E-09 5.2E-14 110.5 12.3 147 26-204 1-160 (400)
145 PLN02815 L-aspartate oxidase 99.0 5E-09 1.1E-13 112.7 14.9 171 18-206 25-224 (594)
146 TIGR00551 nadB L-aspartate oxi 99.0 4.4E-09 9.6E-14 111.5 14.3 164 22-206 2-191 (488)
147 TIGR02734 crtI_fam phytoene de 99.0 1.4E-07 3E-12 100.9 25.9 60 131-206 219-278 (502)
148 COG2072 TrkA Predicted flavopr 99.0 4.4E-09 9.5E-14 109.5 13.6 138 19-205 5-145 (443)
149 PRK12837 3-ketosteroid-delta-1 99.0 9.8E-09 2.1E-13 109.5 16.4 41 20-67 5-45 (513)
150 PRK06134 putative FAD-binding 99.0 5.7E-09 1.2E-13 112.8 14.5 64 130-206 216-280 (581)
151 PLN02612 phytoene desaturase 99.0 1.9E-07 4.2E-12 100.5 25.7 56 132-202 309-364 (567)
152 PRK12842 putative succinate de 99.0 7.3E-09 1.6E-13 112.0 14.8 62 132-206 215-277 (574)
153 PRK07233 hypothetical protein; 99.0 2.6E-07 5.7E-12 97.0 25.9 38 24-67 1-38 (434)
154 PRK15317 alkyl hydroperoxide r 99.0 6.4E-09 1.4E-13 111.1 13.7 115 20-205 209-323 (517)
155 PRK12843 putative FAD-binding 98.9 1.4E-08 3E-13 109.8 15.8 69 132-214 222-291 (578)
156 PRK08626 fumarate reductase fl 98.9 4.1E-09 8.9E-14 114.9 11.5 65 131-206 158-222 (657)
157 PRK08205 sdhA succinate dehydr 98.9 6.2E-09 1.3E-13 112.6 12.6 66 131-206 140-208 (583)
158 COG1143 NuoI Formate hydrogenl 98.9 3.7E-10 8E-15 99.4 2.3 57 485-547 52-114 (172)
159 PRK13977 myosin-cross-reactive 98.9 1.7E-08 3.6E-13 105.6 14.4 53 13-67 13-65 (576)
160 PRK12844 3-ketosteroid-delta-1 98.9 1.6E-08 3.4E-13 108.7 14.6 63 131-206 208-271 (557)
161 COG1142 HycB Fe-S-cluster-cont 98.9 5.4E-10 1.2E-14 96.7 2.7 54 488-550 51-104 (165)
162 TIGR01424 gluta_reduc_2 glutat 98.9 8.2E-09 1.8E-13 108.4 11.5 50 22-78 2-51 (446)
163 TIGR03140 AhpF alkyl hydropero 98.9 1.1E-08 2.3E-13 109.4 12.4 114 20-204 210-323 (515)
164 PRK06416 dihydrolipoamide dehy 98.9 1.7E-08 3.8E-13 106.7 14.0 41 21-68 3-43 (462)
165 TIGR03143 AhpF_homolog putativ 98.9 1.5E-08 3.2E-13 109.1 13.4 112 22-205 4-115 (555)
166 PF06039 Mqo: Malate:quinone o 98.9 5.8E-08 1.3E-12 97.3 16.3 81 125-219 175-256 (488)
167 KOG2844|consensus 98.9 7.4E-08 1.6E-12 99.2 17.0 82 121-222 177-258 (856)
168 PRK07395 L-aspartate oxidase; 98.9 1.9E-08 4.2E-13 107.7 13.4 167 19-205 6-198 (553)
169 PRK12779 putative bifunctional 98.9 5.9E-09 1.3E-13 117.5 9.8 41 21-67 305-345 (944)
170 PRK05249 soluble pyridine nucl 98.9 2.4E-08 5.2E-13 105.6 13.6 43 20-68 3-45 (461)
171 TIGR01811 sdhA_Bsu succinate d 98.9 2.3E-08 4.9E-13 108.3 13.6 165 25-206 1-198 (603)
172 TIGR02731 phytoene_desat phyto 98.8 9.2E-07 2E-11 93.4 25.0 64 131-204 213-276 (453)
173 PRK09077 L-aspartate oxidase; 98.8 3E-08 6.5E-13 106.3 13.7 169 20-206 6-209 (536)
174 PRK06467 dihydrolipoamide dehy 98.8 3.4E-08 7.3E-13 104.4 13.8 51 21-77 3-53 (471)
175 PTZ00306 NADH-dependent fumara 98.8 4.7E-08 1E-12 113.5 16.0 173 19-206 406-622 (1167)
176 TIGR02061 aprA adenosine phosp 98.8 2.1E-08 4.6E-13 107.9 12.3 165 24-205 1-192 (614)
177 TIGR00562 proto_IX_ox protopor 98.8 1.3E-06 2.9E-11 92.5 25.8 42 23-68 3-46 (462)
178 PRK12416 protoporphyrinogen ox 98.8 8.7E-07 1.9E-11 93.9 24.3 45 24-68 3-47 (463)
179 PRK08071 L-aspartate oxidase; 98.8 3.3E-08 7.2E-13 105.2 13.5 164 21-205 2-191 (510)
180 KOG2853|consensus 98.8 5.6E-07 1.2E-11 85.7 20.0 77 127-205 239-321 (509)
181 TIGR01421 gluta_reduc_1 glutat 98.8 3.2E-08 7E-13 103.9 13.2 41 22-69 2-42 (450)
182 COG1146 Ferredoxin [Energy pro 98.8 2.9E-09 6.3E-14 79.7 3.8 62 484-552 4-65 (68)
183 PRK14727 putative mercuric red 98.8 5.8E-08 1.3E-12 102.9 14.9 63 8-76 2-64 (479)
184 PRK07843 3-ketosteroid-delta-1 98.8 7.1E-08 1.5E-12 103.8 15.6 62 132-206 209-271 (557)
185 PRK05976 dihydrolipoamide dehy 98.8 5.6E-08 1.2E-12 103.0 14.4 50 21-77 3-52 (472)
186 TIGR02732 zeta_caro_desat caro 98.8 1.1E-06 2.4E-11 92.8 22.8 38 24-67 1-38 (474)
187 COG3380 Predicted NAD/FAD-depe 98.8 2.3E-08 4.9E-13 92.4 8.5 39 23-67 2-40 (331)
188 PF13247 Fer4_11: 4Fe-4S diclu 98.8 2.1E-09 4.7E-14 85.7 1.5 59 487-552 6-64 (98)
189 PRK06370 mercuric reductase; V 98.8 7.3E-08 1.6E-12 101.9 13.4 51 21-78 4-54 (463)
190 PRK06115 dihydrolipoamide dehy 98.8 6.3E-08 1.4E-12 102.2 12.9 51 21-77 2-52 (466)
191 KOG2852|consensus 98.8 3.5E-07 7.7E-12 85.2 15.7 169 19-205 7-209 (380)
192 TIGR02485 CobZ_N-term precorri 98.8 1.2E-07 2.5E-12 99.4 14.5 159 27-208 1-187 (432)
193 PTZ00058 glutathione reductase 98.8 8.6E-08 1.9E-12 102.4 13.5 53 18-77 44-96 (561)
194 PRK06116 glutathione reductase 98.8 6.1E-08 1.3E-12 102.1 12.4 39 22-67 4-42 (450)
195 PRK07251 pyridine nucleotide-d 98.7 7.9E-08 1.7E-12 100.9 12.7 40 21-66 2-42 (438)
196 PRK07512 L-aspartate oxidase; 98.7 3.6E-08 7.9E-13 105.0 10.1 166 18-205 5-198 (513)
197 PRK14694 putative mercuric red 98.7 1.7E-07 3.6E-12 99.2 15.0 51 19-76 3-53 (468)
198 PRK05335 tRNA (uracil-5-)-meth 98.7 6E-08 1.3E-12 98.1 10.9 37 22-64 2-38 (436)
199 PRK08010 pyridine nucleotide-d 98.7 8E-08 1.7E-12 101.0 12.3 41 21-67 2-43 (441)
200 PRK12831 putative oxidoreducta 98.7 2.7E-08 5.9E-13 104.6 8.7 42 19-66 137-178 (464)
201 PRK10262 thioredoxin reductase 98.7 1.3E-07 2.9E-12 95.0 12.8 115 20-205 4-118 (321)
202 PRK06327 dihydrolipoamide dehy 98.7 1.4E-07 3E-12 99.9 13.4 33 21-59 3-35 (475)
203 PF13454 NAD_binding_9: FAD-NA 98.7 1.3E-07 2.8E-12 84.0 11.0 36 26-62 1-36 (156)
204 PRK09897 hypothetical protein; 98.7 2E-07 4.3E-12 98.5 14.1 40 23-66 2-41 (534)
205 PLN02507 glutathione reductase 98.7 1.8E-07 4E-12 99.3 13.8 33 21-59 24-56 (499)
206 PF13450 NAD_binding_8: NAD(P) 98.7 2.1E-08 4.6E-13 74.9 4.5 35 27-67 1-35 (68)
207 PF00070 Pyr_redox: Pyridine n 98.6 3.6E-07 7.8E-12 71.1 10.3 78 24-171 1-78 (80)
208 PF07992 Pyr_redox_2: Pyridine 98.6 4.4E-08 9.5E-13 91.2 5.9 33 24-62 1-33 (201)
209 PRK13800 putative oxidoreducta 98.6 1.6E-07 3.4E-12 106.7 11.5 170 19-206 10-207 (897)
210 COG1232 HemY Protoporphyrinoge 98.6 8.9E-06 1.9E-10 83.4 22.9 41 24-68 2-42 (444)
211 COG1053 SdhA Succinate dehydro 98.6 2E-07 4.3E-12 99.0 11.2 171 19-205 3-203 (562)
212 PRK12775 putative trifunctiona 98.6 7.8E-08 1.7E-12 109.5 8.3 40 21-66 429-468 (1006)
213 PRK12778 putative bifunctional 98.6 9.4E-08 2E-12 106.8 8.7 41 20-66 429-469 (752)
214 COG1249 Lpd Pyruvate/2-oxoglut 98.6 2.3E-07 4.9E-12 95.8 10.8 54 20-79 2-55 (454)
215 PRK13748 putative mercuric red 98.6 6E-07 1.3E-11 97.5 14.5 49 21-76 97-145 (561)
216 PRK12769 putative oxidoreducta 98.6 1.1E-07 2.3E-12 104.6 8.6 40 21-66 326-365 (654)
217 KOG2404|consensus 98.6 2.7E-07 5.9E-12 87.1 9.7 172 24-218 11-220 (477)
218 TIGR01316 gltA glutamate synth 98.6 1.4E-07 3E-12 99.1 8.6 41 20-66 131-171 (449)
219 PLN02546 glutathione reductase 98.6 2.3E-07 5E-12 99.2 10.4 33 21-59 78-110 (558)
220 TIGR01350 lipoamide_DH dihydro 98.6 3.1E-07 6.7E-12 97.2 11.1 41 22-69 1-41 (461)
221 PRK06292 dihydrolipoamide dehy 98.6 5.9E-07 1.3E-11 95.0 13.2 41 21-68 2-42 (460)
222 TIGR02053 MerA mercuric reduct 98.6 2.2E-07 4.8E-12 98.2 9.9 48 23-77 1-48 (463)
223 KOG3923|consensus 98.6 3.4E-06 7.3E-11 79.3 16.2 293 21-371 2-338 (342)
224 TIGR01372 soxA sarcosine oxida 98.6 8.1E-07 1.8E-11 101.9 15.0 40 21-66 162-201 (985)
225 PLN02852 ferredoxin-NADP+ redu 98.6 2.4E-07 5.2E-12 96.8 9.7 47 18-68 22-68 (491)
226 CHL00065 psaC photosystem I su 98.6 1.8E-08 3.9E-13 78.4 1.1 60 484-549 5-67 (81)
227 PRK11749 dihydropyrimidine deh 98.6 1.9E-07 4.1E-12 98.5 9.0 40 20-65 138-177 (457)
228 TIGR01318 gltD_gamma_fam gluta 98.5 2.1E-07 4.7E-12 98.0 8.9 40 21-66 140-179 (467)
229 PRK12810 gltD glutamate syntha 98.5 2.3E-07 5.1E-12 98.0 9.0 41 20-66 141-181 (471)
230 KOG3256|consensus 98.5 2.7E-08 5.8E-13 83.5 1.4 56 486-547 109-169 (212)
231 TIGR02936 fdxN_nitrog ferredox 98.5 3.3E-08 7.3E-13 79.0 1.8 59 484-548 17-90 (91)
232 PRK08348 NADH-plastoquinone ox 98.5 8.3E-08 1.8E-12 80.9 4.0 57 484-549 38-94 (120)
233 KOG2960|consensus 98.5 1.8E-07 4E-12 83.0 6.3 152 22-206 76-236 (328)
234 TIGR00137 gid_trmFO tRNA:m(5)U 98.5 5.3E-07 1.1E-11 92.0 10.6 37 23-65 1-37 (433)
235 PTZ00052 thioredoxin reductase 98.5 4.9E-07 1.1E-11 96.1 9.9 33 22-60 5-37 (499)
236 PF13187 Fer4_9: 4Fe-4S diclus 98.5 2.8E-08 6E-13 71.2 0.1 47 499-545 5-55 (55)
237 PF13434 K_oxygenase: L-lysine 98.5 1.9E-07 4.2E-12 93.7 6.0 153 22-203 2-158 (341)
238 COG0493 GltD NADPH-dependent g 98.5 3E-07 6.6E-12 95.0 7.5 76 21-155 122-197 (457)
239 PRK09624 porD pyuvate ferredox 98.5 6.8E-08 1.5E-12 78.8 2.1 55 484-548 47-101 (105)
240 PRK07818 dihydrolipoamide dehy 98.5 1.9E-06 4E-11 91.3 13.6 39 22-67 4-42 (466)
241 COG0437 HybA Fe-S-cluster-cont 98.5 1.3E-07 2.8E-12 85.2 3.8 55 488-549 67-121 (203)
242 KOG2665|consensus 98.4 9.4E-07 2E-11 83.4 9.3 170 20-206 46-259 (453)
243 PRK12809 putative oxidoreducta 98.4 5.4E-07 1.2E-11 98.7 9.0 40 21-66 309-348 (639)
244 TIGR02060 aprB adenosine phosp 98.4 8.6E-08 1.9E-12 81.1 2.1 57 485-549 5-66 (132)
245 PLN00071 photosystem I subunit 98.4 8.9E-08 1.9E-12 74.6 1.9 63 485-553 6-71 (81)
246 PRK09564 coenzyme A disulfide 98.4 1.5E-06 3.3E-11 91.5 11.8 36 24-63 2-37 (444)
247 TIGR03378 glycerol3P_GlpB glyc 98.4 3.6E-06 7.8E-11 85.6 13.9 62 130-205 262-324 (419)
248 TIGR02179 PorD_KorD 2-oxoacid: 98.4 2.2E-07 4.7E-12 71.9 3.9 55 484-548 21-75 (78)
249 PRK04965 NADH:flavorubredoxin 98.4 1.3E-06 2.8E-11 89.9 10.8 38 21-62 1-38 (377)
250 PRK09625 porD pyruvate flavodo 98.4 8E-08 1.7E-12 82.0 1.5 56 484-549 55-110 (133)
251 PTZ00363 rab-GDP dissociation 98.4 3.3E-06 7.2E-11 87.6 13.6 57 131-202 232-288 (443)
252 COG0445 GidA Flavin-dependent 98.4 4.5E-07 9.8E-12 92.1 6.9 145 22-203 4-157 (621)
253 PRK09626 oorD 2-oxoglutarate-a 98.4 1.8E-07 3.9E-12 76.4 3.4 62 481-548 9-73 (103)
254 KOG0029|consensus 98.4 3.2E-07 7E-12 96.1 5.8 45 18-68 11-55 (501)
255 PF12838 Fer4_7: 4Fe-4S diclus 98.4 3.3E-08 7.3E-13 69.7 -1.4 46 499-544 5-52 (52)
256 TIGR01317 GOGAT_sm_gam glutama 98.4 9.8E-07 2.1E-11 93.4 9.0 40 21-66 142-181 (485)
257 KOG1335|consensus 98.4 3.4E-06 7.4E-11 81.8 11.7 47 21-73 38-84 (506)
258 TIGR03048 PS_I_psaC photosyste 98.4 1.2E-07 2.7E-12 73.5 1.6 63 484-552 4-69 (80)
259 TIGR01660 narH nitrate reducta 98.4 2.8E-07 6E-12 91.8 4.3 61 483-550 176-236 (492)
260 TIGR01423 trypano_reduc trypan 98.4 2.1E-06 4.6E-11 90.7 11.3 53 21-79 2-63 (486)
261 PRK09623 vorD 2-ketoisovalerat 98.4 2.4E-07 5.2E-12 75.7 3.2 55 484-548 47-101 (105)
262 KOG0042|consensus 98.4 4.4E-07 9.6E-12 91.6 5.7 70 131-210 224-293 (680)
263 PF13237 Fer4_10: 4Fe-4S diclu 98.4 1.6E-07 3.4E-12 66.3 1.7 49 484-541 3-52 (52)
264 PRK07845 flavoprotein disulfid 98.4 4.5E-06 9.8E-11 88.2 13.6 38 23-67 2-39 (466)
265 TIGR01438 TGR thioredoxin and 98.4 5E-06 1.1E-10 88.1 13.9 33 22-60 2-34 (484)
266 COG1233 Phytoene dehydrogenase 98.4 3.8E-07 8.2E-12 96.6 5.4 42 20-67 1-42 (487)
267 PRK08222 hydrogenase 4 subunit 98.3 3.7E-07 8E-12 82.5 4.1 58 485-548 35-93 (181)
268 TIGR01944 rnfB electron transp 98.3 2.7E-07 5.9E-12 82.2 3.1 57 482-548 107-163 (165)
269 TIGR02462 pyranose_ox pyranose 98.3 6.9E-06 1.5E-10 86.9 13.9 38 23-66 1-38 (544)
270 TIGR03478 DMSO_red_II_bet DMSO 98.3 4E-07 8.7E-12 87.2 4.3 60 485-551 126-185 (321)
271 PRK06912 acoL dihydrolipoamide 98.3 2.5E-06 5.5E-11 90.0 10.7 48 24-78 2-49 (458)
272 COG1231 Monoamine oxidase [Ami 98.3 5.3E-06 1.1E-10 83.2 12.1 42 20-67 5-46 (450)
273 TIGR03197 MnmC_Cterm tRNA U-34 98.3 1.7E-05 3.6E-10 81.8 16.4 63 125-205 129-191 (381)
274 COG0029 NadB Aspartate oxidase 98.3 1.6E-06 3.5E-11 87.5 8.3 65 131-206 133-198 (518)
275 TIGR01582 FDH-beta formate deh 98.3 4.2E-07 9.1E-12 87.5 4.0 63 480-550 82-146 (283)
276 PRK02651 photosystem I subunit 98.3 2.4E-07 5.3E-12 72.2 1.9 59 485-549 6-67 (81)
277 PRK12387 formate hydrogenlyase 98.3 2.4E-07 5.3E-12 84.0 2.2 58 485-548 35-93 (180)
278 COG1245 Predicted ATPase, RNas 98.3 3.3E-07 7.1E-12 90.8 3.0 65 480-551 3-74 (591)
279 PRK12770 putative glutamate sy 98.3 2.8E-06 6E-11 86.5 9.9 39 22-66 18-56 (352)
280 PRK13512 coenzyme A disulfide 98.3 5E-06 1.1E-10 87.2 12.0 37 24-64 3-39 (438)
281 PRK09754 phenylpropionate diox 98.3 7.2E-06 1.6E-10 84.9 13.0 38 22-63 3-40 (396)
282 TIGR02352 thiamin_ThiO glycine 98.3 4.1E-05 8.9E-10 77.4 18.0 66 123-205 129-194 (337)
283 PRK06273 ferredoxin; Provision 98.3 2.8E-07 6E-12 81.4 1.7 57 485-547 46-110 (165)
284 PRK07208 hypothetical protein; 98.3 8.7E-07 1.9E-11 94.3 5.9 42 20-67 2-43 (479)
285 PF00037 Fer4: 4Fe-4S binding 98.3 3.8E-07 8.2E-12 52.3 1.6 24 523-546 1-24 (24)
286 TIGR01316 gltA glutamate synth 98.3 3.3E-05 7.3E-10 81.1 17.4 109 23-203 273-386 (449)
287 PTZ00318 NADH dehydrogenase-li 98.3 5.4E-05 1.2E-09 79.0 18.7 98 23-203 174-279 (424)
288 PRK05888 NADH dehydrogenase su 98.3 8.5E-07 1.8E-11 79.2 4.3 55 487-547 57-116 (164)
289 COG1149 MinD superfamily P-loo 98.3 3E-07 6.5E-12 85.5 1.4 57 485-551 66-122 (284)
290 COG3634 AhpF Alkyl hydroperoxi 98.2 2E-06 4.2E-11 82.3 6.7 115 20-203 209-324 (520)
291 PRK13984 putative oxidoreducta 98.2 3.1E-06 6.6E-11 92.6 9.2 40 21-66 282-321 (604)
292 PRK04965 NADH:flavorubredoxin 98.2 1.9E-05 4E-10 81.3 14.4 99 23-205 142-240 (377)
293 TIGR00403 ndhI NADH-plastoquin 98.2 5.6E-07 1.2E-11 81.4 2.7 58 485-548 59-122 (183)
294 PTZ00153 lipoamide dehydrogena 98.2 4.1E-06 8.9E-11 90.9 9.7 52 22-79 116-168 (659)
295 PTZ00188 adrenodoxin reductase 98.2 3.4E-06 7.4E-11 86.9 8.5 44 21-70 38-82 (506)
296 COG3573 Predicted oxidoreducta 98.2 1E-05 2.2E-10 77.1 10.9 178 20-204 3-228 (552)
297 PRK09754 phenylpropionate diox 98.2 1.8E-05 3.9E-10 82.0 14.0 98 23-205 145-242 (396)
298 COG4529 Uncharacterized protei 98.2 1.9E-05 4.2E-10 79.9 13.3 158 22-205 1-165 (474)
299 PRK06991 ferredoxin; Provision 98.2 5.2E-07 1.1E-11 86.2 2.0 55 484-548 81-135 (270)
300 TIGR03169 Nterm_to_SelD pyridi 98.2 6.7E-06 1.5E-10 84.2 10.4 43 330-372 270-312 (364)
301 PRK05113 electron transport co 98.2 5.7E-07 1.2E-11 81.9 2.0 57 482-548 108-164 (191)
302 PRK10194 ferredoxin-type prote 98.2 1.2E-06 2.6E-11 78.2 3.8 52 499-550 109-160 (163)
303 PRK11883 protoporphyrinogen ox 98.2 1.6E-06 3.5E-11 91.6 5.4 39 24-68 2-42 (451)
304 COG3349 Uncharacterized conser 98.2 1.8E-06 3.8E-11 88.2 5.1 40 24-69 2-41 (485)
305 TIGR03452 mycothione_red mycot 98.2 6.3E-06 1.4E-10 86.7 9.3 49 22-79 2-50 (452)
306 COG1145 NapF Ferredoxin [Energ 98.2 8.1E-07 1.7E-11 72.3 2.0 61 484-550 25-85 (99)
307 PRK07846 mycothione reductase; 98.2 1.9E-05 4.1E-10 83.0 12.6 48 22-78 1-48 (451)
308 PLN02268 probable polyamine ox 98.2 2.1E-06 4.6E-11 90.1 5.5 40 23-68 1-40 (435)
309 KOG0404|consensus 98.2 9.3E-06 2E-10 73.0 8.5 120 19-204 5-124 (322)
310 TIGR02374 nitri_red_nirB nitri 98.1 7.5E-06 1.6E-10 91.7 9.8 37 25-64 1-37 (785)
311 TIGR03149 cyt_nit_nrfC cytochr 98.1 1.6E-06 3.4E-11 81.5 3.6 57 485-548 89-145 (225)
312 TIGR01971 NuoI NADH-quinone ox 98.1 1.5E-06 3.3E-11 73.6 3.0 56 487-548 42-102 (122)
313 PF12837 Fer4_6: 4Fe-4S bindin 98.1 3.9E-07 8.5E-12 52.0 -0.6 23 523-545 2-24 (24)
314 TIGR02066 dsrB sulfite reducta 98.1 6.6E-07 1.4E-11 89.0 0.4 57 486-546 176-232 (341)
315 TIGR02494 PFLE_PFLC glycyl-rad 98.1 7.9E-07 1.7E-11 88.1 0.9 60 483-548 43-102 (295)
316 PLN02568 polyamine oxidase 98.1 3.8E-06 8.3E-11 89.6 6.0 48 19-67 2-49 (539)
317 PRK05976 dihydrolipoamide dehy 98.1 3.8E-05 8.2E-10 81.5 13.3 103 22-205 180-282 (472)
318 PRK14993 tetrathionate reducta 98.1 1.3E-06 2.8E-11 82.8 1.9 57 485-549 95-151 (244)
319 PRK14989 nitrite reductase sub 98.1 3.6E-05 7.9E-10 86.4 13.6 111 23-217 146-256 (847)
320 PRK08764 ferredoxin; Provision 98.1 1.9E-06 4E-11 74.0 2.5 53 486-548 83-135 (135)
321 PRK14989 nitrite reductase sub 98.1 1.8E-05 3.9E-10 88.8 10.9 41 22-64 3-43 (847)
322 TIGR01350 lipoamide_DH dihydro 98.1 4E-05 8.6E-10 81.2 13.0 101 22-205 170-270 (461)
323 TIGR00031 UDP-GALP_mutase UDP- 98.1 4.1E-06 8.8E-11 84.8 5.2 38 23-66 2-39 (377)
324 TIGR02733 desat_CrtD C-3',4' d 98.1 4E-06 8.6E-11 89.5 5.3 63 130-203 231-293 (492)
325 PTZ00318 NADH dehydrogenase-li 98.1 1.9E-05 4.2E-10 82.4 10.3 37 21-63 9-45 (424)
326 TIGR00402 napF ferredoxin-type 98.0 2.3E-06 4.9E-11 69.6 2.3 54 486-547 32-85 (101)
327 TIGR02163 napH_ ferredoxin-typ 98.0 2.3E-06 5E-11 82.1 2.6 60 481-548 194-254 (255)
328 PRK06370 mercuric reductase; V 98.0 6E-05 1.3E-09 79.8 13.3 102 22-205 171-272 (463)
329 TIGR03169 Nterm_to_SelD pyridi 98.0 0.0005 1.1E-08 70.4 19.7 99 23-205 146-244 (364)
330 TIGR02374 nitri_red_nirB nitri 98.0 5.6E-05 1.2E-09 84.8 13.4 108 23-216 141-248 (785)
331 PRK13409 putative ATPase RIL; 98.0 3E-06 6.5E-11 91.4 3.2 63 482-551 4-73 (590)
332 PF12797 Fer4_2: 4Fe-4S bindin 98.0 1.7E-06 3.7E-11 47.3 0.6 21 522-542 2-22 (22)
333 TIGR02053 MerA mercuric reduct 98.0 6.5E-05 1.4E-09 79.6 13.1 102 22-205 166-267 (463)
334 PRK09564 coenzyme A disulfide 98.0 8.6E-05 1.9E-09 78.2 14.0 98 23-205 150-247 (444)
335 COG1249 Lpd Pyruvate/2-oxoglut 98.0 6.1E-05 1.3E-09 78.1 12.3 104 20-206 171-274 (454)
336 PLN02576 protoporphyrinogen ox 98.0 7E-06 1.5E-10 87.8 5.6 43 21-68 11-53 (496)
337 PRK05249 soluble pyridine nucl 98.0 5.1E-05 1.1E-09 80.3 12.1 99 22-205 175-273 (461)
338 PRK07251 pyridine nucleotide-d 98.0 7.3E-05 1.6E-09 78.5 13.1 98 22-205 157-254 (438)
339 PRK06416 dihydrolipoamide dehy 98.0 6.8E-05 1.5E-09 79.4 12.9 102 22-205 172-273 (462)
340 PRK06116 glutathione reductase 98.0 8.4E-05 1.8E-09 78.4 13.4 100 22-205 167-266 (450)
341 PRK09898 hypothetical protein; 98.0 7E-06 1.5E-10 76.4 4.4 56 486-548 119-174 (208)
342 PRK09476 napG quinol dehydroge 98.0 4.8E-06 1E-10 79.4 3.2 74 485-559 134-220 (254)
343 TIGR03385 CoA_CoA_reduc CoA-di 98.0 0.00011 2.4E-09 76.9 13.9 97 23-205 138-234 (427)
344 CHL00014 ndhI NADH dehydrogena 98.0 3.2E-06 6.8E-11 75.6 1.8 58 485-548 56-119 (167)
345 COG2768 Uncharacterized Fe-S c 98.0 2.7E-06 5.9E-11 79.6 1.4 49 486-546 191-239 (354)
346 PRK06115 dihydrolipoamide dehy 98.0 9.7E-05 2.1E-09 78.1 13.3 104 22-205 174-277 (466)
347 PRK09477 napH quinol dehydroge 98.0 4E-06 8.8E-11 81.3 2.5 61 482-548 202-262 (271)
348 PRK10882 hydrogenase 2 protein 97.9 4.4E-06 9.6E-11 82.2 2.6 57 486-549 108-164 (328)
349 TIGR03224 benzo_boxA benzoyl-C 97.9 4.1E-06 9E-11 86.3 2.4 63 484-558 6-68 (411)
350 TIGR01421 gluta_reduc_1 glutat 97.9 0.00013 2.8E-09 76.8 13.4 100 22-205 166-266 (450)
351 TIGR03377 glycerol3P_GlpA glyc 97.9 0.0033 7.1E-08 67.5 24.4 78 126-217 123-200 (516)
352 PRK10330 formate dehydrogenase 97.9 5.2E-06 1.1E-10 75.6 2.5 53 487-548 55-107 (181)
353 PRK06912 acoL dihydrolipoamide 97.9 0.0001 2.2E-09 77.8 12.5 100 22-205 170-269 (458)
354 PRK07818 dihydrolipoamide dehy 97.9 0.00013 2.7E-09 77.4 13.2 103 22-205 172-274 (466)
355 TIGR02951 DMSO_dmsB DMSO reduc 97.9 6.9E-06 1.5E-10 73.2 2.9 57 487-550 61-117 (161)
356 PRK07118 ferredoxin; Validated 97.9 5.4E-06 1.2E-10 80.2 2.3 54 487-551 212-265 (280)
357 TIGR01424 gluta_reduc_2 glutat 97.9 0.00013 2.8E-09 76.8 12.8 98 22-204 166-263 (446)
358 TIGR02700 flavo_MJ0208 archaeo 97.9 4.9E-06 1.1E-10 78.9 1.7 52 485-547 145-196 (234)
359 TIGR00397 mauM_napG MauM/NapG 97.9 1.1E-05 2.4E-10 74.9 4.0 65 485-550 128-199 (213)
360 COG0446 HcaD Uncharacterized N 97.9 0.00012 2.6E-09 76.2 12.2 102 22-205 136-238 (415)
361 PRK14028 pyruvate ferredoxin o 97.9 5.3E-06 1.2E-10 82.5 1.9 59 484-548 243-309 (312)
362 KOG0399|consensus 97.9 3.9E-05 8.5E-10 83.5 7.9 42 21-68 1784-1825(2142)
363 PLN02785 Protein HOTHEAD 97.8 0.00026 5.7E-09 76.5 14.5 36 20-62 53-88 (587)
364 PRK07845 flavoprotein disulfid 97.8 0.00017 3.8E-09 76.2 12.9 98 23-205 178-275 (466)
365 COG0562 Glf UDP-galactopyranos 97.8 1.9E-05 4E-10 75.3 4.9 39 22-66 1-39 (374)
366 KOG1276|consensus 97.8 2.2E-05 4.8E-10 77.6 5.4 46 20-69 9-54 (491)
367 KOG2311|consensus 97.8 5.5E-05 1.2E-09 75.6 8.1 36 20-61 26-61 (679)
368 PLN02507 glutathione reductase 97.8 0.00015 3.2E-09 77.2 12.1 99 22-205 203-301 (499)
369 COG1252 Ndh NADH dehydrogenase 97.8 8.3E-05 1.8E-09 75.2 9.3 38 21-62 2-39 (405)
370 COG3075 GlpB Anaerobic glycero 97.8 1.9E-05 4.2E-10 75.3 4.5 36 21-62 1-36 (421)
371 TIGR03287 methan_mark_16 putat 97.8 9.9E-06 2.1E-10 80.5 2.6 54 484-551 298-353 (391)
372 COG3486 IucD Lysine/ornithine 97.8 0.0002 4.4E-09 70.8 11.6 155 20-208 3-161 (436)
373 COG1252 Ndh NADH dehydrogenase 97.8 0.00011 2.3E-09 74.5 9.8 102 21-205 154-263 (405)
374 PTZ00058 glutathione reductase 97.8 0.00025 5.4E-09 76.1 13.2 101 22-205 237-337 (561)
375 PRK13512 coenzyme A disulfide 97.8 0.00018 3.8E-09 75.5 11.8 94 23-205 149-242 (438)
376 PLN02676 polyamine oxidase 97.8 2.7E-05 5.9E-10 82.4 5.7 41 21-67 25-66 (487)
377 PRK06327 dihydrolipoamide dehy 97.8 0.00024 5.2E-09 75.4 12.9 103 22-205 183-285 (475)
378 PTZ00153 lipoamide dehydrogena 97.8 0.0003 6.5E-09 76.6 13.6 116 22-205 312-428 (659)
379 PLN02529 lysine-specific histo 97.8 3.2E-05 6.9E-10 84.7 6.0 42 20-67 158-199 (738)
380 KOG4254|consensus 97.8 0.00012 2.6E-09 72.9 9.3 60 131-206 264-323 (561)
381 TIGR02912 sulfite_red_C sulfit 97.8 8.1E-06 1.7E-10 81.2 1.3 51 485-546 166-219 (314)
382 KOG1336|consensus 97.8 0.00017 3.8E-09 72.7 10.6 102 22-205 213-314 (478)
383 PRK08318 dihydropyrimidine deh 97.8 1.9E-05 4.1E-10 82.2 3.8 60 485-552 339-402 (420)
384 PLN02328 lysine-specific histo 97.8 3.3E-05 7.1E-10 85.0 5.7 42 20-67 236-277 (808)
385 TIGR02512 Fe_only_hydrog hydro 97.8 6.9E-06 1.5E-10 83.7 0.5 59 484-548 3-70 (374)
386 COG2907 Predicted NAD/FAD-bind 97.7 2.7E-05 5.9E-10 74.8 4.2 40 21-67 7-46 (447)
387 PRK06567 putative bifunctional 97.7 3.4E-05 7.3E-10 85.5 5.5 38 20-63 381-418 (1028)
388 PRK14694 putative mercuric red 97.7 0.00045 9.8E-09 73.2 13.6 97 22-205 178-274 (468)
389 PRK08010 pyridine nucleotide-d 97.7 0.00037 7.9E-09 73.3 12.8 97 23-205 159-255 (441)
390 PLN02487 zeta-carotene desatur 97.7 4.1E-05 8.9E-10 81.9 5.4 41 21-67 74-114 (569)
391 TIGR01423 trypano_reduc trypan 97.7 0.00041 8.8E-09 73.5 12.8 103 22-205 187-289 (486)
392 PRK05329 anaerobic glycerol-3- 97.7 3.8E-05 8.3E-10 79.1 4.9 35 21-61 1-35 (422)
393 COG2221 DsrA Dissimilatory sul 97.7 1E-05 2.2E-10 77.1 0.6 45 486-541 170-214 (317)
394 PRK07846 mycothione reductase; 97.7 0.00045 9.7E-09 72.7 12.9 98 22-205 166-263 (451)
395 TIGR02176 pyruv_ox_red pyruvat 97.7 1.9E-05 4.1E-10 91.0 2.7 60 483-548 678-761 (1165)
396 PRK00783 DNA-directed RNA poly 97.7 1.9E-05 4.2E-10 76.4 2.2 54 487-550 168-221 (263)
397 PRK06292 dihydrolipoamide dehy 97.7 0.00058 1.3E-08 72.3 13.6 101 22-205 169-269 (460)
398 PRK12831 putative oxidoreducta 97.7 0.00052 1.1E-08 72.4 13.0 111 22-204 281-396 (464)
399 PF00732 GMC_oxred_N: GMC oxid 97.7 3.2E-05 6.9E-10 76.7 3.7 65 132-205 194-259 (296)
400 PTZ00052 thioredoxin reductase 97.7 0.00054 1.2E-08 73.0 13.2 97 23-205 183-279 (499)
401 PRK06467 dihydrolipoamide dehy 97.7 0.00048 1E-08 72.9 12.6 102 23-206 175-276 (471)
402 PRK12775 putative trifunctiona 97.6 0.0024 5.2E-08 73.4 18.9 112 21-204 570-686 (1006)
403 TIGR03452 mycothione_red mycot 97.6 0.00057 1.2E-08 72.0 12.8 98 22-205 169-266 (452)
404 PRK12769 putative oxidoreducta 97.6 3.4E-05 7.3E-10 85.1 3.5 54 487-549 53-106 (654)
405 cd07030 RNAP_D D subunit of Ar 97.6 2.5E-05 5.4E-10 75.4 2.2 55 488-552 169-223 (259)
406 COG1206 Gid NAD(FAD)-utilizing 97.6 0.00016 3.4E-09 69.2 7.3 39 21-65 2-40 (439)
407 TIGR03140 AhpF alkyl hydropero 97.6 0.00047 1E-08 73.9 12.0 98 23-205 353-451 (515)
408 PRK14727 putative mercuric red 97.6 0.00068 1.5E-08 72.0 12.8 98 22-206 188-285 (479)
409 TIGR03294 FrhG coenzyme F420 h 97.6 1.8E-05 3.9E-10 74.3 0.6 52 484-546 170-221 (228)
410 PRK09898 hypothetical protein; 97.6 2.8E-05 6E-10 72.4 1.9 54 483-549 149-202 (208)
411 PRK13795 hypothetical protein; 97.6 3.1E-05 6.7E-10 84.2 2.5 56 483-547 576-631 (636)
412 PRK10262 thioredoxin reductase 97.6 0.00052 1.1E-08 68.9 11.1 104 22-205 146-249 (321)
413 PLN02546 glutathione reductase 97.6 0.00092 2E-08 71.8 13.1 101 22-206 252-352 (558)
414 PRK10194 ferredoxin-type prote 97.5 2.2E-05 4.7E-10 70.1 0.5 50 499-549 71-125 (163)
415 TIGR03149 cyt_nit_nrfC cytochr 97.5 4.4E-05 9.6E-10 71.7 2.5 55 484-551 121-185 (225)
416 KOG0685|consensus 97.5 0.00011 2.3E-09 74.1 5.0 42 22-68 21-62 (498)
417 PRK15317 alkyl hydroperoxide r 97.5 0.00067 1.4E-08 72.8 11.4 97 23-204 352-449 (517)
418 PRK02106 choline dehydrogenase 97.5 9.9E-05 2.1E-09 80.0 5.1 37 20-62 3-40 (560)
419 TIGR01438 TGR thioredoxin and 97.5 0.001 2.2E-08 70.6 12.5 100 23-205 181-280 (484)
420 PRK07569 bidirectional hydroge 97.5 5.8E-05 1.3E-09 71.6 2.5 59 484-548 142-210 (234)
421 PRK13984 putative oxidoreducta 97.5 5E-05 1.1E-09 83.1 2.3 58 485-548 42-106 (604)
422 PRK13748 putative mercuric red 97.5 0.00096 2.1E-08 72.5 12.2 98 22-206 270-367 (561)
423 PF06100 Strep_67kDa_ant: Stre 97.5 0.004 8.6E-08 64.0 15.4 43 23-67 3-45 (500)
424 PLN03000 amine oxidase 97.5 0.00013 2.9E-09 80.4 5.2 41 21-67 183-223 (881)
425 TIGR00397 mauM_napG MauM/NapG 97.5 8.3E-05 1.8E-09 69.1 3.1 61 486-550 89-160 (213)
426 PRK05675 sdhA succinate dehydr 97.5 0.00045 9.7E-09 74.8 9.3 66 131-206 126-191 (570)
427 PRK12809 putative oxidoreducta 97.5 5.1E-05 1.1E-09 83.3 2.0 54 486-548 52-105 (639)
428 KOG1800|consensus 97.4 0.0002 4.3E-09 69.9 5.4 48 20-71 18-65 (468)
429 TIGR01292 TRX_reduct thioredox 97.4 0.0011 2.5E-08 65.5 11.3 98 22-205 141-239 (300)
430 TIGR01317 GOGAT_sm_gam glutama 97.4 0.0097 2.1E-07 63.2 18.4 39 330-373 443-481 (485)
431 COG2878 Predicted NADH:ubiquin 97.4 2.2E-05 4.8E-10 68.0 -1.4 67 473-549 100-166 (198)
432 PLN02976 amine oxidase 97.4 0.00023 5.1E-09 81.4 5.8 41 21-67 692-732 (1713)
433 PRK07118 ferredoxin; Validated 97.3 6.9E-05 1.5E-09 72.6 1.3 45 499-548 144-188 (280)
434 PRK09326 F420H2 dehydrogenase 97.3 6E-05 1.3E-09 75.8 0.8 57 483-545 7-70 (341)
435 TIGR03478 DMSO_red_II_bet DMSO 97.3 5.3E-05 1.1E-09 72.9 -0.0 53 482-547 156-217 (321)
436 PRK12770 putative glutamate sy 97.3 0.0015 3.2E-08 66.5 10.4 33 23-61 173-206 (352)
437 PRK12810 gltD glutamate syntha 97.3 0.002 4.3E-08 68.3 11.6 119 22-204 281-400 (471)
438 PRK09476 napG quinol dehydroge 97.3 0.00018 3.9E-09 68.7 3.3 58 488-549 97-165 (254)
439 PF13247 Fer4_11: 4Fe-4S diclu 97.3 7E-05 1.5E-09 59.9 0.2 54 482-548 34-96 (98)
440 PRK12778 putative bifunctional 97.2 0.0028 6E-08 71.3 12.8 109 23-203 571-685 (752)
441 COG3383 Uncharacterized anaero 97.2 0.00016 3.5E-09 76.0 2.4 57 483-545 144-209 (978)
442 PF13484 Fer4_16: 4Fe-4S doubl 97.2 4.4E-05 9.5E-10 57.0 -1.3 44 499-542 5-66 (67)
443 PF12800 Fer4_4: 4Fe-4S bindin 97.2 0.00021 4.5E-09 37.0 1.5 17 527-543 1-17 (17)
444 PRK14993 tetrathionate reducta 97.2 0.00011 2.4E-09 69.8 0.4 54 482-548 124-186 (244)
445 TIGR01318 gltD_gamma_fam gluta 97.1 0.0055 1.2E-07 64.8 12.8 110 22-203 282-397 (467)
446 PRK10330 formate dehydrogenase 97.1 0.00028 6.1E-09 64.2 2.3 60 484-549 83-156 (181)
447 PRK11749 dihydropyrimidine deh 97.1 0.0053 1.1E-07 64.9 12.2 110 22-204 273-387 (457)
448 TIGR02951 DMSO_dmsB DMSO reduc 97.1 0.00018 3.9E-09 64.1 0.9 53 484-549 91-152 (161)
449 PRK10882 hydrogenase 2 protein 97.1 0.00018 3.8E-09 71.0 0.8 53 484-547 139-204 (328)
450 TIGR02064 dsrA sulfite reducta 97.0 0.00023 5E-09 72.3 1.5 43 499-546 247-289 (402)
451 PRK08493 NADH dehydrogenase su 97.0 0.00022 4.8E-09 78.8 1.4 58 483-548 136-224 (819)
452 PF14697 Fer4_21: 4Fe-4S diclu 97.0 0.00044 9.5E-09 49.7 2.3 24 524-547 2-25 (59)
453 COG2303 BetA Choline dehydroge 97.0 0.00067 1.4E-08 72.8 4.6 37 19-61 4-40 (542)
454 COG0437 HybA Fe-S-cluster-cont 97.0 0.00042 9.1E-09 62.7 2.1 54 481-547 93-155 (203)
455 PRK05329 anaerobic glycerol-3- 96.9 0.025 5.4E-07 58.5 15.4 58 132-203 260-317 (422)
456 TIGR03862 flavo_PP4765 unchara 96.9 0.0046 9.9E-08 62.7 9.5 142 51-218 1-162 (376)
457 TIGR01810 betA choline dehydro 96.9 0.00068 1.5E-08 73.0 3.9 61 133-205 196-256 (532)
458 TIGR01582 FDH-beta formate deh 96.9 0.00029 6.3E-09 68.1 0.9 53 483-548 119-180 (283)
459 COG4231 Indolepyruvate ferredo 96.9 0.00042 9E-09 72.2 1.8 52 484-546 573-626 (640)
460 PF12798 Fer4_3: 4Fe-4S bindin 96.9 0.00025 5.5E-09 35.3 0.0 15 530-544 1-15 (15)
461 COG1148 HdrA Heterodisulfide r 96.8 0.00044 9.6E-09 69.6 1.0 58 484-548 221-291 (622)
462 PF13434 K_oxygenase: L-lysine 96.7 0.017 3.8E-07 58.1 12.0 144 20-202 188-339 (341)
463 TIGR01372 soxA sarcosine oxida 96.7 0.021 4.5E-07 66.1 13.9 103 23-216 318-421 (985)
464 TIGR03336 IOR_alpha indolepyru 96.7 0.00059 1.3E-08 74.2 0.9 47 485-545 547-595 (595)
465 KOG0405|consensus 96.7 0.023 4.9E-07 55.3 11.3 43 20-68 18-60 (478)
466 TIGR02163 napH_ ferredoxin-typ 96.6 0.0013 2.8E-08 63.3 2.8 48 500-547 172-220 (255)
467 PF00996 GDI: GDP dissociation 96.6 0.059 1.3E-06 55.7 14.9 54 131-200 232-285 (438)
468 PRK05035 electron transport co 96.6 0.00056 1.2E-08 74.5 0.1 52 486-543 368-424 (695)
469 PRK12779 putative bifunctional 96.6 0.025 5.5E-07 64.6 13.3 112 22-205 447-563 (944)
470 TIGR03143 AhpF_homolog putativ 96.5 0.019 4.1E-07 62.2 11.2 35 22-62 143-177 (555)
471 KOG3851|consensus 96.5 0.0071 1.5E-07 57.9 6.7 40 19-62 36-75 (446)
472 COG1144 Pyruvate:ferredoxin ox 96.5 0.0021 4.6E-08 49.1 2.5 38 521-559 28-66 (91)
473 PRK12387 formate hydrogenlyase 96.4 0.0014 2.9E-08 59.6 1.7 50 499-550 11-60 (180)
474 KOG2495|consensus 96.4 0.016 3.5E-07 57.9 8.9 111 22-211 218-337 (491)
475 COG1251 NirB NAD(P)H-nitrite r 96.3 0.011 2.3E-07 63.2 7.8 109 24-218 147-255 (793)
476 COG1142 HycB Fe-S-cluster-cont 96.3 0.0021 4.6E-08 56.1 2.0 60 482-548 76-139 (165)
477 PRK09477 napH quinol dehydroge 96.3 0.0008 1.7E-08 65.4 -0.8 47 500-546 179-226 (271)
478 TIGR02745 ccoG_rdxA_fixG cytoc 96.3 0.0018 3.8E-08 66.7 1.5 40 487-542 230-269 (434)
479 TIGR01660 narH nitrate reducta 96.2 0.0013 2.9E-08 66.1 0.5 53 482-547 208-269 (492)
480 PRK09853 putative selenate red 96.2 0.052 1.1E-06 61.6 12.6 57 486-544 884-942 (1019)
481 KOG0063|consensus 96.2 0.0026 5.6E-08 63.3 2.0 56 481-546 7-68 (592)
482 KOG1336|consensus 96.2 0.027 5.9E-07 57.3 9.1 41 143-202 139-179 (478)
483 KOG1238|consensus 96.0 0.0078 1.7E-07 63.5 5.0 39 20-63 55-93 (623)
484 COG1143 NuoI Formate hydrogenl 96.0 0.0029 6.3E-08 56.1 1.6 29 522-550 49-77 (172)
485 TIGR01973 NuoG NADH-quinone ox 95.9 0.0057 1.2E-07 66.9 3.4 58 482-546 136-200 (603)
486 TIGR01945 rnfC electron transp 95.9 0.0031 6.8E-08 65.6 1.3 52 486-543 361-417 (435)
487 PF13237 Fer4_10: 4Fe-4S diclu 95.8 0.0042 9.1E-08 43.5 1.3 21 522-542 1-21 (52)
488 PRK12771 putative glutamate sy 95.7 0.11 2.4E-06 56.5 12.4 39 331-374 409-447 (564)
489 TIGR02936 fdxN_nitrog ferredox 95.7 0.0043 9.3E-08 49.3 1.1 28 521-548 14-41 (91)
490 PRK09626 oorD 2-oxoglutarate-a 95.7 0.0048 1E-07 50.3 1.2 30 521-550 9-38 (103)
491 PF00037 Fer4: 4Fe-4S binding 95.6 0.0038 8.2E-08 35.7 0.4 22 485-512 3-24 (24)
492 TIGR02486 RDH reductive dehalo 95.6 0.0049 1.1E-07 60.8 1.3 50 488-543 205-279 (314)
493 PF12837 Fer4_6: 4Fe-4S bindin 95.6 0.002 4.4E-08 36.7 -0.8 22 484-511 3-24 (24)
494 KOG4716|consensus 95.6 0.013 2.8E-07 56.6 3.8 36 19-60 16-51 (503)
495 COG1600 Uncharacterized Fe-S p 95.5 0.0043 9.2E-08 61.0 0.6 58 488-553 185-257 (337)
496 PRK07860 NADH dehydrogenase su 95.5 0.0096 2.1E-07 67.1 3.3 58 482-546 144-208 (797)
497 TIGR03315 Se_ygfK putative sel 95.4 0.21 4.6E-06 57.1 13.6 59 486-547 879-940 (1012)
498 PF01593 Amino_oxidase: Flavin 95.3 0.014 3.1E-07 60.7 3.8 64 125-205 203-266 (450)
499 COG2221 DsrA Dissimilatory sul 95.3 0.0042 9.1E-08 59.7 -0.4 28 521-548 165-192 (317)
500 TIGR02179 PorD_KorD 2-oxoacid: 95.3 0.0088 1.9E-07 45.9 1.5 27 522-548 19-45 (78)
No 1
>KOG2415|consensus
Probab=100.00 E-value=1.8e-113 Score=813.02 Aligned_cols=545 Identities=54% Similarity=0.994 Sum_probs=522.4
Q ss_pred CCCCCCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccc
Q psy14496 14 KYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFN 92 (561)
Q Consensus 14 ~~~~~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~ 92 (561)
.+++|+...+||+|||||||||++|+.|.++.++++..++|+|+||+..+|++.++|++++|.++++++++|. .+.++.
T Consensus 68 v~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~ 147 (621)
T KOG2415|consen 68 VNMERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLN 147 (621)
T ss_pred ccchhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccc
Confidence 3455777889999999999999999999999888889999999999999999999999999999999999999 889999
Q ss_pred cccchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecc
Q psy14496 93 TPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNN 172 (561)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 172 (561)
.+++.+.+.++.....+.+| .|..+.++++|+++.++|.+||.++|++.||+|+++..+.++++++++.|.||.|.|
T Consensus 148 t~vT~d~~~fLt~~~~i~vP---v~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D 224 (621)
T KOG2415|consen 148 TPVTSDKFKFLTGKGRISVP---VPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATND 224 (621)
T ss_pred ccccccceeeeccCceeecC---CCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecc
Confidence 99999999999998888887 456788999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccC
Q psy14496 173 FGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWP 252 (561)
Q Consensus 173 ~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 252 (561)
.|+.++|.+|.+|+.|+++.|++.|.|+|+++.+.++++++++++....+++|++|++++|++++.++.++.+.|+++||
T Consensus 225 ~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwP 304 (621)
T KOG2415|consen 225 VGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWP 304 (621)
T ss_pred ccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecC
Q psy14496 253 LDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFD 332 (561)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (561)
++...||++|+|+.++..+.+|+++.+++.+|..+|+.+||+++.||.++..+++++++.|+++++.++|+++.|+++++
T Consensus 305 l~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~FP 384 (621)
T KOG2415|consen 305 LDNDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVFP 384 (621)
T ss_pred ccCCccCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccc----hhhHHHHHhhchhhHhhhhhhccchhhh--
Q psy14496 333 GGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK----LITYKTSFQASWLYKELYKARNFKPAMK-- 406 (561)
Q Consensus 333 ~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~----l~~y~~~~~~~~~~~~~~~~~~~~~~~~-- 406 (561)
+-+|||.+|+++|.....|.++||.+|+++|++|.+++.+...+.. +..|++.++++|+.++++..||+++.|+
T Consensus 385 GG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~~ 464 (621)
T KOG2415|consen 385 GGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGK 464 (621)
T ss_pred CceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCcccccc
Confidence 9999999999999999999999999999999999999975542221 5699999999999999999999999995
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCccccCCCCccCCcccccCCCCCCCCCCCCccccccccceeccccccCCCCCCceEEcC
Q psy14496 407 KGLYIGMLIIGIDQILFSGKFPFTLHNINSDYTYLEPASKHIPIKYPNPDNKLTFDKLSSIYVSNINHDEDQPIHLILKN 486 (561)
Q Consensus 407 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fd~~~~~~~~~~~~~~~~~~h~~~~~ 486 (561)
.|.|.||..+++..++.+|+.||+|+|+..|.+.+++++++.++.||+||++|+||.++||+++|++|++|||||++++|
T Consensus 465 lG~ygGmiySgi~~~~lkG~~PwTLkh~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~HL~l~~ 544 (621)
T KOG2415|consen 465 LGLYGGMIYSGIFSYVLKGKVPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPAHLTLRD 544 (621)
T ss_pred cccccchhhhhhHHHhhcCccceeeccCCCchhhccchhhCCCcccCCCCceEEEeecchhhccCCCCCCCCCceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCc--eeEEEEccCCCccCCcccccCCCCCeeEECCCCCCCCCCCCC
Q psy14496 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNK--IQHLQINAQNCIHCKTCDIKDPTQNIEWITPEGGSGTNYPNM 561 (561)
Q Consensus 487 ~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~--~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g~~g~~~~~~ 561 (561)
.++..+.+++.|.++..+||||+|||+++++.+ +++++||.+|||||+||+|+.|.++|+|.+||||.||.|..|
T Consensus 545 ~~ip~~~nf~~y~gpE~rfCPAgVYEyV~dE~~~~~krlqINaQNCiHCKtCDIKdP~QnI~W~vPeGGgGP~Y~~m 621 (621)
T KOG2415|consen 545 DDIPVKVNFPVYKGPESRFCPAGVYEYVPDEAGPVGKRLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPKYTLM 621 (621)
T ss_pred CCcchhcCcccccChhhccCCccceeecccccCCCcceEEEccccceecccccccCcccCceeeCcCCCCCCCcccC
Confidence 999999999999999999999999999887644 359999999999999999999999999999999999999987
No 2
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=5.4e-42 Score=355.11 Aligned_cols=374 Identities=23% Similarity=0.423 Sum_probs=290.8
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
.+|||+||||||||+++|+.|++. |++|+||||.+.+|.+..+|+.+....+..+++.+....++...+..+.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~------G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~ 77 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA------GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKI 77 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeE
Confidence 359999999999999999999999 99999999999998877778777777777776654333344444444445
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCc
Q psy14496 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGI 180 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~ 180 (561)
.++..+....++.............|.+.|..|+++|.+++++.|++++.+++|+++..+ ++++.+|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~--------- 147 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAG--------- 147 (429)
T ss_pred EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeC---------
Confidence 554443322222100000011124789999999999999999999999999999998764 4556666552
Q ss_pred eecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCcc--------CCCcEEEEeccC
Q psy14496 181 IKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLH--------KKGLVIHTIGWP 252 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~p 252 (561)
+.+++||+||+|||.+|.+++. +++.....+..+..+++..+.+++... ..+..++.+++|
T Consensus 148 -------~~~i~A~~VI~AdG~~s~v~~~----lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~ 216 (429)
T PRK10015 148 -------DDILEANVVILADGVNSMLGRS----LGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSP 216 (429)
T ss_pred -------CeEEECCEEEEccCcchhhhcc----cCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCcc
Confidence 2479999999999999998877 666555556667788887777653321 235566677776
Q ss_pred CCCCCCceEEEEEcCCCeEEEEEEecCC-CCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeec
Q psy14496 253 LDYKTYGGGFLYHMENNQISIGYIISLD-YKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIF 331 (561)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (561)
.. +..|++|+|+. .+.+++|++...+ ..+...++.+.++.|+.||.+++++++++.+++..+.+|.+++...|++..
T Consensus 217 ~~-g~~g~G~~~~~-~d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~ 294 (429)
T PRK10015 217 SD-GLMGGGFLYTN-KDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVN 294 (429)
T ss_pred CC-CCCCceEEEEc-CCcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCcccc
Confidence 64 66778999995 5789999976543 234456788899999999999999999999999999999999888899999
Q ss_pred CCEEEEecCCccCCC--cccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhchhhHhhhhhhccchhhh--
Q psy14496 332 DGGAFIGCNAGFMNV--SRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQASWLYKELYKARNFKPAMK-- 406 (561)
Q Consensus 332 ~~v~lvGDAa~~~~P--~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~~-- 406 (561)
+|++++||||++++| ++|+|+++||.+|.++|+++.+++..++.+.. |+.|++.++++|+.++++..+++..++.
T Consensus 295 ~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~ 374 (429)
T PRK10015 295 DGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENP 374 (429)
T ss_pred CCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCc
Confidence 999999999999984 69999999999999999999999987776665 9999999999999999999999999983
Q ss_pred --hhhhHHHHHHHHHHHHh
Q psy14496 407 --KGLYIGMLIIGIDQILF 423 (561)
Q Consensus 407 --~g~~~g~~~~~~~~~~~ 423 (561)
+..|..++...+..++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~ 393 (429)
T PRK10015 375 RLFSQYPRMVADIMNDMFT 393 (429)
T ss_pred cHHHHHHHHHHHHHHHhcc
Confidence 34456666666666654
No 3
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=1.5e-40 Score=342.13 Aligned_cols=339 Identities=33% Similarity=0.554 Sum_probs=273.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
+|+|||+||||||||++||+.|++. |++|+|+||...+|.+..+|+.+.+..+.++++.+... +...+....
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~------G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~--i~~~v~~~~ 72 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKA------GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE--IERKVTGAR 72 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHc------CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh--hheeeeeeE
Confidence 4789999999999999999999999 99999999999999999898999999999988877522 333333333
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+........+..+ ....|+++|..|++||.++|++.|++++.+++++++..++++.++++...
T Consensus 73 ~~~~~~~~~~~~~---------~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~-------- 135 (396)
T COG0644 73 IYFPGEKVAIEVP---------VGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAG-------- 135 (396)
T ss_pred EEecCCceEEecC---------CCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcC--------
Confidence 3333111111111 13389999999999999999999999999999999998766665555542
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCCc
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYG 259 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 259 (561)
+.+++||+||+|||.+|.+++. +++. ...+..+.+++++.+..+ ..+...+.+.|+.+....|
T Consensus 136 --------~~e~~a~~vI~AdG~~s~l~~~----lg~~-~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~G 198 (396)
T COG0644 136 --------DDEVRAKVVIDADGVNSALARK----LGLK-DRKPEDYAIGVKEVIEVP----DDGDVEEFLYGPLDVGPGG 198 (396)
T ss_pred --------CEEEEcCEEEECCCcchHHHHH----hCCC-CCChhheeEEeEEEEecC----CCCceEEEEecCCccCCCc
Confidence 2589999999999999999888 5666 555677888888888877 3344557777777778889
Q ss_pred eEEEEEcCCCeEEEEEEecCCCCCCCCChH-HHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEEe
Q psy14496 260 GGFLYHMENNQISIGYIISLDYKNPYLSPF-EEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFIG 338 (561)
Q Consensus 260 ~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvG 338 (561)
++|+||.+++.+++|+....+. +...+. +.+++|+.+|.+...+.+++.+++..+.+|.+++...| +..+|+++||
T Consensus 199 y~wifP~~~~~~~VG~g~~~~~--~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~-~~~~~~~lvG 275 (396)
T COG0644 199 YGWIFPLGDGHANVGIGVLLDD--PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP-LVGDGVLLVG 275 (396)
T ss_pred eEEEEECCCceEEEEEEEecCC--cCCCchHHHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCc-cccCCEEEEe
Confidence 9999999999999999987765 333333 88999999998888888899999999999999987777 8889999999
Q ss_pred cCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 339 CNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 339 DAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|||++++|++|+|+..||.+|.+||+.|.+++..+ ...|..|++.+++++..+.++..+....+.
T Consensus 276 DAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~--~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~ 340 (396)
T COG0644 276 DAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG--EEALAEYERLLRKSLAREDLKSLRLLKLLL 340 (396)
T ss_pred ccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 99999999999999999999999999999998755 234889999999887655555444444433
No 4
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=100.00 E-value=6.3e-40 Score=340.19 Aligned_cols=374 Identities=22% Similarity=0.395 Sum_probs=285.3
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
..|||+||||||||+++|+.|+++ |++|+||||.+.++.+..+|+.+....++++++.+....++...+..+.+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~------G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE------GAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC------CCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence 359999999999999999999999 99999999999998887778888777777776654422333333333333
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCc
Q psy14496 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGI 180 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~ 180 (561)
.++...+...+..............|.+.|..|+++|.+.+++.|++++.+++|+++..+ ++.+++|.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~~--------- 147 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEAD--------- 147 (428)
T ss_pred EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEcC---------
Confidence 344333322222100000001123788999999999999999999999999999999765 4555555431
Q ss_pred eecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCcc--------CCCcEEEEeccC
Q psy14496 181 IKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLH--------KKGLVIHTIGWP 252 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~p 252 (561)
|.+++||+||+|||.+|.++++ +++.....+..+.+++++.++++.... ..+..+...++|
T Consensus 148 -------g~~i~A~~VI~A~G~~s~l~~~----lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 216 (428)
T PRK10157 148 -------GDVIEAKTVILADGVNSILAEK----LGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSP 216 (428)
T ss_pred -------CcEEECCEEEEEeCCCHHHHHH----cCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECC
Confidence 3579999999999999988777 677655556666777777766653211 234455666776
Q ss_pred CCCCCCceEEEEEcCCCeEEEEEEecCCCC-CCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeec
Q psy14496 253 LDYKTYGGGFLYHMENNQISIGYIISLDYK-NPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIF 331 (561)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (561)
.. +..|++|+|+. ++.+++|++...+.. +....+.+.++.|+.+|.+.+.+.+++.+++..+.+|.+++...|++..
T Consensus 217 ~~-g~~ggG~~~~~-~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~ 294 (428)
T PRK10157 217 TD-GLMGGGFLYTN-ENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVG 294 (428)
T ss_pred CC-CCcCceeEEEc-CCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCceec
Confidence 53 57778899985 578999998765432 3346678888999999999999999999999999999988877888999
Q ss_pred CCEEEEecCCccCCC--cccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhchhhHhhhhhhccchhhh--
Q psy14496 332 DGGAFIGCNAGFMNV--SRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQASWLYKELYKARNFKPAMK-- 406 (561)
Q Consensus 332 ~~v~lvGDAa~~~~P--~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~~-- 406 (561)
+|++++||||++++| ++|+|++.||.+|.++|+++.+++..++.+.. |..|++.++++ +.++++..+++..++.
T Consensus 295 ~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~-~~~~l~~~~~~~~~~~~~ 373 (428)
T PRK10157 295 DGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG-PLRDMRMYQKLPAFLDNP 373 (428)
T ss_pred CCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh-HHHHHHHHhccHHHhcCc
Confidence 999999999999998 59999999999999999999999987776665 99999999998 6899999999888883
Q ss_pred --hhhhHHHHHHHHHHHHhc
Q psy14496 407 --KGLYIGMLIIGIDQILFS 424 (561)
Q Consensus 407 --~g~~~g~~~~~~~~~~~~ 424 (561)
+..|..++...+..++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~ 393 (428)
T PRK10157 374 RMFSGYPELAVGVARDLFTI 393 (428)
T ss_pred cHHHHHHHHHHHHHHHheee
Confidence 345566766666666543
No 5
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=1.5e-30 Score=270.00 Aligned_cols=343 Identities=17% Similarity=0.222 Sum_probs=213.4
Q ss_pred CCCCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcccccc
Q psy14496 16 GPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPV 95 (561)
Q Consensus 16 ~~~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~ 95 (561)
.++..+.+||+||||||||+++|+.|++. |++|+|+||.... .. .+|+.+....++++ +.+. ......+
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~~------G~~VlllEr~~~~-~k-~cgg~i~~~~l~~l-gl~~--~~~~~~i 101 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAKG------GIETFLIERKLDN-AK-PCGGAIPLCMVGEF-DLPL--DIIDRKV 101 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCC-CC-CccccccHhHHhhh-cCcH--HHHHHHh
Confidence 33566789999999999999999999999 9999999998642 22 25666655554432 1111 0000011
Q ss_pred chhhhhhhcCCC-CcccCCCCCCceeecCC-cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCC-CCEEEEEecc
Q psy14496 96 IEERFLFLSSKK-SYKIPSWILPICFKNHG-NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSK-NNVCGIATNN 172 (561)
Q Consensus 96 ~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~-~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~-g~v~~V~~~~ 172 (561)
..+.+.+..+ .+.++ ....... .++++|..|+++|.+++.+.|++++.+ .++++...++ +..+.|.+.+
T Consensus 102 --~~~~~~~p~~~~v~~~-----~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~ 173 (450)
T PLN00093 102 --TKMKMISPSNVAVDIG-----KTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTS 173 (450)
T ss_pred --hhheEecCCceEEEec-----ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEe
Confidence 1122222211 11111 0000111 235899999999999999999999876 4777754221 2223444422
Q ss_pred ccc-ccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCC--ccCCCcEEEEe
Q psy14496 173 FGI-NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPK--LHKKGLVIHTI 249 (561)
Q Consensus 173 ~~~-~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 249 (561)
... ..+|+ +.+++||+||+|||++|.+++. +++.. ..+.++++..+..+.. .+.++.....+
T Consensus 174 ~~~~~~~g~-------~~~v~a~~VIgADG~~S~vrr~----lg~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (450)
T PLN00093 174 YDSGSGAGT-------PKTLEVDAVIGADGANSRVAKD----IDAGD----YDYAIAFQERIKIPDDKMEYYEDLAEMYV 238 (450)
T ss_pred ccccccCCC-------ccEEEeCEEEEcCCcchHHHHH----hCCCC----cceeEEEEEEEeCChhhccccCCeEEEEe
Confidence 100 00121 2479999999999999999888 45432 2344566655555432 22333333333
Q ss_pred ccCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCee
Q psy14496 250 GWPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEF 329 (561)
Q Consensus 250 ~~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (561)
+... ...++.|+||.++ .+++|...... .....+.++.+.. .+...+.+++.+......+|.. ..+++
T Consensus 239 g~~~--~p~~Y~WifP~g~-~~~VG~g~~~~----~~~~~~~~~~l~~--~~~~~l~~~~~~~~~~~~ip~~---~~~~~ 306 (450)
T PLN00093 239 GDDV--SPDFYGWVFPKCD-HVAVGTGTVVN----KPAIKKYQRATRN--RAKDKIAGGKIIRVEAHPIPEH---PRPRR 306 (450)
T ss_pred CCCC--CCCceEEEEECCC-cEEEEEEEccC----CCChHHHHHHHHH--HhhhhcCCCeEEEEEEEEcccc---cccce
Confidence 3222 2345689999874 56788753221 1123333333321 1223344556666655666652 35678
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC--Cccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN--KFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 330 ~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~--~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
..+|++|+|||||.++|++|+|++.||.+|.+||+.+.+.+..++ .+.. |+.|++.|++.+ .++++....++++|
T Consensus 307 ~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~-g~~~~~~~~l~~~~ 384 (450)
T PLN00093 307 VRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKY-WPTYKVLDILQKVF 384 (450)
T ss_pred eCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999886542 2233 999999998774 67777777666666
No 6
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.98 E-value=4.2e-30 Score=264.27 Aligned_cols=340 Identities=17% Similarity=0.174 Sum_probs=197.7
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC-CCCCceeecceeChhhHHhhcccccc-CCccccccchh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS-ELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIEE 98 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~-~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~~ 98 (561)
+.+||+||||||+||++|+.|++. |++|+|||+.+ .... ...+..+.+.+++-+ ..+.. ...........
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~------G~~V~l~E~~~~~~~~-~~r~~~l~~~~~~~L-~~lG~~~~i~~~~~~~~ 72 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARA------GLDVTLLERAPRELLE-RGRGIALSPNALRAL-ERLGLWDRLEALGVPPL 72 (387)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhC------CCcEEEEccCcccccc-CceeeeecHhHHHHH-HHcCChhhhhhccCCce
Confidence 468999999999999999999999 99999999982 2211 224566777766533 22221 11111111111
Q ss_pred hhhhhcCCC--CcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14496 99 RFLFLSSKK--SYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 99 ~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~g-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
........+ .+.++..... .....+.+.+..|.+.|.+++.+.+ +++++++.|+.+..+++ .+. |.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~---- 143 (387)
T COG0654 73 HVMVVDDGGRRLLIFDAAELG---RGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLS---- 143 (387)
T ss_pred eeEEEecCCceeEEecccccC---CCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEc----
Confidence 111112111 1112211111 1344889999999999999998865 99999999999988643 333 5542
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCcccc-ceeEEEEeeCCCccCCCcEEEEeccCCC
Q psy14496 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYS-LGIKELWTINPKLHKKGLVIHTIGWPLD 254 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 254 (561)
. +|.+++||+||+|||.+|.+|+. .+..... ...|. ..+......+ ....+.....+
T Consensus 144 ---------~-dG~~~~a~llVgADG~~S~vR~~----~~~~~~~-~~~y~~~~l~~~~~~~--~~~~~~~~~~~----- 201 (387)
T COG0654 144 ---------F-DGETLDADLLVGADGANSAVRRA----AGIAEFS-GRDYGQTALVANVEPE--EPHEGRAGERF----- 201 (387)
T ss_pred ---------C-CCcEEecCEEEECCCCchHHHHh----cCCCCcc-CCCCCceEEEEEeecC--CCCCCeEEEEe-----
Confidence 1 46689999999999999999888 5522211 11121 1111112221 11222232222
Q ss_pred CCCCceEEEEEcCCCeEEEEEEecCCC--CCCCCChHHHHHHhh-hChhHHHhhcCCeeeeecc-eeeccCCCccCCeee
Q psy14496 255 YKTYGGGFLYHMENNQISIGYIISLDY--KNPYLSPFEEFQRYK-THPKICKILKGGKRISYGA-RTITTGGLQSLPEFI 330 (561)
Q Consensus 255 ~~~~g~~~~~~~~~~~~~ig~~~~~~~--~~~~~~~~~~~~~~~-~~p~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 330 (561)
...+..-++|..++..++.+...... ...........+.+. ..+.... + +....... ..+|.. .....+|.
T Consensus 202 -~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~pl~-~~~a~~~~ 276 (387)
T COG0654 202 -THAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP-L--GRVTLVSSRSAFPLS-LRVAERYR 276 (387)
T ss_pred -cCCCceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc-c--ceEEEcccccccccc-chhhhhee
Confidence 22223346687755555555543221 111112221111111 0111100 0 11111111 112211 12234677
Q ss_pred cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 331 FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 331 ~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
.+|++|+|||||.++|+.|||+|+|++|+..||+.|.+....+.....|+.|+++++.. +.+.+..++.+...|
T Consensus 277 ~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~ 350 (387)
T COG0654 277 RGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPR-AEAIQKLSRALGRLF 350 (387)
T ss_pred cCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhH-HHHHHHHHHHHhhhh
Confidence 79999999999999999999999999999999999999876433323399999999876 556666666555555
No 7
>PRK07045 putative monooxygenase; Reviewed
Probab=99.98 E-value=6.2e-30 Score=263.94 Aligned_cols=342 Identities=13% Similarity=0.145 Sum_probs=196.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhh--ccccccCCcccc-ccc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL--FPKEKLNKLFNT-PVI 96 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l--~~~~~~~~~~~~-~~~ 96 (561)
+.++||+|||||||||++|+.|++. |++|+|+|+.+.+.... .+..+.+.++.-+ ++.+. ..... ...
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~~-~~~~l~~~~~~~L~~lGl~~--~~~~~~~~~ 73 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGAR------GHSVTVVERAARNRAQN-GADLLKPSGIGVVRAMGLLD--DVFAAGGLR 73 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhc------CCcEEEEeCCCcccCCC-cccccCccHHHHHHHcCCHH--HHHhccccc
Confidence 4568999999999999999999999 99999999998764321 2234666655422 22221 00000 000
Q ss_pred hhhhhhhcCCCCcccCCCCCCceeecCC-cEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14496 97 EERFLFLSSKKSYKIPSWILPICFKNHG-NYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
...+.+........ ...++.. ...+ .+.++|..|.+.|.+.+.+ .|++++++++|+++..++++.++.|++.
T Consensus 74 ~~~~~~~~~g~~~~--~~~~~~~-~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~--- 147 (388)
T PRK07045 74 RDAMRLYHDKELIA--SLDYRSA-SALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLS--- 147 (388)
T ss_pred ccceEEecCCcEEE--EecCCcc-ccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeC---
Confidence 11111111111111 0111110 0112 3468899999999999865 6899999999999988766655556553
Q ss_pred cccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCC--CCccccceeEEEEeeCCCccCCCcEEEEeccC
Q psy14496 175 INKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKK--DPQTYSLGIKELWTINPKLHKKGLVIHTIGWP 252 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 252 (561)
+|.++++|+||+|||.+|.+|+.+. +..... .......+. +..... . .......+ .
T Consensus 148 ------------~g~~~~~~~vIgADG~~S~vR~~~~---~~~~~~~~~~~~~~~~~---~~~~~~-~-~~~~~~~~-~- 205 (388)
T PRK07045 148 ------------DGERVAPTVLVGADGARSMIRDDVL---RMPAERVPYATPMAFGT---IALTDS-V-RECNRLYV-D- 205 (388)
T ss_pred ------------CCCEEECCEEEECCCCChHHHHHhh---CCCcccCCCCcceeEEE---EeccCC-c-cccceEEE-c-
Confidence 3568999999999999999988642 332211 111111221 111111 1 11111111 1
Q ss_pred CCCCCCceEEEEEcCCCeEEEEEEecCCCCCCC---CChHHHHHHhhhC--hhHHHhhcCCee-eeecceeeccCCCccC
Q psy14496 253 LDYKTYGGGFLYHMENNQISIGYIISLDYKNPY---LSPFEEFQRYKTH--PKICKILKGGKR-ISYGARTITTGGLQSL 326 (561)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~~---~~~~~~~~~~~~~--p~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 326 (561)
...+..|++|.+++...+.+....+..... ....+..+.+... +.+.+.+..-.. ..+. ..+.. ....
T Consensus 206 ---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~ 279 (388)
T PRK07045 206 ---SNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFP--LIPLG-RMNL 279 (388)
T ss_pred ---CCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccc--eeecC-cccc
Confidence 123335678887777666665443221111 1111211222111 222222211100 0110 11111 1235
Q ss_pred CeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCcc-chhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 327 PEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFN-KLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 327 ~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~-~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
++|+.+|++|+|||||.++|+.|||+|+||+||..||+.|...+....... .|+.|+++|+.. ....+..++.+...+
T Consensus 280 ~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~ 358 (388)
T PRK07045 280 DRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPV-NEAVISYGHALATTY 358 (388)
T ss_pred ccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhH-HHHHHhhhHHHhhhc
Confidence 678889999999999999999999999999999999999988764332223 399999998865 344455555555554
No 8
>PRK08013 oxidoreductase; Provisional
Probab=99.97 E-value=8.5e-30 Score=263.47 Aligned_cols=339 Identities=15% Similarity=0.107 Sum_probs=191.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-----eecceeChhhHHhhccccc-cCCcccc-c
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-----LSGAIIDPRSIFELFPKEK-LNKLFNT-P 94 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-----~~G~~~~~~~l~~l~~~~~-~~~~~~~-~ 94 (561)
.+||+||||||+||++|+.|++. |++|+|||+.+.+.... ..+..+++.+++ ++..+. .+..... .
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~------G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~-~L~~lGl~~~~~~~~~ 75 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS------GLRVAVLEQRVPEPLAADAPPALRVSAINAASEK-LLTRLGVWQDILARRA 75 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC------CCEEEEEeCCCCcccccCCCCCceeeecchhHHH-HHHHcCCchhhhhhcC
Confidence 58999999999999999999999 99999999998643211 122235665543 223322 1110000 0
Q ss_pred cchhhhhhhcCC--CCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14496 95 VIEERFLFLSSK--KSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 95 ~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
.....+.+.+.. ....+...... .....+.+.|..|.+.|.+.+.+. |++++++++|+++++++++ +.|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~- 149 (400)
T PRK08013 76 SCYHGMEVWDKDSFGRIAFDDQSMG---YSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTL- 149 (400)
T ss_pred ccccEEEEEeCCCCceEEEcccccC---CCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEE-
Confidence 111112222211 11111100000 011257899999999999999884 8999999999999876443 23333
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEecc
Q psy14496 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGW 251 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (561)
++|.++++|+||+|||.+|.+|+. ++++........ ..+...+... ....+...+.+
T Consensus 150 --------------~~g~~i~a~lvVgADG~~S~vR~~----~~~~~~~~~~~~-~~~~~~v~~~--~~~~~~~~~~~-- 206 (400)
T PRK08013 150 --------------KDGSMLTARLVVGADGANSWLRNK----ADIPLTFWDYQH-HALVATIRTE--EPHDAVARQVF-- 206 (400)
T ss_pred --------------cCCCEEEeeEEEEeCCCCcHHHHH----cCCCccccccCc-EEEEEEEecc--CCCCCEEEEEE--
Confidence 346689999999999999999988 555542211111 1111112211 11222222222
Q ss_pred CCCCCCCceEEEEEcCCC-eEEEEEEecCCCCC-CCCChHHHHH-HhhhChhHHHhhcCCeeeeecceeeccCCCccCCe
Q psy14496 252 PLDYKTYGGGFLYHMENN-QISIGYIISLDYKN-PYLSPFEEFQ-RYKTHPKICKILKGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 252 p~~~~~~g~~~~~~~~~~-~~~ig~~~~~~~~~-~~~~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
...+..+++|..++ ..++.+....+... ......+.+. .+.. .+.+.+...+.... ...++... ...++
T Consensus 207 ----~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~~~~~~-~~~~~l~~-~~~~~ 278 (400)
T PRK08013 207 ----HGDGILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAI--AFDNRLGLCELESE-RQVFPLTG-RYARQ 278 (400)
T ss_pred ----cCCCCEEEEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHH--HHhHhhCceEecCC-ccEEecce-eeccc
Confidence 12233446677543 34555544321100 0000111121 1110 01111211111110 00111111 12568
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC-Ccc-c-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN-KFN-K-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 329 ~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~-~~~-~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|..+|++|+|||||.++|+.|||+|+||+||..||+.|...+..+. ... . |+.|+++++.. +...+...+.+.++|
T Consensus 279 ~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~l~ 357 (400)
T PRK08013 279 FAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHS-AALMLAGMQGFRDLF 357 (400)
T ss_pred ccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999988764443 222 3 99999987754 445455555555555
No 9
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.97 E-value=2.3e-29 Score=259.14 Aligned_cols=328 Identities=20% Similarity=0.296 Sum_probs=202.0
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC-CCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG-SELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~-~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
|||+||||||||+++|+.|++. |++|+|+|+. +.+ ..+|+.+.+..++++ +... ....... ....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~------G~~V~l~E~~~~~~---~~cg~~i~~~~l~~l-~i~~--~~~~~~~--~~~~ 66 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA------GIETILLERALSNI---KPCGGAIPPCLIEEF-DIPD--SLIDRRV--TQMR 66 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCCCCc---CcCcCCcCHhhhhhc-CCch--HHHhhhc--ceeE
Confidence 7999999999999999999999 9999999998 322 236666666655443 1110 0000011 1111
Q ss_pred hhcCCCC-cccCCCCCCceeecCCcE--EeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccC
Q psy14496 102 FLSSKKS-YKIPSWILPICFKNHGNY--IISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKE 178 (561)
Q Consensus 102 ~~~~~~~-~~~~~~~~p~~~~~~~~~--~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~ 178 (561)
+.+..+. ... ..+. ...| .++|..|+++|.+.+.+.|++++.+ .|+++..++++ +.|.+.+.....+
T Consensus 67 ~~~~~~~~~~~---~~~~----~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~ 136 (388)
T TIGR02023 67 MISPSRVPIKV---TIPS----EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAG 136 (388)
T ss_pred EEcCCCceeee---ccCC----CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCC
Confidence 2222111 111 1111 1223 5999999999999999999999766 58888765332 3454432100011
Q ss_pred CceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCC--ccCCCcEEEEeccCCCCC
Q psy14496 179 GIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPK--LHKKGLVIHTIGWPLDYK 256 (561)
Q Consensus 179 g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~ 256 (561)
|+ ..+++||+||+|||.+|.+++. +++.. +..+..+++..+..+.. .+.++.....++.+. .
T Consensus 137 ~~-------~~~i~a~~VI~AdG~~S~v~r~----lg~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 200 (388)
T TIGR02023 137 GE-------KGSVEADVVIGADGANSPVAKE----LGLPK---NLPRVIAYQERIKLPDDKMAYYEELADVYYGGEV--S 200 (388)
T ss_pred Cc-------ceEEEeCEEEECCCCCcHHHHH----cCCCC---CCcEEEEEEEEecCCchhcccCCCeEEEEECCCc--C
Confidence 11 2479999999999999999887 55543 12233455555544331 123333322333322 2
Q ss_pred CCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEE
Q psy14496 257 TYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAF 336 (561)
Q Consensus 257 ~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 336 (561)
..++.|++|.+ +.+.+|...... .....+.++.+..+.. +...+.+......+|. ...+++..+++++
T Consensus 201 p~~y~wv~P~~-~~~~vg~~~~~~----~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~ip~---~~~~~~~~~~v~l 268 (388)
T TIGR02023 201 PDFYGWVFPKG-DHIAVGTGTGTH----GFDAKQLQANLRRRAG----LDGGQTIRREAAPIPM---KPRPRWDFGRAML 268 (388)
T ss_pred CCceEEEeeCC-CeeEEeEEECCC----CCCHHHHHHHHHHhhC----CCCceEeeeeeEeccc---cccccccCCCEEE
Confidence 23568999986 567787754211 1223333444433211 3333444443344443 2356777899999
Q ss_pred EecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchh
Q psy14496 337 IGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPA 404 (561)
Q Consensus 337 vGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~ 404 (561)
+|||||.++|++|+|+++||.+|.++|+.|.+++..++ ...|+.|++.|++.+ .+++...+....+
T Consensus 269 vGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~-~~~L~~Y~~~~~~~~-~~~~~~~~~~~~~ 334 (388)
T TIGR02023 269 VGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGD-ATDLRHYERKFMKLY-GTTFRVLRVLQMV 334 (388)
T ss_pred EeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987543 233999999999774 4555544444433
No 10
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=3.1e-29 Score=258.04 Aligned_cols=337 Identities=17% Similarity=0.239 Sum_probs=206.2
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
+||+||||||||+++|+.|++. |++|+|+||....+ .. +|+.+.+..+.++ +.+. ....... ..+.+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~------G~~V~llE~~~~~~-~~-cg~~i~~~~l~~~-g~~~--~~~~~~i--~~~~~ 67 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA------GIQTFLLERKPDNA-KP-CGGAIPLCMVDEF-ALPR--DIIDRRV--TKMKM 67 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCcEEEEecCCCCC-CC-ccccccHhhHhhc-cCch--hHHHhhh--ceeEE
Confidence 6999999999999999999999 99999999986543 22 4555555544432 1111 0000000 01111
Q ss_pred hcCCCCcccCCCCCCceeecCC-cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEc-CCCCEEEEEecccc-cccCC
Q psy14496 103 LSSKKSYKIPSWILPICFKNHG-NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYD-SKNNVCGIATNNFG-INKEG 179 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~-~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~-~~g~v~~V~~~~~~-~~~~g 179 (561)
.++.+ .... +.......+ .+.++|..|+++|.+.+.+.|++++.++ +.++... +.+..++|+..... ....|
T Consensus 68 ~~p~~-~~~~---~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g 142 (398)
T TIGR02028 68 ISPSN-IAVD---IGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSG 142 (398)
T ss_pred ecCCc-eEEE---eccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCC
Confidence 11111 1110 000000111 2469999999999999999999998885 6666432 12334455432110 00012
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCc--cCCCcEEEEeccCCCCCC
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKL--HKKGLVIHTIGWPLDYKT 257 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~ 257 (561)
+ ..+++||+||+|||.+|.+++. +++.. ..+...+...++.+... +........++... ..
T Consensus 143 ~-------~~~i~a~~VIgADG~~S~v~~~----~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~p 205 (398)
T TIGR02028 143 T-------RCTLEVDAVIGADGANSRVAKE----IDAGD----YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDV--SP 205 (398)
T ss_pred C-------ccEEEeCEEEECCCcchHHHHH----hCCCC----cceEEEEEEEeeCChhhcccCCCeEEEEeCCCC--CC
Confidence 1 2479999999999999999888 45432 12334454444444321 22233322222111 23
Q ss_pred CceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEE
Q psy14496 258 YGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFI 337 (561)
Q Consensus 258 ~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lv 337 (561)
.++.|+||.++ .+.+|...... . ...+.+..+.... ....+.+++.++.....+|.+ ..+++..+|++++
T Consensus 206 ~gY~WifP~~~-~~~VG~g~~~~----~-~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ip~~---~~~~~~~~~~llv 275 (398)
T TIGR02028 206 DFYGWVFPKCD-HVAVGTGTVAA----K-PEIKRLQSGIRAR-AAGKVAGGRIIRVEAHPIPEH---PRPRRVVGRVALV 275 (398)
T ss_pred CceEEEEECCC-eEEEEEEeCCC----C-ccHHHHHHhhhhh-hhhccCCCcEEEEEEEecccc---ccccEECCCEEEE
Confidence 45689999874 56788754211 1 1223333322111 122233455555555566653 2457788999999
Q ss_pred ecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC--Cccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 338 GCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN--KFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 338 GDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~--~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|||||+++|++|+|+++||.+|.+||+.+.+++..++ .+.. |+.|++.|++. +.++++....+++++
T Consensus 276 GDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~-~~~~~~~~~~~~~~~ 345 (398)
T TIGR02028 276 GDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKE-YRPTYRVLDLLQRVF 345 (398)
T ss_pred EcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887654 2334 99999999876 367777777777666
No 11
>PRK08244 hypothetical protein; Provisional
Probab=99.97 E-value=4.6e-29 Score=264.95 Aligned_cols=325 Identities=15% Similarity=0.163 Sum_probs=188.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccchhh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIEER 99 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~ 99 (561)
|++||+||||||+||++|+.|++. |++|+||||.+.+.. ...+..+.+++++-+ ..+. .+...........
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viEr~~~~~~-~~ra~~l~~~~~e~l-~~lGl~~~l~~~~~~~~~ 72 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALA------GVKTCVIERLKETVP-YSKALTLHPRTLEIL-DMRGLLERFLEKGRKLPS 72 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCC-CcceeEecHHHHHHH-HhcCcHHHHHhhcccccc
Confidence 569999999999999999999999 999999999987532 224556777765532 3322 0000000000000
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
..+........+.. .+. .....+.+++..+++.|.+.+.+.|++++++++++++..++++ +.|.+.+ .+|
T Consensus 73 ~~~~~~~~~~~~~~--~~~--~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~----~~g 142 (493)
T PRK08244 73 GHFAGLDTRLDFSA--LDT--SSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG--VEVVVRG----PDG 142 (493)
T ss_pred eEEecccccCCccc--CCC--CCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe--EEEEEEe----CCc
Confidence 11111111111110 110 0122567899999999999998899999999999999876443 2233321 111
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCCc
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYG 259 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 259 (561)
..++++|+||+|||.+|.+|+. +|++.......+ .++...+..... ........+ ...+
T Consensus 143 --------~~~i~a~~vVgADG~~S~vR~~----lgi~~~g~~~~~-~~~~~~~~~~~~--~~~~~~~~~------~~~g 201 (493)
T PRK08244 143 --------LRTLTSSYVVGADGAGSIVRKQ----AGIAFPGTDATF-TAMLGDVVLKDP--PPSSVLSLC------TREG 201 (493)
T ss_pred --------cEEEEeCEEEECCCCChHHHHh----cCCCccCCCcce-EEEEEEEEecCC--CCcceeEEE------eCCc
Confidence 1479999999999999999877 565542222111 122211222211 111122221 2334
Q ss_pred eEEEEEcCCCeEEEEEEecCCCC---CCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEE
Q psy14496 260 GGFLYHMENNQISIGYIISLDYK---NPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAF 336 (561)
Q Consensus 260 ~~~~~~~~~~~~~ig~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 336 (561)
..+++|.+++...+.+....... ....+..+..+.+... +...+...+..... .++. .....++|..+|++|
T Consensus 202 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~--~~~~-~~~~a~~~~~gRv~L 276 (493)
T PRK08244 202 GVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRI--CGTDFGLNDPVWMS--RFGN-ATRQAERYRSGRIFL 276 (493)
T ss_pred eEEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHh--hCCCCCcCCeeEEE--eccc-ceeeHhhhccCcEEE
Confidence 56788998887776554322111 1112222222222111 00001000111000 0110 012245777899999
Q ss_pred EecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhc
Q psy14496 337 IGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQAS 389 (561)
Q Consensus 337 vGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~ 389 (561)
+|||||.++|+.|||+|+||+||..||+.|+..+.+......|+.|+++++..
T Consensus 277 ~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~ 329 (493)
T PRK08244 277 AGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPV 329 (493)
T ss_pred eecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHH
Confidence 99999999999999999999999999999999885433322399999988864
No 12
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.97 E-value=2.4e-29 Score=269.44 Aligned_cols=342 Identities=14% Similarity=0.113 Sum_probs=195.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccchh
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIEE 98 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~~ 98 (561)
++.+||+||||||+||++|+.|++. |++|+||||.+.+.... .+..+.+++++.+ ..+. .+..........
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~------G~~v~v~Er~~~~~~~~-ra~~l~~~~~~~L-~~lGl~~~l~~~~~~~~ 79 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY------GVRVLVLERWPTLYDLP-RAVGIDDEALRVL-QAIGLADEVLPHTTPNH 79 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCC-ceeeeCHHHHHHH-HHcCChhHHHhhcccCC
Confidence 5679999999999999999999999 99999999998764322 2345666655422 2222 000000111111
Q ss_pred hhhhhcCCCCcccCCCCCCc--eeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14496 99 RFLFLSSKKSYKIPSWILPI--CFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
.+.+.+..+..... +..+. .......+.+++..+++.|.+.+.+ .|++++++++|+++++++++ +.|.+.+
T Consensus 80 ~~~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~--- 153 (538)
T PRK06183 80 GMRFLDAKGRCLAE-IARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTD--- 153 (538)
T ss_pred ceEEEcCCCCEEEE-EcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEc---
Confidence 22232222211110 00000 0001124568899999999999877 49999999999999886554 3344421
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCC--CccccceeEEEEeeCCCccCCCcEEEEeccCC
Q psy14496 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKD--PQTYSLGIKELWTINPKLHKKGLVIHTIGWPL 253 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 253 (561)
.+|+ ..++++|+||+|||.+|.+|+. +++..... ...+ +.+. ................+
T Consensus 154 -~~G~-------~~~i~ad~vVgADG~~S~vR~~----lg~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~---- 214 (538)
T PRK06183 154 -ADGQ-------RETVRARYVVGCDGANSFVRRT----LGVPFEDLTFPERW-LVVD--VLIANDPLGGPHTYQYC---- 214 (538)
T ss_pred -CCCC-------EEEEEEEEEEecCCCchhHHHH----cCCeeeCCCccceE-EEEE--EecccCccCCCceEEEE----
Confidence 1221 1479999999999999999988 45443211 1111 1111 11111111111111111
Q ss_pred CCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhh-c--CCeeeeecceeeccCCCccCCeee
Q psy14496 254 DYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKIL-K--GGKRISYGARTITTGGLQSLPEFI 330 (561)
Q Consensus 254 ~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l-~--~~~~~~~~~~~~~~~~~~~~~~~~ 330 (561)
...+...++|..++...+.+....+.........+.+.++. ..+. . ..+........+ .....++|.
T Consensus 215 --~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~ 284 (538)
T PRK06183 215 --DPARPYTSVRLPHGRRRWEFMLLPGETEEQLASPENVWRLL-----APWGPTPDDAELIRHAVYTF---HARVADRWR 284 (538)
T ss_pred --CCCCCEEEEEcCCCeEEEEEEeCCCCChhhcCCHHHHHHHH-----HhhCCCCcceEEEEEEeeeE---ccEEhhhhc
Confidence 12223345576666655544432221111111112222221 1110 0 011111111111 012245788
Q ss_pred cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 331 FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 331 ~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
.+||+|+|||||.++|+.|||+|+||+||..||+.|...+.+......|+.|+++|+.. +.+.+..++.+.+++
T Consensus 285 ~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~-~~~~~~~s~~~~~~~ 358 (538)
T PRK06183 285 SGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPH-ARAMIDLAVRLGRVI 358 (538)
T ss_pred cCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHhhhhc
Confidence 89999999999999999999999999999999999987765433323399999999876 566677777666665
No 13
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=5.1e-29 Score=247.61 Aligned_cols=294 Identities=20% Similarity=0.260 Sum_probs=190.1
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
|||+|||||||||++|+.|++. |++|+|+||.+.++. ..+|..+.++.+..+ ..+.. .... ......+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~------g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l-~~~~~-~~~~---~~~~~~~ 68 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK------GLRVLLLEKKSFPRY-KPCGGALSPRVLEEL-DLPLE-LIVN---LVRGARF 68 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCc-ccccCccCHhHHHHh-cCCch-hhhh---heeeEEE
Confidence 6999999999999999999999 999999999988765 335666677665543 11110 0000 0011111
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
....+.. .. ...+ ....+.++|..|.+.|.+.+.+.|++++++++|+++..++++. .+.+.+
T Consensus 69 ~~~~~~~-~~-~~~~----~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~--~~~~~~---------- 130 (295)
T TIGR02032 69 FSPNGDS-VE-IPIE----TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRV--VVIVRG---------- 130 (295)
T ss_pred EcCCCcE-EE-eccC----CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEE--EEEEcC----------
Confidence 1111110 00 0011 1336789999999999999999999999999999997754432 233311
Q ss_pred cccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCCceEE
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYGGGF 262 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~ 262 (561)
++.++++|+||+|+|.+|.++++ +++... +.....++...+..+.....+........+.. ...+..|
T Consensus 131 ----~~~~~~a~~vv~a~G~~s~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 198 (295)
T TIGR02032 131 ----GEGTVTAKIVIGADGSRSIVAKK----LGLRKE--PRELGVAARAEVEMPDEEVDEDFVEVYIDRGI--SPGGYGW 198 (295)
T ss_pred ----ccEEEEeCEEEECCCcchHHHHh----cCCCCC--CcceeeEEEEEEecCCcccCcceEEEEcCCCc--CCCceEE
Confidence 13579999999999999998776 555432 22333454444444432223332222222211 1235688
Q ss_pred EEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhh-hChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEEecCC
Q psy14496 263 LYHMENNQISIGYIISLDYKNPYLSPFEEFQRYK-THPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFIGCNA 341 (561)
Q Consensus 263 ~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa 341 (561)
++|.+++.+++++...... +..+..+.++++. ..|. +...+..+.....++... ..+++..+|++++||||
T Consensus 199 ~~P~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~liGDAA 270 (295)
T TIGR02032 199 VFPKGDGTANVGVGSRSAE--EGEDLKKYLKDFLARRPE----LKDAETVEVIGAPIPIGR--PDDKTVRGNVLLVGDAA 270 (295)
T ss_pred EEeCCCCeEEEeeeeccCC--CCCCHHHHHHHHHHhCcc----cccCcEEeeeceeeccCC--CCCccccCCEEEEeccc
Confidence 9999888899988765332 3445667777665 3333 334444443333344322 35577889999999999
Q ss_pred ccCCCcccccchHHHHHHHHHHHHH
Q psy14496 342 GFMNVSRIKGIHTSIKSGILVADSI 366 (561)
Q Consensus 342 ~~~~P~~g~G~~~Ai~~a~~lA~~l 366 (561)
|+++|+.|+|+++||+||..||+.|
T Consensus 271 ~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 271 GHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999864
No 14
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=1.8e-29 Score=258.67 Aligned_cols=330 Identities=15% Similarity=0.149 Sum_probs=189.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc---eeecceeChhhHHhh--ccccccCCccccccch
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH---ILSGAIIDPRSIFEL--FPKEKLNKLFNTPVIE 97 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~---~~~G~~~~~~~l~~l--~~~~~~~~~~~~~~~~ 97 (561)
+||+||||||+|+++|+.|++. |++|+|+|+.+..... ...+..+.+.++.-+ ++.|..-.......
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~-- 73 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK------GIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEM-- 73 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC------CCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCC--
Confidence 7999999999999999999999 9999999987542211 123455677664422 33333000011111
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14496 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~g-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
..+.+.+..+..... ++.......+|.++|..|.+.|.+++.+.+ ++++++++++++..++++ +.|.+
T Consensus 74 ~~~~~~~~~g~~~~~---~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~------ 142 (374)
T PRK06617 74 QDIYVVDNKASEILD---LRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKF------ 142 (374)
T ss_pred cEEEEEECCCceEEE---ecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEE------
Confidence 112222222111111 111011123689999999999999998864 999999999999875443 23444
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCC
Q psy14496 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYK 256 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 256 (561)
+++ ++++|+||+|||.+|.+|+. ++......+ |..++. +.++......+..+..+ .
T Consensus 143 ---------~~~-~~~adlvIgADG~~S~vR~~----l~~~~~~~~--y~~~~~--~~v~~~~~~~~~~~~~~------~ 198 (374)
T PRK06617 143 ---------DDK-QIKCNLLIICDGANSKVRSH----YFANEIEKP--YQTALT--FNIKHEKPHENCAMEHF------L 198 (374)
T ss_pred ---------cCC-EEeeCEEEEeCCCCchhHHh----cCCCccccc--CCeEEE--EEEeccCCCCCEEEEEe------c
Confidence 234 89999999999999999887 444432111 112222 22222212222222222 1
Q ss_pred CCceEEEEEcCCCe-EEEEEEecCCCCCC-CCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCE
Q psy14496 257 TYGGGFLYHMENNQ-ISIGYIISLDYKNP-YLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGG 334 (561)
Q Consensus 257 ~~g~~~~~~~~~~~-~~ig~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 334 (561)
..|..+++|..++. .++.+....+.... ...+.+.+..... +.+.+.+..- ........++... ...++|..+|+
T Consensus 199 ~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i-~~~~~~~~~~l~~-~~~~~~~~grv 275 (374)
T PRK06617 199 PLGPFALLPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQ-RNAGNSLGKI-TIDSEISSFPLKA-RIANRYFHNRI 275 (374)
T ss_pred CCCCEEEeECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHH-HhhchhcCce-eeccceeEEEeee-eeccceecCCE
Confidence 12235677887664 34444332110000 0001122221111 1111112110 0111111122211 13568899999
Q ss_pred EEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhhh
Q psy14496 335 AFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMK 406 (561)
Q Consensus 335 ~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~ 406 (561)
+|+|||||.++|+.|||+|+||+|+..||+.|.. ...|++|++.|+.. ....+..++.+.++|.
T Consensus 276 ~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~-------~~~L~~Ye~~R~~~-~~~~~~~t~~l~~~f~ 339 (374)
T PRK06617 276 VLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN-------NGTLQEYQKLRQED-NFIMYKLTDELNNIFS 339 (374)
T ss_pred EEEEcccccCCCCccccHHHHHHHHHHHHHHHcC-------cchHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999988721 12499999999876 5666777777776663
No 15
>PRK06185 hypothetical protein; Provisional
Probab=99.97 E-value=5.3e-29 Score=258.89 Aligned_cols=345 Identities=15% Similarity=0.195 Sum_probs=200.6
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhh--ccccc-cCCcccccc
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL--FPKEK-LNKLFNTPV 95 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l--~~~~~-~~~~~~~~~ 95 (561)
.++++||+||||||+|+++|+.|++. |++|+|||+.+..... ..|..+.+.++.-+ ++.|. .........
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~------G~~v~liE~~~~~~~~-~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~ 75 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARA------GVDVTVLEKHADFLRD-FRGDTVHPSTLELMDELGLLERFLELPHQKV 75 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCcc-ccCceeChhHHHHHHHcCChhHHhhccccee
Confidence 35779999999999999999999999 9999999998654221 13445565543322 23232 000000011
Q ss_pred chhhhhhhcCCCCcc-cCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEeccc
Q psy14496 96 IEERFLFLSSKKSYK-IPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNF 173 (561)
Q Consensus 96 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~ 173 (561)
..+.+........ ......+. .....+.+.+..+.+.|.+.+.+ .|++++++++|+++..+ ++.+.+|.+..
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~- 149 (407)
T PRK06185 76 --RTLRFEIGGRTVTLADFSRLPT--PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRART- 149 (407)
T ss_pred --eeEEEEECCeEEEecchhhcCC--CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEc-
Confidence 1122211111111 11000110 01225678999999999998876 48999999999999875 45555565531
Q ss_pred ccccCCceecccccC-eEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccC
Q psy14496 174 GINKEGIIKKNFQLG-MELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWP 252 (561)
Q Consensus 174 ~~~~~g~~~~~f~~g-~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 252 (561)
.+| .++++|+||+|||.+|.+|+. +++.....+... . + ....++..........+.+
T Consensus 150 ------------~~g~~~i~a~~vI~AdG~~S~vr~~----~gi~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~--- 207 (407)
T PRK06185 150 ------------PDGPGEIRADLVVGADGRHSRVRAL----AGLEVREFGAPM-D-V-LWFRLPREPDDPESLMGRF--- 207 (407)
T ss_pred ------------CCCcEEEEeCEEEECCCCchHHHHH----cCCCccccCCCc-e-e-EEEecCCCCCCCcccceEe---
Confidence 123 379999999999999998877 566543222111 1 1 1122222111111122211
Q ss_pred CCCCCCceEEEEEcCCCeEEEEEEecCCCCCC-CCChHHHH-HHhh-hChhHHHhhcCCeeeeecceeeccCCCccCCee
Q psy14496 253 LDYKTYGGGFLYHMENNQISIGYIISLDYKNP-YLSPFEEF-QRYK-THPKICKILKGGKRISYGARTITTGGLQSLPEF 329 (561)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~-~~~~~~~~-~~~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (561)
...+..+++|.+ +.+++++..+.+.... .....+.+ +.+. ..|.+.+.+...+... ....++. .....++|
T Consensus 208 ---~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~l-~~~~~~~~ 281 (407)
T PRK06185 208 ---GPGQGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWD-DVKLLDV-RVDRLRRW 281 (407)
T ss_pred ---cCCcEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCcc-ccEEEEE-eccccccc
Confidence 223345566876 6778887765433211 11111222 2222 2344444342211110 0111111 11235678
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 330 ~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
..+|++|+|||||.++|+.|||+|+||+|+..||+.|.+.+..++.... |+.|++.|+.. ....+...+.+.++|
T Consensus 282 ~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 357 (407)
T PRK06185 282 HRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFP-TRVTQALQRRIQRRL 357 (407)
T ss_pred cCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhH-HHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999999999988766544334 99999998865 334444444444433
No 16
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.97 E-value=3.8e-30 Score=262.67 Aligned_cols=331 Identities=20% Similarity=0.243 Sum_probs=179.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccc--cchh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTP--VIEE 98 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~--~~~~ 98 (561)
++||+|||||||||++|+.|++. |++|+||||.+.+.... .|..+.+.++.. +..+. ........ ....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~~~~~~~-~~~~l~~~~~~~-l~~lgl~~~~~~~~~~~~~~ 72 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA------GIDVTIIERRPDPRPKG-RGIGLSPNSLRI-LQRLGLLDEILARGSPHEVM 72 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT------TCEEEEEESSSSCCCSS-SSEEEEHHHHHH-HHHTTEHHHHHHHSEEECEE
T ss_pred CceEEEECCCHHHHHHHHHHHhc------ccccccchhcccccccc-cccccccccccc-cccccchhhhhhhcccccce
Confidence 48999999999999999999999 99999999998875433 456677776543 22222 00000000 0000
Q ss_pred hhhhhcC--CCCccc--C--CCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecc
Q psy14496 99 RFLFLSS--KKSYKI--P--SWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNN 172 (561)
Q Consensus 99 ~~~~~~~--~~~~~~--~--~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 172 (561)
...+... ...... + ...+.........+.+.|..|.+.|.+.+++.|++++++++++++..++++..+.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~- 151 (356)
T PF01494_consen 73 RIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDG- 151 (356)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEET-
T ss_pred eeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccc-
Confidence 0000000 000000 0 00000001123367899999999999999999999999999999987755432223221
Q ss_pred cccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEE-EeeCCCccCCC-cEEEEec
Q psy14496 173 FGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKEL-WTINPKLHKKG-LVIHTIG 250 (561)
Q Consensus 173 ~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 250 (561)
.+|+ ..+++||+||+|||++|.+|++ ++.........+..++... ........... ..++.
T Consensus 152 ----~~g~-------~~~i~adlvVgADG~~S~vR~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (356)
T PF01494_consen 152 ----EDGE-------EETIEADLVVGADGAHSKVRKQ----LGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYS-- 214 (356)
T ss_dssp ----CTCE-------EEEEEESEEEE-SGTT-HHHHH----TTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEE--
T ss_pred ----cCCc-------eeEEEEeeeecccCcccchhhh----ccccccCcccccccccccccccccccccccccccccc--
Confidence 1222 2479999999999999999988 4443211111111111111 11111111112 11111
Q ss_pred cCCCCCCCceEEEEEcCC-CeEEEEEEecCCCCCCCCCh----HHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCcc
Q psy14496 251 WPLDYKTYGGGFLYHMEN-NQISIGYIISLDYKNPYLSP----FEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQS 325 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~-~~~~ig~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 325 (561)
...++.+++|..+ +...+.+....+........ .+.++.+.. .+................++ ...
T Consensus 215 -----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~ 284 (356)
T PF01494_consen 215 -----PPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPE--IFGPDLLETEIDEISAWPIP---QRV 284 (356)
T ss_dssp -----ETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHH--HHHTCHHHHEEEEEEEEEEE---EEE
T ss_pred -----ccccceeEeeccCCccceEEEeeeccccccccccccccccccccccc--cccccccccccccccccccc---ccc
Confidence 2233346788766 33333333333322211111 111222211 11111100111111111111 112
Q ss_pred CCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhc
Q psy14496 326 LPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQAS 389 (561)
Q Consensus 326 ~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~ 389 (561)
.++|..+|++|+|||||.|+|+.|||+|+||+||..||+.|...+.+ ..... |+.|+++|++.
T Consensus 285 ~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g-~~~~~~l~~Y~~~r~~~ 348 (356)
T PF01494_consen 285 ADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKG-EASEEALKAYEQERRPR 348 (356)
T ss_dssp ESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred ccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHH
Confidence 44677899999999999999999999999999999999999998763 33344 99999999865
No 17
>PF05187 ETF_QO: Electron transfer flavoprotein-ubiquinone oxidoreductase; InterPro: IPR007859 Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64 kDa monomer [].; GO: 0004174 electron-transferring-flavoprotein dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2GMJ_B 2GMH_B.
Probab=99.97 E-value=1.3e-32 Score=218.86 Aligned_cols=109 Identities=57% Similarity=1.001 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHHHHhcCCCCccccCCCCccCCcccccCCCCCCCCCCCCccccccccceeccccccCCCCCCceEEcCC
Q psy14496 408 GLYIGMLIIGIDQILFSGKFPFTLHNINSDYTYLEPASKHIPIKYPNPDNKLTFDKLSSIYVSNINHDEDQPIHLILKNK 487 (561)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fd~~~~~~~~~~~~~~~~~~h~~~~~~ 487 (561)
|+|.|+++.++..++.+|+.||++.+...|+.+++++....+++||+||++||||+++|||+||++|+|||||||+|+|+
T Consensus 1 G~~~G~~~~g~~~~~~~g~~p~tl~~~~~D~~~l~~a~~~~~i~YpKpDg~ltFDklssv~~SgT~HeEdQP~HL~l~d~ 80 (110)
T PF05187_consen 1 GLYGGLAYSGLDQNLLKGRAPWTLKHKKPDHESLKPASKCKPIDYPKPDGKLTFDKLSSVYLSGTNHEEDQPCHLKLKDP 80 (110)
T ss_dssp HHHHHHHHHHHHTTTTTT--S------S-GGGG---GGGS---------SSSS--HHHHHHTTT-B--SSS--SEEESST
T ss_pred ChHHHHHHHHHHHHHccCCCCcccCCCCccHHHHhHHHhcccCCCCCCCCCCccccccceeccccCCCCCCCCeeEECCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccccccccCCeeEEEEee
Q psy14496 488 KIPIHINFSIYAGPEARYCPAGVYEFIIE 516 (561)
Q Consensus 488 ~~c~~~~~~~~~~~c~~~CP~~~~~~~~~ 516 (561)
++|+..|+++|.+||++||||+|||++++
T Consensus 81 ~i~~~~~~~~y~~P~qryCPAgVYE~v~~ 109 (110)
T PF05187_consen 81 EIPIEVNLPEYGGPEQRYCPAGVYEIVED 109 (110)
T ss_dssp THHHHTHHHHHS-THHHH-TTS-EEEE--
T ss_pred ChhhhhhhhhhcChhhhcCcceeEEEecc
Confidence 99999999999999999999999999864
No 18
>PRK07538 hypothetical protein; Provisional
Probab=99.97 E-value=1.3e-28 Score=255.76 Aligned_cols=337 Identities=16% Similarity=0.186 Sum_probs=187.1
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccchhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~ 101 (561)
.||+|||||||||++|+.|++. |++|+||||.+.++. ...|..+.|.++..+ ..+. .............+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~-~g~gi~l~p~~~~~L-~~lgl~~~l~~~~~~~~~~~ 72 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR------GIEVVVFEAAPELRP-LGVGINLLPHAVREL-AELGLLDALDAIGIRTRELA 72 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCcccc-cCcceeeCchHHHHH-HHCCCHHHHHhhCCCCcceE
Confidence 4899999999999999999999 999999999987642 224455666665532 2222 000000111111222
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CC-CEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MG-IDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~g-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+.+..+........-.........+.++|..|.+.|.+.+.+ .| ++++++++|+++..++++.++.+... .+|
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~-----~~g 147 (413)
T PRK07538 73 YFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDR-----AGG 147 (413)
T ss_pred EEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEecc-----CCC
Confidence 222221111100000000011225679999999999999866 46 57999999999987655533333221 111
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEee-CCCccCCCcEEEEeccCCCCCCC
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTI-NPKLHKKGLVIHTIGWPLDYKTY 258 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~ 258 (561)
++.+++||+||+|||.+|.+|+.+. .... +..+ .++..+... +...+..+......+. ..
T Consensus 148 -------~~~~~~adlvIgADG~~S~vR~~l~----~~~~--~~~~-~g~~~~~~~~~~~~~~~~~~~~~~g~-----~~ 208 (413)
T PRK07538 148 -------DLVSVRGDVLIGADGIHSAVRAQLY----PDEG--PPRW-NGVMMWRGVTEAPPFLTGRSMVMAGH-----LD 208 (413)
T ss_pred -------ccceEEeeEEEECCCCCHHHhhhhc----CCCC--CCcc-cceEEEEEeecCccccCCCcEEEEcC-----CC
Confidence 1358999999999999999988853 2211 1111 122111111 1111112211122111 11
Q ss_pred ceEEEEEcCCC-----eEEEEEEe--cCC---C-----CCCCCChHHHHHHhhhC----hhHHHhhcCC-eeeeecceee
Q psy14496 259 GGGFLYHMENN-----QISIGYII--SLD---Y-----KNPYLSPFEEFQRYKTH----PKICKILKGG-KRISYGARTI 318 (561)
Q Consensus 259 g~~~~~~~~~~-----~~~ig~~~--~~~---~-----~~~~~~~~~~~~~~~~~----p~~~~~l~~~-~~~~~~~~~~ 318 (561)
+..++||..+. ...+.++. ..+ . ........+.++.|... ..+.+++... ....+
T Consensus 209 ~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----- 283 (413)
T PRK07538 209 GKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEY----- 283 (413)
T ss_pred CEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeec-----
Confidence 22445565432 11222222 111 0 01112223333333321 1244555422 22222
Q ss_pred ccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhh
Q psy14496 319 TTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKA 398 (561)
Q Consensus 319 ~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~ 398 (561)
+......+++|+.+|++|+|||||.|+|+.|||+|+||+||..||+.|.+. ++....|+.|++.|+.. +.+.+..+
T Consensus 284 p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~~~~aL~~Ye~~R~~~-~~~~~~~s 359 (413)
T PRK07538 284 PMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH---GDPEAALAAYEAERRPA-TAQIVLAN 359 (413)
T ss_pred cccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhHH-HHHHHHHh
Confidence 222223467899999999999999999999999999999999999999763 33323499999999876 44555544
Q ss_pred hc
Q psy14496 399 RN 400 (561)
Q Consensus 399 ~~ 400 (561)
+.
T Consensus 360 ~~ 361 (413)
T PRK07538 360 RL 361 (413)
T ss_pred hh
Confidence 44
No 19
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=1.1e-28 Score=257.29 Aligned_cols=356 Identities=14% Similarity=0.116 Sum_probs=196.1
Q ss_pred cccccCCCCCCCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeChhhHHhhccccc
Q psy14496 8 NHSLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIIDPRSIFELFPKEK 86 (561)
Q Consensus 8 ~~~~~~~~~~~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~~~~l~~l~~~~~ 86 (561)
..+.+++.+-.....+||+|||||||||++|+.|++. |++|+||||++.+..... .+..+.+.+++-+ ..++
T Consensus 4 ~~~~~~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L-~~lG 76 (415)
T PRK07364 4 TAATSPTLPSTRSLTYDVAIVGGGIVGLTLAAALKDS------GLRIALIEAQPAEAAAAKGQAYALSLLSARIF-EGIG 76 (415)
T ss_pred cccCCCCCCCCCccccCEEEECcCHHHHHHHHHHhcC------CCEEEEEecCCccccCCCCcEEEechHHHHHH-HHCC
Confidence 3444454444556689999999999999999999999 999999999987643211 2335666655422 2222
Q ss_pred -cCCccccccchhhhhhhcCCCC--cccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCC
Q psy14496 87 -LNKLFNTPVIEERFLFLSSKKS--YKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSK 162 (561)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-gv~i~~g~~v~~i~~~~~ 162 (561)
.+...........+.+.+..+. ..+.....+ .....+.+.+..|.+.|.+.+.+. |++++++++++++..+++
T Consensus 77 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~ 153 (415)
T PRK07364 77 VWEKILPQIGKFRQIRLSDADYPGVVKFQPTDLG---TEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQD 153 (415)
T ss_pred hhhhhHhhcCCccEEEEEeCCCCceeeeccccCC---CCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC
Confidence 0000000001111111111111 111100010 011245555557889999988774 799999999999977544
Q ss_pred CCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCC
Q psy14496 163 NNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKK 242 (561)
Q Consensus 163 g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (561)
+ +.|.+.+ ++. ..++++|+||+|||.+|.+|+. ++....... .+...+......+ ....
T Consensus 154 ~--~~v~~~~-----~~~-------~~~i~adlvIgADG~~S~vR~~----~~~~~~~~~-~~~~~~~~~~~~~--~~~~ 212 (415)
T PRK07364 154 A--ATVTLEI-----EGK-------QQTLQSKLVVAADGARSPIRQA----AGIKTKGWK-YWQSCVTATVKHE--APHN 212 (415)
T ss_pred e--eEEEEcc-----CCc-------ceEEeeeEEEEeCCCCchhHHH----hCCCceeec-CCCEEEEEEEEcc--CCCC
Confidence 3 2344421 110 1369999999999999999877 444332111 1111222222211 1112
Q ss_pred CcEEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCCC-C-CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeecc
Q psy14496 243 GLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYK-N-PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITT 320 (561)
Q Consensus 243 ~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~-~-~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~ 320 (561)
....+.+ |+ .+..+++|.+++..++.+....+.. . ...+..+..+.+.. .+...+..-+.+.. ....+.
T Consensus 213 ~~~~~~~-~~-----~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~~~ 283 (415)
T PRK07364 213 DIAYERF-WP-----SGPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQ--RYGDQLGKLELLGD-RFLFPV 283 (415)
T ss_pred CEEEEEe-cC-----CCCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhhcCceecCC-Cceecc
Confidence 2222221 21 2335677887777666544321100 0 00111111121111 11111111111110 011111
Q ss_pred CCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcC-CCc--cchhhHHHHHhhchhhHhhhh
Q psy14496 321 GGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSN-NKF--NKLITYKTSFQASWLYKELYK 397 (561)
Q Consensus 321 ~~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~-~~~--~~l~~y~~~~~~~~~~~~~~~ 397 (561)
. ....++|..+|++|+|||||.++|+.|||+|+||+||..||+.|...+..+ +.. ..|+.|++.++.. ....++.
T Consensus 284 ~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~ 361 (415)
T PRK07364 284 Q-LMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRE-NWLILGF 361 (415)
T ss_pred h-hhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHH
Confidence 1 122457888999999999999999999999999999999999998876433 322 2399999977754 4445556
Q ss_pred hhccchhh
Q psy14496 398 ARNFKPAM 405 (561)
Q Consensus 398 ~~~~~~~~ 405 (561)
++.+.+++
T Consensus 362 s~~~~~~~ 369 (415)
T PRK07364 362 TDLLDRLF 369 (415)
T ss_pred HHHHHHHH
Confidence 66566555
No 20
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.97 E-value=1.2e-28 Score=254.48 Aligned_cols=343 Identities=14% Similarity=0.109 Sum_probs=186.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC--CCceeecceeChhhHHhhcccccc-CCccccccch
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL--GAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIE 97 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~--g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~ 97 (561)
|.+||+||||||+||++|+.|++. |++|+|+||.+.+ .... .+..+.+++++ .+..+.. +.........
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~-~a~~l~~~~~~-~l~~lGl~~~l~~~~~~~ 72 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLA------GIDSVVLERRSREYVEGRI-RAGVLEQGTVD-LLREAGVGERMDREGLVH 72 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhc------CCCEEEEEcCCcccccccc-ceeEECHhHHH-HHHHcCChHHHHhcCCcc
Confidence 578999999999999999999999 9999999999853 1222 23356777654 2233320 0000011111
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccccccc
Q psy14496 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINK 177 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~ 177 (561)
..+.+........++ ++..........+.+..+.+.|.+.+.+.|++++++++++++... ++..+.|... .
T Consensus 73 ~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~-----~ 143 (392)
T PRK08243 73 DGIELRFDGRRHRID---LTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYE-----K 143 (392)
T ss_pred CcEEEEECCEEEEec---cccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEE-----c
Confidence 112222211111111 111111122345678899999999988889999999999998752 2222334441 1
Q ss_pred CCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCC-CCccccceeEEEE-eeCCCccCCCcEEEEeccCCCC
Q psy14496 178 EGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKK-DPQTYSLGIKELW-TINPKLHKKGLVIHTIGWPLDY 255 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~ 255 (561)
+|+ ..++++|+||+|||.+|.+|+.+ +..... ....+..++.... ..++ ......+. .
T Consensus 144 ~G~-------~~~i~ad~vVgADG~~S~vR~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~-- 203 (392)
T PRK08243 144 DGE-------EHRLDCDFIAGCDGFHGVSRASI----PAGALRTFERVYPFGWLGILAEAPP---VSDELIYA----N-- 203 (392)
T ss_pred CCe-------EEEEEeCEEEECCCCCCchhhhc----CcchhhceecccCceEEEEeCCCCC---CCCceEEe----e--
Confidence 221 13789999999999999998884 332211 1111112221111 1111 11111111 1
Q ss_pred CCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhC-h-hHHHhhcCCeeeeecceeeccCCCccCCeeecCC
Q psy14496 256 KTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTH-P-KICKILKGGKRISYGARTITTGGLQSLPEFIFDG 333 (561)
Q Consensus 256 ~~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~-p-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (561)
...+..++++.+++...+.+........+........+.+... + .....+..+..... ...+.. ....++|+.+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~gr 280 (392)
T PRK08243 204 HERGFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEK--SIAPLR-SFVAEPMQYGR 280 (392)
T ss_pred CCCceEEEecCCCCcEEEEEEecCCCCcccCChhHHHHHHHHhcCcccccccccCccccc--cceeee-eceeccceeCC
Confidence 1122234444444444444333221111111121212222110 0 00000001111100 000100 11234677899
Q ss_pred EEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 334 GAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 334 v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
++|+|||||.++|+.|||+|+||+||..||+.|.+.+.. .....|..|++.++.. +.+.++.++.+.+++
T Consensus 281 vvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~-~~~~~L~~Ye~~r~~r-~~~~~~~~~~~~~~~ 350 (392)
T PRK08243 281 LFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE-GDTALLDAYSATALRR-VWKAERFSWWMTSML 350 (392)
T ss_pred EEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999987653 3323499999999866 456666666666665
No 21
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.97 E-value=1.2e-28 Score=255.31 Aligned_cols=343 Identities=13% Similarity=0.137 Sum_probs=198.6
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcc-ccccchh
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLF-NTPVIEE 98 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~-~~~~~~~ 98 (561)
++..||+|||||||||++|+.|++. |++|+||||.+.++.. ..|..+.+.++..+ ..+.....+ .......
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~------g~~v~v~Er~~~~~~~-g~gi~l~~~~~~~l-~~lg~~~~~~~~~~~~~ 73 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQ------GIKVKLLEQAAEIGEI-GAGIQLGPNAFSAL-DALGVGEAARQRAVFTD 73 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhC------CCcEEEEeeCcccccc-cceeeeCchHHHHH-HHcCChHHHHhhccCCc
Confidence 3678999999999999999999999 9999999999876532 23445666665432 332210000 0111111
Q ss_pred hhhhhcCCCCcccCCCCCCcee---ecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14496 99 RFLFLSSKKSYKIPSWILPICF---KNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~i~r~~l~~~L~~~a~~~-gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
.+.+.+...+..+.....+... .....+.++|..|.+.|.+.+.+. +++++++++++++..+++ . +.|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~-v~v~~---- 147 (396)
T PRK08163 74 HLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-G-VTVFD---- 147 (396)
T ss_pred ceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-c-eEEEE----
Confidence 2222221100000000011000 011245789999999999999876 499999999999976533 2 23444
Q ss_pred cccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCC--CccCCCcEEEEeccC
Q psy14496 175 INKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINP--KLHKKGLVIHTIGWP 252 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p 252 (561)
.+|.++++|+||+|||.+|.+|+.+. +.+. ....+ ..+...+.... ........ +. |
T Consensus 148 -----------~~g~~~~ad~vV~AdG~~S~~r~~~~---g~~~--~~~g~-~~~~~~~~~~~~~~~~~~~~~-~~--~- 206 (396)
T PRK08163 148 -----------QQGNRWTGDALIGCDGVKSVVRQSLV---GDAP--RVTGH-VVYRAVIDVDDMPEDLRINAP-VL--W- 206 (396)
T ss_pred -----------cCCCEEecCEEEECCCcChHHHhhcc---CCCC--Ccccc-EEEEEEEeHHHCcchhccCcc-EE--E-
Confidence 33568999999999999999987742 3211 11111 12222222111 00011111 11 1
Q ss_pred CCCCCCceEEEEEcCCCe-EEEEEEecCCC----CCCCCChHHHHHHhh-hChhHHHhhcCCeeeeecceeeccCCCccC
Q psy14496 253 LDYKTYGGGFLYHMENNQ-ISIGYIISLDY----KNPYLSPFEEFQRYK-THPKICKILKGGKRISYGARTITTGGLQSL 326 (561)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~-~~ig~~~~~~~----~~~~~~~~~~~~~~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (561)
.+..+..+.+|..++. +.+.+....+. ........+..+.|. .+|.+.++++....... ..+. ....+
T Consensus 207 --~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~ 280 (396)
T PRK08163 207 --AGPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKR--WATA--DREPV 280 (396)
T ss_pred --EcCCceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCceeE--cccc--CCCcc
Confidence 1223345567765443 33333332221 111223334444554 24666666654322111 1111 12345
Q ss_pred CeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhhh
Q psy14496 327 PEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMK 406 (561)
Q Consensus 327 ~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~ 406 (561)
++|+.+|++|+|||||.++|+.|||+|+||+||..||+.|... ..+....|+.|++.|+.. +.+.+..++.+..++.
T Consensus 281 ~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~al~~y~~~R~~r-~~~~~~~s~~~~~~~~ 357 (396)
T PRK08163 281 AKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC--DGDAEAAFALYESVRIPR-TARVVLSAREMGRIYH 357 (396)
T ss_pred cccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhC
Confidence 6788899999999999999999999999999999999988642 223333499999999876 4566666666666553
No 22
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.97 E-value=9.2e-29 Score=256.73 Aligned_cols=340 Identities=11% Similarity=0.085 Sum_probs=191.1
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc-------eeecceeChhhHHhh--ccccccCCcc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH-------ILSGAIIDPRSIFEL--FPKEKLNKLF 91 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~-------~~~G~~~~~~~l~~l--~~~~~~~~~~ 91 (561)
|++||+||||||+||++|+.|++. |++|+|||+.+..... ...+..+.+.++.-+ ++.|. ...
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~--~l~ 72 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGS------GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWD--GIA 72 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcC------CCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhh--hhh
Confidence 568999999999999999999999 9999999998732110 012334555554422 22222 000
Q ss_pred cc-ccchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEe
Q psy14496 92 NT-PVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIAT 170 (561)
Q Consensus 92 ~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~ 170 (561)
.. ......+.+.+..+...+. +..........++.+++..+.+.|.+.+.+.|++++++++++++..++++ +.|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~ 149 (405)
T PRK05714 73 ARRASPYSEMQVWDGSGTGQIH-FSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTL 149 (405)
T ss_pred HhhCccceeEEEEcCCCCceEE-ecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEE
Confidence 00 0111122222222111111 00000000122578999999999999998889999999999999876443 33444
Q ss_pred cccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEec
Q psy14496 171 NNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIG 250 (561)
Q Consensus 171 ~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (561)
++|.++++|+||+|||.+|.+|+. +++......... ..+......+. ......+..+
T Consensus 150 ---------------~~g~~~~a~~vVgAdG~~S~vR~~----lg~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~- 206 (405)
T PRK05714 150 ---------------ADGRQLRAPLVVAADGANSAVRRL----AGCATREWDYLH-HAIVTSVRCSE--PHRATAWQRF- 206 (405)
T ss_pred ---------------CCCCEEEeCEEEEecCCCchhHHh----cCCCcccccCCc-eEEEEEEEcCC--CCCCEEEEEc-
Confidence 335689999999999999999887 455432211111 11111111111 1112222221
Q ss_pred cCCCCCCCceEEEEEcCCC----eEEEEEEecCCCCCC--CCChHHHHHHhhhC--hhHHHhhcCCeeeeecceeeccCC
Q psy14496 251 WPLDYKTYGGGFLYHMENN----QISIGYIISLDYKNP--YLSPFEEFQRYKTH--PKICKILKGGKRISYGARTITTGG 322 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~~----~~~ig~~~~~~~~~~--~~~~~~~~~~~~~~--p~~~~~l~~~~~~~~~~~~~~~~~ 322 (561)
...+..+++|..++ ..++.+....+.... .....+..+.+... ..+.+++...... ..+. .
T Consensus 207 -----~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~l-~ 275 (405)
T PRK05714 207 -----TDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRL-----CVPL-R 275 (405)
T ss_pred -----CCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCcc-----EEec-c
Confidence 12233456676422 233433332111000 01111111111100 1111111111111 1111 1
Q ss_pred CccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC-C-ccc-hhhHHHHHhhchhhHhhhhhh
Q psy14496 323 LQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN-K-FNK-LITYKTSFQASWLYKELYKAR 399 (561)
Q Consensus 323 ~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~-~-~~~-l~~y~~~~~~~~~~~~~~~~~ 399 (561)
....++|+.+|++|+|||||.++|+.|||+|+||+||..||+.|...+..+. . ... |+.|++.|+.. +.+.+..++
T Consensus 276 ~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~ 354 (405)
T PRK05714 276 QRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPH-NLALMAAME 354 (405)
T ss_pred eeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 1235688899999999999999999999999999999999999987664432 2 123 99999999876 566677777
Q ss_pred ccchhhh
Q psy14496 400 NFKPAMK 406 (561)
Q Consensus 400 ~~~~~~~ 406 (561)
.+.++|.
T Consensus 355 ~~~~~~~ 361 (405)
T PRK05714 355 GFERLFQ 361 (405)
T ss_pred HHHHHHC
Confidence 7776663
No 23
>PRK05868 hypothetical protein; Validated
Probab=99.97 E-value=2e-28 Score=250.17 Aligned_cols=339 Identities=11% Similarity=0.104 Sum_probs=186.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhcccccc-CCccccccchhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~ 101 (561)
.||+||||||+||++|+.|++. |++|+|||+.+.+... ..+..+.+.+++ .+..+.. ............+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~-g~~i~~~~~a~~-~L~~lGl~~~~~~~~~~~~~~~ 73 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRH------GYSVTMVERHPGLRPG-GQAIDVRGPALD-VLERMGLLAAAQEHKTRIRGAS 73 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCC-ceeeeeCchHHH-HHHhcCCHHHHHhhccCccceE
Confidence 3899999999999999999999 9999999999876431 122234454443 2222220 00000011111222
Q ss_pred hhcCCCCcccCC-CCCCce-eecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 102 FLSSKKSYKIPS-WILPIC-FKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 102 ~~~~~~~~~~~~-~~~p~~-~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+.+.++...... ...+.. ......+.+.|..|.+.|.+.+ ..|++++++++|+++..+++ . +.|.
T Consensus 74 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~-~-v~v~---------- 140 (372)
T PRK05868 74 FVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGD-S-VRVT---------- 140 (372)
T ss_pred EEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCC-e-EEEE----------
Confidence 222222111000 000000 0012256789999999887644 46899999999999976422 2 3343
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCCc
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYG 259 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 259 (561)
|++|.++++|+||+|||.+|.+|+.+. +.... ....++ .....+.++.. ...+.. +. |.+ +...
T Consensus 141 -----~~dg~~~~adlvIgADG~~S~vR~~~~---~~~~~-~~~~~g-~~~~~~~~~~~-~~~~~~-~~--~~~--g~~~ 204 (372)
T PRK05868 141 -----FERAAAREFDLVIGADGLHSNVRRLVF---GPEEQ-FVKRLG-THAAIFTVPNF-LELDYW-QT--WHY--GDST 204 (372)
T ss_pred -----ECCCCeEEeCEEEECCCCCchHHHHhc---CCccc-ceeecc-eEEEEEEcCCC-CCCCcc-eE--EEe--cCCc
Confidence 455678999999999999999988853 22211 111111 11122223321 111111 11 101 1111
Q ss_pred eEEEEEcCCC-eEEEEEEecCCC--CCCC--CChHHHH-HHhhh--C--hhHHHhhcCCeeeeecceeeccCCCccCCee
Q psy14496 260 GGFLYHMENN-QISIGYIISLDY--KNPY--LSPFEEF-QRYKT--H--PKICKILKGGKRISYGARTITTGGLQSLPEF 329 (561)
Q Consensus 260 ~~~~~~~~~~-~~~ig~~~~~~~--~~~~--~~~~~~~-~~~~~--~--p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (561)
...+||..++ .....+...... .+.. ....+.+ +.|.. . +.+.+.+.......+ +......+++|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~-----~~~~~~~~~~w 279 (372)
T PRK05868 205 MAGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYF-----DEMSQILMDRW 279 (372)
T ss_pred EEEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceee-----ccceEEecCCC
Confidence 2235555432 322222221110 0100 0111222 23321 1 334444332222111 10111235688
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhhh
Q psy14496 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMK 406 (561)
Q Consensus 330 ~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~ 406 (561)
+.+||+|+|||||.++|+.|||+|+||+||..||+.|... ..+...+|+.|++.+|.. +.+.++..+.....|.
T Consensus 280 ~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~--~~~~~~al~~ye~~~~~~-~~~~q~~~~~~~~~~~ 353 (372)
T PRK05868 280 SRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--GDDYQLGFANYHAEFHGF-VERNQWLVSDNIPGGA 353 (372)
T ss_pred CCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhHH-HHHhhhhhhccCCccc
Confidence 9999999999999999999999999999999999999652 233434499999998865 5666777777777763
No 24
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.97 E-value=3.8e-28 Score=251.02 Aligned_cols=325 Identities=12% Similarity=0.087 Sum_probs=186.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee----ecceeChhhHHh--hccccc-cCCccc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL----SGAIIDPRSIFE--LFPKEK-LNKLFN 92 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~----~G~~~~~~~l~~--l~~~~~-~~~~~~ 92 (561)
.+.+||+||||||+|+++|+.|++. |++|+||||.+.++.... ....+.+.++.- .++.|. ......
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~------G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA------GLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARA 77 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC------CCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhC
Confidence 3568999999999999999999999 999999999876532211 112355655432 123332 100000
Q ss_pred cccchhhhhhhcCC--CCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEe
Q psy14496 93 TPVIEERFLFLSSK--KSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIAT 170 (561)
Q Consensus 93 ~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~ 170 (561)
... ..+...+.. ....++..... ....+|.++|..|.+.|.+.+.+.|++++++++|+++..+++ . +.|++
T Consensus 78 ~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~-v~v~~ 150 (392)
T PRK08773 78 QPY--RRMRVWDAGGGGELGFDADTLG---REQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD-R-VRLRL 150 (392)
T ss_pred Ccc--cEEEEEeCCCCceEEechhccC---CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-e-EEEEE
Confidence 011 111111111 11111111110 112268899999999999999999999999999999986533 2 33544
Q ss_pred cccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEec
Q psy14496 171 NNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIG 250 (561)
Q Consensus 171 ~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (561)
. +|.++++|+||+|||.+|.+++. +++......... .++...+....+ .....+..+
T Consensus 151 ~---------------~g~~~~a~~vV~AdG~~S~vr~~----~g~~~~~~~~~~-~~~~~~v~~~~~--~~~~~~~~~- 207 (392)
T PRK08773 151 D---------------DGRRLEAALAIAADGAASTLREL----AGLPVSRHDYAQ-RGVVAFVDTEHP--HQATAWQRF- 207 (392)
T ss_pred C---------------CCCEEEeCEEEEecCCCchHHHh----hcCCceEEEecc-EEEEEEEEccCC--CCCEEEEEe-
Confidence 2 35689999999999999998777 455432111111 122222222111 122222221
Q ss_pred cCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCC--CCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCe
Q psy14496 251 WPLDYKTYGGGFLYHMENNQISIGYIISLDYKNP--YLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
...+...++|.+++...+.+..+.+.... ..+..+..+.+. ..+.+.+..-+.... ....+.. ....++
T Consensus 208 -----~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~-~~~~~l~-~~~~~~ 278 (392)
T PRK08773 208 -----LPTGPLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELT--QAFAARLGEVRVASP-RTAFPLR-RQLVQQ 278 (392)
T ss_pred -----CCCCcEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHH--HHHhhhhcCeEecCC-ccEeech-hhhhhh
Confidence 12233456788777766666543211000 011111111111 111111111111100 0011111 123567
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC-Cc-cc-hhhHHHHHhhc
Q psy14496 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN-KF-NK-LITYKTSFQAS 389 (561)
Q Consensus 329 ~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~-~~-~~-l~~y~~~~~~~ 389 (561)
|..+|++|+|||||.++|+.|||+|+||+||..||+.|.+.+..+. .. .. |++|+++|+..
T Consensus 279 ~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~ 342 (392)
T PRK08773 279 YVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSD 342 (392)
T ss_pred hcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999998765432 21 23 99999988765
No 25
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.97 E-value=3.1e-28 Score=251.48 Aligned_cols=339 Identities=14% Similarity=0.092 Sum_probs=198.0
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce----eecceeChhhHHhhccccc-cCCccc-cccch
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----LSGAIIDPRSIFELFPKEK-LNKLFN-TPVIE 97 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~----~~G~~~~~~~l~~l~~~~~-~~~~~~-~~~~~ 97 (561)
||+|||||||||++|+.|++. |++|+||||.+.++... ..+..+.+.++..+ ..+. .+.... .....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~------G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l-~~lGl~~~~~~~~~~~~ 73 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS------GLKIALIEATPAEAAATPGFDNRVSALSAASIRLL-EKLGVWDKIEPDRAQPI 73 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC------CCEEEEEeCCCccccCCCCCCcceeecCHHHHHHH-HHCCchhhhhhhcCCCc
Confidence 799999999999999999999 99999999998764321 12344666654432 2222 111111 11111
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14496 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~g-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
..+.+.+..+...+. +..+........+.++|..|.+.|.+.+.+.| ++++++++|+++..+++ . +.|.+
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~-~~v~~------ 144 (385)
T TIGR01988 74 RDIHVSDGGSFGALH-FDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-H-VELTL------ 144 (385)
T ss_pred eEEEEEeCCCCceEE-echhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-e-eEEEE------
Confidence 122222222111111 00000001123688999999999999998887 99999999999976533 2 33444
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCC
Q psy14496 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYK 256 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 256 (561)
++|.++++|+||+|||.+|.+|+. ++++....... ...+...+..+.. ........+ .
T Consensus 145 ---------~~g~~~~~~~vi~adG~~S~vr~~----l~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~------~ 202 (385)
T TIGR01988 145 ---------DDGQQLRARLLVGADGANSKVRQL----AGIPTTGWDYG-QSAVVANVKHERP--HQGTAWERF------T 202 (385)
T ss_pred ---------CCCCEEEeeEEEEeCCCCCHHHHH----cCCCccccccC-CeEEEEEEEecCC--CCCEEEEEe------c
Confidence 335679999999999999999887 45443221111 1222222222211 122221111 1
Q ss_pred CCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCE
Q psy14496 257 TYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGG 334 (561)
Q Consensus 257 ~~g~~~~~~~~~~~~~ig~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 334 (561)
..+..+++|.+++...+.+........ ......+..+.+... +.+.+..... .......+. .....++|..+|+
T Consensus 203 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~v 278 (385)
T TIGR01988 203 PTGPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRA--FGSRLGAITL-VGERHAFPL-SLTHAKRYVAPRL 278 (385)
T ss_pred CCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HhhhcCceEe-ccCcceeec-hhhhhhheecCce
Confidence 223456779888877777664321100 011222222222110 1111111000 001111111 1123457888999
Q ss_pred EEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcC-CC--ccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 335 AFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSN-NK--FNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 335 ~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~-~~--~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
+|+|||||.++|+.|||+++||+||..||+.|...+..+ +. ...|+.|++.++.. +...+..++.+.+++
T Consensus 279 ~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~-~~~~~~~~~~~~~~~ 351 (385)
T TIGR01988 279 ALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFD-NAAMLGATDGLNRLF 351 (385)
T ss_pred EEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999876533 22 23399999999875 556667777777766
No 26
>PRK06753 hypothetical protein; Provisional
Probab=99.97 E-value=2e-28 Score=251.67 Aligned_cols=333 Identities=17% Similarity=0.158 Sum_probs=195.8
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccchhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~ 101 (561)
.+|+|||||||||++|+.|++. |++|+||||.+.+.. ...|..+.+.++..+ ..+. .............+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~-~g~gi~l~~~~~~~L-~~~gl~~~~~~~~~~~~~~~ 72 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ------GHEVKVFEKNESVKE-VGAGIGIGDNVIKKL-GNHDLAKGIKNAGQILSTMN 72 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCcccc-cccceeeChHHHHHH-HhcChHHHHHhcCCccccee
Confidence 3799999999999999999999 999999999987653 224556677765543 2222 000000011112222
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+.+..+.. +....+. .....+.++|..|.+.|.+.+. +.+++++++|+++..+ ++. +.|.+
T Consensus 73 ~~~~~g~~-~~~~~~~---~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~-~~~-v~v~~----------- 133 (373)
T PRK06753 73 LLDDKGTL-LNKVKLK---SNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENE-TDK-VTIHF----------- 133 (373)
T ss_pred EEcCCCCE-Eeecccc---cCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEec-CCc-EEEEE-----------
Confidence 22222211 1100110 1123678999999999998875 4689999999999865 332 33443
Q ss_pred ecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCcc-CCCcEEEEeccCCCCCCCce
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLH-KKGLVIHTIGWPLDYKTYGG 260 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~g~ 260 (561)
++|.++++|+||+|||.+|.+|+.+. .........+ ..+.... +.... ......+.+ ...+.
T Consensus 134 ----~~g~~~~~~~vigadG~~S~vR~~~~----~~~~~~~~g~-~~~~~~~--~~~~~~~~~~~~~~~------~~~g~ 196 (373)
T PRK06753 134 ----ADGESEAFDLCIGADGIHSKVRQSVN----ADSKVRYQGY-TCFRGLI--DDIDLKLPDCAKEYW------GTKGR 196 (373)
T ss_pred ----CCCCEEecCEEEECCCcchHHHHHhC----CCCCceEcce-EEEEEEe--ccccccCccceEEEE------cCCCE
Confidence 34678999999999999999988843 2221111111 1122111 21111 111122221 22344
Q ss_pred EEEEEcCCCeEEEEEEecCCCCCCCC--ChHHHHH-Hhhh-ChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEE
Q psy14496 261 GFLYHMENNQISIGYIISLDYKNPYL--SPFEEFQ-RYKT-HPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAF 336 (561)
Q Consensus 261 ~~~~~~~~~~~~ig~~~~~~~~~~~~--~~~~~~~-~~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 336 (561)
.+++|..++.+.+.+....+...+.. ...+.+. .|.. .+.+.++++....... ...+.......++|..+|++|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~rv~L 274 (373)
T PRK06753 197 FGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGI--LHHDIYDLKPLKSFVYGRIVL 274 (373)
T ss_pred EEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCcccc--eeeccccccccccccCCCEEE
Confidence 56778877766665544322111111 1112222 2322 2445555533211110 001111122356788899999
Q ss_pred EecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhhh
Q psy14496 337 IGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMK 406 (561)
Q Consensus 337 vGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~ 406 (561)
+|||||.|+|+.|||+|+||+||..|++.|.. .+....|+.|++.+++. +.+.++.++.+.+++.
T Consensus 275 iGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~----~~~~~al~~Y~~~r~~~-~~~~~~~s~~~~~~~~ 339 (373)
T PRK06753 275 LGDAAHATTPNMGQGAGQAMEDAIVLANCLNA----YDFEKALQRYDKIRVKH-TAKVIKRSRKIGKIAQ 339 (373)
T ss_pred EecccccCCCCcCccHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhHH-HHHHHHHHHHHhHHHh
Confidence 99999999999999999999999999998843 23323499999999876 5677777777777663
No 27
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.97 E-value=7.7e-28 Score=259.81 Aligned_cols=355 Identities=14% Similarity=0.112 Sum_probs=194.5
Q ss_pred CcccEEEECchhHHHHHHHHHHh-ccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhcccccc-CCccccccchh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQ-LAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIEE 98 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~-~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~~ 98 (561)
.++||+||||||+||++|+.|++ . |++|+|||+.+.+.. ...+..+.+++++-+ ..+.. +..........
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~------Gi~v~IiE~~~~~~~-~grA~gl~prtleiL-~~lGl~d~l~~~g~~~~ 102 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFP------DITTRIVERKPGRLE-LGQADGIACRTMEMF-QAFGFAERILKEAYWIN 102 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCC------CCcEEEEEcCCCCCC-CCeeeEEChHHHHHH-HhccchHHHHhhccccc
Confidence 36899999999999999999999 7 999999999876432 223456788876533 32220 00000000101
Q ss_pred hhhhhcCCC----CcccCC--CCCCceeecCCcEEeeHHHHHHHHHHHHHHCC--CEEEcCceEeEEEEcCCC-CEEEEE
Q psy14496 99 RFLFLSSKK----SYKIPS--WILPICFKNHGNYIISLSDLVRWMGKKAENMG--IDIFSGFSASEILYDSKN-NVCGIA 169 (561)
Q Consensus 99 ~~~~~~~~~----~~~~~~--~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~g--v~i~~g~~v~~i~~~~~g-~v~~V~ 169 (561)
.+.+..... .+.... ...+..........++|..+++.|.+.+.+.| +++.++++++++..++++ ..+.|.
T Consensus 103 ~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~ 182 (634)
T PRK08294 103 ETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVT 182 (634)
T ss_pred ceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEE
Confidence 111111110 000000 00111111122467899999999999998765 578999999999875432 223455
Q ss_pred ecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEe
Q psy14496 170 TNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTI 249 (561)
Q Consensus 170 ~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (561)
+.+.....+|+ ..+++||+||+|||++|.+|++ +|+...........++..+..... +........+
T Consensus 183 l~~~~~~~~g~-------~~tv~A~~lVGaDGa~S~VR~~----lgi~~~G~~~~~~~~v~dv~~~~~--~p~~~~~~~~ 249 (634)
T PRK08294 183 LRRTDGEHEGE-------EETVRAKYVVGCDGARSRVRKA----IGRELRGDSANHAWGVMDVLAVTD--FPDIRLKCAI 249 (634)
T ss_pred EEECCCCCCCc-------eEEEEeCEEEECCCCchHHHHh----cCCCccCCcccceEEEEEEEEccC--CCCcceEEEE
Confidence 43210001221 1589999999999999999998 565543222222223333222111 1110111111
Q ss_pred ccCCCCCCCceEEEEEcCCCe-EEEEEEecC-CCC----CCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCC
Q psy14496 250 GWPLDYKTYGGGFLYHMENNQ-ISIGYIISL-DYK----NPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGL 323 (561)
Q Consensus 250 ~~p~~~~~~g~~~~~~~~~~~-~~ig~~~~~-~~~----~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 323 (561)
+ ....+...++|..++. +.+.+.... ... ....+..+..+.+... +.+....-+.+.+.. ....+.
T Consensus 250 -~---~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~--~~p~~~~~~~v~w~s--~y~i~~ 321 (634)
T PRK08294 250 -Q---SASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRI--LHPYTLDVKEVAWWS--VYEVGQ 321 (634)
T ss_pred -e---cCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHh--cCCCCCceeEEeEEe--cccccc
Confidence 1 0223445567887663 444332211 100 1122333333332210 011000001111110 000000
Q ss_pred ccCCe----------eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhH
Q psy14496 324 QSLPE----------FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYK 393 (561)
Q Consensus 324 ~~~~~----------~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~ 393 (561)
+..++ +..+||+|+|||||.++|..|||+|++|+||..||+.|+..+.+......|+.|+++|++. ...
T Consensus 322 r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~-a~~ 400 (634)
T PRK08294 322 RLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAI-AQE 400 (634)
T ss_pred eehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHH
Confidence 11111 2358999999999999999999999999999999999999886443323399999999865 445
Q ss_pred hhhhhhccchhh
Q psy14496 394 ELYKARNFKPAM 405 (561)
Q Consensus 394 ~~~~~~~~~~~~ 405 (561)
.+...+.+.++|
T Consensus 401 li~~~~~~~~l~ 412 (634)
T PRK08294 401 LIDFDREWSTMM 412 (634)
T ss_pred HHHHHHHHHHHh
Confidence 556666666665
No 28
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.97 E-value=6.7e-28 Score=259.02 Aligned_cols=344 Identities=14% Similarity=0.151 Sum_probs=188.4
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhcccccc-CCccccccc
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVI 96 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~ 96 (561)
..++.+||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+.+++++- +..+.. .........
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viE~~~~~~~~-~ra~~l~~~~~~~-l~~lGl~~~l~~~~~~ 90 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQ------GVPVVLLDDDDTLSTG-SRAICFAKRSLEI-FDRLGCGERMVDKGVS 90 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEeCCCCCCCC-CeEEEEcHHHHHH-HHHcCCcHHHHhhCce
Confidence 334789999999999999999999999 9999999999865322 1244567766543 233220 000000000
Q ss_pred hhhhhhhcCCCCc-ccCCCCCCceee-cCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEeccc
Q psy14496 97 EERFLFLSSKKSY-KIPSWILPICFK-NHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNNF 173 (561)
Q Consensus 97 ~~~~~~~~~~~~~-~~~~~~~p~~~~-~~~~~~i~r~~l~~~L~~~a~~~-gv~i~~g~~v~~i~~~~~g~v~~V~~~~~ 173 (561)
......+...+.. .+.. .+.... ....+.+.+..+++.|.+.+.+. +++++++++|+++..++++..+.++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~-- 166 (547)
T PRK08132 91 WNVGKVFLRDEEVYRFDL--LPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETP-- 166 (547)
T ss_pred eeceeEEeCCCeEEEecC--CCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECC--
Confidence 0000001111110 1110 000000 01134578999999999999874 799999999999987644422222221
Q ss_pred ccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCC
Q psy14496 174 GINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPL 253 (561)
Q Consensus 174 ~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 253 (561)
+| ..++++|+||+|||.+|.+|+. +|++...........+.. ...... . +......+..+.
T Consensus 167 ----~g--------~~~i~ad~vVgADG~~S~vR~~----lg~~~~g~~~~~~~~~~d-~~~~~~-~-~~~~~~~~~~~~ 227 (547)
T PRK08132 167 ----DG--------PYTLEADWVIACDGARSPLREM----LGLEFEGRTFEDRFLIAD-VKMKAD-F-PTERWFWFDPPF 227 (547)
T ss_pred ----CC--------cEEEEeCEEEECCCCCcHHHHH----cCCCCCCccccceEEEEE-EEecCC-C-CCeeeEEEeccC
Confidence 11 1368999999999999999887 565543221111000100 111111 1 111112221111
Q ss_pred CCCCCceEEEEEcCCCeEEEEEEecCCCC-CCCCChHHHHHHhhhChhHHHhhcCCee--eeecceeeccCCCccCCeee
Q psy14496 254 DYKTYGGGFLYHMENNQISIGYIISLDYK-NPYLSPFEEFQRYKTHPKICKILKGGKR--ISYGARTITTGGLQSLPEFI 330 (561)
Q Consensus 254 ~~~~~g~~~~~~~~~~~~~ig~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 330 (561)
......++++..++.+.+.+....+.. .......+.. +.+..++..... +.+. ..........++|.
T Consensus 228 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~ 297 (547)
T PRK08132 228 --HPGQSVLLHRQPDNVWRIDFQLGWDADPEAEKKPENVI------PRVRALLGEDVPFELEWV--SVYTFQCRRMDRFR 297 (547)
T ss_pred --CCCcEEEEEeCCCCeEEEEEecCCCCCchhhcCHHHHH------HHHHHHcCCCCCeeEEEE--Eeeeeeeeeecccc
Confidence 111234445555555555443221110 0011111111 223333321111 1111 01011112356788
Q ss_pred cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccch
Q psy14496 331 FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKP 403 (561)
Q Consensus 331 ~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~ 403 (561)
.+||+|+|||||.++|+.|||+|+||+||..||+.|+..+.+......|+.|+++|+.. +...+..++.+..
T Consensus 298 ~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~-~~~~~~~s~~~~~ 369 (547)
T PRK08132 298 HGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFA-ADENIRNSTRSTD 369 (547)
T ss_pred cccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999998876433322399999999865 3333444444333
No 29
>PRK09126 hypothetical protein; Provisional
Probab=99.97 E-value=1.9e-28 Score=253.58 Aligned_cols=341 Identities=13% Similarity=0.111 Sum_probs=192.8
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC--ceeec--ceeChhhHHhhcccccc-CCcccc-
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA--HILSG--AIIDPRSIFELFPKEKL-NKLFNT- 93 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~--~~~~G--~~~~~~~l~~l~~~~~~-~~~~~~- 93 (561)
+|++||+|||||||||++|+.|++. |++|+|+||.+.++. ....| ..+.+.++. .+..+.. +.....
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~-~L~~lGl~~~~~~~~ 73 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGS------GLKVTLIERQPLAALADPAFDGREIALTHASRE-ILQRLGAWDRIPEDE 73 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC------CCcEEEEeCCCcccccCCCCchhHHHhhHHHHH-HHHHCCChhhhcccc
Confidence 4689999999999999999999999 999999999987531 11122 234454443 2333320 000000
Q ss_pred ccchhhhhhhcCCCCcccCCCCCCce--eecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEe
Q psy14496 94 PVIEERFLFLSSKKSYKIPSWILPIC--FKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIAT 170 (561)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~ 170 (561)
......+.+.+......+. ++.. .....++.++|..+.+.|.+.+.+ .|++++++++|+++..++++ +.|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~ 148 (392)
T PRK09126 74 ISPLRDAKVLNGRSPFALT---FDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTL 148 (392)
T ss_pred CCccceEEEEcCCCCceeE---eehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEE
Confidence 0001111111111111111 1100 011235778999999999998865 68999999999999765332 34544
Q ss_pred cccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEec
Q psy14496 171 NNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIG 250 (561)
Q Consensus 171 ~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (561)
++|.++++|+||+|||.+|.+|+. +++........... +...+..+. .......+.+
T Consensus 149 ---------------~~g~~~~a~~vI~AdG~~S~vr~~----~g~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~- 205 (392)
T PRK09126 149 ---------------ANGRRLTARLLVAADSRFSATRRQ----LGIGADMHDFGRTM-LVCRMRHEL--PHHHTAWEWF- 205 (392)
T ss_pred ---------------cCCCEEEeCEEEEeCCCCchhhHh----cCCCccccccCCeE-EEEEEeccC--CCCCEEEEEe-
Confidence 235689999999999999999887 45443211111101 111111111 1122222221
Q ss_pred cCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCC--CCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCe
Q psy14496 251 WPLDYKTYGGGFLYHMENNQISIGYIISLDYKNP--YLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
+..+..+++|.+++...+.+..+.+.... ..+..+..+.+.. .+...+........ ....+.. ....++
T Consensus 206 -----~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~ 276 (392)
T PRK09126 206 -----GYGQTLALLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTA--RFKGRLGAMRLVSS-RHAYPLV-AVYAHR 276 (392)
T ss_pred -----cCCCCeEEeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhccCeEEcCC-CcEeech-HHHHHH
Confidence 11223567898877777766543221000 0111111111110 01111111111000 0011111 112457
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcC-CC-ccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSN-NK-FNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 329 ~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~-~~-~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|..+|++|+|||||.++|+.|||+|+||+||..||+.|...+..+ +. ... |+.|+++++.. ....+..++.+..++
T Consensus 277 ~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~ 355 (392)
T PRK09126 277 FVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLA-TRPLYHATNAIAALY 355 (392)
T ss_pred HhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999877532 22 233 99999999876 455566666666655
No 30
>PRK06184 hypothetical protein; Provisional
Probab=99.97 E-value=6e-28 Score=256.83 Aligned_cols=339 Identities=14% Similarity=0.126 Sum_probs=186.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccchhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~ 100 (561)
++||+||||||+||++|+.|++. |++|+||||.+.+.... .+..+.+++++-+ ..+. .+...........+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~------Gi~v~viE~~~~~~~~~-ra~~l~~~~~e~l-~~lGl~~~l~~~~~~~~~~ 74 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR------GVSFRLIEKAPEPFPGS-RGKGIQPRTQEVF-DDLGVLDRVVAAGGLYPPM 74 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCcCc-cceeecHHHHHHH-HHcCcHHHHHhcCccccce
Confidence 58999999999999999999999 99999999998764322 4556777776532 3332 00000000000011
Q ss_pred hhhcCCCCcc---cCCCCCCceee-cCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14496 101 LFLSSKKSYK---IPSWILPICFK-NHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 101 ~~~~~~~~~~---~~~~~~p~~~~-~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
.+....+.+. +.....+.... ....+.+++..+++.|.+.+.+.|++++++++++++.+++++.. |.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~--v~~~~---- 148 (502)
T PRK06184 75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVT--ARVAG---- 148 (502)
T ss_pred eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEE--EEEEe----
Confidence 1111111110 00000000000 01256788999999999999989999999999999987644422 32211
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccc-cceeEEEEeeCCCccCCCcEEEEeccCCCC
Q psy14496 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTY-SLGIKELWTINPKLHKKGLVIHTIGWPLDY 255 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 255 (561)
. +++.++++|+||+|||++|.+|+. +++......... ...+.. ...+. .... ..+.+ ..
T Consensus 149 ~--------~~~~~i~a~~vVgADG~~S~vR~~----lgi~~~g~~~~~~~~~~~~-~~~~~--~~~~-~~~~~--~~-- 208 (502)
T PRK06184 149 P--------AGEETVRARYLVGADGGRSFVRKA----LGIGFPGETLGIDRMLVAD-VSLTG--LDRD-AWHQW--PD-- 208 (502)
T ss_pred C--------CCeEEEEeCEEEECCCCchHHHHh----CCCCcccCcCCCceEEEEE-EEeec--CCCc-ceEEc--cC--
Confidence 0 124589999999999999999887 565543221110 011111 11111 1111 12221 11
Q ss_pred CCCceEEEEEcCCC-eEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCE
Q psy14496 256 KTYGGGFLYHMENN-QISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGG 334 (561)
Q Consensus 256 ~~~g~~~~~~~~~~-~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 334 (561)
...+...++|..++ .+.+......+ ..+..+..+..+.+........ +. -+.+.+.. .........++|..+||
T Consensus 209 ~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~~--~~~~~~~~a~~~~~gRv 283 (502)
T PRK06184 209 GDMGMIALCPLPGTDLFQIQAPLPPG-GEPDLSADGLTALLAERTGRTD-IR-LHSVTWAS--AFRMNARLADRYRVGRV 283 (502)
T ss_pred CCCcEEEEEEccCCCeEEEEEEcCCC-ccCCCCHHHHHHHHHHhcCCCC-cc-eeeeeeee--ccccceeEhhhhcCCcE
Confidence 11123345566433 33433332221 1112222222222111100000 00 00011100 00001112357788999
Q ss_pred EEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhcc
Q psy14496 335 AFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNF 401 (561)
Q Consensus 335 ~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~ 401 (561)
+|+|||||.++|+.|||+|+||+||..||+.|+..+.+ .....|+.|+++|+.. +...+..++..
T Consensus 284 ~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-~~~~lL~~Ye~eR~p~-~~~~~~~s~~~ 348 (502)
T PRK06184 284 FLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG-APEALLDTYEEERRPV-AAAVLGLSTEL 348 (502)
T ss_pred EEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999988765 3322399999999875 34444444433
No 31
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.97 E-value=4.4e-28 Score=249.92 Aligned_cols=337 Identities=16% Similarity=0.162 Sum_probs=190.6
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCC-CcEEEEcCCCCCCCce---eecceeChhhHHhhccccccCCcc-ccccchh
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKE-IKICVLEKGSELGAHI---LSGAIIDPRSIFELFPKEKLNKLF-NTPVIEE 98 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G-~~V~ViEk~~~~g~~~---~~G~~~~~~~l~~l~~~~~~~~~~-~~~~~~~ 98 (561)
||+|||||||||++|+.|++. | ++|+|+||.+.+.... ..+..+.+.++.. +..+.....+ .......
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~------G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~-l~~lgl~~~~~~~~~~~~ 73 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL------GKIKIALIEANSPSAAQPGFDARSLALSYGSKQI-LEKLGLWPKLAPFATPIL 73 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC------CCceEEEEeCCCccccCCCCCCeeEeccHHHHHH-HHHCCChhhhHhhcCccc
Confidence 799999999999999999999 9 9999999998764431 1234566665442 2222200000 0000011
Q ss_pred hhhhhcCC--CCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14496 99 RFLFLSSK--KSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 99 ~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
.+.+.... ........... .....|.++|.+|.+.|.+.+.+ .|++++++++|+++..++++ +.|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~----- 143 (382)
T TIGR01984 74 DIHVSDQGHFGATHLRASEFG---LPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTL----- 143 (382)
T ss_pred eEEEEcCCCCceEEechhhcC---CCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEE-----
Confidence 11111111 11111100000 01225889999999999999988 59999999999999865443 33444
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCC
Q psy14496 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDY 255 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 255 (561)
++|.+++||+||+|||.+|.+++. +++........ ...+...+..... ........+
T Consensus 144 ----------~~g~~~~ad~vV~AdG~~S~vr~~----l~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~------ 200 (382)
T TIGR01984 144 ----------DNGQQLRAKLLIAADGANSKVREL----LSIPTEEHDYN-QTALIANIRHEQP--HQGCAFERF------ 200 (382)
T ss_pred ----------CCCCEEEeeEEEEecCCChHHHHH----cCCCCcccccC-CEEEEEEEEecCC--CCCEEEEee------
Confidence 235689999999999999998877 55443222110 1222222222111 111121211
Q ss_pred CCCceEEEEEcCCC-eEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecC
Q psy14496 256 KTYGGGFLYHMENN-QISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFD 332 (561)
Q Consensus 256 ~~~g~~~~~~~~~~-~~~ig~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (561)
...+..+++|.+++ ...+.+..+.+... ...+..+..+.+... +...+....... .....+.. ....++|..+
T Consensus 201 ~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~ 276 (382)
T TIGR01984 201 TPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQA--FGWRLGKITQVG-ERKTYPLK-LRIAETHVHP 276 (382)
T ss_pred CCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HhhhccCeEEcC-CccEeecc-hhhhhheecC
Confidence 11223456687666 55554443221100 011121222222211 111111111100 00111111 1235578889
Q ss_pred CEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 333 GGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 333 ~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|++|+|||||.++|+.|||+|+||+||..||+.|............|+.|+++++.. ....++.++.+..+|
T Consensus 277 rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~ 348 (382)
T TIGR01984 277 RVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFD-QFITIGLTDGLNRLF 348 (382)
T ss_pred CEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987642111122399999999865 345556666666666
No 32
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.97 E-value=5.2e-28 Score=252.65 Aligned_cols=342 Identities=17% Similarity=0.156 Sum_probs=193.1
Q ss_pred ccEEEECchhHHHHHHHHHHh----ccccCCCCCcEEEEcCCCCCCCc-----------eeecceeChhhHHhh--cccc
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQ----LAIKKNKEIKICVLEKGSELGAH-----------ILSGAIIDPRSIFEL--FPKE 85 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~----~~~~~~~G~~V~ViEk~~~~g~~-----------~~~G~~~~~~~l~~l--~~~~ 85 (561)
|||+||||||+||++|+.|++ . |++|+|||+.+.+... ...+..+.++++.-+ ++.|
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~------G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~ 74 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK------DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAW 74 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC------CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCch
Confidence 799999999999999999998 7 9999999996533211 011344566655432 2223
Q ss_pred ccCCccccccchhhhhhhcCCCC--cccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC---CEEEcCceEeEEEEc
Q psy14496 86 KLNKLFNTPVIEERFLFLSSKKS--YKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG---IDIFSGFSASEILYD 160 (561)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~g---v~i~~g~~v~~i~~~ 160 (561)
. ............+.+.+.... ..++... ......+.+++..|.+.|.+.+.+.+ ++++++++|+++..+
T Consensus 75 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~ 149 (437)
T TIGR01989 75 D-HIQSDRIQPFGRMQVWDGCSLALIRFDRDN----GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIP 149 (437)
T ss_pred h-hhhhhcCCceeeEEEecCCCCceEEeecCC----CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEec
Confidence 2 000000011111222222111 1111100 00122678999999999999998764 999999999999752
Q ss_pred -----CCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCcccc-ceeEEEEe
Q psy14496 161 -----SKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYS-LGIKELWT 234 (561)
Q Consensus 161 -----~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~ 234 (561)
+++..+.|.+ .+|.+++||+||+|||.+|.+|+. +++...... |. .++...+.
T Consensus 150 ~~~~~~~~~~v~v~~---------------~~g~~i~a~llVgADG~~S~vR~~----~gi~~~g~~--y~q~~~v~~v~ 208 (437)
T TIGR01989 150 SKYPNDNSNWVHITL---------------SDGQVLYTKLLIGADGSNSNVRKA----ANIDTTGWN--YNQHAVVATLK 208 (437)
T ss_pred cccccCCCCceEEEE---------------cCCCEEEeeEEEEecCCCChhHHH----cCCCcccee--eccEEEEEEEE
Confidence 1222233443 456789999999999999999988 566542211 11 11111122
Q ss_pred eCCCccCCCcEEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhh--------Chh----
Q psy14496 235 INPKLHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKT--------HPK---- 300 (561)
Q Consensus 235 ~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~--~~~~~~~~~~~~~~--------~p~---- 300 (561)
.... ...+...+.+ ...|-..++|..++..++.+........ ...+..+..+.+.. .|.
T Consensus 209 ~~~~-~~~~~~~~~f------~~~g~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~ 281 (437)
T TIGR01989 209 LEEA-TENDVAWQRF------LPTGPIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLL 281 (437)
T ss_pred cccC-CCCCeEEEEE------CCCCCEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhccccccccccccc
Confidence 2111 1222333332 1223344568877777776654321100 01111111111100 000
Q ss_pred ---HHHhhc---C---Ce------------eeeecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHH
Q psy14496 301 ---ICKILK---G---GK------------RISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSG 359 (561)
Q Consensus 301 ---~~~~l~---~---~~------------~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a 359 (561)
+..+++ . ++ ........++. .....++|..+|++|+|||||.++|+.|||+|+||+||
T Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da 360 (437)
T TIGR01989 282 DYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDV 360 (437)
T ss_pred ccccccccccccccccccccccccCchhheeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHH
Confidence 000000 0 00 00000011111 22335678889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-Cc-c-chhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 360 ILVADSIFKKICSNN-KF-N-KLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 360 ~~lA~~l~~~l~~~~-~~-~-~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
..||+.|.+.+..+. .. . .|+.|+++|+.. ....+..++.+.++|
T Consensus 361 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~v~~~t~~l~~l~ 408 (437)
T TIGR01989 361 ASLVKALAEAVSVGADIGSISSLKPYERERYAK-NVVLLGLVDKLHKLY 408 (437)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999998775433 22 2 399999999865 455566666666665
No 33
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.96 E-value=8e-28 Score=249.86 Aligned_cols=343 Identities=15% Similarity=0.102 Sum_probs=191.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc-eeecceeChhhHHhh--ccccccCCccccccchh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH-ILSGAIIDPRSIFEL--FPKEKLNKLFNTPVIEE 98 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~-~~~G~~~~~~~l~~l--~~~~~~~~~~~~~~~~~ 98 (561)
.|||+|||||||||++|+.|++. ++|++|+||||.+..... ...|..+.++++.-+ ++.|. ..........
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~----g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~--~~~~~~~~~~ 74 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQA----APHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWD--EIAPEAQPIT 74 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcC----CCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChh--hhhhhcCccc
Confidence 38999999999999999999998 223999999998764321 124556777665422 22222 0000000111
Q ss_pred hhhhhcCCCCccc--CCCCCCcee--ecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14496 99 RFLFLSSKKSYKI--PSWILPICF--KNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 99 ~~~~~~~~~~~~~--~~~~~p~~~--~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
.+.+.+..+.... ....+.... .....+.++|..|.+.|.+.+.+.|++++++++|+++..++++ +.|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~---- 148 (403)
T PRK07333 75 DMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTL---- 148 (403)
T ss_pred EEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEE----
Confidence 1111111110000 000000000 0122468999999999999999899999999999999765332 33444
Q ss_pred cccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCC
Q psy14496 175 INKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLD 254 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 254 (561)
++|.++++|+||+|||.+|.+++. +++......... .++........ ...+.....+
T Consensus 149 -----------~~g~~~~ad~vI~AdG~~S~vr~~----~g~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~----- 205 (403)
T PRK07333 149 -----------SDGSVLEARLLVAADGARSKLREL----AGIKTVGWDYGQ-SGIVCTVEHER--PHGGRAEEHF----- 205 (403)
T ss_pred -----------CCCCEEEeCEEEEcCCCChHHHHH----cCCCcccccCCC-EEEEEEEEcCC--CCCCEEEEEe-----
Confidence 235689999999999999998877 555432111111 11111121111 1112222221
Q ss_pred CCCCceEEEEEcCCCeEEEEEEecCCCCCC--CCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecC
Q psy14496 255 YKTYGGGFLYHMENNQISIGYIISLDYKNP--YLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFD 332 (561)
Q Consensus 255 ~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (561)
...+..+++|..++..++.+....+.... ........+.+.. .+...+..-.... .....+. .....++|+.+
T Consensus 206 -~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g 280 (403)
T PRK07333 206 -LPAGPFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQ--RFGHRLGELKVLG-KRRAFPL-GLTLARSFVAP 280 (403)
T ss_pred -CCCCceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhcCceEecc-CccEeec-hhhhhhhccCC
Confidence 22344567798877777655432110000 0011011111110 0111111101110 0011111 12235678889
Q ss_pred CEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC--Cccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 333 GGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN--KFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 333 ~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~--~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|++|+|||||.++|+.|||+|+||+||..||+.|...+..+. .... |+.|++.++.. ....+..++.+.+++
T Consensus 281 rv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~ 355 (403)
T PRK07333 281 RFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFD-TVRMGVTTDVLNRLF 355 (403)
T ss_pred CEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988775321 1233 99999877643 344444445555555
No 34
>PRK07588 hypothetical protein; Provisional
Probab=99.96 E-value=7.6e-28 Score=248.67 Aligned_cols=338 Identities=13% Similarity=0.116 Sum_probs=186.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhcccccc-CCccccccchhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~ 101 (561)
.||+|||||||||++|+.|++. |++|+||||.+..... ..+..+.++++. .+..+.. ............+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~-g~~~~l~~~~~~-~l~~lGl~~~l~~~~~~~~~~~ 72 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY------GHEPTLIERAPELRTG-GYMVDFWGVGYE-VAKRMGITDQLREAGYQIEHVR 72 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCceEEEeCCCCccCC-CeEEeccCcHHH-HHHHcCCHHHHHhccCCccceE
Confidence 4899999999999999999999 9999999999765321 111223344432 2222220 00000000111122
Q ss_pred hhcCCCCcc--cCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 102 FLSSKKSYK--IPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 102 ~~~~~~~~~--~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+.+..+... ++...+.. ..+...+.++|..|.+.|.+++. .+++++++++|++++.++++ +.|.+
T Consensus 73 ~~~~~g~~~~~~~~~~~~~-~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~--v~v~~--------- 139 (391)
T PRK07588 73 SVDPTGRRKADLNVDSFRR-MVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDG--VRVTF--------- 139 (391)
T ss_pred EEcCCCCEEEEecHHHccc-cCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCe--EEEEE---------
Confidence 222222111 11000110 00112468999999999998664 48999999999999875332 23444
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEE-EEeeCCCccCCCcEEEEeccCCCCCCC
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKE-LWTINPKLHKKGLVIHTIGWPLDYKTY 258 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~ 258 (561)
++|.++++|+||+|||.+|.+|+.+ ++.... +..+ .+... ................. | . ...
T Consensus 140 ------~~g~~~~~d~vIgADG~~S~vR~~~---~~~~~~--~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~-~--~~g 202 (391)
T PRK07588 140 ------ERGTPRDFDLVIGADGLHSHVRRLV---FGPERD--FEHY-LGCKVAACVVDGYRPRDERTYVL--Y-N--EVG 202 (391)
T ss_pred ------CCCCEEEeCEEEECCCCCccchhhc---cCCccc--eEEE-cCcEEEEEEcCCCCCCCCceEEE--E-e--CCC
Confidence 3466889999999999999998863 222211 1111 11111 11111111111112111 1 0 111
Q ss_pred ceEEEEEcCCCeEEEEEEecCCCCCCCCChHH---HH-HHhhhC----hhHHHhhcCCeeeeecceeeccCCCccCCeee
Q psy14496 259 GGGFLYHMENNQISIGYIISLDYKNPYLSPFE---EF-QRYKTH----PKICKILKGGKRISYGARTITTGGLQSLPEFI 330 (561)
Q Consensus 259 g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~---~~-~~~~~~----p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (561)
....++|.+++...+.+....+...+..+... .+ +.|... +.+.+.+.......+. .. ....+++|+
T Consensus 203 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~w~ 277 (391)
T PRK07588 203 RQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFD--VV---SQIRMDRWS 277 (391)
T ss_pred CEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchhee--ee---eeeccCccc
Confidence 23445677666554444433222222222222 12 222211 1222222222111110 00 012356788
Q ss_pred cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhhh
Q psy14496 331 FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMK 406 (561)
Q Consensus 331 ~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~ 406 (561)
.+|++|+|||||.++|+.|||+|+||+||..||+.|.... .+...+|+.|++.|+.. +...+..++.+..++.
T Consensus 278 ~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~--~~~~~al~~Y~~~R~~~-~~~~~~~~~~~~~~~~ 350 (391)
T PRK07588 278 RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG--GDHRRAFDAYEKRLRPF-IAGKQAAAAKFLSVFA 350 (391)
T ss_pred cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHH-HHHHHhhccccccccc
Confidence 8999999999999999999999999999999999997531 23323399999999876 5666777777777663
No 35
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.96 E-value=1e-27 Score=248.71 Aligned_cols=338 Identities=14% Similarity=0.111 Sum_probs=189.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC-CCCC--Cc-eeecceeChhhHHhh--ccccc-cCCccccc
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG-SELG--AH-ILSGAIIDPRSIFEL--FPKEK-LNKLFNTP 94 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~-~~~g--~~-~~~G~~~~~~~l~~l--~~~~~-~~~~~~~~ 94 (561)
.+||+||||||+||++|+.|++. |++|+|+|+. +.+. .. ...+..+.+++++-+ ++.|. .......+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 77 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES------DLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAP 77 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC------CCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCc
Confidence 68999999999999999999999 9999999996 3221 10 012334566554422 23332 10000011
Q ss_pred cchhhhhhhcCC--CCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14496 95 VIEERFLFLSSK--KSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 95 ~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
. ..+...+.. +...++....+ ....++.+.+..|.+.|.+.+.+ .|++++++++|+++..++++ +.|.+
T Consensus 78 ~--~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~- 149 (405)
T PRK08850 78 Y--IAMEVWEQDSFARIEFDAESMA---QPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTL- 149 (405)
T ss_pred c--cEEEEEeCCCCceEEEeccccC---CCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEE-
Confidence 1 112222211 11111110000 01226788999999999999877 47999999999999765433 33444
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEecc
Q psy14496 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGW 251 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (561)
++|.++++|+||+|||.+|.+|+. +++......... .++...+..+. .......+.+
T Consensus 150 --------------~~g~~~~a~lvIgADG~~S~vR~~----~~~~~~~~~~~~-~~~~~~v~~~~--~~~~~~~~~~-- 206 (405)
T PRK08850 150 --------------DNGQALTAKLVVGADGANSWLRRQ----MDIPLTHWDYGH-SALVANVRTVD--PHNSVARQIF-- 206 (405)
T ss_pred --------------CCCCEEEeCEEEEeCCCCChhHHH----cCCCeeEEeecc-EEEEEEEEccC--CCCCEEEEEE--
Confidence 346689999999999999999888 555432111111 12222222221 1222222222
Q ss_pred CCCCCCCceEEEEEcCC-CeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCe
Q psy14496 252 PLDYKTYGGGFLYHMEN-NQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 252 p~~~~~~g~~~~~~~~~-~~~~ig~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
...+...++|..+ +..++.+.......+ ...+..+..+.+.. .+...+..-+... ....+|.. ....++
T Consensus 207 ----~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~pl~-~~~~~~ 278 (405)
T PRK08850 207 ----TPQGPLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTA--EFDNRLGLCEVVG-ERQAFPLK-MRYARD 278 (405)
T ss_pred ----cCCCceEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhhCcEEEcc-cccEEecc-eeeccc
Confidence 1223334567654 455665554321100 00111111111110 0111111001110 00111111 122467
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC-C-ccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN-K-FNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 329 ~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~-~-~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|..+|++|+|||||.++|+.|||+|+||+||..||+.|...+..+. . ... |+.|+++++.. ....+..++.+.++|
T Consensus 279 ~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~~~ 357 (405)
T PRK08850 279 FVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAE-AAKMIAAMQGFRDLF 357 (405)
T ss_pred cccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999988764332 2 123 99999888765 455555665666655
No 36
>PRK07190 hypothetical protein; Provisional
Probab=99.96 E-value=1.6e-27 Score=250.36 Aligned_cols=329 Identities=14% Similarity=0.101 Sum_probs=186.4
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhh--ccccc----cCCcccc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL--FPKEK----LNKLFNT 93 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l--~~~~~----~~~~~~~ 93 (561)
+..+||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+++++++-+ ++.+. .+.+...
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~------Gi~V~llEr~~~~~~~-gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~ 75 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLC------GLNTVIVDKSDGPLEV-GRADALNARTLQLLELVDLFDELYPLGKPCNT 75 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHc------CCCEEEEeCCCccccc-ccceEeCHHHHHHHHhcChHHHHHhhCcccee
Confidence 3468999999999999999999999 9999999999876432 23345677765422 22221 1111110
Q ss_pred ccchhhhhhhcCCCCcccCCCCCC--ceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14496 94 PVIEERFLFLSSKKSYKIPSWILP--ICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
. ..+.....+......+. ........+.+.+..+++.|.+.+.+.|++++++++|+++.+++++. .+.+.
T Consensus 76 ~------~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~ 147 (487)
T PRK07190 76 S------SVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLS 147 (487)
T ss_pred E------EEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEEC
Confidence 0 00000000100000000 00001124567889999999999999999999999999998865542 23332
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeE-EEEeeCCCccCCCcEEEEec
Q psy14496 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIK-ELWTINPKLHKKGLVIHTIG 250 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 250 (561)
+|.+++||+||+|||.+|.+|++ +|+............+- .....+.+.. +... .+
T Consensus 148 ---------------~g~~v~a~~vVgADG~~S~vR~~----lgi~f~g~~~~~~~~~~d~~~~~~~~~~-~~~~--~~- 204 (487)
T PRK07190 148 ---------------NGERIQSRYVIGADGSRSFVRNH----FNVPFEIIRPQIIWAVIDGVIDTDFPKV-PEII--VF- 204 (487)
T ss_pred ---------------CCcEEEeCEEEECCCCCHHHHHH----cCCCccccccceeEEEEEEEEccCCCCC-cceE--EE-
Confidence 24589999999999999999888 66665322211111111 1111110110 1111 11
Q ss_pred cCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhh--ChhHHHhhcCCeeeeecceeeccCCCccCCe
Q psy14496 251 WPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKT--HPKICKILKGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
+ ...+..+++|..++...+-.. .+ .+..+..+..+.+.. .|. .+.- ..+.+.. .++. ......+
T Consensus 205 ~----~~~g~~~~~p~~~~~~r~~~~--~~--~~~~t~~~~~~~l~~~~~~~---~~~~-~~~~w~s-~~~~-~~r~a~~ 270 (487)
T PRK07190 205 Q----AETSDVAWIPREGEIDRFYVR--MD--TKDFTLEQAIAKINHAMQPH---RLGF-KEIVWFS-QFSV-KESVAEH 270 (487)
T ss_pred E----cCCCCEEEEECCCCEEEEEEE--cC--CCCCCHHHHHHHHHHhcCCC---CCce-EEEEEEE-Eeee-CcEehhh
Confidence 1 123345566776554432221 11 112222222222211 010 0110 1111111 1111 1122446
Q ss_pred ee-cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhcc
Q psy14496 329 FI-FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNF 401 (561)
Q Consensus 329 ~~-~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~ 401 (561)
+. .+||+|+|||||.++|..|||+|++|+||..|++.|+..+++......|+.|+++++.. ....+...+..
T Consensus 271 ~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~-a~~vl~~t~~~ 343 (487)
T PRK07190 271 FFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPV-AQGVIETSGEL 343 (487)
T ss_pred cCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 65 69999999999999999999999999999999999998876544322399999999864 33444444433
No 37
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.96 E-value=3.5e-27 Score=244.14 Aligned_cols=333 Identities=14% Similarity=0.140 Sum_probs=182.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccchhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~ 100 (561)
.-+|+|||||||||++|+.|++. |++|+|+||.+.+.. ...|..+.++++..+ ..+. .............+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~------G~~V~i~E~~~~~~~-~g~gi~l~~~~~~~L-~~~Gl~~~l~~~~~~~~~~ 73 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAAR------GWAVTIIEKAQELSE-VGAGLQLAPNAMRHL-ERLGVADRLSGTGVTPKAL 73 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCc-CCccceeChhHHHHH-HHCCChHHHhhcccCcceE
Confidence 46899999999999999999999 999999999876543 224555667665433 2222 00000000111111
Q ss_pred hhhcCCCC-ccc--CCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14496 101 LFLSSKKS-YKI--PSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 101 ~~~~~~~~-~~~--~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
.+.+.... ... ..............+.++|.+|.+.|.+.+.+ .+++++++++|+++..++++ +.|.+.+.
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~--- 148 (400)
T PRK06475 74 YLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRT--- 148 (400)
T ss_pred EEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeC---
Confidence 11111000 000 00000000001223468999999999999876 58999999999999765333 23333110
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCC--Ccc-----CCCcEEEEe
Q psy14496 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINP--KLH-----KKGLVIHTI 249 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~ 249 (561)
.++.++++|+||+|||.+|.+|+.+ +...... ..+ ..+...+..+. ..+ ..+.. +.
T Consensus 149 ---------~~~~~~~adlvIgADG~~S~vR~~~----~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 211 (400)
T PRK06475 149 ---------NSVETVSAAYLIACDGVWSMLRAKA----GFSKARF-SGH-IAWRTTLAADALPASFLSAMPEHKAV-SA- 211 (400)
T ss_pred ---------CCCcEEecCEEEECCCccHhHHhhc----CCCCCCc-CCc-eEEEEEeehhhcchhhhhhcccCCce-EE-
Confidence 1235789999999999999998883 3322111 111 22222222111 000 01111 11
Q ss_pred ccCCCCCCCceEEEEEcCCCeEEEEEEec-CC-----CCCCCCChHHHHHHhhh-ChhHHHhhcCCeeeeecceeeccCC
Q psy14496 250 GWPLDYKTYGGGFLYHMENNQISIGYIIS-LD-----YKNPYLSPFEEFQRYKT-HPKICKILKGGKRISYGARTITTGG 322 (561)
Q Consensus 250 ~~p~~~~~~g~~~~~~~~~~~~~ig~~~~-~~-----~~~~~~~~~~~~~~~~~-~p~~~~~l~~~~~~~~~~~~~~~~~ 322 (561)
| . +..+....||..++.....+... .. +..+ .......+.+.. .+.+..+++...... ..+...
T Consensus 212 -~-~--g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~i~~~~~~~----~~~l~~ 282 (400)
T PRK06475 212 -W-L--GNKAHFIAYPVKGGKFFNFVAITGGENPGEVWSKT-GDKAHLKSIYADWNKPVLQILAAIDEWT----YWPLFE 282 (400)
T ss_pred -E-E--cCCCEEEEEEccCCcEEEEEEEEcCCCCcccCCCC-CCHHHHHHHhcCCChHHHHHHhcCCcee----ECcCcc
Confidence 1 0 22333456677655332222111 11 1111 122222233332 244556654332211 111111
Q ss_pred CccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhh
Q psy14496 323 LQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKA 398 (561)
Q Consensus 323 ~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~ 398 (561)
....+.|..+|++|+|||||.++|+.|||+|+||+||..||+.|.. .+...+|+.|++.|+.. +...+..+
T Consensus 283 ~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~----~~~~~aL~~Ye~~R~~r-~~~~~~~s 353 (400)
T PRK06475 283 MADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS----DDQSAGLKRFDSVRKER-IAAVAKRG 353 (400)
T ss_pred cCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 1122344568999999999999999999999999999999998852 23333499999999865 34444444
No 38
>PRK06834 hypothetical protein; Provisional
Probab=99.96 E-value=1e-26 Score=244.51 Aligned_cols=317 Identities=14% Similarity=0.105 Sum_probs=179.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhh--ccccc-cCCccccccch
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL--FPKEK-LNKLFNTPVIE 97 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l--~~~~~-~~~~~~~~~~~ 97 (561)
.++||+||||||+||++|+.|++. |++|+||||.+.+......+..+.+++++.+ ++.+. .... ......
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~------G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~-~~~~~~ 74 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA------GVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQ-GQVAQV 74 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhc-CCcccc
Confidence 358999999999999999999999 9999999998764311112334667665432 22222 0000 000000
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccccccc
Q psy14496 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINK 177 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~ 177 (561)
..+ ....+....++. .....+.+.+..+++.|.+.+++.|++++++++|+++..++++ +.|.+.
T Consensus 75 ~~~------~~~~~~~~~~~~--~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~------ 138 (488)
T PRK06834 75 TGF------AATRLDISDFPT--RHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELS------ 138 (488)
T ss_pred cee------eeEecccccCCC--CCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEEC------
Confidence 000 000111001111 0122567889999999999999999999999999999876443 334442
Q ss_pred CCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCC
Q psy14496 178 EGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKT 257 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 257 (561)
+|.++++|+||+|||.+|.+|+. +|+..+.........+.. +.++.. +....+ ...
T Consensus 139 ---------~g~~i~a~~vVgADG~~S~vR~~----lgi~~~g~~~~~~~~~~d-v~~~~~---~~~~~~-------~~~ 194 (488)
T PRK06834 139 ---------DGRTLRAQYLVGCDGGRSLVRKA----AGIDFPGWDPTTSYLIAE-VEMTEE---PEWGVH-------RDA 194 (488)
T ss_pred ---------CCCEEEeCEEEEecCCCCCcHhh----cCCCCCCCCcceEEEEEE-EEecCC---CCccee-------eCC
Confidence 24589999999999999999877 666553322111111111 111111 000000 011
Q ss_pred CceEEEEEcC-CCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEE
Q psy14496 258 YGGGFLYHME-NNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAF 336 (561)
Q Consensus 258 ~g~~~~~~~~-~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 336 (561)
.+...+.|.. ++...+.+...........+..+..+.+... +..-+...... +. ..++. .....++|..+||+|
T Consensus 195 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g~~~~~~~~~-~~-~~~~~-~~r~a~~~~~gRV~L 269 (488)
T PRK06834 195 LGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLDDLREALIAV--YGTDYGIHSPT-WI-SRFTD-MARQAASYRDGRVLL 269 (488)
T ss_pred CceEEEeccCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHh--hCCCCccccce-eE-Eeccc-cceecccccCCcEEE
Confidence 2222233433 4455544432211111112222222222110 00000000111 10 01111 112356788899999
Q ss_pred EecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhc
Q psy14496 337 IGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQAS 389 (561)
Q Consensus 337 vGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~ 389 (561)
+|||||.++|+.|||+|++|+||..||+.|+..+.+......|+.|+++++..
T Consensus 270 aGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~ 322 (488)
T PRK06834 270 AGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPV 322 (488)
T ss_pred EeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999886444322399999999864
No 39
>PRK06996 hypothetical protein; Provisional
Probab=99.96 E-value=6.9e-27 Score=241.63 Aligned_cols=336 Identities=13% Similarity=0.118 Sum_probs=187.7
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCC----CcEEEEcCCCCCCCce-eecceeChhhHHh--hccccc-cCC
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKE----IKICVLEKGSELGAHI-LSGAIIDPRSIFE--LFPKEK-LNK 89 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G----~~V~ViEk~~~~g~~~-~~G~~~~~~~l~~--l~~~~~-~~~ 89 (561)
|-.+.+||+||||||+|+++|+.|++. | ++|+|+|+.+.+.... ..+..+.+.+++- .++.|. ...
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~------g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~ 80 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARR------SATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADAT 80 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcC------CCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCC
Confidence 456789999999999999999999998 7 4799999986543211 1244566666542 233343 111
Q ss_pred ccccccchhhhhhhcC--CCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEE
Q psy14496 90 LFNTPVIEERFLFLSS--KKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCG 167 (561)
Q Consensus 90 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~ 167 (561)
+.. .+...+. .+...+...... .+..+|.++|..|.+.|.+.+.+.|++++++++++++..++++ +.
T Consensus 81 ~~~------~~~~~~~~~~g~~~~~~~~~~---~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~ 149 (398)
T PRK06996 81 PIE------HIHVSQRGHFGRTLIDRDDHD---VPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VT 149 (398)
T ss_pred ccc------EEEEecCCCCceEEecccccC---CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EE
Confidence 111 1111111 011111111111 1123789999999999999999999999999999999765343 33
Q ss_pred EEecccccccCCceecccccCeEEecCEEEEccCC-CchhhHHHHHHcCCCCCCCCcccc-ceeEEEEeeCCCccCCCcE
Q psy14496 168 IATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS-RGHLSKQIIKKFNLDNKKDPQTYS-LGIKELWTINPKLHKKGLV 245 (561)
Q Consensus 168 V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~-~s~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 245 (561)
|.+.+. +| +.++++|+||+|||. +|.+++. ++...... .+. ..+...+.... ..++..
T Consensus 150 v~~~~~----~g--------~~~i~a~lvIgADG~~~s~~r~~----~~~~~~~~--~~~~~~~~~~v~~~~--~~~~~~ 209 (398)
T PRK06996 150 LALGTP----QG--------ARTLRARIAVQAEGGLFHDQKAD----AGDSARRR--DYGQTAIVGTVTVSA--PRPGWA 209 (398)
T ss_pred EEECCC----Cc--------ceEEeeeEEEECCCCCchHHHHH----cCCCceee--ecCCeEEEEEEEccC--CCCCEE
Confidence 444220 11 157999999999997 4666665 44443211 111 12222222211 122222
Q ss_pred EEEeccCCCCCCCceEEEEEcCCCe---EEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecce-eec
Q psy14496 246 IHTIGWPLDYKTYGGGFLYHMENNQ---ISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGAR-TIT 319 (561)
Q Consensus 246 ~~~~~~p~~~~~~g~~~~~~~~~~~---~~ig~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~-~~~ 319 (561)
...+. ..|...++|..++. .++.+....+... ...+..+..+.+.. .+...+ +........ .++
T Consensus 210 ~~~~~------~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~--~~~~~~~~~~~~~ 279 (398)
T PRK06996 210 WERFT------HEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGA--AFGTRM--GRFTRIAGRHAFP 279 (398)
T ss_pred EEEec------CCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHH--Hhcccc--CceEEecceEEEe
Confidence 22221 12223345665432 4443333211100 00111111111110 011111 111111111 112
Q ss_pred cCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhh
Q psy14496 320 TGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKAR 399 (561)
Q Consensus 320 ~~~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~ 399 (561)
.. ....++|..+|++|+|||||.++|+.|||+|+||+||..||+.|.. .+.....|+.|+++++.. +...+..++
T Consensus 280 l~-~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~---~~~~~~~L~~Y~~~R~~~-~~~~~~~s~ 354 (398)
T PRK06996 280 LG-LNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD---HGATPLALATFAARRALD-RRVTIGATD 354 (398)
T ss_pred ee-cccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 11 2335578889999999999999999999999999999999999964 233323399999999765 455566666
Q ss_pred ccchhh
Q psy14496 400 NFKPAM 405 (561)
Q Consensus 400 ~~~~~~ 405 (561)
.+.++|
T Consensus 355 ~l~~~~ 360 (398)
T PRK06996 355 LLPRLF 360 (398)
T ss_pred HHHHHH
Confidence 666666
No 40
>PRK06126 hypothetical protein; Provisional
Probab=99.96 E-value=4.2e-27 Score=253.07 Aligned_cols=329 Identities=14% Similarity=0.129 Sum_probs=181.1
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-------cCCc
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-------LNKL 90 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-------~~~~ 90 (561)
+.++.+||+||||||+||++|+.|++. |++|+||||.+.+.... .+..+++++++- +..+. .+.+
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~------G~~v~viEr~~~~~~~~-ra~~l~~r~~e~-L~~lGl~~~l~~~g~~ 74 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRR------GVDSILVERKDGTAFNP-KANTTSARSMEH-FRRLGIADEVRSAGLP 74 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCCCC-ccccCCHHHHHH-HHhcChHHHHHhhcCC
Confidence 346679999999999999999999999 99999999987643321 344567776643 23332 1111
Q ss_pred cccccchhhhhhhcC-CCC----cccCCCC----CC-----ceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEe
Q psy14496 91 FNTPVIEERFLFLSS-KKS----YKIPSWI----LP-----ICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSAS 155 (561)
Q Consensus 91 ~~~~~~~~~~~~~~~-~~~----~~~~~~~----~p-----~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~ 155 (561)
.... ....+... .+. +..+... .+ ........+.++|..|.+.|.+.+.+ .|++++++++|+
T Consensus 75 ~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~ 151 (545)
T PRK06126 75 VDYP---TDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLT 151 (545)
T ss_pred cccc---CCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEE
Confidence 1000 00001100 000 0000000 00 00001125678999999999999976 589999999999
Q ss_pred EEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEee
Q psy14496 156 EILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTI 235 (561)
Q Consensus 156 ~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 235 (561)
++..++++ +. +.+.+ ..+|+ ..++++|+||+|||++|.+|+. +++....... +...+...+..
T Consensus 152 ~i~~~~~~-v~-v~~~~---~~~g~-------~~~i~ad~vVgADG~~S~VR~~----lgi~~~g~~~-~~~~~~~~~~~ 214 (545)
T PRK06126 152 DFEQDADG-VT-ATVED---LDGGE-------SLTIRADYLVGCDGARSAVRRS----LGISYEGTSG-LQRDLSIYIRA 214 (545)
T ss_pred EEEECCCe-EE-EEEEE---CCCCc-------EEEEEEEEEEecCCcchHHHHh----cCCccccCCC-cceEEEEEEEc
Confidence 99876443 22 33321 01222 1478999999999999999887 5554322111 11112222222
Q ss_pred CC--CccCCCc-EEEEeccCCCCCCCceEEEEEcC-CCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCC---
Q psy14496 236 NP--KLHKKGL-VIHTIGWPLDYKTYGGGFLYHME-NNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGG--- 308 (561)
Q Consensus 236 ~~--~~~~~~~-~~~~~~~p~~~~~~g~~~~~~~~-~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~--- 308 (561)
+. ....... ..+.+.+| . ...++++.+ +..+.+. ...........+..+..+.+ +..+...
T Consensus 215 ~~l~~~~~~~~~~~~~~~~p---~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 282 (545)
T PRK06126 215 PGLAALVGHDPAWMYWLFNP---D--RRGVLVAIDGRDEWLFH-QLRGGEDEFTIDDVDARAFV------RRGVGEDIDY 282 (545)
T ss_pred CchHHHhcCCCceEEEEECC---C--ccEEEEEECCCCeEEEE-EecCCCCCCCCCHHHHHHHH------HHhcCCCCCe
Confidence 21 0111111 11221111 1 223344443 3333332 11111111112222222211 1222100
Q ss_pred eeeeecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhh
Q psy14496 309 KRISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQA 388 (561)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 388 (561)
+......+. ......++|..+||+|+|||||.++|+.|||+|+||+||..||+.|...+........|+.|+++|+.
T Consensus 283 ~i~~~~~w~---~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p 359 (545)
T PRK06126 283 EVLSVVPWT---GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRP 359 (545)
T ss_pred EEEeecccc---hhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhH
Confidence 111111111 11223567888999999999999999999999999999999999998876533322339999999986
Q ss_pred c
Q psy14496 389 S 389 (561)
Q Consensus 389 ~ 389 (561)
.
T Consensus 360 ~ 360 (545)
T PRK06126 360 I 360 (545)
T ss_pred H
Confidence 5
No 41
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.96 E-value=6.9e-27 Score=241.59 Aligned_cols=340 Identities=15% Similarity=0.137 Sum_probs=193.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce----eecceeChhhHHhhccccc-cCCc-ccc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----LSGAIIDPRSIFELFPKEK-LNKL-FNT 93 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~----~~G~~~~~~~l~~l~~~~~-~~~~-~~~ 93 (561)
.|.+||+|||||||||++|+.|++. |++|+|+||.+.+.... .....+.+++++.+ ..+. .... ...
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l-~~~g~~~~~~~~~ 75 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQS------GLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFL-ERLGVWQALDAAR 75 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCccccCCCCCCceEeecHHHHHHH-HHcCchhhhhhhc
Confidence 3678999999999999999999999 99999999998754310 01133556554422 2322 0000 000
Q ss_pred ccchhhhhhhcCC-CCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEec
Q psy14496 94 PVIEERFLFLSSK-KSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 94 ~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~g-v~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
......+.+.... ..+.+.... .......+.+++..|.+.|.+.+.+.| ++++ +++|+++..++++ +.|.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~ 149 (388)
T PRK07608 76 LAPVYDMRVFGDAHARLHFSAYQ---AGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLA 149 (388)
T ss_pred CCcceEEEEEECCCceeEeeccc---cCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEEC
Confidence 0011111111111 111111000 001122578999999999999998887 9998 9999998765332 345553
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEecc
Q psy14496 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGW 251 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (561)
+|.++++|+||+|||.+|.+++. +++.....+. ...++...++.+.. ......+.+
T Consensus 150 ---------------~g~~~~a~~vI~adG~~S~vr~~----~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~-- 205 (388)
T PRK07608 150 ---------------DGQVLRADLVVGADGAHSWVRSQ----AGIKAERRPY-RQTGVVANFKAERP--HRGTAYQWF-- 205 (388)
T ss_pred ---------------CCCEEEeeEEEEeCCCCchHHHh----cCCCcccccc-CCEEEEEEEEecCC--CCCEEEEEe--
Confidence 35579999999999999998776 5554322221 11223222332211 122222221
Q ss_pred CCCCCCCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCee
Q psy14496 252 PLDYKTYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEF 329 (561)
Q Consensus 252 p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (561)
...+..+++|.+++.+.+.+........ ...++.+..+.+... +...+..-..+. .....+. .....+.|
T Consensus 206 ----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 277 (388)
T PRK07608 206 ----RDDGILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERA--SGGRLGRLECVT-PAAGFPL-RLQRVDRL 277 (388)
T ss_pred ----cCCCCEEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HHHhcCCceecC-Ccceeec-chhhhhhh
Confidence 2233456779888877766554221100 001121222222110 111111111110 0011111 11235678
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCc--cchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKF--NKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 330 ~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~--~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
..+|++++|||||.++|+.|||+|+||+||..||+.|.......+.. ..|+.|++++++. +...++.++.+..++
T Consensus 278 ~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~-~~~~~~~~~~~~~~~ 354 (388)
T PRK07608 278 VAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARRED-ILALQVATDGLQRLF 354 (388)
T ss_pred hcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999998754222221 2399999999865 455566666666655
No 42
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.96 E-value=4.3e-27 Score=242.04 Aligned_cols=342 Identities=14% Similarity=0.122 Sum_probs=178.3
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC--CCceeecceeChhhHHhh--ccccccCCccccccc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL--GAHILSGAIIDPRSIFEL--FPKEKLNKLFNTPVI 96 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~--g~~~~~G~~~~~~~l~~l--~~~~~~~~~~~~~~~ 96 (561)
|.+||+||||||+||++|+.|++. |++|+||||.+.. ...... +.+.++++.-+ ++.|. ........
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~a-~~l~~~~~~~L~~lGl~~--~l~~~~~~ 71 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQSRDYVLGRIRA-GVLEQGTVDLLREAGVDE--RMDREGLV 71 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHC------CCCEEEEECCCCcccCCceeE-eeECHHHHHHHHHCCChH--HHHhcCce
Confidence 578999999999999999999999 9999999999853 122222 34666654422 22222 00000011
Q ss_pred hhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14496 97 EERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
...+.+........++ ++............+..+.+.|.+.+.+.|+.++++.+++.+...++. ...|.+..
T Consensus 72 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~-~~~V~~~~---- 143 (390)
T TIGR02360 72 HEGTEIAFDGQRFRID---LKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGD-RPYVTFER---- 143 (390)
T ss_pred ecceEEeeCCEEEEEe---ccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCC-ccEEEEEE----
Confidence 1111111111111111 111000011123457788999999988889999999988877542222 22344420
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCC-CccccceeEEEEeeCCCccCCCcEEEEeccCCCC
Q psy14496 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKD-PQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDY 255 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 255 (561)
+|+ ..++++|+||+|||.+|.+|+++ +...... ...+..++..+....+. ..... ...+
T Consensus 144 -~g~-------~~~i~adlvIGADG~~S~VR~~l----~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~-~~~~----- 203 (390)
T TIGR02360 144 -DGE-------RHRLDCDFIAGCDGFHGVSRASI----PAEVLKEFERVYPFGWLGILSETPP--VSHEL-IYSN----- 203 (390)
T ss_pred -CCe-------EEEEEeCEEEECCCCchhhHHhc----CcccceeeeccCCcceEEEecCCCC--CCCce-EEEe-----
Confidence 111 13689999999999999998883 2222110 11111222221111111 11111 1110
Q ss_pred CCCceEEEEEcC-CCeEEEEEEecCCCCCCCCChHHHHHHhh--hChhHHHhhcCCeeeeecceeeccCCCccCCeeecC
Q psy14496 256 KTYGGGFLYHME-NNQISIGYIISLDYKNPYLSPFEEFQRYK--THPKICKILKGGKRISYGARTITTGGLQSLPEFIFD 332 (561)
Q Consensus 256 ~~~g~~~~~~~~-~~~~~ig~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (561)
......+++.. ++...+-+........+........+.+. ..+.+.+.+..+.... ....+... ...++|..+
T Consensus 204 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~~~~g 279 (390)
T TIGR02360 204 -HERGFALCSMRSATRSRYYVQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIE--KSIAPLRS-FVCEPMQYG 279 (390)
T ss_pred -CCCceEEEeccCCCcceEEEEcCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCccc--eeeeeHHh-hccccCccC
Confidence 11111233332 11111111211111011111111111111 1122333332221110 01111111 124567789
Q ss_pred CEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 333 GGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 333 ~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|++|+|||||.++|+.|||+|+||+||..||+.|..... .....+|+.|++.++++ +....+.++.+.+++
T Consensus 280 rvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~-~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~ 350 (390)
T TIGR02360 280 RLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ-EGSSAGIEGYSARALAR-VWKAERFSWWMTSLL 350 (390)
T ss_pred CEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999976543 22323499999988865 456666676666665
No 43
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.96 E-value=1.3e-27 Score=246.80 Aligned_cols=339 Identities=13% Similarity=0.095 Sum_probs=186.1
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHh--hccccccCCccccccc
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFE--LFPKEKLNKLFNTPVI 96 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~--l~~~~~~~~~~~~~~~ 96 (561)
++..+||+||||||+||++|+.|++. |++|+|||+.+.+.. .. +..+.+.++.- .++.|.. .......
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~------G~~v~liE~~~~~~~-~r-~~~l~~~s~~~l~~lgl~~~--~~~~~~~ 73 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARA------GASVALVAPEPPYAD-LR-TTALLGPSIRFLERLGLWAR--LAPHAAP 73 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcC------CCeEEEEeCCCCCCC-cc-hhhCcHHHHHHHHHhCchhh--hHhhcce
Confidence 34568999999999999999999999 999999999876532 11 22344444321 1222320 0001111
Q ss_pred hhhhhhhcCCCCc-ccCCCCCCc--eeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEecc
Q psy14496 97 EERFLFLSSKKSY-KIPSWILPI--CFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNN 172 (561)
Q Consensus 97 ~~~~~~~~~~~~~-~~~~~~~p~--~~~~~~~~~i~r~~l~~~L~~~a~~~g-v~i~~g~~v~~i~~~~~g~v~~V~~~~ 172 (561)
...+.+.+..+.. ..+...+.. ......+|.+++..+.+.|.+.+.+.+ +. +++++|+++..++++ +.|.+.
T Consensus 74 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~- 149 (388)
T PRK07494 74 LQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLA- 149 (388)
T ss_pred eeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEEC-
Confidence 1122222221111 000000000 001123688999999999999998764 55 789999999765333 234442
Q ss_pred cccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCC-ccccceeEEEEeeCCCccCCCcEEEEecc
Q psy14496 173 FGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDP-QTYSLGIKELWTINPKLHKKGLVIHTIGW 251 (561)
Q Consensus 173 ~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (561)
+|.++++|+||+|||.+|.+|+. +++...... ... ++...+..+ ..........+
T Consensus 150 --------------~g~~~~a~~vI~AdG~~S~vr~~----~g~~~~~~~~~~~--~~~~~v~~~--~~~~~~~~~~~-- 205 (388)
T PRK07494 150 --------------DGTTLSARLVVGADGRNSPVREA----AGIGVRTWSYPQK--ALVLNFTHS--RPHQNVSTEFH-- 205 (388)
T ss_pred --------------CCCEEEEeEEEEecCCCchhHHh----cCCCceecCCCCE--EEEEEEecc--CCCCCEEEEEe--
Confidence 35689999999999999999877 555432111 111 111111111 11112222221
Q ss_pred CCCCCCCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCee
Q psy14496 252 PLDYKTYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEF 329 (561)
Q Consensus 252 p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (561)
...|..+++|..++..++.+....+... ...+..+..+.+.. .+.+++...+... .....+.. ....++|
T Consensus 206 ----~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-~~~~~~l~-~~~~~~~ 277 (388)
T PRK07494 206 ----TEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEE--RMQSMLGKLTLEP-GRQAWPLS-GQVAHRF 277 (388)
T ss_pred ----CCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhcCCeEEcc-CCcEeech-HHHHHhh
Confidence 1223355678766666555443221100 01111111122211 1222322111110 11111211 1123467
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 330 ~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
..+|++++|||||.++|+.|||+|+||+||..||+.|.+... +..... |+.|+++|+.. +...+.....+.+.|
T Consensus 278 ~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~-~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 352 (388)
T PRK07494 278 AAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPE-DPGSAAVLAAYDRARRPD-ILSRTASVDLLNRSL 352 (388)
T ss_pred ccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999977322 222233 99999999865 334444444444444
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=99.96 E-value=7.5e-27 Score=246.96 Aligned_cols=368 Identities=15% Similarity=0.164 Sum_probs=200.2
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhh--ccccccCCcccccc
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL--FPKEKLNKLFNTPV 95 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l--~~~~~~~~~~~~~~ 95 (561)
+...++||+||||||+|+++|+.|++. |++|+|+|+.+........|..+.|.++..+ ++.|..-......
T Consensus 29 ~~~~~~dViIVGaGiaGlalA~aLar~------G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~- 101 (567)
T PTZ00367 29 RTNYDYDVIIVGGSIAGPVLAKALSKQ------GRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMP- 101 (567)
T ss_pred ccccCccEEEECCCHHHHHHHHHHHhc------CCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcc-
Confidence 344679999999999999999999999 9999999998621111124666777765533 2222200011111
Q ss_pred chhhhhhhcCCCC-cccCCCCCCceeecCCcEEeeHHHHHHHHHHHH---HHCCCEEEcCceEeEEEEcCC---CCEEEE
Q psy14496 96 IEERFLFLSSKKS-YKIPSWILPICFKNHGNYIISLSDLVRWMGKKA---ENMGIDIFSGFSASEILYDSK---NNVCGI 168 (561)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a---~~~gv~i~~g~~v~~i~~~~~---g~v~~V 168 (561)
...+.+.+.++. ..++ ++ ....++.+++++|.+.|.+.+ ...+++++. .+|+++..+++ .++.+|
T Consensus 102 -~~~~~v~~~~G~~~~i~---~~---~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV 173 (567)
T PTZ00367 102 -CFGYVVFDHKGKQVKLP---YG---AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGV 173 (567)
T ss_pred -eeeeEEEECCCCEEEec---CC---CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEE
Confidence 112222222221 1111 11 112356788999999999887 346899965 47888765432 236677
Q ss_pred Eeccccc----------ccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCC--CCCccccceeEEEEeeC
Q psy14496 169 ATNNFGI----------NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNK--KDPQTYSLGIKELWTIN 236 (561)
Q Consensus 169 ~~~~~~~----------~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~--~~~~~~~~~~~~~~~~~ 236 (561)
++...+. ..+.+......++.+++||+||+|||.+|.+|+++ +.... ...+.+ .+.. +....
T Consensus 174 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l----~~~~~~~~~~s~~-~g~~-~~~~~ 247 (567)
T PTZ00367 174 EYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRY----QHYTPASENHSHF-VGLV-LKNVR 247 (567)
T ss_pred EEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHc----cCCCCCcCcceEE-EEEE-Eeccc
Confidence 6543210 00011123344577899999999999999999884 33221 111111 1211 01111
Q ss_pred CCccCCCcEEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCC-ChHHHHHHh-hh--ChhHHHhh----cCC
Q psy14496 237 PKLHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYL-SPFEEFQRY-KT--HPKICKIL----KGG 308 (561)
Q Consensus 237 ~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~-~~~~~~~~~-~~--~p~~~~~l----~~~ 308 (561)
.+ .++.. +.+ + +..+-.++||.+++...+.+...... .+.. ...+.+... .. .+.+.+.+ ...
T Consensus 248 lp--~~~~~-~v~---~--g~~gpi~~yPl~~~~~r~lv~~~~~~-~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~ 318 (567)
T PTZ00367 248 LP--KEQHG-TVF---L--GKTGPILSYRLDDNELRVLVDYNKPT-LPSLEEQSEWLIEDVAPHLPENMRESFIRASKDT 318 (567)
T ss_pred CC--CCCee-EEE---E--cCCceEEEEEcCCCeEEEEEEecCCc-CCChHHHHHHHHHhhcccCcHHHHHHHHHhhccc
Confidence 11 11111 221 1 23344678899888777665543221 1111 111222211 10 11222222 111
Q ss_pred eeeeecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHh--cCCC------ccchh
Q psy14496 309 KRISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKIC--SNNK------FNKLI 380 (561)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~--~~~~------~~~l~ 380 (561)
..+ +..+...+ +...+..+|++|+|||||.++|+.|||+|+||+||..||+.|..... ..+. ...|+
T Consensus 319 ~~l----~~~p~~~~-p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~ 393 (567)
T PTZ00367 319 KRI----RSMPNARY-PPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQ 393 (567)
T ss_pred CCe----EEeeHhhC-CCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHH
Confidence 111 11121111 12245678999999999999999999999999999999999975321 0111 11266
Q ss_pred ----hHHHHHhhchhhHhhhhhhccchhhhhhhhHHHHHHHHHHHHhcC
Q psy14496 381 ----TYKTSFQASWLYKELYKARNFKPAMKKGLYIGMLIIGIDQILFSG 425 (561)
Q Consensus 381 ----~y~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 425 (561)
.|++.|+.. .......++.+.++|.. ..+..+...++..|
T Consensus 394 ~~~~~Y~~~Rk~~-a~~i~~ls~aL~~lf~~----~~lr~~~~~y~~~g 437 (567)
T PTZ00367 394 AAILSYARNRKTH-ASTINILSWALYSVFSS----PALRDACLDYFSLG 437 (567)
T ss_pred HhHHHHHHHhhhh-HHHHHHHHHHHHHHhCh----HHHHHHHHHHHhcC
Confidence 999888865 34555566666666643 22444444554433
No 45
>PRK06847 hypothetical protein; Provisional
Probab=99.96 E-value=1e-26 Score=239.19 Aligned_cols=335 Identities=15% Similarity=0.132 Sum_probs=186.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccchhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~ 100 (561)
..||+|||||||||++|+.|++. |++|+|||+.+.+... ..|..+.+.++..+ ..+. .............+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~~-g~g~~l~~~~~~~l-~~~gl~~~~~~~~~~~~~~ 75 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA------GIAVDLVEIDPEWRVY-GAGITLQGNALRAL-RELGVLDECLEAGFGFDGV 75 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCccC-CceeeecHHHHHHH-HHcCCHHHHHHhCCCccce
Confidence 57999999999999999999999 9999999999875432 23445666655432 2221 00000000011112
Q ss_pred hhhcCCCCcccCCCCCCcee--ecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccC
Q psy14496 101 LFLSSKKSYKIPSWILPICF--KNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKE 178 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~--~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~ 178 (561)
.+.+..+..... ...+... .......++|..|.+.|.+.+.+.|++++++++|+++..+++ . +.|.+
T Consensus 76 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~-~~v~~-------- 144 (375)
T PRK06847 76 DLFDPDGTLLAE-LPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD-G-VTVTF-------- 144 (375)
T ss_pred EEECCCCCEEEe-cCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-E-EEEEE--------
Confidence 222222111100 0000000 002245689999999999999888999999999999976533 2 33444
Q ss_pred CceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccc-eeEEEEeeCCCccCCCcEEEEeccCCCCCC
Q psy14496 179 GIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSL-GIKELWTINPKLHKKGLVIHTIGWPLDYKT 257 (561)
Q Consensus 179 g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 257 (561)
++|.++++|+||+|||.+|.+|+.+. +.... +...+. .+... ++......... . |. +.
T Consensus 145 -------~~g~~~~ad~vI~AdG~~s~~r~~l~---~~~~~--~~~~g~~~~~~~--~~~~~~~~~~~-~---~~---~~ 203 (375)
T PRK06847 145 -------SDGTTGRYDLVVGADGLYSKVRSLVF---PDEPE--PEYTGQGVWRAV--LPRPAEVDRSL-M---YL---GP 203 (375)
T ss_pred -------cCCCEEEcCEEEECcCCCcchhhHhc---CCCCC--ceeccceEEEEE--ecCCCCccceE-E---Ee---CC
Confidence 34568999999999999999988752 22211 111111 11111 12111111111 1 10 11
Q ss_pred CceEEEEEcCCCeEEEEEEecCCCCCCCCCh---HHHHHH-hhhC--hhHHHhh---cCCeeeeecceeeccCCCccCCe
Q psy14496 258 YGGGFLYHMENNQISIGYIISLDYKNPYLSP---FEEFQR-YKTH--PKICKIL---KGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 258 ~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~---~~~~~~-~~~~--p~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
.+...++|.+++...+.+..... ..+.... .+.+++ +... |.+..+. .....+.+ .+.......++
T Consensus 204 ~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 278 (375)
T PRK06847 204 TTKAGVVPLSEDLMYLFVTEPRP-DNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVY----RPLETLLVPAP 278 (375)
T ss_pred CcEEEEEcCCCCeEEEEEeccCc-ccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceee----ccHhhccCCCC
Confidence 22234557655544333222211 1111111 122222 2211 1222222 11111111 11111112346
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 329 ~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|..+|++|+|||||.++|+.|||+|+||+||..||+.|.+. .....+|+.|++++++. +...+..++.+..++
T Consensus 279 ~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~---~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~ 351 (375)
T PRK06847 279 WHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH---DSLEAALQAYYARRWER-CRMVVEASARIGRIE 351 (375)
T ss_pred ccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHH-HHHHHHHHHHhhhee
Confidence 88899999999999999999999999999999999998652 23323499999999865 455566666666554
No 46
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.96 E-value=6.6e-27 Score=243.32 Aligned_cols=341 Identities=14% Similarity=0.147 Sum_probs=190.1
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCC-CcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcccc-----ccc
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKE-IKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNT-----PVI 96 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G-~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~-----~~~ 96 (561)
.+|+|||||||||++|+.|++. | ++|+||||++.++. ...|..+.+.++..+ ..+.....+.. ...
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~------g~~~v~v~Er~~~~~~-~G~gi~l~~~~~~~L-~~lg~~~~~~~~~~~~~~~ 72 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH------SHLNVQLFEAAPAFGE-VGAGVSFGANAVRAI-VGLGLGEAYTQVADSTPAP 72 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEecCCcCCC-CccceeeCccHHHHH-HHcCChhHHHHHhcCCCcc
Confidence 3699999999999999999999 8 59999999987653 223445677665533 22221000000 000
Q ss_pred hhh--hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14496 97 EER--FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 97 ~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
... +.+.+........ .... ...+...++|.+|.+.|.+.+. +..++++++|+++..++++ +.|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--~~v~~---- 140 (414)
T TIGR03219 73 WQDIWFEWRNGSDASYLG-ATIA---PGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEE--VQVLF---- 140 (414)
T ss_pred CcceeEEEEecCccceee-eecc---ccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCc--EEEEE----
Confidence 000 0111110000000 0000 0122346899999999998763 3568899999999865333 33443
Q ss_pred cccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCcccc-ceeEEEEeeCC---C----ccCCCc--
Q psy14496 175 INKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYS-LGIKELWTINP---K----LHKKGL-- 244 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~~~~---~----~~~~~~-- 244 (561)
++|.++++|+||+|||.+|.+|+.+....+.. ...+...+ ..+..++.... . ...+..
T Consensus 141 -----------~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~-~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 208 (414)
T TIGR03219 141 -----------TDGTEYRCDLLIGADGIKSALRDYVLQGQGQA-PVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVD 208 (414)
T ss_pred -----------cCCCEEEeeEEEECCCccHHHHHHhcCccCCC-CCCccccCcEEEEEEeeHHHHhhhhccccccccccc
Confidence 44678999999999999999998865322211 11121111 22222221110 0 000000
Q ss_pred EEEEeccCCCCCCCceEEEEEcCCCeE-EEEEEecCC------CC-----CCCCChHHHHHHhhh-ChhHHHhhcCCeee
Q psy14496 245 VIHTIGWPLDYKTYGGGFLYHMENNQI-SIGYIISLD------YK-----NPYLSPFEEFQRYKT-HPKICKILKGGKRI 311 (561)
Q Consensus 245 ~~~~~~~p~~~~~~g~~~~~~~~~~~~-~ig~~~~~~------~~-----~~~~~~~~~~~~~~~-~p~~~~~l~~~~~~ 311 (561)
.... | . +..+..+.||..++.. .+....... +. .......+.++.|.. +|.+.++++.....
T Consensus 209 ~~~~--~-~--~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~ 283 (414)
T TIGR03219 209 VPQM--Y-L--GLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAP 283 (414)
T ss_pred cceE--E-E--cCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCC
Confidence 0011 1 1 2223344567655443 222221110 00 011123334445442 35566666433221
Q ss_pred eecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhc-CCCccchhhHHHHHhhch
Q psy14496 312 SYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICS-NNKFNKLITYKTSFQASW 390 (561)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~-~~~~~~l~~y~~~~~~~~ 390 (561)
.. ..+. ....+++|+.+|++|+|||||.|+|+.|||+|+||+||..||+.|...... .+...+|+.|++.|++.
T Consensus 284 ~~--~~~~--~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r- 358 (414)
T TIGR03219 284 TL--WALH--DLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPR- 358 (414)
T ss_pred Cc--eeee--ecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHH-
Confidence 11 1111 122467899999999999999999999999999999999999999765322 22323499999999876
Q ss_pred hhHhhhhhhccchhh
Q psy14496 391 LYKELYKARNFKPAM 405 (561)
Q Consensus 391 ~~~~~~~~~~~~~~~ 405 (561)
+.+.++.++.+.+++
T Consensus 359 ~~~~~~~s~~~~~~~ 373 (414)
T TIGR03219 359 ACRVQRTSREAGELY 373 (414)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666666665544
No 47
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.96 E-value=2.3e-26 Score=237.75 Aligned_cols=338 Identities=14% Similarity=0.073 Sum_probs=186.4
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-----eecceeChhhHHhh--ccccc-cCCcc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-----LSGAIIDPRSIFEL--FPKEK-LNKLF 91 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-----~~G~~~~~~~l~~l--~~~~~-~~~~~ 91 (561)
...+||+||||||||+++|+.|++. |++|+|||+.+...... .....+.+.++..+ ++.|. .....
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~------G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~ 76 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQH------GFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMR 76 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcC------CCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhh
Confidence 4569999999999999999999999 99999999986432110 01123455554321 23232 00000
Q ss_pred ccccchhhhhhhc-CCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEE
Q psy14496 92 NTPVIEERFLFLS-SKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIA 169 (561)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-gv~i~~g~~v~~i~~~~~g~v~~V~ 169 (561)
..... .+.... ....+.+...... ....+|.++|..|.+.|.+.+.+. |++++++++|+++..++++ +.|.
T Consensus 77 ~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~ 149 (391)
T PRK08020 77 SHPYR--RLETWEWETAHVVFDAAELK---LPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELT 149 (391)
T ss_pred Ccccc--eEEEEeCCCCeEEecccccC---CCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEE
Confidence 00000 000000 0111111100000 012367899999999999998775 9999999999999765332 3444
Q ss_pred ecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEe
Q psy14496 170 TNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTI 249 (561)
Q Consensus 170 ~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (561)
+. +|.++++|+||+|||.+|.+|+. +++...... ....++......+. ...+..++.+
T Consensus 150 ~~---------------~g~~~~a~~vI~AdG~~S~vR~~----~~~~~~~~~-y~~~~~~~~~~~~~--~~~~~~~~~~ 207 (391)
T PRK08020 150 LA---------------DGEEIQAKLVIGADGANSQVRQM----AGIGVHGWQ-YRQSCMLISVKCEN--PPGDSTWQQF 207 (391)
T ss_pred EC---------------CCCEEEeCEEEEeCCCCchhHHH----cCCCccccC-CCceEEEEEEEecC--CCCCEEEEEE
Confidence 42 35689999999999999999887 454432110 00111111122221 1222233332
Q ss_pred ccCCCCCCCceEEEEEcCCCeEEEEEEecCCCC-C-CCCChHHHHH-HhhhChhHHHhhcCCeeeeecceeeccCCCccC
Q psy14496 250 GWPLDYKTYGGGFLYHMENNQISIGYIISLDYK-N-PYLSPFEEFQ-RYKTHPKICKILKGGKRISYGARTITTGGLQSL 326 (561)
Q Consensus 250 ~~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~-~-~~~~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (561)
.+ .+...++|..++..++.+....... . ...+. +.+. .+.. .+.+.+. +........+|.. ....
T Consensus 208 ~~------~g~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~l~~--~~~~~~~--~~~~~~~~~~pl~-~~~~ 275 (391)
T PRK08020 208 TP------SGPRAFLPLFDNWASLVWYDSPARIRQLQAMSM-AQLQQEIAA--HFPARLG--AVTPVAAGAFPLT-RRHA 275 (391)
T ss_pred cC------CCCEEEeECCCCcEEEEEECCHHHHHHHHCCCH-HHHHHHHHH--Hhhhhcc--ceEeccccEeecc-eeeh
Confidence 11 1223356776666666554321100 0 00111 1221 1111 0111111 1111111122221 1235
Q ss_pred CeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC-C-ccc-hhhHHHHHhhchhhHhhhhhhccch
Q psy14496 327 PEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN-K-FNK-LITYKTSFQASWLYKELYKARNFKP 403 (561)
Q Consensus 327 ~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~-~-~~~-l~~y~~~~~~~~~~~~~~~~~~~~~ 403 (561)
++|..+|++|+|||||.++|+.|||+|+||+||..||+.|.+....+. . ... |+.|++.++.. ....+.....+.+
T Consensus 276 ~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~ 354 (391)
T PRK08020 276 LQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMAD-NLLMQSGMDLFYA 354 (391)
T ss_pred hhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999988754332 2 223 99999988865 2333334443444
Q ss_pred hh
Q psy14496 404 AM 405 (561)
Q Consensus 404 ~~ 405 (561)
.|
T Consensus 355 ~~ 356 (391)
T PRK08020 355 GF 356 (391)
T ss_pred HH
Confidence 44
No 48
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.96 E-value=1.1e-26 Score=238.93 Aligned_cols=333 Identities=13% Similarity=0.121 Sum_probs=180.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-----eecceeChhhHHhh--ccccc-cCCcccc
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-----LSGAIIDPRSIFEL--FPKEK-LNKLFNT 93 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-----~~G~~~~~~~l~~l--~~~~~-~~~~~~~ 93 (561)
.+||+||||||+||++|+.|++. |++|+|||+.+...... .....+.+.++.-+ ++.|. .......
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~ 76 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ------GRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVC 76 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC------CCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCC
Confidence 48999999999999999999999 99999999875321100 01124666655432 33332 1000000
Q ss_pred ccchhhhhhhcC-CCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14496 94 PVIEERFLFLSS-KKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 94 ~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
+.. .+..... .....+....+. ....+|.+.+..|.+.|.+++.+ .|++++++++|++++.++++ +.|.+
T Consensus 77 ~~~--~~~~~~~~~~~~~~~~~~~~---~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~- 148 (384)
T PRK08849 77 PYK--RLETWEHPECRTRFHSDELN---LDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTL- 148 (384)
T ss_pred ccc--eEEEEeCCCceEEecccccC---CCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEE-
Confidence 111 1111111 111111100010 01125778888899999998866 57999999999999876443 23444
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCC-CccccceeEEEEeeCCCccCCCcEEEEec
Q psy14496 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKD-PQTYSLGIKELWTINPKLHKKGLVIHTIG 250 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (561)
++|.++++|+||+|||.+|.+|+. +++..... ...+++. ..+.......+..+..+
T Consensus 149 --------------~~g~~~~~~lvIgADG~~S~vR~~----~gi~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~- 205 (384)
T PRK08849 149 --------------ESGAEIEAKWVIGADGANSQVRQL----AGIGITAWDYRQHCML----INVETEQPQQDITWQQF- 205 (384)
T ss_pred --------------CCCCEEEeeEEEEecCCCchhHHh----cCCCceeccCCCeEEE----EEEEcCCCCCCEEEEEe-
Confidence 346789999999999999999888 45443211 1111111 11111111222222221
Q ss_pred cCCCCCCCceEEEEEcCCCeEEEEEEecCC-C-CCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCe
Q psy14496 251 WPLDYKTYGGGFLYHMENNQISIGYIISLD-Y-KNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~-~-~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
+|. |...++|..++..++-+..... . .....++.+..+.+... +...+..-+.... ...+. .....++
T Consensus 206 ~~~-----g~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~--~~~~l-~~~~~~~ 275 (384)
T PRK08849 206 TPS-----GPRSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRH--FPAELGEIKVLQH--GSFPL-TRRHAQQ 275 (384)
T ss_pred CCC-----CCEEEeEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHH--hhhhhCcEEeccc--eEeec-cccccch
Confidence 211 1112356544433333321110 0 00011222222222211 1111111111111 11111 1223568
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 329 ~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|..+|++|+|||||.|+|+.|||+|+||+||..|++.|... +..... |+.|++.++.. ....+...+.+.++|
T Consensus 276 ~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~ 349 (384)
T PRK08849 276 YVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---GVLNDASFARYERRRRPD-NLLMQTGMDLFYKTF 349 (384)
T ss_pred hccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999887532 222233 99999999865 344455555555555
No 49
>PLN02985 squalene monooxygenase
Probab=99.95 E-value=8.6e-26 Score=238.04 Aligned_cols=344 Identities=17% Similarity=0.222 Sum_probs=192.0
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhh--ccccc-cCCccccc
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL--FPKEK-LNKLFNTP 94 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l--~~~~~-~~~~~~~~ 94 (561)
+.+..+||+||||||+|+++|+.|++. |++|+|+||....... ..|..+.|.++..+ ++.+. ......
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~------G~~V~vlEr~~~~~~~-~~g~~L~p~g~~~L~~LGl~d~l~~~~~-- 109 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKD------GRRVHVIERDLREPER-MMGEFMQPGGRFMLSKLGLEDCLEGIDA-- 109 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHc------CCeEEEEECcCCCCcc-ccccccCchHHHHHHHcCCcchhhhccC--
Confidence 455679999999999999999999999 9999999998643222 24666777654422 22222 000000
Q ss_pred cchhhhhhhcCCCCcccCCCCCCcee----ecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEE
Q psy14496 95 VIEERFLFLSSKKSYKIPSWILPICF----KNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIA 169 (561)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~i~r~~l~~~L~~~a~~~-gv~i~~g~~v~~i~~~~~g~v~~V~ 169 (561)
.....+...........+ ++... ....++.++|.+|.+.|.+++.+. |++++.+ +++++..+ ++.+.+|+
T Consensus 110 ~~~~~~~v~~~g~~~~~~---~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~ 184 (514)
T PLN02985 110 QKATGMAVYKDGKEAVAP---FPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVT 184 (514)
T ss_pred cccccEEEEECCEEEEEe---CCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEE
Confidence 011122222221111111 11100 012257899999999999999775 7999866 57777654 55666777
Q ss_pred ecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEe
Q psy14496 170 TNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTI 249 (561)
Q Consensus 170 ~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (561)
..+ .+|+. .++.||+||+|||.+|.+|+.+ +...... ..+..++. ........++.. |.+
T Consensus 185 ~~~----~dG~~-------~~~~AdLVVgADG~~S~vR~~l----~~~~~~~-~s~~~~~~---~~~~~~~~~~~~-~~~ 244 (514)
T PLN02985 185 YKN----SAGEE-------TTALAPLTVVCDGCYSNLRRSL----NDNNAEV-LSYQVGYI---SKNCRLEEPEKL-HLI 244 (514)
T ss_pred EEc----CCCCE-------EEEECCEEEECCCCchHHHHHh----ccCCCcc-eeEeEEEE---EccccCCCCCcc-eEE
Confidence 632 12321 2567999999999999999884 3322111 11212221 111111112211 221
Q ss_pred ccCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhh------h-ChhHHHhhcCC-eeeeecceeeccC
Q psy14496 250 GWPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYK------T-HPKICKILKGG-KRISYGARTITTG 321 (561)
Q Consensus 250 ~~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~------~-~p~~~~~l~~~-~~~~~~~~~~~~~ 321 (561)
+ +..+...+||.+++.+.+.+....+.. |.... ..+..+. . .+.+.+.+..+ +.. ...+..+..
T Consensus 245 ---~--~~~~~~l~ypi~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~-~~~~~~p~~ 316 (514)
T PLN02985 245 ---M--SKPSFTMLYQISSTDVRCVFEVLPDNI-PSIAN-GEMSTFVKNTIAPQVPPKLRKIFLKGIDEG-AHIKVVPTK 316 (514)
T ss_pred ---c--CCCceEEEEEeCCCeEEEEEEEeCCCC-CCcCh-hhHHHHHHhccccccCHHHHHHHHhhcccc-cceeecCcc
Confidence 1 223335577777666665555433221 11111 1222221 1 12333333210 000 001111111
Q ss_pred CCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHh--c-CCCccchhhHHHHHhhchhhHhhhhh
Q psy14496 322 GLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKIC--S-NNKFNKLITYKTSFQASWLYKELYKA 398 (561)
Q Consensus 322 ~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~--~-~~~~~~l~~y~~~~~~~~~~~~~~~~ 398 (561)
......+..+|++|+|||||.++|+.|||+|+|++|+..|++.|...-. . .+....|+.|+..|+.. +..-...+
T Consensus 317 -~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r-~~~i~~la 394 (514)
T PLN02985 317 -RMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM-SATVNTLG 394 (514)
T ss_pred -cccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc-hhHHHHHH
Confidence 1112234458999999999999999999999999999999999965211 1 11122399999988865 45556667
Q ss_pred hccchhh
Q psy14496 399 RNFKPAM 405 (561)
Q Consensus 399 ~~~~~~~ 405 (561)
+.+.+.|
T Consensus 395 ~al~~~f 401 (514)
T PLN02985 395 NAFSQVL 401 (514)
T ss_pred HHHHHHH
Confidence 7776666
No 50
>PRK07236 hypothetical protein; Provisional
Probab=99.95 E-value=1.1e-26 Score=239.47 Aligned_cols=318 Identities=13% Similarity=0.106 Sum_probs=170.8
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
++..+|+||||||+||++|+.|++. |++|+||||.+.+......|..+.+..++ .+..+..............
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~g~gi~l~~~~~~-~l~~lg~~~~~~~~~~~~~ 76 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA------GWDVDVFERSPTELDGRGAGIVLQPELLR-ALAEAGVALPADIGVPSRE 76 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCcCCCCceeEeCHHHHH-HHHHcCCCcccccccCccc
Confidence 4568999999999999999999999 99999999987542222234456666544 3333331000011111111
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
..+.+..+.. +.... .....+.+..+.+.|.+.+ .+++++++++|++++.++++ +.|.+
T Consensus 77 ~~~~~~~g~~-~~~~~-------~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~--v~v~~--------- 135 (386)
T PRK07236 77 RIYLDRDGRV-VQRRP-------MPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDR--VTARF--------- 135 (386)
T ss_pred eEEEeCCCCE-eeccC-------CCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCe--EEEEE---------
Confidence 1122222111 11000 1112356778888887654 35789999999999875332 23433
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEe---eCCCcc--CCCcEEEEeccCCC
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWT---INPKLH--KKGLVIHTIGWPLD 254 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~p~~ 254 (561)
++|.++++|+||+|||.+|.+|+.+. +.... ....+ ..+..+.. ++.... ..... +.+ .
T Consensus 136 ------~~g~~~~ad~vIgADG~~S~vR~~l~---~~~~~-~~~g~-~~~~~~v~~~~~~~~~~~~~~~~~-~~~---~- 199 (386)
T PRK07236 136 ------ADGRRETADLLVGADGGRSTVRAQLL---PDVRP-TYAGY-VAWRGLVDEAALPPEARAALRDRF-TFQ---L- 199 (386)
T ss_pred ------CCCCEEEeCEEEECCCCCchHHHHhC---CCCCC-CcCCe-EEEEEecchHHcCchhhhhcccce-EEE---E-
Confidence 45678999999999999999988853 21111 11111 11111111 111000 00001 110 0
Q ss_pred CCCCceEEEEEcCC---------CeEEEEEEecCCC----------------C---CCCCChHHHHHHh----h--hChh
Q psy14496 255 YKTYGGGFLYHMEN---------NQISIGYIISLDY----------------K---NPYLSPFEEFQRY----K--THPK 300 (561)
Q Consensus 255 ~~~~g~~~~~~~~~---------~~~~ig~~~~~~~----------------~---~~~~~~~~~~~~~----~--~~p~ 300 (561)
+..+..+.||..+ ...++.+....+. . .+.....+.++.+ . -.|.
T Consensus 200 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (386)
T PRK07236 200 -GPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPV 278 (386)
T ss_pred -cCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHH
Confidence 1111223333321 1122222221110 0 0010111122222 1 2345
Q ss_pred HHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchh
Q psy14496 301 ICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLI 380 (561)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~ 380 (561)
+..+++....... ..+.. ...++|..+|++|+|||||.++|+.|||+|+||+||..||+.|.... .+....|.
T Consensus 279 ~~~~~~~~~~~~~--~~~~~---~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~--~~~~~al~ 351 (386)
T PRK07236 279 FAELVEATAQPFV--QAIFD---LEVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA--GDIDAALA 351 (386)
T ss_pred HHHHHhhCcCchh--hhhhc---ccCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc--cchHHHHH
Confidence 5665543322111 00111 12467888999999999999999999999999999999999997631 22323499
Q ss_pred hHHHHHhhc
Q psy14496 381 TYKTSFQAS 389 (561)
Q Consensus 381 ~y~~~~~~~ 389 (561)
.|++.|++.
T Consensus 352 ~Ye~~R~~r 360 (386)
T PRK07236 352 AWEAERLAV 360 (386)
T ss_pred HHHHHhhHH
Confidence 999999865
No 51
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.95 E-value=4.7e-26 Score=235.99 Aligned_cols=343 Identities=14% Similarity=0.142 Sum_probs=191.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC---ce-eecceeChhhHHhh--ccccccCCcccc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA---HI-LSGAIIDPRSIFEL--FPKEKLNKLFNT 93 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~---~~-~~G~~~~~~~l~~l--~~~~~~~~~~~~ 93 (561)
|+.+||+|||||||||++|+.|+++. ..|++|+||||...... .. ..+..+.+.++..+ ++.|.. ....
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~---~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--~~~~ 75 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLS---HGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQA--LADC 75 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcc---cCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhh--hHhh
Confidence 35699999999999999999998741 12999999999632211 11 12345566554332 222220 0000
Q ss_pred ccchhhhhhhcCCC--CcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEe
Q psy14496 94 PVIEERFLFLSSKK--SYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIAT 170 (561)
Q Consensus 94 ~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~ 170 (561)
......+.+..... ...+...... .....+.+.|..|.+.|.+.+.+ .|++++++++|+++..++++ +.|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~ 150 (395)
T PRK05732 76 ATPITHIHVSDRGHAGFVRLDAEDYG---VPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTL 150 (395)
T ss_pred cCCccEEEEecCCCCceEEeehhhcC---CCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEE
Confidence 00000111111100 0001000000 01125779999999999998876 58999999999999764332 33554
Q ss_pred cccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEec
Q psy14496 171 NNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIG 250 (561)
Q Consensus 171 ~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (561)
. +|.++++|+||+|||.+|.+++. +++.....+... ..+...+.... ...+.....+
T Consensus 151 ~---------------~g~~~~a~~vI~AdG~~S~vr~~----~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~- 207 (395)
T PRK05732 151 D---------------DGETLTGRLLVAADGSHSALREA----LGIDWQQHPYEQ-VAVIANVTTSE--AHQGRAFERF- 207 (395)
T ss_pred C---------------CCCEEEeCEEEEecCCChhhHHh----hCCCccceecCC-EEEEEEEEecC--CCCCEEEEee-
Confidence 2 34579999999999999998877 454432222111 11211121111 1122222221
Q ss_pred cCCCCCCCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecc-eeeccCCCccCC
Q psy14496 251 WPLDYKTYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGA-RTITTGGLQSLP 327 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 327 (561)
...+..+++|.+++...+.+....+... ...+..+..+.+... +...+. ....... ...+. .....+
T Consensus 208 -----~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~l-~~~~~~ 277 (395)
T PRK05732 208 -----TEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQA--FGWRLG--RITHAGKRSAYPL-ALVTAA 277 (395)
T ss_pred -----cCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HHhhhc--ceeecCCcceecc-cccchh
Confidence 1223356778887777665554321100 011122222222211 000010 1111000 00111 112245
Q ss_pred eeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC-Cc-cc-hhhHHHHHhhchhhHhhhhhhccchh
Q psy14496 328 EFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN-KF-NK-LITYKTSFQASWLYKELYKARNFKPA 404 (561)
Q Consensus 328 ~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~-~~-~~-l~~y~~~~~~~~~~~~~~~~~~~~~~ 404 (561)
.|..+|++|+|||||.++|+.|||+|+||+||..||+.|...+.... .. .. |+.|+++++.. ....+..++.+.++
T Consensus 278 ~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~-~~~~~~~~~~~~~~ 356 (395)
T PRK05732 278 QQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQD-REATIGFTDGLVRL 356 (395)
T ss_pred hhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999999999988765432 21 23 99999999865 45666777777776
Q ss_pred hh
Q psy14496 405 MK 406 (561)
Q Consensus 405 ~~ 406 (561)
+.
T Consensus 357 ~~ 358 (395)
T PRK05732 357 FA 358 (395)
T ss_pred Hc
Confidence 63
No 52
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.95 E-value=1.7e-25 Score=237.40 Aligned_cols=347 Identities=12% Similarity=0.081 Sum_probs=183.2
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC-CCc--eeecceeChhhHHhh--ccccccCCcccc
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL-GAH--ILSGAIIDPRSIFEL--FPKEKLNKLFNT 93 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~-g~~--~~~G~~~~~~~l~~l--~~~~~~~~~~~~ 93 (561)
+...++|+|||||||||++|+.|++. |++|+||||.+.. ... ...+..+.+++++.+ ++.+........
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~------Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~ 151 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK------GFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEA 151 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc------CCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhh
Confidence 45679999999999999999999999 9999999997631 110 111234666665533 211110000000
Q ss_pred -ccchhhhh-hhcC-CCC--cccCCCCCCceeec-CCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEE
Q psy14496 94 -PVIEERFL-FLSS-KKS--YKIPSWILPICFKN-HGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCG 167 (561)
Q Consensus 94 -~~~~~~~~-~~~~-~~~--~~~~~~~~p~~~~~-~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~ 167 (561)
......+. +.+. .+. ..++.. .+..... ...+.|+|..|.+.|.+.+.. ..++++++|+++..++ +. +.
T Consensus 152 g~~~~~~i~~~~d~~~G~~~~~~~~~-~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~-d~-Vt 226 (668)
T PLN02927 152 GCITGDRINGLVDGISGSWYVKFDTF-TPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSG-DK-VT 226 (668)
T ss_pred cCcccceeeeeeecCCCceEeecccc-ccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeC-CE-EE
Confidence 00000110 1111 111 011100 0100001 125689999999999876532 2467899999997653 32 23
Q ss_pred EEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEE
Q psy14496 168 IATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIH 247 (561)
Q Consensus 168 V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (561)
|.+ ++|.++++|+||+|||.+|.+|+.+. +.... ....+ ..+.......+.... .....
T Consensus 227 V~~---------------~dG~ti~aDlVVGADG~~S~vR~~l~---g~~~~-~~sG~-~~~rgi~~~~p~~~~-~~~~~ 285 (668)
T PLN02927 227 VVL---------------ENGQRYEGDLLVGADGIWSKVRNNLF---GRSEA-TYSGY-TCYTGIADFIPADIE-SVGYR 285 (668)
T ss_pred EEE---------------CCCCEEEcCEEEECCCCCcHHHHHhc---CCCCC-cccce-EEEEEEcCCCccccc-ccceE
Confidence 444 34668999999999999999988863 33221 11111 222222222111100 10011
Q ss_pred EeccCCCCCCCceEEEEEcCCCeEEEEEEecCCC---CCCCCChHHHHHHhhhC-hhHHHhhcCCeeeeecceeeccCCC
Q psy14496 248 TIGWPLDYKTYGGGFLYHMENNQISIGYIISLDY---KNPYLSPFEEFQRYKTH-PKICKILKGGKRISYGARTITTGGL 323 (561)
Q Consensus 248 ~~~~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~---~~~~~~~~~~~~~~~~~-p~~~~~l~~~~~~~~~~~~~~~~~~ 323 (561)
. | . +.......++.+++.+.+........ ..+.....+..+.|... +.+.++++....-....+.+.. .
T Consensus 286 ~--~-~--G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd--~ 358 (668)
T PLN02927 286 V--F-L--GHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYD--R 358 (668)
T ss_pred E--E-E--cCCeEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEe--c
Confidence 1 1 1 11111222344444443322211111 11111122223343322 5566665422110000111111 2
Q ss_pred ccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhc----C---CCccchhhHHHHHhhchhhHhhh
Q psy14496 324 QSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICS----N---NKFNKLITYKTSFQASWLYKELY 396 (561)
Q Consensus 324 ~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~----~---~~~~~l~~y~~~~~~~~~~~~~~ 396 (561)
...++|+.+|++|+|||||.|+|+.|||+++||+||..||+.|.+.+.. + +...+|+.|++.|+.+ +.+-+.
T Consensus 359 ~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~r-v~~i~~ 437 (668)
T PLN02927 359 SPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLR-VAIIHA 437 (668)
T ss_pred cCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHH-HHHHHH
Confidence 2345788899999999999999999999999999999999999876532 1 1212399999998875 444455
Q ss_pred hhhccchhh
Q psy14496 397 KARNFKPAM 405 (561)
Q Consensus 397 ~~~~~~~~~ 405 (561)
.++....++
T Consensus 438 ~ar~a~~~~ 446 (668)
T PLN02927 438 MARMAAIMA 446 (668)
T ss_pred HHHHHHHHH
Confidence 544444444
No 53
>PRK11445 putative oxidoreductase; Provisional
Probab=99.93 E-value=2.8e-24 Score=218.12 Aligned_cols=309 Identities=17% Similarity=0.234 Sum_probs=169.5
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCC---CceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG---AHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g---~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
+||+||||||||+++|+.|++. ++|+|+|+.+.++ ....+|+.+.+.++..+ ..+....+.........
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L-~~lgl~~~~~~~~~~~~ 73 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSF-AKDGLTLPKDVIANPQI 73 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCccccccccCcCcCccCHHHHHHH-HHcCCCCCcceeecccc
Confidence 7999999999999999999774 7999999987643 12236777888766543 22220000000000000
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+. . ..+.... .+.. ......+.++|.+|+++|.+.+ +.|+++++++.++++..++++ +.|.+.+ +|
T Consensus 74 ~~-~---~~~~~~~-~~~~-~~~~~~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~i~~~~~~--~~v~~~~-----~g 139 (351)
T PRK11445 74 FA-V---KTIDLAN-SLTR-NYQRSYINIDRHKFDLWLKSLI-PASVEVYHNSLCRKIWREDDG--YHVIFRA-----DG 139 (351)
T ss_pred ce-e---eEecccc-cchh-hcCCCcccccHHHHHHHHHHHH-hcCCEEEcCCEEEEEEEcCCE--EEEEEec-----CC
Confidence 00 0 0000000 0000 0011235699999999999854 678999999999999875443 3344311 11
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCCc
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYG 259 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 259 (561)
+ ..++++|+||+|||.+|.+|+++. .... ...+ .++...+..... .+... ..+.. ....+
T Consensus 140 ~-------~~~i~a~~vV~AdG~~S~vr~~l~----~~~~--~~~~-~~~~~~~~~~~~--~~~~~-~~f~~---~~~~~ 199 (351)
T PRK11445 140 W-------EQHITARYLVGADGANSMVRRHLY----PDHQ--IRKY-VAIQQWFAEKHP--VPFYS-CIFDN---EITDC 199 (351)
T ss_pred c-------EEEEEeCEEEECCCCCcHHhHHhc----CCCc--hhhE-EEEEEEecCCCC--CCCcc-eEEec---cCCCc
Confidence 1 126899999999999999988743 2211 1112 233332322211 11111 01110 12245
Q ss_pred eEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHh-hcCCeeeeecceeeccCCCccCCe--eecCCEEE
Q psy14496 260 GGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKI-LKGGKRISYGARTITTGGLQSLPE--FIFDGGAF 336 (561)
Q Consensus 260 ~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~l 336 (561)
+.|.+|.++ ...+|..... ....+.++.+.. .+... ...++.+......++.. ...+. ...+|+++
T Consensus 200 ~~W~~p~~~-~~~~g~~~~~------~~~~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vvl 268 (351)
T PRK11445 200 YSWSISKDG-YFIFGGAYPM------KDGRERFETLKE--KLSAFGFQFGKPVKTEACTVLRP--SRWQDFVCGKDNAFL 268 (351)
T ss_pred eEEEeCCCC-cEEecccccc------cchHHHHHHHHH--HHHhcccccccccccccccccCc--ccccccccCCCCEEE
Confidence 678888754 4555433211 112222222111 01110 01111111110011110 11122 23489999
Q ss_pred EecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhc
Q psy14496 337 IGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQAS 389 (561)
Q Consensus 337 vGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~ 389 (561)
||||||.++|++|+|+++|+.||..||+.|.+.. ...++.|++.++.-
T Consensus 269 VGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~-----~~~~~~y~~~~~~~ 316 (351)
T PRK11445 269 IGEAAGFISPSSLEGISYALDSARILSEVLNKQP-----EKLNTAYWRKTRKL 316 (351)
T ss_pred EEcccCccCCccCccHHHHHHhHHHHHHHHHhcc-----cchHHHHHHHHHHH
Confidence 9999999999999999999999999999997643 12388999888853
No 54
>KOG2614|consensus
Probab=99.92 E-value=1.3e-24 Score=210.61 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=38.9
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHh
Q psy14496 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKIC 371 (561)
Q Consensus 330 ~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~ 371 (561)
+..+++|+|||||.|.|+.|||+|.|++|+.+||+.|.++..
T Consensus 286 s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 286 SPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred CCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhcc
Confidence 346899999999999999999999999999999999999864
No 55
>PLN02697 lycopene epsilon cyclase
Probab=99.91 E-value=2e-22 Score=211.07 Aligned_cols=312 Identities=12% Similarity=0.116 Sum_probs=181.9
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...+||+|||||||||++|+.|++. |++|+|||+....... .|.. ...+.+ +.....+..... ..
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~------Gl~V~LIe~~~p~~~n--~GvW--~~~l~~----lgl~~~i~~~w~-~~ 170 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL------GLNVGLIGPDLPFTNN--YGVW--EDEFKD----LGLEDCIEHVWR-DT 170 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC------CCcEEEecCcccCCCc--cccc--hhHHHh----cCcHHHHHhhcC-Cc
Confidence 3469999999999999999999999 9999999986443221 1111 111111 110000000000 00
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
..+....... ........++|..|.+.|.+++.+.|+++ .+.+|+++..++++ +..+.+
T Consensus 171 ~v~~~~~~~~----------~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~--------- 229 (529)
T PLN02697 171 IVYLDDDKPI----------MIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVAC--------- 229 (529)
T ss_pred EEEecCCcee----------eccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEE---------
Confidence 0001000000 00111235999999999999998899998 67799998765333 222333
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCC--CCCCccccceeEEEEeeCCCccCCCcEEEEeccC---C-
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDN--KKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWP---L- 253 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~- 253 (561)
.+|.+++|++||+|||.+|. +. .+... ...+.....|+. +++....++++.. ..++|. +
T Consensus 230 ------~dG~~i~A~lVI~AdG~~S~--rl----~~~~~~~~~~~~Q~a~Gi~--ve~~~~~~d~~~~-vlMD~r~~~~~ 294 (529)
T PLN02697 230 ------EDGRVIPCRLATVASGAASG--RL----LQYEVGGPRVCVQTAYGVE--VEVENNPYDPSLM-VFMDYRDYFKE 294 (529)
T ss_pred ------cCCcEEECCEEEECCCcChh--hh----hccccCCCCcccEEEEEEE--EEecCCCCCcchh-eeecccccccc
Confidence 23568999999999999994 21 12111 111222334443 3333222333332 233332 1
Q ss_pred -----CCCCCceEEEEEcCCCeEEEEEEecCCCC-CCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCC
Q psy14496 254 -----DYKTYGGGFLYHMENNQISIGYIISLDYK-NPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLP 327 (561)
Q Consensus 254 -----~~~~~g~~~~~~~~~~~~~ig~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 327 (561)
..+.+...|++|.+++.+.|..+.-.+.. .+.....+.++.+..+.. +...+.++.....+|.++. ++
T Consensus 295 ~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~L~~~l~~~G----i~~~~i~~~E~g~iPm~g~--~~ 368 (529)
T PLN02697 295 KVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMG----IRILKTYEEEWSYIPVGGS--LP 368 (529)
T ss_pred ccccccCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHHHHHHHHhCC----CCcceEEEEEeeeecCCCC--Cc
Confidence 11133446677999999999544321111 111112223333322211 2234455555566777663 44
Q ss_pred eeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC---------Cccc-hhhHHHHHhhc
Q psy14496 328 EFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN---------KFNK-LITYKTSFQAS 389 (561)
Q Consensus 328 ~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~---------~~~~-l~~y~~~~~~~ 389 (561)
.. .++++++||||+.++|.+|.|+..++.+|..+|+.|++++..++ .+.. ++.|++.|...
T Consensus 369 ~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e 439 (529)
T PLN02697 369 NT-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQE 439 (529)
T ss_pred cc-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHH
Confidence 44 58999999999999999999999999999999999999997664 2233 78888877754
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.91 E-value=5.1e-22 Score=205.17 Aligned_cols=306 Identities=14% Similarity=0.138 Sum_probs=171.5
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh-hhh
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER-FLF 102 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~ 102 (561)
||+||||||||+++|+.|++. |++|+|||+.+..++....+ +....+.++ . +. ..... .... ..+
T Consensus 1 DviIiGaG~AGl~~A~~la~~------g~~v~liE~~~~~~~~~~~~--~~~~~~~~~-~-~~--~~~~~--~~~~~~~~ 66 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP------GLRVQLIEPHPPIPGNHTYG--VWDDDLSDL-G-LA--DCVEH--VWPDVYEY 66 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCCCcccc--ccHhhhhhh-c-hh--hHHhh--cCCCceEE
Confidence 899999999999999999999 99999999987654321111 111111110 0 00 00000 0000 000
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
........ . ......++|..|.+.|.+.+.+.|++++ ..+|+++..+ ++..+.|.+.
T Consensus 67 ~~~~~~~~-----~-----~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~----------- 123 (388)
T TIGR01790 67 RFPKQPRK-----L-----GTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCA----------- 123 (388)
T ss_pred ecCCcchh-----c-----CCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeC-----------
Confidence 00000000 0 1223469999999999999988899886 5578887654 2334455553
Q ss_pred cccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCC------
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYK------ 256 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------ 256 (561)
+|.+++|++||+|+|.+|.+++.. .+... ......|+. ++++...+..+.. ..+.|.....
T Consensus 124 ----~g~~~~a~~VI~A~G~~s~~~~~~---~~~~~---~~q~~~G~~--~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~ 190 (388)
T TIGR01790 124 ----GGQRIQARLVIDARGFGPLVQYVR---FPLNV---GFQVAYGVE--ARLSRPPHGPSSM-VIMDARVDQLAAPELK 190 (388)
T ss_pred ----CCCEEEeCEEEECCCCchhccccc---CCCCc---eEEEEEEEE--EEEcCCCCCCCce-EEEecccccccccccc
Confidence 245899999999999998553220 11110 111223332 3333222222322 2223321110
Q ss_pred CCc--eEEEEEcCCCeEEEEEEecCCCCCCCCChHH---HHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeec
Q psy14496 257 TYG--GGFLYHMENNQISIGYIISLDYKNPYLSPFE---EFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIF 331 (561)
Q Consensus 257 ~~g--~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (561)
..+ ..|++|.+++.+.++...... .+.....+ .+..+.... -+...+.+......+|..+. .+ +..
T Consensus 191 ~~~~~f~~~lP~~~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~----g~~~~~i~~~~~~~iP~~~~--~~-~~~ 261 (388)
T TIGR01790 191 GYRPTFLYAMPLGSTRVFIEETSLAD--RPALPRDRLRQRILARLNAQ----GWQIKTIEEEEWGALPVGLP--GP-FLP 261 (388)
T ss_pred CCCCceEEEeecCCCeEEEEeccccC--CCCCCHHHHHHHHHHHHHHc----CCeeeEEEeeeeEEEecccC--CC-ccC
Confidence 122 567789988888776443111 11222211 222221110 01112233333344555443 12 366
Q ss_pred CCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhc
Q psy14496 332 DGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQAS 389 (561)
Q Consensus 332 ~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~ 389 (561)
+|++++|||||.++|.+|+|++.|+.+|..+|+.|.+++..+. ...++.|+..++..
T Consensus 262 ~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~-~~~~~~~~~~~~~~ 318 (388)
T TIGR01790 262 QRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSS-ELATAAWDGLWPTE 318 (388)
T ss_pred CCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHhchHH
Confidence 8999999999999999999999999999999999999886442 12277887665543
No 57
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=99.91 E-value=2.1e-25 Score=169.05 Aligned_cols=80 Identities=29% Similarity=0.625 Sum_probs=71.2
Q ss_pred ccCCCCCCceEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCC-CCeeEECCC
Q psy14496 473 NHDEDQPIHLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPT-QNIEWITPE 551 (561)
Q Consensus 473 ~~~~~~~~h~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~-~~i~~~~p~ 551 (561)
.+.+.+++||.++|++.|..+. ..+|+.+|||++|++.++ .++.+++++|+|||||+++||. +.|+|+||+
T Consensus 18 ~~vDe~~pHI~v~~~~~~~~~~----~~~l~~aCPA~~Y~~~~~----g~l~~~yegClECGTCRvlc~~~~~i~W~YPr 89 (99)
T COG2440 18 YNVDEDHPHIIVKDPDDCQECE----DKPLIKACPAGCYKLIDD----GKLRFDYEGCLECGTCRVLCPHSGLIQWRYPR 89 (99)
T ss_pred eeccCCCCcEecCCchhhhhcc----chhhhhcCCHHHeeECCC----CcEEEeecCeeeccceeEecCCCcceEEecCC
Confidence 3444466999999999998866 679999999999999764 3799999999999999999999 999999999
Q ss_pred CCCCCCCCC
Q psy14496 552 GGSGTNYPN 560 (561)
Q Consensus 552 g~~g~~~~~ 560 (561)
||+||.||.
T Consensus 90 gg~GI~yrf 98 (99)
T COG2440 90 GGFGITYRY 98 (99)
T ss_pred CCcCEEEec
Confidence 999999985
No 58
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.91 E-value=2.5e-23 Score=230.05 Aligned_cols=324 Identities=13% Similarity=0.164 Sum_probs=172.5
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhhh
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFL 103 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (561)
+|+|||||||||++|+.|++. .||++|+|+||.+... ....|..+.+..+..+ ..+. ......... .+...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~----~~G~~V~vlEr~~~~~-~~G~Gi~ls~~~l~~L-~~~~--~~~~~~~~~-~~~~~ 72 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLL----DPAHEVTVVERNRPYD-TFGWGVVFSDATLGNL-RAAD--PVSAAAIGD-AFNHW 72 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHh----CCCCeEEEEecCCCCc-ccCcceEccHHHHHHH-HhcC--HHHHHHHHH-hcccC
Confidence 799999999999999999997 5589999999988642 2224555666665433 2221 000000000 00000
Q ss_pred cCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceec
Q psy14496 104 SSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKK 183 (561)
Q Consensus 104 ~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~ 183 (561)
+. ..+....... .........++|.+|.+.|.+++.+.|++++++++|+++..
T Consensus 73 ~~-~~~~~~g~~~--~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------------------ 125 (765)
T PRK08255 73 DD-IDVHFKGRRI--RSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA------------------------ 125 (765)
T ss_pred Cc-eEEEECCEEE--EECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------------------
Confidence 00 0000000000 00111234689999999999999999999999998866521
Q ss_pred ccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCCce--E
Q psy14496 184 NFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYGG--G 261 (561)
Q Consensus 184 ~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--~ 261 (561)
...++|+||+|||.+|.+|+++...++.........+. |--....+ ....... .+. ..+. .
T Consensus 126 -----~~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~------w~g~~~~~-~~~~~~~--~~~---~~g~~~~ 188 (765)
T PRK08255 126 -----LAADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFV------WLGTHKVF-DAFTFAF--EET---EHGWFQA 188 (765)
T ss_pred -----hhcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceE------EecCCCcc-cceeEEE--Eec---CCceEEE
Confidence 12578999999999999988765444432211111110 11110000 0000000 000 1111 2
Q ss_pred EEEEcCCCeEEEEEEecCC-CC---CCCCChHHHHHH----hhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCC
Q psy14496 262 FLYHMENNQISIGYIISLD-YK---NPYLSPFEEFQR----YKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDG 333 (561)
Q Consensus 262 ~~~~~~~~~~~ig~~~~~~-~~---~~~~~~~~~~~~----~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (561)
..||.+++...+-+....+ +. .+..+..+..+. |.......+++..........+.... ....++|+.++
T Consensus 189 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~~~--~~~~~~w~~gr 266 (765)
T PRK08255 189 HAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWINFP--RVVCERWVHWN 266 (765)
T ss_pred EEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeeecc--eeccCCCccCC
Confidence 2345443333222222111 10 011122222221 11110001111111000000001100 11246788888
Q ss_pred ----EEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14496 334 ----GAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 334 ----v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
++|+|||||.++|+.|||+++||+||..||+.|.... .+....|+.|++.|+.. +...++.++....++
T Consensus 267 ~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~--~~~~~al~~ye~~R~~r-~~~~~~~s~~~~~~~ 339 (765)
T PRK08255 267 RRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP--GDLPAALAAYEEERRVE-VLRIQNAARNSTEWF 339 (765)
T ss_pred CcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHHHH-HHHHHHHHHHhCcee
Confidence 9999999999999999999999999999999997641 13323499999999876 456666666655555
No 59
>PLN02463 lycopene beta cyclase
Probab=99.90 E-value=3.3e-21 Score=199.13 Aligned_cols=296 Identities=19% Similarity=0.197 Sum_probs=169.5
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...+||+|||||||||++|+.|++. |++|+|||+.+........|.. .+.+..+.....+...-. ..
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~------Gl~V~liE~~~~~~~p~~~g~w------~~~l~~lgl~~~l~~~w~-~~ 92 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEA------GLSVCCIDPSPLSIWPNNYGVW------VDEFEALGLLDCLDTTWP-GA 92 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHC------CCeEEEeccCccchhccccchH------HHHHHHCCcHHHHHhhCC-Cc
Confidence 3469999999999999999999999 9999999997643221101110 001111110000000000 00
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
..++....... . ......++|.+|.+.|.+++.+.|++++ ..+|+++..++++ +.|.+.
T Consensus 93 ~v~~~~~~~~~-----~-----~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~-------- 151 (447)
T PLN02463 93 VVYIDDGKKKD-----L-----DRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCD-------- 151 (447)
T ss_pred EEEEeCCCCcc-----c-----cCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEEC--------
Confidence 00011100000 0 1223468999999999999988999996 4689998875332 445553
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCC-ccccceeEEEEeeCCCccCCCcEEEEeccCCC----
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDP-QTYSLGIKELWTINPKLHKKGLVIHTIGWPLD---- 254 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---- 254 (561)
+|.+++||+||+|||.+|.+.+. ..+..+ .+...++. .++....++.+.. ..+.|...
T Consensus 152 -------dG~~i~A~lVI~AdG~~s~l~~~-------~~~~~~g~Q~a~Gi~--~ev~~~p~d~~~~-vlMD~r~~~~~~ 214 (447)
T PLN02463 152 -------DGVKIQASLVLDATGFSRCLVQY-------DKPFNPGYQVAYGIL--AEVDSHPFDLDKM-LFMDWRDSHLGN 214 (447)
T ss_pred -------CCCEEEcCEEEECcCCCcCccCC-------CCCCCccceeeeeEE--eecCCCCcccccc-hhhhcChhhccc
Confidence 35689999999999999986421 111111 11112222 2322222222211 12222111
Q ss_pred --------CCCCceEEEEEcCCCeEEEEEEecCCCCCCCCC---hHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCC
Q psy14496 255 --------YKTYGGGFLYHMENNQISIGYIISLDYKNPYLS---PFEEFQRYKTHPKICKILKGGKRISYGARTITTGGL 323 (561)
Q Consensus 255 --------~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 323 (561)
....+..|++|.+++.+.++.+.-... +... ..+.+.++..+.. ++..+..+.....+|.++.
T Consensus 215 ~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~--~~~~~~~lk~~L~~~l~~~G----i~~~~i~~~E~~~IPmg~~ 288 (447)
T PLN02463 215 NPELRARNSKLPTFLYAMPFSSNRIFLEETSLVAR--PGLPMDDIQERMVARLRHLG----IKVKSVEEDEKCVIPMGGP 288 (447)
T ss_pred cchhhhccCCCCceEEEEecCCCeEEEEeeeeecC--CCCCHHHHHHHHHHHHHHCC----CCcceeeeeeeeEeeCCCC
Confidence 011345677799999888876632211 1111 1222222221111 1222344444456777664
Q ss_pred ccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCC
Q psy14496 324 QSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNK 375 (561)
Q Consensus 324 ~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~ 375 (561)
.|. ..++++++||||+.++|.+|.|+..++..|..+|++|.++++.+..
T Consensus 289 --~~~-~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~ 337 (447)
T PLN02463 289 --LPV-IPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRS 337 (447)
T ss_pred --CCC-CCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 332 3579999999999999999999999999999999999999986554
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.89 E-value=2.1e-22 Score=209.43 Aligned_cols=222 Identities=15% Similarity=0.206 Sum_probs=128.9
Q ss_pred CcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14496 124 GNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 124 ~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
.+|+++|.+|++.|.+.|.+.||+++.++ |+++..+++|.+..|++.+ |.+++||++|+|+|.+
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~---------------g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDD---------------GRTIEADFFIDASGRR 210 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---------------SEEEEESEEEE-SGGG
T ss_pred eeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECC---------------CCEEEEeEEEECCCcc
Confidence 38999999999999999999999999885 8888877788888888854 5789999999999999
Q ss_pred chhhHHHHHHcCCCCCCCCccccceeEEEEeeCCC-ccCCCcEEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCCC
Q psy14496 204 GHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPK-LHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYK 282 (561)
Q Consensus 204 s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~ 282 (561)
|.+.++.++ .+... ....+..........+.. ...+.+..+. ...|+.|.+|..++..+ |++...++.
T Consensus 211 s~L~~~~L~-~~~~~--~~~~L~~d~av~~~~~~~~~~~~~T~~~a-------~~~GW~W~IPL~~~~~~-G~V~s~~~~ 279 (454)
T PF04820_consen 211 SLLARKALK-VGFRD--WSDWLPNDRAVAVQVPNEDPPEPYTRSTA-------FEAGWIWYIPLQNRRGS-GYVYSSDFI 279 (454)
T ss_dssp -CCCCCCT--EEEEE--ETTTCEEEEEEEEEEE-SSCTTSSEEEEE-------ESSEEEEEEEESSEEEE-EEEEETTTS
T ss_pred chhhHhhhc-CCCcc--ccccccccEEEEEecCcCCCCCCceeEEe-------cCCceEEEccCCCcceE-EEEeccccC
Confidence 987655210 01111 001110000011111111 1122222222 24567888999876665 888766543
Q ss_pred CCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHH
Q psy14496 283 NPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILV 362 (561)
Q Consensus 283 ~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~l 362 (561)
+..+.++.+..+......... ..+.+... . ..+...+|+++|||||++++|+.+.|+.+|+..+..+
T Consensus 280 ----s~~~A~~~l~~~l~~~~~~~~-~~i~~~~g------~--~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l 346 (454)
T PF04820_consen 280 ----SDDEAEAELLAYLGGSPEAEP-RHIRFRSG------R--RKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEAL 346 (454)
T ss_dssp ----HHHHHHHHHHHHHTCHCTTSC-EEEE-S-E------E--ESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHhcchhhhcch-hhhccccc------c--hhhcccCCEEEEcchhhccCccccccHHHHHHHHHHH
Confidence 233444444321110001111 22222111 1 3355568999999999999999999999999855555
Q ss_pred HHHHHHHHhcCCCccc-hhhHHHHHhhc
Q psy14496 363 ADSIFKKICSNNKFNK-LITYKTSFQAS 389 (561)
Q Consensus 363 A~~l~~~l~~~~~~~~-l~~y~~~~~~~ 389 (561)
++. +...+.... ++.|++.++..
T Consensus 347 ~~~----l~~~~~~~~~~~~Yn~~~~~~ 370 (454)
T PF04820_consen 347 AEA----LPDDDFSPAALDRYNRRMRRE 370 (454)
T ss_dssp HHT----HHCTTCCHHHHHHHHHHHHHH
T ss_pred HHh----cccCCCCHHHHHHHHHHHHHH
Confidence 544 443443343 88888877755
No 61
>KOG1298|consensus
Probab=99.84 E-value=4.6e-19 Score=168.83 Aligned_cols=304 Identities=18% Similarity=0.232 Sum_probs=176.0
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-c---CCcccc
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-L---NKLFNT 93 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~---~~~~~~ 93 (561)
+.+..+||+|||||.+|.++|+.|+|. |.+|.||||+-..-.++ -|..+.|.+...+.. +. . ...-..
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kd------GRrVhVIERDl~EPdRi-vGEllQPGG~~~L~~-LGl~Dcve~IDAQ 112 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKD------GRRVHVIERDLSEPDRI-VGELLQPGGYLALSK-LGLEDCVEGIDAQ 112 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhC------CcEEEEEecccccchHH-HHHhcCcchhHHHHH-hCHHHHhhcccce
Confidence 566789999999999999999999999 99999999985543333 466666665443311 11 0 000011
Q ss_pred ccchhhhhhhcCCCCcccC--CCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEe
Q psy14496 94 PVIEERFLFLSSKKSYKIP--SWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIAT 170 (561)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~ 170 (561)
.++ ++..+.++....++ ...++. +..+...+.++|.+.|.+.+.. .+|++..|+ |.++.++ ++.+.||+.
T Consensus 113 ~v~--Gy~ifk~gk~v~~pyP~~~f~~---d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee-~gvvkGV~y 185 (509)
T KOG1298|consen 113 RVT--GYAIFKDGKEVDLPYPLKNFPS---DPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEE-EGVVKGVTY 185 (509)
T ss_pred Eee--eeEEEeCCceeeccCCCcCCCC---CcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhc-cCeEEeEEE
Confidence 111 12222233333333 112221 2336678889999999998876 689987775 6677654 678899998
Q ss_pred cccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEec
Q psy14496 171 NNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIG 250 (561)
Q Consensus 171 ~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (561)
.+ ++|+. .+..|-+.|.|||..|.+||.+.++- ....+..+ +|+. -.......++.. |..
T Consensus 186 k~----k~gee-------~~~~ApLTvVCDGcfSnlRrsL~~~~---v~~V~S~f-VG~v---l~N~~l~~p~hg-hvI- 245 (509)
T KOG1298|consen 186 KN----KEGEE-------VEAFAPLTVVCDGCFSNLRRSLCDPK---VEEVPSYF-VGLV---LKNCRLPAPNHG-HVI- 245 (509)
T ss_pred ec----CCCce-------EEEecceEEEecchhHHHHHHhcCCc---ccccchhe-eeee---ecCCCCCCCCcc-eEE-
Confidence 65 33331 46789999999999999999965211 11112222 3322 111111112211 221
Q ss_pred cCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhh------hCh-hHH----HhhcCCeeeeecceeec
Q psy14496 251 WPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYK------THP-KIC----KILKGGKRISYGARTIT 319 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~------~~p-~~~----~~l~~~~~~~~~~~~~~ 319 (561)
+ +..--..+||.+.+.+.+.+.+......+..+ -++..|. .-| .++ +.++++.......+.+|
T Consensus 246 --L--~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~--gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mp 319 (509)
T KOG1298|consen 246 --L--SKPSPILVYQISSTEVRCLVDVPGQKLPSIAN--GEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMP 319 (509)
T ss_pred --e--cCCCcEEEEEecchheEEEEecCcccCCcccc--hhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCC
Confidence 1 11222347787777777766654432222222 1121111 111 223 23334432222111111
Q ss_pred cCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHH
Q psy14496 320 TGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFK 368 (561)
Q Consensus 320 ~~~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~ 368 (561)
.......|++++|||..+-||++|.||..|+.|..++-+.|.-
T Consensus 320 ------a~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~p 362 (509)
T KOG1298|consen 320 ------ATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKP 362 (509)
T ss_pred ------CCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhcc
Confidence 1122348999999999999999999999999999988877643
No 62
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=99.83 E-value=1.3e-21 Score=152.02 Aligned_cols=78 Identities=21% Similarity=0.468 Sum_probs=64.5
Q ss_pred ccCC-CCCCceEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCC-eeEECC
Q psy14496 473 NHDE-DQPIHLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQN-IEWITP 550 (561)
Q Consensus 473 ~~~~-~~~~h~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~-i~~~~p 550 (561)
+|.. ++.+||.|++.. .+|. .++|+.+||++||+.+++ ..+.+|+++|++||+|+++||..+ |+|+||
T Consensus 15 ~y~vd~~~~HI~i~~~~--~~~~----~k~C~~aCPagA~~~~e~----G~V~vd~e~CigCg~C~~~C~~~~~~~W~yP 84 (95)
T PRK15449 15 KFNVDEEHPHIVVKADA--DKQA----LELLVKACPAGLYKKQDD----GSVRFDYAGCLECGTCRILGLGSALEQWEYP 84 (95)
T ss_pred eeECCCCCCcEEEcCCC--Cchh----hhHHHHHCCHhhcEeCCC----CCEEEcCCCCCcchhhhhhcCCCCccCccCC
Confidence 5554 467999997653 2233 579999999999987533 379999999999999999998876 699999
Q ss_pred CCCCCCCCCC
Q psy14496 551 EGGSGTNYPN 560 (561)
Q Consensus 551 ~g~~g~~~~~ 560 (561)
+||+||.||.
T Consensus 85 rgg~GV~yr~ 94 (95)
T PRK15449 85 RGTFGVEFRY 94 (95)
T ss_pred CCCcCEEEec
Confidence 9999999985
No 63
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.81 E-value=3.7e-18 Score=173.54 Aligned_cols=281 Identities=16% Similarity=0.120 Sum_probs=151.9
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhhh
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFL 103 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (561)
||+|||||+|||++|+.|++. .||++|+|+|+.+..++....+ ... ..+.+....+. ...+. .......+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~----~~g~~V~lle~~~~~~~~~tw~-~~~-~~~~~~~~~~~-~~~v~--~~W~~~~v~ 71 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA----RPDFRIRVIEAGRTIGGNHTWS-FFD-SDLSDAQHAWL-ADLVQ--TDWPGYEVR 71 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCCCCCCcccce-ecc-cccchhhhhhh-hhhhe--EeCCCCEEE
Confidence 899999999999999999875 4599999999987654421100 000 00000000000 00000 000000000
Q ss_pred cCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceec
Q psy14496 104 SSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKK 183 (561)
Q Consensus 104 ~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~ 183 (561)
.+.....+ +.....|++.+|.+.|.+.+.. + ++.+.+|+++. +++ |.+.
T Consensus 72 ~~~~~~~l----------~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~--~~~----v~l~------------ 120 (370)
T TIGR01789 72 FPKYRRKL----------KTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGLD--ADG----VDLA------------ 120 (370)
T ss_pred Ccchhhhc----------CCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEEe--CCE----EEEC------------
Confidence 01000001 1224679999999999876643 3 67788998883 232 3332
Q ss_pred ccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcE-EEEeccCCCCCCCceEE
Q psy14496 184 NFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLV-IHTIGWPLDYKTYGGGF 262 (561)
Q Consensus 184 ~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~g~~~ 262 (561)
+|.+++|++||+|+|.+|.-... .+ .+...|+. ++...+ +.++.. ...+.|+- ..+..|
T Consensus 121 ---dg~~~~A~~VI~A~G~~s~~~~~----~~-------~Q~f~G~~--~r~~~p-~~~~~~~lMD~~~~q---~~g~~F 180 (370)
T TIGR01789 121 ---PGTRINARSVIDCRGFKPSAHLK----GG-------FQVFLGRE--MRLQEP-HGLENPIIMDATVDQ---LAGYRF 180 (370)
T ss_pred ---CCCEEEeeEEEECCCCCCCcccc----ce-------eeEEEEEE--EEEcCC-CCCCccEEEeeeccC---CCCceE
Confidence 35689999999999988752111 01 11224443 444433 444443 22233321 234556
Q ss_pred EE--EcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCcc-CCeee-cCCEEEEe
Q psy14496 263 LY--HMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQS-LPEFI-FDGGAFIG 338 (561)
Q Consensus 263 ~~--~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~lvG 338 (561)
+| |.+++.+.+..+.-.+. +..+....-+.+..+.. ..-+...+.+......+|...-.. ...|. .++++++|
T Consensus 181 ~Y~lP~~~~~~lvE~T~~s~~--~~l~~~~l~~~l~~~~~-~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG 257 (370)
T TIGR01789 181 VYVLPLGSHDLLIEDTYYADD--PLLDRNALSQRIDQYAR-ANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAG 257 (370)
T ss_pred EEECcCCCCeEEEEEEeccCC--CCCCHHHHHHHHHHHHH-HhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeee
Confidence 66 88999998876643321 22333222222221110 112222334333333555421000 11122 45699999
Q ss_pred cCCccCCCcccccchHHHHHHHHHHHHHH
Q psy14496 339 CNAGFMNVSRIKGIHTSIKSGILVADSIF 367 (561)
Q Consensus 339 DAa~~~~P~~g~G~~~Ai~~a~~lA~~l~ 367 (561)
||||.++|.+|+|++.|++++..+|+.+.
T Consensus 258 ~AAg~~~P~tGyg~~~a~~~a~~la~~~~ 286 (370)
T TIGR01789 258 LRAGLTHPTTGYSLPVAVENADALAAQPD 286 (370)
T ss_pred cccccccccccccHHHHHHHHHHHHhccC
Confidence 99999999999999999999998888763
No 64
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.79 E-value=3.2e-17 Score=167.53 Aligned_cols=281 Identities=15% Similarity=0.113 Sum_probs=158.0
Q ss_pred cEEEECchhHHHHHHHHH--HhccccCCCCCcEEEEcCCCCCCCce-eecceeCh--hhHHhhc-cccccCCccccccch
Q psy14496 24 DVIIVGGGPSGLSAAIRL--KQLAIKKNKEIKICVLEKGSELGAHI-LSGAIIDP--RSIFELF-PKEKLNKLFNTPVIE 97 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~L--a~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~~--~~l~~l~-~~~~~~~~~~~~~~~ 97 (561)
||+|||||||||++|+.| ++. |++|+|||+.+..+... ........ ..++.++ ..|.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~------g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~----------- 63 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP------GLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWS----------- 63 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC------CCEEEEEcCCccccccCCcccccccccccchHHHHheecC-----------
Confidence 899999999999999999 555 99999999987652110 01111000 0011110 1111
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccccccc
Q psy14496 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINK 177 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~ 177 (561)
...+....+..... ......|++.+|.+.|.+.+.+.| .++.+.+|+++..+++ .+.|.+.
T Consensus 64 -~~~v~~~~~~~~~~---------~~~Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~------ 124 (374)
T PF05834_consen 64 -GWRVYFPDGSRILI---------DYPYCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLA------ 124 (374)
T ss_pred -ceEEEeCCCceEEc---------ccceEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEEC------
Confidence 00111111111110 122458999999999999998444 5678899999987533 3345553
Q ss_pred CCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCC-
Q psy14496 178 EGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYK- 256 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~- 256 (561)
+|.+++|++||+|+|..+..... .+. + ...|+. ++...+.++++.. ..+.|..+..
T Consensus 125 ---------~g~~i~a~~VvDa~g~~~~~~~~----~~~------Q-~f~G~~--v~~~~~~f~~~~~-~lMD~r~~~~~ 181 (374)
T PF05834_consen 125 ---------DGRTIRARVVVDARGPSSPKARP----LGL------Q-HFYGWE--VETDEPVFDPDTA-TLMDFRVPQSA 181 (374)
T ss_pred ---------CCCEEEeeEEEECCCcccccccc----ccc------c-eeEEEE--EeccCCCCCCCce-EEEEecccCCC
Confidence 36689999999999966552111 111 1 224443 3344443444444 4455544322
Q ss_pred -CCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHH-hhcCCeeeeecceeeccCCCccCCeeecCCE
Q psy14496 257 -TYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICK-ILKGGKRISYGARTITTGGLQSLPEFIFDGG 334 (561)
Q Consensus 257 -~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 334 (561)
.....|+.|.+++++.|+.+.-... +.....+..+.+.. .++. -+...+.++.-...+|... ...++...+++
T Consensus 182 ~~~~F~Y~lP~~~~~alvE~T~fs~~--~~~~~~~~~~~l~~--~l~~~g~~~~~i~~~E~G~IPm~~-~~~~~~~~~~v 256 (374)
T PF05834_consen 182 DGPSFLYVLPFSEDRALVEETSFSPR--PALPEEELKARLRR--YLERLGIDDYEILEEERGVIPMTT-GGFPPRFGQRV 256 (374)
T ss_pred CCceEEEEEEcCCCeEEEEEEEEcCC--CCCCHHHHHHHHHH--HHHHcCCCceeEEEeecceeeccc-CCCccccCCCe
Confidence 2333455599999999987654332 11222222122211 1111 1222334443344556511 11234445789
Q ss_pred EEEecCCccCCCcccccchHHHHHHHHHHHHHHH
Q psy14496 335 AFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFK 368 (561)
Q Consensus 335 ~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~ 368 (561)
+.+|+|+|.++|.+|-++..+.+.+..+|+.+.+
T Consensus 257 ~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 257 IRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred eeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998877777777766666654
No 65
>KOG3855|consensus
Probab=99.76 E-value=5e-17 Score=156.86 Aligned_cols=334 Identities=18% Similarity=0.205 Sum_probs=174.4
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC--CCCCCceeec------ceeChhh--HHhhccccccCC
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG--SELGAHILSG------AIIDPRS--IFELFPKEKLNK 89 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~--~~~g~~~~~G------~~~~~~~--l~~l~~~~~~~~ 89 (561)
+..|||+||||||+|+++|-.|... +.....+|.|+|.. +..+.--.++ ..+++.. +-+.++.|....
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~sn--p~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~ 111 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSN--PPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIF 111 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccC--CccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhh
Confidence 3479999999999999999999744 22235799999988 3333211111 0122222 223334444100
Q ss_pred ccccccchhhhhhhcC--CCCcccCCCCCCceeecCCcEEeeHHHHHHHHHH-HHH--HCCCEEEcCceEeEEEE-----
Q psy14496 90 LFNTPVIEERFLFLSS--KKSYKIPSWILPICFKNHGNYIISLSDLVRWMGK-KAE--NMGIDIFSGFSASEILY----- 159 (561)
Q Consensus 90 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~-~a~--~~gv~i~~g~~v~~i~~----- 159 (561)
. .+......+...+. ...+.+....+.. .-++.+.-..+...|+. ++. ..+|++....++.++..
T Consensus 112 ~-~R~~~~~~~~v~Ds~s~a~I~~~~d~~~~----d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~ 186 (481)
T KOG3855|consen 112 H-DRYQKFSRMLVWDSCSAALILFDHDNVGI----DMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLI 186 (481)
T ss_pred h-hccccccceeeecccchhhhhhccccccc----cceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccC
Confidence 0 00000111111111 0111111000000 11566666666666663 332 25799999998877654
Q ss_pred -cCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCC-ccccceeEEEEeeCC
Q psy14496 160 -DSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDP-QTYSLGIKELWTINP 237 (561)
Q Consensus 160 -~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~-~~~~~~~~~~~~~~~ 237 (561)
++++-...+.+ ++|..+..|++|+|||.+|.+|+. .+++..... .. .++-....+..
T Consensus 187 ~~~n~~~~~i~l---------------~dg~~~~~~LLigAdg~Ns~vR~~----snid~~~~ny~~--havVAtl~l~~ 245 (481)
T KOG3855|consen 187 KNDNGMWFHITL---------------TDGINFATDLLIGADGFNSVVRKA----SNIDVASWNYDQ--HAVVATLKLEE 245 (481)
T ss_pred CCCCcceEEEEe---------------ccCceeeeceeeccccccchhhhh----cCCCcccccccc--eeeeEEEEecc
Confidence 22333333444 457899999999999999999877 566553211 11 22222233333
Q ss_pred CccCCCcEEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCC-----CCCCCChHHHHH-Hhh-hChh----------
Q psy14496 238 KLHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDY-----KNPYLSPFEEFQ-RYK-THPK---------- 300 (561)
Q Consensus 238 ~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~-----~~~~~~~~~~~~-~~~-~~p~---------- 300 (561)
+....+..+|.| + +.|..-+.|..++..++.+...... .-|.....+.+. .|. .++.
T Consensus 246 ~~~~~~~AwQRF---l---P~GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~a 319 (481)
T KOG3855|consen 246 EAILNGVAWQRF---L---PTGPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFA 319 (481)
T ss_pred cccccchhHHhc---C---CCCceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhh
Confidence 223344445543 1 2233335577666666665543210 001111111110 000 0000
Q ss_pred ---H----HHhhcCCe---eeeecce----------eeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHH
Q psy14496 301 ---I----CKILKGGK---RISYGAR----------TITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGI 360 (561)
Q Consensus 301 ---~----~~~l~~~~---~~~~~~~----------~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~ 360 (561)
. ..++...+ ...+.++ .+| .|+.....+..+|+.++|||||.++|+.|||+|+++.|..
T Consensus 320 l~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FP-Lgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~ 398 (481)
T KOG3855|consen 320 LNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFP-LGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVK 398 (481)
T ss_pred hcchhhccHHHHhccCcccccccCCeEEEecccceeecc-cccccHHHhcCCchhhhcchhhccccCcccccCCChhhHH
Confidence 0 11111110 0011111 122 2333344677799999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCc--cc-hhhHHHHHhh
Q psy14496 361 LVADSIFKKICSNNKF--NK-LITYKTSFQA 388 (561)
Q Consensus 361 ~lA~~l~~~l~~~~~~--~~-l~~y~~~~~~ 388 (561)
.|...+.++...+..- .. |+.|+.++..
T Consensus 399 ~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~ 429 (481)
T KOG3855|consen 399 ILVDSLSEAIVSGLDLGSVEHLEPYERERLQ 429 (481)
T ss_pred HHHHHHHHHHHhcccccchhhhhHHHHHHhh
Confidence 9999999888765432 22 7888866653
No 66
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.73 E-value=1e-16 Score=153.94 Aligned_cols=163 Identities=25% Similarity=0.352 Sum_probs=114.1
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccch
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIE 97 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~ 97 (561)
++.+++||+|||||||||++|+.|++. |++|+|+||...+|+.+..|+.+.+... +..
T Consensus 21 ~~~~~~DVvIVGgGpAGl~AA~~la~~------G~~V~liEk~~~~Ggg~~~gg~~~~~~~----------------v~~ 78 (257)
T PRK04176 21 LDYLEVDVAIVGAGPSGLTAAYYLAKA------GLKVAVFERKLSFGGGMWGGGMLFNKIV----------------VQE 78 (257)
T ss_pred HHhccCCEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCCCccccCcccccccc----------------chH
Confidence 466789999999999999999999999 9999999999988765544432211100 001
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccccccc
Q psy14496 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINK 177 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~ 177 (561)
....+++.. .++ ......+.+.+++..+...|.+.+.+.|++++.+++|+++..++++++.+|.+.+.....
T Consensus 79 ~~~~~l~~~---gv~-----~~~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~ 150 (257)
T PRK04176 79 EADEILDEF---GIR-----YKEVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEM 150 (257)
T ss_pred HHHHHHHHC---CCC-----ceeecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccc
Confidence 112222211 111 001123356788999999999999999999999999999987655588888875432222
Q ss_pred CCceecccccCeEEecCEEEEccCCCchhhHHHHHHc
Q psy14496 178 EGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKF 214 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~ 214 (561)
+|.. .+..+++|++||+|+|.+|.+.+.+.++.
T Consensus 151 ~g~~----~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 151 AGLH----VDPLTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred cCCC----CCcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 2211 12358999999999999999988887654
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.71 E-value=3.9e-16 Score=149.39 Aligned_cols=166 Identities=26% Similarity=0.364 Sum_probs=114.0
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccch
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIE 97 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~ 97 (561)
++..++||+|||||||||++|+.|++. |++|+|+||...+|+....|+.+.+. .. ...
T Consensus 17 ~~~~~~DVvIVGgGpAGL~aA~~la~~------G~~V~vlEk~~~~Ggg~~~gg~~~~~--------~~--------~~~ 74 (254)
T TIGR00292 17 LDYAESDVIIVGAGPSGLTAAYYLAKN------GLKVCVLERSLAFGGGSWGGGMLFSK--------IV--------VEK 74 (254)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCccccCCCcceec--------cc--------ccc
Confidence 345689999999999999999999999 99999999999887654433321111 00 000
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCC-CEEEEEecccccc
Q psy14496 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKN-NVCGIATNNFGIN 176 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g-~v~~V~~~~~~~~ 176 (561)
....++... .++ ......+.+..++..+.+.|.+.+.+.|+++++++.|.++..++++ ++.+|.+......
T Consensus 75 ~~~~~l~~~---gi~-----~~~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~ 146 (254)
T TIGR00292 75 PAHEILDEF---GIR-----YEDEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIE 146 (254)
T ss_pred hHHHHHHHC---CCC-----eeeccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCcccc
Confidence 111122210 111 1111123456688999999999999999999999999999876443 6889888654332
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCC
Q psy14496 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLD 217 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~ 217 (561)
.+|.. .+..+++|++||+|+|..|.+.+.+.+++++.
T Consensus 147 ~~g~~----~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~ 183 (254)
T TIGR00292 147 LAGLH----VDPLTQRSRVVVDATGHDAEIVAVCAKKIVLE 183 (254)
T ss_pred ccCCC----CCCEEEEcCEEEEeecCCchHHHHHHHHcCcc
Confidence 22211 12358999999999999999888877665543
No 68
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.69 E-value=6.3e-16 Score=137.19 Aligned_cols=160 Identities=24% Similarity=0.384 Sum_probs=116.4
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChh-hHHhhccccccCCccccccc
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPR-SIFELFPKEKLNKLFNTPVI 96 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~-~l~~l~~~~~~~~~~~~~~~ 96 (561)
.+..+.||+||||||+||+||+.|++. |++|+||||+-.+|+.+..|+.+-+. .+++-
T Consensus 26 ~~~~esDViIVGaGPsGLtAAyyLAk~------g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~--------------- 84 (262)
T COG1635 26 LDYLESDVIIVGAGPSGLTAAYYLAKA------GLKVAIFERKLSFGGGIWGGGMLFNKIVVREE--------------- 84 (262)
T ss_pred HhhhhccEEEECcCcchHHHHHHHHhC------CceEEEEEeecccCCcccccccccceeeecch---------------
Confidence 345679999999999999999999999 99999999999998877666543322 11110
Q ss_pred hhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14496 97 EERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
.-.++++ +-++......+-|+.+...+...|...+.+.|++|+.++.|+++...++.++.||.++.....
T Consensus 85 --a~~iL~e--------~gI~ye~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~ 154 (262)
T COG1635 85 --ADEILDE--------FGIRYEEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQ 154 (262)
T ss_pred --HHHHHHH--------hCCcceecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhh
Confidence 0111111 011111122446778888999999999999999999999999998875558999998876554
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHH
Q psy14496 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIK 212 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~ 212 (561)
..|.. -|.-++++++||+|+|.-..+...+.+
T Consensus 155 ~~~lh----vDPl~i~a~~VvDaTGHda~v~~~~~k 186 (262)
T COG1635 155 MAGLH----VDPLTIRAKAVVDATGHDAEVVSFLAK 186 (262)
T ss_pred hcccc----cCcceeeEEEEEeCCCCchHHHHHHHH
Confidence 44421 234589999999999988887666553
No 69
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.69 E-value=1.2e-16 Score=143.12 Aligned_cols=162 Identities=26% Similarity=0.390 Sum_probs=106.3
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchh
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEE 98 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 98 (561)
+..++||+|||||||||++|+.|++. |++|+|||+...+|+....|+.+-++ +- +.+.
T Consensus 14 ~~~~~DV~IVGaGpaGl~aA~~La~~------g~kV~v~E~~~~~GGg~~~Gg~lf~~--------iV--------Vq~~ 71 (230)
T PF01946_consen 14 DYLEYDVAIVGAGPAGLTAAYYLAKA------GLKVAVIERKLSPGGGMWGGGMLFNK--------IV--------VQEE 71 (230)
T ss_dssp HHTEESEEEE--SHHHHHHHHHHHHH------TS-EEEEESSSS-BTTTTS-CTT-----------EE--------EETT
T ss_pred hhccCCEEEECCChhHHHHHHHHHHC------CCeEEEEecCCCCCccccccccccch--------hh--------hhhh
Confidence 35679999999999999999999999 99999999999988766555432111 00 0000
Q ss_pred hhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccC
Q psy14496 99 RFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKE 178 (561)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~ 178 (561)
.-.++++ ..++..-...+.|+.+...+...|...+.+.|++|+..+.|+++...+++++.||.+++......
T Consensus 72 a~~iL~e--------lgi~y~~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~ 143 (230)
T PF01946_consen 72 ADEILDE--------LGIPYEEYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMA 143 (230)
T ss_dssp THHHHHH--------HT---EE-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT
T ss_pred HHHHHHh--------CCceeEEeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHh
Confidence 1111111 00111111234677889999999999999999999999999999877568999999887665555
Q ss_pred CceecccccCeEEecCEEEEccCCCchhhHHHHHHc
Q psy14496 179 GIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKF 214 (561)
Q Consensus 179 g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~ 214 (561)
|.+ -|.-++++++||+|+|..+.+.+.+.++.
T Consensus 144 glH----vDPl~i~ak~ViDaTGHda~v~~~~~kk~ 175 (230)
T PF01946_consen 144 GLH----VDPLTIRAKVVIDATGHDAEVVRVLAKKL 175 (230)
T ss_dssp --T-----B-EEEEESEEEE---SSSSSTSHHHHHH
T ss_pred hcC----CCcceEEEeEEEeCCCCchHHHHHHHHHh
Confidence 432 24468999999999999888766665554
No 70
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.68 E-value=1.1e-16 Score=172.45 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=48.7
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++.+.|..|..+.-|+.|..+||.+++....+ + ..+.+|+++|+.||.|..+||++||++.
T Consensus 501 ~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~--~-~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 561 (564)
T PRK12771 501 QEAARCLSCGNCFECDNCYGACPQDAIIKLGP--G-RRYHFDYDKCTGCHICADVCPCGAIEMG 561 (564)
T ss_pred hhcccCcccccccccchhhhhCChhheeeecC--C-ceEEEecccCcChhHHHhhcCcCceEec
Confidence 45677877643344789999999999876542 1 2478999999999999999999999983
No 71
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.67 E-value=2.1e-15 Score=166.12 Aligned_cols=41 Identities=29% Similarity=0.489 Sum_probs=37.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
....+|+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~------G~~VtV~Ek~~~~GG~ 577 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA------GHPVTVFEREENAGGV 577 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc------CCeEEEEecccccCcc
Confidence 3467999999999999999999999 9999999999887664
No 72
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.63 E-value=4.9e-15 Score=164.17 Aligned_cols=40 Identities=33% Similarity=0.482 Sum_probs=36.8
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~------G~~VTV~Ek~~~lGG~ 575 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA------GHPVTVFEKKEKPGGV 575 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC------CCeEEEEecccccCce
Confidence 458999999999999999999999 9999999999887764
No 73
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.56 E-value=2.9e-14 Score=138.89 Aligned_cols=155 Identities=24% Similarity=0.328 Sum_probs=107.4
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecc-e---eChhhHHhhccccc-----cCC
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGA-I---IDPRSIFELFPKEK-----LNK 89 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~-~---~~~~~l~~l~~~~~-----~~~ 89 (561)
++.+||+|||||||||+||+.++++ |.+|+|||+.+.+|.++. +|+ . .+....++++.... ...
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~------G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~s 74 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKA------GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKS 74 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhc------CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHH
Confidence 4679999999999999999999999 999999999999988764 442 2 23333444444333 122
Q ss_pred ccccccchhhhhhhcCCCCcc---cCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEE
Q psy14496 90 LFNTPVIEERFLFLSSKKSYK---IPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVC 166 (561)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~ 166 (561)
.+......+-+.|+...+.-. -....+|. ...-..+.+.|..++++.||+++.+++|.++..++ ...
T Consensus 75 al~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~--------sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f 144 (408)
T COG2081 75 ALARFTPEDFIDWVEGLGIALKEEDLGRMFPD--------SDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGF 144 (408)
T ss_pred HHHhCCHHHHHHHHHhcCCeeEEccCceecCC--------ccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceE
Confidence 333444555555555422111 11222332 13456889999999999999999999999998753 334
Q ss_pred EEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 167 GIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 167 ~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.|.+. +|.++++|.+|+|+|..|.
T Consensus 145 ~l~t~---------------~g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 145 RLDTS---------------SGETVKCDSLILATGGKSW 168 (408)
T ss_pred EEEcC---------------CCCEEEccEEEEecCCcCC
Confidence 55553 3558999999999997776
No 74
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.49 E-value=3.8e-12 Score=132.89 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=56.2
Q ss_pred cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14496 125 NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 125 ~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
...++...+.+.|.+.+.+.|++|+.+++|+++..+ ++.+++|.+. +.++++|.||.|+|.++
T Consensus 195 ~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~----------------~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 195 DETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTG----------------GGVITADAYVVALGSYS 257 (416)
T ss_pred cccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeC----------------CcEEeCCEEEECCCcch
Confidence 345677899999999999999999999999999765 4455566663 23789999999999887
Q ss_pred hhhHHHHHHcCCCC
Q psy14496 205 HLSKQIIKKFNLDN 218 (561)
Q Consensus 205 ~~~~~l~~~~g~~~ 218 (561)
. .+.+.++++.
T Consensus 258 ~---~l~~~~g~~~ 268 (416)
T PRK00711 258 T---ALLKPLGVDI 268 (416)
T ss_pred H---HHHHHhCCCc
Confidence 4 3444455543
No 75
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.49 E-value=8.8e-12 Score=127.19 Aligned_cols=75 Identities=25% Similarity=0.422 Sum_probs=58.3
Q ss_pred CCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14496 123 HGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 123 ~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
.....++..++.+.|.+.+++.|++++.+++|+++..+ ++.+.+|++.+ | +++||.||.|+|.
T Consensus 139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~---------------g-~i~ad~vV~a~G~ 201 (358)
T PF01266_consen 139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD---------------G-EIRADRVVLAAGA 201 (358)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETT---------------E-EEEECEEEE--GG
T ss_pred cccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccc---------------c-ccccceeEecccc
Confidence 44677899999999999999999999999999999886 66677788854 4 4999999999998
Q ss_pred CchhhHHHHHHcCCC
Q psy14496 203 RGHLSKQIIKKFNLD 217 (561)
Q Consensus 203 ~s~~~~~l~~~~g~~ 217 (561)
++. .+...++.+
T Consensus 202 ~s~---~l~~~~~~~ 213 (358)
T PF01266_consen 202 WSP---QLLPLLGLD 213 (358)
T ss_dssp GHH---HHHHTTTTS
T ss_pred cce---eeeeccccc
Confidence 764 344445543
No 76
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.46 E-value=4.3e-11 Score=124.45 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=50.6
Q ss_pred EEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 126 YIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++...+...|.+.+.+.|++++.+++|+++...+++.+++|++.+ | ++.++.||+|.|.++.
T Consensus 178 g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------------g-~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 178 GTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------------G-FIGAKKVGVAVAGHSS 241 (407)
T ss_pred CcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------------c-eEECCEEEECCChhhH
Confidence 45677788888999999999999999999999765456667777743 3 6899988787776664
No 77
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.42 E-value=1.2e-11 Score=122.23 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=43.6
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.|.++|.. |+.|.. ||-++++++ +.++|+..|-+||+|..+||.+||++.
T Consensus 558 vde~~C~g------C~~C~~-Cpf~ais~~-------ka~v~~~~C~gCG~C~~aCp~gai~~~ 607 (622)
T COG1148 558 VDEDKCTG------CGICAE-CPFGAISVD-------KAEVNPLRCKGCGICSAACPSGAIDLA 607 (622)
T ss_pred cchhhhcC------Ccceee-CCCCceecc-------ccccChhhhCcccchhhhCCcccchhc
Confidence 37788988 567999 999998875 278899999999999999999999874
No 78
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.41 E-value=4.9e-11 Score=124.21 Aligned_cols=67 Identities=9% Similarity=0.071 Sum_probs=48.6
Q ss_pred EeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 127 IISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 127 ~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.++...+.+.|.+.+.+.|++++++++|+++..+ ++. +.+.+.+.+ +. .+.++++|.||.|+|.++.
T Consensus 193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~-~~v~~~~~~----~~------~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGG-VVLTVQPSA----EH------PSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCE-EEEEEEcCC----CC------ccceEecCEEEECCCcChH
Confidence 4566788999999999999999999999999764 333 334432210 00 0136899999999999875
No 79
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.40 E-value=4.6e-13 Score=136.64 Aligned_cols=153 Identities=25% Similarity=0.363 Sum_probs=83.1
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ec-cee---C-hhhHHhhccccc-----cCCcc
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SG-AII---D-PRSIFELFPKEK-----LNKLF 91 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G-~~~---~-~~~l~~l~~~~~-----~~~~~ 91 (561)
|||+|||||||||+||+.|++. |.+|+||||.+.+|.++. +| +-. + .....++...+. ....+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~------g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK------GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT------T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHH
Confidence 7999999999999999999999 999999999999876643 23 111 1 111111111111 00111
Q ss_pred ccccchhhhhhhcCCCCcc-c--CCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEE
Q psy14496 92 NTPVIEERFLFLSSKKSYK-I--PSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGI 168 (561)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~--~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V 168 (561)
......+-+.|+.+.+-.. . ....+|. .-...++.+.|.+.+++.||+++++++|.++..+ ++.+..|
T Consensus 75 ~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~--------s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v 145 (409)
T PF03486_consen 75 KRFSPEDLIAFFEELGVPTKIEEDGRVFPK--------SDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGV 145 (409)
T ss_dssp HHS-HHHHHHHHHHTT--EEE-STTEEEET--------T--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEE
T ss_pred hcCCHHHHHHHHHhcCCeEEEcCCCEECCC--------CCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEe
Confidence 1222333444544422111 0 0111111 1235688899999999999999999999999875 4556677
Q ss_pred EecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 169 ATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 169 ~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++. ++.++.+|.||+|+|..|.
T Consensus 146 ~~~---------------~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 146 KTK---------------NGGEYEADAVILATGGKSY 167 (409)
T ss_dssp EET---------------TTEEEEESEEEE----SSS
T ss_pred ecc---------------CcccccCCEEEEecCCCCc
Confidence 772 2468999999999998764
No 80
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.40 E-value=2.5e-11 Score=127.91 Aligned_cols=165 Identities=20% Similarity=0.191 Sum_probs=97.4
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC-CCceeecceeCh-----hhH-------------
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL-GAHILSGAIIDP-----RSI------------- 78 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~-g~~~~~G~~~~~-----~~l------------- 78 (561)
..+.++||+|||||++|+++|++|++. .||.+|+|+|+.... |....+++.+.+ ..+
T Consensus 20 ~~~~~~DVvIIGgGi~Gls~A~~La~~----~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~ 95 (460)
T TIGR03329 20 VGDTQADVCIVGGGFTGLWTAIMIKQQ----RPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLV 95 (460)
T ss_pred CCCceeCEEEECCCHHHHHHHHHHHHh----CCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHH
Confidence 456779999999999999999999997 568999999997642 222333333210 000
Q ss_pred ----------HhhccccccCCccc------cccchhhh-------hhhcCCCC--cc-c---------CCCCCCceeecC
Q psy14496 79 ----------FELFPKEKLNKLFN------TPVIEERF-------LFLSSKKS--YK-I---------PSWILPICFKNH 123 (561)
Q Consensus 79 ----------~~l~~~~~~~~~~~------~~~~~~~~-------~~~~~~~~--~~-~---------~~~~~p~~~~~~ 123 (561)
.++..+......+. ...+...+ ..+...+. +. + +...........
T Consensus 96 ~~~~~~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~ 175 (460)
T TIGR03329 96 KASEQAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSP 175 (460)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeC
Confidence 01111110011111 01111111 11111110 00 0 000000112334
Q ss_pred CcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14496 124 GNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 124 ~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
....++..++.+.|.+.+.+.|++|+.+++|+++.. +..+.|.+.+ | +++||.||.|+|.+
T Consensus 176 ~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~~~v~t~~---------------g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 176 VAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQPAVVRTPD---------------G-QVTADKVVLALNAW 236 (460)
T ss_pred CCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCceEEEeCC---------------c-EEECCEEEEccccc
Confidence 456789999999999999999999999999999864 2234566632 3 69999999999988
Q ss_pred ch
Q psy14496 204 GH 205 (561)
Q Consensus 204 s~ 205 (561)
+.
T Consensus 237 s~ 238 (460)
T TIGR03329 237 MA 238 (460)
T ss_pred cc
Confidence 65
No 81
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.39 E-value=9.9e-11 Score=120.68 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=51.4
Q ss_pred CCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14496 123 HGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 123 ~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
.....++...+.+.|.+.+.+.|++++.+++|+++..+ ++. +.|.+.+ .++.+|.||+|+|.
T Consensus 137 ~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~-~~v~~~~----------------~~i~a~~vV~aaG~ 198 (380)
T TIGR01377 137 PNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELL-VTVKTTK----------------GSYQANKLVVTAGA 198 (380)
T ss_pred CCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCe-EEEEeCC----------------CEEEeCEEEEecCc
Confidence 34567889999999999999999999999999999764 333 3465532 37899999999998
Q ss_pred Cch
Q psy14496 203 RGH 205 (561)
Q Consensus 203 ~s~ 205 (561)
++.
T Consensus 199 ~~~ 201 (380)
T TIGR01377 199 WTS 201 (380)
T ss_pred chH
Confidence 754
No 82
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.39 E-value=1.9e-11 Score=134.41 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=50.1
Q ss_pred cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14496 125 NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 125 ~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
...++...+.+.|.+.+.+ |++++++++|+++..+ ++. +.|.+. +|..+++|.||+|+|.++
T Consensus 402 ~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~-~~v~t~---------------~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 402 GGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDG-WQLDFA---------------GGTLASAPVVVLANGHDA 463 (662)
T ss_pred CCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCE-EEEEEC---------------CCcEEECCEEEECCCCCc
Confidence 4457888999999999988 9999999999999765 333 336553 244678999999999987
Q ss_pred h
Q psy14496 205 H 205 (561)
Q Consensus 205 ~ 205 (561)
.
T Consensus 464 ~ 464 (662)
T PRK01747 464 A 464 (662)
T ss_pred c
Confidence 5
No 83
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.38 E-value=6.8e-11 Score=121.73 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=49.4
Q ss_pred EEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 126 YIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++..++...+.+.+.+.|++++.+++|+++..+ ++ .+.|.+.+ | ++++|.||.|+|.++.
T Consensus 144 g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~-~~~v~~~~---------------g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 144 GFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GD-GVTVTTAD---------------G-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred CEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CC-eEEEEeCC---------------C-EEEeeEEEEecCcchh
Confidence 35778889999999888899999999999999864 33 34566532 3 7899999999998765
No 84
>PLN02661 Putative thiazole synthesis
Probab=99.34 E-value=2.1e-11 Score=119.81 Aligned_cols=156 Identities=20% Similarity=0.293 Sum_probs=94.5
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecc-eeChhhHHhhccccccCCccccccch
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGA-IIDPRSIFELFPKEKLNKLFNTPVIE 97 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~-~~~~~~l~~l~~~~~~~~~~~~~~~~ 97 (561)
+..++||+|||||+|||++|+.|++. +|++|+|+||...+|+....|+ .++...++.
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~----------------- 146 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRK----------------- 146 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecCcccccceeeCccccccccccc-----------------
Confidence 45679999999999999999999964 2899999999988876433332 221110000
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEe--eHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14496 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYII--SLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i--~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
....++... ++.+. . .+.|.+ +-..+.+.|.+++.+ .|++++.++.++++..+ ++++.||.+.+..
T Consensus 147 ~a~e~LeEl-GV~fd-----~----~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~ 215 (357)
T PLN02661 147 PAHLFLDEL-GVPYD-----E----QENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWAL 215 (357)
T ss_pred HHHHHHHHc-CCCcc-----c----CCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecch
Confidence 001111110 00010 0 012222 334566778777655 79999999999999875 6788898865432
Q ss_pred cccCCceecccccCeEEecCEEEEccCCCchhhH
Q psy14496 175 INKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSK 208 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~ 208 (561)
...++... +-.+...++|+.||+|+|..+.+..
T Consensus 216 v~~~~~~~-s~~dp~~I~AkaVVlATGh~g~~ga 248 (357)
T PLN02661 216 VAQNHDTQ-SCMDPNVMEAKVVVSSCGHDGPFGA 248 (357)
T ss_pred hhhccCCC-CccceeEEECCEEEEcCCCCCcchh
Confidence 21111100 0001247899999999997765433
No 85
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.33 E-value=3.9e-11 Score=131.06 Aligned_cols=44 Identities=27% Similarity=0.478 Sum_probs=39.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeec
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSG 70 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G 70 (561)
...+|+|||||||||++|+.|++. |++|+|||+.+.+|+.+..|
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~g 235 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYG 235 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeec
Confidence 457999999999999999999999 99999999999887765444
No 86
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.32 E-value=8.7e-10 Score=118.22 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=55.1
Q ss_pred EEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 126 YIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++...|...+...+.+.|++++++++|+++..+ ++++++|++.+. .+|+ +.+++||.||.|+|.++.
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~---~~g~-------~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDH---LTGE-------TQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEc---CCCc-------EEEEECCEEEECCChhHH
Confidence 46889999999999999999999999999999875 567778876431 1111 247999999999998875
No 87
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.31 E-value=4.2e-10 Score=116.28 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=52.5
Q ss_pred cCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEcc
Q psy14496 122 NHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAE 200 (561)
Q Consensus 122 ~~~~~~i~r~~l~~~L~~~a~~~g-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~Ad 200 (561)
......++...+.+.|.+.+.+.| ..+..++.+..+..+ . ..+.|.+.+ | +++|+.||.|+
T Consensus 147 ~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~---------------g-~i~a~~vv~a~ 208 (387)
T COG0665 147 DPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG---------------G-TIEADKVVLAA 208 (387)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC---------------c-cEEeCEEEEcC
Confidence 344667888999999999999999 566668888888764 3 667788753 3 59999999999
Q ss_pred CCCch
Q psy14496 201 GSRGH 205 (561)
Q Consensus 201 G~~s~ 205 (561)
|.++.
T Consensus 209 G~~~~ 213 (387)
T COG0665 209 GAWAG 213 (387)
T ss_pred chHHH
Confidence 98866
No 88
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.31 E-value=5.9e-11 Score=119.96 Aligned_cols=176 Identities=20% Similarity=0.309 Sum_probs=107.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce--------eecceeChhhH------------H
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI--------LSGAIIDPRSI------------F 79 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~--------~~G~~~~~~~l------------~ 79 (561)
++++||+|||||+.|+++|+.|+++ .|+++|+|+||...++.+. ++|....|..+ .
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~----~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~ 76 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEY----EPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEF 76 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHh----CCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHH
Confidence 3679999999999999999999999 4559999999998876542 22321222211 1
Q ss_pred hhccccc----cCCccccccchhhhhhhcC-------CCCc-----------ccCCCCC---CceeecCCcEEeeHHHHH
Q psy14496 80 ELFPKEK----LNKLFNTPVIEERFLFLSS-------KKSY-----------KIPSWIL---PICFKNHGNYIISLSDLV 134 (561)
Q Consensus 80 ~l~~~~~----~~~~~~~~~~~~~~~~~~~-------~~~~-----------~~~~~~~---p~~~~~~~~~~i~r~~l~ 134 (561)
++..++. .-..+......+.+.++.. .+-. ....... -....-+....++...+.
T Consensus 77 ~~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t 156 (429)
T COG0579 77 AICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELT 156 (429)
T ss_pred HHHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHH
Confidence 1111111 0011111112222222211 0000 0000000 001122346778999999
Q ss_pred HHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeE-EecCEEEEccCCCchhhHHHHHH
Q psy14496 135 RWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGME-LYAKYTLFAEGSRGHLSKQIIKK 213 (561)
Q Consensus 135 ~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~-i~ad~vV~AdG~~s~~~~~l~~~ 213 (561)
..|.+.+++.|++++++++|+++...++| +.-+.+. +|.+ ++|++||.|.|..|. .+...
T Consensus 157 ~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~---------------~g~~~~~ak~Vin~AGl~Ad---~la~~ 217 (429)
T COG0579 157 RALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTS---------------NGEETLEAKFVINAAGLYAD---PLAQM 217 (429)
T ss_pred HHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEec---------------CCcEEEEeeEEEECCchhHH---HHHHH
Confidence 99999999999999999999999987665 3334442 2334 999999999998876 34444
Q ss_pred cCCCC
Q psy14496 214 FNLDN 218 (561)
Q Consensus 214 ~g~~~ 218 (561)
.|+..
T Consensus 218 ~g~~~ 222 (429)
T COG0579 218 AGIPE 222 (429)
T ss_pred hCCCc
Confidence 66665
No 89
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.30 E-value=2e-10 Score=118.76 Aligned_cols=163 Identities=21% Similarity=0.221 Sum_probs=96.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc--eeecceeC------hhhH-H-------hhccc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH--ILSGAIID------PRSI-F-------ELFPK 84 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~--~~~G~~~~------~~~l-~-------~l~~~ 84 (561)
|.+||+|||||++|+++|+.|+++ .||++|+|+||...++.. ..+++.+. +..+ . +++.+
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~----~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQER----YPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKA 76 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHh----CCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999997 678999999998654332 11222221 1111 0 11122
Q ss_pred cc--cCCcccc------ccchhhhhhh-------cCCCC-cc-cC----CCCCC-----ceeecCCcEEeeHHHHHHHHH
Q psy14496 85 EK--LNKLFNT------PVIEERFLFL-------SSKKS-YK-IP----SWILP-----ICFKNHGNYIISLSDLVRWMG 138 (561)
Q Consensus 85 ~~--~~~~~~~------~~~~~~~~~~-------~~~~~-~~-~~----~~~~p-----~~~~~~~~~~i~r~~l~~~L~ 138 (561)
+. .+..+.. ..+...+..+ ...+. .. +. ....| ..+.......++...+.+.|.
T Consensus 77 ~~~~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~ 156 (393)
T PRK11728 77 FCDQHGIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMA 156 (393)
T ss_pred HHHHcCCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHH
Confidence 11 1111110 0011111111 00000 00 00 00011 112223356788999999999
Q ss_pred HHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 139 KKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 139 ~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+.+.+.|++++++++|+++..+ ++. +.|.+.+ | ++++|.||.|+|.+|.
T Consensus 157 ~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~---------------g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 157 ELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQ---------------G-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECC---------------C-EEEeCEEEECCCcchH
Confidence 9999999999999999998764 333 3565532 3 7999999999999885
No 90
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.25 E-value=2.9e-12 Score=133.38 Aligned_cols=142 Identities=25% Similarity=0.364 Sum_probs=36.7
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeeccee--Chh-----hHHhhccccccCCccccccc
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAII--DPR-----SIFELFPKEKLNKLFNTPVI 96 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~--~~~-----~l~~l~~~~~~~~~~~~~~~ 96 (561)
|||||||||||++||+.+++. |.+|+|+||.+.+|+...+|... ... ....+..++.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~------G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~---------- 64 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA------GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFL---------- 64 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHH----------
T ss_pred CEEEECccHHHHHHHHHHHHC------CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHH----------
Confidence 899999999999999999999 99999999999999876554331 110 0011111110
Q ss_pred hhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14496 97 EERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
..+...+... .+........+.+++..+...|.+.+.+.|+++++++.|+++..+ ++++++|.+.++
T Consensus 65 ----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~--- 131 (428)
T PF12831_consen 65 ----NRLRARGGYP-----QEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETK--- 131 (428)
T ss_dssp ----HST-------------------------------------------------------------------------
T ss_pred ----HHHhhhcccc-----ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc---
Confidence 0000000000 000000000245666677778888888889999999999999875 678899988642
Q ss_pred cCCceecccccCeEEecCEEEEccCCC
Q psy14496 177 KEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
+| ..+++||++|+|+|.-
T Consensus 132 -~g--------~~~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 132 -SG--------RKEIRAKVFIDATGDG 149 (428)
T ss_dssp ---------------------------
T ss_pred -cc--------cccccccccccccccc
Confidence 23 2589999999999943
No 91
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.24 E-value=4.6e-10 Score=115.04 Aligned_cols=155 Identities=17% Similarity=0.232 Sum_probs=89.5
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC-CCceeecceeCh-----hhH-------Hhhccccc--c
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL-GAHILSGAIIDP-----RSI-------FELFPKEK--L 87 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~-g~~~~~G~~~~~-----~~l-------~~l~~~~~--~ 87 (561)
+||+|||||++|+++|+.|++. |++|+|||+.... |....+++.+.+ ..+ .+++..+. .
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~------G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 74 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR------GLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKA 74 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHc
Confidence 6999999999999999999999 9999999998642 222223332211 000 01111111 1
Q ss_pred CCccc------cccchhhhh-------hhcCCC-Ccc----------cCCCCCCc---eeecCCcEEeeHHHHHHHHHHH
Q psy14496 88 NKLFN------TPVIEERFL-------FLSSKK-SYK----------IPSWILPI---CFKNHGNYIISLSDLVRWMGKK 140 (561)
Q Consensus 88 ~~~~~------~~~~~~~~~-------~~~~~~-~~~----------~~~~~~p~---~~~~~~~~~i~r~~l~~~L~~~ 140 (561)
+..+. ...+..... .....+ ... .|....+. .........++...+.+.|.+.
T Consensus 75 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~ 154 (365)
T TIGR03364 75 GIWVRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAY 154 (365)
T ss_pred CCCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHH
Confidence 11110 001111110 000101 000 01000011 1222335678889999999998
Q ss_pred HHHC-CCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 141 AENM-GIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 141 a~~~-gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+.+. |++++.+++|+++.. + .|.+.+ | +++||.||.|+|.++.
T Consensus 155 ~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~---------------g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 155 LAEQHGVEFHWNTAVTSVET---G---TVRTSR---------------G-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHhcCCCEEEeCCeEEEEec---C---eEEeCC---------------C-cEEeCEEEECCCCChh
Confidence 8775 999999999999853 2 455532 2 5789999999998875
No 92
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.24 E-value=4.8e-11 Score=125.63 Aligned_cols=149 Identities=23% Similarity=0.337 Sum_probs=89.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC-CCCCceee---cceeChhhHHhhccccccCCcccccc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS-ELGAHILS---GAIIDPRSIFELFPKEKLNKLFNTPV 95 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~-~~g~~~~~---G~~~~~~~l~~l~~~~~~~~~~~~~~ 95 (561)
+..|||+||||||||+.||+.|++. |.+|+|+|+.. .+|...++ |+. ....+.+.+..+ +.......
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~------G~kV~LiE~~~d~iG~m~CnpsiGG~-akg~lvrEidal--Gg~~g~~~ 72 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARM------GAKTLLLTHNLDTIGQMSCNPAIGGI-AKGHLVREIDAL--GGEMGKAI 72 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHc------CCcEEEEecccccccccCCccccccc-hhhHHHHHHHhc--CCHHHHHH
Confidence 3569999999999999999999999 99999999884 44431110 111 111111111111 10000000
Q ss_pred chh--hhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEecc
Q psy14496 96 IEE--RFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNN 172 (561)
Q Consensus 96 ~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 172 (561)
+.. .+..+.... -|. .. .....+++..+.+.|.+.+.+. |++++ ...|+++..+ ++++.+|.+.+
T Consensus 73 d~~giq~r~ln~sk--------GpA-V~-s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e-~grV~GV~t~d 140 (618)
T PRK05192 73 DKTGIQFRMLNTSK--------GPA-VR-ALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVE-NGRVVGVVTQD 140 (618)
T ss_pred hhccCceeecccCC--------CCc-ee-CcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEec-CCEEEEEEECC
Confidence 000 011111100 010 00 0123578888899998888764 88985 5568888764 67788888843
Q ss_pred cccccCCceecccccCeEEecCEEEEccCCCc
Q psy14496 173 FGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 173 ~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
|..+.|+.||+|+|.++
T Consensus 141 ---------------G~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 141 ---------------GLEFRAKAVVLTTGTFL 157 (618)
T ss_pred ---------------CCEEECCEEEEeeCcch
Confidence 56899999999999765
No 93
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.23 E-value=9.7e-09 Score=109.31 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=50.4
Q ss_pred EeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 127 IISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 127 ~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.++..+|...|.+.+.+.|++++.+++|+++..+ ++ .++|.+.+. .+|+ ..+++++.||.|+|.++.
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~---~~g~-------~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDT---ATGK-------RYTVRARALVNAAGPWVK 217 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEc---CCCC-------EEEEEcCEEEECCCccHH
Confidence 4677888888988899999999999999999764 33 355665321 1121 147999999999998875
No 94
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.22 E-value=3.9e-11 Score=112.12 Aligned_cols=138 Identities=22% Similarity=0.353 Sum_probs=77.7
Q ss_pred EEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhhhc
Q psy14496 26 IIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFLS 104 (561)
Q Consensus 26 vIVGaGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (561)
+|||||||||++|+.|++. |++ |+|||+.+.+|+....- .....+... .... ....+ .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~------g~~~v~v~e~~~~~Gg~w~~~-----~~~~~~~~~----~~~~---~~~~~---~ 59 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER------GIDPVVVLERNDRPGGVWRRY-----YSYTRLHSP----SFFS---SDFGL---P 59 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT------T---EEEEESSSSSTTHHHCH------TTTT-BSS----SCCT---GGSS-----
T ss_pred CEECcCHHHHHHHHHHHhC------CCCcEEEEeCCCCCCCeeEEe-----CCCCccccC----cccc---ccccC---C
Confidence 7999999999999999999 999 99999999888754210 000000000 0000 00000 0
Q ss_pred CCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecc
Q psy14496 105 SKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKN 184 (561)
Q Consensus 105 ~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~ 184 (561)
+........ .|. . ........+.++.+.|.+.+++.+++++++++|+++..++++ +.|++.+
T Consensus 60 ~~~~~~~~~--~~~-~-~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~------------ 121 (203)
T PF13738_consen 60 DFESFSFDD--SPE-W-RWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRD------------ 121 (203)
T ss_dssp CCCHSCHHH--HHH-H-HHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETT------------
T ss_pred ccccccccc--CCC-C-CCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEe------------
Confidence 000000000 000 0 001222677889999999999999999999999999987444 6677743
Q ss_pred cccCeEEecCEEEEccCCCch
Q psy14496 185 FQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 185 f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+.+++||.||.|+|..|.
T Consensus 122 ---~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 122 ---GRTIRADRVVLATGHYSH 139 (203)
T ss_dssp ---S-EEEEEEEEE---SSCS
T ss_pred ---cceeeeeeEEEeeeccCC
Confidence 458999999999997655
No 95
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.20 E-value=1.2e-08 Score=110.93 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=55.3
Q ss_pred cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcC-CCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14496 125 NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDS-KNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 125 ~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~-~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
...++...|...|.+.+.+.|++++.+++|+++..++ ++.+++|.+.+. .+|+ ..++++|.||.|+|.+
T Consensus 226 Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg~-------~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 226 DGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTGK-------EFDVYAKVVVNAAGPF 295 (627)
T ss_pred CcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCCc-------EEEEEeCEEEECCCHh
Confidence 3457899999999999999999999999999998754 467777776331 1111 1268999999999988
Q ss_pred ch
Q psy14496 204 GH 205 (561)
Q Consensus 204 s~ 205 (561)
|.
T Consensus 296 s~ 297 (627)
T PLN02464 296 CD 297 (627)
T ss_pred HH
Confidence 76
No 96
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.20 E-value=1.5e-08 Score=107.88 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=52.0
Q ss_pred EEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 126 YIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++...|...|...+.+.|++++.+++|+++..+ +..++|.+.+. .|+ ..+++++.||.|+|.++.
T Consensus 150 g~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~--~~~~~v~~~~~----~g~-------~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 150 CWVDDARLVVLNALDAAERGATILTRTRCVSARRE--GGLWRVETRDA----DGE-------TRTVRARALVNAAGPWVT 216 (502)
T ss_pred eeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEc--CCEEEEEEEeC----CCC-------EEEEEecEEEECCCccHH
Confidence 35788999999999999999999999999999864 33456666431 121 146999999999998875
No 97
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.19 E-value=4.2e-10 Score=120.52 Aligned_cols=174 Identities=18% Similarity=0.159 Sum_probs=100.2
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-e-cceeC----hhhHHhhccccc-cCC-
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-S-GAIID----PRSIFELFPKEK-LNK- 89 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~-G~~~~----~~~l~~l~~~~~-~~~- 89 (561)
..++++||+|||+|+|||++|+.+++. |.+|+|+||....++... + |++.. ....+..+.+.. .+.
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~------G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g 85 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRA------GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAG 85 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHc------CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCC
Confidence 456789999999999999999999999 999999999987654321 1 22110 011111111111 000
Q ss_pred -----ccccc--cchhhhhhhcCCCCcccCCC----CCCceeecCC-cEEe------eHHHHHHHHHHHHHHCCCEEEcC
Q psy14496 90 -----LFNTP--VIEERFLFLSSKKSYKIPSW----ILPICFKNHG-NYII------SLSDLVRWMGKKAENMGIDIFSG 151 (561)
Q Consensus 90 -----~~~~~--~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~-~~~i------~r~~l~~~L~~~a~~~gv~i~~g 151 (561)
..... .....+.|+... ++.+... ........+. ...+ .-..+.+.|.+++++.||+++.+
T Consensus 86 ~~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~ 164 (541)
T PRK07804 86 LCDPDAVRSLVAEGPRAVRELVAL-GARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREH 164 (541)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 00000 112234444331 1111100 0000000000 0011 23468889999998889999999
Q ss_pred ceEeEEEEcCCCCEEEEEecccccccCCceecccccC-eEEecCEEEEccCCCchh
Q psy14496 152 FSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLG-MELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 152 ~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g-~~i~ad~vV~AdG~~s~~ 206 (561)
+.|+++..++++++.+|.+.+.....+ ++ ..+.|+.||+|+|..+.+
T Consensus 165 ~~v~~Li~~~~g~v~Gv~~~~~~~~~~--------~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 165 ALALDLLTDGTGAVAGVTLHVLGEGSP--------DGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred eEeeeeEEcCCCeEEEEEEEeccCCCC--------CcEEEEEcCeEEECCCCCCCC
Confidence 999999876557888887642110001 11 368999999999998864
No 98
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.19 E-value=1.1e-08 Score=105.90 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=56.9
Q ss_pred cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14496 125 NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 125 ~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
.+.++-.+|.-.++..|.+.|.+++..++|+++..+ ++ +++|++.|. .+|+. .+++|+.||.|+|.++
T Consensus 158 D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~---~tg~~-------~~ira~~VVNAaGpW~ 225 (532)
T COG0578 158 DGVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDR---ETGET-------YEIRARAVVNAAGPWV 225 (532)
T ss_pred cceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEec---CCCcE-------EEEEcCEEEECCCccH
Confidence 556788889888888999999999999999999875 45 999998763 33432 5799999999999887
Q ss_pred h
Q psy14496 205 H 205 (561)
Q Consensus 205 ~ 205 (561)
-
T Consensus 226 d 226 (532)
T COG0578 226 D 226 (532)
T ss_pred H
Confidence 5
No 99
>PRK07121 hypothetical protein; Validated
Probab=99.18 E-value=3.7e-10 Score=120.14 Aligned_cols=169 Identities=22% Similarity=0.266 Sum_probs=100.0
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeC----hh---------hHHhhcc
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIID----PR---------SIFELFP 83 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~----~~---------~l~~l~~ 83 (561)
..+.++||||||+|.|||++|+.+++. |.+|+||||.+..++.. .+|+.+. .+ ..+.++.
T Consensus 16 ~~~~~~DVvVVGaG~AGl~AA~~aae~------G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~ 89 (492)
T PRK07121 16 SWDDEADVVVVGFGAAGACAAIEAAAA------GARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYA 89 (492)
T ss_pred ccCCccCEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHH
Confidence 335689999999999999999999999 99999999998866543 2333221 00 0111111
Q ss_pred ccc-cCC-----c-ccc--ccchhhhhhhcCCCCcccCCCC------CCc-----eee-------------c-CCcEEe-
Q psy14496 84 KEK-LNK-----L-FNT--PVIEERFLFLSSKKSYKIPSWI------LPI-----CFK-------------N-HGNYII- 128 (561)
Q Consensus 84 ~~~-~~~-----~-~~~--~~~~~~~~~~~~~~~~~~~~~~------~p~-----~~~-------------~-~~~~~i- 128 (561)
.+. ... . ... ....+.+.|+...+ +.+.... .|. ... . ......
T Consensus 90 ~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~G-v~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 168 (492)
T PRK07121 90 YLRVAVGPGVDEEKLRRYCEGSVEHFDWLEGLG-VPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQ 168 (492)
T ss_pred HHHHHhCCCCCHHHHHHHHHccHHHHHHHHHcC-cEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecC
Confidence 111 000 0 000 01123334443211 1110000 000 000 0 000000
Q ss_pred ------eHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEec-CEEEEccC
Q psy14496 129 ------SLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYA-KYTLFAEG 201 (561)
Q Consensus 129 ------~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~a-d~vV~AdG 201 (561)
.-..+.+.|.+.+++.|++|+++++++++..++++++++|...+ +++ ...+++ +.||+|+|
T Consensus 169 ~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~-------~~~i~a~k~VVlAtG 236 (492)
T PRK07121 169 GPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGE-------TVAIRARKGVVLAAG 236 (492)
T ss_pred CCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCc-------EEEEEeCCEEEECCC
Confidence 23468888999999999999999999999876567899988732 221 136889 99999999
Q ss_pred CCch
Q psy14496 202 SRGH 205 (561)
Q Consensus 202 ~~s~ 205 (561)
..+.
T Consensus 237 g~~~ 240 (492)
T PRK07121 237 GFAM 240 (492)
T ss_pred CcCc
Confidence 8886
No 100
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.18 E-value=6.7e-10 Score=116.49 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=56.1
Q ss_pred EEeeHHHHHHHHHHHHHH----CC--CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEc
Q psy14496 126 YIISLSDLVRWMGKKAEN----MG--IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFA 199 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~----~g--v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~A 199 (561)
..++...+.+.|.+.+.+ .| ++++++++|+++..+ ++..+.|.+.+ | +++||.||.|
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~---------------G-~i~A~~VVva 268 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNR---------------G-EIRARFVVVS 268 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECC---------------C-EEEeCEEEEC
Confidence 578999999999999988 77 889999999999865 35566777742 3 7999999999
Q ss_pred cCCCchhhHHHHHHcCC
Q psy14496 200 EGSRGHLSKQIIKKFNL 216 (561)
Q Consensus 200 dG~~s~~~~~l~~~~g~ 216 (561)
.|.+|. .+.+.+|+
T Consensus 269 AG~~S~---~La~~~Gi 282 (497)
T PTZ00383 269 ACGYSL---LFAQKMGY 282 (497)
T ss_pred cChhHH---HHHHHhCC
Confidence 999886 23333565
No 101
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.18 E-value=3.5e-10 Score=118.80 Aligned_cols=165 Identities=22% Similarity=0.250 Sum_probs=98.1
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCC-CcEEEEcCCCCCCCce-eecceeC---hh---------hHHhhccccc-cC
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKE-IKICVLEKGSELGAHI-LSGAIID---PR---------SIFELFPKEK-LN 88 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G-~~V~ViEk~~~~g~~~-~~G~~~~---~~---------~l~~l~~~~~-~~ 88 (561)
||||||||+|||++|+.+++. | .+|+||||.+..++.. .+++.+. .. ..+..+..+. ..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~------G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 74 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA------GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGG 74 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence 899999999999999999999 9 9999999998876543 2333221 10 1111111111 00
Q ss_pred Cc------ccc--ccchhhhhhhcCCCCcccCC------CCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceE
Q psy14496 89 KL------FNT--PVIEERFLFLSSKKSYKIPS------WILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSA 154 (561)
Q Consensus 89 ~~------~~~--~~~~~~~~~~~~~~~~~~~~------~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v 154 (561)
.. ... ......+.|+...-.+..+. ...+...... .....-..+.+.|.+.+++.|++++++++|
T Consensus 75 ~~~~~~~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v 153 (439)
T TIGR01813 75 RGINDPELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPT-GGAGSGAEIVQKLYKKAKKEGIDTRLNSKV 153 (439)
T ss_pred CCCCCHHHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCC-CCCCCHHHHHHHHHHHHHHcCCEEEeCCEe
Confidence 00 000 01123345554111111110 0011100000 011233578899999999999999999999
Q ss_pred eEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 155 SEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 155 ~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+++..++++++++|.+.+ .+++. ..+.+|.||+|+|..+.-
T Consensus 154 ~~l~~~~~g~v~Gv~~~~----~~g~~-------~~~~a~~VVlAtGg~~~n 194 (439)
T TIGR01813 154 EDLIQDDQGTVVGVVVKG----KGKGI-------YIKAAKAVVLATGGFGSN 194 (439)
T ss_pred eEeEECCCCcEEEEEEEe----CCCeE-------EEEecceEEEecCCCCCC
Confidence 999987677888887642 11211 257899999999998874
No 102
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.17 E-value=1.5e-10 Score=115.66 Aligned_cols=144 Identities=22% Similarity=0.325 Sum_probs=86.2
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEE-cCCCCCCCceeeccee--ChhhHHhhccccccCCccccccchhhh
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVL-EKGSELGAHILSGAII--DPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~Vi-Ek~~~~g~~~~~G~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
||+|||||.||+.||+.+++. |.+|+|| ++....+...++..+- ....+.+.+..+ +..+....+...+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~------G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidal--gg~m~~~aD~~~i 72 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM------GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDAL--GGLMGRAADETGI 72 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHT--T-SHHHHHHHHEE
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEeecccccccccchhhhccccccchhHHHhhh--hhHHHHHHhHhhh
Confidence 899999999999999999999 9999999 4544444332222111 112222221111 1111111111111
Q ss_pred --hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEeccccccc
Q psy14496 101 --LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGINK 177 (561)
Q Consensus 101 --~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~ 177 (561)
..+....+ |.. ....++++|..+.+++.+.+++ .+++++ ...|+++..+ ++++.+|.+.+
T Consensus 73 ~~~~lN~skG--------pav--~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~----- 135 (392)
T PF01134_consen 73 HFRMLNRSKG--------PAV--HALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVE-NGKVKGVVTKD----- 135 (392)
T ss_dssp EEEEESTTS---------GGC--TEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEEC-TTEEEEEEETT-----
T ss_pred hhhcccccCC--------CCc--cchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEec-CCeEEEEEeCC-----
Confidence 11111110 110 0114589999999999999988 689986 5689999875 78999999954
Q ss_pred CCceecccccCeEEecCEEEEccCC
Q psy14496 178 EGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
|.++.+|.||+|+|.
T Consensus 136 ----------g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 136 ----------GEEIEADAVVLATGT 150 (392)
T ss_dssp ----------SEEEEECEEEE-TTT
T ss_pred ----------CCEEecCEEEEeccc
Confidence 678999999999998
No 103
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.17 E-value=1.7e-09 Score=102.19 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=87.7
Q ss_pred cCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCcc-CCCcEEEEeccCCCCCCCceEEEEEcCCCeE
Q psy14496 193 AKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLH-KKGLVIHTIGWPLDYKTYGGGFLYHMENNQI 271 (561)
Q Consensus 193 ad~vV~AdG~~s~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~ 271 (561)
|.++|+|||..|.+|+++. -..+...+.+ +|+. +.+... .++.- |.+ + +..+-..+|+.+.+.+
T Consensus 2 A~LtivaDG~~S~fRk~l~----~~~~~v~S~f-vGl~----l~~~~lp~~~~g-hvi---l--~~~~pil~YqI~~~et 66 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS----DNKPQVRSYF-VGLI----LKDAPLPKPNHG-HVI---L--GKPGPILLYQISSNET 66 (276)
T ss_pred CCEEEEecCCchHHHHhhc----CCCCceeeeE-EEEE----EcCCCCCCCCce-EEE---E--cCCCcEEEEEcCCCce
Confidence 7899999999999999853 1112222222 3432 111111 12211 222 1 2233456888877777
Q ss_pred EEEEEecCCCCCCCC---ChHHHHHHhh-------hChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEEecCC
Q psy14496 272 SIGYIISLDYKNPYL---SPFEEFQRYK-------THPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFIGCNA 341 (561)
Q Consensus 272 ~ig~~~~~~~~~~~~---~~~~~~~~~~-------~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa 341 (561)
++-+-+..+. -|.. +..+.+++.. -++.+.+.++.++. +.+|..-+. ......+|++++|||+
T Consensus 67 R~Lvdvp~~k-~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~ri-----rsMPn~~lp-~~~~~~~G~vllGDA~ 139 (276)
T PF08491_consen 67 RVLVDVPGPK-LPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRI-----RSMPNSFLP-ASPNWKPGVVLLGDAA 139 (276)
T ss_pred EEEEEeCCCc-cCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCc-----ceecccccC-CCCCCCCCEEEEehhh
Confidence 7766555441 1221 1222332211 11223334444422 233332221 2233448999999999
Q ss_pred ccCCCcccccchHHHHHHHHHHHHHHHH
Q psy14496 342 GFMNVSRIKGIHTSIKSGILVADSIFKK 369 (561)
Q Consensus 342 ~~~~P~~g~G~~~Ai~~a~~lA~~l~~~ 369 (561)
++.||++|+||+.|+.|+.++++.|...
T Consensus 140 nmrHPLTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 140 NMRHPLTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred cCcCCccccchhhHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999775
No 104
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.16 E-value=6.2e-10 Score=118.44 Aligned_cols=167 Identities=19% Similarity=0.210 Sum_probs=99.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-ee-cceeCh-hh----------HHhhccccc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LS-GAIIDP-RS----------IFELFPKEK 86 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~-G~~~~~-~~----------l~~l~~~~~ 86 (561)
+.++||||||+|+||+++|+.+++. |.+|+||||.+..|+.. .+ |.+... .. .++++.++.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~------Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~ 132 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDA------GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETL 132 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHC------CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHH
Confidence 4579999999999999999999999 99999999998877642 22 222110 00 111222211
Q ss_pred -cC-----Cc-ccc--ccchhhhhhhcCCCCcccCCCC------CCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcC
Q psy14496 87 -LN-----KL-FNT--PVIEERFLFLSSKKSYKIPSWI------LPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSG 151 (561)
Q Consensus 87 -~~-----~~-~~~--~~~~~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g 151 (561)
.. .. ... ....+.+.|+...+ +.+.... .+........ ...-..+.+.|.+.+++.|++++++
T Consensus 133 ~~~~~~~d~~l~~~~~~~s~~~i~wl~~~G-v~~~~~~~~~g~~~~r~~~p~~g-~~~g~~l~~~L~~~~~~~gv~i~~~ 210 (506)
T PRK06481 133 KGGGGTNDKALLRYFVDNSASAIDWLDSMG-IKLDNLTITGGMSEKRTHRPHDG-SAVGGYLVDGLLKNVQERKIPLFVN 210 (506)
T ss_pred HhcCCCCCHHHHHHHHhccHHHHHHHHHcC-ceEeecccCCCCCCCceeccCCC-CCChHHHHHHHHHHHHHcCCeEEeC
Confidence 00 00 000 01123445554321 1111000 0000000000 1122457888888898999999999
Q ss_pred ceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 152 FSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 152 ~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
++|+++..+ ++++++|.+.. .+|+ ..++.+|.||+|+|..+.-
T Consensus 211 t~v~~l~~~-~g~V~Gv~~~~----~~g~-------~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 211 ADVTKITEK-DGKVTGVKVKI----NGKE-------TKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred CeeEEEEec-CCEEEEEEEEe----CCCe-------EEEEecCeEEEeCCCcccC
Confidence 999999764 67788887632 1111 1368999999999988774
No 105
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.15 E-value=1.4e-09 Score=114.44 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=58.1
Q ss_pred CCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14496 123 HGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 123 ~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
+....++...+.+.|.+.+.+.|++++++++|+++..++++. +.|.+.+. .+|+ +.+++||+||.|.|.
T Consensus 170 p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~-v~v~~~~~---~~g~-------~~~i~A~~VV~AAG~ 238 (483)
T TIGR01320 170 AEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGS-WTVTVKNT---RTGG-------KRTLNTRFVFVGAGG 238 (483)
T ss_pred CCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCe-EEEEEeec---cCCc-------eEEEECCEEEECCCc
Confidence 446679999999999999999999999999999998753433 33443210 0111 236899999999998
Q ss_pred CchhhHHHHHHcCCC
Q psy14496 203 RGHLSKQIIKKFNLD 217 (561)
Q Consensus 203 ~s~~~~~l~~~~g~~ 217 (561)
+|. .+.+.+|+.
T Consensus 239 ~s~---~La~~~Gi~ 250 (483)
T TIGR01320 239 GAL---PLLQKSGIP 250 (483)
T ss_pred chH---HHHHHcCCC
Confidence 876 233346765
No 106
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=5e-10 Score=121.80 Aligned_cols=169 Identities=18% Similarity=0.212 Sum_probs=94.0
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC--ceee-cceeCh-------hhHHhhccccc-c
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA--HILS-GAIIDP-------RSIFELFPKEK-L 87 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~--~~~~-G~~~~~-------~~l~~l~~~~~-~ 87 (561)
+++++||+|||||.|||+||+.+++. |.+|+|+||...++. ...+ |++... ...+..+.+.. .
T Consensus 32 ~~~~~DVlVVG~G~AGl~AAi~Aae~------G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~ 105 (640)
T PRK07573 32 NKRKFDVIVVGTGLAGASAAATLGEL------GYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKG 105 (640)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc------CCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHh
Confidence 34679999999999999999999999 999999998766532 2222 222100 11111111111 0
Q ss_pred CCc------ccc--ccchhhhhhhcCCCCcccCC-------------CCCCceeecC--CcEEeeHHHHHHHHHHHHHHC
Q psy14496 88 NKL------FNT--PVIEERFLFLSSKKSYKIPS-------------WILPICFKNH--GNYIISLSDLVRWMGKKAENM 144 (561)
Q Consensus 88 ~~~------~~~--~~~~~~~~~~~~~~~~~~~~-------------~~~p~~~~~~--~~~~i~r~~l~~~L~~~a~~~ 144 (561)
+.. ... ......+.|+...+ +.+.. ...+...... .+..+. ..+.+.|.+.+++.
T Consensus 106 g~~~~d~~lv~~l~~~s~~~i~wL~~~G-V~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~-~~l~~~L~~~~~~~ 183 (640)
T PRK07573 106 GDFRAREANVYRLAEVSVNIIDQCVAQG-VPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLL-LGAYQALSRQIAAG 183 (640)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcC-CccccCCCCceeccccCCcccceeEeCCCCCchhHH-HHHHHHHHHHHHhc
Confidence 000 000 01123344444311 11110 0000000000 000010 12236666777788
Q ss_pred CCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 145 GIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 145 gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
||++++++.++++..+ +++++||.+.+. .+|.. ..+.|+.||+|+|..+.+
T Consensus 184 gV~i~~~t~v~~Li~d-~g~V~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 184 TVKMYTRTEMLDLVVV-DGRARGIVARNL---VTGEI-------ERHTADAVVLATGGYGNV 234 (640)
T ss_pred CCEEEeceEEEEEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCcccC
Confidence 9999999999999875 678999876431 12221 368999999999998763
No 107
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=4.9e-10 Score=120.60 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=97.9
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-e-ccee---C----h-hhHHhhccccc-c
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-S-GAII---D----P-RSIFELFPKEK-L 87 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~-G~~~---~----~-~~l~~l~~~~~-~ 87 (561)
+++++||||||||.|||+||+.+++. |.+|+|+||.+..++... + |++. . + ...+..+.+.. .
T Consensus 2 ~~~~~DVvVVG~G~AGl~AAl~Aae~------G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~ 75 (566)
T PRK06452 2 EKIEYDAVVIGGGLAGLMSAHEIASA------GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKG 75 (566)
T ss_pred CcccCcEEEECccHHHHHHHHHHHHC------CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHh
Confidence 45789999999999999999999999 999999999976555321 2 2211 0 0 11111111110 0
Q ss_pred CCc------ccc--ccchhhhhhhcCCCCcccCCCC---C-CceeecCC-cEEe-----eHHHHHHHHHHHHHHCCCEEE
Q psy14496 88 NKL------FNT--PVIEERFLFLSSKKSYKIPSWI---L-PICFKNHG-NYII-----SLSDLVRWMGKKAENMGIDIF 149 (561)
Q Consensus 88 ~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~---~-p~~~~~~~-~~~i-----~r~~l~~~L~~~a~~~gv~i~ 149 (561)
+.. ... ....+.+.|+... ++.+.... + ......+. .... .-..+.+.|.+.+.+.||+++
T Consensus 76 g~~~~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~ 154 (566)
T PRK06452 76 GDYLVDQDAAELLSNKSGEIVMLLERW-GALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFY 154 (566)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHC-CCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 000 000 0112334444331 11111000 0 00000000 0000 124577888888888899999
Q ss_pred cCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 150 SGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 150 ~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
.++.++++..+ +|+++||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 155 ~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 155 NEWFSLDLVTD-NKKVVGIVAMQM---KTLTP-------FFFKTKAVVLATGGMGML 200 (566)
T ss_pred eCcEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEeCeEEECCCccccc
Confidence 99999999875 788999876431 12221 368999999999988753
No 108
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.14 E-value=5.8e-10 Score=118.00 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=97.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC--CCCc-eeeccee--Ch---------hhHHhhccccc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE--LGAH-ILSGAII--DP---------RSIFELFPKEK 86 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~--~g~~-~~~G~~~--~~---------~~l~~l~~~~~ 86 (561)
.++||||||||+|||++|+.|++. |.+|+||||.+. .|+. ..++++. .. ...++++..+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~------G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREA------GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLL 76 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHH
Confidence 568999999999999999999999 999999999874 3443 2222211 00 00111222221
Q ss_pred -cCCc------ccc--ccchhhhhhhcCCCCcccCCCCCCceeecCCc--EEeeHHHHHHHHHHHHHHCCCEEEcCceEe
Q psy14496 87 -LNKL------FNT--PVIEERFLFLSSKKSYKIPSWILPICFKNHGN--YIISLSDLVRWMGKKAENMGIDIFSGFSAS 155 (561)
Q Consensus 87 -~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~ 155 (561)
.... ... ......+.|+...+ +.+.............. +.-.-..+.+.|.+.+++.|++++++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~s~~~~~wl~~~G-v~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~ 155 (466)
T PRK08274 77 RVTGGRTDEALARLLIRESSDCRDWMRKHG-VRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVT 155 (466)
T ss_pred HhhCCCCCHHHHHHHHHcCHHHHHHHHhCC-ceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 0000 000 01123344444321 11110000000000000 001135688889999999999999999999
Q ss_pred EEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhH
Q psy14496 156 EILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSK 208 (561)
Q Consensus 156 ~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~ 208 (561)
++..+ ++++++|.+.+ .+|+ ...++++.||+|+|..+.-+.
T Consensus 156 ~l~~~-~g~v~gv~~~~----~~g~-------~~~i~a~~VIlAtGg~~~n~~ 196 (466)
T PRK08274 156 ALELD-DGRFVGARAGS----AAGG-------AERIRAKAVVLAAGGFESNRE 196 (466)
T ss_pred EEEec-CCeEEEEEEEc----cCCc-------eEEEECCEEEECCCCCCCCHH
Confidence 99875 67888887631 1221 246899999999998776433
No 109
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.13 E-value=8.7e-10 Score=119.53 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=98.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-e-cce---eC---hhhHHhhccccc-cCC--
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-S-GAI---ID---PRSIFELFPKEK-LNK-- 89 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~-G~~---~~---~~~l~~l~~~~~-~~~-- 89 (561)
+++||||||+|+|||+||+.+++. |.+|+|+||....+++.. + |++ .. ....+..+.+.. .+.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~------G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~ 122 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEH------GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWL 122 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhc------CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCC
Confidence 568999999999999999999999 999999999987665421 1 211 11 111111111111 000
Q ss_pred ----cccc--ccchhhhhhhcCCCCcccCCC-C--C-CceeecCC--------cEE------eeHHHHHHHHHHHHHHCC
Q psy14496 90 ----LFNT--PVIEERFLFLSSKKSYKIPSW-I--L-PICFKNHG--------NYI------ISLSDLVRWMGKKAENMG 145 (561)
Q Consensus 90 ----~~~~--~~~~~~~~~~~~~~~~~~~~~-~--~-p~~~~~~~--------~~~------i~r~~l~~~L~~~a~~~g 145 (561)
.... ......+.|+...+ +.+... . + ......+. ... ..-..+.+.|.+.+.+.|
T Consensus 123 ~d~~lv~~l~~~s~~~i~~L~~~G-v~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~g 201 (635)
T PLN00128 123 GDQDAIQYMCREAPKAVIELENYG-LPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHN 201 (635)
T ss_pred CCHHHHHHHHHhHHHHHHHHHhCC-CccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCC
Confidence 0000 01123344443311 111100 0 0 00000000 001 123468889999898899
Q ss_pred CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 146 IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 146 v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
|+++.++.++++..++++++.||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 202 v~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 202 TQFFVEYFALDLIMDSDGACQGVIALNM---EDGTL-------HRFRAHSTILATGGYGRA 252 (635)
T ss_pred CEEEEeeEEEEEEEcCCCEEEEEEEEEc---CCCeE-------EEEEcCeEEECCCCCccc
Confidence 9999999999988765678899876321 12321 468999999999988753
No 110
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.13 E-value=8.6e-10 Score=119.58 Aligned_cols=170 Identities=20% Similarity=0.248 Sum_probs=99.2
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-ee-cce---eC---hhhHHhhccccc-cCC
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LS-GAI---ID---PRSIFELFPKEK-LNK 89 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~-G~~---~~---~~~l~~l~~~~~-~~~ 89 (561)
.++++||||||||.|||+||+.+++. |.+|+|+||....++.. .+ |++ +. ....+..+.+.. .+.
T Consensus 26 ~~~~~DVlVIG~G~AGl~AAi~Aa~~------G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~ 99 (617)
T PTZ00139 26 IDHTYDAVVVGAGGAGLRAALGLVEL------GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSD 99 (617)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc------CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhC
Confidence 44679999999999999999999999 99999999998766542 12 211 11 111111111110 000
Q ss_pred -----c-ccc--ccchhhhhhhcCCCCcccCCC----CCCceeecC--------CcEEe------eHHHHHHHHHHHHHH
Q psy14496 90 -----L-FNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNH--------GNYII------SLSDLVRWMGKKAEN 143 (561)
Q Consensus 90 -----~-~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~--------~~~~i------~r~~l~~~L~~~a~~ 143 (561)
. ... ....+.+.|+.+.+ +.+... ........+ ....+ .-..+.+.|.+.+++
T Consensus 100 ~~~d~~lv~~l~~~s~~~i~~L~~~G-v~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~ 178 (617)
T PTZ00139 100 WLGDQDAIQYMCREAPQAVLELESYG-LPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLK 178 (617)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcC-CceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHh
Confidence 0 000 11123344443311 111100 000000000 00111 124788999999989
Q ss_pred CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 144 MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 144 ~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.|++++.++.++++..++++++.||...+ .++|+. ..+.|+.||+|+|..+.
T Consensus 179 ~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 179 YDCNFFIEYFALDLIMDEDGECRGVIAMS---MEDGSI-------HRFRAHYTVIATGGYGR 230 (617)
T ss_pred CCCEEEeceEEEEEEECCCCEEEEEEEEE---CCCCeE-------EEEECCcEEEeCCCCcc
Confidence 99999999999999875578899987522 123321 46899999999998765
No 111
>PRK08275 putative oxidoreductase; Provisional
Probab=99.12 E-value=4.7e-10 Score=120.73 Aligned_cols=174 Identities=20% Similarity=0.304 Sum_probs=98.1
Q ss_pred CCCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ec-ceeC----h--hhHHhhccccc-c
Q psy14496 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SG-AIID----P--RSIFELFPKEK-L 87 (561)
Q Consensus 17 ~~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G-~~~~----~--~~l~~l~~~~~-~ 87 (561)
+.+++++||||||||.|||+||+.+++. .+|.+|+|+||.+..++... .+ ..+. + ...+..+.+.. .
T Consensus 4 ~~~~~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~ 79 (554)
T PRK08275 4 NTQEVETDILVIGGGTAGPMAAIKAKER----NPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIA 79 (554)
T ss_pred CceeEecCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHh
Confidence 3445789999999999999999999886 33689999999986433221 11 0110 0 11111111111 0
Q ss_pred CCc------cccc--cchhhhhhhcCCCCcccCC-----CCCCceeecCCcEEe---eHHHHHHHHHHHHHHCCCEEEcC
Q psy14496 88 NKL------FNTP--VIEERFLFLSSKKSYKIPS-----WILPICFKNHGNYII---SLSDLVRWMGKKAENMGIDIFSG 151 (561)
Q Consensus 88 ~~~------~~~~--~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~i---~r~~l~~~L~~~a~~~gv~i~~g 151 (561)
+.. +... ...+.+.|+...+ +.+.. ..... ....+.+.. .-..+.+.|.+.+.+.|++++.+
T Consensus 80 ~~~~~d~~~v~~~~~~s~~~i~~L~~~G-v~f~~~~~g~~~~~~-~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~ 157 (554)
T PRK08275 80 NDGIVDQKAVYAYAEHSFETIQQLDRWG-VKFEKDETGDYAVKK-VHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNR 157 (554)
T ss_pred cCCCccHHHHHHHHHhhHHHHHHHHHCC-CeeEeCCCCCEeeec-ccccCcccccCCChHHHHHHHHHHHHHCCCEEEcc
Confidence 000 0000 1123344443311 11110 00000 000011110 12367889999998899999999
Q ss_pred ceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 152 FSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 152 ~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+.++++..++++++.||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 158 ~~v~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 158 IMATRLLTDADGRVAGALGFDC---RTGEF-------LVIRAKAVILCCGAAGRL 202 (554)
T ss_pred eEEEEEEEcCCCeEEEEEEEec---CCCcE-------EEEECCEEEECCCCcccc
Confidence 9999998764678888875221 12221 368999999999988753
No 112
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=8.8e-10 Score=118.95 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=98.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-e-cce---eC---hhhHHhhccccc-cCCc-
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-S-GAI---ID---PRSIFELFPKEK-LNKL- 90 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~-G~~---~~---~~~l~~l~~~~~-~~~~- 90 (561)
.++||||||||.|||+||+.+++. |.+|+|+||....++... + |++ +. ....+..+.+.. .+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~ 79 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS------GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI 79 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc------CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999999 999999999976554321 1 221 11 111121221111 0000
Q ss_pred -----ccc--ccchhhhhhhcCCCCcccCCC----CCCceeecC----------C-cEEe--eHHHHHHHHHHHHHHCCC
Q psy14496 91 -----FNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNH----------G-NYII--SLSDLVRWMGKKAENMGI 146 (561)
Q Consensus 91 -----~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~----------~-~~~i--~r~~l~~~L~~~a~~~gv 146 (561)
... ......+.|+... ++.+... ........+ . .+.. .-..|...|.+++.+.|+
T Consensus 80 ~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi 158 (588)
T PRK08958 80 GDQDAIEYMCKTGPEAILELEHM-GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT 158 (588)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCC
Confidence 000 0112334444331 1111100 000000000 0 0000 124688889888888899
Q ss_pred EEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 147 DIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 147 ~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+++.++.++++..+++++++||..-+ ..+|+. ..+.|+.||+|+|..+.+
T Consensus 159 ~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 159 TIFSEWYALDLVKNQDGAVVGCTAIC---IETGEV-------VYFKARATVLATGGAGRI 208 (588)
T ss_pred EEEeCcEEEEEEECCCCEEEEEEEEE---cCCCcE-------EEEEcCeEEECCCCcccc
Confidence 99999999999876578899987632 122321 368899999999988763
No 113
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=6.1e-10 Score=120.36 Aligned_cols=172 Identities=22% Similarity=0.271 Sum_probs=97.5
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-e-cce---e---ChhhHHhhccccc-cC
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-S-GAI---I---DPRSIFELFPKEK-LN 88 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~-G~~---~---~~~~l~~l~~~~~-~~ 88 (561)
++++++||+|||||+|||+||+.+++. |.+|+||||....++... + |++ . .....+..+.+.. .+
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~------G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g 81 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARA------GLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGS 81 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHC------CCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhc
Confidence 345789999999999999999999999 999999999866554321 1 211 1 1111111111100 00
Q ss_pred C------ccccc--cchhhhhhhcCCCCcccCC----CCCCceeecC-------CcEE------eeHHHHHHHHHHHHHH
Q psy14496 89 K------LFNTP--VIEERFLFLSSKKSYKIPS----WILPICFKNH-------GNYI------ISLSDLVRWMGKKAEN 143 (561)
Q Consensus 89 ~------~~~~~--~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~-------~~~~------i~r~~l~~~L~~~a~~ 143 (561)
. ..... ...+.+.|+... ++.+.. .........+ .... ..-..|.+.|.+.+.+
T Consensus 82 ~~~~d~~~v~~~~~~a~~~i~~L~~~-Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~ 160 (591)
T PRK07057 82 DWLGDQDAIEFMCREAPNVVYELEHF-GMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVA 160 (591)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhc-CCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHh
Confidence 0 00000 011223333321 111100 0000000000 0000 0124688889998888
Q ss_pred CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 144 MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 144 ~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
.|++++.++.++++..++++++.||...+. .+|+. ..+.++.||+|+|..+.+
T Consensus 161 ~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 161 AKTQFFVEWMALDLIRDADGDVLGVTALEM---ETGDV-------YILEAKTTLFATGGAGRI 213 (591)
T ss_pred cCCEEEeCcEEEEEEEcCCCeEEEEEEEEc---CCCeE-------EEEECCeEEECCCCcccc
Confidence 999999999999998765678899876321 12221 368899999999988764
No 114
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.10 E-value=1.4e-09 Score=113.73 Aligned_cols=161 Identities=13% Similarity=0.190 Sum_probs=90.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
...+|+|||||||||++|..|++. |++|+|||+.+.+|+............+ .+.+. ....... ....+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~------G~~v~vfE~~~~vGG~W~~~~~~~~d~~-~~~~~---~~~~~s~-~Y~~L 77 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE------GHTVVVFEREKQVGGLWVYTPKSESDPL-SLDPT---RSIVHSS-VYESL 77 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc------CCeEEEEecCCCCcceeecCCCcCCCcc-ccCCC---Ccccchh-hhhhh
Confidence 468999999999999999999999 9999999999998875432110000000 00000 0000000 00000
Q ss_pred hhhcCCCCcccCCCCCCceeec---CCcEEeeHHHHHHHHHHHHHHCCCE--EEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14496 101 LFLSSKKSYKIPSWILPICFKN---HGNYIISLSDLVRWMGKKAENMGID--IFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~---~~~~~i~r~~l~~~L~~~a~~~gv~--i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
..-.+.....++.+.++..... .......+.++.+.|.+.++..|+. |+++++|+++... + ..+.|.+.+.
T Consensus 78 ~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~-~~w~V~~~~~-- 153 (461)
T PLN02172 78 RTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-D-GKWRVQSKNS-- 153 (461)
T ss_pred hccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-C-CeEEEEEEcC--
Confidence 0000000011111111111000 0111245678999999999998887 9999999999764 2 3466666321
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++. ..+..+|.||+|+|..+.
T Consensus 154 --~~~-------~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 154 --GGF-------SKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred --CCc-------eEEEEcCEEEEeccCCCC
Confidence 111 125689999999997653
No 115
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=99.10 E-value=2.5e-11 Score=87.29 Aligned_cols=57 Identities=25% Similarity=0.472 Sum_probs=36.8
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCC-CCeeE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPT-QNIEW 547 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~-~~i~~ 547 (561)
.+|+++|+. ++.|+.+||.++++..+..++ +.+.++++.|++||.|..+||+ +||++
T Consensus 2 ~Id~~~Ci~------Cg~C~~~Cp~~~~~~i~~~~~-~~~~v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 2 VIDEDKCIG------CGKCVRACPDGAIDAIEVDEG-KKVPVNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp EE-TTT----------SCCCHHCCCCS-S-ECCTTT-TSSECE-TT--S-SCCCCCSSSTTSEEE
T ss_pred EECcccccC------hhhHHhHcCccceeeEEecCC-eeEEeccccCcCcCcccccCCCccCCCC
Confidence 358899999 577999999987776544333 3567889999999999999996 99986
No 116
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=7e-10 Score=120.06 Aligned_cols=171 Identities=16% Similarity=0.184 Sum_probs=96.9
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-ee-ccee---C---hhhHHhhccccc-cC
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LS-GAII---D---PRSIFELFPKEK-LN 88 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~-G~~~---~---~~~l~~l~~~~~-~~ 88 (561)
....++||||||||+|||+||+.+++. |.+|+|+||....++.. .+ |++- . ....+..+.+.. .+
T Consensus 8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~------G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g 81 (598)
T PRK09078 8 IIDHKYDVVVVGAGGAGLRATLGMAEA------GLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGS 81 (598)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHc------CCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhc
Confidence 344679999999999999999999999 99999999987655432 11 2111 1 011111111100 00
Q ss_pred C------cccc--ccchhhhhhhcCCCCcccCCC----CCCceeecCC------------cEEe--eHHHHHHHHHHHHH
Q psy14496 89 K------LFNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNHG------------NYII--SLSDLVRWMGKKAE 142 (561)
Q Consensus 89 ~------~~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~------------~~~i--~r~~l~~~L~~~a~ 142 (561)
. .... ....+.+.|+... ++.+... ........+. .+.. .-..+.+.|.+.+.
T Consensus 82 ~~~~d~~lv~~l~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~ 160 (598)
T PRK09078 82 DWLGDQDAIEYMCREAPAAVYELEHY-GVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSL 160 (598)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHc-CCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHh
Confidence 0 0000 0111223343321 1111000 0000000000 0000 12368888999898
Q ss_pred HCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 143 NMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 143 ~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+.||+++.++.++++..+++++++||...+ .++|+. ..+.|+.||+|+|..+.
T Consensus 161 ~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 161 KHNAEFFIEYFALDLIMDDGGVCRGVVAWN---LDDGTL-------HRFRAHMVVLATGGYGR 213 (598)
T ss_pred hcCCEEEEeEEEEEEEEcCCCEEEEEEEEE---CCCCcE-------EEEEcCEEEECCCCCcc
Confidence 899999999999999876557899987522 122321 37899999999998875
No 117
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.09 E-value=4.3e-09 Score=110.86 Aligned_cols=81 Identities=14% Similarity=0.252 Sum_probs=57.4
Q ss_pred CCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccC
Q psy14496 123 HGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEG 201 (561)
Q Consensus 123 ~~~~~i~r~~l~~~L~~~a~~~g-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG 201 (561)
+....++...+.+.|.+.+++.| ++++++++|+++..++++. +.|.+.+. .+|+ +.+++|++||.|+|
T Consensus 175 p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~-~~v~~~~~---~~G~-------~~~i~A~~VVvaAG 243 (494)
T PRK05257 175 EIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGS-WTVTVKDL---KTGE-------KRTVRAKFVFIGAG 243 (494)
T ss_pred CCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCC-EEEEEEEc---CCCc-------eEEEEcCEEEECCC
Confidence 34678999999999999998876 8999999999998754553 33443210 0111 12689999999999
Q ss_pred CCchhhHHHHHHcCCC
Q psy14496 202 SRGHLSKQIIKKFNLD 217 (561)
Q Consensus 202 ~~s~~~~~l~~~~g~~ 217 (561)
.+|. .+.+.+|+.
T Consensus 244 g~s~---~L~~~~Gi~ 256 (494)
T PRK05257 244 GGAL---PLLQKSGIP 256 (494)
T ss_pred cchH---HHHHHcCCC
Confidence 8876 233346665
No 118
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.08 E-value=6.7e-10 Score=115.99 Aligned_cols=169 Identities=25% Similarity=0.346 Sum_probs=95.3
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-eccee---C-h--------hhHHhhccccc-cCC
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAII---D-P--------RSIFELFPKEK-LNK 89 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~---~-~--------~~l~~l~~~~~-~~~ 89 (561)
||||||+|+|||++|+.++++ |.+|+|+||.+..++... +++.+ . + ...+..+.++. ...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~------G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA------GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGG 74 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT------TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHhhh------cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccc
Confidence 899999999999999999999 999999999998665321 11111 0 0 11122222221 000
Q ss_pred -----ccc-c--ccchhhhhhhcCCCCcccCC----CCCCcee--ecCC------------cEEeeHHHHHHHHHHHHHH
Q psy14496 90 -----LFN-T--PVIEERFLFLSSKKSYKIPS----WILPICF--KNHG------------NYIISLSDLVRWMGKKAEN 143 (561)
Q Consensus 90 -----~~~-~--~~~~~~~~~~~~~~~~~~~~----~~~p~~~--~~~~------------~~~i~r~~l~~~L~~~a~~ 143 (561)
.+. . ....+.+.|+.+. .+.+.. ....... .... .....-..+.+.|.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 153 (417)
T PF00890_consen 75 GLNDPDLVRAFVENSPEAIDWLEEL-GVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEE 153 (417)
T ss_dssp T-S-HHHHHHHHHHHHHHHHHHHHT-T--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhcccceehhhhhh-cccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhh
Confidence 000 0 1112334444432 111111 0000000 0000 1112456789999999999
Q ss_pred CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch-hhHHH
Q psy14496 144 MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH-LSKQI 210 (561)
Q Consensus 144 ~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~-~~~~l 210 (561)
.|++|+++++++++..+ +++|++|...+. .+|+. .+++|+.||+|+|..+. +.+++
T Consensus 154 ~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~---~~g~~-------~~i~A~aVIlAtGG~~~~~~~~~ 210 (417)
T PF00890_consen 154 AGVDIRFNTRVTDLITE-DGRVTGVVAENP---ADGEF-------VRIKAKAVILATGGFGGELLRQY 210 (417)
T ss_dssp TTEEEEESEEEEEEEEE-TTEEEEEEEEET---TTCEE-------EEEEESEEEE----BGGHHHHHH
T ss_pred cCeeeeccceeeeEEEe-CCceeEEEEEEC---CCCeE-------EEEeeeEEEeccCcccccccccc
Confidence 99999999999999985 779999988521 23332 36899999999999986 43443
No 119
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=1.6e-09 Score=116.32 Aligned_cols=167 Identities=20% Similarity=0.227 Sum_probs=94.9
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC-CCCc-eeeccee----C-hhhHHhhccccc-cC-
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE-LGAH-ILSGAII----D-PRSIFELFPKEK-LN- 88 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~-~g~~-~~~G~~~----~-~~~l~~l~~~~~-~~- 88 (561)
.++.++||||||||.|||+||+.+ +. |.+|+|+||.+. .++. ..+++.+ . ....+..+.++. .+
T Consensus 3 ~~~~~~DVlVVG~G~AGl~AAi~A-~~------G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~ 75 (543)
T PRK06263 3 DEIMITDVLIIGSGGAGARAAIEA-ER------GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGA 75 (543)
T ss_pred cceeccCEEEECccHHHHHHHHHH-hc------CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhc
Confidence 346789999999999999999999 88 999999999864 3332 2222222 1 112222222111 00
Q ss_pred -----Cccccc--cchhhhhhhcCCCCcccCC-------------CCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEE
Q psy14496 89 -----KLFNTP--VIEERFLFLSSKKSYKIPS-------------WILPICFKNHGNYIISLSDLVRWMGKKAENMGIDI 148 (561)
Q Consensus 89 -----~~~~~~--~~~~~~~~~~~~~~~~~~~-------------~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i 148 (561)
...... .....+.|+...+ +.+.. ...+..... . -..-..+...|.+.+++.||++
T Consensus 76 ~~~d~~lv~~~~~~s~~~i~~L~~~G-v~f~~~~~g~~~~~~~~g~~~~r~~~~-~--~~~G~~i~~~L~~~~~~~gv~i 151 (543)
T PRK06263 76 YLNDPKLVEILVKEAPKRLKDLEKFG-ALFDRTEDGEIAQRPFGGQSFNRTCYA-G--DRTGHEMMMGLMEYLIKERIKI 151 (543)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcC-CcceeCCCCceeecccCCeEcCeEEEC-C--CCCHHHHHHHHHHHHhcCCCEE
Confidence 000000 1122334443211 11110 000000000 0 0012467788888888899999
Q ss_pred EcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 149 FSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 149 ~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++++.++++..+++++++||...+. .+|+. ..+.|+.||+|+|..+.
T Consensus 152 ~~~t~v~~Li~~~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 152 LEEVMAIKLIVDENREVIGAIFLDL---RNGEI-------FPIYAKATILATGGAGQ 198 (543)
T ss_pred EeCeEeeeeEEeCCcEEEEEEEEEC---CCCcE-------EEEEcCcEEECCCCCCC
Confidence 9999999998764445888765320 12221 36899999999998875
No 120
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.07 E-value=2.7e-08 Score=105.93 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhh
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLS 207 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~ 207 (561)
..+.+.|.+.+++.|++|+.+++|++|..+ ++++.+|++.+ |.++++|.||.|.|.+..+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~---------------g~~~~ad~vV~a~~~~~~~~ 289 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLAD---------------GEKIYAKRIVSNATRWDTFG 289 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCC---------------CCEEEcCEEEECCChHHHHH
Confidence 578888999999999999999999999875 57788888743 45799999999999876653
No 121
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=1.9e-09 Score=116.69 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=96.9
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCC---CcEEEEcCCCCCCCcee-e-cce---eCh---hhHHhhccccc
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKE---IKICVLEKGSELGAHIL-S-GAI---IDP---RSIFELFPKEK 86 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G---~~V~ViEk~~~~g~~~~-~-G~~---~~~---~~l~~l~~~~~ 86 (561)
|+++++||+|||||+|||+||+.+++. | .+|+|+||....++... + |++ +.+ ...+..+.+..
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~------G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~ 74 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAER------SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTV 74 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHh------CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHH
Confidence 467789999999999999999999999 8 89999999987665432 2 221 111 11111111110
Q ss_pred -cCCc------ccc--ccchhhhhhhcCCCCcccCCCC---C-CceeecCCc-EEe-----eHHHHHHHHHHHHHH-CCC
Q psy14496 87 -LNKL------FNT--PVIEERFLFLSSKKSYKIPSWI---L-PICFKNHGN-YII-----SLSDLVRWMGKKAEN-MGI 146 (561)
Q Consensus 87 -~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~---~-p~~~~~~~~-~~i-----~r~~l~~~L~~~a~~-~gv 146 (561)
.+.. ... ....+.+.|+... ++.+.... + ......+.. ... .-..+.+.|.+++.+ .||
T Consensus 75 ~~g~~~~d~~lv~~~~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv 153 (577)
T PRK06069 75 KGSDFLADQDAVEVFVREAPEEIRFLDHW-GVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNI 153 (577)
T ss_pred HhhcccCCHHHHHHHHHHHHHHHHHHHHc-CCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCC
Confidence 0000 000 0112334454432 11111000 0 000000000 000 123577888888866 699
Q ss_pred EEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 147 DIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 147 ~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+++.++.++++..+ ++++.||..-+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 154 ~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 154 HFYDEHFVTSLIVE-NGVFKGVTAIDL---KRGEF-------KVFQAKAGIIATGGAGRL 202 (577)
T ss_pred EEEECCEEEEEEEE-CCEEEEEEEEEc---CCCeE-------EEEECCcEEEcCchhccc
Confidence 99999999999865 677888765220 12211 368999999999988754
No 122
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.06 E-value=9.3e-10 Score=118.73 Aligned_cols=172 Identities=19% Similarity=0.217 Sum_probs=96.6
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeC----h-hhHHhhccccc-cCCc-
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIID----P-RSIFELFPKEK-LNKL- 90 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~----~-~~l~~l~~~~~-~~~~- 90 (561)
+++++||+|||||+|||+||+.+++. .+|.+|+|+||....++... +++.+. + ...+..+.+.. .+..
T Consensus 1 ~t~~~DVlVVG~G~AGl~AAi~Aa~~----g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~ 76 (582)
T PRK09231 1 QTFQADLAIIGAGGAGLRAAIAAAEA----NPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWL 76 (582)
T ss_pred CceeeeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccC
Confidence 36789999999999999999999987 23589999999977665432 222111 0 11111111111 0000
Q ss_pred -----ccc--ccchhhhhhhcCCCCcccCCCC---C-CceeecCC---cEEe---eHHHHHHHHHHHHHH-CCCEEEcCc
Q psy14496 91 -----FNT--PVIEERFLFLSSKKSYKIPSWI---L-PICFKNHG---NYII---SLSDLVRWMGKKAEN-MGIDIFSGF 152 (561)
Q Consensus 91 -----~~~--~~~~~~~~~~~~~~~~~~~~~~---~-p~~~~~~~---~~~i---~r~~l~~~L~~~a~~-~gv~i~~g~ 152 (561)
... ......+.|+... ++.+.... + ......+. .+.. .-..+.+.|.+.+.+ .+++++.++
T Consensus 77 ~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~ 155 (582)
T PRK09231 77 CEQDVVEYFVHHCPTEMTQLEQW-GCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEH 155 (582)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCe
Confidence 000 0112334444331 11111000 0 00000000 0111 123677888887766 489999999
Q ss_pred eEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 153 SASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 153 ~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
.++++..+ ++++.||..-+ ..+|+. ..+.|+.||+|+|..|.+
T Consensus 156 ~v~~Li~~-~g~v~Gv~~~~---~~~g~~-------~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 156 FVLDILVD-DGHVRGLVAMN---MMEGTL-------VQIRANAVVMATGGAGRV 198 (582)
T ss_pred EEEEEEEe-CCEEEEEEEEE---cCCCcE-------EEEECCEEEECCCCCcCC
Confidence 99999875 67888876521 012211 478999999999998875
No 123
>PRK12839 hypothetical protein; Provisional
Probab=99.06 E-value=2.5e-09 Score=114.91 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=51.1
Q ss_pred eHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 129 SLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 129 ~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
....|...|.+.+++.|++|+.++.++++..++++++++|...+ .+|+. ....++.||+|+|..+.-
T Consensus 212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~----~~g~~-------~i~aak~VVLAtGGf~~n 278 (572)
T PRK12839 212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG----PDGAV-------TVEATRGVVLATGGFPND 278 (572)
T ss_pred cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe----CCCcE-------EEEeCCEEEEcCCCcccC
Confidence 45567788999999999999999999999876678999997632 22221 133458999999988873
No 124
>KOG2820|consensus
Probab=99.06 E-value=1.9e-08 Score=95.73 Aligned_cols=165 Identities=26% Similarity=0.283 Sum_probs=101.2
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee-cc--eeChhh--------HHhhccccc-
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-GA--IIDPRS--------IFELFPKEK- 86 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~-G~--~~~~~~--------l~~l~~~~~- 86 (561)
+.+..||+|||||+-|+++|+.|++. |.++.++|+.+.+-.+..+ |. ++.+.- ..+.+..|.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~------g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~ 77 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKR------GDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRN 77 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhc------CCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHh
Confidence 45779999999999999999999999 9999999999876332111 11 111111 112233333
Q ss_pred ----cCCccccc------cch--hhhhhhc---CCC------------CcccC-CCCCCce---eecCCcEEeeHHHHHH
Q psy14496 87 ----LNKLFNTP------VIE--ERFLFLS---SKK------------SYKIP-SWILPIC---FKNHGNYIISLSDLVR 135 (561)
Q Consensus 87 ----~~~~~~~~------~~~--~~~~~~~---~~~------------~~~~~-~~~~p~~---~~~~~~~~i~r~~l~~ 135 (561)
.+..+... .+. .++.-+. ..+ ...+| ...+|.. ..+..+-.+...+-++
T Consensus 78 ~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk 157 (399)
T KOG2820|consen 78 LPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLK 157 (399)
T ss_pred ChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHH
Confidence 01100000 000 1110000 000 00122 1223332 1233355688889999
Q ss_pred HHHHHHHHCCCEEEcCceEeEEEE-cCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14496 136 WMGKKAENMGIDIFSGFSASEILY-DSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 136 ~L~~~a~~~gv~i~~g~~v~~i~~-~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
.|.+.+.+.|+.++.|.+|..+.. ++.+..+.|.|.+ |....|+-+|.+.|++-
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc---------------CCeeecceEEEEecHHH
Confidence 999999999999999999988864 3456677888854 56799999999999663
No 125
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.05 E-value=1.5e-09 Score=116.77 Aligned_cols=169 Identities=17% Similarity=0.276 Sum_probs=97.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeC-----hhhHHhhccccc-cCCcc--
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIID-----PRSIFELFPKEK-LNKLF-- 91 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~-----~~~l~~l~~~~~-~~~~~-- 91 (561)
.++||+|||||+|||+||+.+++. .+|.+|+|+||....++... +++.+. ....+..+.+.. .+..+
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~----g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d 77 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEA----NPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCE 77 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCc
Confidence 568999999999999999999886 33689999999987766432 222111 111122222111 01000
Q ss_pred ----cc--ccchhhhhhhcCCCCcccCCC----C-CCceeecCC---cEEe---eHHHHHHHHHHHHHH-CCCEEEcCce
Q psy14496 92 ----NT--PVIEERFLFLSSKKSYKIPSW----I-LPICFKNHG---NYII---SLSDLVRWMGKKAEN-MGIDIFSGFS 153 (561)
Q Consensus 92 ----~~--~~~~~~~~~~~~~~~~~~~~~----~-~p~~~~~~~---~~~i---~r~~l~~~L~~~a~~-~gv~i~~g~~ 153 (561)
.. ....+.+.|+... ++.+... . ... ...+. .+.. .-..+.+.|.+++.+ .+|+++.++.
T Consensus 78 ~~lv~~l~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~-~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~ 155 (580)
T TIGR01176 78 QDVVEYFVAEAPKEMVQLEHW-GCPWSRKPDGRVNVRR-FGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWF 155 (580)
T ss_pred HHHHHHHHHHhHHHHHHHHHc-CCccEecCCCceeeec-cCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeE
Confidence 00 1122334444331 1111100 0 000 00000 1111 224688889888876 5899999999
Q ss_pred EeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 154 ASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 154 v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
++++..+ ++++.||..-+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 156 v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 156 VTDLLVD-DGRVCGLVAIEM---AEGRL-------VTILADAVVLATGGAGRV 197 (580)
T ss_pred EEEEEee-CCEEEEEEEEEc---CCCcE-------EEEecCEEEEcCCCCccc
Confidence 9999875 678888865221 12221 468999999999998864
No 126
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.05 E-value=3e-09 Score=115.33 Aligned_cols=169 Identities=15% Similarity=0.168 Sum_probs=95.6
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecc--eeCh-----hhHHhhccccc-cCC
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGA--IIDP-----RSIFELFPKEK-LNK 89 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~--~~~~-----~~l~~l~~~~~-~~~ 89 (561)
..+.++||+|||||+|||+||+.+++. .||.+|+||||....++...+++ .++. ...+..+.... ...
T Consensus 7 ~~~~~~DVlVIG~G~AGl~AAi~Aae~----~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~ 82 (608)
T PRK06854 7 VVEVDTDILIIGGGMAGCGAAFEAKEW----APDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLM 82 (608)
T ss_pred cceeEeCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhcc
Confidence 345679999999999999999999885 34899999999876544322221 1111 01111111111 000
Q ss_pred c------ccc--ccchhhhhhhcCCCCcccC----CCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeE
Q psy14496 90 L------FNT--PVIEERFLFLSSKKSYKIP----SWILPICFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASE 156 (561)
Q Consensus 90 ~------~~~--~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~g-v~i~~g~~v~~ 156 (561)
. ... ....+.+.|+...+ +.+. ....+. ......+....+.+.|.+.+++.+ |+++.++.|++
T Consensus 83 ~~~d~~lv~~~~~~s~~~i~~L~~~G-v~f~~~~~G~~~~~---g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~ 158 (608)
T PRK06854 83 GIVREDLVYDIARHVDSVVHLFEEWG-LPIWKDENGKYVRR---GRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITD 158 (608)
T ss_pred CCCCHHHHHHHHHhHHHHHHHHHHcC-CeeeecCCCCcccc---CCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEE
Confidence 0 000 00123334443311 1111 000000 000111344578888888887765 99999999999
Q ss_pred EEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 157 ILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 157 i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+..+ +++++||..-+. .+|+ ...+.|+.||+|+|..+.
T Consensus 159 Li~~-~g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 159 LLVD-DNRIAGAVGFSV---RENK-------FYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEe-CCEEEEEEEEEc---cCCc-------EEEEECCEEEECCCchhh
Confidence 9865 567888754210 1121 136899999999998764
No 127
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=1.1e-09 Score=118.24 Aligned_cols=170 Identities=21% Similarity=0.329 Sum_probs=94.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee--ecce---eC---h-hhHHhhccccc-cCCc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL--SGAI---ID---P-RSIFELFPKEK-LNKL 90 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~--~G~~---~~---~-~~l~~l~~~~~-~~~~ 90 (561)
.++||+|||||+|||+||+.+++. .+|.+|+|+||....++... .|++ .. + ...+..+.+.. .+..
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~ 77 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRL----DPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDY 77 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHh----cCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999987 23589999999987654321 2221 10 0 11111111000 0000
Q ss_pred ------ccc--ccchhhhhhhcCCCCcccCCCC----CCceeecC----CcEEe--eHHHHHHHHHHHHHHCCCEEEcCc
Q psy14496 91 ------FNT--PVIEERFLFLSSKKSYKIPSWI----LPICFKNH----GNYII--SLSDLVRWMGKKAENMGIDIFSGF 152 (561)
Q Consensus 91 ------~~~--~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~----~~~~i--~r~~l~~~L~~~a~~~gv~i~~g~ 152 (561)
... ......+.|+... ++.++... .......+ ..+.. .-..+.+.|.+.+.+.||+++.++
T Consensus 78 l~d~~~v~~l~~~a~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t 156 (575)
T PRK05945 78 LADQDAVAILTQEAPDVIIDLEHL-GVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEW 156 (575)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCc
Confidence 000 0112233444321 11111000 00000000 01111 124688889998888999999999
Q ss_pred eEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 153 SASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 153 ~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
.|+++..+ ++++.||..-+. .+|+ ...+.|+.||+|+|..+.+
T Consensus 157 ~v~~L~~~-~g~v~Gv~~~~~---~~g~-------~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 157 YVMRLILE-DNQAKGVVMYHI---ADGR-------LEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EEEEEEEE-CCEEEEEEEEEc---CCCe-------EEEEECCEEEECCCCCcCC
Confidence 99999864 678888764210 1221 1368999999999998763
No 128
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.05 E-value=3.5e-09 Score=113.48 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEec-CEEEEccCCCchh
Q psy14496 132 DLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYA-KYTLFAEGSRGHL 206 (561)
Q Consensus 132 ~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~a-d~vV~AdG~~s~~ 206 (561)
.|...|.+.+++.|++|+++++++++..+ +++|+||.... +|. ...+.+ +.||+|+|..+..
T Consensus 218 ~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 218 ALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-----RGR-------EVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-----CCc-------EEEEEcCCEEEEecCCcccc
Confidence 45667888888899999999999999864 68899987632 121 124566 6899999999885
No 129
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.04 E-value=1e-08 Score=107.24 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=56.3
Q ss_pred CCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccC
Q psy14496 123 HGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEG 201 (561)
Q Consensus 123 ~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG 201 (561)
.....++...+.+.|.+.+.+ .|++++++++|+++..++++. +.|.+.+. .+|+ ..+++||+||.|.|
T Consensus 176 p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v~v~~t---~~g~-------~~~i~Ad~VV~AAG 244 (497)
T PRK13339 176 DEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEVTVKDR---NTGE-------KREQVADYVFIGAG 244 (497)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEEEEEec---CCCc-------eEEEEcCEEEECCC
Confidence 346678999999999999865 589999999999997653433 33432100 0110 12689999999999
Q ss_pred CCchhhHHHHHHcCCCC
Q psy14496 202 SRGHLSKQIIKKFNLDN 218 (561)
Q Consensus 202 ~~s~~~~~l~~~~g~~~ 218 (561)
.+|. .+...+|+..
T Consensus 245 awS~---~La~~~Gi~~ 258 (497)
T PRK13339 245 GGAI---PLLQKSGIPE 258 (497)
T ss_pred cchH---HHHHHcCCCc
Confidence 9985 3444467654
No 130
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.04 E-value=2.5e-09 Score=106.36 Aligned_cols=113 Identities=28% Similarity=0.429 Sum_probs=77.9
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
|||+|||||||||++|..|++. |++|+|||+.+ +|+.+... ..+ .
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~-~gg~~~~~-----~~~----~------------------- 45 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA------NLKTLIIEGME-PGGQLTTT-----TEV----E------------------- 45 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEeccC-CCcceeec-----ccc----c-------------------
Confidence 6999999999999999999999 99999999876 44422100 000 0
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
.++. ++ ..+...++...+.+.+++.|+++++ .+|+++..++ ..+.|.+.
T Consensus 46 -------~~~~--~~--------~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~~~v~~~----------- 94 (300)
T TIGR01292 46 -------NYPG--FP--------EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RPFKVKTG----------- 94 (300)
T ss_pred -------ccCC--CC--------CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC--CeeEEEeC-----------
Confidence 0010 00 0123346777888888889999998 8898887642 22345442
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++.++++|.||.|+|....
T Consensus 95 ----~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 95 ----DGKEYTAKAVIIATGASAR 113 (300)
T ss_pred ----CCCEEEeCEEEECCCCCcc
Confidence 2458999999999997653
No 131
>KOG1399|consensus
Probab=99.04 E-value=2.9e-09 Score=109.25 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=94.4
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeC--hhhHHhhccccccCCccccccch
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIID--PRSIFELFPKEKLNKLFNTPVIE 97 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~--~~~l~~l~~~~~~~~~~~~~~~~ 97 (561)
++..+|+|||||||||++|..|.+. |++|+|+||.+.+|+....-.-.+ ... ++.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~------g~~v~vfEr~~~iGGlW~y~~~~~~~~ss---~Y~-------------- 60 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLRE------GHEVVVFERTDDIGGLWKYTENVEVVHSS---VYK-------------- 60 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHC------CCCceEEEecCCccceEeecCcccccccc---hhh--------------
Confidence 5678999999999999999999999 999999999999987543210000 000 000
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC--CEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14496 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG--IDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~g--v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
.+..-.++.-..++.+.+|.. ...+..++.++.+.|.+.|++-+ ..|.+++.|..+....+ ..|.|.+.+...
T Consensus 61 -~l~tn~pKe~~~~~dfpf~~~---~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~ 135 (448)
T KOG1399|consen 61 -SLRTNLPKEMMGYSDFPFPER---DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGT 135 (448)
T ss_pred -hhhccCChhhhcCCCCCCccc---CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCc
Confidence 000000111112333333331 22555777899999999998866 47889998888876532 347777743210
Q ss_pred ccCCceecccccCeEEecCEEEEccCCC
Q psy14496 176 NKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
...+.-+|.||.|+|.+
T Consensus 136 -----------~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 136 -----------QIEEEIFDAVVVCTGHY 152 (448)
T ss_pred -----------ceeEEEeeEEEEcccCc
Confidence 01467899999999977
No 132
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.04 E-value=1.2e-07 Score=94.11 Aligned_cols=82 Identities=23% Similarity=0.441 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch-hhHH
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH-LSKQ 209 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~-~~~~ 209 (561)
....+-+.+.+++.|++++++++|.+++.. ++.+.+|.+. +|.++.+|.||+|-|..+. +-..
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~---------------~g~~i~~~~vvlA~Grsg~dw~~~ 236 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLT---------------KGEEIEADYVVLAPGRSGRDWFEM 236 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEcc---------------CCcEEecCEEEEccCcchHHHHHH
Confidence 467788888999999999999999999886 5556677774 3679999999999998887 5567
Q ss_pred HHHHcCCCCCCCCccccceeE
Q psy14496 210 IIKKFNLDNKKDPQTYSLGIK 230 (561)
Q Consensus 210 l~~~~g~~~~~~~~~~~~~~~ 230 (561)
+.+++|+.....| +.+|++
T Consensus 237 l~~K~Gv~~~~~p--~dIGVR 255 (486)
T COG2509 237 LHKKLGVKMRAKP--FDIGVR 255 (486)
T ss_pred HHHhcCcccccCC--eeEEEE
Confidence 7777888775554 445555
No 133
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=99.04 E-value=1e-10 Score=88.28 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=46.6
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEE-EccCCCccCCcccccCCCCCeeEEC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQ-INAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~-~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
++|.++|++ |+.|.-+||.+++...++ + ... +||+.|.+||.|+.+||..||++..
T Consensus 31 v~d~~kCi~------C~~C~~yCPe~~i~~~~~--~--~~~~idYdyCKGCGICa~vCP~kaI~Mv~ 87 (91)
T COG1144 31 VVDEDKCIN------CKLCWLYCPEPAILEEEG--G--YKVRIDYDYCKGCGICANVCPVKAIEMVR 87 (91)
T ss_pred EEccccccc------CceeEEECCchheeeccC--C--ccceeEcccccCceechhhCChhheEeEe
Confidence 468899999 567999999999876653 2 122 9999999999999999999999954
No 134
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=2.7e-09 Score=116.06 Aligned_cols=170 Identities=22% Similarity=0.291 Sum_probs=95.3
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-ee-cce---eC----hhhHHhhccccc-c
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LS-GAI---ID----PRSIFELFPKEK-L 87 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~-G~~---~~----~~~l~~l~~~~~-~ 87 (561)
++++++||||||||+|||+||+.+++. |.+|+|+||.+..++.. .+ |++ +. ....+..+.+.. .
T Consensus 4 ~~~~~~DVvVIG~G~AGl~AAl~Aae~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~ 77 (626)
T PRK07803 4 VERHSYDVVVIGAGGAGLRAAIEARER------GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRG 77 (626)
T ss_pred ccceeecEEEECcCHHHHHHHHHHHHC------CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHH
Confidence 345789999999999999999999999 99999999997655431 12 211 11 011111111111 0
Q ss_pred CCc------ccc--ccchhhhhhhcCCCCcccCC---CCCC-ceeecCC-cEEe-----eHHHHHHHHHHHHHHC-----
Q psy14496 88 NKL------FNT--PVIEERFLFLSSKKSYKIPS---WILP-ICFKNHG-NYII-----SLSDLVRWMGKKAENM----- 144 (561)
Q Consensus 88 ~~~------~~~--~~~~~~~~~~~~~~~~~~~~---~~~p-~~~~~~~-~~~i-----~r~~l~~~L~~~a~~~----- 144 (561)
+.. ... ....+.+.|+... ++.+.. ..+. .....+. .... .-..+.+.|.+.+.+.
T Consensus 78 g~~l~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~ 156 (626)
T PRK07803 78 GKFLNNWRMAELHAKEAPDRVWELETY-GALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDH 156 (626)
T ss_pred hccCCcHHHHHHHHHHhHHHHHHHHHC-CCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhcccc
Confidence 000 000 1122334444331 111110 0000 0000000 0111 1246778888877765
Q ss_pred ---C-----CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 145 ---G-----IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 145 ---g-----v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
| |+++.++.|+++..+ ++++.||..-+. .+|+. ..+.|+.||+|+|..+.
T Consensus 157 ~~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 157 AELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWR---ESGRF-------VLFEAPAVVLATGGIGK 214 (626)
T ss_pred ccccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEcCeEEECCCcccC
Confidence 6 999999999999865 677888765221 12221 36899999999998654
No 135
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=4.2e-09 Score=113.85 Aligned_cols=169 Identities=17% Similarity=0.206 Sum_probs=94.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-e-ccee---C----hhhHHhhccccc-cCC-
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-S-GAII---D----PRSIFELFPKEK-LNK- 89 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~-G~~~---~----~~~l~~l~~~~~-~~~- 89 (561)
.++||||||+|+|||+||+.+++. |.+|+|+||.+..++... + |++. . ....+..+.+.. .+.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~ 75 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEA------GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDF 75 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHc------CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCC
Confidence 357999999999999999999999 999999999987654322 2 2211 1 011111111111 000
Q ss_pred -----ccccc--cchhhhhhhcCCCCcccCCCC-CCceeecCCcEEe---------eHHHHHHHHHHHHHHCC----CEE
Q psy14496 90 -----LFNTP--VIEERFLFLSSKKSYKIPSWI-LPICFKNHGNYII---------SLSDLVRWMGKKAENMG----IDI 148 (561)
Q Consensus 90 -----~~~~~--~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~i---------~r~~l~~~L~~~a~~~g----v~i 148 (561)
..... .....+.|+...+ +.+.... -.......++... .-..+.+.|.+.+.+.+ |++
T Consensus 76 ~~d~~~v~~~~~~s~~~i~~L~~~G-v~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i 154 (589)
T PRK08641 76 LANQPPVKAMCEAAPGIIHLLDRMG-VMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTK 154 (589)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcC-CCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEE
Confidence 00000 1112334443311 1111000 0000000011111 23457778887776533 889
Q ss_pred EcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 149 FSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 149 ~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+.++.++++..+++++++||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 155 ~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 155 YEGWEFLGAVLDDEGVCRGIVAQDL---FTMEI-------ESFPADAVIMATGGPGII 202 (589)
T ss_pred EeeEEEEEEEECCCCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCCcCC
Confidence 9999999998766788999987431 12221 357999999999988763
No 136
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.5e-09 Score=104.85 Aligned_cols=114 Identities=30% Similarity=0.467 Sum_probs=77.0
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
+.+||+|||||||||+||+.++++ +++ ++|+|+. .+|+..... . ....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~------~l~~~li~~~~-~~gg~~~~~-----~----~ven--------------- 50 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA------GLKVVLILEGG-EPGGQLTKT-----T----DVEN--------------- 50 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc------CCCcEEEEecC-CcCCccccc-----e----eecC---------------
Confidence 579999999999999999999999 999 5556654 444211000 0 0000
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+|.+ .-.+.-..|.+.+.++++..|+++.. ..|.++...++ ...|.+.+
T Consensus 51 -----------ypg~----------~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~------- 99 (305)
T COG0492 51 -----------YPGF----------PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDK------- 99 (305)
T ss_pred -----------CCCC----------ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECC-------
Confidence 1100 00134457888899999889999987 67777765422 45566643
Q ss_pred ceecccccCeEEecCEEEEccCCCch
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
| ++++|.||+|+|....
T Consensus 100 --------~-~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 100 --------G-TYEAKAVIIATGAGAR 116 (305)
T ss_pred --------C-eEEEeEEEECcCCccc
Confidence 4 4999999999997655
No 137
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.03 E-value=3.4e-09 Score=110.47 Aligned_cols=164 Identities=20% Similarity=0.228 Sum_probs=92.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeC----hhhHHhhccccc-cCC-----
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIID----PRSIFELFPKEK-LNK----- 89 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~----~~~l~~l~~~~~-~~~----- 89 (561)
+++||||||+|.|||+||+.+ .. |.+|+|+||.+..++... +++.+. ....+..+.++. .+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a-~~------G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~ 75 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNL-RK------DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNL 75 (433)
T ss_pred ccccEEEECchHHHHHHHHHh-cc------CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 579999999999999999997 47 999999999987765421 221111 111122222211 000
Q ss_pred -cccc--ccchhhhhhhcCCCCcccCCC----CCCceeecCCcEEe-----eHHHHHHHHHHHHHH-CCCEEEcCceEeE
Q psy14496 90 -LFNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNHGNYII-----SLSDLVRWMGKKAEN-MGIDIFSGFSASE 156 (561)
Q Consensus 90 -~~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~~i-----~r~~l~~~L~~~a~~-~gv~i~~g~~v~~ 156 (561)
.... ....+.+.|+.+.+ +.+... .......+.....+ .-..+.+.|.+.+.+ .||+|++++.+++
T Consensus 76 ~lv~~~~~~s~e~i~wL~~~G-v~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~ 154 (433)
T PRK06175 76 EAVKILANESIENINKLIDMG-LNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVD 154 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeee
Confidence 0000 01223344544321 111100 00000000000111 124677888888865 5999999999999
Q ss_pred EEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 157 ILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 157 i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+..+ ++++++|...+ ++. ...+.|+.||+|+|..+.
T Consensus 155 Li~~-~~~v~Gv~~~~-----~g~-------~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 155 IIEN-DNTCIGAICLK-----DNK-------QINIYSKVTILATGGIGG 190 (433)
T ss_pred eEec-CCEEEEEEEEE-----CCc-------EEEEEcCeEEEccCcccc
Confidence 9865 67788875421 111 136899999999998664
No 138
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.03 E-value=1.7e-09 Score=113.80 Aligned_cols=147 Identities=20% Similarity=0.325 Sum_probs=88.2
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee----ecceeChhhHHhhccccccCCccccccch-
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL----SGAIIDPRSIFELFPKEKLNKLFNTPVIE- 97 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~----~G~~~~~~~l~~l~~~~~~~~~~~~~~~~- 97 (561)
|||+|||||+||+.+|..|++. |.+|+|+|+.....+... .|+. ....+.+-+..+ +.......+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~------G~~v~Lie~~~~~~g~~~c~ps~gG~-a~g~l~rEidaL--GG~~~~~~d~~ 71 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM------GAKTLLLTLNLDTIGKCSCNPAIGGP-AKGILVKEIDAL--GGLMGKAADKA 71 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCEEEEecccccccCCCcccccccc-ccchhhhhhhcc--cchHHHHHHhh
Confidence 6999999999999999999999 999999998754322111 1111 000011111111 0000000000
Q ss_pred -hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14496 98 -ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 98 -~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
.++..+.... -|. .. ....++++..+.+.+.+.+++. |++++.+ .|+++..++++.+.+|.+.+
T Consensus 72 ~i~~r~ln~sk--------gpA-V~-~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~--- 137 (617)
T TIGR00136 72 GLQFRVLNSSK--------GPA-VR-ATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD--- 137 (617)
T ss_pred ceeheecccCC--------CCc-cc-ccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC---
Confidence 0011111100 010 00 1124678889999999988876 7888755 67777654467888898843
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCc
Q psy14496 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
|..+.|+.||+|+|.+.
T Consensus 138 ------------G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 138 ------------GLKFRAKAVIITTGTFL 154 (617)
T ss_pred ------------CCEEECCEEEEccCccc
Confidence 45899999999999984
No 139
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.02 E-value=2.7e-09 Score=112.42 Aligned_cols=156 Identities=24% Similarity=0.317 Sum_probs=91.2
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee-cce---eC-hhhHHhhccccc-cCCc------
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-GAI---ID-PRSIFELFPKEK-LNKL------ 90 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~-G~~---~~-~~~l~~l~~~~~-~~~~------ 90 (561)
+||+|||||+|||++|+.+++. |.+|+|+||....+..... |++ +. ....+..+.++. .+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~------G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~ 75 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK------GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEV 75 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHH
Confidence 7999999999999999999999 9999999998653322221 221 00 111111111111 0000
Q ss_pred ccc--ccchhhhhhhcCCCCcccCC------CCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCC
Q psy14496 91 FNT--PVIEERFLFLSSKKSYKIPS------WILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSK 162 (561)
Q Consensus 91 ~~~--~~~~~~~~~~~~~~~~~~~~------~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~ 162 (561)
... ....+.+.|+.+. ++.+.. ...|...... ...-..+.+.|.+.+++.|++++.+ .++++..+ +
T Consensus 76 v~~~~~~~~~~i~~L~~~-Gv~f~~~~~~~g~~~~r~~~~~---~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~ 149 (466)
T PRK08401 76 VWNVISKSSEAYDFLTSL-GLEFEGNELEGGHSFPRVFTIK---NETGKHIIKILYKHARELGVNFIRG-FAEELAIK-N 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCcccCCCcCCccCCeEEECC---CCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEee-C
Confidence 000 0112333444331 111110 0111100000 0123468889999998899999876 78888754 6
Q ss_pred CCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 163 NNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 163 g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+++++|.+. +..+.++.||+|+|..|.+
T Consensus 150 g~v~Gv~~~----------------g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 150 GKAYGVFLD----------------GELLKFDATVIATGGFSGL 177 (466)
T ss_pred CEEEEEEEC----------------CEEEEeCeEEECCCcCcCC
Confidence 777787762 3478999999999999875
No 140
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.02 E-value=3.1e-09 Score=112.62 Aligned_cols=145 Identities=19% Similarity=0.254 Sum_probs=87.0
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
..|+|||||++||++|..|.+. |++|++|||.+.+||......-..+ .....++. +.......
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~------g~~~~~fE~~~~iGG~W~~~~~~~~-g~~~~y~s------l~~n~sk~---- 64 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE------GLEVTCFEKSDDIGGLWRYTENPED-GRSSVYDS------LHTNTSKE---- 64 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT------T-EEEEEESSSSSSGGGCHSTTCCC-SEGGGSTT-------B-SS-GG----
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCeEEecCCCCCccCeeCCcCCC-Cccccccc------eEEeeCch----
Confidence 4799999999999999999999 9999999999999875421100000 00000000 00000110
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCC--EEEcCceEeEEEEcCCC---CEEEEEeccccccc
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGI--DIFSGFSASEILYDSKN---NVCGIATNNFGINK 177 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv--~i~~g~~v~~i~~~~~g---~v~~V~~~~~~~~~ 177 (561)
-..++.+.+|.. ... ..++.++.++|.+.|+..++ .|+++++|+++...++. ..+.|.+.+
T Consensus 65 -----~~~fsdfp~p~~---~p~-f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~----- 130 (531)
T PF00743_consen 65 -----MMAFSDFPFPED---YPD-FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN----- 130 (531)
T ss_dssp -----GSCCTTS-HCCC---CSS-SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----
T ss_pred -----HhcCCCcCCCCC---CCC-CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----
Confidence 111222223321 112 36889999999999998664 69999999999875442 346676632
Q ss_pred CCceecccccCeEEecCEEEEccCCCch
Q psy14496 178 EGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+|+. .+..+|.||.|+|.++.
T Consensus 131 ~g~~-------~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 131 DGKE-------ETEEFDAVVVATGHFSK 151 (531)
T ss_dssp TTEE-------EEEEECEEEEEE-SSSC
T ss_pred CCeE-------EEEEeCeEEEcCCCcCC
Confidence 2321 35578999999998875
No 141
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.02 E-value=3.4e-09 Score=114.69 Aligned_cols=165 Identities=22% Similarity=0.289 Sum_probs=93.0
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-e-eccee---C---h-hhHHhhccccc------cC
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-L-SGAII---D---P-RSIFELFPKEK------LN 88 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~-~G~~~---~---~-~~l~~l~~~~~------~~ 88 (561)
||||||||+|||+||+.+++. |.+|+|+||.+..++.. . .|++. . + ...+..+.+.. ..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~------G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d 74 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA------GLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLAD 74 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC------CCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCC
Confidence 899999999999999999999 99999999988655432 1 12211 1 1 11111111100 00
Q ss_pred -Cccccc--cchhhhhhhcCCCCcccCCC----C--CCceee--cCCcEEe--eHHHHHHHHHHHHHHCCCEEEcCceEe
Q psy14496 89 -KLFNTP--VIEERFLFLSSKKSYKIPSW----I--LPICFK--NHGNYII--SLSDLVRWMGKKAENMGIDIFSGFSAS 155 (561)
Q Consensus 89 -~~~~~~--~~~~~~~~~~~~~~~~~~~~----~--~p~~~~--~~~~~~i--~r~~l~~~L~~~a~~~gv~i~~g~~v~ 155 (561)
...... ...+.+.|+...+ +.+... . .+.... ....+.. .-..+...|.+.+.+.|+++++++.++
T Consensus 75 ~~~v~~~~~~s~~~i~~L~~~G-v~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~ 153 (566)
T TIGR01812 75 QDAVEYMCQEAPKAILELEHWG-VPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFAL 153 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEE
Confidence 000000 1123344443211 111000 0 000000 0000111 123677888888888899999999999
Q ss_pred EEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 156 EILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 156 ~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
++..+ ++++.||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 154 ~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 154 DLIHD-DGRVRGVVAYDL---KTGEI-------VFFRAKAVVLATGGYGRI 193 (566)
T ss_pred EEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCeEEECCCcccCC
Confidence 99875 678888865321 12211 368999999999998864
No 142
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.02 E-value=6.8e-09 Score=111.73 Aligned_cols=180 Identities=17% Similarity=0.141 Sum_probs=96.8
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC--CCCCce-eecceeC-h--h---------hHHhhccc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS--ELGAHI-LSGAIID-P--R---------SIFELFPK 84 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~--~~g~~~-~~G~~~~-~--~---------~l~~l~~~ 84 (561)
++++||||||+|.|||++|+.+++. |.+|+||||.+ ..|+.. .+++.+. + . ..+.++..
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~------G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d 75 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADA------GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQD 75 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHH
Confidence 4679999999999999999999999 99999999998 556643 2322211 1 0 01111111
Q ss_pred cc-c-----CCcc------ccc---cchhhhhhhcCCCCcccCC-CCC------Cceee--cCCcEEe---eHHHHHHHH
Q psy14496 85 EK-L-----NKLF------NTP---VIEERFLFLSSKKSYKIPS-WIL------PICFK--NHGNYII---SLSDLVRWM 137 (561)
Q Consensus 85 ~~-~-----~~~~------~~~---~~~~~~~~~~~~~~~~~~~-~~~------p~~~~--~~~~~~i---~r~~l~~~L 137 (561)
+. . ...+ ... ...+.+.|+.+.+ +.+.. ... ....+ ....+.. .-..+.+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~G-v~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l 154 (549)
T PRK12834 76 WLGSAGFDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLG-LRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPF 154 (549)
T ss_pred HHhccCCCCccccchHHHHHHHHHhCCHHHHHHHHHcC-CeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHH
Confidence 11 0 0000 000 1234556665422 21110 000 00000 0000000 112466666
Q ss_pred HHHHH----HCCCEEEcCceEeEEEEcCCCCEEEEEeccc--ccccCCceeccccc-CeEEecCEEEEccCCCchhh
Q psy14496 138 GKKAE----NMGIDIFSGFSASEILYDSKNNVCGIATNNF--GINKEGIIKKNFQL-GMELYAKYTLFAEGSRGHLS 207 (561)
Q Consensus 138 ~~~a~----~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~--~~~~~g~~~~~f~~-g~~i~ad~vV~AdG~~s~~~ 207 (561)
.+.++ +.|++++++++++++..+ +++|+||...+. +...+|+....=.+ -..+.|+-||+|+|..+...
T Consensus 155 ~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~ 230 (549)
T PRK12834 155 ERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNH 230 (549)
T ss_pred HHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCH
Confidence 66654 236999999999999875 788999985211 00000000000000 13689999999999999863
No 143
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.01 E-value=5.7e-09 Score=112.59 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecC-EEEEccCCCchh
Q psy14496 133 LVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAK-YTLFAEGSRGHL 206 (561)
Q Consensus 133 l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad-~vV~AdG~~s~~ 206 (561)
+...|.+.+++.|++|+++++++++..+++++|+||.... +|+. ..++|+ -||+|+|..+.-
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~~-------~~i~a~~aVilAtGGf~~N 277 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGRT-------LRIGARRGVILATGGFDHD 277 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCcE-------EEEEeceeEEEecCcccCC
Confidence 4556777788889999999999999987678999997732 2221 368887 699999988873
No 144
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.01 E-value=2.4e-09 Score=110.53 Aligned_cols=147 Identities=24% Similarity=0.356 Sum_probs=89.0
Q ss_pred EEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecc-e---eChhhHHhhcccccc-----CCcccccc
Q psy14496 26 IIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGA-I---IDPRSIFELFPKEKL-----NKLFNTPV 95 (561)
Q Consensus 26 vIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~-~---~~~~~l~~l~~~~~~-----~~~~~~~~ 95 (561)
+|||||+|||++|+.|++. |++|+|+||.+.+|..+. +|. . .+.....+++..+.. ...+....
T Consensus 1 vIIGgG~aGl~aAi~aa~~------G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE------GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFS 74 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc------CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCC
Confidence 6999999999999999999 999999999998876542 331 1 111111111111110 00011111
Q ss_pred chhhhhhhcCCCCcccCCCCCCceeecCC-cE--EeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecc
Q psy14496 96 IEERFLFLSSKKSYKIPSWILPICFKNHG-NY--IISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNN 172 (561)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~--~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 172 (561)
..+.+.|+...+ +.+.. ...+ .| .-....+.+.|.+.+++.|+++++++.|+++..+ ++ .+.|++.
T Consensus 75 ~~d~~~~~~~~G-v~~~~-------~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~- 143 (400)
T TIGR00275 75 NKDLIDFFESLG-LELKV-------EEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETS- 143 (400)
T ss_pred HHHHHHHHHHcC-CeeEE-------ecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEEC-
Confidence 223334443321 11110 0001 11 1134678899999999999999999999999754 22 3455552
Q ss_pred cccccCCceecccccCeEEecCEEEEccCCCc
Q psy14496 173 FGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 173 ~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
+.++.+|.||.|+|..|
T Consensus 144 ---------------~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 144 ---------------GGEYEADKVILATGGLS 160 (400)
T ss_pred ---------------CcEEEcCEEEECCCCcc
Confidence 24789999999999876
No 145
>PLN02815 L-aspartate oxidase
Probab=99.00 E-value=5e-09 Score=112.67 Aligned_cols=171 Identities=18% Similarity=0.269 Sum_probs=96.5
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-e-cce---eCh-hhHHhhccccc-cCCc
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-S-GAI---IDP-RSIFELFPKEK-LNKL 90 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~-G~~---~~~-~~l~~l~~~~~-~~~~ 90 (561)
.++.++||||||+|.|||++|+.+++. | +|+|+||.+..++... + |++ +.+ ...+.++.++. .+..
T Consensus 25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~------G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~ 97 (594)
T PLN02815 25 ESTKYFDFLVIGSGIAGLRYALEVAEY------G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAF 97 (594)
T ss_pred CcccccCEEEECccHHHHHHHHHHhhC------C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccC
Confidence 345679999999999999999999999 9 9999999988765322 2 221 111 11222222211 0000
Q ss_pred ------ccc--ccchhhhhhhcCCCCcccCCCC---C-CceeecCC--c-E-E--eeHHHHHHHHHHHHHHC-CCEEEcC
Q psy14496 91 ------FNT--PVIEERFLFLSSKKSYKIPSWI---L-PICFKNHG--N-Y-I--ISLSDLVRWMGKKAENM-GIDIFSG 151 (561)
Q Consensus 91 ------~~~--~~~~~~~~~~~~~~~~~~~~~~---~-p~~~~~~~--~-~-~--i~r~~l~~~L~~~a~~~-gv~i~~g 151 (561)
... ....+.+.|+...+ +.+.... + ......+. . + . ..-..+.+.|.+.+.+. |++++.+
T Consensus 98 ~~d~~lv~~~~~~s~e~i~~L~~~G-v~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~ 176 (594)
T PLN02815 98 LCDEETVRVVCTEGPERVKELIAMG-ASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEH 176 (594)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhC-CeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 000 01123344443311 1111000 0 00000000 0 0 0 12246778888888764 8999999
Q ss_pred ceEeEEEEcCCC---CEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 152 FSASEILYDSKN---NVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 152 ~~v~~i~~~~~g---~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+.++++..++++ +++||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 177 ~~~~~Li~~~~g~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 177 HFAIDLLTSQDGGSIVCHGADVLDT---RTGEV-------VRFISKVTLLASGGAGHI 224 (594)
T ss_pred eEhheeeeecCCCccEEEEEEEEEc---CCCeE-------EEEEeceEEEcCCcceee
Confidence 999999875444 2788876321 12321 367999999999988753
No 146
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.00 E-value=4.4e-09 Score=111.54 Aligned_cols=164 Identities=23% Similarity=0.240 Sum_probs=95.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-ee-cce---eCh-hhHHhhccccc-cCCc----
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LS-GAI---IDP-RSIFELFPKEK-LNKL---- 90 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~-G~~---~~~-~~l~~l~~~~~-~~~~---- 90 (561)
++||+|||||+|||++|+.+++. |. |+|+||.+..++.. .+ |++ ..+ ...+..+.++. .+..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~------G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~ 74 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ------GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDR 74 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC------CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCH
Confidence 57999999999999999999998 97 99999997655532 12 221 111 11111221111 0000
Q ss_pred --ccc--ccchhhhhhhcCCCCcccCC-----CCCCceeecCCcEEe-----eHHHHHHHHHHHHHH-CCCEEEcCceEe
Q psy14496 91 --FNT--PVIEERFLFLSSKKSYKIPS-----WILPICFKNHGNYII-----SLSDLVRWMGKKAEN-MGIDIFSGFSAS 155 (561)
Q Consensus 91 --~~~--~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~i-----~r~~l~~~L~~~a~~-~gv~i~~g~~v~ 155 (561)
... ....+.+.|+...+ +.+.. +.............+ .-..+.+.|.+.+.+ .||++++++.|+
T Consensus 75 ~~v~~~~~~~~~~i~~L~~~G-v~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~ 153 (488)
T TIGR00551 75 EAVEFVVSDARSAVQWLVDQG-VLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENAL 153 (488)
T ss_pred HHHHHHHHhHHHHHHHHHHcC-CcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEee
Confidence 000 01123344444321 11110 000000000001111 235788899999987 699999999999
Q ss_pred EEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 156 EILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 156 ~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
++..+ ++++.+|.+.+. +. ...++++.||+|+|..|.+
T Consensus 154 ~l~~~-~g~v~Gv~~~~~-----~~-------~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 154 DLLIE-TGRVVGVWVWNR-----ET-------VETCHADAVVLATGGAGKL 191 (488)
T ss_pred eeecc-CCEEEEEEEEEC-----Cc-------EEEEEcCEEEECCCcccCC
Confidence 99865 677888876431 11 1368999999999999874
No 147
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.00 E-value=1.4e-07 Score=100.93 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
..+.+.|.+.+++.|++|+.++.|+++..+ ++++++|++.+ |.+++||.||.|.+....+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~---------------g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLAD---------------GERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECC---------------CCEEECCEEEECCcHHHHH
Confidence 578888999998999999999999999875 56677887743 4579999999998876554
No 148
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.99 E-value=4.4e-09 Score=109.46 Aligned_cols=138 Identities=22% Similarity=0.330 Sum_probs=84.1
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccch
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIE 97 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~ 97 (561)
.+..+||+|||||++||++|+.|.++ |.+ ++||||+..+|+..... .++... +..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~------g~~~~~i~Ek~~~~Gg~W~~~----------ry~~l~----~~~---- 60 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQA------GVPDFVIFEKRDDVGGTWRYN----------RYPGLR----LDS---- 60 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHc------CCCcEEEEEccCCcCCcchhc----------cCCceE----ECC----
Confidence 45679999999999999999999999 998 99999999887643110 000000 000
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC--CEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14496 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG--IDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~g--v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
+.....++...++. ...+ -....+...+.+.+++.+ .+|.+++.|..+..++++..+.|.+.+.+
T Consensus 61 -------p~~~~~~~~~p~~~----~~~~-~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~- 127 (443)
T COG2072 61 -------PKWLLGFPFLPFRW----DEAF-APFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG- 127 (443)
T ss_pred -------chheeccCCCccCC----cccC-CCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCC-
Confidence 00011122111210 0011 011124555666666654 46777778877877777778888885411
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++++|.||.|+|..|.
T Consensus 128 ------------~~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 128 ------------TGELTADFVVVATGHLSE 145 (443)
T ss_pred ------------eeeEecCEEEEeecCCCC
Confidence 012679999999997443
No 149
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.99 E-value=9.8e-09 Score=109.50 Aligned_cols=41 Identities=22% Similarity=0.475 Sum_probs=37.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+.++||||||+| |||++|+.+++. |.+|+||||.+..|+..
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~------G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAARE------GLSVALVEATDKFGGTT 45 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHC------CCcEEEEecCCCCCcce
Confidence 458999999999 999999999999 99999999998776654
No 150
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.98 E-value=5.7e-09 Score=112.82 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEec-CEEEEccCCCchh
Q psy14496 130 LSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYA-KYTLFAEGSRGHL 206 (561)
Q Consensus 130 r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~a-d~vV~AdG~~s~~ 206 (561)
-..|.+.|.+.+++.|++|+++++|+++..+ ++++++|.+.+ .++. .++++ +.||+|+|..+.-
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~----~~~~--------~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVET----PGGL--------QEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEE----CCcE--------EEEEeCCEEEEcCCCcccC
Confidence 3457788999999999999999999999875 67888887632 1111 25888 9999999999873
No 151
>PLN02612 phytoene desaturase
Probab=98.97 E-value=1.9e-07 Score=100.54 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14496 132 DLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 132 ~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
.+.+.|.+.+++.|++|+++++|++|..++++.+++|.+.+ |+++++|.||.|...
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---------------G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---------------GSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---------------CcEEECCEEEECCCH
Confidence 46677777777789999999999999887677677777632 567999999999864
No 152
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.97 E-value=7.3e-09 Score=112.03 Aligned_cols=62 Identities=27% Similarity=0.361 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecC-EEEEccCCCchh
Q psy14496 132 DLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAK-YTLFAEGSRGHL 206 (561)
Q Consensus 132 ~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad-~vV~AdG~~s~~ 206 (561)
.+.+.|.+.+++.|++|++++.|+++..+ ++++++|.+.+. +++ ..+.++ .||.|+|..+.-
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~----~~~--------~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDA----GGE--------RRITARRGVVLACGGFSHD 277 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcC----Cce--------EEEEeCCEEEEcCCCccch
Confidence 46677888888899999999999999875 678888877431 111 257775 899999988863
No 153
>PRK07233 hypothetical protein; Provisional
Probab=98.96 E-value=2.6e-07 Score=97.01 Aligned_cols=38 Identities=39% Similarity=0.632 Sum_probs=36.1
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+|+|||||+|||++|+.|++. |++|+|+|+.+.+|+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~------G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR------GHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCCce
Confidence 599999999999999999999 99999999999999865
No 154
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.96 E-value=6.4e-09 Score=111.14 Aligned_cols=115 Identities=25% Similarity=0.373 Sum_probs=81.6
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...+||+|||||||||++|+.|++. |++|+|+|+. +|+..... .. +.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~------G~~v~li~~~--~GG~~~~~-----~~-------~~------------- 255 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK------GIRTGIVAER--FGGQVLDT-----MG-------IE------------- 255 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecC--CCCeeecc-----Cc-------cc-------------
Confidence 4469999999999999999999999 9999999864 44432100 00 00
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
.++. ++ .....++.+.|.+.+.+.|++++.+++|+++...+ ..+.|.+.
T Consensus 256 ----------~~~~--~~---------~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~~~-------- 304 (517)
T PRK15317 256 ----------NFIS--VP---------ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA--GLIEVELA-------- 304 (517)
T ss_pred ----------ccCC--CC---------CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEC--------
Confidence 0000 00 12344788889999989999999999999997643 23445542
Q ss_pred ceecccccCeEEecCEEEEccCCCch
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+|.++.+|.||+|+|.++.
T Consensus 305 -------~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 305 -------NGAVLKAKTVILATGARWR 323 (517)
T ss_pred -------CCCEEEcCEEEECCCCCcC
Confidence 2457999999999998653
No 155
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.95 E-value=1.4e-08 Score=109.84 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEec-CEEEEccCCCchhhHHH
Q psy14496 132 DLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYA-KYTLFAEGSRGHLSKQI 210 (561)
Q Consensus 132 ~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~a-d~vV~AdG~~s~~~~~l 210 (561)
.|...|.+.+++.|++++.++.++++..+ ++++++|.+.. +|+. .++.+ +.||+|+|..+.. +++
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~~-------~~i~A~~~VVlAtGg~~~n-~em 287 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQ-----GGVR-------RRIRARGGVVLATGGFNRH-PQL 287 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEec-----CCeE-------EEEEccceEEECCCCcccC-HHH
Confidence 57788889999999999999999999865 68889987742 2211 35776 7899999999885 344
Q ss_pred HHHc
Q psy14496 211 IKKF 214 (561)
Q Consensus 211 ~~~~ 214 (561)
.+++
T Consensus 288 ~~~~ 291 (578)
T PRK12843 288 RREL 291 (578)
T ss_pred HHHh
Confidence 4444
No 156
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.94 E-value=4.1e-09 Score=114.93 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
..+...|.+.+.+.||+++.++.++++..+ ++++.||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~G~~-------~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCL---ITGEL-------RAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCcccCC
Confidence 356677888888899999999999999875 678888876421 23321 357899999999987764
No 157
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.94 E-value=6.2e-09 Score=112.59 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCC---CCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSK---NNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~---g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
..+.+.|.+.+.+.||+++.++.++++..+++ +++.||...+. ++|+. ..+.|+.||+|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGEI-------HVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCeE-------EEEEeCeEEECCCCCccc
Confidence 46888899989889999999999999986543 78888875220 12221 368999999999998753
No 158
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=98.93 E-value=3.7e-10 Score=99.41 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=47.5
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecC---c---eeEEEEccCCCccCCcccccCCCCCeeE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN---K---IQHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~---~---~~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
.+.+.|+. |+.|..+||++||+++.... | .+.+.||+.+||-||.|..+||++||..
T Consensus 52 l~~~~CIg------C~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~ 114 (172)
T COG1143 52 LDRDKCIG------CGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVL 114 (172)
T ss_pred ccccCCcc------hhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcC
Confidence 35677999 46699999999999976522 2 2578899999999999999999999975
No 159
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.92 E-value=1.7e-08 Score=105.61 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=42.8
Q ss_pred CCCCCCCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 13 NKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 13 ~~~~~~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
....++.....+|+|||||+||||+|+.|++. .+.||.+|+|+|+.+.+|++.
T Consensus 13 ~~~~~~~~~~~~a~IIGaGiAGLAAA~~L~~d--g~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 13 RPRKPEGVDNKKAYIIGSGLASLAAAVFLIRD--GQMPGENITILEELDVPGGSL 65 (576)
T ss_pred cCCCCCCCCCCeEEEECCCHHHHHHHHHHHHc--cCCCCCcEEEEeCCCCCCCCc
Confidence 33344555568999999999999999999985 123579999999999998875
No 160
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.91 E-value=1.6e-08 Score=108.75 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecC-EEEEccCCCchh
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAK-YTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad-~vV~AdG~~s~~ 206 (561)
..|.+.|.+.+++.|++++.+++|++++.+ ++++++|.... +|+ ...+.++ .||+|+|..+.-
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-----~g~-------~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-----DGR-------EVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-----CCe-------EEEEEecceEEEecCCccCC
Confidence 356778888898999999999999999875 68899987732 222 1367884 799999988874
No 161
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.91 E-value=5.4e-10 Score=96.75 Aligned_cols=54 Identities=26% Similarity=0.478 Sum_probs=46.6
Q ss_pred CCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14496 488 KIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 488 ~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
-.|..|+ +.||.++||++||+.+. ..+++|+++|++||+|..+||+++|..+.-
T Consensus 51 v~C~qCe----daPC~~vCP~~AI~~~~-----~~v~V~~ekCiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 51 VVCHHCE----DAPCAEVCPVGAITRDD-----GAVQVDEEKCIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred CcCCCCC----CcchhhhCchhheeecC-----CceEEchhhccCcchhhhcCCcceEEEEee
Confidence 3576665 79999999999988763 379999999999999999999999997653
No 162
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.90 E-value=8.2e-09 Score=108.41 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=40.2
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhH
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l 78 (561)
+|||+||||||||+++|+.|+++ |++|+|+|+. .+|+....-+.+..+.|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~-~~GG~c~~~gciPsk~l 51 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH------GAKVAIAEEP-RVGGTCVIRGCVPKKLM 51 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCcEEEEecC-ccCceeecCCcCchHHH
Confidence 69999999999999999999999 9999999985 56776544444444433
No 163
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.90 E-value=1.1e-08 Score=109.39 Aligned_cols=114 Identities=25% Similarity=0.386 Sum_probs=79.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...+||+|||||||||++|+.|++. |++|+|+|. .+|+... +.. .+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~------G~~v~li~~--~~GG~~~-----~~~-------~~~------------- 256 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK------GLRTAMVAE--RIGGQVK-----DTV-------GIE------------- 256 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEec--CCCCccc-----cCc-------Ccc-------------
Confidence 4469999999999999999999999 999999975 2444221 000 000
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
.+.. .+ .....++.+.+.+.+.+.|++++.+++|+++..+++ ...|.+.
T Consensus 257 ----------~~~~--~~---------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~--~~~v~~~-------- 305 (515)
T TIGR03140 257 ----------NLIS--VP---------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDG--LIVVTLE-------- 305 (515)
T ss_pred ----------cccc--cC---------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCC--eEEEEEC--------
Confidence 0000 00 023346778888888888999999999999875422 2344442
Q ss_pred ceecccccCeEEecCEEEEccCCCc
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
+|.++.+|.+|+|+|.+.
T Consensus 306 -------~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 306 -------SGEVLKAKSVIVATGARW 323 (515)
T ss_pred -------CCCEEEeCEEEECCCCCc
Confidence 245799999999999764
No 164
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.90 E-value=1.7e-08 Score=106.68 Aligned_cols=41 Identities=51% Similarity=0.895 Sum_probs=36.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
..|||+||||||||+++|+.|+++ |++|+|+|+.+ .|+...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~------G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL------GLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC------CCcEEEEeccc-ccccee
Confidence 469999999999999999999999 99999999877 666543
No 165
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.89 E-value=1.5e-08 Score=109.07 Aligned_cols=112 Identities=25% Similarity=0.445 Sum_probs=76.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.|||+|||||||||++|+.|++. |++|+|||+.. .|+.... ...+ .
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~------g~~V~liE~~~-~GG~~~~-----~~~i----~------------------ 49 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA------KLDTLIIEKDD-FGGQITI-----TSEV----V------------------ 49 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecCC-CCceEEe-----cccc----c------------------
Confidence 49999999999999999999999 99999999863 4443210 0000 0
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
..+. .-.+....+.+.+.+.+.+.|++++ .+.|+++..+ +....|.+.+
T Consensus 50 --------~~pg-----------~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~--~~~~~V~~~~--------- 98 (555)
T TIGR03143 50 --------NYPG-----------ILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFD--GDIKTIKTAR--------- 98 (555)
T ss_pred --------cCCC-----------CcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEec--CCEEEEEecC---------
Confidence 0010 0012344677888888888899985 6678887653 3334455422
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.++.++.||+|+|++..
T Consensus 99 -------g~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 99 -------GDYKTLAVLIATGASPR 115 (555)
T ss_pred -------CEEEEeEEEECCCCccC
Confidence 25889999999998754
No 166
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.89 E-value=5.8e-08 Score=97.32 Aligned_cols=81 Identities=14% Similarity=0.267 Sum_probs=61.0
Q ss_pred cEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14496 125 NYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 125 ~~~i~r~~l~~~L~~~a~~~-gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
+.-|+-+.|.+.|.+.+.+. |++++++++|+++...+++. +.|.+.+. .+|+ ..+++|++|++..|..
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~---~~~~-------~~~v~a~FVfvGAGG~ 243 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDL---KTGE-------KREVRAKFVFVGAGGG 243 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEec---CCCC-------eEEEECCEEEECCchH
Confidence 55688899999999999886 99999999999999875653 56666431 2232 2589999999999988
Q ss_pred chhhHHHHHHcCCCCC
Q psy14496 204 GHLSKQIIKKFNLDNK 219 (561)
Q Consensus 204 s~~~~~l~~~~g~~~~ 219 (561)
|.. |+.+.|+++.
T Consensus 244 aL~---LLqksgi~e~ 256 (488)
T PF06039_consen 244 ALP---LLQKSGIPEG 256 (488)
T ss_pred hHH---HHHHcCChhh
Confidence 872 3444677653
No 167
>KOG2844|consensus
Probab=98.88 E-value=7.4e-08 Score=99.23 Aligned_cols=82 Identities=11% Similarity=0.198 Sum_probs=63.2
Q ss_pred ecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEcc
Q psy14496 121 KNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAE 200 (561)
Q Consensus 121 ~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~Ad 200 (561)
..++..+++...+++.|+..|.+.|+.|+.+..|+++... .++.++|+|.- ..+++..||.|+
T Consensus 177 y~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~----------------G~iet~~~VNaa 239 (856)
T KOG2844|consen 177 YSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPH----------------GSIETECVVNAA 239 (856)
T ss_pred ecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccC----------------cceecceEEech
Confidence 3455778999999999999999999999999999999765 44556888843 379999999999
Q ss_pred CCCchhhHHHHHHcCCCCCCCC
Q psy14496 201 GSRGHLSKQIIKKFNLDNKKDP 222 (561)
Q Consensus 201 G~~s~~~~~l~~~~g~~~~~~~ 222 (561)
|.+. +.+....+.+.+..|
T Consensus 240 GvWA---r~Vg~m~gvkvPL~p 258 (856)
T KOG2844|consen 240 GVWA---REVGAMAGVKVPLVP 258 (856)
T ss_pred hHHH---HHhhhhcCCccccee
Confidence 9765 444434555554444
No 168
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.87 E-value=1.9e-08 Score=107.70 Aligned_cols=167 Identities=19% Similarity=0.202 Sum_probs=93.6
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-ee-ccee---Ch-hhHHhhccccc-cCC--
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LS-GAII---DP-RSIFELFPKEK-LNK-- 89 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~-G~~~---~~-~~l~~l~~~~~-~~~-- 89 (561)
.+.++||||||+|.|||+||+.++ . |.+|+|+||.+..++.. .+ |++. .+ ...+..+.++. .+.
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-~------G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~ 78 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-S------HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGL 78 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-c------CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCC
Confidence 356799999999999999999984 6 89999999998766542 22 3221 11 11122222111 000
Q ss_pred ----cccc--ccchhhhhhhcCCCCcccCCC----CC-Cceeec-CCcEEe---eHHHHHHHHHHHHHH-CCCEEEcCce
Q psy14496 90 ----LFNT--PVIEERFLFLSSKKSYKIPSW----IL-PICFKN-HGNYII---SLSDLVRWMGKKAEN-MGIDIFSGFS 153 (561)
Q Consensus 90 ----~~~~--~~~~~~~~~~~~~~~~~~~~~----~~-p~~~~~-~~~~~i---~r~~l~~~L~~~a~~-~gv~i~~g~~ 153 (561)
.... .-..+.+.|+... ++.+... .. +...+. ...+.. .-..+...|.+.+.+ .|++++.++.
T Consensus 79 ~d~~lv~~~~~~s~~~i~wL~~~-Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~ 157 (553)
T PRK07395 79 CDPEAVRFLVEQAPEAIASLVEM-GVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQAL 157 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc-CCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcC
Confidence 0000 0112333444331 1111100 00 000000 001111 124677888888865 5999999999
Q ss_pred EeEEEEcC-CCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 154 ASEILYDS-KNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 154 v~~i~~~~-~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++++..++ +++++||.+.+ +|.. ..+.|+.||+|+|..+.
T Consensus 158 v~~Li~~~~~g~v~Gv~~~~-----~g~~-------~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 158 ALSLWLEPETGRCQGISLLY-----QGQI-------TWLRAGAVILATGGGGQ 198 (553)
T ss_pred hhhheecCCCCEEEEEEEEE-----CCeE-------EEEEcCEEEEcCCCCcc
Confidence 99998753 37888987632 2221 25799999999998654
No 169
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.87 E-value=5.9e-09 Score=117.46 Aligned_cols=41 Identities=32% Similarity=0.489 Sum_probs=37.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
...+|+|||||||||++|+.|++. |++|+|||+.+.+|+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~------G~~VtVfE~~~~~GG~l 345 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE------GFPVTVFEAFHDLGGVL 345 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCCCCceE
Confidence 468999999999999999999999 99999999998887643
No 170
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.86 E-value=2.4e-08 Score=105.63 Aligned_cols=43 Identities=28% Similarity=0.629 Sum_probs=38.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
+..|||+||||||||+++|+.|++. |++|+|||+.+.+|+...
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~------G~~v~liE~~~~~GG~~~ 45 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKL------GKRVAVIERYRNVGGGCT 45 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC------CCEEEEEecccccccccc
Confidence 3469999999999999999999999 999999999877777543
No 171
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.86 E-value=2.3e-08 Score=108.30 Aligned_cols=165 Identities=19% Similarity=0.209 Sum_probs=89.4
Q ss_pred EEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCC-C-ceee-cce---eC----hhhHHhhccccc-cCC----
Q psy14496 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG-A-HILS-GAI---ID----PRSIFELFPKEK-LNK---- 89 (561)
Q Consensus 25 VvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g-~-~~~~-G~~---~~----~~~l~~l~~~~~-~~~---- 89 (561)
|+|||+|+|||+||+.+++. |.+|+|+||.+.++ + ...+ |++ .+ ....+..+.++. .+.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~------G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d 74 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL------GYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRAR 74 (603)
T ss_pred CEEECccHHHHHHHHHHHHc------CCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCC
Confidence 79999999999999999999 99999999988442 2 2222 221 11 011111121111 000
Q ss_pred --cccccc--chhhhhhhcCCCCcccCCC----CCCceeecCC---cEE---eeHHHHHHHHHHHHHH----CCCEEEcC
Q psy14496 90 --LFNTPV--IEERFLFLSSKKSYKIPSW----ILPICFKNHG---NYI---ISLSDLVRWMGKKAEN----MGIDIFSG 151 (561)
Q Consensus 90 --~~~~~~--~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~---~~~---i~r~~l~~~L~~~a~~----~gv~i~~g 151 (561)
...... ..+.+.|+...+ +.+... ........+. .+. ..-..+...|.+.+.+ .||+++++
T Consensus 75 ~~lv~~l~~~s~~~i~~L~~~G-v~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~ 153 (603)
T TIGR01811 75 ESPVKRLAVASPEIIDLMDAMG-VPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEG 153 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeC
Confidence 011111 123444554321 111100 0000000000 000 0123455556555543 48999999
Q ss_pred ceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 152 FSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 152 ~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+.++++..+++++++||.+.+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 154 t~v~~Li~dd~grV~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 154 WEMLDIIVVDGNRARGIIARNL---VTGEI-------ETHSADAVILATGGYGNV 198 (603)
T ss_pred cEEEEEEEcCCCEEEEEEEEEC---CCCcE-------EEEEcCEEEECCCCCcCc
Confidence 9999998765678999987431 12221 368999999999987653
No 172
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.85 E-value=9.2e-07 Score=93.39 Aligned_cols=64 Identities=16% Similarity=0.031 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
..+.+.|.+.+++.|++|+.+++|++|..++++++++|.+.+. +|+ .-.++.+|.||.|...+.
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~----~~~------~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADG----EGQ------RRFEVTADAYVSAMPVDI 276 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecC----CCC------ceeEEECCEEEEcCCHHH
Confidence 3567778888878899999999999998766777888887431 010 001689999999987643
No 173
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.84 E-value=3e-08 Score=106.28 Aligned_cols=169 Identities=21% Similarity=0.270 Sum_probs=94.5
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-ee-cce---eCh-hhHHhhccccc-cCC---
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LS-GAI---IDP-RSIFELFPKEK-LNK--- 89 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~-G~~---~~~-~~l~~l~~~~~-~~~--- 89 (561)
++++||||||+|+|||++|+.+++ +.+|+|+||....++.. .+ |++ .++ ...+..+.+.. .+.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~-------~~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~ 78 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAE-------HRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLC 78 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHH-------CCCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCC
Confidence 467999999999999999999975 36999999998766532 22 222 111 11111111111 000
Q ss_pred ---cccc--ccchhhhhhhcCCCCcccCCC-------CC-CceeecCC-cEEe-----eHHHHHHHHHHHHHH-CCCEEE
Q psy14496 90 ---LFNT--PVIEERFLFLSSKKSYKIPSW-------IL-PICFKNHG-NYII-----SLSDLVRWMGKKAEN-MGIDIF 149 (561)
Q Consensus 90 ---~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~-p~~~~~~~-~~~i-----~r~~l~~~L~~~a~~-~gv~i~ 149 (561)
.... ......+.|+...+ +.+... .+ +.....+. ...+ .-..+.+.|.+.+.+ .||+++
T Consensus 79 d~~~v~~~~~~~~~~i~~L~~~G-v~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~ 157 (536)
T PRK09077 79 DEDAVRFIAENAREAVQWLIDQG-VPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVL 157 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 0000 01122344443321 111100 00 00000000 1111 124678888888876 489999
Q ss_pred cCceEeEEEEcC-----CCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 150 SGFSASEILYDS-----KNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 150 ~g~~v~~i~~~~-----~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
.++.++++..++ +++++||...+. .+|+. ..+.++.||+|+|..+.+
T Consensus 158 ~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 158 ERHNAIDLITSDKLGLPGRRVVGAYVLNR---NKERV-------ETIRAKFVVLATGGASKV 209 (536)
T ss_pred eeEEeeeeeecccccCCCCEEEEEEEEEC---CCCcE-------EEEecCeEEECCCCCCCC
Confidence 999999998643 378888876421 12221 368999999999998864
No 174
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.84 E-value=3.4e-08 Score=104.37 Aligned_cols=51 Identities=33% Similarity=0.562 Sum_probs=40.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
.+|||+||||||||+++|..|++. |++|+|+|+.+..|+....-+.+..+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~~~~GG~c~n~gciP~K~ 53 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL------GLETVCVERYSTLGGVCLNVGCIPSKA 53 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCcccccccCCCcccHHH
Confidence 369999999999999999999999 999999999876776544333333333
No 175
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.84 E-value=4.7e-08 Score=113.51 Aligned_cols=173 Identities=21% Similarity=0.247 Sum_probs=97.5
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-eccee-Ch--hh---------HHhhccc-
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAII-DP--RS---------IFELFPK- 84 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~-~~--~~---------l~~l~~~- 84 (561)
++.++||||||+|.|||+||+.+++. |.+|+|+||.+..|+... +++.+ .. +. .+.+...
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~------Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~ 479 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASC------GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDT 479 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHH
Confidence 46789999999999999999999999 999999999988776532 22211 10 00 0000000
Q ss_pred cccC-------Ccccc--ccchhhhhhhcCCCCcccCC------CCCCceeecC---CcEEee-HHHHHHHHHHHHHH--
Q psy14496 85 EKLN-------KLFNT--PVIEERFLFLSSKKSYKIPS------WILPICFKNH---GNYIIS-LSDLVRWMGKKAEN-- 143 (561)
Q Consensus 85 ~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~p~~~~~~---~~~~i~-r~~l~~~L~~~a~~-- 143 (561)
+... ..+.. ....+.+.|+.+.+ +.+.. ...+...... .+.... -..+.+.|.+.+++
T Consensus 480 ~~~~~~~~~d~~lv~~~~~~s~e~idwL~~~G-v~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~ 558 (1167)
T PTZ00306 480 HLSGKGGHCDPGLVKTLSVKSADAISWLSSLG-VPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKL 558 (1167)
T ss_pred HHhccCCCCCHHHHHHHHHhhHHHHHHHHHcC-CCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhc
Confidence 0000 00000 11223445554321 11110 0001100000 000001 23466677777654
Q ss_pred -CCCEEEcCceEeEEEEcCC----C----CEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 144 -MGIDIFSGFSASEILYDSK----N----NVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 144 -~gv~i~~g~~v~~i~~~~~----g----~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
.|++|+++++++++..+++ | +|+||...+.. ..+|+. ..+.|+.||+|+|..+..
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~-~~~g~~-------~~i~AkaVILATGGf~~N 622 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS-DASGQV-------MDLLADAVILATGGFSND 622 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc-cCCCcE-------EEEEeceEEEecCCcccC
Confidence 4999999999999997642 2 78999874310 013321 468999999999998874
No 176
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.84 E-value=2.1e-08 Score=107.85 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=90.2
Q ss_pred cEEEECchhHHHHHHHHHH----hccccCCCCCcEEEEcCCCCCCCceeecce--eChh--------hHHhhccccc-cC
Q psy14496 24 DVIIVGGGPSGLSAAIRLK----QLAIKKNKEIKICVLEKGSELGAHILSGAI--IDPR--------SIFELFPKEK-LN 88 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La----~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~--~~~~--------~l~~l~~~~~-~~ 88 (561)
||||||||+|||+||+.++ +. |.+|+|+||....+....+++. ++.. ..+..+.... ..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~------G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~ 74 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK------GLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDL 74 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC------CCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhc
Confidence 8999999999999999998 67 9999999998764433222221 1110 0111111111 00
Q ss_pred Cc------ccc--ccchhhhhhhcCCCCcccCCCCCCceeecCCcEE--eeHHHHHHHHHHHHHHCCCEEEcCceEeEEE
Q psy14496 89 KL------FNT--PVIEERFLFLSSKKSYKIPSWILPICFKNHGNYI--ISLSDLVRWMGKKAENMGIDIFSGFSASEIL 158 (561)
Q Consensus 89 ~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~ 158 (561)
.. ... ....+.+.|+... ++.+....-.......+.+. ..-..+.+.+...+.+.+++++.++.++++.
T Consensus 75 ~gl~d~~lV~~lv~~s~~~i~~L~~~-Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll 153 (614)
T TIGR02061 75 MGLVREDLIFDMARHVDDSVHLFEEW-GLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLL 153 (614)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHc-CCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEE
Confidence 00 000 1112344555431 11111000000000000000 0123455566666666778999999999998
Q ss_pred EcCC--CCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 159 YDSK--NNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 159 ~~~~--g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.+++ |+++||...+. .+|+. ..+.|+.||.|+|..+.
T Consensus 154 ~d~~~~GrV~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 154 LDKNTPNRIAGAVGFNV---RANEV-------HVFKAKTVIVAAGGAVN 192 (614)
T ss_pred ecCCCCCeEEEEEEEEe---CCCcE-------EEEECCEEEECCCcccc
Confidence 7543 68999876321 22321 36899999999998864
No 177
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.83 E-value=1.3e-06 Score=92.48 Aligned_cols=42 Identities=33% Similarity=0.563 Sum_probs=37.6
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCC--CCcEEEEcCCCCCCCcee
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNK--EIKICVLEKGSELGAHIL 68 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~--G~~V~ViEk~~~~g~~~~ 68 (561)
.||+|||||+|||++|+.|++. .| |++|+|+|+++.+|+.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~----~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE----IPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc----CCCCCCcEEEEEcCCcCcceEE
Confidence 6899999999999999999987 34 799999999999988753
No 178
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.83 E-value=8.7e-07 Score=93.86 Aligned_cols=45 Identities=33% Similarity=0.597 Sum_probs=36.3
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
+|+|||||+|||++|+.|++.....+.|++|+|+|+++.+|+.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 699999999999999999986100011489999999999998754
No 179
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.83 E-value=3.3e-08 Score=105.19 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=92.0
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeC-----hhhHHhhccccc-cCCc---
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIID-----PRSIFELFPKEK-LNKL--- 90 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~-----~~~l~~l~~~~~-~~~~--- 90 (561)
.++||+|||+|.|||++|+.++ . |.+|+|+||.+..++... +++.+. ....+..+.+.. .+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~-~------g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d 74 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELC-H------EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNN 74 (510)
T ss_pred CccCEEEECccHHHHHHHHHhh-c------CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCC
Confidence 3689999999999999999984 4 789999999987665431 222111 112222222211 0000
Q ss_pred ---ccccc--chhhhhhhcCCCCcccCCC-----CCCceeecCCcEEe------eHHHHHHHHHHHHHHCCCEEEcCceE
Q psy14496 91 ---FNTPV--IEERFLFLSSKKSYKIPSW-----ILPICFKNHGNYII------SLSDLVRWMGKKAENMGIDIFSGFSA 154 (561)
Q Consensus 91 ---~~~~~--~~~~~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~i------~r~~l~~~L~~~a~~~gv~i~~g~~v 154 (561)
....+ ....+.|+... ++.++.. .......+.....+ .-..+.+.|.+.+. .||+++.++.+
T Consensus 75 ~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v 152 (510)
T PRK08071 75 ERAVRYLVEEGPKEIQELIEN-GMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMV 152 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEh
Confidence 00000 12233333321 1111100 00000000000111 12357788888775 69999999999
Q ss_pred eEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 155 SEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 155 ~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+++..+ ++++.+|.+.+ .+|+. ..++|+.||+|+|..+.
T Consensus 153 ~~Li~~-~g~v~Gv~~~~----~~g~~-------~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 153 IDLIIE-NGRCIGVLTKD----SEGKL-------KRYYADYVVLASGGCGG 191 (510)
T ss_pred hheeec-CCEEEEEEEEE----CCCcE-------EEEEcCeEEEecCCCcc
Confidence 999764 67888887643 12221 36899999999998875
No 180
>KOG2853|consensus
Probab=98.83 E-value=5.6e-07 Score=85.70 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=48.1
Q ss_pred EeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccccc--ccCCc--eecccc--cCeEEecCEEEEcc
Q psy14496 127 IISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGI--NKEGI--IKKNFQ--LGMELYAKYTLFAE 200 (561)
Q Consensus 127 ~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~--~~~g~--~~~~f~--~g~~i~ad~vV~Ad 200 (561)
.++...|...+.+.+...|+.+..| .|++++.+. .+.+.+.++++.. ...+. ..+... -..+++++++|.|.
T Consensus 239 wfdpw~LLs~~rrk~~~lGv~f~~G-eV~~Fef~s-qr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aA 316 (509)
T KOG2853|consen 239 WFDPWALLSGIRRKAITLGVQFVKG-EVVGFEFES-QRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAA 316 (509)
T ss_pred ccCHHHHHHHHHHHhhhhcceEecc-eEEEEEEec-ccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEecc
Confidence 4778899999999999999999766 677777642 2223333333200 00010 001111 12578999999999
Q ss_pred CCCch
Q psy14496 201 GSRGH 205 (561)
Q Consensus 201 G~~s~ 205 (561)
|++|-
T Consensus 317 Ga~s~ 321 (509)
T KOG2853|consen 317 GAWSG 321 (509)
T ss_pred CccHH
Confidence 99987
No 181
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.83 E-value=3.2e-08 Score=103.89 Aligned_cols=41 Identities=29% Similarity=0.597 Sum_probs=36.1
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~ 69 (561)
+|||+||||||||+++|+.|++. |++|+|+||.. +|+....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~~~-~GG~c~~ 42 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH------GAKALLVEAKK-LGGTCVN 42 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC------CCcEEEecccc-cccceec
Confidence 59999999999999999999999 99999999964 6665443
No 182
>COG1146 Ferredoxin [Energy production and conversion]
Probab=98.83 E-value=2.9e-09 Score=79.73 Aligned_cols=62 Identities=21% Similarity=0.396 Sum_probs=50.6
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCCC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPEG 552 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g 552 (561)
++|++.|.. ++.|+.+||.+++.+..+. ++..+.+|.+.|++||.|...||.+||.+.....
T Consensus 4 ~Id~~~C~~------c~~C~~~CP~~~~~~~~~~-~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~~~~ 65 (68)
T COG1146 4 VIDYDKCIG------CGICVEVCPAGVFDLGEDE-GGKPVVARPEECIDCGLCELACPVGAIKVDILRP 65 (68)
T ss_pred EECchhcCC------CChheeccChhhEEecccc-CcceeEeccccCccchhhhhhCCcceEEEecccc
Confidence 357788877 5779999999999986532 2357999999999999999999999998755443
No 183
>PRK14727 putative mercuric reductase; Provisional
Probab=98.82 E-value=5.8e-08 Score=102.87 Aligned_cols=63 Identities=17% Similarity=0.350 Sum_probs=49.2
Q ss_pred cccccCCCCCCCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChh
Q psy14496 8 NHSLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPR 76 (561)
Q Consensus 8 ~~~~~~~~~~~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~ 76 (561)
|..-++..+.+.++++||+||||||||+++|+.|++. |.+|+|+|+...+|+.....+.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~dvvvIG~G~aG~~~a~~~~~~------g~~v~~ie~~~~~GG~c~n~GciPsk 64 (479)
T PRK14727 2 NAQGSSNCMTRSKLQLHVAIIGSGSAAFAAAIKAAEH------GARVTIIEGADVIGGCCVNVGCVPSK 64 (479)
T ss_pred CCCCCccccccCCCCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEEccCcceeEeccccccccH
Confidence 3344445566778899999999999999999999999 99999999987777765544333333
No 184
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.82 E-value=7.1e-08 Score=103.84 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecC-EEEEccCCCchh
Q psy14496 132 DLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAK-YTLFAEGSRGHL 206 (561)
Q Consensus 132 ~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad-~vV~AdG~~s~~ 206 (561)
.+...|.+.+++.|++++++++++++..+ ++++++|.... +|+ ...+.|+ .||+|+|..+.-
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-----~g~-------~~~i~A~~~VIlAtGG~~~n 271 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-----SGE-------PQLIRARRGVILASGGFEHN 271 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-----CCc-------EEEEEeceeEEEccCCcCcC
Confidence 35666777778889999999999999875 67888887632 221 1368886 699999987773
No 185
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.81 E-value=5.6e-08 Score=102.97 Aligned_cols=50 Identities=46% Similarity=0.799 Sum_probs=40.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
..|||+||||||||+++|+.|+++ |++|+|+|+. .+|+....-+.+..+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~-~~GG~c~~~gciPsk~ 52 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL------GLKTALVEKG-KLGGTCLHKGCIPSKA 52 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCeEEEEEcc-CCCcceEcCCcCchHH
Confidence 369999999999999999999999 9999999986 5676654433443333
No 186
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.78 E-value=1.1e-06 Score=92.75 Aligned_cols=38 Identities=34% Similarity=0.528 Sum_probs=35.5
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+|+|||||++||++|+.|++. |++|+|+|+.+.+|+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~------G~~v~v~E~~~~~GG~~ 38 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA------GHEVDIYESRSFIGGKV 38 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEEecCCCCcee
Confidence 589999999999999999999 99999999999988754
No 187
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.78 E-value=2.3e-08 Score=92.37 Aligned_cols=39 Identities=36% Similarity=0.619 Sum_probs=36.0
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
-+|+|||+|||||+||+.|+.+ |++|+||||+.-.|+++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~a------G~~vtV~eKg~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREA------GREVTVFEKGRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhc------CcEEEEEEcCCCcccch
Confidence 3699999999999999999999 99999999999888764
No 188
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.77 E-value=2.1e-09 Score=85.74 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=42.6
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCCC
Q psy14496 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPEG 552 (561)
Q Consensus 487 ~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g 552 (561)
+..|..|. +.+|+.+||+++|..+++ . ..+.+|+++|++|+.|..+||+++|.|....+
T Consensus 6 ~~~C~hC~----~ppC~~~CP~~Ai~~~~~-~--G~V~id~~~CigC~~C~~aCP~~ai~~~~~~~ 64 (98)
T PF13247_consen 6 PVQCRHCE----DPPCVEACPTGAIYKDPE-D--GIVVIDEDKCIGCGYCVEACPYGAIRFDPDTG 64 (98)
T ss_dssp EEC---BS----S-HHHHHCTTTSEEEETT-T--S-EEE-TTTCCTHHHHHHH-TTS-EEEETTTT
T ss_pred CCcCcCcC----CCchhhhCCccceEEEcC-C--CeEEechhhccCchhhhhhhccCcceeecccc
Confidence 45687766 689999999999887652 2 36899999999999999999999999976544
No 189
>PRK06370 mercuric reductase; Validated
Probab=98.77 E-value=7.3e-08 Score=101.89 Aligned_cols=51 Identities=27% Similarity=0.597 Sum_probs=39.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhH
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l 78 (561)
.+|||+||||||||+++|+.|+++ |++|+|+|+.. .|+....-+.+..+.+
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~~-~GG~c~~~gciPsk~l 54 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGL------GMKVALIERGL-LGGTCVNTGCVPTKTL 54 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCeEEEEecCc-cCCceeccccCcHHHH
Confidence 369999999999999999999999 99999999864 5554443344444443
No 190
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.77 E-value=6.3e-08 Score=102.23 Aligned_cols=51 Identities=41% Similarity=0.716 Sum_probs=40.7
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
.+|||+||||||||+++|+.|++. |++|+|+|+...+|+....-+.+..+.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~------G~~V~liE~~~~~GG~c~~~gciPsK~ 52 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQL------GLKVACVEGRSTLGGTCLNVGCMPSKA 52 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCceeeeeccCcccccHH
Confidence 359999999999999999999999 999999998666777644333333333
No 191
>KOG2852|consensus
Probab=98.76 E-value=3.5e-07 Score=85.16 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=92.3
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeC----hh---hH--------Hhhc
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIID----PR---SI--------FELF 82 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~----~~---~l--------~~l~ 82 (561)
+.....|+|||||+.|..+|+.|++..--+..-+.|+|||+....++.. ..|+.+. +. .| +++-
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Ls 86 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELS 86 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHH
Confidence 3445899999999999999999999821111128999999988766532 1222221 10 00 1111
Q ss_pred c------ccccC--Cccccccc---------hhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-
Q psy14496 83 P------KEKLN--KLFNTPVI---------EERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM- 144 (561)
Q Consensus 83 ~------~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~- 144 (561)
. .|... .......+ .+...|+....... ...-.......+++...|++.+++.+++.
T Consensus 87 deydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~-----~ssiG~t~ttaqvhP~lFc~~i~sea~k~~ 161 (380)
T KOG2852|consen 87 DEYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQK-----CSSIGSTNTTAQVHPYLFCHFILSEAEKRG 161 (380)
T ss_pred HhhcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhh-----heeccCCCccceeCHHHHHHHHHHHHHhhc
Confidence 1 12100 00000001 11222222100000 00001112366899999999999999885
Q ss_pred CCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 145 GIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 145 gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
||++.+|. |.++. ++.+++..|.... ..+ .......+.+|.+.|-++.
T Consensus 162 ~V~lv~Gk-v~ev~-dEk~r~n~v~~ae----~~~-------ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 162 GVKLVFGK-VKEVS-DEKHRINSVPKAE----AED-------TIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred CeEEEEee-eEEee-cccccccccchhh----hcC-------ceEEeeeeEEEEecCCCch
Confidence 59999984 66664 3455554443321 001 1346788999999998765
No 192
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.76 E-value=1.2e-07 Score=99.40 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=91.6
Q ss_pred EECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC--CCCceeec-ce-eC----hh------hHHhhcccccc--CC-
Q psy14496 27 IVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE--LGAHILSG-AI-ID----PR------SIFELFPKEKL--NK- 89 (561)
Q Consensus 27 IVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~--~g~~~~~G-~~-~~----~~------~l~~l~~~~~~--~~- 89 (561)
|||+|+|||++|+.+++. |.+|+||||.+. .|+....+ .. .. .. ..++++..+.. ..
T Consensus 1 VVG~G~AGl~AA~~Aa~~------Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA------GASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGR 74 (432)
T ss_pred CCcccHHHHHHHHHHHhC------CCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCC
Confidence 799999999999999999 999999999875 23322111 10 00 00 01111122210 00
Q ss_pred ---cccc---ccchhhhhhhcCCCCcccCCC---CCCceeecCCcEE-eeHHHHHHHHHHHHHHCCCEEEcCceEeEEEE
Q psy14496 90 ---LFNT---PVIEERFLFLSSKKSYKIPSW---ILPICFKNHGNYI-ISLSDLVRWMGKKAENMGIDIFSGFSASEILY 159 (561)
Q Consensus 90 ---~~~~---~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~-i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~ 159 (561)
.+.. ....+.+.|+.+.+ +.+... ..+. .....+. -.-..+.+.|.+.+++.|++|+++++|+++..
T Consensus 75 ~d~~l~~~~~~~s~~~i~wl~~~G-v~f~~~~~g~~~~--~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~ 151 (432)
T TIGR02485 75 TNESLSRLGIGRGSRDLRWAFAHG-VHLQPPAAGNLPY--SRRTAFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPP 151 (432)
T ss_pred CCHHHHHHHHhcchhHHHHHHhCC-ceeeecCCCCccc--cCceeeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEe
Confidence 0000 01123345554322 111100 0000 0000010 01246888999999999999999999999987
Q ss_pred cC-CCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhH
Q psy14496 160 DS-KNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSK 208 (561)
Q Consensus 160 ~~-~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~ 208 (561)
++ ++.+++|.+.+ ++.++++|.||+|+|..+..+.
T Consensus 152 ~~~~g~v~gv~~~~--------------~~~~i~ak~VIlAtGG~~~n~~ 187 (432)
T TIGR02485 152 EAFDGAHDGPLTTV--------------GTHRITTQALVLAAGGLGANRD 187 (432)
T ss_pred cCCCCeEEEEEEcC--------------CcEEEEcCEEEEcCCCcccCHH
Confidence 53 56788877531 1247899999999998887543
No 193
>PTZ00058 glutathione reductase; Provisional
Probab=98.76 E-value=8.6e-08 Score=102.39 Aligned_cols=53 Identities=28% Similarity=0.557 Sum_probs=41.5
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
...++|||+||||||||+++|+.+++. |.+|+|+||. ..|+...+-+.+..+.
T Consensus 44 ~~~~~yDvvVIG~G~aG~~aA~~aa~~------G~~ValIEk~-~~GGtCln~GCiPsK~ 96 (561)
T PTZ00058 44 KPRMVYDLIVIGGGSGGMAAARRAARN------KAKVALVEKD-YLGGTCVNVGCVPKKI 96 (561)
T ss_pred CCCccccEEEECcCHHHHHHHHHHHHc------CCeEEEEecc-cccccccccCCCCCch
Confidence 345789999999999999999999999 9999999986 4666544333333333
No 194
>PRK06116 glutathione reductase; Validated
Probab=98.76 E-value=6.1e-08 Score=102.11 Aligned_cols=39 Identities=33% Similarity=0.710 Sum_probs=35.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+|||+||||||||+++|+.|+++ |++|+|+|+. ..|+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~------G~~V~liE~~-~~GG~c 42 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMY------GAKVALIEAK-RLGGTC 42 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC------CCeEEEEecc-chhhhh
Confidence 69999999999999999999999 9999999986 455543
No 195
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.74 E-value=7.9e-08 Score=100.91 Aligned_cols=40 Identities=28% Similarity=0.559 Sum_probs=35.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC-CCCc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE-LGAH 66 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~-~g~~ 66 (561)
++|||+||||||||+++|..|++. |++|+||||.+. .|+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~------g~~V~liE~~~~~~GG~ 42 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASA------GKKVALVEESKAMYGGT 42 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC------CCEEEEEecCCccccee
Confidence 469999999999999999999999 999999999864 4554
No 196
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.74 E-value=3.6e-08 Score=104.97 Aligned_cols=166 Identities=20% Similarity=0.188 Sum_probs=91.9
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC-CCCc-ee-eccee---Ch-hhHHhhccccc-cCC
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE-LGAH-IL-SGAII---DP-RSIFELFPKEK-LNK 89 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~-~g~~-~~-~G~~~---~~-~~l~~l~~~~~-~~~ 89 (561)
+.+.++||+|||+|.|||+||+.++ +.+|+|+||.+. .++. .. .|++. .+ ...+..+.++. .+.
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAl~Aa--------~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~ 76 (513)
T PRK07512 5 LRILTGRPVIVGGGLAGLMAALKLA--------PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGA 76 (513)
T ss_pred ccCCcCCEEEECchHHHHHHHHHhC--------cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhC
Confidence 3466899999999999999999883 459999999986 3332 22 22221 11 11111111111 000
Q ss_pred ------cccc--ccchhhhhhhcCCCCcccCCC----CCCceeecCC---cEEe----eHHHHHHHHHHHHHHC-CCEEE
Q psy14496 90 ------LFNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNHG---NYII----SLSDLVRWMGKKAENM-GIDIF 149 (561)
Q Consensus 90 ------~~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~---~~~i----~r~~l~~~L~~~a~~~-gv~i~ 149 (561)
.... ....+.+.|+...+ +.+... ........+. .+.. .-..+.+.|.+.+.+. ||+++
T Consensus 77 g~~d~~~v~~~~~~s~~~i~wL~~~G-v~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~ 155 (513)
T PRK07512 77 GLCDPAVAALITAEAPAAIEDLLRLG-VPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVL 155 (513)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhC-CccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0000 01123344443311 111100 0000000000 1111 1246888888888764 89999
Q ss_pred cCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 150 SGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 150 ~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.++.++++..+ ++++++|.+.+ ++. -..+.||.||+|+|..+.
T Consensus 156 ~~~~v~~Li~~-~g~v~Gv~~~~-----~~~-------~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 156 EGAEARRLLVD-DGAVAGVLAAT-----AGG-------PVVLPARAVVLATGGIGG 198 (513)
T ss_pred ECcChhheeec-CCEEEEEEEEe-----CCe-------EEEEECCEEEEcCCCCcC
Confidence 99999998764 67888887632 111 026899999999998764
No 197
>PRK14694 putative mercuric reductase; Provisional
Probab=98.74 E-value=1.7e-07 Score=99.22 Aligned_cols=51 Identities=16% Similarity=0.444 Sum_probs=40.4
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChh
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPR 76 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~ 76 (561)
....|||+||||||||+++|+.|++. |++|+|||+. .+|+...+-+.+..+
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~------g~~v~lie~~-~~GGtc~n~GciPsk 53 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATER------GARVTLIERG-TIGGTCVNIGCVPSK 53 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEEcc-ccccceecCCccccH
Confidence 45679999999999999999999999 9999999986 466654443333333
No 198
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.74 E-value=6e-08 Score=98.08 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=33.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g 64 (561)
..||+|||||+||+.+|+.|++. |++|+|+|+++...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~------Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR------GVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccC
Confidence 46999999999999999999999 99999999887653
No 199
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.73 E-value=8e-08 Score=100.95 Aligned_cols=41 Identities=22% Similarity=0.491 Sum_probs=36.0
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC-CCCce
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE-LGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~-~g~~~ 67 (561)
..|||+||||||||+++|+.|+++ |++|+|||+.+. .|+..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~------g~~V~lie~~~~~~GG~~ 43 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA------GWRVALIEQSNAMYGGTC 43 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC------CCeEEEEcCCCCccceeE
Confidence 369999999999999999999999 999999999763 55544
No 200
>PRK12831 putative oxidoreductase; Provisional
Probab=98.73 E-value=2.7e-08 Score=104.57 Aligned_cols=42 Identities=29% Similarity=0.478 Sum_probs=37.7
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
.....||+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~------G~~V~v~e~~~~~GG~ 178 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKM------GYDVTIFEALHEPGGV 178 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCCe
Confidence 34568999999999999999999999 9999999998887664
No 201
>PRK10262 thioredoxin reductase; Provisional
Probab=98.72 E-value=1.3e-07 Score=94.97 Aligned_cols=115 Identities=15% Similarity=0.231 Sum_probs=73.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
+..+||+|||||||||++|+.|+++ |++|+|||+. ..|+....... +.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~------g~~~~~ie~~-~~gg~~~~~~~---------~~---------------- 51 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARA------NLQPVLITGM-EKGGQLTTTTE---------VE---------------- 51 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHC------CCCeEEEEee-cCCCceecCce---------EC----------------
Confidence 4579999999999999999999999 9999999965 44443210000 00
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
.++.. ...+....+.+.+.+.+...+++++.+ .|+++... ++ .+.+...
T Consensus 52 ----------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~-~~-~~~v~~~-------- 100 (321)
T PRK10262 52 ----------NWPGD----------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQ-NR-PFRLTGD-------- 100 (321)
T ss_pred ----------CCCCC----------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEec-CC-eEEEEec--------
Confidence 00100 001233356677777777777877765 46666543 22 2333321
Q ss_pred ceecccccCeEEecCEEEEccCCCch
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
...+.+|.||+|+|.+..
T Consensus 101 --------~~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 101 --------SGEYTCDALIIATGASAR 118 (321)
T ss_pred --------CCEEEECEEEECCCCCCC
Confidence 126899999999998753
No 202
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.71 E-value=1.4e-07 Score=99.95 Aligned_cols=33 Identities=42% Similarity=0.836 Sum_probs=31.7
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcC
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk 59 (561)
.+|||+||||||||+++|+.|++. |.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~------g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL------GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC------CCeEEEEec
Confidence 369999999999999999999999 999999998
No 203
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.71 E-value=1.3e-07 Score=84.05 Aligned_cols=36 Identities=36% Similarity=0.595 Sum_probs=30.2
Q ss_pred EEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14496 26 IIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 26 vIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
+||||||+|++++..|.+.. ...+..+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCc
Confidence 69999999999999998884 3345789999999654
No 204
>PRK09897 hypothetical protein; Provisional
Probab=98.70 E-value=2e-07 Score=98.53 Aligned_cols=40 Identities=30% Similarity=0.556 Sum_probs=34.0
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
.+|+||||||+|+++|..|.+. ...++|+|||+...+|..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~----~~~l~V~lfEp~~~~G~G 41 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ----QTPLSISIFEQADEAGVG 41 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc----CCCCcEEEEecCCCCCcc
Confidence 4899999999999999999886 235799999998877643
No 205
>PLN02507 glutathione reductase
Probab=98.70 E-value=1.8e-07 Score=99.29 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=31.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcC
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk 59 (561)
.+|||+||||||||+++|+.|+++ |.+|+|+|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~------G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF------GAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC------CCeEEEEec
Confidence 469999999999999999999999 999999996
No 206
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.68 E-value=2.1e-08 Score=74.90 Aligned_cols=35 Identities=40% Similarity=0.634 Sum_probs=32.3
Q ss_pred EECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 27 IVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 27 IVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
|||||++||++|+.|++. |++|+|+|+.+.+|+..
T Consensus 1 IiGaG~sGl~aA~~L~~~------g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA------GYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHT------TSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHC------CCcEEEEecCcccCcce
Confidence 899999999999999999 99999999999998764
No 207
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.63 E-value=3.6e-07 Score=71.07 Aligned_cols=78 Identities=21% Similarity=0.366 Sum_probs=62.6
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhhh
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFL 103 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (561)
.|+|||||+.|+-+|..|++. |.+|+|+++.+.+.. .
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~~~~~-~------------------------------------ 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSDRLLP-G------------------------------------ 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSSSSST-T------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccchhhh-h------------------------------------
Confidence 489999999999999999999 999999999987631 0
Q ss_pred cCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14496 104 SSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 104 ~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
++ ..+.+.+.+.+++.||++++++.++++..++++ +. |++.
T Consensus 38 ------------~~-------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~ 78 (80)
T PF00070_consen 38 ------------FD-------------PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLE 78 (80)
T ss_dssp ------------SS-------------HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEE
T ss_pred ------------cC-------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEe
Confidence 00 035566777777889999999999999987666 55 7664
No 208
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.63 E-value=4.4e-08 Score=91.22 Aligned_cols=33 Identities=48% Similarity=0.871 Sum_probs=30.9
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
||+||||||||+++|+.|++. +++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~------~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP------GAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcC------CCeEEEEecccc
Confidence 799999999999999999998 999999988764
No 209
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.63 E-value=1.6e-07 Score=106.69 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=89.3
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee-c--ce---e-C-hhhHHhhccccc-cCC
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-G--AI---I-D-PRSIFELFPKEK-LNK 89 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~-G--~~---~-~-~~~l~~l~~~~~-~~~ 89 (561)
+++++||+|||||.|||++|+.+++. |.+|+|+||.....+.... | ++ . . ....+..+.+.. .+.
T Consensus 10 ~~~~~DVlVVG~G~AGl~AAl~Aa~~------G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~ 83 (897)
T PRK13800 10 LRLDCDVLVIGGGTAGTMAALTAAEH------GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRAND 83 (897)
T ss_pred ceeecCEEEECcCHHHHHHHHHHHHC------CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcC
Confidence 45789999999999999999999999 9999999998752211111 1 11 0 0 011111111111 000
Q ss_pred cc------cc--ccchhhhhhhcCCCCcccCCCC---C-CceeecCCcEEe---eHHHHHHHHHHHHHH----CCCEEEc
Q psy14496 90 LF------NT--PVIEERFLFLSSKKSYKIPSWI---L-PICFKNHGNYII---SLSDLVRWMGKKAEN----MGIDIFS 150 (561)
Q Consensus 90 ~~------~~--~~~~~~~~~~~~~~~~~~~~~~---~-p~~~~~~~~~~i---~r~~l~~~L~~~a~~----~gv~i~~ 150 (561)
.+ .. ......+.|+... ++.+.... + .......+.+.. .-..+.+.|.+.+.+ .+|.+..
T Consensus 84 gl~d~~~v~~~~~~a~~~i~~L~~~-Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~ 162 (897)
T PRK13800 84 GIVNQRTVYQTATRGFAMVQRLERY-GVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIEN 162 (897)
T ss_pred CCCCHHHHHHHHHhHHHHHHHHHHc-CCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEe
Confidence 00 00 0011234444331 11111000 0 000000001100 122445555555543 3688988
Q ss_pred CceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 151 GFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 151 g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
++.++++..+ +|+++||..-+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 163 ~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 163 RLMPVRVLTE-GGRAVGAAALNT---RTGEF-------VTVGAKAVILATGPCGRL 207 (897)
T ss_pred ceeeEEEEee-CCEEEEEEEEec---CCCcE-------EEEECCEEEECCCccccC
Confidence 8888888764 678888875321 22321 368999999999988754
No 210
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.63 E-value=8.9e-06 Score=83.40 Aligned_cols=41 Identities=32% Similarity=0.656 Sum_probs=36.4
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
.|+|||||+|||++|++|++. .|..+|+|||+.+..|+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~----~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA----GPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh----CCCCcEEEEecCCCCCceEE
Confidence 589999999999999999999 33499999999999988653
No 211
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.62 E-value=2e-07 Score=99.00 Aligned_cols=171 Identities=22% Similarity=0.288 Sum_probs=95.8
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee--cce---e-Chh-----hHHhhccc---
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS--GAI---I-DPR-----SIFELFPK--- 84 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~--G~~---~-~~~-----~l~~l~~~--- 84 (561)
...++||||||||.|||.+|+.++.. |++|+|+||....+++... |++ + +.. ..+..+.+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~------g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvk 76 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEA------GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVK 76 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhc------CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHh
Confidence 35679999999999999999999999 9999999999988776432 111 1 010 11111100
Q ss_pred ---cc-cCCccc--cccchhhhhhhcCCCCcccC---C----CCCCceeecCCcEEee--HHHHHHHHHHHHHH-CCCEE
Q psy14496 85 ---EK-LNKLFN--TPVIEERFLFLSSKKSYKIP---S----WILPICFKNHGNYIIS--LSDLVRWMGKKAEN-MGIDI 148 (561)
Q Consensus 85 ---~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~---~----~~~p~~~~~~~~~~i~--r~~l~~~L~~~a~~-~gv~i 148 (561)
|. ...... .......+.++..-+..... . ..+.....++..+.-. -..+...|.+++.+ .++++
T Consensus 77 g~d~l~dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~ 156 (562)
T COG1053 77 GGDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEI 156 (562)
T ss_pred ccCCcCCHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchh
Confidence 00 000000 00111223333221110000 0 0000000001111111 13578888888887 67789
Q ss_pred EcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 149 FSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 149 ~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+.+..++++..++++.+.+|..-+. .+|+. ..++++.||.|+|..+.
T Consensus 157 ~~~~~~~~l~~~~~~~v~Gvv~~~~---~~g~~-------~~~~akavilaTGG~g~ 203 (562)
T COG1053 157 FDEYFVLDLLVDDGGGVAGVVARDL---RTGEL-------YVFRAKAVILATGGAGR 203 (562)
T ss_pred hhhhhhhhheecCCCcEEEEEEEEe---cCCcE-------EEEecCcEEEccCCceE
Confidence 9999999998765555777765331 23332 46789999999998883
No 212
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.61 E-value=7.8e-08 Score=109.54 Aligned_cols=40 Identities=33% Similarity=0.435 Sum_probs=36.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~------G~~VtV~E~~~~~GG~ 468 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY------GVDVTVYEALHVVGGV 468 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCcce
Confidence 357999999999999999999999 9999999998887653
No 213
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.60 E-value=9.4e-08 Score=106.82 Aligned_cols=41 Identities=32% Similarity=0.441 Sum_probs=36.7
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
....+|+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~------G~~V~v~e~~~~~GG~ 469 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR------GYDVTVFEALHEIGGV 469 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCCCCCCe
Confidence 3467999999999999999999999 9999999998777654
No 214
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.60 E-value=2.3e-07 Score=95.85 Aligned_cols=54 Identities=41% Similarity=0.749 Sum_probs=44.8
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHH
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIF 79 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~ 79 (561)
+++||++||||||||.++|+.++++ |.+|+|+|+....|+.-++-+.+..++|.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~------G~kvalvE~~~~lGGtCln~GCIPsK~Ll 55 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL------GLKVALVEKGERLGGTCLNVGCIPSKALL 55 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC------CCCEEEEeecCCcCceEEeeCccccHHHH
Confidence 4689999999999999999999999 99999999997777765555555555543
No 215
>PRK13748 putative mercuric reductase; Provisional
Probab=98.60 E-value=6e-07 Score=97.47 Aligned_cols=49 Identities=16% Similarity=0.445 Sum_probs=39.3
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPR 76 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~ 76 (561)
.+|||+||||||||+++|+.|++. |.+|+|||+. .+|+....-+.+..+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~------G~~v~lie~~-~~GG~c~n~gciPsk 145 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ------GARVTLIERG-TIGGTCVNVGCVPSK 145 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecC-cceeeccccCccccH
Confidence 369999999999999999999999 9999999987 566654433333333
No 216
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.59 E-value=1.1e-07 Score=104.65 Aligned_cols=40 Identities=30% Similarity=0.546 Sum_probs=36.8
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~ 365 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGL 365 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCce
Confidence 467999999999999999999999 9999999999887764
No 217
>KOG2404|consensus
Probab=98.58 E-value=2.7e-07 Score=87.13 Aligned_cols=172 Identities=19% Similarity=0.308 Sum_probs=99.7
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee-cceeChhh--HH---------hhc-cc----cc
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-GAIIDPRS--IF---------ELF-PK----EK 86 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~-G~~~~~~~--l~---------~l~-~~----~~ 86 (561)
.|+|||+|.|||+++..|-.. |-.|+++|+....|+...- ...++... .+ ++| .+ -.
T Consensus 11 pvvVIGgGLAGLsasn~iin~------gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~sak 84 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK------GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAK 84 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc------CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcc
Confidence 699999999999999999888 7779999999988875321 11111100 00 000 00 00
Q ss_pred -cCCc--c--ccccchhhhhhhcCCCCcccC------CCCCCceeecC----CcEEeeHHHHHHHHHHHHH----H--CC
Q psy14496 87 -LNKL--F--NTPVIEERFLFLSSKKSYKIP------SWILPICFKNH----GNYIISLSDLVRWMGKKAE----N--MG 145 (561)
Q Consensus 87 -~~~~--~--~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~----~~~~i~r~~l~~~L~~~a~----~--~g 145 (561)
.+.+ + ........+.|+...-.+.++ ....|+..+.. .++ .+...|..+++ + .-
T Consensus 85 sk~~~eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgf-----ei~~~L~~~l~k~as~~pe~ 159 (477)
T KOG2404|consen 85 SKGVPELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGF-----EIVKALSTRLKKKASENPEL 159 (477)
T ss_pred cCCcHHHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCch-----HHHHHHHHHHHHhhhcChHH
Confidence 0000 0 011223455666553332221 11222211111 122 34444444433 2 23
Q ss_pred CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCC
Q psy14496 146 IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDN 218 (561)
Q Consensus 146 v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~ 218 (561)
++|..+++|++|+. ++|.|.+|..-| .+|+. ..+.++.||.|+|..+.--+.+++.++.+.
T Consensus 160 ~ki~~nskvv~il~-n~gkVsgVeymd----~sgek-------~~~~~~~VVlatGGf~ysd~~lLKey~pel 220 (477)
T KOG2404|consen 160 VKILLNSKVVDILR-NNGKVSGVEYMD----ASGEK-------SKIIGDAVVLATGGFGYSDKELLKEYGPEL 220 (477)
T ss_pred Hhhhhcceeeeeec-CCCeEEEEEEEc----CCCCc-------cceecCceEEecCCcCcChHHHHHHhChhh
Confidence 88999999999985 488999998754 34442 468899999999999875577777665443
No 218
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.58 E-value=1.4e-07 Score=99.07 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=37.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...++|+|||||||||++|..|++. |++|+|||+.+.+|+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~------G~~V~vie~~~~~GG~ 171 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA------GHSVTVFEALHKPGGV 171 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCcE
Confidence 3468999999999999999999999 9999999998877653
No 219
>PLN02546 glutathione reductase
Probab=98.58 E-value=2.3e-07 Score=99.19 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=31.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcC
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk 59 (561)
.+|||+||||||+|+.+|..|+++ |.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF------GASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCeEEEEec
Confidence 469999999999999999999999 999999996
No 220
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.57 E-value=3.1e-07 Score=97.21 Aligned_cols=41 Identities=49% Similarity=0.882 Sum_probs=36.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~ 69 (561)
.|||+||||||||+++|+.|++. |++|+|||+ +.+|+...+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~------G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL------GLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC------CCeEEEEec-CCCCCceee
Confidence 48999999999999999999999 999999999 667775443
No 221
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.57 E-value=5.9e-07 Score=95.02 Aligned_cols=41 Identities=44% Similarity=0.752 Sum_probs=36.0
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
++|||+||||||||+++|+.|++. |++|+|||+ ...|+...
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~------g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL------GKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC------CCeEEEEeC-Ccccccee
Confidence 569999999999999999999999 999999999 55666543
No 222
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.57 E-value=2.2e-07 Score=98.24 Aligned_cols=48 Identities=27% Similarity=0.626 Sum_probs=38.1
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
|||+||||||||+++|+.|+++ |++|+|+|+.+ .|+....-+.+..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~------g~~v~lie~~~-~GG~c~n~gciPsk~ 48 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL------GASVAMVERGP-LGGTCVNVGCVPSKM 48 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCc-ccCCeeeecEEccHH
Confidence 7999999999999999999999 99999999876 565543333333333
No 223
>KOG3923|consensus
Probab=98.56 E-value=3.4e-06 Score=79.26 Aligned_cols=293 Identities=9% Similarity=0.034 Sum_probs=140.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhc-cccCCCCCcEEEEcCCCCCCCce-eecceeChh----------------hHHhhc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQL-AIKKNKEIKICVLEKGSELGAHI-LSGAIIDPR----------------SIFELF 82 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~-~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~~~----------------~l~~l~ 82 (561)
+..+|+|||+|..||++|+.+.+. .+...|..+|+|++-+..+.... ...+++.|. +.+.+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~ 81 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYLA 81 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCcHHHHHHHHHHHHHHHH
Confidence 567899999999999999888774 23446778999998776553321 112222222 111111
Q ss_pred cccc-cCCc-----------ccc-ccchhhhhhhcC-------CCCcccCCCCCC-ceeecCCcEEeeHHHHHHHHHHHH
Q psy14496 83 PKEK-LNKL-----------FNT-PVIEERFLFLSS-------KKSYKIPSWILP-ICFKNHGNYIISLSDLVRWMGKKA 141 (561)
Q Consensus 83 ~~~~-~~~~-----------~~~-~~~~~~~~~~~~-------~~~~~~~~~~~p-~~~~~~~~~~i~r~~l~~~L~~~a 141 (561)
..|. ...+ +.. ....++..+..+ -....+..+..+ ........|...-..++.+|.+.+
T Consensus 82 ~l~rs~~a~~aGV~l~sg~~ls~~e~~~~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~l 161 (342)
T KOG3923|consen 82 HLARSEEAGEAGVCLVSGHILSDSESLDDQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKRL 161 (342)
T ss_pred HHhccccccccceEEeeeeeeccCCCchhhhhhHHhhhhhhhcCCHHHhcCCCCccccceeEEEeeccchhhhHHHHHHH
Confidence 1111 0000 000 000111111110 001111111122 001122366777889999999999
Q ss_pred HHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCC
Q psy14496 142 ENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKD 221 (561)
Q Consensus 142 ~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~~~~ 221 (561)
.+.|+++. ..+|+++++- ..-.+|+||.|+|..+. + +.-+....
T Consensus 162 ~e~Gvef~-~r~v~~l~E~----------------------------~~~~~DVivNCtGL~a~---~----L~gDd~~y 205 (342)
T KOG3923|consen 162 TENGVEFV-QRRVESLEEV----------------------------ARPEYDVIVNCTGLGAG---K----LAGDDDLY 205 (342)
T ss_pred HhcCcEEE-EeeeccHHHh----------------------------ccCCCcEEEECCccccc---c----ccCCccee
Confidence 99999884 3456555321 02578999999997765 2 21111111
Q ss_pred CccccceeEEE-EeeCCCccCCCcEEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChh
Q psy14496 222 PQTYSLGIKEL-WTINPKLHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPK 300 (561)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (561)
-++.. ..+ ....+.|... ..+...+++|. .+.+.+|-+...+..+......+..+-+...-.
T Consensus 206 ------PiRGqVl~V-----~ApWvkhf~~-----~D~~~ty~iP~-~~~V~lGg~~Q~g~w~~ei~~~D~~dIl~rc~a 268 (342)
T KOG3923|consen 206 ------PIRGQVLKV-----DAPWVKHFIY-----RDFSRTYIIPG-TESVTLGGTKQEGNWNLEITDEDRRDILERCCA 268 (342)
T ss_pred ------eccceEEEe-----eCCceeEEEE-----ecCCccEEecC-CceEEEccccccCcccCcCChhhHHHHHHHHHH
Confidence 11111 111 1222334321 11111367785 467777776655544555555444433322222
Q ss_pred HHHhhcCCeeeeecceeeccCCCccC---Cee-ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHh
Q psy14496 301 ICKILKGGKRISYGARTITTGGLQSL---PEF-IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKIC 371 (561)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~ 371 (561)
+.+-++..+.+.-.....|.-....+ ... ...+..+|=+=. ++|.|+.++...|.-+++.+...+.
T Consensus 269 L~P~l~~a~ii~E~vGlRP~Rk~vRlE~e~~~~~~k~~~VVHnYG-----HgG~G~Tl~wGtAlea~~Lv~~~l~ 338 (342)
T KOG3923|consen 269 LEPSLRHAEIIREWVGLRPGRKQVRLEAELRTRGGKRLTVVHNYG-----HGGNGFTLGWGTALEAAKLVLDALG 338 (342)
T ss_pred hCcccccceehhhhhcccCCCCceeeeeeeecCCCccceeEeecc-----CCCCceecccchHHHHHHHHHHHhh
Confidence 33333333333211111110000000 001 112333344433 5788888888888888887766643
No 224
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.56 E-value=8.1e-07 Score=101.85 Aligned_cols=40 Identities=30% Similarity=0.630 Sum_probs=36.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
..+||+|||||||||++|+.|++. |++|+|+|+.+.+|+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~------G~~V~liD~~~~~GG~ 201 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA------GARVILVDEQPEAGGS 201 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCCCCe
Confidence 468999999999999999999999 9999999999887663
No 225
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.56 E-value=2.4e-07 Score=96.79 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=39.0
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
......+|+|||||||||++|..|++. .+|++|+|||+.+.+++.+.
T Consensus 22 ~~~~~~~VaIVGaGPAGl~AA~~L~~~----~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 22 STSEPLHVCVVGSGPAGFYTADKLLKA----HDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHhh----CCCCeEEEEecCCCCcceEe
Confidence 344568999999999999999999873 12999999999998877543
No 226
>CHL00065 psaC photosystem I subunit VII
Probab=98.56 E-value=1.8e-08 Score=78.43 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=45.5
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeec---CceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEK---NKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~---~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
+++.+.|+. ++.|+.+||.+++++.+.. .+.....++.+.|+.|+.|..+||.+||+|++
T Consensus 5 ~~~~~~Ci~------Cg~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 67 (81)
T CHL00065 5 VKIYDTCIG------CTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred cCccccCCC------hhHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEE
Confidence 346678987 5679999999998875421 11112355779999999999999999999764
No 227
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.56 E-value=1.9e-07 Score=98.45 Aligned_cols=40 Identities=30% Similarity=0.561 Sum_probs=36.4
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~ 65 (561)
....+|+|||||||||++|+.|++. |++|+|||+.+.+|+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~------g~~V~lie~~~~~gG 177 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK------GYDVTIFEARDKAGG 177 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCc
Confidence 3468999999999999999999999 999999999987765
No 228
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.54 E-value=2.1e-07 Score=97.97 Aligned_cols=40 Identities=28% Similarity=0.567 Sum_probs=36.7
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+|||||||||++|..|++. |++|+|+|+.+.+|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~ 179 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGL 179 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCce
Confidence 568999999999999999999999 9999999999887663
No 229
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.53 E-value=2.3e-07 Score=98.01 Aligned_cols=41 Identities=34% Similarity=0.571 Sum_probs=36.9
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
....+|+|||||||||++|..|++. |++|+|||+.+.+|+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~ 181 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGL 181 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCce
Confidence 3457999999999999999999999 9999999999887653
No 230
>KOG3256|consensus
Probab=98.53 E-value=2.7e-08 Score=83.51 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=45.3
Q ss_pred CCCCcccccccccccccccccCCeeEEEEee--cCce---eEEEEccCCCccCCcccccCCCCCeeE
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIE--KNKI---QHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~--~~~~---~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
..+.|+. |+.|..+||+.++.++-. .+++ .++.||-..||-||.|..+||++||..
T Consensus 109 geerCIA------CklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaive 169 (212)
T KOG3256|consen 109 GEERCIA------CKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 169 (212)
T ss_pred cchhhhh------HHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCccceec
Confidence 4578988 456999999999887543 2233 367789999999999999999999976
No 231
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=98.53 E-value=3.3e-08 Score=79.04 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=46.2
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeec-----------C-c---eeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEK-----------N-K---IQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~-----------~-~---~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+|.+.|+. ++.|+.+||.+++.+.... . . ...+.+|.+.|+.||.|..+||++||++.
T Consensus 17 ~i~~~~Ci~------C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 17 SIDQEKCIG------CGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred EECHhHCCC------cchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEecC
Confidence 468899988 5779999999998876310 0 0 11246899999999999999999999873
No 232
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=98.52 E-value=8.3e-08 Score=80.88 Aligned_cols=57 Identities=23% Similarity=0.457 Sum_probs=47.0
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
.++.+.|+. |+.|+.+||.+++++..+ ...+.++...|+.||.|..+||.+||+++.
T Consensus 38 ~i~~~~Ci~------C~~C~~~CP~~ai~~~~~---~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 38 LYDVDKCVG------CRMCVTVCPAGVFVYLPE---IRKVALWTGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred EECcccCcC------cccHHHHCCccceEcccc---ccceEecCCcCcChhhhHHhCCcCcEEecc
Confidence 357788987 567999999999887642 135788999999999999999999999753
No 233
>KOG2960|consensus
Probab=98.52 E-value=1.8e-07 Score=82.96 Aligned_cols=152 Identities=22% Similarity=0.384 Sum_probs=92.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeChhhHHhhccccccCCccccccchhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
+.||+|||||-|||++|+..++. .|.++|.|||..-.||+... .|..++.-.+++- .-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~----rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKP-----------------Ah 134 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKN----RPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKP-----------------AH 134 (328)
T ss_pred ccceEEECCCccccceeeeeecc----CCCceEEEEEeeecCCCcccccchhhhhhhhcCh-----------------HH
Confidence 47999999999999999999877 78999999999988876432 3333321111100 00
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEe--eHHHHHHHHHHH-HHHCCCEEEcCceEeEEEEcC--CC--CEEEEEeccc
Q psy14496 101 LFLSSKKSYKIPSWILPICFKNHGNYII--SLSDLVRWMGKK-AENMGIDIFSGFSASEILYDS--KN--NVCGIATNNF 173 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i--~r~~l~~~L~~~-a~~~gv~i~~g~~v~~i~~~~--~g--~v~~V~~~~~ 173 (561)
.|+++ +.+| +.+.+.|++ +...|....... +...+|+++.-+.|+++...+ +| ++.||.++..
T Consensus 135 LFL~E---igvp-------YedegdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWt 204 (328)
T KOG2960|consen 135 LFLQE---IGVP-------YEDEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWT 204 (328)
T ss_pred HHHHH---hCCC-------cccCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeE
Confidence 11111 1111 223445544 233444443333 444799999999998886543 23 5667777543
Q ss_pred ccc-cCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 174 GIN-KEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 174 ~~~-~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
-.. ..|.+ ...|...+++.+||-++|..+..
T Consensus 205 LV~qnHgtQ--sCMDPNviea~~vvS~tGHDGPF 236 (328)
T KOG2960|consen 205 LVTQNHGTQ--SCMDPNVIEAAVVVSTTGHDGPF 236 (328)
T ss_pred EeeeccCcc--ccCCCCeeeEEEEEEccCCCCCc
Confidence 321 22221 33455689999999999977664
No 234
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.52 E-value=5.3e-07 Score=91.97 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=33.6
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~ 65 (561)
.||+|||||+||+.+|+.|++. |++|+|||+++..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~------G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA------GVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC------CCcEEEEeccccccC
Confidence 4899999999999999999999 999999998876543
No 235
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.48 E-value=4.9e-07 Score=96.10 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=31.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~ 60 (561)
.|||+||||||||+++|+.|+++ |.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~------G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH------GKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC------CCeEEEEecc
Confidence 58999999999999999999999 9999999973
No 236
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=98.48 E-value=2.8e-08 Score=71.16 Aligned_cols=47 Identities=36% Similarity=0.587 Sum_probs=30.9
Q ss_pred ccccccccCCeeEEEEeecCcee----EEEEccCCCccCCcccccCCCCCe
Q psy14496 499 AGPEARYCPAGVYEFIIEKNKIQ----HLQINAQNCIHCKTCDIKDPTQNI 545 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~~~~~----~~~~~~~~C~~Cg~C~~~cp~~~i 545 (561)
++.|+.+||.+++++........ ....+.+.|++||.|..+||++||
T Consensus 5 Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 5 CGRCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TTHHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred cchHHHHCCccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 57799999999998876422110 011134589999999999999998
No 237
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.47 E-value=1.9e-07 Score=93.65 Aligned_cols=153 Identities=21% Similarity=0.318 Sum_probs=78.7
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHh-hccccccCCccccccchhh-
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFE-LFPKEKLNKLFNTPVIEER- 99 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~- 99 (561)
.+|+|+||.||++|++|+.|.... ..++..||+.+....| .|-.+....|+- .+.++- .+..+...-.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-----~~~~~f~e~~~~f~Wh--~gmll~~~~~q~~fl~Dlv---t~~~P~s~~sf 71 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-----DLKALFLERRPSFSWH--PGMLLPGARMQVSFLKDLV---TLRDPTSPFSF 71 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH--------EEEEES-SS--TT--GGG--SS-B-SS-TTSSSS---TTT-TTSTTSH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-----CCCEEEEecCCCCCcC--CccCCCCCccccccccccC---cCcCCCCcccH
Confidence 489999999999999999999982 4999999999876554 232222111110 111111 0000111111
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCC--CEEEEEeccccccc
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKN--NVCGIATNNFGINK 177 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g--~v~~V~~~~~~~~~ 177 (561)
+.++...+.+. . ..+.+...+.|..+.+.|.-.+++..-.+.++.+|++|...+++ ..+.|.+.+ .
T Consensus 72 lnYL~~~~rl~-~-------f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----~ 139 (341)
T PF13434_consen 72 LNYLHEHGRLY-E-------FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----S 139 (341)
T ss_dssp HHHHHHTT-HH-H-------HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----T
T ss_pred HHHHHHcCChh-h-------hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----c
Confidence 11222222110 0 00112345788888888877777766558899999999875443 356677642 1
Q ss_pred CCceecccccCeEEecCEEEEccCCC
Q psy14496 178 EGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
+| ++.++.|+.||+|+|..
T Consensus 140 ~g-------~~~~~~ar~vVla~G~~ 158 (341)
T PF13434_consen 140 DG-------DGETYRARNVVLATGGQ 158 (341)
T ss_dssp TS--------EEEEEESEEEE----E
T ss_pred CC-------CeeEEEeCeEEECcCCC
Confidence 22 24689999999999933
No 238
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.47 E-value=3e-07 Score=95.00 Aligned_cols=76 Identities=28% Similarity=0.431 Sum_probs=59.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
....|+|||||||||++|..|++. |++|+|+|+.+.+|+.+..|
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~------G~~Vtv~e~~~~~GGll~yG------------------------------ 165 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRA------GHDVTVFERVALDGGLLLYG------------------------------ 165 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhC------CCeEEEeCCcCCCceeEEec------------------------------
Confidence 348999999999999999999999 99999999999998865443
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEe
Q psy14496 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSAS 155 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~ 155 (561)
+|.+.++. ++.+...+.+++.|++++.++++-
T Consensus 166 ----------IP~~kl~k-------------~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 166 ----------IPDFKLPK-------------DILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred ----------Cchhhccc-------------hHHHHHHHHHHHcCeEEEEcceEC
Confidence 23222332 455666777778899999988774
No 239
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.46 E-value=6.8e-08 Score=78.77 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=46.0
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+|.+.|+. ++.|+.+||.+++.++++ ....+|.+.|+.|+.|..+||.+||++.
T Consensus 47 ~~d~~~Ci~------C~~C~~~CP~~ai~~~~~----~~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 47 EFNRDKCVR------CYLCYIYCPEPAIYLDEE----GYPVFDYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred EEChhHCcC------hhhHHhhCCHhhEEecCC----CcEEECchhCCCcCchhhhcCcCcEEEe
Confidence 357788987 567999999999876542 2467899999999999999999999974
No 240
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.46 E-value=1.9e-06 Score=91.27 Aligned_cols=39 Identities=46% Similarity=0.749 Sum_probs=34.7
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+|||+||||||||+++|+.|++. |.+|+|||+.. .|+..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~------G~~V~lie~~~-~GG~c 42 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL------GLKTAVVEKKY-WGGVC 42 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC------CCeEEEEecCC-CCCce
Confidence 59999999999999999999999 99999999864 45543
No 241
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.46 E-value=1.3e-07 Score=85.20 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=47.0
Q ss_pred CCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14496 488 KIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 488 ~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
..|.+|. +-+|+.+||+++....+. + .-+.+|.+.||+||-|..+||++|..+..
T Consensus 67 ~~C~HC~----~ppCv~vCPtgA~~k~~~-d--GiV~vd~d~CIGC~yCi~ACPyga~~~~~ 121 (203)
T COG0437 67 ISCMHCE----DPPCVKVCPTGALFKREE-D--GIVLVDKDLCIGCGYCIAACPYGAPQFNP 121 (203)
T ss_pred ccccCCC----CCcccccCCCcceEEecC-C--CEEEecCCcccCchHHHhhCCCCCceeCc
Confidence 5688876 789999999998776641 2 37999999999999999999999998855
No 242
>KOG2665|consensus
Probab=98.44 E-value=9.4e-07 Score=83.38 Aligned_cols=170 Identities=22% Similarity=0.270 Sum_probs=101.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc--------eeecceeChhhHHhh--------cc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH--------ILSGAIIDPRSIFEL--------FP 83 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~--------~~~G~~~~~~~l~~l--------~~ 83 (561)
..+||.+|||||+.||+.|..|.-. .|+++|.|+|+....+-+ +++|....|..|..- +-
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lr----hp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY 121 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLR----HPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLY 121 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhc----CCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHH
Confidence 4579999999999999999999887 679999999999876533 344555555544311 11
Q ss_pred ccc--cCCccc------cccchhhhhhhcC-------CCCccc---CCCC----CC-----ceeecCCcEEeeHHHHHHH
Q psy14496 84 KEK--LNKLFN------TPVIEERFLFLSS-------KKSYKI---PSWI----LP-----ICFKNHGNYIISLSDLVRW 136 (561)
Q Consensus 84 ~~~--~~~~~~------~~~~~~~~~~~~~-------~~~~~~---~~~~----~p-----~~~~~~~~~~i~r~~l~~~ 136 (561)
.+. ...+.. ..+...++..++. ++.-.+ ..+. -| ..+..+..-+++.+.+...
T Consensus 122 ~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls 201 (453)
T KOG2665|consen 122 EYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLS 201 (453)
T ss_pred HHhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHH
Confidence 111 111111 1111122211111 100000 0000 00 0011223456888889889
Q ss_pred HHHHHHHCCCEEEcCceEeEEEEcCCC-CEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 137 MGKKAENMGIDIFSGFSASEILYDSKN-NVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 137 L~~~a~~~gv~i~~g~~v~~i~~~~~g-~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+.+.....|-++..+.++..+.++.++ .-..+.+. +| .+.+++.+.||-|+|..|-.
T Consensus 202 ~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~------ng-------k~ee~r~~~~vtc~gl~sdr 259 (453)
T KOG2665|consen 202 FGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVL------NG-------KGEEKRTKNVVTCAGLQSDR 259 (453)
T ss_pred HHHHHHHhcccccccceeccchhccCCCCCCceEEe------cC-------ccceeEEeEEEEeccccHhH
Confidence 999888899999999999999765443 11112211 11 25689999999999988874
No 243
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.44 E-value=5.4e-07 Score=98.70 Aligned_cols=40 Identities=28% Similarity=0.535 Sum_probs=36.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~ 348 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGM 348 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCe
Confidence 468999999999999999999999 9999999999887664
No 244
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=98.44 E-value=8.6e-08 Score=81.13 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=46.4
Q ss_pred cCCCCccccccccccc-----ccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14496 485 KNKKIPIHINFSIYAG-----PEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~-----~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
++.+.|+. |+ .|+.+||.+++.+++. ....+.++++.|++|+.|...||++||++..
T Consensus 5 v~~~~C~g------C~~~~~~~Cv~~CP~~ai~~~~~--~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~ 66 (132)
T TIGR02060 5 VYPTKCDG------CKAGEKTACVYICPNDLMHLDTE--IMKAYNIEPDMCWECYSCVKACPQGAIDVRG 66 (132)
T ss_pred EccccccC------ccCCchhcCHhhcCccceEecCC--CceeeecCchhCccHHHHHHhCCcCceEEEC
Confidence 47788988 45 8999999999887642 1135678999999999999999999998743
No 245
>PLN00071 photosystem I subunit VII; Provisional
Probab=98.43 E-value=8.9e-08 Score=74.61 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=46.8
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCce---eEEEEccCCCccCCcccccCCCCCeeEECCCCC
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKI---QHLQINAQNCIHCKTCDIKDPTQNIEWITPEGG 553 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~---~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g~ 553 (561)
++.+.|+. ++.|+.+||.+++++.+..+.. ....++.++|+.||.|..+||.+||+++.-.|+
T Consensus 6 ~~~~~C~~------C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~~ 71 (81)
T PLN00071 6 KIYDTCIG------CTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGH 71 (81)
T ss_pred EcCCcCcC------hhHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeeeecc
Confidence 35678987 5679999999998876421111 112457899999999999999999998665443
No 246
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.43 E-value=1.5e-06 Score=91.53 Aligned_cols=36 Identities=47% Similarity=0.748 Sum_probs=31.9
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~ 63 (561)
+|+|||||+||+++|..|++. +++.+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~----~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRL----NKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHH----CCCCcEEEEECCCcc
Confidence 699999999999999999987 345799999998765
No 247
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.43 E-value=3.6e-06 Score=85.57 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC-ch
Q psy14496 130 LSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR-GH 205 (561)
Q Consensus 130 r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~-s~ 205 (561)
-.+|.+.|.+.+++.|++++.+++|.++..+ ++++..|.+.+.+ ..+++||.+|+|+|++ |.
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~-------------~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHR-------------DIPLRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCc-------------cceEECCEEEEccCCCcCH
Confidence 3478888999999999999999999998865 5667777764310 1379999999999998 76
No 248
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=98.42 E-value=2.2e-07 Score=71.90 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=45.8
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+++.+.|+. ++.|+.+||.+++.+..+ ....++.+.|+.|+.|..+||++||++.
T Consensus 21 ~i~~~~C~~------C~~C~~~Cp~~ai~~~~~----~~~~i~~~~C~~C~~C~~~CP~~Ai~~~ 75 (78)
T TIGR02179 21 VVDKEKCIK------CKNCWLYCPEGAIQEDEG----GFVGIDYDYCKGCGICANVCPVKAIEMV 75 (78)
T ss_pred EEcCCcCcC------hhHHHhhcCccceEecCC----CcEEecCccCcCccchhhhCCccccEec
Confidence 357788987 467999999999887532 2477899999999999999999999874
No 249
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.42 E-value=1.3e-06 Score=89.86 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=33.1
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
|..+|+|||||+||+++|..|++. .+..+|+||++.+.
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~----~~~~~Itvi~~~~~ 38 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQ----DAHIPITLITADSG 38 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEeCCCC
Confidence 346999999999999999999887 55789999998774
No 250
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=98.42 E-value=8e-08 Score=82.04 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=45.1
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
+++.+.|+. |+.|+.+||.+++..... ..+.++.+.|+.||.|..+||++||.+.+
T Consensus 55 ~~d~~~Ci~------C~~C~~~CP~~ai~~~~~----~~~~i~~~~C~~Cg~Cv~vCP~~a~~l~~ 110 (133)
T PRK09625 55 VHNNEICIN------CFNCWVYCPDAAILSRDK----KLKGVDYSHCKGCGVCVEVCPTNPKSLLM 110 (133)
T ss_pred EEehhHCcC------hhhHHHhCCHhheEecCC----ceEEeCcCcCcChhHHHHHCCcCceEEEe
Confidence 357899988 567999999999765431 35678999999999999999999976543
No 251
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.42 E-value=3.3e-06 Score=87.56 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
+.|.+.|.+.+...|.+++.+++|.+|..++++++++|++.+ |++++|+.||.....
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---------------Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---------------GEVAKCKLVICDPSY 288 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---------------CcEEECCEEEECccc
Confidence 578888888888899999999999999887667788888743 568999999985543
No 252
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=4.5e-07 Score=92.12 Aligned_cols=145 Identities=23% Similarity=0.345 Sum_probs=79.7
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccch--h
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIE--E 98 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~--~ 98 (561)
.|||+|||||-||.-||+..+|. |.++.++--...--+.+.+-..+.-.+-..+..+.+ .+.......+. .
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm------G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~I 77 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM------GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGI 77 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc------CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCC
Confidence 49999999999999999999999 999999876543211111100000000000001111 11111111111 1
Q ss_pred hhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHH-----HHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecc
Q psy14496 99 RFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVR-----WMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNN 172 (561)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~-----~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 172 (561)
++..+....+ ......|.+.++ ++.+.++. .++.++.+ .|+++..+++.++++|.+.+
T Consensus 78 Q~r~LN~sKG---------------PAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~ 141 (621)
T COG0445 78 QFRMLNSSKG---------------PAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD 141 (621)
T ss_pred chhhccCCCc---------------chhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC
Confidence 2222322111 122334444444 44444444 57888655 56777665344689999854
Q ss_pred cccccCCceecccccCeEEecCEEEEccCCC
Q psy14496 173 FGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 173 ~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
|..+.|+.||+++|-+
T Consensus 142 ---------------G~~~~a~aVVlTTGTF 157 (621)
T COG0445 142 ---------------GPEFHAKAVVLTTGTF 157 (621)
T ss_pred ---------------CCeeecCEEEEeeccc
Confidence 6789999999999954
No 253
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=98.41 E-value=1.8e-07 Score=76.41 Aligned_cols=62 Identities=19% Similarity=0.364 Sum_probs=48.0
Q ss_pred ceEEcCCCCcccccccccccccccccCCeeEEEEeecC---ceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 481 HLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN---KIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 481 h~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~---~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+...+|.+.|+. ++.|+.+||.+++++..... +.....++.+.|+.|+.|..+||++||++.
T Consensus 9 ~~v~id~~~Ci~------C~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~~~C~~C~~C~~~CP~~AI~~~ 73 (103)
T PRK09626 9 TPVWVDESRCKA------CDICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPDFAIYVA 73 (103)
T ss_pred CCeEECcccccC------CcchhhhcChhhhccccccccccCceeeEeCCccCCCcCcchhhCChhhEEEe
Confidence 334458899988 57799999999988754311 112356889999999999999999999873
No 254
>KOG0029|consensus
Probab=98.40 E-value=3.2e-07 Score=96.05 Aligned_cols=45 Identities=33% Similarity=0.562 Sum_probs=41.0
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 18 ~~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
......+|||||||+|||+||.+|... |++|+|+|.+..+||++.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~------G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDF------GFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHc------CCceEEEeccCCcCceeE
Confidence 445678999999999999999999999 999999999999998853
No 255
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=98.38 E-value=3.3e-08 Score=69.69 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=32.2
Q ss_pred ccccccccCCeeEEEEeec--CceeEEEEccCCCccCCcccccCCCCC
Q psy14496 499 AGPEARYCPAGVYEFIIEK--NKIQHLQINAQNCIHCKTCDIKDPTQN 544 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~--~~~~~~~~~~~~C~~Cg~C~~~cp~~~ 544 (561)
++.|+.+||.+++.+.+.. .+...+.+|.+.|++||.|..+||++|
T Consensus 5 C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 5 CGACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp --HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred cCchHHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 5789999999999987642 233578899999999999999999986
No 256
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.38 E-value=9.8e-07 Score=93.41 Aligned_cols=40 Identities=33% Similarity=0.525 Sum_probs=36.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+||||||||+++|..|++. |++|+|||+.+.+|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG~ 181 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGGL 181 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCce
Confidence 457999999999999999999999 9999999999877653
No 257
>KOG1335|consensus
Probab=98.38 E-value=3.4e-06 Score=81.81 Aligned_cols=47 Identities=43% Similarity=0.729 Sum_probs=41.1
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeeccee
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAII 73 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~ 73 (561)
.++||+|||+||.|-.+|+..+++ |++.+.+|++...|+.-+.-+.+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl------GlkTacvEkr~~LGGTcLnvGcI 84 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL------GLKTACVEKRGTLGGTCLNVGCI 84 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh------cceeEEEeccCccCceeeecccc
Confidence 469999999999999999999999 99999999999888875544333
No 258
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=98.38 E-value=1.2e-07 Score=73.50 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=47.3
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecC---ceeEEEEccCCCccCCcccccCCCCCeeEECCCC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN---KIQHLQINAQNCIHCKTCDIKDPTQNIEWITPEG 552 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~---~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g 552 (561)
++..+.|+. ++.|+.+||.+++++.+.+. +...+.++.+.|+.||.|...||.++|++++=.|
T Consensus 4 ~~~~~~Ci~------C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~ 69 (80)
T TIGR03048 4 VKIYDTCIG------CTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVYLG 69 (80)
T ss_pred eecCCcCcC------cchHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEEecC
Confidence 456688987 56799999999988764211 1112355779999999999999999999876544
No 259
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=98.38 E-value=2.8e-07 Score=91.84 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=49.2
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14496 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 483 ~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
....+..|.+|. ..+|+.+||.+++...++ + ..+.+|.++|++|+.|..+||+++|.++.-
T Consensus 176 m~y~p~~C~HC~----nP~CV~ACPtGAI~k~ee-d--GiV~ID~dkCiGCg~CV~ACPygAI~~n~~ 236 (492)
T TIGR01660 176 MMYLPRLCEHCL----NPACVASCPSGAIYKREE-D--GIVLIDQDKCRGWRMCISGCPYKKIYFNWK 236 (492)
T ss_pred EEECCCcCcCCC----cccchhhCccCCeEEecC-C--CeEEEehhhccChHHHHHhCCCCCcEecCC
Confidence 345778998854 458999999999875432 2 257899999999999999999999998643
No 260
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.37 E-value=2.1e-06 Score=90.70 Aligned_cols=53 Identities=17% Similarity=0.442 Sum_probs=40.4
Q ss_pred CcccEEEECchhHHHHHHHHHHh-ccccCCCCCcEEEEcCC--------CCCCCceeecceeChhhHH
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQ-LAIKKNKEIKICVLEKG--------SELGAHILSGAIIDPRSIF 79 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~-~~~~~~~G~~V~ViEk~--------~~~g~~~~~G~~~~~~~l~ 79 (561)
.+|||+||||||+|.++|+.+++ . |.+|+|+|+. ...|+.-.+-+.+..+.|.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~------g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~ 63 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLY------KKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMV 63 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhc------CCEEEEEecccCccccccCCccCeecCcCCccHHHHH
Confidence 46999999999999999999999 5 7999999984 3456554444444445443
No 261
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.37 E-value=2.4e-07 Score=75.74 Aligned_cols=55 Identities=16% Similarity=0.327 Sum_probs=46.5
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.++.+.|+. ++.|+.+||.+++.+.++ ..+.+|.+.|..||.|...||.+||++.
T Consensus 47 ~i~~~~Ci~------C~~C~~~CP~~ai~~~~~----~~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09623 47 VVDESKCVK------CYICWKFCPEPAIYIKED----GYVAIDYDYCKGCGICANECPTKAITMV 101 (105)
T ss_pred EECcccCcc------ccchhhhCCHhheEecCC----CcEEeCchhCcCcchhhhhcCcCcEEec
Confidence 458899987 567999999999876542 2478999999999999999999999984
No 262
>KOG0042|consensus
Probab=98.37 E-value=4.4e-07 Score=91.56 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHH
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQI 210 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~~l 210 (561)
.++.-.++=.|.+.|+.+....+|.++..++++++.|++..|. .+|+. .+++|+.||.|+|..|---+++
T Consensus 224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~---iTG~e-------~~I~Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 224 ARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDH---ITGKE-------YEIRAKVVVNATGPFSDSIRKM 293 (680)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEe---ecCcE-------EEEEEEEEEeCCCCccHHHHhh
Confidence 3455555556667899999999999999888888989888662 34442 5799999999999887644443
No 263
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=98.37 E-value=1.6e-07 Score=66.29 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=25.0
Q ss_pred EcCCCCcccccccccccccccccCC-eeEEEEeecCceeEEEEccCCCccCCcccccCC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPA-GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDP 541 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~-~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp 541 (561)
++|.+.|+. ++.|+++||+ ....+... ...+.+++++|++||.|..+||
T Consensus 3 ~id~~~C~~------C~~C~~~CP~~~~~~~~~~---~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 3 VIDEDKCIG------CGRCVKVCPADNAIAIDDG---EKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp ---TT------------TTGGG-TT-----EEE----SSSEEE-TTT--TTSHHHHH-T
T ss_pred ccCcccCcC------CcChHHHccchhHHHhhcc---CCCeEeCcccccccChhhhhCc
Confidence 358899988 5689999999 44333332 1467889999999999999998
No 264
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.37 E-value=4.5e-06 Score=88.21 Aligned_cols=38 Identities=37% Similarity=0.705 Sum_probs=33.6
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
.||+||||||+|+++|..|+++ |.+|+|+|+.. .|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~------g~~v~~~e~~~-~gG~c 39 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQL------GADVTVIERDG-LGGAA 39 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEEccC-CCCcc
Confidence 3899999999999999999999 99999999876 45543
No 265
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.37 E-value=5e-06 Score=88.05 Aligned_cols=33 Identities=36% Similarity=0.683 Sum_probs=31.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~ 60 (561)
+|||+||||||||+.+|+.+++. |.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~------G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY------GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC------CCeEEEEecc
Confidence 58999999999999999999999 9999999974
No 266
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.36 E-value=3.8e-07 Score=96.56 Aligned_cols=42 Identities=38% Similarity=0.642 Sum_probs=39.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
++.+||||||||+.||++|..|+++ |++|+|+||...+|+..
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~------G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARA------GLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhC------CCEEEEEEecCCCCcce
Confidence 3569999999999999999999999 99999999999999864
No 267
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=98.35 E-value=3.7e-07 Score=82.51 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=47.8
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeec-CceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEK-NKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~-~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+|.+.|+. |+.|+.+||.+++.+..+. .+...+.++...|+.||.|..+||++||++.
T Consensus 35 ~d~~~Ci~------Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~ 93 (181)
T PRK08222 35 LMPSQCIA------CGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLT 93 (181)
T ss_pred eChhhCcc------hhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEec
Confidence 47788988 5779999999999876432 2334578899999999999999999999874
No 268
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=98.34 E-value=2.7e-07 Score=82.20 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=47.4
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
...+|.+.|+. ++.|+++||.+++...++ ....++.++|+.||.|..+||++||++.
T Consensus 107 ~~~id~~~Ci~------Cg~C~~aCp~~ai~~~~~----~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 107 VALIDEDNCIG------CTKCIQACPVDAIVGAAK----AMHTVIADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred eEEEECCcCCC------hhHHHHhCCccceEecCC----CceEeecccccChhHHHHhcCcCceEee
Confidence 34568899987 567999999999876532 2467899999999999999999999985
No 269
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.34 E-value=6.9e-06 Score=86.87 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=35.6
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
|||+|||+||+|+++|..|++. |++|+|||+....++.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~------g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA------GLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC------CCeEEEEeccCccCCC
Confidence 6999999999999999999999 9999999999888753
No 270
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.34 E-value=4e-07 Score=87.21 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=47.9
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCC
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPE 551 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~ 551 (561)
..+..|..|. .-+|+.+||.+++...++ + ..+.+|.++|++|+.|..+||++||.++...
T Consensus 126 y~p~~C~hC~----nP~Cv~aCPtgAI~k~ee-d--GiV~ID~ekCiGCg~Cv~ACPygAi~~n~~~ 185 (321)
T TIGR03478 126 YLPRICNHCT----NPACLAACPTGAIYKREE-D--GIVLVDQERCKGYRYCVEACPYKKVYFNPQS 185 (321)
T ss_pred EecccCCCCC----CccchhhCCcCcEEEecC-C--CeEEECHHHCcchHHHHHhCCCCCcEecCCC
Confidence 5678898854 347999999999865432 2 3678999999999999999999999986543
No 271
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.33 E-value=2.5e-06 Score=90.00 Aligned_cols=48 Identities=27% Similarity=0.592 Sum_probs=37.3
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhH
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l 78 (561)
+|+||||||||+++|..|++. |.+|+|+||.+ .|+...+-+.+..+.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~------g~~V~lie~~~-~GG~c~n~gciPsk~l 49 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN------GKNVTLIDEAD-LGGTCLNEGCMPTKSL 49 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC------CCcEEEEECCc-ccccCCCCccccchHH
Confidence 799999999999999999999 99999999975 4544333333333443
No 272
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.33 E-value=5.3e-06 Score=83.22 Aligned_cols=42 Identities=40% Similarity=0.567 Sum_probs=39.4
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
....||||||||.|||++|+.|.+. |++|+|+|.+..+|++.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka------G~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA------GYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc------CcEEEEEeccCCcCcee
Confidence 4579999999999999999999999 99999999999999875
No 273
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.32 E-value=1.7e-05 Score=81.80 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=51.5
Q ss_pred cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14496 125 NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 125 ~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
...++...+.+.|.+.+.+ |++++.+++|++++.+ ++. +.|++.+ |..+++|.||.|+|.++
T Consensus 129 ~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~---------------g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 129 GGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDAN---------------GEVIAASVVVLANGAQA 190 (381)
T ss_pred CcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCC---------------CCEEEcCEEEEcCCccc
Confidence 4567899999999999988 9999999999999864 333 5566632 44689999999999887
Q ss_pred h
Q psy14496 205 H 205 (561)
Q Consensus 205 ~ 205 (561)
.
T Consensus 191 ~ 191 (381)
T TIGR03197 191 G 191 (381)
T ss_pred c
Confidence 6
No 274
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.32 E-value=1.6e-06 Score=87.45 Aligned_cols=65 Identities=25% Similarity=0.321 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 131 SDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
..+.+.|.+++.+ .+|+++.+..+.++..+++..+.||.+.+. +++ -.++.++.||+|+|.-+.+
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~----~~~-------~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNR----NGE-------LGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecC----CCe-------EEEEecCeEEEecCCCccc
Confidence 4788889999877 799999999999998763335558887531 111 1578999999999988775
No 275
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.32 E-value=4.2e-07 Score=87.55 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=49.3
Q ss_pred CceE-EcCCCCcccccccccccccccccCC-eeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14496 480 IHLI-LKNKKIPIHINFSIYAGPEARYCPA-GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 480 ~h~~-~~~~~~c~~~~~~~~~~~c~~~CP~-~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
.|+. .+....|.+|. .-+|+.+||+ ++|...++ ..+.+|.++|++|+.|..+||+++|+|...
T Consensus 82 ~~~~~~~~~~~C~hC~----~p~Cv~aCP~~gA~~~~~~----G~V~id~dkCigC~~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 82 DGLEWLIRKDGCMHCR----EPGCLKACPAPGAIIQYQN----GIVDFDHSKCIGCGYCIVGCPFNIPRYDKV 146 (283)
T ss_pred CCceEEECCccCCCCC----CccccCCCCcCCeEEEcCC----CcEEEeHHHCCcchHHHhhCCCCCcEEcCC
Confidence 4543 24567798865 4579999998 78766432 368899999999999999999999999653
No 276
>PRK02651 photosystem I subunit VII; Provisional
Probab=98.31 E-value=2.4e-07 Score=72.17 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=44.1
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecC---ceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN---KIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~---~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
+..+.|+. ++.|+.+||.+++...+... +.....++++.|+.|+.|..+||.++|++++
T Consensus 6 ~~~~~Ci~------C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 67 (81)
T PRK02651 6 KIYDTCIG------CTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV 67 (81)
T ss_pred cccccCCC------cchHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEEE
Confidence 34688988 56799999999987653211 1112345789999999999999999998543
No 277
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=98.31 E-value=2.4e-07 Score=83.99 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=47.5
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeec-CceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEK-NKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~-~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+|.+.|+. ++.|+.+||.+++.+..+. .+...+.+|...|+.||.|..+||.+||+++
T Consensus 35 ~d~~~C~~------C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~ 93 (180)
T PRK12387 35 YNPQQCIG------CAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLS 93 (180)
T ss_pred EChhhCcC------hhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEcc
Confidence 37888988 5679999999998876532 1224567899999999999999999999875
No 278
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.31 E-value=3.3e-07 Score=90.84 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=49.0
Q ss_pred CceEEcCCCCcccc-cccccccccccccCC-----eeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee-EECCC
Q psy14496 480 IHLILKNKKIPIHI-NFSIYAGPEARYCPA-----GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE-WITPE 551 (561)
Q Consensus 480 ~h~~~~~~~~c~~~-~~~~~~~~c~~~CP~-----~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~-~~~p~ 551 (561)
.||-|.|.+.|.-. | ..-|+++||. .|++++++ . .+-+|..+-|++||.|..+||++||+ .+.|+
T Consensus 3 ~riAvvd~D~C~PkkC----~~eC~~yCP~vrtg~~~I~i~~~-~--gkpvIsE~lCiGCGICvkkCPF~AI~IvnLP~ 74 (591)
T COG1245 3 MRIAVVDYDRCQPKKC----GYECIKYCPVVRTGKETIEIDED-T--GKPVISEELCIGCGICVKKCPFDAISIVNLPE 74 (591)
T ss_pred ceEEEeehhccCcccc----chhhhhcCCCccCCCeeEEecCC-C--CCceeEhhhhccchhhhccCCcceEEEecCch
Confidence 45667777776432 2 3569999995 57787654 2 24699999999999999999999998 55665
No 279
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.30 E-value=2.8e-06 Score=86.47 Aligned_cols=39 Identities=38% Similarity=0.500 Sum_probs=35.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
..+|+|||||+||+++|..|++. |++|+|||+.+.+++.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~~~gg~ 56 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL------GYEVHVYDKLPEPGGL 56 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCcEEEEeCCCCCCce
Confidence 46999999999999999999999 9999999998887653
No 280
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.30 E-value=5e-06 Score=87.17 Aligned_cols=37 Identities=30% Similarity=0.608 Sum_probs=33.0
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g 64 (561)
+|+|||||+||+++|..|++. .++.+|+|||+.+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~----~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh----CCCCCEEEEECCCCcc
Confidence 799999999999999999886 5689999999987653
No 281
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.30 E-value=7.2e-06 Score=84.89 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=31.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~ 63 (561)
..+|+|||||+||+++|..|++. ++..+|+|+++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~----~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQ----GFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhh----CCCCCEEEeCCCCCC
Confidence 45899999999999999999998 223489999988654
No 282
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.29 E-value=4.1e-05 Score=77.39 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=55.2
Q ss_pred CCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14496 123 HGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 123 ~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
.....++..+|.+.|.+.+.+.|++++.+++|+++..+ ++.+.+|.+.+ | +++||.||.|+|.
T Consensus 129 ~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~---------------g-~~~a~~vV~a~G~ 191 (337)
T TIGR02352 129 PDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPS---------------G-DVQADQVVLAAGA 191 (337)
T ss_pred CCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCC---------------C-EEECCEEEEcCCh
Confidence 34567899999999999999999999999999999864 55566777632 3 7999999999998
Q ss_pred Cch
Q psy14496 203 RGH 205 (561)
Q Consensus 203 ~s~ 205 (561)
++.
T Consensus 192 ~~~ 194 (337)
T TIGR02352 192 WAG 194 (337)
T ss_pred hhh
Confidence 775
No 283
>PRK06273 ferredoxin; Provisional
Probab=98.28 E-value=2.8e-07 Score=81.39 Aligned_cols=57 Identities=21% Similarity=0.301 Sum_probs=45.3
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCc--------eeEEEEccCCCccCCcccccCCCCCeeE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNK--------IQHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~--------~~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
++.+.|+. |+.|..+||.+++.+...++. ...+.+|.++|+.||.|..+||.+||..
T Consensus 46 id~~~Cig------Cg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 46 VFEELCIG------CGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred ECchhCcC------hhHHHHhcCccceeeecccccchhcccccccceecccccCcCCCCcchhCCHhheec
Confidence 37788988 567999999999987642110 1246889999999999999999999854
No 284
>PRK07208 hypothetical protein; Provisional
Probab=98.28 E-value=8.7e-07 Score=94.30 Aligned_cols=42 Identities=33% Similarity=0.530 Sum_probs=39.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
|+..||+|||||++||++|+.|+++ |++|+|+|+++.+|+..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~------g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR------GYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCcee
Confidence 5678999999999999999999999 99999999999998864
No 285
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=98.28 E-value=3.8e-07 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEccCCCccCCcccccCCCCCee
Q psy14496 523 LQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 523 ~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
+++|++.|++||.|..+||.+||+
T Consensus 1 ~~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 1 PVIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEEETTTSSS-THHHHHSTTSSEE
T ss_pred CEEchHHCCCcchhhhhcccccCC
Confidence 468999999999999999999996
No 286
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.27 E-value=3.3e-05 Score=81.12 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=73.8
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-.|+|||||..|+-+|..|++. |.+|+|+++.....
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~------G~~Vtlv~~~~~~~-------------------------------------- 308 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL------GAEVHCLYRRTRED-------------------------------------- 308 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEeecCccc--------------------------------------
Confidence 5899999999999999999999 99999999875310
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc---cccCC
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG---INKEG 179 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~---~~~~g 179 (561)
.+ . .....+.+++.||++++++.++++..++++++.+|.+.... .+.+|
T Consensus 309 --------~~-----~---------------~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g 360 (449)
T TIGR01316 309 --------MT-----A---------------RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSG 360 (449)
T ss_pred --------CC-----C---------------CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCC
Confidence 00 0 01123445678999999999999976556777777664211 11233
Q ss_pred ceec--ccccCeEEecCEEEEccCCC
Q psy14496 180 IIKK--NFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 180 ~~~~--~f~~g~~i~ad~vV~AdG~~ 203 (561)
+... .-....++.+|.||.|.|..
T Consensus 361 ~~~~~~~~~~~~~i~~D~Vi~AiG~~ 386 (449)
T TIGR01316 361 ERRFLPCGDAECKLEADAVIVAIGNG 386 (449)
T ss_pred CeeeeecCCceEEEECCEEEECCCCC
Confidence 2111 11112468999999999954
No 287
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.26 E-value=5.4e-05 Score=79.03 Aligned_cols=98 Identities=26% Similarity=0.430 Sum_probs=68.8
Q ss_pred ccEEEECchhHHHHHHHHHHhcccc--------CCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccc
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIK--------KNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTP 94 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~--------~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~ 94 (561)
..|+|||||++|+-+|..|+...+. ..++.+|+|+|+.+.+-..
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~---------------------------- 225 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS---------------------------- 225 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc----------------------------
Confidence 3799999999999999999763211 0137899999987653110
Q ss_pred cchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14496 95 VIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
++ ..+.+.+.+.+++.||+++.+++|+++.. + .|.+
T Consensus 226 ---------------------~~-------------~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~---- 261 (424)
T PTZ00318 226 ---------------------FD-------------QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVL---- 261 (424)
T ss_pred ---------------------CC-------------HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEE----
Confidence 00 02445566667789999999999998852 2 2334
Q ss_pred cccCCceecccccCeEEecCEEEEccCCC
Q psy14496 175 INKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
++|.++.+|+||.|.|..
T Consensus 262 -----------~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 262 -----------KDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred -----------CCCCEEEccEEEEccCCC
Confidence 335689999999999954
No 288
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=98.26 E-value=8.5e-07 Score=79.21 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=43.2
Q ss_pred CCCcccccccccccccccccCCeeEEEEeec--Cce---eEEEEccCCCccCCcccccCCCCCeeE
Q psy14496 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEK--NKI---QHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 487 ~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~--~~~---~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
.+.|+. |+.|+.+||.+++.+.... ++. ..+.+|...|+.||.|..+||++||++
T Consensus 57 ~~~Ci~------C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~ 116 (164)
T PRK05888 57 EERCIA------CKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVE 116 (164)
T ss_pred CccCCc------ccChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCccee
Confidence 348987 5679999999998765421 111 246689999999999999999999986
No 289
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.25 E-value=3e-07 Score=85.52 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=48.4
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCC
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPE 551 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~ 551 (561)
+|.+.|.. ||.|.++|+-+|+.+.++ ..+.+|+..|=+||+|.+.||..||+.+.-.
T Consensus 66 i~~e~C~~------CG~C~~vC~f~Ai~~~~~----~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~ 122 (284)
T COG1149 66 IDPEKCIR------CGKCAEVCRFGAIVVLPG----GKPVLNPDLCEGCGACSIVCPEPAIEEEPVV 122 (284)
T ss_pred cChhhccc------cCcHHHhCCCCeEEEcCC----CceecCcccccCcccceeeCCCcccccccce
Confidence 57788988 678999999999887553 4799999999999999999999999875433
No 290
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2e-06 Score=82.30 Aligned_cols=115 Identities=23% Similarity=0.412 Sum_probs=79.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...|||+||||||||.++|+..+|. |++.-|+- ...|+ .+++.-.++.++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARK------GiRTGl~a--erfGG-----QvldT~~IENfIs---------------- 259 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARK------GIRTGLVA--ERFGG-----QVLDTMGIENFIS---------------- 259 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhh------cchhhhhh--hhhCC-----eeccccchhheec----------------
Confidence 3469999999999999999999999 99877663 22333 2333222222211
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcC-CCCEEEEEecccccccC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDS-KNNVCGIATNNFGINKE 178 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~-~g~v~~V~~~~~~~~~~ 178 (561)
.+ . ..-.+|...|.+.+.+..|++...-++++++... .+....|+
T Consensus 260 -----------v~-----~---------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~--------- 305 (520)
T COG3634 260 -----------VP-----E---------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVE--------- 305 (520)
T ss_pred -----------cc-----c---------ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEE---------
Confidence 11 0 1112688889999999999998888888876531 23344444
Q ss_pred CceecccccCeEEecCEEEEccCCC
Q psy14496 179 GIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 179 g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
+++|..++++-||+++|++
T Consensus 306 ------l~nGavLkaktvIlstGAr 324 (520)
T COG3634 306 ------LANGAVLKARTVILATGAR 324 (520)
T ss_pred ------ecCCceeccceEEEecCcc
Confidence 4668899999999999964
No 291
>PRK13984 putative oxidoreductase; Provisional
Probab=98.25 E-value=3.1e-06 Score=92.60 Aligned_cols=40 Identities=40% Similarity=0.507 Sum_probs=36.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+|||+||||+++|..|++. |++|+|||+.+.+++.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~ 321 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGV 321 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCce
Confidence 457899999999999999999999 9999999999887653
No 292
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.24 E-value=1.9e-05 Score=81.29 Aligned_cols=99 Identities=18% Similarity=0.292 Sum_probs=73.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
.+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+... .
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~------g~~Vtlv~~~~~~l~~--------------~--------------------- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA------GKAVTLVDNAASLLAS--------------L--------------------- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEecCCcccch--------------h---------------------
Confidence 5799999999999999999999 9999999987653110 0
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
++ ..+...+.+.+++.|+++++++.++++..++ ..+.|.+
T Consensus 181 -------------~~-------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~------------ 220 (377)
T PRK04965 181 -------------MP-------------PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATL------------ 220 (377)
T ss_pred -------------CC-------------HHHHHHHHHHHHhCCCEEEECCeEEEEEccC--CEEEEEE------------
Confidence 00 0233456666777899999999999987542 2233444
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.+|.++.+|+||.|+|..+.
T Consensus 221 ---~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 221 ---DSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred ---cCCcEEECCEEEECcCCCcc
Confidence 34668999999999997664
No 293
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=98.24 E-value=5.6e-07 Score=81.42 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=44.0
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEee--c----CceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIE--K----NKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~--~----~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+.+.|+. |+.|+.+||.+++.+... . .....+.+|.+.|+.||.|..+||++||+++
T Consensus 59 ~~~~kCi~------Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~ 122 (183)
T TIGR00403 59 FEFDKCIA------CEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMT 122 (183)
T ss_pred eCcccCcC------cCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeecc
Confidence 46788988 567999999997543210 0 0113577899999999999999999999874
No 294
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.23 E-value=4.1e-06 Score=90.93 Aligned_cols=52 Identities=27% Similarity=0.483 Sum_probs=41.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC-CCCCCceeecceeChhhHH
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG-SELGAHILSGAIIDPRSIF 79 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~-~~~g~~~~~G~~~~~~~l~ 79 (561)
+|||+||||||+|.++|+.+++. |.+|+|||+. ..+|+.-..-+.+..+.|.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~------G~kV~lie~~~~~lGGtCvn~GCiPsK~l~ 168 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMER------GLKVIIFTGDDDSIGGTCVNVGCIPSKALL 168 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCccccceeEeCCcchHHHH
Confidence 68999999999999999999999 9999999975 3467665544455444443
No 295
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.23 E-value=3.4e-06 Score=86.90 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=37.1
Q ss_pred CcccEEEECchhHHHHHHHHHH-hccccCCCCCcEEEEcCCCCCCCceeec
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLK-QLAIKKNKEIKICVLEKGSELGAHILSG 70 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La-~~~~~~~~G~~V~ViEk~~~~g~~~~~G 70 (561)
....|+|||||||||.+|..|+ +. |++|+||||.+.+++.+..|
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~------g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHE------RVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc------CCeEEEEecCCCCccEEEEe
Confidence 3568999999999999999764 66 99999999999998755443
No 296
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.23 E-value=1e-05 Score=77.15 Aligned_cols=178 Identities=21% Similarity=0.239 Sum_probs=92.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC--CCCce--eeccee--C-hh--------hHHhhccc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE--LGAHI--LSGAII--D-PR--------SIFELFPK 84 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~--~g~~~--~~G~~~--~-~~--------~l~~l~~~ 84 (561)
..++||+|||||.|||.+|-.|+.+ |.+|+|+|...+ .|+.. .-|+.+ + |. .++-...+
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~a------G~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqD 76 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADA------GKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQD 76 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhc------CceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHh
Confidence 4579999999999999999999999 999999998754 33332 123322 1 11 11111223
Q ss_pred cccCCccccccc---------------hhhhhhhcCCCCcccC---------------CCCCCceeecCCcEEeeHHHHH
Q psy14496 85 EKLNKLFNTPVI---------------EERFLFLSSKKSYKIP---------------SWILPICFKNHGNYIISLSDLV 134 (561)
Q Consensus 85 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---------------~~~~p~~~~~~~~~~i~r~~l~ 134 (561)
|.-...+.++-+ .+.-.|+...+-..+| ...+|...-..+.----..-|.
T Consensus 77 W~gtA~FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFv 156 (552)
T COG3573 77 WFGTAAFDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFV 156 (552)
T ss_pred hhcccccCCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHH
Confidence 331111111110 1111222211111111 1112221110010000123466
Q ss_pred HHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccccc--ccCCceec-ccccCeEEecCEEEEccCCCc
Q psy14496 135 RWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGI--NKEGIIKK-NFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 135 ~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~--~~~g~~~~-~f~~g~~i~ad~vV~AdG~~s 204 (561)
+.+.+...+.-+++.+.++|..+..+ ++++.+|+-.-... ...|++.. ......+++|..||.+.|.-+
T Consensus 157 r~~re~~~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIG 228 (552)
T COG3573 157 RRLREAQRRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIG 228 (552)
T ss_pred HHHHHHHhCCceEEEeeeeccceEee-CCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcC
Confidence 77777666666999999999999875 78888876421110 11222211 111224688899999987543
No 297
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.23 E-value=1.8e-05 Score=81.95 Aligned_cols=98 Identities=20% Similarity=0.331 Sum_probs=73.4
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
.+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+....
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtlv~~~~~~l~~~----------------------------------- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR------RCKVTVIELAATVMGRN----------------------------------- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCcchhhh-----------------------------------
Confidence 5799999999999999999999 99999999876542100
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
.+ ..+.+.+.+.+++.||+++++++++++.. ++ .+.|.+.
T Consensus 184 -------------~~-------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~-~~~v~l~----------- 223 (396)
T PRK09754 184 -------------AP-------------PPVQRYLLQRHQQAGVRILLNNAIEHVVD--GE-KVELTLQ----------- 223 (396)
T ss_pred -------------cC-------------HHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CC-EEEEEEC-----------
Confidence 00 02344566667788999999999999864 22 2334442
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+|.++.+|+||.|.|....
T Consensus 224 ----~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 224 ----SGETLQADVVIYGIGISAN 242 (396)
T ss_pred ----CCCEEECCEEEECCCCChh
Confidence 3568999999999997655
No 298
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.21 E-value=1.9e-05 Score=79.91 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=80.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccc-cchhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTP-VIEERF 100 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~ 100 (561)
.++|+|||+|++|+.+|.+|.+..+ +...|.|||+.+..|..+ .++...-..++..-........+ ...+-.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~---~~~~Isi~e~~~~~G~Gi----aYs~~~p~~~lNv~a~~mS~~~pD~p~~F~ 73 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPR---PSGLISIFEPRPNFGQGI----AYSTEEPEHLLNVPAARMSAFAPDIPQDFV 73 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCC---CCCceEEeccccccCCCc----cCCCCCchhhhccccccccccCCCCchHHH
Confidence 3789999999999999999988732 233499999999876432 22111100010000000111101 123344
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH---CCC---EEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14496 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN---MGI---DIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~---~gv---~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
.|+...... ...+....+.+.....|..|-.+|.+.... .+- -.+...+++++...+++...-+.+.
T Consensus 74 ~WL~~~~~~----~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~--- 146 (474)
T COG4529 74 RWLQKQLQR----YRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTA--- 146 (474)
T ss_pred HHHHhcccc----cCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecC---
Confidence 566543100 011111111223335565555555554432 221 1223445555555434444444443
Q ss_pred cccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 175 INKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+|.+..||.+|.|+|..-.
T Consensus 147 ------------~g~~~~ad~~Vlatgh~~~ 165 (474)
T COG4529 147 ------------DGPSEIADIIVLATGHSAP 165 (474)
T ss_pred ------------CCCeeeeeEEEEeccCCCC
Confidence 4678899999999995444
No 299
>PRK06991 ferredoxin; Provisional
Probab=98.21 E-value=5.2e-07 Score=86.15 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=46.1
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++|.+.|+. |+.|+.+||.+++.+... ....++...|++||.|..+||.++|++.
T Consensus 81 ~id~~~Cig------Cg~Cv~aCP~~AI~~~~~----~~~~v~~~~CigCg~Cv~vCP~~AI~~~ 135 (270)
T PRK06991 81 VIDEQLCIG------CTLCMQACPVDAIVGAPK----QMHTVLADLCTGCDLCVPPCPVDCIDMV 135 (270)
T ss_pred EEccccCCC------CcHHHHhCCHhheecccc----cceeeCHhhCCCchHHHhhCCcCCeEee
Confidence 457889988 567999999999876532 2467889999999999999999999974
No 300
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.21 E-value=6.7e-06 Score=84.20 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=33.3
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhc
Q psy14496 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICS 372 (561)
Q Consensus 330 ~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~ 372 (561)
..++++++||++...+....+-...|+..|..+|+.|...+.+
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcC
Confidence 4589999999997654333444567999999999999888754
No 301
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=98.20 E-value=5.7e-07 Score=81.88 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=46.7
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
...+|.+.|+. ++.|+++||.+++..... ....++.+.|+.||.|..+||++||++.
T Consensus 108 ~~~id~~~Ci~------Cg~Cv~aCp~~ai~~~~~----~~~~v~~~~C~~Cg~Cv~vCP~~AI~~~ 164 (191)
T PRK05113 108 VAFIDEDNCIG------CTKCIQACPVDAIVGATK----AMHTVISDLCTGCDLCVAPCPTDCIEMI 164 (191)
T ss_pred eeEEeCCcCCC------CChhhhhCCHhhhecccC----CceeecCCcCCchHHHHHHcCcCceEEe
Confidence 34568899988 567999999999765431 2457889999999999999999999885
No 302
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.19 E-value=1.2e-06 Score=78.20 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=42.8
Q ss_pred ccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14496 499 AGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
++.|+.+||.+++++.....+.....+|.++|++||.|..+||++||+.+..
T Consensus 109 C~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~~C~gCg~C~~~CP~~AI~~~~~ 160 (163)
T PRK10194 109 CRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEYL 160 (163)
T ss_pred cCcchhhCCHhHeEeeecCCCcccceeCcccCcCcchhhhhCCccceEeccc
Confidence 6789999999999986532232346889999999999999999999998654
No 303
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.19 E-value=1.6e-06 Score=91.59 Aligned_cols=39 Identities=46% Similarity=0.695 Sum_probs=36.3
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCC--CcEEEEcCCCCCCCcee
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKE--IKICVLEKGSELGAHIL 68 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G--~~V~ViEk~~~~g~~~~ 68 (561)
+|+|||||+|||+||+.|++. | ++|+|+|+++.+|+++.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~------G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK------GPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh------CCCCCEEEEEcCCCCcceEE
Confidence 699999999999999999998 7 99999999999998754
No 304
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=1.8e-06 Score=88.22 Aligned_cols=40 Identities=33% Similarity=0.507 Sum_probs=37.5
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~ 69 (561)
.|+|+|||+|||+||+.|+.+ |++|+|+|+++.+|++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~------g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA------GYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC------CCceEEEeccCccCceeee
Confidence 699999999999999999999 9999999999999987643
No 305
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.17 E-value=6.3e-06 Score=86.72 Aligned_cols=49 Identities=27% Similarity=0.502 Sum_probs=36.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHH
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIF 79 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~ 79 (561)
+|||+||||||+|.++|. +++ |.+|+|+|+.. .|+.-.+-+.+..+.|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~------g~~V~lie~~~-~GGtC~n~GCiPsK~l~ 50 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFA------DKRIAIVEKGT-FGGTCLNVGCIPTKMFV 50 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHC------CCeEEEEeCCC-CCCeeeccCccchHHHH
Confidence 589999999999998864 457 99999999854 56655444455545443
No 306
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=98.17 E-value=8.1e-07 Score=72.30 Aligned_cols=61 Identities=21% Similarity=0.403 Sum_probs=47.9
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
.++.+.|+. ++.|+.+||.+++++..+......+.++.+.|+.||.|..+||.+||++..-
T Consensus 25 ~~~~~~Ci~------Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~ 85 (99)
T COG1145 25 VIDAEKCIG------CGLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAEE 85 (99)
T ss_pred EeCccccCC------CCCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeehhhc
Confidence 356777988 5789999999998873321002479999999999999999999999887443
No 307
>PRK07846 mycothione reductase; Reviewed
Probab=98.16 E-value=1.9e-05 Score=83.03 Aligned_cols=48 Identities=29% Similarity=0.514 Sum_probs=35.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhH
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l 78 (561)
+|||+||||||+|.++|.. +. |.+|+|+|+.. .|+...+-+.+..+.|
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~------G~~V~lie~~~-~GGtC~n~GCiPsK~l 48 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA------DKRIAIVEKGT-FGGTCLNVGCIPTKMF 48 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC------CCeEEEEeCCC-CCCcccCcCcchhHHH
Confidence 4899999999999998865 56 99999999864 5555444444444444
No 308
>PLN02268 probable polyamine oxidase
Probab=98.16 E-value=2.1e-06 Score=90.15 Aligned_cols=40 Identities=33% Similarity=0.617 Sum_probs=37.4
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
.+|+|||||+|||++|+.|.+. |++|+|+|+++.+|+++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~------g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDA------SFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCCCCCceee
Confidence 3799999999999999999999 999999999999998864
No 309
>KOG0404|consensus
Probab=98.16 E-value=9.3e-06 Score=73.04 Aligned_cols=120 Identities=23% Similarity=0.315 Sum_probs=77.9
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchh
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEE 98 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 98 (561)
+....+|+|||+|||+-++|+.++++ .++.+|||-.-.- + +-.|+.+..-+-.+-
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaara------elkPllfEG~~~~-~-i~pGGQLtTTT~veN----------------- 59 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARA------ELKPLLFEGMMAN-G-IAPGGQLTTTTDVEN----------------- 59 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhc------ccCceEEeeeecc-C-cCCCceeeeeecccc-----------------
Confidence 34456899999999999999999999 9999999965321 1 111221110000000
Q ss_pred hhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccC
Q psy14496 99 RFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKE 178 (561)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~ 178 (561)
+|. +|. .|.-.+|...+.+++++-|.+|+.. .|.++... ++...|.+
T Consensus 60 ------------fPG--FPd--------gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~s--skpF~l~t-------- 106 (322)
T KOG0404|consen 60 ------------FPG--FPD--------GITGPELMDKMRKQSERFGTEIITE-TVSKVDLS--SKPFKLWT-------- 106 (322)
T ss_pred ------------CCC--CCc--------ccccHHHHHHHHHHHHhhcceeeee-ehhhcccc--CCCeEEEe--------
Confidence 111 222 1344578899999999999999776 46666553 22333444
Q ss_pred CceecccccCeEEecCEEEEccCCCc
Q psy14496 179 GIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 179 g~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
+...+++|.||.|+|+..
T Consensus 107 --------d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 107 --------DARPVTADAVILATGASA 124 (322)
T ss_pred --------cCCceeeeeEEEecccce
Confidence 235899999999999654
No 310
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.15 E-value=7.5e-06 Score=91.73 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=31.3
Q ss_pred EEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy14496 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64 (561)
Q Consensus 25 VvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g 64 (561)
|+|||||+||+++|..|.+.. .++++|+|||+.+.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~---~~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN---RHMFEITIFGEEPHPN 37 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC---CCCCeEEEEeCCCCCC
Confidence 699999999999999998761 2368999999988764
No 311
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.14 E-value=1.6e-06 Score=81.51 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=45.8
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++...|..|. ..+|+.+||.+++...++ . ..+.+|.+.|++|+.|..+||++||.+.
T Consensus 89 ~~~~~C~~C~----~~~Cv~~CP~gAi~~~~~-~--g~v~id~~~C~~C~~C~~aCP~~A~~~~ 145 (225)
T TIGR03149 89 FFRKSCQHCD----NAPCVAVCPTGASFKDEE-T--GIVDVHKDLCVGCQYCIAACPYRVRFIH 145 (225)
T ss_pred ECchhccCCc----CcChHhhCCCCcEEEeCC-C--CeEEechhhCCcchHHHHhCCCCCcEec
Confidence 4567888754 347999999999876532 1 2577999999999999999999999874
No 312
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=98.13 E-value=1.5e-06 Score=73.61 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=43.5
Q ss_pred CCCcccccccccccccccccCCeeEEEEeec--Cce---eEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEK--NKI---QHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 487 ~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~--~~~---~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+.|+. |+.|+.+||.+++.+.... ++. ..+.++...|+.||.|..+||.++|+++
T Consensus 42 ~~~Ci~------C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~ 102 (122)
T TIGR01971 42 EEKCIG------CTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLT 102 (122)
T ss_pred cCcCcC------cchhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCcccccc
Confidence 377877 5679999999988765421 111 2467899999999999999999999764
No 313
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=98.12 E-value=3.9e-07 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=21.4
Q ss_pred EEEccCCCccCCcccccCCCCCe
Q psy14496 523 LQINAQNCIHCKTCDIKDPTQNI 545 (561)
Q Consensus 523 ~~~~~~~C~~Cg~C~~~cp~~~i 545 (561)
.++|+++|++||.|..+||.+||
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChhHHHHhcchhcC
Confidence 57899999999999999999987
No 314
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=98.11 E-value=6.6e-07 Score=89.03 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=46.0
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
+.+.|..||. ++.|+..||.+++++.++. ...++.+|.++|++||.|..+||.+||+
T Consensus 176 ~~~~~~~~c~---~~~Cv~~CP~~Ai~~~~~~-~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 176 NHEAVRNVCE---IPSVVAACPTGALKPRRDG-KNKSLEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred cHHHHHhhcC---CCceEeeCchhhceecccC-CCCceeeccccCCcCCchHHhCchhhcc
Confidence 3455666665 7899999999999985432 1246999999999999999999999985
No 315
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.11 E-value=7.9e-07 Score=88.05 Aligned_cols=60 Identities=20% Similarity=0.432 Sum_probs=47.9
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 483 ~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.++|.+.|+. |+.|+.+||.+++.+.....+...+.++..+|+.||.|..+||++||.+.
T Consensus 43 ~~~~~~~C~~------C~~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 102 (295)
T TIGR02494 43 LLFKENRCLG------CGKCVEVCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPSGALSIV 102 (295)
T ss_pred EEEccccCCC------CchhhhhCcccccccccccCCCcceeechhhcCchhHhhccCcHhHHhhh
Confidence 3568899988 57899999999987432212224688999999999999999999999873
No 316
>PLN02568 polyamine oxidase
Probab=98.10 E-value=3.8e-06 Score=89.59 Aligned_cols=48 Identities=29% Similarity=0.512 Sum_probs=39.0
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+++..||+|||||+|||++|+.|++... ..++++|+|+|++..+|+.+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~-~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSA-ANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccc-ccCCceEEEEeCCCCcCCeE
Confidence 4456899999999999999999998810 01139999999999998875
No 317
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.09 E-value=3.8e-05 Score=81.49 Aligned_cols=103 Identities=22% Similarity=0.334 Sum_probs=72.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~------g~~Vtli~~~~~il~~----------------------------------- 218 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADF------GVEVTVVEAADRILPT----------------------------------- 218 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCeEEEEEecCccCCc-----------------------------------
Confidence 46899999999999999999999 9999999987653110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. ...+.+.+.+.+++.|++++.+++|+++...+++.+..+.+.+ |+
T Consensus 219 ---------~------------------~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------g~- 264 (472)
T PRK05976 219 ---------E------------------DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------GE- 264 (472)
T ss_pred ---------C------------------CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC------Cc-
Confidence 0 0123445566667789999999999999642133333333321 11
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++.+|.||.|.|....
T Consensus 265 ------~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 265 ------EKTLEADKVLVSVGRRPN 282 (472)
T ss_pred ------eEEEEeCEEEEeeCCccC
Confidence 136899999999996644
No 318
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=98.09 E-value=1.3e-06 Score=82.82 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=46.1
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
+.+..|..|. .-+|+.+||.+++..+++ ..+.+|++.|++|+.|..+||+++|++..
T Consensus 95 ~~~~~C~~C~----~p~Cv~~CP~~Ai~~~~~----G~v~id~~~CigC~~Cv~aCP~~Ai~~~~ 151 (244)
T PRK14993 95 LLPRLCNHCD----NPPCVPVCPVQATFQRED----GIVVVDNKRCVGCAYCVQACPYDARFINH 151 (244)
T ss_pred ecchhcCCcC----CccCccccCCCCEEECCC----CCEEEcHHHCCCHHHHHHhcCCCCCEEeC
Confidence 3467888754 347999999999765432 36889999999999999999999999854
No 319
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.08 E-value=3.6e-05 Score=86.40 Aligned_cols=111 Identities=25% Similarity=0.300 Sum_probs=79.9
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-.++|||||+.|+-+|..|++. |.+|+|+|+.+.+-...
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~------G~~VtvVe~~~~ll~~~----------------------------------- 184 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL------GVETHVIEFAPMLMAEQ----------------------------------- 184 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEeccccchhhh-----------------------------------
Confidence 4699999999999999999999 99999999876431100
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
++ ....+.|.+.+++.||+++.++.++++..+.++.+..|.+
T Consensus 185 --------ld------------------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~------------ 226 (847)
T PRK14989 185 --------LD------------------QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF------------ 226 (847)
T ss_pred --------cC------------------HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE------------
Confidence 00 0233456667778899999999999996532233344444
Q ss_pred cccccCeEEecCEEEEccCCCchhhHHHHHHcCCC
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLD 217 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~ 217 (561)
.+|.++.+|+||.|.|.+... .+.+..|+.
T Consensus 227 ---~dG~~i~~D~Vv~A~G~rPn~--~L~~~~Gl~ 256 (847)
T PRK14989 227 ---ADGSELEVDFIVFSTGIRPQD--KLATQCGLA 256 (847)
T ss_pred ---CCCCEEEcCEEEECCCcccCc--hHHhhcCcc
Confidence 446789999999999988764 244445554
No 320
>PRK08764 ferredoxin; Provisional
Probab=98.07 E-value=1.9e-06 Score=74.03 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=42.7
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+.+.|+. ++.|+++||.++++.... ....++.+.|+.||.|..+||++||+|.
T Consensus 83 ~~~~Ci~------C~~Cv~aCp~~ai~~~~~----~~~~v~~~~C~~Cg~Cv~~CP~~Ai~~~ 135 (135)
T PRK08764 83 VEADCIG------CTKCIQACPVDAIVGGAK----HMHTVIAPLCTGCELCVPACPVDCIELH 135 (135)
T ss_pred CcccCcC------cchHHHhCChhhcCccCC----CceeecCCcCcCccchhhhcCccceEeC
Confidence 4467877 567999999999765421 2356789999999999999999999873
No 321
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.07 E-value=1.8e-05 Score=88.80 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g 64 (561)
+.+|+|||+|+||+++|..|.+.. ..++++|+||++.+.+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~--~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKA--DAANFDITVFCEEPRIA 43 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhC--CCCCCeEEEEECCCCCc
Confidence 458999999999999999997651 12368999999998764
No 322
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.07 E-value=4e-05 Score=81.18 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=73.1
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
..+|+|||||++|+.+|..|++. |.+|+|+|+.+.+...
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~----------------------------------- 208 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASL------GSKVTVIEMLDRILPG----------------------------------- 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCCCCCC-----------------------------------
Confidence 36899999999999999999999 9999999987653110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. ...+.+.+.+.+++.|++++.+++|+++..+ ++.+ .+.+.+ |+
T Consensus 209 ---------~------------------~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~------g~- 252 (461)
T TIGR01350 209 ---------E------------------DAEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQV-VYENKG------GE- 252 (461)
T ss_pred ---------C------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-EEEEeC------Cc-
Confidence 0 0123445666777789999999999999764 3332 244321 10
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++.+|.||.|.|..+.
T Consensus 253 ------~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 253 ------TETLTGEKVLVAVGRKPN 270 (461)
T ss_pred ------EEEEEeCEEEEecCCccc
Confidence 047899999999996654
No 323
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.07 E-value=4.1e-06 Score=84.81 Aligned_cols=38 Identities=42% Similarity=0.657 Sum_probs=35.5
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
+||+|||||+|||++|+.|++. |.+|+|+|++..+|+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~------G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL------NKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCCCCCc
Confidence 6999999999999999999999 9999999999888764
No 324
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.06 E-value=4e-06 Score=89.52 Aligned_cols=63 Identities=8% Similarity=0.051 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14496 130 LSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 130 r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
-..|.+.|.+.+++.|++|+++++|++|..+ ++++.+|.+.+.+ +| .+.++.||.||.+...+
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~---~~-------~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSR---KQ-------EDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCC---CC-------ceEEEECCEEEECCCHH
Confidence 3578888999998899999999999999875 4555666653310 01 01478999999988764
No 325
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.06 E-value=1.9e-05 Score=82.37 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=32.0
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~ 63 (561)
.+.+|||||||.||+++|..|.+. +++|+|||+.+..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~------~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPK------KYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcC------CCeEEEEcCCCCc
Confidence 346899999999999999999766 8999999987653
No 326
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=98.04 E-value=2.3e-06 Score=69.56 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=42.8
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeE
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
+.+.|+. ++.|+.+||.+++.+... +...+.++...|+.||.|..+||.++|+-
T Consensus 32 ~~~~C~~------C~~C~~~CP~~~i~~~~~--g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~ 85 (101)
T TIGR00402 32 FSAVCTR------CGECASACENNILQLGQQ--GQPTVEFDNAECDFCGKCAEACPTNAFHP 85 (101)
T ss_pred CcCcCcC------hhHHHHHcCcccceeccC--CceeeEecCccCcCccChhhHCCccccCc
Confidence 3467876 467999999999776532 22357889999999999999999999963
No 327
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=98.04 E-value=2.3e-06 Score=82.14 Aligned_cols=60 Identities=10% Similarity=0.170 Sum_probs=44.8
Q ss_pred ceEEcCCCCcccccccccccccccccCCee-EEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 481 HLILKNKKIPIHINFSIYAGPEARYCPAGV-YEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 481 h~~~~~~~~c~~~~~~~~~~~c~~~CP~~~-~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+...|++.|.+ |+.|.++||.++ ++....+ .....+|...|+.||.|..+||.+||+++
T Consensus 194 ~i~~~~~~~C~~------C~~C~~vCP~~~vl~~~~~~--~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 194 KIAASDREKCTN------CMDCFNVCPEPQVLRMPLKK--GGSTLVLSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred EEEeeccccCeE------cCCccCcCCCCceeeccccC--CCceEeccccccchhHHHHhCCccccccc
Confidence 334445788987 567999999985 3332211 12456788999999999999999999985
No 328
>PRK06370 mercuric reductase; Validated
Probab=98.02 E-value=6e-05 Score=79.78 Aligned_cols=102 Identities=23% Similarity=0.297 Sum_probs=73.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+....
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~~~---------------------------------- 210 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRF------GSEVTVIERGPRLLPRE---------------------------------- 210 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCCCccc----------------------------------
Confidence 46899999999999999999999 99999999876542100
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. .++.+.+.+.+++.|++++++++|.++..++++..+.+...+
T Consensus 211 ---------------~-------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~--------- 253 (463)
T PRK06370 211 ---------------D-------------EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNG--------- 253 (463)
T ss_pred ---------------C-------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCC---------
Confidence 0 023344666667789999999999999764333222222111
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++.++.+|.||.|.|....
T Consensus 254 -----~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 254 -----GAPEITGSHILVAVGRVPN 272 (463)
T ss_pred -----CceEEEeCEEEECcCCCcC
Confidence 1347999999999996544
No 329
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.02 E-value=0.0005 Score=70.36 Aligned_cols=99 Identities=22% Similarity=0.365 Sum_probs=65.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
.+|+|||||++|+-+|..|++..++.....+|+|+. .+.+...
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l~~------------------------------------ 188 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLLPG------------------------------------ 188 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccccc------------------------------------
Confidence 489999999999999999986422111125788882 2211000
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
++ ..+...+.+.+++.||+++.+++++++. ++ .|.+
T Consensus 189 -------------~~-------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~---~v~~------------ 224 (364)
T TIGR03169 189 -------------FP-------------AKVRRLVLRLLARRGIEVHEGAPVTRGP---DG---ALIL------------ 224 (364)
T ss_pred -------------CC-------------HHHHHHHHHHHHHCCCEEEeCCeeEEEc---CC---eEEe------------
Confidence 00 0233455666777899999999998874 22 2444
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++|.++.+|.||.|.|....
T Consensus 225 ---~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 225 ---ADGRTLPADAILWATGARAP 244 (364)
T ss_pred ---CCCCEEecCEEEEccCCChh
Confidence 23568999999999996653
No 330
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.01 E-value=5.6e-05 Score=84.81 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=78.0
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
..|+|||||+.|+-+|..|++. |.+|+|+|+.+.+-.. .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~------G~~Vtvv~~~~~ll~~--------------~--------------------- 179 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL------GMDVSVIHHAPGLMAK--------------Q--------------------- 179 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEccCCchhhh--------------h---------------------
Confidence 4799999999999999999999 9999999986543110 0
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
++ ..+.+.+.+.+++.||++++++.++++.. ++.+.+|.+
T Consensus 180 --------ld------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~------------ 219 (785)
T TIGR02374 180 --------LD------------------QTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRF------------ 219 (785)
T ss_pred --------cC------------------HHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEE------------
Confidence 00 02334466666778999999999998864 344455555
Q ss_pred cccccCeEEecCEEEEccCCCchhhHHHHHHcCC
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNL 216 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~ 216 (561)
++|.++.+|+||.|.|..... .+.+..++
T Consensus 220 ---~dG~~i~~D~Vi~a~G~~Pn~--~la~~~gl 248 (785)
T TIGR02374 220 ---KDGSSLEADLIVMAAGIRPND--ELAVSAGI 248 (785)
T ss_pred ---CCCCEEEcCEEEECCCCCcCc--HHHHhcCC
Confidence 346789999999999987653 24444444
No 331
>PRK13409 putative ATPase RIL; Provisional
Probab=98.01 E-value=3e-06 Score=91.42 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=47.0
Q ss_pred eEEcCCCCcccc-cccccccccccccCC-----eeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee-EECCC
Q psy14496 482 LILKNKKIPIHI-NFSIYAGPEARYCPA-----GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE-WITPE 551 (561)
Q Consensus 482 ~~~~~~~~c~~~-~~~~~~~~c~~~CP~-----~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~-~~~p~ 551 (561)
|-|+|.+.|.-. | .--|..+||. .|++++++ .++.+++++-|++||.|+.+||++||+ -+.|+
T Consensus 4 ~~~~~~~~c~~~~c----~~~c~~~cp~~~~~~~~~~~~~~---~~~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p~ 73 (590)
T PRK13409 4 IAVVDYDRCQPKKC----NYECIKYCPVVRTGEETIEIDED---DGKPVISEELCIGCGICVKKCPFDAISIVNLPE 73 (590)
T ss_pred EEEeeccccCcchh----hhhHHhhCCCcccCCeEEEEcCC---CCCceeeHhhccccccccccCCcceEEEeeCch
Confidence 445566655321 2 3459999995 57777543 247899999999999999999999998 66665
No 332
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=98.01 E-value=1.7e-06 Score=47.35 Aligned_cols=21 Identities=29% Similarity=0.846 Sum_probs=19.1
Q ss_pred EEEEccCCCccCCcccccCCC
Q psy14496 522 HLQINAQNCIHCKTCDIKDPT 542 (561)
Q Consensus 522 ~~~~~~~~C~~Cg~C~~~cp~ 542 (561)
.+.+|.++|++|++|..+||.
T Consensus 2 ~~~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 2 GMVIDLERCIGCGACEVACPV 22 (22)
T ss_pred ceEEccccccCchhHHHhhCc
Confidence 478999999999999999983
No 333
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.01 E-value=6.5e-05 Score=79.55 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=72.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+... +
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------------------~---------------- 205 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARL------GSEVTILQRSDRLLPR------------------E---------------- 205 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCcCCCc------------------c----------------
Confidence 36899999999999999999999 9999999987653110 0
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+ ..+...+.+.+++.||+++++++|+++..+++ ...|.+.. ++
T Consensus 206 ----------d------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~~~v~~~~-----~~-- 248 (463)
T TIGR02053 206 ----------E------------------PEISAAVEEALAEEGIEVVTSAQVKAVSVRGG--GKIITVEK-----PG-- 248 (463)
T ss_pred ----------C------------------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC--EEEEEEEe-----CC--
Confidence 0 02334455666678999999999999976422 23344321 00
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++.++.+|.||.|.|....
T Consensus 249 -----~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 249 -----GQGEVEADELLVATGRRPN 267 (463)
T ss_pred -----CceEEEeCEEEEeECCCcC
Confidence 1257999999999996544
No 334
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.00 E-value=8.6e-05 Score=78.24 Aligned_cols=98 Identities=17% Similarity=0.298 Sum_probs=73.4
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-+|+|||||++|+-+|..|++. |.+|+++++.+.+-...
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~~----------------------------------- 188 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL------GKNVRIIQLEDRILPDS----------------------------------- 188 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCcEEEEeCCcccCchh-----------------------------------
Confidence 5799999999999999999999 99999998765421100
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
++ ..+.+.+.+.+++.|++++++++++++.. ++.+..+.+.
T Consensus 189 -------------~~-------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~----------- 229 (444)
T PRK09564 189 -------------FD-------------KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTD----------- 229 (444)
T ss_pred -------------cC-------------HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeC-----------
Confidence 00 13455677777788999999999999953 3444445442
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+.++.+|.||.|.|....
T Consensus 230 -----~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 230 -----KGEYEADVVIVATGVKPN 247 (444)
T ss_pred -----CCEEEcCEEEECcCCCcC
Confidence 247999999999997654
No 335
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.00 E-value=6.1e-05 Score=78.05 Aligned_cols=104 Identities=23% Similarity=0.344 Sum_probs=78.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...-.++|||||+.|+=.|..++++ |.+|+|+|+.+.+-. .+
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~L------G~~VTiie~~~~iLp------------------~~-------------- 212 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAAL------GSKVTVVERGDRILP------------------GE-------------- 212 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCC------------------cC--------------
Confidence 4567899999999999999999999 999999999876521 00
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+ .++.+.+.+.+++.|++++.+++++.+..++++ +.|.+.+ |
T Consensus 213 ------------D------------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~------g 254 (454)
T COG1249 213 ------------D------------------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLED------G 254 (454)
T ss_pred ------------C------------------HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEec------C
Confidence 0 145566777777778999999999999875443 4455432 1
Q ss_pred ceecccccCeEEecCEEEEccCCCchh
Q psy14496 180 IIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
. +.++++|.|+.|.|+...+
T Consensus 255 ~-------~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 255 E-------GGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred C-------CCEEEeeEEEEccCCccCC
Confidence 1 1278999999999976554
No 336
>PLN02576 protoporphyrinogen oxidase
Probab=97.99 E-value=7e-06 Score=87.79 Aligned_cols=43 Identities=35% Similarity=0.489 Sum_probs=37.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
.++||+|||||++||++|+.|++.. |++|+|+|+++.+|+.+.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~-----g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKH-----GVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhc-----CCCEEEEecCCCCCCcee
Confidence 3469999999999999999998871 699999999999998754
No 337
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.99 E-value=5.1e-05 Score=80.30 Aligned_cols=99 Identities=17% Similarity=0.270 Sum_probs=73.7
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+... +
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~---------------------------- 214 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAAL------GVKVTLINTRDRLLSF------L---------------------------- 214 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCCc------C----------------------------
Confidence 36899999999999999999999 9999999987654210 0
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. .++.+.|.+.+++.|+++++++.|+++..++++ +.+.+
T Consensus 215 ---------------d-------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~----------- 253 (461)
T PRK05249 215 ---------------D-------------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG--VIVHL----------- 253 (461)
T ss_pred ---------------C-------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe--EEEEE-----------
Confidence 0 024455666677789999999999999754332 23333
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.+|.++++|.||.|.|....
T Consensus 254 ----~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 254 ----KSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred ----CCCCEEEeCEEEEeecCCcc
Confidence 23457999999999996654
No 338
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.99 E-value=7.3e-05 Score=78.53 Aligned_cols=98 Identities=22% Similarity=0.246 Sum_probs=71.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||++|+.+|..|++. |.+|+|+|+.+.+....
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~~---------------------------------- 196 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKL------GSKVTVLDAASTILPRE---------------------------------- 196 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCccCCCC----------------------------------
Confidence 35799999999999999999999 99999999976541100
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
...+.+.+.+.+++.|++++.+++|+++..+ ++.+ .+..
T Consensus 197 ----------------------------~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v-~v~~----------- 235 (438)
T PRK07251 197 ----------------------------EPSVAALAKQYMEEDGITFLLNAHTTEVKND-GDQV-LVVT----------- 235 (438)
T ss_pred ----------------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEE-EEEE-----------
Confidence 0023344556667789999999999999753 3322 2322
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 236 -----~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 236 -----EDETYRFDALLYATGRKPN 254 (438)
T ss_pred -----CCeEEEcCEEEEeeCCCCC
Confidence 1357999999999996644
No 339
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.99 E-value=6.8e-05 Score=79.37 Aligned_cols=102 Identities=20% Similarity=0.312 Sum_probs=73.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+... +
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~---------------------------- 211 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASL------GAEVTIVEALPRILPG------E---------------------------- 211 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCcCCc------C----------------------------
Confidence 35899999999999999999999 9999999987654110 0
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. ..+.+.+.+.+++.|++++.+++|+++..+++ . +.+.+.+ +|+
T Consensus 212 ---------------~-------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~-v~v~~~~-----gg~- 255 (462)
T PRK06416 212 ---------------D-------------KEISKLAERALKKRGIKIKTGAKAKKVEQTDD-G-VTVTLED-----GGK- 255 (462)
T ss_pred ---------------C-------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-E-EEEEEEe-----CCe-
Confidence 0 12344566667778999999999999976432 2 3344321 011
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++.+|.||.|.|....
T Consensus 256 ------~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 256 ------EETLEADYVLVAVGRRPN 273 (462)
T ss_pred ------eEEEEeCEEEEeeCCccC
Confidence 047899999999996544
No 340
>PRK06116 glutathione reductase; Validated
Probab=97.98 E-value=8.4e-05 Score=78.40 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=74.2
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+++++.+.+...
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~------g~~Vtlv~~~~~~l~~----------------------------------- 205 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGL------GSETHLFVRGDAPLRG----------------------------------- 205 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCccc-----------------------------------
Confidence 46899999999999999999999 9999999987643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. . .++.+.+.+.+++.|++++.+++|.++..++++. +.|.+.
T Consensus 206 ---------~-----~-------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~-~~v~~~---------- 247 (450)
T PRK06116 206 ---------F-----D-------------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGS-LTLTLE---------- 247 (450)
T ss_pred ---------c-----C-------------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCce-EEEEEc----------
Confidence 0 0 0234456666777899999999999997653432 234442
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 248 -----~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 248 -----DGETLTVDCLIWAIGREPN 266 (450)
T ss_pred -----CCcEEEeCEEEEeeCCCcC
Confidence 3567999999999996543
No 341
>PRK09898 hypothetical protein; Provisional
Probab=97.97 E-value=7e-06 Score=76.38 Aligned_cols=56 Identities=14% Similarity=0.300 Sum_probs=45.2
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+...|..|. ..+|+.+||.+++.+.+. . ..+.+|.++|++|+.|..+||.++|.+.
T Consensus 119 ~~~~C~~C~----~~~C~~~CP~gAi~~~~~-~--g~v~vd~~~CigC~~C~~aCP~~ai~~~ 174 (208)
T PRK09898 119 TADTCRQCK----EPQCMNVCPIGAITWQQK-E--GCITVDHKRCIGCSACTTACPWMMATVN 174 (208)
T ss_pred eCccCCCcc----CcchhhhCCcceEEeecc-C--CeEEeccccCCCcCcccccCCCCCCEec
Confidence 566788753 358999999999886542 1 2678999999999999999999999874
No 342
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.96 E-value=4.8e-06 Score=79.44 Aligned_cols=74 Identities=16% Similarity=0.350 Sum_probs=52.3
Q ss_pred cCCCCcccccccccccccccccCC--eeEEEEeecC---c---eeEEEEccCCCccCCcccccCCCC--CeeEEC---CC
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPA--GVYEFIIEKN---K---IQHLQINAQNCIHCKTCDIKDPTQ--NIEWIT---PE 551 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~--~~~~~~~~~~---~---~~~~~~~~~~C~~Cg~C~~~cp~~--~i~~~~---p~ 551 (561)
+|.+.|..- ....|+.|+++||. +++++....+ + .....+|.+.|++||.|..+||++ ||+..+ -.
T Consensus 134 id~~~Ci~~-~~~~C~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~~~AI~v~p~~~~~ 212 (254)
T PRK09476 134 VDQENCLNF-QGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLEKAAIKVLPRSLAK 212 (254)
T ss_pred cchhhcccc-CCCchHHHhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCCcceEEEehhhhhc
Confidence 788889731 01115789999996 8998864321 1 123678999999999999999998 888632 22
Q ss_pred CCCCCCCC
Q psy14496 552 GGSGTNYP 559 (561)
Q Consensus 552 g~~g~~~~ 559 (561)
|..|-.|+
T Consensus 213 g~~g~~~~ 220 (254)
T PRK09476 213 GKLGHHYR 220 (254)
T ss_pred cccccCcc
Confidence 66666665
No 343
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.96 E-value=0.00011 Score=76.88 Aligned_cols=97 Identities=15% Similarity=0.258 Sum_probs=71.8
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-+|+|||||++|+-+|..|++. |.+|+++++.+.+....
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~~~~~----------------------------------- 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER------GKNVTLIHRSERILNKL----------------------------------- 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCcccCccc-----------------------------------
Confidence 5899999999999999999999 99999999876531000
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
. + ..+.+.+.+.+++.||++++++.|.++..+ +.+ +.+.
T Consensus 177 --------~-----~-------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~----------- 215 (427)
T TIGR03385 177 --------F-----D-------------EEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFT----------- 215 (427)
T ss_pred --------c-----C-------------HHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEc-----------
Confidence 0 0 123445666677789999999999998642 332 2332
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 216 ----~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 216 ----SGGVYQADMVILATGIKPN 234 (427)
T ss_pred ----CCCEEEeCEEEECCCccCC
Confidence 2458999999999997755
No 344
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=97.96 E-value=3.2e-06 Score=75.57 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=42.6
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeec------CceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEK------NKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~------~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+.+.|+. |+.|+.+||.+++.+.... .....+.+|...|+.||.|..+||.+||++.
T Consensus 56 ~~~~~Ci~------Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~ 119 (167)
T CHL00014 56 FEFDKCIA------CEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMT 119 (167)
T ss_pred eccccCCC------cCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecC
Confidence 35678988 5679999999875432110 0012466788999999999999999999763
No 345
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=97.96 E-value=2.7e-06 Score=79.63 Aligned_cols=49 Identities=20% Similarity=0.461 Sum_probs=42.6
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
.+..|.. |+.|+.+||.++++..+ .+.||++.|+.|+-|-.+||+++++
T Consensus 191 ~e~kc~~------c~~cv~~cp~~Ai~~~~------~~~I~~~~ci~c~~c~~ac~~gav~ 239 (354)
T COG2768 191 VEEKCYD------CGLCVKICPVGAITLTK------VVKIDYEKCIGCGQCMEACPYGAVD 239 (354)
T ss_pred eeecccc------cchhhhhCCCcceeccc------ceeechhhccchhhhhhhccCcccc
Confidence 4466877 56799999999988652 5899999999999999999999986
No 346
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=9.7e-05 Score=78.13 Aligned_cols=104 Identities=17% Similarity=0.237 Sum_probs=72.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~------G~~Vtlie~~~~il~~----------------------------------- 212 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRL------GAQVTVVEYLDRICPG----------------------------------- 212 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCCCCCC-----------------------------------
Confidence 46899999999999999999999 9999999986643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.+ ..+.+.+.+.+++.||+++++++|+++..++++..+.+...+ +|
T Consensus 213 ---------~d------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~-----~g-- 258 (466)
T PRK06115 213 ---------TD------------------TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAA-----GG-- 258 (466)
T ss_pred ---------CC------------------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcC-----CC--
Confidence 00 023345666677789999999999999754333222222111 11
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++.++.+|.||.|.|....
T Consensus 259 -----~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 259 -----AAETLQADYVLVAIGRRPY 277 (466)
T ss_pred -----ceeEEEeCEEEEccCCccc
Confidence 1357999999999996543
No 347
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=97.95 E-value=4e-06 Score=81.32 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=43.0
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++..|++.|.. |+.|.++||.++.......+......++...|+.||.|..+||++||+++
T Consensus 202 i~~~d~~~C~~------C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 202 VKAHDRQKCTR------CMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred cccCCcccCcc------cCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCccceeec
Confidence 33357788987 56799999998632210101111234788999999999999999999874
No 348
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.94 E-value=4.4e-06 Score=82.19 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=46.1
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
....|.+|. +.+|+.+||.+++...+. . ..+.+|.+.|++|+.|..+||.++|++++
T Consensus 108 ~~~~C~hC~----~p~Cv~aCP~gAi~k~~~-~--g~V~id~dkCigCg~Cv~aCP~gai~~~~ 164 (328)
T PRK10882 108 IKKQCMHCV----DPNCVSVCPVSALTKDPK-T--GIVHYDKDVCTGCRYCMVACPFNVPKYDY 164 (328)
T ss_pred ccccCCCcC----chhhHhhCCCCCEEeccc-C--CcccCCHHHcCcccHHHHhCCccceeccc
Confidence 456788854 458999999999887532 1 35788999999999999999999998654
No 349
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=97.93 E-value=4.1e-06 Score=86.29 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=49.1
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCCCCCCCCC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPEGGSGTNY 558 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g~~g~~~ 558 (561)
++|.+.|+. |+.|+.+||.+++...+ ..+.+|.+.|..|+.|...||.++|+. ......|..|
T Consensus 6 ~id~~~Ci~------C~~C~~~CP~~ai~~~~-----~~~~i~~~~C~~C~~C~~~CP~~AI~~-~~~~~~~~~~ 68 (411)
T TIGR03224 6 LIDPEICIR------CNTCEETCPIDAITHDD-----RNYVVKADVCNGCMACVSPCPTGAIDN-WRTMLRAKAY 68 (411)
T ss_pred eeCcccCcC------ccchhhhCCcccEeccC-----CceEeCcccCcCHHHHHhhcCccccee-cccccccccc
Confidence 358899988 56799999999987643 246789999999999999999999985 3333344444
No 350
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.92 E-value=0.00013 Score=76.84 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=73.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~il~~----------------------------------- 204 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGL------GSETHLVIRHERVLRS----------------------------------- 204 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCcc-----------------------------------
Confidence 35899999999999999999999 9999999988654210
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+ + ..+.+.+.+.+++.||++++++.++++..++++ ...|.+.
T Consensus 205 ---------~-----d-------------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~-~~~v~~~---------- 246 (450)
T TIGR01421 205 ---------F-----D-------------SMISETITEEYEKEGINVHKLSKPVKVEKTVEG-KLVIHFE---------- 246 (450)
T ss_pred ---------c-----C-------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCc-eEEEEEC----------
Confidence 0 0 023445666667789999999999999754333 2334442
Q ss_pred ecccccC-eEEecCEEEEccCCCch
Q psy14496 182 KKNFQLG-MELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g-~~i~ad~vV~AdG~~s~ 205 (561)
+| .++.+|.||.|.|....
T Consensus 247 -----~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 247 -----DGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred -----CCcEEEEcCEEEEeeCCCcC
Confidence 23 46999999999996543
No 351
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.92 E-value=0.0033 Score=67.52 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=59.2
Q ss_pred EEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 126 YIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++...+...|.+.+.+.|++++.+++|+++..+ ++.+++|++.+. .+|+ ..+++|+.||.|+|.++.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~---~~g~-------~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDH---KTGE-------EERIEAQVVINAAGIWAG 191 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEc---CCCc-------EEEEEcCEEEECCCcchH
Confidence 47899999999999999999999999999999874 566777776431 1121 247999999999998876
Q ss_pred hhHHHHHHcCCC
Q psy14496 206 LSKQIIKKFNLD 217 (561)
Q Consensus 206 ~~~~l~~~~g~~ 217 (561)
.+.+..|.+
T Consensus 192 ---~l~~~~g~~ 200 (516)
T TIGR03377 192 ---RIAEYAGLD 200 (516)
T ss_pred ---HHHHhcCCC
Confidence 333335553
No 352
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=97.91 E-value=5.2e-06 Score=75.56 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=43.5
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 487 ~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
...|..|. +.+|+.+||.+++.... ..+.+|+++|++|+.|..+||+++|++.
T Consensus 55 ~~~C~~C~----~~~C~~~Cp~~ai~~~~-----~~v~i~~~~C~~C~~C~~~CP~~ai~~~ 107 (181)
T PRK10330 55 ATVCRQCE----DAPCANVCPNGAISRDK-----GFVHVMQERCIGCKTCVVACPYGAMEVV 107 (181)
T ss_pred CCcCcCcC----CcHHHHHcCcccEEccC-----CeEEeChhhCCCcchhhhhCCccCeEee
Confidence 35677754 45899999999987642 2477899999999999999999999874
No 353
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=0.0001 Score=77.85 Aligned_cols=100 Identities=25% Similarity=0.329 Sum_probs=71.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~ll~~----------------------------------- 208 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRL------GTKVTIVEMAPQLLPG----------------------------------- 208 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCcc-----------------------------------
Confidence 35899999999999999999999 9999999987653110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. -.++.+.+.+.+++.|++++++++|+++..+ +. .+.+... |+
T Consensus 209 ---------~------------------d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~-~v~~~~~-------g~- 251 (458)
T PRK06912 209 ---------E------------------DEDIAHILREKLENDGVKIFTGAALKGLNSY-KK-QALFEYE-------GS- 251 (458)
T ss_pred ---------c------------------cHHHHHHHHHHHHHCCCEEEECCEEEEEEEc-CC-EEEEEEC-------Cc-
Confidence 0 0124455666777789999999999998653 22 2222221 11
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++.+|.||.|+|....
T Consensus 252 ------~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 252 ------IQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred ------eEEEEeCEEEEecCCccC
Confidence 136899999999996554
No 354
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.91 E-value=0.00013 Score=77.37 Aligned_cols=103 Identities=21% Similarity=0.322 Sum_probs=72.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+-.. +
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~------G~~Vtlv~~~~~~l~~------------------~---------------- 211 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNY------GVDVTIVEFLDRALPN------------------E---------------- 211 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCcCCc------------------c----------------
Confidence 35899999999999999999999 9999999976543110 0
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+ .++.+.+.+.+++.||+++++++|+++..+ ++ .+.+.+.. .+|+
T Consensus 212 ---------------------------d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~----~~g~- 256 (466)
T PRK07818 212 ---------------------------D-AEVSKEIAKQYKKLGVKILTGTKVESIDDN-GS-KVTVTVSK----KDGK- 256 (466)
T ss_pred ---------------------------C-HHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CC-eEEEEEEe----cCCC-
Confidence 0 123445666777789999999999999753 22 23343320 1121
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++.+|.||.|.|....
T Consensus 257 ------~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 257 ------AQELEADKVLQAIGFAPR 274 (466)
T ss_pred ------eEEEEeCEEEECcCcccC
Confidence 147999999999996544
No 355
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=97.90 E-value=6.9e-06 Score=73.23 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=45.5
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14496 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 487 ~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
...|..|. ...|+.+||.+++..... + ..+.+|+++|+.|+.|..+||.++|.|...
T Consensus 61 ~~~C~~C~----~~~C~~~CP~~ai~~~~~-~--~~~~i~~~~C~~C~~C~~aCP~~ai~~~~~ 117 (161)
T TIGR02951 61 SISCNHCA----DPACVKNCPTGAMYKREE-D--GLVLVDQDKCIGCRYCVWACPYGAPQYDPQ 117 (161)
T ss_pred CccCCCcC----CcchHHhCCCCCEEeecC-C--CcEEECHHhCCCchHHHhhCCCCCcEEcCC
Confidence 56787743 348999999999875421 1 368899999999999999999999999644
No 356
>PRK07118 ferredoxin; Validated
Probab=97.89 E-value=5.4e-06 Score=80.24 Aligned_cols=54 Identities=26% Similarity=0.432 Sum_probs=45.6
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCC
Q psy14496 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPE 551 (561)
Q Consensus 487 ~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~ 551 (561)
...|+. ++.|+.+||.+++++.+ ...++|+++|+.||.|..+||+++|.|.-.+
T Consensus 212 ~~~Ci~------Cg~Cv~~CP~~AI~~~~-----~~~vId~~~C~~Cg~C~~~CP~~AI~~~~~~ 265 (280)
T PRK07118 212 EVGCIG------CGKCVKACPAGAITMEN-----NLAVIDQEKCTSCGKCVEKCPTKAIRILNKP 265 (280)
T ss_pred cccccc------chHHHhhCCcCcEEEeC-----CcEEEcCCcCCCHHHHHHhCCccccEeeccc
Confidence 455766 57899999999999864 2578899999999999999999999986444
No 357
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.89 E-value=0.00013 Score=76.83 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=71.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~~----------------------------------- 204 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGL------GVQVTLIYRGELILRG----------------------------------- 204 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEeCCCCCcc-----------------------------------
Confidence 35799999999999999999999 9999999986543110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. . .++.+.+.+.+++.|++++++++|+++..++++ ..|.+.
T Consensus 205 ---------~-----d-------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~---------- 245 (446)
T TIGR01424 205 ---------F-----D-------------DDMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLS---------- 245 (446)
T ss_pred ---------c-----C-------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEc----------
Confidence 0 0 023344566667789999999999999764333 234432
Q ss_pred ecccccCeEEecCEEEEccCCCc
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
+|.++.+|.||.|.|...
T Consensus 246 -----~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 246 -----HGEEIVADVVLFATGRSP 263 (446)
T ss_pred -----CCcEeecCEEEEeeCCCc
Confidence 245799999999999543
No 358
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=97.88 E-value=4.9e-06 Score=78.89 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=43.9
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
+|.+.|.. |+.|+.+||.+++.+.+. ...+|.+.|..||.|...||.++|+.
T Consensus 145 id~~~C~~------C~~C~~~CP~~ai~~~~~-----~~~i~~~~C~~Cg~C~~~CP~~AI~~ 196 (234)
T TIGR02700 145 IDRKRCKG------CGICVDACPRSAIDMVDG-----KAFIRLLKCVGCGKCKEACPYNAIHG 196 (234)
T ss_pred EChhHCcC------cchHHHhCCcccEEecCC-----ceEEchhhCCccchHHhhCCCCceec
Confidence 36678877 567999999999887542 46889999999999999999999974
No 359
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.88 E-value=1.1e-05 Score=74.88 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=46.4
Q ss_pred cCCCCcccccccccccccccccCC--eeEEEEeecCc---eeEEEEccCCCccCCcccccCCCC--CeeEECC
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPA--GVYEFIIEKNK---IQHLQINAQNCIHCKTCDIKDPTQ--NIEWITP 550 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~--~~~~~~~~~~~---~~~~~~~~~~C~~Cg~C~~~cp~~--~i~~~~p 550 (561)
+|.+.|..- ...-++.|+++||. ++|++....+. ....++|++.|++||.|..+||++ ||+...-
T Consensus 128 id~~~C~~~-~g~~C~~C~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~~~ 199 (213)
T TIGR00397 128 VGHETCLNY-KGLNCSICVRVCPIRGEAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVLPR 199 (213)
T ss_pred ECCCCcccC-CCCCcccchhhCCCCcceEEEecccccCCcccceEEecccCCCcchhhHhCCCCCCeEEEeeh
Confidence 577888721 11126789999998 78887542211 124688999999999999999986 7776443
No 360
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.87 E-value=0.00012 Score=76.23 Aligned_cols=102 Identities=24% Similarity=0.404 Sum_probs=77.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
..+|+|||+|++||.+|..|++. |++|+|+|+.+.+++...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~------G~~v~l~e~~~~~~~~~~--------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR------GKKVTLIEAADRLGGQLL--------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEcccccchhhh---------------------------------
Confidence 36999999999999999999999 999999999988754210
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEE-EEecccccccCCc
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCG-IATNNFGINKEGI 180 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~-V~~~~~~~~~~g~ 180 (561)
. ..+.+.+.+..++.||+++.++.+.+++...+..... +..
T Consensus 177 -----------------------~-----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~---------- 218 (415)
T COG0446 177 -----------------------D-----PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVG---------- 218 (415)
T ss_pred -----------------------h-----HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEE----------
Confidence 0 1355667777778899999999999997643221111 222
Q ss_pred eecccccCeEEecCEEEEccCCCch
Q psy14496 181 IKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.++..+.+|+++.+.|.+..
T Consensus 219 -----~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 219 -----IDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred -----eCCcEEEeeEEEEeeccccc
Confidence 23568999999999997664
No 361
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=97.87 E-value=5.3e-06 Score=82.54 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=43.6
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEE--eec--Cc----eeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFI--IEK--NK----IQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~--~~~--~~----~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+.|.+.|+. |+.|+.+||.+++... ... .+ ...+.+|+..|..||.|..+||++||++.
T Consensus 243 ~id~~~Ci~------C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 243 VIDHSKCIM------CRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred EECcccCcC------cccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEec
Confidence 458899988 5679999999986421 110 00 12345688999999999999999999983
No 362
>KOG0399|consensus
Probab=97.85 E-value=3.9e-05 Score=83.54 Aligned_cols=42 Identities=31% Similarity=0.563 Sum_probs=38.1
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
....|+|||+|||||++|-+|-+. |+.|+|+||...+|+-+.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~------gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKA------GHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhc------CcEEEEEEecCCcCceee
Confidence 358999999999999999999999 999999999999877443
No 363
>PLN02785 Protein HOTHEAD
Probab=97.85 E-value=0.00026 Score=76.45 Aligned_cols=36 Identities=39% Similarity=0.694 Sum_probs=32.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
...||+||||||.||+.+|..|++ +.+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-------~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-------NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-------CCcEEEEecCCC
Confidence 446999999999999999999987 379999999864
No 364
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.85 E-value=0.00017 Score=76.21 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=72.4
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-.|+|||+|+.|+-+|..|++. |.+|+|+++.+.+....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~------g~~Vtli~~~~~~l~~~----------------------------------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL------GVKVTLVSSRDRVLPGE----------------------------------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCcCCCCC-----------------------------------
Confidence 5799999999999999999999 99999999876532100
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
+ ..+...+.+.+++.||+++.+++++++..++++ +.|.+.
T Consensus 217 ---------d------------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~----------- 256 (466)
T PRK07845 217 ---------D------------------ADAAEVLEEVFARRGMTVLKRSRAESVERTGDG--VVVTLT----------- 256 (466)
T ss_pred ---------C------------------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCE--EEEEEC-----------
Confidence 0 023344566666789999999999999754332 234432
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 257 ----~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 257 ----DGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred ----CCcEEEecEEEEeecCCcC
Confidence 3567999999999997654
No 365
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=1.9e-05 Score=75.30 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=36.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
.+|++|||||.+|+.+|..|+++ |.+|.|+||++..||.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~------gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL------GKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc------CCEEEEEeccccCCCc
Confidence 48999999999999999999999 9999999999999875
No 366
>KOG1276|consensus
Probab=97.84 E-value=2.2e-05 Score=77.61 Aligned_cols=46 Identities=37% Similarity=0.554 Sum_probs=39.5
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~ 69 (561)
.+..+|+|||||++||++|+.|+++ .|...|+|+|+.+..|+-+.+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~----~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARL----GPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhc----CCCceEEEEecCCcccceeee
Confidence 5678999999999999999999999 344556779999999987665
No 367
>KOG2311|consensus
Probab=97.83 E-value=5.5e-05 Score=75.59 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=32.6
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~ 61 (561)
+..|||+|||||-||.-+|.+.++. |-+.+++-..-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~------Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL------GARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc------CCceEEeeccc
Confidence 5679999999999999999999999 99999987653
No 368
>PLN02507 glutathione reductase
Probab=97.83 E-value=0.00015 Score=77.21 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=72.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+++.+.+-.. ++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~~l~~------~d--------------------------- 243 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGM------GATVDLFFRKELPLRG------FD--------------------------- 243 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEecCCcCcc------cC---------------------------
Confidence 35899999999999999999999 9999999987643110 00
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.++.+.+.+.+++.||+++.+++|+++..++++ +.|.+
T Consensus 244 -----------------------------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~----------- 281 (499)
T PLN02507 244 -----------------------------DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVIT----------- 281 (499)
T ss_pred -----------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEE-----------
Confidence 023445666667789999999999999754222 23433
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.+|.++.+|.||.|.|....
T Consensus 282 ----~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 282 ----DHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred ----CCCcEEEcCEEEEeecCCCC
Confidence 23567999999999996654
No 369
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.82 E-value=8.3e-05 Score=75.23 Aligned_cols=38 Identities=32% Similarity=0.592 Sum_probs=33.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
++..|||||||.+||.+|..|.+.. ++.+|+++|++..
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~----~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL----PDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC----CCCcEEEEeCCCc
Confidence 5678999999999999999999982 1599999999876
No 370
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.82 E-value=1.9e-05 Score=75.29 Aligned_cols=36 Identities=31% Similarity=0.727 Sum_probs=33.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
|+|||+|||||.|||+||+.|+++ |.++.|+.+...
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~------Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQA------GKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhc------CCcEEEEeCChh
Confidence 789999999999999999999999 999999987753
No 371
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=97.81 E-value=9.9e-06 Score=80.54 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=43.6
Q ss_pred EcCCCCcccccccccccccc--cccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCC
Q psy14496 484 LKNKKIPIHINFSIYAGPEA--RYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPE 551 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~--~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~ 551 (561)
..+.+.|.. |+.|+ .+||.+++.. + ..+|.+.|++|+.|..+||.+||+++.++
T Consensus 298 ~id~dkCi~------Cg~C~~~~aCPt~AI~~--~------~~Id~~~Ci~CGaCV~aCP~~AI~~~~~~ 353 (391)
T TIGR03287 298 KYNPERCEN------CDPCLVEEACPVPAIKK--D------GTLNTEDCFGCGYCAEICPGGAFEVNLGS 353 (391)
T ss_pred EEchhhCcC------CCCCcCCcCCCHhhEec--c------ceeChHhCcChHHHHhhCCccceEEeCCe
Confidence 357788987 46685 8999999762 1 25899999999999999999999987543
No 372
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.81 E-value=0.0002 Score=70.77 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=92.5
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhh-ccccc-cCCccccccch
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL-FPKEK-LNKLFNTPVIE 97 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l-~~~~~-~~~~~~~~~~~ 97 (561)
+..+|++.||-||+-|++|..|.... ++++..+||.+....| .|-++....|+-- +.++. ...|.. ..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~-----~~~~lFLerkp~F~WH--pGmllegstlQv~FlkDLVTl~~PTs---~y 72 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHS-----GLKSLFLERKPDFSWH--PGMLLEGSTLQVPFLKDLVTLVDPTS---PY 72 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhcccc-----CcceEEEecCCCCCcC--CCcccCCccccccchhhhccccCCCC---ch
Confidence 44699999999999999999998882 4889999999887554 3333333332211 11111 111111 01
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEE--EEeccccc
Q psy14496 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCG--IATNNFGI 175 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~--V~~~~~~~ 175 (561)
--+.++...+. +-.+ .+...+.+.|.++.+.+.=++... -.++++..|++|..-+.+.... |.+.
T Consensus 73 SFLNYL~~h~R--Ly~F------l~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~---- 139 (436)
T COG3486 73 SFLNYLHEHGR--LYEF------LNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTA---- 139 (436)
T ss_pred HHHHHHHHcch--Hhhh------hhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcC----
Confidence 11122332221 1111 123467788888888877766665 6788999999773322222222 4442
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCchhhH
Q psy14496 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSK 208 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~~~ 208 (561)
++...+|+-||++.|..-.+..
T Consensus 140 -----------~~~~y~ar~lVlg~G~~P~IP~ 161 (436)
T COG3486 140 -----------NGTVYRARNLVLGVGTQPYIPP 161 (436)
T ss_pred -----------CCcEEEeeeEEEccCCCcCCCh
Confidence 2457899999999997655543
No 373
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.80 E-value=0.00011 Score=74.49 Aligned_cols=102 Identities=25% Similarity=0.529 Sum_probs=71.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhcccc-------CCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcccc
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIK-------KNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNT 93 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~-------~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~ 93 (561)
...+|+||||||.|.=+|-.|+..... ....++|+|+|+.+..-.+
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~--------------------------- 206 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM--------------------------- 206 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC---------------------------
Confidence 346899999999999999998766321 1113689999988764211
Q ss_pred ccchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccc
Q psy14496 94 PVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNF 173 (561)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~ 173 (561)
++. ++.+...+.+++.||+++.++.|+++..+ +|.+.+
T Consensus 207 ----------------------~~~-------------~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~~- 244 (405)
T COG1252 207 ----------------------FPP-------------KLSKYAERALEKLGVEVLLGTPVTEVTPD------GVTLKD- 244 (405)
T ss_pred ----------------------CCH-------------HHHHHHHHHHHHCCCEEEcCCceEEECCC------cEEEcc-
Confidence 111 34455566667899999999999999642 344432
Q ss_pred ccccCCceecccccCe-EEecCEEEEccCCCch
Q psy14496 174 GINKEGIIKKNFQLGM-ELYAKYTLFAEGSRGH 205 (561)
Q Consensus 174 ~~~~~g~~~~~f~~g~-~i~ad~vV~AdG~~s~ 205 (561)
|. ++.++.+|-|.|.+..
T Consensus 245 --------------g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 245 --------------GEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred --------------CCeeEecCEEEEcCCCcCC
Confidence 33 5999999999997654
No 374
>PTZ00058 glutathione reductase; Provisional
Probab=97.80 E-value=0.00025 Score=76.07 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=72.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~------G~~Vtli~~~~~il~~----------------------------------- 275 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRL------GAESYIFARGNRLLRK----------------------------------- 275 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCcEEEEEeccccccc-----------------------------------
Confidence 45799999999999999999999 9999999987643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+ . .++.+.+.+.+++.||++++++.+.++..++++.+. +...+
T Consensus 276 ---------~-----d-------------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~--------- 318 (561)
T PTZ00058 276 ---------F-----D-------------ETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSD--------- 318 (561)
T ss_pred ---------C-----C-------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECC---------
Confidence 0 0 023344566667789999999999999754332222 22211
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++.++.+|.||.|.|....
T Consensus 319 -----~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 319 -----GRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred -----CCEEEECCEEEECcCCCCC
Confidence 1347999999999996544
No 375
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.79 E-value=0.00018 Score=75.53 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=70.6
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-+|+|||||+.|+-+|..|++. |.+|+|+++.+.+... +
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~~------~----------------------------- 187 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER------GLHPTLIHRSDKINKL------M----------------------------- 187 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEecccccchh------c-----------------------------
Confidence 5799999999999999999999 9999999987653110 0
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
. .++.+.+.+.+++.||+++++++|+++.. . .|.+
T Consensus 188 --------------d-------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~------------ 222 (438)
T PRK13512 188 --------------D-------------ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTF------------ 222 (438)
T ss_pred --------------C-------------HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEE------------
Confidence 0 02334566667778999999999999842 1 2333
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++|.++.+|.||.|.|....
T Consensus 223 ---~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 223 ---KSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred ---CCCCEEEeCEEEECcCCCcC
Confidence 23457899999999997655
No 376
>PLN02676 polyamine oxidase
Probab=97.79 E-value=2.7e-05 Score=82.42 Aligned_cols=41 Identities=41% Similarity=0.580 Sum_probs=37.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCC-cEEEEcCCCCCCCce
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~-~V~ViEk~~~~g~~~ 67 (561)
..+||+|||||++||++|+.|++. |+ +|+|+|++..+|+.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~------g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA------GIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc------CCCcEEEecCCCCCCCcc
Confidence 468999999999999999999999 98 699999999988764
No 377
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.79 E-value=0.00024 Score=75.39 Aligned_cols=103 Identities=19% Similarity=0.273 Sum_probs=73.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+... .
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~---------------------------- 222 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRL------GAEVTILEALPAFLAA------A---------------------------- 222 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCccCCc------C----------------------------
Confidence 35899999999999999999999 9999999987643110 0
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+ .++.+.+.+.+++.|++++.+++|+++..+++ . +.|...+ .+|+
T Consensus 223 ---------------------------d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~-v~v~~~~----~~g~- 267 (475)
T PRK06327 223 ---------------------------D-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-G-VSVAYTD----ADGE- 267 (475)
T ss_pred ---------------------------C-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-E-EEEEEEe----CCCc-
Confidence 0 12444556666678999999999999976432 2 3344322 1121
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
..++.+|.||.|.|....
T Consensus 268 ------~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 268 ------AQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred ------eeEEEcCEEEEccCCccC
Confidence 146899999999996544
No 378
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.78 E-value=0.0003 Score=76.64 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=72.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+... ++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~------G~eVTLIe~~~~ll~~------~d--------------------------- 352 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTAL------GSEVVSFEYSPQLLPL------LD--------------------------- 352 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhC------CCeEEEEeccCccccc------CC---------------------------
Confidence 35799999999999999999999 9999999987654210 00
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHH-HHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCc
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKA-ENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGI 180 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a-~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~ 180 (561)
.++.+.+.+.. ++.||+++.++.|+++..++++..+.|.+.+.....++.
T Consensus 353 -----------------------------~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~ 403 (659)
T PTZ00153 353 -----------------------------ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDG 403 (659)
T ss_pred -----------------------------HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccc
Confidence 01233344433 357999999999999976533332334432110000000
Q ss_pred eecccccCeEEecCEEEEccCCCch
Q psy14496 181 IKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
....+.+..++.+|.||.|.|....
T Consensus 404 ~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 404 PKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred cccccccceEEEcCEEEEEECcccC
Confidence 0011112247999999999995533
No 379
>PLN02529 lysine-specific histone demethylase 1
Probab=97.78 E-value=3.2e-05 Score=84.66 Aligned_cols=42 Identities=40% Similarity=0.573 Sum_probs=38.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
....+|+|||||+|||++|..|++. |++|+|+|++..+|+++
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~------g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSF------GFKVVVLEGRNRPGGRV 199 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHc------CCcEEEEecCccCcCce
Confidence 3568999999999999999999999 99999999998887764
No 380
>KOG4254|consensus
Probab=97.77 E-value=0.00012 Score=72.94 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+.+...+++.+++.|.+|++...|.+|..+ +|+++||++.+ |.+++++.||--.+.+-+.
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLAD---------------GTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecC---------------CcEEEeeeeecCCchHHHH
Confidence 567788899999999999999999999987 59999999954 7899999999877766554
No 381
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=97.77 E-value=8.1e-06 Score=81.22 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=41.7
Q ss_pred cCCCCcccccccccccccccccCC---eeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPA---GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~---~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
+|.+.|+. |+.|+++||. +++.+.. .++.+|.+.|+.||.|..+||++||.
T Consensus 166 ~d~~~C~~------Cg~C~~~Cp~~a~~ai~~~~-----~~~~id~~~C~~Cg~Cv~~CP~~Al~ 219 (314)
T TIGR02912 166 YDADRCIG------CGACVKVCKKKAVGALSFEN-----YKVVRDHSKCIGCGECVLKCPTGAWT 219 (314)
T ss_pred eeCccCCc------chHHHHhcChhhcCceeccC-----CeEEeCCCcCcCcchhhhhCCHhhcc
Confidence 36678987 5679999996 5555532 36889999999999999999999986
No 382
>KOG1336|consensus
Probab=97.77 E-value=0.00017 Score=72.69 Aligned_cols=102 Identities=24% Similarity=0.305 Sum_probs=81.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|++||+|..|+-+|-.|... +++|+++++.+.+-.. ++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~------~~~VT~V~~e~~~~~~--------------lf------------------- 253 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSK------AKSVTVVFPEPWLLPR--------------LF------------------- 253 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhc------CceEEEEccCccchhh--------------hh-------------------
Confidence 45699999999999999999998 9999999987754110 10
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.+ .+.+...+..++.||+++.++.+.++..+++|++..|.+.+
T Consensus 254 ---------~~-------------------~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d--------- 296 (478)
T KOG1336|consen 254 ---------GP-------------------SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD--------- 296 (478)
T ss_pred ---------hH-------------------HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc---------
Confidence 00 24445566667789999999999999988889998888854
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
|.++.||+||.+.|+.+.
T Consensus 297 ------g~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 297 ------GKTLEADLVVVGIGIKPN 314 (478)
T ss_pred ------CCEeccCeEEEeeccccc
Confidence 679999999999997655
No 383
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.76 E-value=1.9e-05 Score=82.15 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=46.5
Q ss_pred cCCCCcccccccccccccccccCCe---eEEEEeecCceeEEEEccCCCccCCcccccCCC-CCeeEECCCC
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAG---VYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPT-QNIEWITPEG 552 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~---~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~-~~i~~~~p~g 552 (561)
.|.+.|.. |+.|+.+||.+ ++.+.++ +...+.++.+.|+.||.|..+||. +||++..-..
T Consensus 339 ~~~~~C~~------C~~C~~~Cp~~~~~ai~~~~~--~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~~~ 402 (420)
T PRK08318 339 IDQDKCIG------CGRCYIACEDTSHQAIEWDED--GTRTPEVIEEECVGCNLCAHVCPVEGCITMGEVKF 402 (420)
T ss_pred ECHHHCCC------CCcccccCCCcchhheeeccC--CCceEEechhhCcccchHHhhCCCCCCEEEeccCC
Confidence 47788987 57899999975 5555432 223577899999999999999999 9998865443
No 384
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.75 E-value=3.3e-05 Score=85.03 Aligned_cols=42 Identities=33% Similarity=0.517 Sum_probs=38.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
....+|+|||||+|||++|+.|++. |++|+|+|++..+|+++
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~------g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSM------GFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHC------CCcEEEEeccccCCCcc
Confidence 3468999999999999999999999 99999999999888764
No 385
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=97.75 E-value=6.9e-06 Score=83.68 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=44.4
Q ss_pred EcCCCCcccccccccccccccccCCeeEEE--EeecCce-------eEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEF--IIEKNKI-------QHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~--~~~~~~~-------~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+|.+.|+. |+.|+++||.+++.. .....+. ....+|.+.|+.||.|...||++||++.
T Consensus 3 ~id~~kCi~------Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 3 VRDMSKCIG------CGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred EechhhCCc------ChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 357888988 578999999999762 1111111 1245899999999999999999999864
No 386
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.74 E-value=2.7e-05 Score=74.84 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=36.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
...+|+|||+|++||++|+.|++. ++|++||.....|+|.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-------hdVTLfEA~~rlGGha 46 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-------HDVTLFEADRRLGGHA 46 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-------cceEEEeccccccCcc
Confidence 457899999999999999999997 9999999999999873
No 387
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.74 E-value=3.4e-05 Score=85.49 Aligned_cols=38 Identities=18% Similarity=0.381 Sum_probs=34.7
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~ 63 (561)
....+|+|||||||||++|+.|++. |++|+|+|+.+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~------Gh~Vtv~E~~~i~ 418 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRS------GHNVTAIDGLKIT 418 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhC------CCeEEEEcccccc
Confidence 4568999999999999999999999 9999999987654
No 388
>PRK14694 putative mercuric reductase; Provisional
Probab=97.72 E-value=0.00045 Score=73.17 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=70.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||+|+.|+-+|..|++. |.+|+|+++......
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~------g~~Vtlv~~~~~l~~------------------------------------ 215 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARL------GSRVTVLARSRVLSQ------------------------------------ 215 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEECCCCCCC------------------------------------
Confidence 35899999999999999999999 999999986421100
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. ...+...+.+.+++.|++++.++.+.++..+ ++ .+.+.+.
T Consensus 216 ---------~------------------~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~-~~~v~~~---------- 256 (468)
T PRK14694 216 ---------E------------------DPAVGEAIEAAFRREGIEVLKQTQASEVDYN-GR-EFILETN---------- 256 (468)
T ss_pred ---------C------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CC-EEEEEEC----------
Confidence 0 0023445666677789999999999998754 32 2334432
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+.++.+|.||.|.|....
T Consensus 257 ------~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 257 ------AGTLRAEQLLVATGRTPN 274 (468)
T ss_pred ------CCEEEeCEEEEccCCCCC
Confidence 236999999999997665
No 389
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.71 E-value=0.00037 Score=73.34 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=71.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------------------------------------ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF------GSKVTILEAASLFLPR------------------------------------ 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCC------------------------------------
Confidence 4899999999999999999999 9999999987543110
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
. . ..+.+.+.+.+++.|++++++++|+++..+ ++. +.|.+.
T Consensus 197 --------~-----~-------------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~-v~v~~~----------- 237 (441)
T PRK08010 197 --------E-----D-------------RDIADNIATILRDQGVDIILNAHVERISHH-ENQ-VQVHSE----------- 237 (441)
T ss_pred --------c-----C-------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEEc-----------
Confidence 0 0 023445667777889999999999999764 332 234332
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+.++.+|.||.|.|....
T Consensus 238 -----~g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 238 -----HAQLAVDALLIASGRQPA 255 (441)
T ss_pred -----CCeEEeCEEEEeecCCcC
Confidence 125889999999997654
No 390
>PLN02487 zeta-carotene desaturase
Probab=97.70 E-value=4.1e-05 Score=81.93 Aligned_cols=41 Identities=24% Similarity=0.445 Sum_probs=37.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
...+|+|||||++||++|+.|++. |++|+|+|+.+.+|+..
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~------g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC------CCeeEEEecCCCCCCce
Confidence 346999999999999999999999 99999999999988754
No 391
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.70 E-value=0.00041 Score=73.50 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=72.1
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|+... ..|.+|+|+|+.+.+...
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~---~~G~~Vtli~~~~~il~~----------------------------------- 228 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYK---PRGGKVTLCYRNNMILRG----------------------------------- 228 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhc---cCCCeEEEEecCCccccc-----------------------------------
Confidence 357999999999999997664321 118999999987654110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
++ .++.+.+.+.+++.|+++++++.++++..++++ ...|.+.
T Consensus 229 ---------~d------------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~---------- 270 (486)
T TIGR01423 229 ---------FD------------------STLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFE---------- 270 (486)
T ss_pred ---------cC------------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEc----------
Confidence 00 134455666777789999999999999764333 2334442
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 271 -----~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 271 -----SGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred -----CCCEEEcCEEEEeeCCCcC
Confidence 2457999999999996654
No 392
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.69 E-value=3.8e-05 Score=79.10 Aligned_cols=35 Identities=31% Similarity=0.757 Sum_probs=33.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~ 61 (561)
|++||+|||+|+||+++|+.|++. |.+|+|||+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~------g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEA------GKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC------CCcEEEEECCC
Confidence 679999999999999999999999 99999999874
No 393
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=97.69 E-value=1e-05 Score=77.14 Aligned_cols=45 Identities=24% Similarity=0.562 Sum_probs=40.6
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCC
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDP 541 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp 541 (561)
|++.|.. |+.|+.+||.+|+++.. .++.+|+++|+.||-|..+||
T Consensus 170 ~~E~c~g------c~~cv~~C~~gAI~~~~-----~~l~id~~~Ci~Cg~Ci~~Cp 214 (317)
T COG2221 170 DEELCRG------CGKCVKVCPTGAITWDG-----KKLKIDGSKCIGCGKCIRACP 214 (317)
T ss_pred CHHHhch------hHhHHHhCCCCceeecc-----ceEEEehhhccCccHHhhhCC
Confidence 7788886 46899999999999875 479999999999999999999
No 394
>PRK07846 mycothione reductase; Reviewed
Probab=97.69 E-value=0.00045 Score=72.73 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=69.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+... +
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~~ll~~------~---------------------------- 205 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSAL------GVRVTVVNRSGRLLRH------L---------------------------- 205 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCccccc------c----------------------------
Confidence 46899999999999999999999 9999999987643110 0
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+ .++.+.+.+ ..+.|++++.+++++++..+ ++. +.|.+.
T Consensus 206 ---------------d-------------~~~~~~l~~-l~~~~v~i~~~~~v~~i~~~-~~~-v~v~~~---------- 244 (451)
T PRK07846 206 ---------------D-------------DDISERFTE-LASKRWDVRLGRNVVGVSQD-GSG-VTLRLD---------- 244 (451)
T ss_pred ---------------C-------------HHHHHHHHH-HHhcCeEEEeCCEEEEEEEc-CCE-EEEEEC----------
Confidence 0 012222322 23468999999999999754 222 234442
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 245 -----~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 245 -----DGSTVEADVLLVATGRVPN 263 (451)
T ss_pred -----CCcEeecCEEEEEECCccC
Confidence 3568999999999996544
No 395
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.68 E-value=1.9e-05 Score=91.03 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=45.4
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEee----------------------cCceeEEEEccCCCccCCcccccC
Q psy14496 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIE----------------------KNKIQHLQINAQNCIHCKTCDIKD 540 (561)
Q Consensus 483 ~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~----------------------~~~~~~~~~~~~~C~~Cg~C~~~c 540 (561)
-+.+.+.|+. |+.|+.+||.+++..... ......+.++.+.|++||.|..+|
T Consensus 678 p~~~~~~Ci~------Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~C 751 (1165)
T TIGR02176 678 PVWVPDNCIQ------CNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDIC 751 (1165)
T ss_pred ceeccccCCC------ccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhc
Confidence 3457888987 577999999999875310 000124678999999999999999
Q ss_pred CCC--CeeEE
Q psy14496 541 PTQ--NIEWI 548 (561)
Q Consensus 541 p~~--~i~~~ 548 (561)
|.+ ||.+.
T Consensus 752 P~~~~Al~m~ 761 (1165)
T TIGR02176 752 PAKEKALVMQ 761 (1165)
T ss_pred CCCCcccccc
Confidence 995 88875
No 396
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=97.67 E-value=1.9e-05 Score=76.35 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=44.1
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14496 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 487 ~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
.+.|.. |+.|...||.+++.++++ ...+.+...|..|+.|...||.+||+++.-
T Consensus 168 ~~~C~~------C~~C~~~CP~~vi~~~~~----~~~v~~~~~C~~C~~Ci~~CP~~AI~i~~~ 221 (263)
T PRK00783 168 SEDCDE------CEKCVEACPRGVLELKEG----KLVVTDLLNCSLCKLCERACPGKAIRVSDD 221 (263)
T ss_pred cccCCc------hHHHHHhCCccccEecCC----eEEEeChhhCCCchHHHHhCCCCceEEEEc
Confidence 466866 567999999999998642 345568999999999999999999987653
No 397
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.67 E-value=0.00058 Score=72.27 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=71.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+... +
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~---------------------------- 208 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRL------GVKVTVFERGDRILPL------E---------------------------- 208 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCcCcc------h----------------------------
Confidence 46899999999999999999999 9999999987654210 0
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+ .++.+.+.+.+++. ++++++++++++..+++ ..+.+...+ |
T Consensus 209 ----------d------------------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~~~~------~-- 250 (460)
T PRK06292 209 ----------D------------------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKVEELEKG------G-- 250 (460)
T ss_pred ----------h------------------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEEEcC------C--
Confidence 0 02344555666667 99999999999975422 112222211 1
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
++.++.+|.||.|.|....
T Consensus 251 -----~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 251 -----KTETIEADYVLVATGRRPN 269 (460)
T ss_pred -----ceEEEEeCEEEEccCCccC
Confidence 1347999999999996544
No 398
>PRK12831 putative oxidoreductase; Provisional
Probab=97.67 E-value=0.00052 Score=72.37 Aligned_cols=111 Identities=21% Similarity=0.197 Sum_probs=75.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||..|+-+|..|++. |.+|+|+++.....
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~------Ga~Vtlv~r~~~~~------------------------------------- 317 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRL------GAEVHIVYRRSEEE------------------------------------- 317 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCEEEEEeecCccc-------------------------------------
Confidence 36899999999999999999999 99999998764310
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc---cccC
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG---INKE 178 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~---~~~~ 178 (561)
++ . . . ...+.+.+.||++++++.++++..++++++.+|++.... .+.+
T Consensus 318 ---------m~-----a----------~---~--~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~ 368 (464)
T PRK12831 318 ---------LP-----A----------R---V--EEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDAS 368 (464)
T ss_pred ---------CC-----C----------C---H--HHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCC
Confidence 00 0 0 0 012334567999999999999976656777777664221 1223
Q ss_pred CceecccccC--eEEecCEEEEccCCCc
Q psy14496 179 GIIKKNFQLG--MELYAKYTLFAEGSRG 204 (561)
Q Consensus 179 g~~~~~f~~g--~~i~ad~vV~AdG~~s 204 (561)
|.......+| .++.+|.||.|.|...
T Consensus 369 Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p 396 (464)
T PRK12831 369 GRRRPVEIEGSEFVLEVDTVIMSLGTSP 396 (464)
T ss_pred CCccceecCCceEEEECCEEEECCCCCC
Confidence 4321111122 3689999999999543
No 399
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.67 E-value=3.2e-05 Score=76.73 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEc-CCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 132 DLVRWMGKKAENMGIDIFSGFSASEILYD-SKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 132 ~l~~~L~~~a~~~gv~i~~g~~v~~i~~~-~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
....+|..+....|++|+.++.|++|..+ +++++.+|+..+. ++.. .-..+.++.||+|.|+-.+
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~----~~~~-----~~~~~~ak~VIlaAGai~T 259 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDN----DGGV-----QRRIVAAKEVILAAGAIGT 259 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEET----TTSE-----EEEEEEEEEEEE-SHHHHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeec----CCcc-----eeeeccceeEEeccCCCCC
Confidence 34455555554459999999999999764 4667889988652 2210 0146789999999996544
No 400
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.66 E-value=0.00054 Score=73.04 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=70.1
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-+|+|||||+.|+-+|..|++. |.+|+|+++.... ..
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~~l-~~------------------------------------ 219 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL------GFDVTVAVRSIPL-RG------------------------------------ 219 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCccc-cc------------------------------------
Confidence 4799999999999999999999 9999999863211 00
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
+ + ..+.+.+.+.+++.||+++.++.+.++...+ +. ..|.+
T Consensus 220 --------~-----d-------------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~------------ 259 (499)
T PTZ00052 220 --------F-----D-------------RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLF------------ 259 (499)
T ss_pred --------C-----C-------------HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEE------------
Confidence 0 0 0233456666677899999999998887542 22 23443
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.+|.++.+|.||.|.|....
T Consensus 260 ---~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 260 ---SDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred ---CCCCEEEcCEEEEeeCCCCC
Confidence 23557899999999996544
No 401
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.65 E-value=0.00048 Score=72.95 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=71.4
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+... +
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~il~~------~----------------------------- 213 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL------GSEVDVVEMFDQVIPA------A----------------------------- 213 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCCEEEEecCCCCCCc------C-----------------------------
Confidence 5899999999999999999999 9999999987654110 0
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
. ..+.+.+.+.+++. ++++.++.|+++..++++ +.|.+.+ .+|+
T Consensus 214 --------------d-------------~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~----~~~~-- 257 (471)
T PRK06467 214 --------------D-------------KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG--IYVTMEG----KKAP-- 257 (471)
T ss_pred --------------C-------------HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE--EEEEEEe----CCCc--
Confidence 0 02334455556566 999999999999754332 3344321 0110
Q ss_pred cccccCeEEecCEEEEccCCCchh
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
..++.+|.||.|.|.....
T Consensus 258 -----~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 258 -----AEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred -----ceEEEeCEEEEeecccccC
Confidence 2469999999999976553
No 402
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.65 E-value=0.0024 Score=73.41 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=73.0
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
..-+|+|||||..|+=+|..+.++ |.+ |+++.++....
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rl------Ga~~Vtiv~rr~~~e----------------------------------- 608 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRL------GAPTVRCVYRRSEAE----------------------------------- 608 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeecCccc-----------------------------------
Confidence 346899999999999999999999 875 77776543210
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc---cc
Q psy14496 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG---IN 176 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~---~~ 176 (561)
.+ . . ....+.+++.||++++++.+.++..+++|++.+|++.... .+
T Consensus 609 -----------m~-----a-------~--------~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d 657 (1006)
T PRK12775 609 -----------AP-----A-------R--------IEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPD 657 (1006)
T ss_pred -----------CC-----C-------C--------HHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccC
Confidence 00 0 0 0012345678999999999999976667888887764321 12
Q ss_pred cCCceecccc-cCeEEecCEEEEccCCCc
Q psy14496 177 KEGIIKKNFQ-LGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 177 ~~g~~~~~f~-~g~~i~ad~vV~AdG~~s 204 (561)
.+|+....-. +..++.+|.||.|-|...
T Consensus 658 ~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p 686 (1006)
T PRK12775 658 EKGRRKPMPTGEFKDLECDTVIYALGTKA 686 (1006)
T ss_pred CCCCccccCCCceEEEEcCEEEECCCcCC
Confidence 2332211111 113689999999999543
No 403
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.64 E-value=0.00057 Score=71.98 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=68.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+... ++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~ll~~------~d--------------------------- 209 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSAL------GTRVTIVNRSTKLLRH------LD--------------------------- 209 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccccc------cC---------------------------
Confidence 46899999999999999999999 9999999987543110 00
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.++.+.+.+ ..+.|++++.+++|+++..++++ +.|.+.
T Consensus 210 -----------------------------~~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~--v~v~~~---------- 247 (452)
T TIGR03452 210 -----------------------------EDISDRFTE-IAKKKWDIRLGRNVTAVEQDGDG--VTLTLD---------- 247 (452)
T ss_pred -----------------------------HHHHHHHHH-HHhcCCEEEeCCEEEEEEEcCCe--EEEEEc----------
Confidence 011222322 22458999999999999764332 234432
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 248 -----~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 248 -----DGSTVTADVLLVATGRVPN 266 (452)
T ss_pred -----CCCEEEcCEEEEeeccCcC
Confidence 2457999999999996544
No 404
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.63 E-value=3.4e-05 Score=85.09 Aligned_cols=54 Identities=30% Similarity=0.592 Sum_probs=42.4
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14496 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 487 ~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
...|..|. ..+|+.+||.+++.... ..+.+|.++|++|+.|..+||.++|++..
T Consensus 53 ~~~C~~C~----~~~C~~~CP~~ai~~~~-----~~~~id~~~C~~C~~C~~~CP~~ai~~~~ 106 (654)
T PRK12769 53 AVTCHHCE----DAPCARSCPNGAISHVD-----DSIQVNQQKCIGCKSCVVACPFGTMQIVL 106 (654)
T ss_pred CccCCCCC----ChhHhhhCCccceeccC-----CeEEEecccccCcChhcccCCccCeeecc
Confidence 56787754 45799999999977543 25778999999999999999999998753
No 405
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=97.63 E-value=2.5e-05 Score=75.39 Aligned_cols=55 Identities=22% Similarity=0.275 Sum_probs=45.1
Q ss_pred CCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCCC
Q psy14496 488 KIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPEG 552 (561)
Q Consensus 488 ~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g 552 (561)
+.|.. |+.|+..||.++++++++ ...+.|.+.|..|+.|...||.++|++...++
T Consensus 169 ~~C~~------C~~C~~~CP~~vi~~d~~----~~~v~~~~~C~~C~~C~~~Cp~~AI~~~~~~~ 223 (259)
T cd07030 169 EDCDG------CGKCVEECPRGVLELEEG----KVVVEDLEDCSLCKLCERACDAGAIRVGWDED 223 (259)
T ss_pred hhCCC------hHHHHHhCCccceEccCC----eeEEeChhhCcCchHHHHhCCCCcEEEEecCC
Confidence 56765 567999999999988542 35677999999999999999999998875443
No 406
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00016 Score=69.21 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=34.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~ 65 (561)
+..-|-|||||.||.-+||+++++ |++|.++|-++..+.
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~------Gv~V~L~EMRp~k~T 40 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKR------GVPVILYEMRPVKGT 40 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHc------CCcEEEEEcccccCC
Confidence 556789999999999999999999 999999998876544
No 407
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.62 E-value=0.00047 Score=73.90 Aligned_cols=98 Identities=30% Similarity=0.391 Sum_probs=70.1
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
.+|+|||||+.|+-+|..|++. +.+|+|+|+.+.+..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~------g~~Vtli~~~~~l~~------------------------------------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGI------VRHVTVLEFADELKA------------------------------------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhc------CcEEEEEEeCCcCCh-------------------------------------
Confidence 5899999999999999999999 999999986543210
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.+.+.+.+++ .||++++++.++++..+ ++++.+|.+.+. .+|+
T Consensus 390 -------------------------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~---~~~~- 433 (515)
T TIGR03140 390 -------------------------------DKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDR---NSGE- 433 (515)
T ss_pred -------------------------------hHHHHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEEC---CCCc-
Confidence 0113344444 59999999999998653 455666766431 1111
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+.++.+|.||.|.|....
T Consensus 434 ------~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 434 ------EKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred ------EEEEEcCEEEEEeCCcCC
Confidence 247899999999996543
No 408
>PRK14727 putative mercuric reductase; Provisional
Probab=97.60 E-value=0.00068 Score=72.01 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=71.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+++...... +
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~l~~-------~---------------------------- 226 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARL------GSRVTILARSTLLFR-------E---------------------------- 226 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCCCc-------c----------------------------
Confidence 35799999999999999999999 999999986421100 0
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+ ..+.+.+.+.+++.|++++++++|+++..++++ +.|.+.
T Consensus 227 ----------d------------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~---------- 266 (479)
T PRK14727 227 ----------D------------------PLLGETLTACFEKEGIEVLNNTQASLVEHDDNG--FVLTTG---------- 266 (479)
T ss_pred ----------h------------------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCE--EEEEEc----------
Confidence 0 023455666777889999999999998754322 233332
Q ss_pred ecccccCeEEecCEEEEccCCCchh
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+.++.+|.||.|.|.....
T Consensus 267 ------~g~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 267 ------HGELRAEKLLISTGRHANT 285 (479)
T ss_pred ------CCeEEeCEEEEccCCCCCc
Confidence 1368999999999977653
No 409
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=97.59 E-value=1.8e-05 Score=74.35 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=43.7
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
++|.+.|.. |+.|+..||.+++++..+ +..+|++.|+.|+.|..+||++.|.
T Consensus 170 ~id~~~C~~------C~~C~~aCP~~ai~~~~~-----~~~i~~~~C~~C~~C~~~CP~~~~~ 221 (228)
T TIGR03294 170 VVNQGLCMG------CGTCAAACPTRAIEMEDG-----RPNVNRDRCIKCGACYVQCPRAFWP 221 (228)
T ss_pred EEChhhCcC------hhHHHHhCCHhhEEEeCC-----cEEEChhhccCHHHHHHHcCCCCcc
Confidence 457788987 567999999999887542 3678999999999999999998874
No 410
>PRK09898 hypothetical protein; Provisional
Probab=97.59 E-value=2.8e-05 Score=72.37 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=43.7
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14496 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 483 ~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
.++|.+.|+. ++.|+.+||.+++.++.. ..+.++|..||.|..+||++||.+..
T Consensus 149 v~vd~~~Cig------C~~C~~aCP~~ai~~~~~-------~~~~~kC~~Cg~Cv~~CP~~Ai~~~~ 202 (208)
T PRK09898 149 ITVDHKRCIG------CSACTTACPWMMATVNTE-------SKKSSKCVLCGECANACPTGALKIIE 202 (208)
T ss_pred EEeccccCCC------cCcccccCCCCCCEecCC-------CCcCCcCcChHHHHHhCCcccEEEec
Confidence 3457788987 567999999999887542 12578999999999999999999853
No 411
>PRK13795 hypothetical protein; Provisional
Probab=97.59 E-value=3.1e-05 Score=84.16 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=46.1
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeE
Q psy14496 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 483 ~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
.+++.+.|.. |+.|+..||.+++.+... ...+.+|.+.|++||.|..+||..+|.-
T Consensus 576 ~v~~~~~C~~------Cg~C~~~CP~~ai~~~~~---~~~~~id~~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 576 LLRRAAECVG------CGVCVGACPTGAIRIEEG---KRKISVDEEKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred EEEccccCCC------HhHHHHhCCcccEEeecC---CceEEechhhcCChhHHHhhcCCCeeEe
Confidence 3567888987 567999999999887542 2357899999999999999999998853
No 412
>PRK10262 thioredoxin reductase; Provisional
Probab=97.58 E-value=0.00052 Score=68.89 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=73.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||+|..|+-+|..|++. +.+|+++++.+.....
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~------~~~Vtlv~~~~~~~~~----------------------------------- 184 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNI------ASEVHLIHRRDGFRAE----------------------------------- 184 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhh------CCEEEEEEECCccCCC-----------------------------------
Confidence 35899999999999999999999 9999999987542100
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
..+.+.+.+.+++.||++++++.++++..+ ++.+.+|.+.+.. .++
T Consensus 185 -----------------------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~--~~~-- 230 (321)
T PRK10262 185 -----------------------------KILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQ--NSD-- 230 (321)
T ss_pred -----------------------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcC--CCC--
Confidence 012234555566789999999999999753 3345566653210 001
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
+..++.+|.||.+.|....
T Consensus 231 -----~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 231 -----NIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred -----eEEEEECCEEEEEeCCccC
Confidence 1247999999999996544
No 413
>PLN02546 glutathione reductase
Probab=97.56 E-value=0.00092 Score=71.82 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=72.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~------g~~Vtlv~~~~~il~~----------------------------------- 290 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGL------KSDVHVFIRQKKVLRG----------------------------------- 290 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhc------CCeEEEEEeccccccc-----------------------------------
Confidence 35899999999999999999999 9999999987643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+ + ..+...+.+.+++.||+++.++.++++..++++. +.|.+.
T Consensus 291 ---------~-----d-------------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~-v~v~~~---------- 332 (558)
T PLN02546 291 ---------F-----D-------------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGS-LSLKTN---------- 332 (558)
T ss_pred ---------c-----C-------------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCE-EEEEEC----------
Confidence 0 0 0233456666777899999999999997643442 334432
Q ss_pred ecccccCeEEecCEEEEccCCCchh
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
++....+|.||.|.|.....
T Consensus 333 -----~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 333 -----KGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred -----CeEEEecCEEEEeeccccCC
Confidence 12344589999999977653
No 414
>PRK10194 ferredoxin-type protein; Provisional
Probab=97.54 E-value=2.2e-05 Score=70.11 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=30.4
Q ss_pred ccccccccCCeeEEEEeecCceeEEEEccCCC-----ccCCcccccCCCCCeeEEC
Q psy14496 499 AGPEARYCPAGVYEFIIEKNKIQHLQINAQNC-----IHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C-----~~Cg~C~~~cp~~~i~~~~ 549 (561)
++.|+.+||.++++...... .....++.++| +.|+.|..+||.+||++..
T Consensus 71 C~~C~~~CP~~ai~~~~~~~-~~~~~~~~~~C~~~~~~~C~~C~~~CP~~Ai~~~~ 125 (163)
T PRK10194 71 CYACAQACPESLFSPRHTRA-WDLQFTIGDACLAYQSVECRRCQDSCEPMAIIFRP 125 (163)
T ss_pred chhhHhhCcchheecccccc-cceeeeecccCCCccCCCcCcchhhCCHhHeEeee
Confidence 45677777777766432211 11223355666 5788888888888877753
No 415
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=97.54 E-value=4.4e-05 Score=71.73 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=44.2
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCC----------cccccCCCCCeeEECCC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCK----------TCDIKDPTQNIEWITPE 551 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg----------~C~~~cp~~~i~~~~p~ 551 (561)
.+|.+.|+. ++.|+.+||.+++.+.+. ..+.++|..|+ .|+.+||++||+|...+
T Consensus 121 ~id~~~C~~------C~~C~~aCP~~A~~~~~~-------~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~ 185 (225)
T TIGR03149 121 DVHKDLCVG------CQYCIAACPYRVRFIHPV-------TKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLN 185 (225)
T ss_pred EechhhCCc------chHHHHhCCCCCcEecCC-------CCccccCCCCCcchhhCCCCCcccccCccCCEEEeccc
Confidence 357888987 567999999999776532 12568999999 89999999999986544
No 416
>KOG0685|consensus
Probab=97.52 E-value=0.00011 Score=74.10 Aligned_cols=42 Identities=33% Similarity=0.578 Sum_probs=36.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
...|+|||||.|||+||.+|-++. ..+|+|+|.....|+++.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~g-----f~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENG-----FIDVLILEASDRIGGRIH 62 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhC-----CceEEEEEeccccCceEe
Confidence 468999999999999999999661 568999999999998753
No 417
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.51 E-value=0.00067 Score=72.79 Aligned_cols=97 Identities=26% Similarity=0.327 Sum_probs=70.4
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
.+|+|||||..|+-+|..|+.. +.+|+|+++.+.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~------~~~Vtlv~~~~~l~~------------------------------------- 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI------VKHVTVLEFAPELKA------------------------------------- 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCEEEEEEECccccc-------------------------------------
Confidence 5899999999999999999999 999999987654310
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
...|.+.+.+ .||++++++.++++..+ ++++.+|.+.+. .+|+
T Consensus 389 -------------------------------~~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~---~~g~- 432 (517)
T PRK15317 389 -------------------------------DQVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDR---TTGE- 432 (517)
T ss_pred -------------------------------cHHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEEEC---CCCc-
Confidence 0112333333 59999999999999753 466666766431 1222
Q ss_pred ecccccCeEEecCEEEEccCCCc
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
..++.+|.|+.|.|...
T Consensus 433 ------~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 433 ------EHHLELEGVFVQIGLVP 449 (517)
T ss_pred ------EEEEEcCEEEEeECCcc
Confidence 14699999999999654
No 418
>PRK02106 choline dehydrogenase; Validated
Probab=97.51 E-value=9.9e-05 Score=80.00 Aligned_cols=37 Identities=38% Similarity=0.712 Sum_probs=33.8
Q ss_pred CCcccEEEECchhHHHHHHHHHHh-ccccCCCCCcEEEEcCCCC
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQ-LAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~-~~~~~~~G~~V~ViEk~~~ 62 (561)
+.+||+||||||+||+.+|..|++ . |++|+|||+++.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~------g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDP------DVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCC------CCeEEEecCCCc
Confidence 456999999999999999999999 6 999999999953
No 419
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.50 E-value=0.001 Score=70.65 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=69.8
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-.|+|||||+.|+-+|..|++. |.+|+|+++. .+-. .
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~-~~l~------------------~------------------ 217 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGI------GLDVTVMVRS-ILLR------------------G------------------ 217 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHh------CCcEEEEEec-cccc------------------c------------------
Confidence 4799999999999999999999 9999999863 2100 0
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14496 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
+ + .++.+.+.+.+++.||++++++.+.++... ++. +.|...+ |.
T Consensus 218 --------~-----d-------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~------~~-- 261 (484)
T TIGR01438 218 --------F-----D-------------QDCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAK-VKVTFTD------ST-- 261 (484)
T ss_pred --------c-----C-------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCe-EEEEEec------CC--
Confidence 0 0 023345666677789999999999888754 222 2344322 10
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14496 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.+.++.+|.||.|.|....
T Consensus 262 ----~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 262 ----NGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred ----cceEEEeCEEEEEecCCcC
Confidence 0247999999999996543
No 420
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=97.48 E-value=5.8e-05 Score=71.61 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=40.3
Q ss_pred EcCCCCcccccccccccccccccCC--eeEEEEeecCce-eEEE-------EccCCCccCCcccccCCCCCeeEE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPA--GVYEFIIEKNKI-QHLQ-------INAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~--~~~~~~~~~~~~-~~~~-------~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+|.+.|+. |+.|+++||. +...+.....+. ..+. .+...|++||.|..+||++||.+.
T Consensus 142 ~~d~~kCi~------Cg~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~ 210 (234)
T PRK07569 142 GIDHNRCVL------CTRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRK 210 (234)
T ss_pred EeehhhCcC------ccHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEec
Confidence 358899988 5789999994 333333221111 1222 235689999999999999999863
No 421
>PRK13984 putative oxidoreductase; Provisional
Probab=97.48 E-value=5e-05 Score=83.11 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=46.6
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecC-----c--eeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN-----K--IQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~-----~--~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.|.+.|+. |+.|+.+||.+++.+.+... + .....+|...|..|+.|...||++||+|+
T Consensus 42 ~d~~~Ci~------C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~ 106 (604)
T PRK13984 42 NDWEKCIG------CGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMT 106 (604)
T ss_pred cChhhCcC------ccchhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEec
Confidence 48899988 57799999999987654210 1 12468899999999999999999999884
No 422
>PRK13748 putative mercuric reductase; Provisional
Probab=97.47 E-value=0.00096 Score=72.54 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=71.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+++...... .+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~-------~d--------------------------- 309 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARL------GSKVTILARSTLFFR-------ED--------------------------- 309 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCEEEEEecCccccc-------cC---------------------------
Confidence 35899999999999999999999 999999997431100 00
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.++.+.+.+.+++.||+++.++.++++..+ ++. +.+.+.
T Consensus 310 -----------------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~---------- 348 (561)
T PRK13748 310 -----------------------------PAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTG---------- 348 (561)
T ss_pred -----------------------------HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEec----------
Confidence 023345666667789999999999998754 332 234332
Q ss_pred ecccccCeEEecCEEEEccCCCchh
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
+.++.+|.||.|.|.....
T Consensus 349 ------~~~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 349 ------HGELRADKLLVATGRAPNT 367 (561)
T ss_pred ------CCeEEeCEEEEccCCCcCC
Confidence 1269999999999976553
No 423
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.46 E-value=0.004 Score=63.95 Aligned_cols=43 Identities=30% Similarity=0.315 Sum_probs=36.4
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
.++=|||+|+|+||+|..|-|- .+-||-+|+|+|+.+.+|+.+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrD--a~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRD--AKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhcc--CCCCccceEEEeCCCCCCCcc
Confidence 4677999999999999999776 345789999999999887653
No 424
>PLN03000 amine oxidase
Probab=97.46 E-value=0.00013 Score=80.40 Aligned_cols=41 Identities=39% Similarity=0.579 Sum_probs=38.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
...+|+|||||++||++|..|++. |++|+|+|++..+|+++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~------G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF------GFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC------CCcEEEEEccCcCCCCc
Confidence 468999999999999999999999 99999999999988864
No 425
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.45 E-value=8.3e-05 Score=69.10 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=44.4
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeec----CceeEEEEccCCCc-----cCCcccccCCC--CCeeEECC
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEK----NKIQHLQINAQNCI-----HCKTCDIKDPT--QNIEWITP 550 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~----~~~~~~~~~~~~C~-----~Cg~C~~~cp~--~~i~~~~p 550 (561)
+...|..|. +.+|+.+||.++++..... .....+++|.++|+ +|+.|..+||+ +||++...
T Consensus 89 ~~~~C~~C~----d~~Cv~~CP~~Ai~~~~~~~~~~~~g~av~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~ 160 (213)
T TIGR00397 89 REVPCRMCK----DIPCARACPTGALDPLLTDIRKADMGVAVLVGHETCLNYKGLNCSICVRVCPIRGEAISLKPI 160 (213)
T ss_pred cCCcCCCCC----CchHHhHcCHhhhchhhhccccccCceEEEECCCCcccCCCCCcccchhhCCCCcceEEEecc
Confidence 345677642 2389999999998753111 11234678999999 99999999999 79998754
No 426
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.45 E-value=0.00045 Score=74.76 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~~ 206 (561)
..+.+.|.+.+.+.||+++.++.++++..+++|+++||..-+ ..+|+. ..+.|+.||+|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAIC---IETGET-------VYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEE---cCCCcE-------EEEecCeEEECCCCcccc
Confidence 578899999998899999999999999876678999997632 123322 468999999999988753
No 427
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.45 E-value=5.1e-05 Score=83.31 Aligned_cols=54 Identities=31% Similarity=0.583 Sum_probs=43.7
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+...|..|. .-+|+.+||.+++.+.. ..+.+|.++|++|+.|..+||+++|++.
T Consensus 52 ~~~~C~~C~----~~~C~~~CP~~ai~~~~-----~~v~~d~~~C~gC~~C~~~CP~~ai~~~ 105 (639)
T PRK12809 52 NPVACHHCN----NAPCVTACPVNALTFQS-----DSVQLDEQKCIGCKRCAIACPFGVVEMV 105 (639)
T ss_pred cCCCCcCcC----ChhHHhhCCcCceeccc-----cceecChhhCcchhhHhhhcCCCCEEcc
Confidence 466787754 34799999999988643 2578899999999999999999999874
No 428
>KOG1800|consensus
Probab=97.43 E-value=0.0002 Score=69.90 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=40.5
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGA 71 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~ 71 (561)
+....|.|||+||||+-+|..|.++ .++.+|.|+||.+.|.+-.+.|-
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~----~~~~~Vdi~Ek~PvPFGLvRyGV 65 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKR----HPNAHVDIFEKLPVPFGLVRYGV 65 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhc----CCCCeeEeeecCCcccceeeecc
Confidence 3445999999999999999999886 45899999999999988766663
No 429
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.43 E-value=0.0011 Score=65.55 Aligned_cols=98 Identities=23% Similarity=0.351 Sum_probs=69.2
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
..+|+|||+|+.|+-+|..|++. +.+|+++++.+....
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~------~~~V~~v~~~~~~~~------------------------------------ 178 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRI------AKKVTLVHRRDKFRA------------------------------------ 178 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhh------cCEEEEEEeCcccCc------------------------------------
Confidence 35899999999999999999999 999999998643200
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEecccccccCCc
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGI 180 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~ 180 (561)
...+.+.+.+. |+++++++.++++..+ +++..+.+.+. .+|
T Consensus 179 --------------------------------~~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~---~~g- 220 (300)
T TIGR01292 179 --------------------------------EKILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNT---VTG- 220 (300)
T ss_pred --------------------------------CHHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEec---CCC-
Confidence 01123344455 9999999999999743 35555554221 112
Q ss_pred eecccccCeEEecCEEEEccCCCch
Q psy14496 181 IKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
.+.++.+|.||.|.|....
T Consensus 221 ------~~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 221 ------EEEELKVDGVFIAIGHEPN 239 (300)
T ss_pred ------ceEEEEccEEEEeeCCCCC
Confidence 1357999999999995543
No 430
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.40 E-value=0.0097 Score=63.21 Aligned_cols=39 Identities=15% Similarity=-0.020 Sum_probs=31.2
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcC
Q psy14496 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSN 373 (561)
Q Consensus 330 ~~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~ 373 (561)
+.++|+++||++.. ...+..|+.+|..+|..|.+.|.+.
T Consensus 443 s~~gVfAaGD~~~g-----~~~~~~Av~~G~~AA~~i~~~L~g~ 481 (485)
T TIGR01317 443 SIPGVFAAGDCRRG-----QSLIVWAINEGRKAAAAVDRYLMGS 481 (485)
T ss_pred CCCCEEEeeccCCC-----cHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34799999999742 2246789999999999999998753
No 431
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=97.39 E-value=2.2e-05 Score=67.95 Aligned_cols=67 Identities=22% Similarity=0.274 Sum_probs=52.8
Q ss_pred ccCCCCCCceEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14496 473 NHDEDQPIHLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 473 ~~~~~~~~h~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
.|.+.+++-+-.+|++.|+.| ..|+.+||.+++.--.+ .-..+..+-|.+|+.|...||+++|++..
T Consensus 100 ~~~~~~~~~va~i~e~~ciGC------tkCiqaCpvdAivg~~~----~mhtv~~dlCTGC~lCva~CPtdci~m~~ 166 (198)
T COG2878 100 EHGEEQARMVALIDEANCIGC------TKCIQACPVDAIVGATK----AMHTVIADLCTGCDLCVAPCPTDCIEMQP 166 (198)
T ss_pred hhhccccceeeEecchhcccc------HHHHHhCChhhhhccch----hHHHHHHHHhcCCCcccCCCCCCceeeee
Confidence 556667777878899999994 56999999999654321 23456889999999999999999999854
No 432
>PLN02976 amine oxidase
Probab=97.36 E-value=0.00023 Score=81.35 Aligned_cols=41 Identities=37% Similarity=0.652 Sum_probs=37.8
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14496 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
...+|+||||||+|+++|+.|++. |++|+|||+.+.+|+.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~------G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ------GFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC------CCcEEEEeeccCCCCce
Confidence 458999999999999999999999 99999999998888764
No 433
>PRK07118 ferredoxin; Validated
Probab=97.35 E-value=6.9e-05 Score=72.64 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=40.2
Q ss_pred ccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 499 AGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++.|+.+||.+++.+.+ ....+|+++|+.|+.|...||.++|++.
T Consensus 144 Cg~C~~aCp~~AI~~~~-----g~~~id~~~C~~Cg~Cv~aCP~~ai~~~ 188 (280)
T PRK07118 144 LGSCVAACPFDAIHIEN-----GLPVVDEDKCTGCGACVKACPRNVIELI 188 (280)
T ss_pred hhHHHHhCCccCeEccC-----CeEEEChhhCcChhHHHHhcCccceeee
Confidence 57899999999988753 2588999999999999999999999986
No 434
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=97.34 E-value=6e-05 Score=75.83 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=42.2
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCce-------eEEEEccCCCccCCcccccCCCCCe
Q psy14496 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKI-------QHLQINAQNCIHCKTCDIKDPTQNI 545 (561)
Q Consensus 483 ~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~-------~~~~~~~~~C~~Cg~C~~~cp~~~i 545 (561)
.+++.+.|.. |+.|+.+||.+++.+.++.... ....+|...|+.||.|..+||..++
T Consensus 7 ~vi~~~~C~g------Cg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 7 EVIEYDVCTA------CGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred cEECcccCcC------hHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcc
Confidence 3678889987 5789999999999886431100 0113578899999999999998554
No 435
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=97.31 E-value=5.3e-05 Score=72.92 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=44.1
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccC---------CcccccCCCCCeeE
Q psy14496 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHC---------KTCDIKDPTQNIEW 547 (561)
Q Consensus 482 ~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C---------g~C~~~cp~~~i~~ 547 (561)
+.++|.+.|+. |+.|+.+||.+++.+... ..+.++|..| ..|+.+||++|+.+
T Consensus 156 iV~ID~ekCiG------Cg~Cv~ACPygAi~~n~~-------~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~f 217 (321)
T TIGR03478 156 IVLVDQERCKG------YRYCVEACPYKKVYFNPQ-------SQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFV 217 (321)
T ss_pred eEEECHHHCcc------hHHHHHhCCCCCcEecCC-------CCchhhCCCchhhhccCCCCHHHhhcCcccEEE
Confidence 44578899988 467999999999887642 1467899999 89999999999987
No 436
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.30 E-value=0.0015 Score=66.52 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=29.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCC
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGS 61 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~ 61 (561)
-.|+|||+|+.|+-+|..|++. |.+ |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~------g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL------GAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeecc
Confidence 4799999999999999999988 987 99998754
No 437
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.29 E-value=0.002 Score=68.30 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=71.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCC-cEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~-~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
.-.|+|||||..|+-+|..+.+. |. +|++++....+....
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~------ga~~Vt~~~~~~~~~~~~--------------------------------- 321 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQ------GAKSVTQRDIMPMPPSRR--------------------------------- 321 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCeEEEccccCCCcccc---------------------------------
Confidence 35799999999999999988888 75 788776554331100
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCc
Q psy14496 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGI 180 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~ 180 (561)
......+. + ....+.+.+.+.||++++++.++++.. +++++.+|++..... .+|.
T Consensus 322 ----------~~~~~~~~-------~------~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~-~~g~ 376 (471)
T PRK12810 322 ----------NKNNPWPY-------W------PMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTEL-GEGD 376 (471)
T ss_pred ----------ccccCCcc-------c------chHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEe-cCCC
Confidence 00000000 0 001134455678999999999999964 367787777643221 1221
Q ss_pred eecccccCeEEecCEEEEccCCCc
Q psy14496 181 IKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
....-....++.+|.||.|.|...
T Consensus 377 ~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 377 FEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred ccccCCceEEEECCEEEECcCcCC
Confidence 100001125799999999999543
No 438
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.28 E-value=0.00018 Score=68.72 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=42.9
Q ss_pred CCcccccccccccccccccCCeeEEEEeecC----ceeEEEEccCCCc-----cCCcccccCCC--CCeeEEC
Q psy14496 488 KIPIHINFSIYAGPEARYCPAGVYEFIIEKN----KIQHLQINAQNCI-----HCKTCDIKDPT--QNIEWIT 549 (561)
Q Consensus 488 ~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~----~~~~~~~~~~~C~-----~Cg~C~~~cp~--~~i~~~~ 549 (561)
..|..|. .-+|+.+||.+++++..... -...+.+|+++|+ +|+.|..+||. +||+++.
T Consensus 97 ~~C~~C~----~~~Cv~aCPtgAL~~~~~~~~~~~~g~av~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~ 165 (254)
T PRK09476 97 IPCEMCE----DIPCVKACPSGALDRELVDIDDARMGLAVLVDQENCLNFQGLRCDVCYRVCPLIDKAITLEL 165 (254)
T ss_pred CcCcCCC----CCchhhccCccceEeecccccccccCceeecchhhccccCCCchHHHhhhCCCccCeEEEEc
Confidence 4566632 23799999999998753211 1134559999999 89999999996 8999875
No 439
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=97.26 E-value=7e-05 Score=59.90 Aligned_cols=54 Identities=22% Similarity=0.427 Sum_probs=35.6
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccC---------CcccccCCCCCeeEE
Q psy14496 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHC---------KTCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C---------g~C~~~cp~~~i~~~ 548 (561)
+.++|.++|+. ++.|+.+||.+++.++++.+ -..+|--| ..|+.+||++||++.
T Consensus 34 ~V~id~~~Cig------C~~C~~aCP~~ai~~~~~~~-------~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g 96 (98)
T PF13247_consen 34 IVVIDEDKCIG------CGYCVEACPYGAIRFDPDTG-------KARKCDLCIDRIEEGEEPACVEACPTGALTFG 96 (98)
T ss_dssp -EEE-TTTCCT------HHHHHHH-TTS-EEEETTTT-------CEEE--TTHHHHTTT-S-HHHHH-TTS-EEEE
T ss_pred eEEechhhccC------chhhhhhhccCcceeecccc-------cCCcCceehhhhhcCCCChhHHhccccceEEe
Confidence 44678999998 56799999999999876422 23467777 789999999999873
No 440
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.24 E-value=0.0028 Score=71.25 Aligned_cols=109 Identities=21% Similarity=0.269 Sum_probs=73.2
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
-.|+|||||..|+-+|..|.+. |.+ |+|+++++...
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~------Ga~~Vtlv~r~~~~~------------------------------------- 607 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRL------GAERVTIVYRRSEEE------------------------------------- 607 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHc------CCCeEEEeeecCccc-------------------------------------
Confidence 5899999999999999999999 987 99998764310
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc---cccC
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG---INKE 178 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~---~~~~ 178 (561)
++ . . . ...+.+.+.||++++++.+.++..++++++.+|++.... .+.+
T Consensus 608 ---------~~-----~----------~---~--~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~ 658 (752)
T PRK12778 608 ---------MP-----A----------R---L--EEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDAS 658 (752)
T ss_pred ---------CC-----C----------C---H--HHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCC
Confidence 00 0 0 0 011345668999999999999976666777777764211 1123
Q ss_pred Cceeccc--ccCeEEecCEEEEccCCC
Q psy14496 179 GIIKKNF--QLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 179 g~~~~~f--~~g~~i~ad~vV~AdG~~ 203 (561)
|+..... .+..++.+|.||.|.|..
T Consensus 659 G~~~~~~~~g~~~~i~~D~Vi~A~G~~ 685 (752)
T PRK12778 659 GRRRPVAIPGSTFTVDVDLVIVSVGVS 685 (752)
T ss_pred CCCCceecCCCeEEEECCEEEECcCCC
Confidence 3211111 112468999999999954
No 441
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=97.22 E-value=0.00016 Score=75.98 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=40.5
Q ss_pred EEcCCCCcccccccccccccccccC----CeeEEEEeecCce-----eEEEEccCCCccCCcccccCCCCCe
Q psy14496 483 ILKNKKIPIHINFSIYAGPEARYCP----AGVYEFIIEKNKI-----QHLQINAQNCIHCKTCDIKDPTQNI 545 (561)
Q Consensus 483 ~~~~~~~c~~~~~~~~~~~c~~~CP----~~~~~~~~~~~~~-----~~~~~~~~~C~~Cg~C~~~cp~~~i 545 (561)
.+-|++.|+. |+.|+++|- +.++.++-..... ...-|+.+-|+.||.|+.+||++|+
T Consensus 144 y~ydp~qCIl------CgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nAL 209 (978)
T COG3383 144 YIYDPNQCIL------CGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNAL 209 (978)
T ss_pred EEecchheee------hhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhh
Confidence 4669999998 678999996 2344443321100 1234577889999999999999997
No 442
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=97.22 E-value=4.4e-05 Score=56.95 Aligned_cols=44 Identities=25% Similarity=0.498 Sum_probs=35.1
Q ss_pred ccccccccCCeeEEEEee------------cCceeEEEEccCCCc------cCCcccccCCC
Q psy14496 499 AGPEARYCPAGVYEFIIE------------KNKIQHLQINAQNCI------HCKTCDIKDPT 542 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~------------~~~~~~~~~~~~~C~------~Cg~C~~~cp~ 542 (561)
++.|+++||++||+...+ ..+.+.+..|..+|. .||.|..+||.
T Consensus 5 C~~C~~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~C~~C~~vCP~ 66 (67)
T PF13484_consen 5 CGKCAEACPTGAISGEDEPTWEPKGCWSYNNPGVKKWRIDWEKCVSYWDCYGCGICQKVCPF 66 (67)
T ss_pred hhHHHHhCcHhhccCCCcCeeecCcchhccCccccCccchHHhhhcCCCccccchhhccCCC
Confidence 578999999999987621 123356778888898 99999999996
No 443
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=97.19 E-value=0.00021 Score=37.05 Aligned_cols=17 Identities=41% Similarity=0.794 Sum_probs=14.0
Q ss_pred cCCCccCCcccccCCCC
Q psy14496 527 AQNCIHCKTCDIKDPTQ 543 (561)
Q Consensus 527 ~~~C~~Cg~C~~~cp~~ 543 (561)
+++|++|+.|..+||.+
T Consensus 1 ~~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 1 QERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp -CCCTTSSSSTTTSTT-
T ss_pred CCcCCCCchHHhhccCC
Confidence 36899999999999974
No 444
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=97.16 E-value=0.00011 Score=69.75 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=43.7
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCC---------cccccCCCCCeeEE
Q psy14496 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCK---------TCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~cp~~~i~~~ 548 (561)
+.++|.+.|+. ++.|+.+||.+++++... ..+.++|..|+ .|..+||++||.+.
T Consensus 124 ~v~id~~~Cig------C~~Cv~aCP~~Ai~~~~~-------~~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g 186 (244)
T PRK14993 124 IVVVDNKRCVG------CAYCVQACPYDARFINHE-------TQTADKCTFCVHRLEAGLLPACVESCVGGARIIG 186 (244)
T ss_pred CEEEcHHHCCC------HHHHHHhcCCCCCEEeCC-------CCCcccCcCCcchhhCCCCcccchhcccCCEEEc
Confidence 34568889988 467999999999988652 12568999998 89999999999763
No 445
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.12 E-value=0.0055 Score=64.78 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=73.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCC-cEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~-~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
...|+|||+|..|+-+|..+.+. |. +|+|+++++...-
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~------Ga~~Vtvv~r~~~~~~----------------------------------- 320 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRL------GAASVTCAYRRDEANM----------------------------------- 320 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCeEEEEEecCcccC-----------------------------------
Confidence 46899999999999999999998 85 7999998654210
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccc---cccc
Q psy14496 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNF---GINK 177 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~---~~~~ 177 (561)
+ . . ....+.+.+.||++++++.++++..++++++.+|++... ..+.
T Consensus 321 -----------~-----~----------~-----~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~ 369 (467)
T TIGR01318 321 -----------P-----G----------S-----RREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDA 369 (467)
T ss_pred -----------C-----C----------C-----HHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCC
Confidence 0 0 0 012234567899999999999997655667776665321 1122
Q ss_pred CCceecc--cccCeEEecCEEEEccCCC
Q psy14496 178 EGIIKKN--FQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 178 ~g~~~~~--f~~g~~i~ad~vV~AdG~~ 203 (561)
+|..... -.+..++.+|.||.|.|..
T Consensus 370 ~g~~~~~~~~g~~~~i~~D~Vi~a~G~~ 397 (467)
T TIGR01318 370 DGRRRPVPVAGSEFVLPADVVIMAFGFQ 397 (467)
T ss_pred CCCccceecCCceEEEECCEEEECCcCC
Confidence 3321111 1123478999999999954
No 446
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=97.08 E-value=0.00028 Score=64.18 Aligned_cols=60 Identities=18% Similarity=0.327 Sum_probs=44.8
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecC----c----eeEEEEccCCCccCC------cccccCCCCCeeEEC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN----K----IQHLQINAQNCIHCK------TCDIKDPTQNIEWIT 549 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~----~----~~~~~~~~~~C~~Cg------~C~~~cp~~~i~~~~ 549 (561)
.++.+.|.. ++.|+.+||.+++++..... + .....++.++|..|+ +|..+||++||++..
T Consensus 83 ~i~~~~C~~------C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~ 156 (181)
T PRK10330 83 HVMQERCIG------CKTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVD 156 (181)
T ss_pred EeChhhCCC------cchhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeC
Confidence 347788987 56799999999998763210 0 011245678999999 999999999999854
No 447
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.07 E-value=0.0053 Score=64.85 Aligned_cols=110 Identities=21% Similarity=0.255 Sum_probs=70.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCC-cEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~-~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
.-+|+|||||..|+-+|..|++. |. +|+|+++.....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~------G~~~Vtlv~~~~~~~------------------------------------ 310 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRL------GAESVTIVYRRGREE------------------------------------ 310 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCCeEEEeeecCccc------------------------------------
Confidence 46899999999999999999999 88 899998764310
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccc---cccc
Q psy14496 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNF---GINK 177 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~---~~~~ 177 (561)
++ . . ..+.+.+.+.||++++++.+.++..+ ++.+.+|.+... ..+.
T Consensus 311 ----------~~-----~----------~-----~~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~ 359 (457)
T PRK11749 311 ----------MP-----A----------S-----EEEVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDA 359 (457)
T ss_pred ----------CC-----C----------C-----HHHHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCC
Confidence 00 0 0 01234556789999999999998754 333344544211 0122
Q ss_pred CCceeccc-ccCeEEecCEEEEccCCCc
Q psy14496 178 EGIIKKNF-QLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 178 ~g~~~~~f-~~g~~i~ad~vV~AdG~~s 204 (561)
+|...... .++.++.+|.||.|.|...
T Consensus 360 ~g~~~~~~~g~~~~i~~D~vi~a~G~~p 387 (457)
T PRK11749 360 SGRRRVPIEGSEFTLPADLVIKAIGQTP 387 (457)
T ss_pred CCCcccCCCCceEEEECCEEEECccCCC
Confidence 23211000 1235799999999999543
No 448
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=97.07 E-value=0.00018 Score=64.08 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=42.9
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCC---------cccccCCCCCeeEEC
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCK---------TCDIKDPTQNIEWIT 549 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~cp~~~i~~~~ 549 (561)
.++.+.|.. ++.|+.+||.+++.+.... ...++|..|+ .|..+||++||+|..
T Consensus 91 ~i~~~~C~~------C~~C~~aCP~~ai~~~~~~-------~~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~ 152 (161)
T TIGR02951 91 LVDQDKCIG------CRYCVWACPYGAPQYDPQQ-------GVMGKCDGCYDRVEKGLRPACVDACPMRALDFGP 152 (161)
T ss_pred EECHHhCCC------chHHHhhCCCCCcEEcCCC-------CccccCCCCHHHHHCCCCCcchhhccccceEEec
Confidence 457788877 5679999999998876431 1357999998 999999999999964
No 449
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.06 E-value=0.00018 Score=71.04 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=42.2
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCc-------------ccccCCCCCeeE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKT-------------CDIKDPTQNIEW 547 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~-------------C~~~cp~~~i~~ 547 (561)
.+|.+.|+. |+.|+.+||.+++.+..+. ......+|..|+. |+.+||++||.+
T Consensus 139 ~id~dkCig------Cg~Cv~aCP~gai~~~~~~-----~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~f 204 (328)
T PRK10882 139 HYDKDVCTG------CRYCMVACPFNVPKYDYNN-----PFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIF 204 (328)
T ss_pred cCCHHHcCc------ccHHHHhCCccceeccccc-----cccceeecccccccchhhhhcCCCChhhhhccccceEe
Confidence 457788987 5679999999998875431 1234578999999 999999999987
No 450
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=97.05 E-value=0.00023 Score=72.29 Aligned_cols=43 Identities=21% Similarity=0.507 Sum_probs=36.9
Q ss_pred ccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14496 499 AGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
.+.|+..||.+|++++. + +++.+|.++|++|+-|..+||. |++
T Consensus 247 ~~~~v~~Cp~~ai~~~~---~-~~~~id~~~C~~Cm~Ci~~~p~-a~~ 289 (402)
T TIGR02064 247 ENEVVNRCPTKAISWDG---S-KELSIDNRECVRCMHCINKMPK-ALH 289 (402)
T ss_pred chhHhhcCCccccccCC---C-ceEEEcchhcCcCccccccCcc-ccc
Confidence 35699999999999864 1 3799999999999999999997 654
No 451
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.04 E-value=0.00022 Score=78.85 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=39.3
Q ss_pred EEcCCCCcccccccccccccccccCC----eeEEEEeecCcee----------------------EEEE-----ccCCCc
Q psy14496 483 ILKNKKIPIHINFSIYAGPEARYCPA----GVYEFIIEKNKIQ----------------------HLQI-----NAQNCI 531 (561)
Q Consensus 483 ~~~~~~~c~~~~~~~~~~~c~~~CP~----~~~~~~~~~~~~~----------------------~~~~-----~~~~C~ 531 (561)
...|.+.|+. |+.|+++||. +++.+.. .|.. ...+ +...|+
T Consensus 136 I~~D~~rCI~------C~RCVr~C~ev~g~~al~~~~--RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~ 207 (819)
T PRK08493 136 INYDPSLCIV------CERCVTVCKDKIGESALKTVP--RGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCS 207 (819)
T ss_pred EEechhhccc------ccHHHhhCcccccchhhhhcc--CCcccccccccccccccchhhhhhcccceecccCCCccccc
Confidence 3469999999 5789999995 3333221 0100 0011 357999
Q ss_pred cCCcccccCCCCCeeEE
Q psy14496 532 HCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 532 ~Cg~C~~~cp~~~i~~~ 548 (561)
.||.|..+||++||.-+
T Consensus 208 ~CG~Cv~VCPvGAL~~k 224 (819)
T PRK08493 208 FCGECIAVCPVGALSSS 224 (819)
T ss_pred ccCcHHHhCCCCccccC
Confidence 99999999999999643
No 452
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.02 E-value=0.00044 Score=49.74 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=15.2
Q ss_pred EEccCCCccCCcccccCCCCCeeE
Q psy14496 524 QINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 524 ~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
+||+++|++||.|..+||.++|+.
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~ 25 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDA 25 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-
T ss_pred EECcccccChhhHHhHcCccceee
Confidence 689999999999999999876654
No 453
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.00 E-value=0.00067 Score=72.80 Aligned_cols=37 Identities=41% Similarity=0.675 Sum_probs=34.1
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~ 61 (561)
..+++|+||||+|.||.++|..|+.. |++|+|+|++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~------g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDA------GLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCC------CCeEEEEeCCC
Confidence 34689999999999999999999977 99999999985
No 454
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=96.95 E-value=0.00042 Score=62.74 Aligned_cols=54 Identities=26% Similarity=0.478 Sum_probs=44.4
Q ss_pred ceEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccC------C---cccccCCCCCeeE
Q psy14496 481 HLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHC------K---TCDIKDPTQNIEW 547 (561)
Q Consensus 481 h~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C------g---~C~~~cp~~~i~~ 547 (561)
-|.++|.++|+. |+-|+.+||-++..++++. + -.++|..| | .|+..||++|+.|
T Consensus 93 GiV~vd~d~CIG------C~yCi~ACPyga~~~~~~~---~----~~~KCt~C~~ri~~g~~PaCV~~CP~~A~~f 155 (203)
T COG0437 93 GIVLVDKDLCIG------CGYCIAACPYGAPQFNPDK---G----VVDKCTFCVDRVAVGKLPACVEACPTGALIF 155 (203)
T ss_pred CEEEecCCcccC------chHHHhhCCCCCceeCccc---C----cccccCcchhhHhcCCCCcccccCCcccccc
Confidence 455678999999 4669999999998887631 1 16899999 8 9999999999875
No 455
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.95 E-value=0.025 Score=58.52 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14496 132 DLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 132 ~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
++.+.|.+.+.+.|++++.+++|+++..+ ++.+..+.+. +|+ ...+++|.||.|+|..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~------~g~-------~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTR------NHG-------DIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEee------CCc-------eEEEECCEEEEeCCCc
Confidence 36667888888899999999999999865 4455544432 111 1368999999999965
No 456
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.92 E-value=0.0046 Score=62.66 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=82.7
Q ss_pred CCcEEEEcCCCCCCCcee-ecc----eeChhhHHhhccccc-----cCCccccccchhhhhhhcCCCCc-cc--CCCCCC
Q psy14496 51 EIKICVLEKGSELGAHIL-SGA----IIDPRSIFELFPKEK-----LNKLFNTPVIEERFLFLSSKKSY-KI--PSWILP 117 (561)
Q Consensus 51 G~~V~ViEk~~~~g~~~~-~G~----~~~~~~l~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~p 117 (561)
|.+|+|+||.+.+|.++. +|. +.+.....+++.... ....+......+-+.|+.+.+-. .. ....+|
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~grvfP 80 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGRVFP 80 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCEECC
Confidence 568999999999988764 332 112111111211111 11122233344555666553221 11 112222
Q ss_pred ceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEE
Q psy14496 118 ICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTL 197 (561)
Q Consensus 118 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV 197 (561)
. .-.-..+...|...+++.||+|+++++|+++ . ++. ..|.+.. ++.+++||.||
T Consensus 81 ~--------S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~--~~~-~~v~~~~--------------~~~~~~a~~vI 134 (376)
T TIGR03862 81 V--------EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q--GGT-LRFETPD--------------GQSTIEADAVV 134 (376)
T ss_pred C--------CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e--CCc-EEEEECC--------------CceEEecCEEE
Confidence 1 2345688999999999999999999999999 2 222 4565521 12368999999
Q ss_pred EccCCCch-------hhHHHHHHcCCCC
Q psy14496 198 FAEGSRGH-------LSKQIIKKFNLDN 218 (561)
Q Consensus 198 ~AdG~~s~-------~~~~l~~~~g~~~ 218 (561)
+|+|..|. ..-.+++++|...
T Consensus 135 lAtGG~s~p~~Gs~g~gy~la~~lGh~i 162 (376)
T TIGR03862 135 LALGGASWSQLGSDGAWQQVLDQRGVSV 162 (376)
T ss_pred EcCCCccccccCCCcHHHHHHHHCCCcc
Confidence 99998763 1234555677665
No 457
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.92 E-value=0.00068 Score=73.04 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14496 133 LVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 133 l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~ 205 (561)
...+|.....+.|++|+.++.|++|..+ ++++++|++.+. |.. ...+.++.||+|.|+-.+
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~-----~~~------~~~~~ak~VIlaAGai~S 256 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKG-----GRK------EHTEANKEVILSAGAINS 256 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeC-----CcE------EEEEEeeeEEEccCCCCC
Confidence 3344443333568999999999999986 678889987431 110 124589999999998443
No 458
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=96.92 E-value=0.00029 Score=68.07 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=41.8
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCC---------cccccCCCCCeeEE
Q psy14496 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCK---------TCDIKDPTQNIEWI 548 (561)
Q Consensus 483 ~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~cp~~~i~~~ 548 (561)
..+|.+.|+. |+.|+.+||.+++++++.. ....+|..|. .|+.+||++||+|.
T Consensus 119 V~id~dkCig------C~~Cv~aCP~~a~~~~~~~-------~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg 180 (283)
T TIGR01582 119 VDFDHSKCIG------CGYCIVGCPFNIPRYDKVD-------NRPYKCTLCIDRVSVGQEPACVKTCPTNAISFG 180 (283)
T ss_pred EEEeHHHCCc------chHHHhhCCCCCcEEcCCC-------CChhhhcccccccccCCCChHhCcccHhhEEEC
Confidence 3468889988 4679999999999886531 1245788884 99999999999984
No 459
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=96.90 E-value=0.00042 Score=72.19 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=40.9
Q ss_pred EcCCCCcccccccccccccc--cccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14496 484 LKNKKIPIHINFSIYAGPEA--RYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~--~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
.+|+++|.. |+.|+ .-||+ +++.++ .++..+|..-|++||.|..+||..+|.
T Consensus 573 ~Vd~~~CtG------C~~C~~~~~Cps--i~~~~~---~~k~~id~~~C~GCg~C~~iCP~~a~~ 626 (640)
T COG4231 573 FVDEEKCTG------CGDCIVLSGCPS--IEPDPT---FKKARIDPSSCNGCGSCVEVCPSFAIK 626 (640)
T ss_pred eechhhcCC------cHHHHhhcCCce--EeecCC---CCceeecccccccchhhhhcCchhhee
Confidence 358899988 45687 45886 444442 258999999999999999999999985
No 460
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.87 E-value=0.00025 Score=35.33 Aligned_cols=15 Identities=33% Similarity=0.673 Sum_probs=13.1
Q ss_pred CccCCcccccCCCCC
Q psy14496 530 CIHCKTCDIKDPTQN 544 (561)
Q Consensus 530 C~~Cg~C~~~cp~~~ 544 (561)
|.+|+.|..+||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 788999999999876
No 461
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.79 E-value=0.00044 Score=69.60 Aligned_cols=58 Identities=19% Similarity=0.407 Sum_probs=41.9
Q ss_pred EcCCCCcccccccccccccccccCCeeEE-EEee------------cCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVYE-FIIE------------KNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~~-~~~~------------~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
-.| +.|.. |+.|..+||..+-. ++.. ..-.....+|...|++||.|..+||..+|+|+
T Consensus 221 yVd-d~Ctg------Cg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~ 291 (622)
T COG1148 221 YVD-DKCTG------CGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLN 291 (622)
T ss_pred ccc-ccccc------cccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccC
Confidence 345 78888 57899999986421 1110 00113567899999999999999999999985
No 462
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.73 E-value=0.017 Score=58.10 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=70.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce---eecceeChhhHHhhccccccCCccccccc
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI---LSGAIIDPRSIFELFPKEKLNKLFNTPVI 96 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~---~~G~~~~~~~l~~l~~~~~~~~~~~~~~~ 96 (561)
.....|+|||||-++.-.+..|.+. .|..+|+++=|++.....- ..-.+++|..++.+... ..
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~----~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l----------~~ 253 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRR----GPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSL----------PD 253 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-----TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-----------H
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhC----CCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcC----------CH
Confidence 4568999999999999999999998 2235899998876542211 11134455444332110 00
Q ss_pred hhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHH---HHHHHHHH-HH-HCCCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14496 97 EERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSD---LVRWMGKK-AE-NMGIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~---l~~~L~~~-a~-~~gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
......+...... ..-.|+... |-+.|++. +. +..+.++.++.|+++..++++. +.+.+.
T Consensus 254 ~~R~~~l~~~~~~--------------ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~-~~l~~~ 318 (341)
T PF13434_consen 254 EERRELLREQRHT--------------NYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG-VRLTLR 318 (341)
T ss_dssp HHHHHHHHHTGGG--------------TSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS-EEEEEE
T ss_pred HHHHHHHHHhHhh--------------cCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE-EEEEEE
Confidence 1111111110000 011122221 22223222 21 2348999999999998875443 345553
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCC
Q psy14496 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
+. .+|+ ..++++|.||.|||-
T Consensus 319 ~~---~~~~-------~~~~~~D~VilATGy 339 (341)
T PF13434_consen 319 HR---QTGE-------EETLEVDAVILATGY 339 (341)
T ss_dssp ET---TT---------EEEEEESEEEE---E
T ss_pred EC---CCCC-------eEEEecCEEEEcCCc
Confidence 31 1121 257899999999994
No 463
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.70 E-value=0.021 Score=66.07 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=73.4
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCC-cEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGaGpAGLa~A~~La~~~~~~~~G~-~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
-.|+|||+|+.|+-+|..|++. |. .|+|+|..+...
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~------G~~vV~vv~~~~~~~------------------------------------- 354 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA------GIAVVAIIDARADVS------------------------------------- 354 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCceEEEEccCcchh-------------------------------------
Confidence 5899999999999999999999 95 588998654320
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
..+.+.+++.||+++.++.++++.. ++.+.+|.+... +|
T Consensus 355 ---------------------------------~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~----~g-- 393 (985)
T TIGR01372 355 ---------------------------------PEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARN----GG-- 393 (985)
T ss_pred ---------------------------------HHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEec----CC--
Confidence 0133455678999999999999863 345556655310 11
Q ss_pred ecccccCeEEecCEEEEccCCCchhhHHHHHHcCC
Q psy14496 182 KKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNL 216 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~ 216 (561)
++.++.+|.|+.+.|..... .+...++.
T Consensus 394 -----~~~~i~~D~V~va~G~~Pnt--~L~~~lg~ 421 (985)
T TIGR01372 394 -----AGQRLEADALAVSGGWTPVV--HLFSQRGG 421 (985)
T ss_pred -----ceEEEECCEEEEcCCcCchh--HHHHhcCC
Confidence 24579999999999987763 34444553
No 464
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=96.66 E-value=0.00059 Score=74.17 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=37.3
Q ss_pred cCCCCccccccccccccccc--ccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCe
Q psy14496 485 KNKKIPIHINFSIYAGPEAR--YCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNI 545 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~--~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i 545 (561)
+|++.|+. |+.|+. .||+.. ..+ ....+|. .|+.||.|..+||.+||
T Consensus 547 id~~~C~~------C~~C~~~~~CP~~~--~~~-----~~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 547 VDQDKCIG------CKKCIKELGCPAIE--PED-----KEAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred EcCCcCCC------ccccccccCCCCcc--ccC-----CcceeCC-CCcCHHHHHhhCccccC
Confidence 47788988 567999 999644 221 2577888 79999999999999986
No 465
>KOG0405|consensus
Probab=96.66 E-value=0.023 Score=55.27 Aligned_cols=43 Identities=26% Similarity=0.491 Sum_probs=37.6
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
...||.+|||||-.|+++|...+.. |.+|.|+|..-..|+.-.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~------GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH------GAKVALCELPFGLGGTCV 60 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc------CceEEEEecCCCcCceEE
Confidence 4579999999999999999999999 999999998756666543
No 466
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=96.62 E-value=0.0013 Score=63.31 Aligned_cols=48 Identities=19% Similarity=0.455 Sum_probs=34.1
Q ss_pred cccccccCCeeEEEEeecCceeEEEEc-cCCCccCCcccccCCCCCeeE
Q psy14496 500 GPEARYCPAGVYEFIIEKNKIQHLQIN-AQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 500 ~~c~~~CP~~~~~~~~~~~~~~~~~~~-~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
.-|..+||.+++.-.-......++..+ .++|++|+.|..+||.+++..
T Consensus 172 ~~C~~~CP~Ga~~~~~~~~~~~~i~~~~~~~C~~C~~C~~vCP~~~vl~ 220 (255)
T TIGR02163 172 GWCGHLCPLGAFYGLIGRKSLIKIAASDREKCTNCMDCFNVCPEPQVLR 220 (255)
T ss_pred chhhCcCCCcchhhhhhccCceEEEeeccccCeEcCCccCcCCCCceee
Confidence 459999999987422111112355555 899999999999999987543
No 467
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.61 E-value=0.059 Score=55.66 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEcc
Q psy14496 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAE 200 (561)
Q Consensus 131 ~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~Ad 200 (561)
++|.|.+.+.+.=.|..+..++.|.++..++++++.+|... |.+++++.||+..
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~----------------ge~v~~k~vI~dp 285 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE----------------GEVVKAKKVIGDP 285 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET----------------TEEEEESEEEEEG
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC----------------CEEEEcCEEEECC
Confidence 68999999888888999999999999998778888888762 5789999999643
No 468
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=96.59 E-value=0.00056 Score=74.50 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=35.3
Q ss_pred CCCCcccccccccccccccccCCeeEEEE-----eecCceeEEEEccCCCccCCcccccCCCC
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFI-----IEKNKIQHLQINAQNCIHCKTCDIKDPTQ 543 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~-----~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~ 543 (561)
+...|+. |+.|+.+||.+.+-.. ....-.....++...|++||.|..+||.+
T Consensus 368 ~e~~CI~------CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 368 PEQPCIR------CGACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPSN 424 (695)
T ss_pred chhhcCC------cccHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCcccccCCCC
Confidence 4567887 5779999999986310 00000012235667899999999999976
No 469
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.59 E-value=0.025 Score=64.65 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=72.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||..|+-+|..+.+. |.+|+++.+++...
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~------Ga~Vtlv~rr~~~~------------------------------------- 483 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRL------GGNVTIVYRRTKSE------------------------------------- 483 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEEecCccc-------------------------------------
Confidence 36899999999999999999999 99999998764210
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcC-CCCEEEEEecccc---ccc
Q psy14496 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDS-KNNVCGIATNNFG---INK 177 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~-~g~v~~V~~~~~~---~~~ 177 (561)
.| . ... ..+.+.+.|+++++++.++++..++ ++.+.+|++..+. .+.
T Consensus 484 ---------mp-----a--------------~~~-e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~ 534 (944)
T PRK12779 484 ---------MP-----A--------------RVE-ELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDK 534 (944)
T ss_pred ---------cc-----c--------------cHH-HHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccC
Confidence 00 0 001 1222446799999999999987543 3356666543211 123
Q ss_pred CCceecccc-cCeEEecCEEEEccCCCch
Q psy14496 178 EGIIKKNFQ-LGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 178 ~g~~~~~f~-~g~~i~ad~vV~AdG~~s~ 205 (561)
+|+.....+ +..++.+|.||.|-|....
T Consensus 535 ~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~ 563 (944)
T PRK12779 535 SGRRSPKPTGEIERVPVDLVIMALGNTAN 563 (944)
T ss_pred cCceeeecCCceEEEECCEEEEcCCcCCC
Confidence 343211111 1246999999999997754
No 470
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.50 E-value=0.019 Score=62.16 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=31.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
.-+|+|||||+.|+-+|..|++. |.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~------g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRY------ASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHcc------CCEEEEEEeCCc
Confidence 35899999999999999999999 999999998753
No 471
>KOG3851|consensus
Probab=96.48 E-value=0.0071 Score=57.95 Aligned_cols=40 Identities=20% Similarity=0.464 Sum_probs=33.2
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
...++.|+|||||-+|+++|..+.+.+ +.=+|.|+|..+.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl----~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKL----GSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhc----CCCceEEecchhh
Confidence 346799999999999999999998873 3458999997753
No 472
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=96.46 E-value=0.0021 Score=49.14 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=31.8
Q ss_pred eEEEEccCCCccCCcccccCCCCCeeEECCCCCCC-CCCC
Q psy14496 521 QHLQINAQNCIHCKTCDIKDPTQNIEWITPEGGSG-TNYP 559 (561)
Q Consensus 521 ~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g~~g-~~~~ 559 (561)
.+.++|++.|+.|+.|-.-||..+|.+ ...|..+ ++|.
T Consensus 28 ~rPv~d~~kCi~C~~C~~yCPe~~i~~-~~~~~~~~idYd 66 (91)
T COG1144 28 FRPVVDEDKCINCKLCWLYCPEPAILE-EEGGYKVRIDYD 66 (91)
T ss_pred EeeEEcccccccCceeEEECCchheee-ccCCccceeEcc
Confidence 367899999999999999999999998 5555555 6775
No 473
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=96.44 E-value=0.0014 Score=59.57 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=40.4
Q ss_pred ccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14496 499 AGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
.|+++.-||...++..+.-. .+..+|.++|++|+.|..+||.++|.....
T Consensus 11 ~g~~T~~yP~~~~~~~~~~r--g~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~ 60 (180)
T PRK12387 11 TGTATSSYPLEPIAVDKNFR--GKPEYNPQQCIGCAACVNACPSNALTVETD 60 (180)
T ss_pred cCCccccCCCCCCCCCCCCC--CceEEChhhCcChhHHHHhcCccCeEeecc
Confidence 47889999988877543212 368999999999999999999999988653
No 474
>KOG2495|consensus
Probab=96.40 E-value=0.016 Score=57.93 Aligned_cols=111 Identities=23% Similarity=0.397 Sum_probs=69.7
Q ss_pred cccEEEECchhHHHHHHHHHHhccccC--------CCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcccc
Q psy14496 22 EYDVIIVGGGPSGLSAAIRLKQLAIKK--------NKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNT 93 (561)
Q Consensus 22 ~~dVvIVGaGpAGLa~A~~La~~~~~~--------~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~ 93 (561)
-..++||||||.|.-.|-.|+....++ ...++|+++|..+..-.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~---------------------------- 269 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN---------------------------- 269 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH----------------------------
Confidence 478999999999999999987553111 11467777776653200
Q ss_pred ccchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccc
Q psy14496 94 PVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNF 173 (561)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~ 173 (561)
+++ ..|...-.++..+.|+++..++.|.++.. +...+++.
T Consensus 270 --------mFd--------------------------krl~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~-- 309 (491)
T KOG2495|consen 270 --------MFD--------------------------KRLVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTK-- 309 (491)
T ss_pred --------HHH--------------------------HHHHHHHHHHhhhccceeecccEEEeecC----cEEEEEcC--
Confidence 000 02333344444567999999999988842 22334432
Q ss_pred ccccCCceecccccCeEEecCEEEEccCCCch-hhHHHH
Q psy14496 174 GINKEGIIKKNFQLGMELYAKYTLFAEGSRGH-LSKQII 211 (561)
Q Consensus 174 ~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s~-~~~~l~ 211 (561)
+|+. .++.+-.+|.|+|.... +.+.+.
T Consensus 310 ----~g~~-------~~iPYG~lVWatG~~~rp~~k~lm 337 (491)
T KOG2495|consen 310 ----DGEI-------EEIPYGLLVWATGNGPRPVIKDLM 337 (491)
T ss_pred ----CCce-------eeecceEEEecCCCCCchhhhhHh
Confidence 3432 57899999999996654 444444
No 475
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.34 E-value=0.011 Score=63.20 Aligned_cols=109 Identities=27% Similarity=0.407 Sum_probs=77.0
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhhh
Q psy14496 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFL 103 (561)
Q Consensus 24 dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (561)
..+|||||.=||-+|..|... |.+|+|++-.+.. +++.+..
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~------Gm~~~Vvh~~~~l--------------MerQLD~------------------- 187 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDL------GMEVTVVHIAPTL--------------MERQLDR------------------- 187 (793)
T ss_pred CcEEEccchhhhHHHHHHHhC------CCceEEEeecchH--------------HHHhhhh-------------------
Confidence 369999999999999999999 9999999865532 1111000
Q ss_pred cCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceec
Q psy14496 104 SSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKK 183 (561)
Q Consensus 104 ~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~ 183 (561)
.--..|...+++.|++++.+...+++.. .+.+.+|+.
T Consensus 188 ----------------------------~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~------------- 224 (793)
T COG1251 188 ----------------------------TAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRF------------- 224 (793)
T ss_pred ----------------------------HHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEee-------------
Confidence 0123466667788999999887777753 445555554
Q ss_pred ccccCeEEecCEEEEccCCCchhhHHHHHHcCCCC
Q psy14496 184 NFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDN 218 (561)
Q Consensus 184 ~f~~g~~i~ad~vV~AdG~~s~~~~~l~~~~g~~~ 218 (561)
.+|..+.||+||.|+|.+-.+ .+.+..|+..
T Consensus 225 --~DG~~i~ad~VV~a~GIrPn~--ela~~aGlav 255 (793)
T COG1251 225 --ADGTEIPADLVVMAVGIRPND--ELAKEAGLAV 255 (793)
T ss_pred --cCCCcccceeEEEeccccccc--HhHHhcCcCc
Confidence 557899999999999987663 3444455544
No 476
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=96.31 E-value=0.0021 Score=56.13 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=41.8
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCc-eeEEEEccCCCccC---CcccccCCCCCeeEE
Q psy14496 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNK-IQHLQINAQNCIHC---KTCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~-~~~~~~~~~~C~~C---g~C~~~cp~~~i~~~ 548 (561)
+.+.|.++|+. ++.|+.+||.|+++++.. +. .++..+.=+.|.+= ..|..+||++|++..
T Consensus 76 ~v~V~~ekCiG------C~~C~~aCPfGai~~~~~-~~~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv 139 (165)
T COG1142 76 AVQVDEEKCIG------CKLCVVACPFGAITMVSY-PVAAKAVAVKCDLCAGREVGPACVEACPTEALELV 139 (165)
T ss_pred ceEEchhhccC------cchhhhcCCcceEEEEee-cCcchhhhhhcccccCccCCCceeeeCCHHHhhcc
Confidence 34558899999 577999999999998763 11 12233344445443 459999999998763
No 477
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=96.29 E-value=0.0008 Score=65.36 Aligned_cols=47 Identities=23% Similarity=0.491 Sum_probs=33.8
Q ss_pred cccccccCCeeEEEEeecCceeEEE-EccCCCccCCcccccCCCCCee
Q psy14496 500 GPEARYCPAGVYEFIIEKNKIQHLQ-INAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 500 ~~c~~~CP~~~~~~~~~~~~~~~~~-~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
..|..+||.+++.-.-......++. +|.++|++|+.|..+||.+++.
T Consensus 179 ~wC~~lCP~Ga~~~~~~~~~~~~i~~~d~~~C~~C~~C~~~CP~~~i~ 226 (271)
T PRK09477 179 GWCGHLCPLGAFYGLIGKKSLIRVKAHDRQKCTRCMDCFHVCPEPQVL 226 (271)
T ss_pred chhhccCCHHHHHHhcccccccccccCCcccCcccCCcCCcCCCccee
Confidence 4599999999764211111113455 8999999999999999988753
No 478
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=96.26 E-value=0.0018 Score=66.66 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCC
Q psy14496 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPT 542 (561)
Q Consensus 487 ~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~ 542 (561)
.+.|+. |+.|+.+||.++ .+.+ + ....|+.|+.|..+||.
T Consensus 230 ~~~Ci~------C~~Cv~vCP~gi-~~~~---~------~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 230 LGDCID------CNLCVQVCPTGI-DIRD---G------LQLECINCGLCIDACDD 269 (434)
T ss_pred CCCCCC------hhhhHHhCCCCC-EeCC---C------CchhChhhhHHHHhCCC
Confidence 456876 567999999994 3321 1 23689999999999994
No 479
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=96.24 E-value=0.0013 Score=66.15 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=41.8
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCC---------cccccCCCCCeeE
Q psy14496 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCK---------TCDIKDPTQNIEW 547 (561)
Q Consensus 482 ~~~~~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~cp~~~i~~ 547 (561)
+.++|.+.|+. |+.|+.+||.+++.++...+ ..++|.-|. .|+..||++++.|
T Consensus 208 iV~ID~dkCiG------Cg~CV~ACPygAI~~n~~~g-------~~~KCd~C~~Rie~G~pPaCVeaCP~~Ar~f 269 (492)
T TIGR01660 208 IVLIDQDKCRG------WRMCISGCPYKKIYFNWKTG-------KSEKCIFCYPRIEAGQPTVCSETCVGRIRYL 269 (492)
T ss_pred eEEEehhhccC------hHHHHHhCCCCCcEecCCCC-------ccccCCCChhHHhCCCCCcchhhcChhhhhh
Confidence 34468899998 46799999999988865311 346999995 7999999999766
No 480
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.19 E-value=0.052 Score=61.62 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=39.3
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecC--ceeEEEEccCCCccCCcccccCCCCC
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN--KIQHLQINAQNCIHCKTCDIKDPTQN 544 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~--~~~~~~~~~~~C~~Cg~C~~~cp~~~ 544 (561)
+.+.|..|.. -|+.|+.+||.+|....+..+ +...++...+.|++||.|+..||.++
T Consensus 884 ~~~rC~~C~~--~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~~~~~C~~CG~C~~~CP~~~ 942 (1019)
T PRK09853 884 EAARCLECNY--VCEKCVDVCPNRANVSIAVPGFQNRFQIVHLDAMCNECGNCAQFCPWNG 942 (1019)
T ss_pred cccccCCccc--ccchhhhhCCcccccccccCCcccCCceEEcCccCccccchhhhCCCCC
Confidence 5577888632 379999999999933222111 11234444599999999999999865
No 481
>KOG0063|consensus
Probab=96.17 E-value=0.0026 Score=63.34 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=39.6
Q ss_pred ceEEcCCCCcccc-cccccccccccccCC-----eeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14496 481 HLILKNKKIPIHI-NFSIYAGPEARYCPA-----GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 481 h~~~~~~~~c~~~-~~~~~~~~c~~~CP~-----~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
.|-|...+.|.-. | ..-|-++||. -|+++.. .-.+..+-|++||.|..+||..||.
T Consensus 7 riaiv~~d~ckpk~c----~~eck~~cpv~~~gk~ci~V~~------~~~ise~lCigcgicvkkcpf~ai~ 68 (592)
T KOG0063|consen 7 RIAIVSEDKCKPKKC----RQECKKSCPVVRTGKLCIEVTP------TAFISEELCIGCGICVKKCPFEAIQ 68 (592)
T ss_pred eEEEeeccccCchHH----HHHHHhcCCcccccceEEEEcC------cchhhHhhhccccceeeccCcceEE
Confidence 3444455555332 2 2458999996 3555543 2667889999999999999999996
No 482
>KOG1336|consensus
Probab=96.15 E-value=0.027 Score=57.29 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=32.8
Q ss_pred HCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14496 143 NMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 143 ~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
+.|+++++++.|+.++.. .. .|.+ .+|++++++.+|+|+|.
T Consensus 139 e~gIe~~~~t~v~~~D~~-~K---~l~~---------------~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 139 EKGIELILGTSVVKADLA-SK---TLVL---------------GNGETLKYSKLIIATGS 179 (478)
T ss_pred hcCceEEEcceeEEeecc-cc---EEEe---------------CCCceeecceEEEeecC
Confidence 579999999999999875 22 2333 45789999999999997
No 483
>KOG1238|consensus
Probab=96.05 E-value=0.0078 Score=63.55 Aligned_cols=39 Identities=36% Similarity=0.602 Sum_probs=35.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy14496 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63 (561)
Q Consensus 20 ~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~ 63 (561)
..+||.||||||-||..+|-.|++. |..+|.|+|++..+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn-----~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN-----PNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC-----CCceEEEEecCCCC
Confidence 4579999999999999999999886 57999999999766
No 484
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=96.04 E-value=0.0029 Score=56.11 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=23.5
Q ss_pred EEEEccCCCccCCcccccCCCCCeeEECC
Q psy14496 522 HLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 522 ~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
...++.+.||+|+.|+.+||.+||++..-
T Consensus 49 ~~~l~~~~CIgC~lCa~iCP~~aI~m~~~ 77 (172)
T COG1143 49 RHVLDRDKCIGCGLCANICPANAITMETA 77 (172)
T ss_pred eeeccccCCcchhHHHhhCCcCceEEEEc
Confidence 45556667999999999999999986443
No 485
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=95.90 E-value=0.0057 Score=66.88 Aligned_cols=58 Identities=12% Similarity=-0.001 Sum_probs=39.6
Q ss_pred eEEcCCCCcccccccccccccccccCC----eeEEEEeecCceeEEEE---ccCCCccCCcccccCCCCCee
Q psy14496 482 LILKNKKIPIHINFSIYAGPEARYCPA----GVYEFIIEKNKIQHLQI---NAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 482 ~~~~~~~~c~~~~~~~~~~~c~~~CP~----~~~~~~~~~~~~~~~~~---~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
....|.++|+. |+.|+++|=. +++.+..- +....+.. +.-.|..||.|..+||++||.
T Consensus 136 ~i~~d~~rCI~------C~rCvr~c~e~~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~ 200 (603)
T TIGR01973 136 LIKTEMTRCIH------CTRCVRFANEVAGVEDLGVIGR-GNNVEIGTYEGKTLESELSGNLIDICPVGALT 200 (603)
T ss_pred CeEecCCcCcc------ccHHHHHHHHhhCCceEEEecc-CCCCEEecCCCCCCCCcccCChHhhCCccccc
Confidence 34679999999 5789999953 45555432 11122222 123688999999999999985
No 486
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=95.89 E-value=0.0031 Score=65.62 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=35.0
Q ss_pred CCCCcccccccccccccccccCCeeEEEEe-----ecCceeEEEEccCCCccCCcccccCCCC
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVYEFII-----EKNKIQHLQINAQNCIHCKTCDIKDPTQ 543 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~~~~~-----~~~~~~~~~~~~~~C~~Cg~C~~~cp~~ 543 (561)
+.+.|+. |+.|..+||.+++...- ...-.....++...|++||.|..+||.+
T Consensus 361 ~~~~Ci~------Cg~C~~vCP~~l~p~~l~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 361 PEKPCIR------CGKCVQVCPMNLLPQQLNWLALADEFDEAEEHNLMDCIECGCCSYVCPSN 417 (435)
T ss_pred cCCcCcC------ccchhhhCccchhhHHHHHHhhhcccchhhcCCCCcCCcCCCcccccCCC
Confidence 4577887 57899999988542100 0000112345778999999999999975
No 487
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=95.83 E-value=0.0042 Score=43.46 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=8.8
Q ss_pred EEEEccCCCccCCcccccCCC
Q psy14496 522 HLQINAQNCIHCKTCDIKDPT 542 (561)
Q Consensus 522 ~~~~~~~~C~~Cg~C~~~cp~ 542 (561)
++++|.++|++||.|..+||.
T Consensus 1 ki~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 1 KIVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp -----TT------TTGGG-TT
T ss_pred CCccCcccCcCCcChHHHccc
Confidence 468899999999999999998
No 488
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.72 E-value=0.11 Score=56.50 Aligned_cols=39 Identities=18% Similarity=-0.037 Sum_probs=31.5
Q ss_pred cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC
Q psy14496 331 FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN 374 (561)
Q Consensus 331 ~~~v~lvGDAa~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~ 374 (561)
.++|+.+||++.. ..-+..|+.+|..+|..|.+.|.+..
T Consensus 409 ~~~Vfa~GD~~~g-----~~~v~~Av~~G~~aA~~i~~~L~g~~ 447 (564)
T PRK12771 409 RPGVFAGGDMVPG-----PRTVTTAIGHGKKAARNIDAFLGGEP 447 (564)
T ss_pred CCCEEeccCcCCC-----chHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3799999999742 23567899999999999999997543
No 489
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=95.72 E-value=0.0043 Score=49.33 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=25.6
Q ss_pred eEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 521 QHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 521 ~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
..+.+|+++|++|+.|..+||.++|++.
T Consensus 14 ~~~~i~~~~Ci~C~~Cv~~CP~~~i~~~ 41 (91)
T TIGR02936 14 FVTSIDQEKCIGCGRCYKVCGRDVLTLK 41 (91)
T ss_pred eeEEECHhHCCCcchHHHHcChhhceee
Confidence 4678899999999999999999999886
No 490
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=95.66 E-value=0.0048 Score=50.30 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=26.5
Q ss_pred eEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14496 521 QHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 521 ~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
..+.+|.++|++|+.|..+||.++|.+...
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~ 38 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLAMRID 38 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhccccc
Confidence 468889999999999999999999988643
No 491
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=95.63 E-value=0.0038 Score=35.71 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=18.1
Q ss_pred cCCCCcccccccccccccccccCCeeEE
Q psy14496 485 KNKKIPIHINFSIYAGPEARYCPAGVYE 512 (561)
Q Consensus 485 ~~~~~c~~~~~~~~~~~c~~~CP~~~~~ 512 (561)
+|.+.|.. ++.|+.+||.+|++
T Consensus 3 id~~~C~~------Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 3 IDPDKCIG------CGRCVEACPFDAIT 24 (24)
T ss_dssp EETTTSSS-------THHHHHSTTSSEE
T ss_pred EchHHCCC------cchhhhhcccccCC
Confidence 47888988 57899999999975
No 492
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=95.62 E-value=0.0049 Score=60.84 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=33.4
Q ss_pred CCcccccccccccccccccCCeeEEEEeec---------------CceeEEEEccCC-----Cc-----cCCcccccCCC
Q psy14496 488 KIPIHINFSIYAGPEARYCPAGVYEFIIEK---------------NKIQHLQINAQN-----CI-----HCKTCDIKDPT 542 (561)
Q Consensus 488 ~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~---------------~~~~~~~~~~~~-----C~-----~Cg~C~~~cp~ 542 (561)
+.|.. |+.|++.||.++++.+++. ++..+..+|..+ |. .||.|..+||+
T Consensus 205 ~fC~~------C~~C~~~CP~~Ai~~~~~psw~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~C~~C~~~CPf 278 (314)
T TIGR02486 205 KFCET------CGKCADECPSGAISKGGEPTWDPEDSNGDPPGENNPGLKWQYDGWRCLLFRCYNEGGGGCGVCQAVCPF 278 (314)
T ss_pred ccCcc------hhHHHhhCCccccCCCCCCcccccccccccccccCCCcccccchhhcccccccCCCCCCCCCCeeECCC
Confidence 56765 5789999999998765321 011123344445 45 59999999997
Q ss_pred C
Q psy14496 543 Q 543 (561)
Q Consensus 543 ~ 543 (561)
.
T Consensus 279 ~ 279 (314)
T TIGR02486 279 N 279 (314)
T ss_pred C
Confidence 5
No 493
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.61 E-value=0.002 Score=36.73 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=18.2
Q ss_pred EcCCCCcccccccccccccccccCCeeE
Q psy14496 484 LKNKKIPIHINFSIYAGPEARYCPAGVY 511 (561)
Q Consensus 484 ~~~~~~c~~~~~~~~~~~c~~~CP~~~~ 511 (561)
.+|+++|+. ++.|+++||.+|+
T Consensus 3 ~id~~~C~~------Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 3 VIDPDKCIG------CGDCVRVCPEGAI 24 (24)
T ss_pred EEChhhCcC------hhHHHHhcchhcC
Confidence 358899988 5789999999874
No 494
>KOG4716|consensus
Probab=95.55 E-value=0.013 Score=56.63 Aligned_cols=36 Identities=36% Similarity=0.658 Sum_probs=32.8
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC
Q psy14496 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60 (561)
Q Consensus 19 ~~~~~dVvIVGaGpAGLa~A~~La~~~~~~~~G~~V~ViEk~ 60 (561)
.+.+||.+|||||-+||+||-..+.. |.+|.++|--
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~------G~kV~~lDfV 51 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADL------GAKVACLDFV 51 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhc------CCcEEEEeec
Confidence 35679999999999999999999999 9999999843
No 495
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=95.53 E-value=0.0043 Score=61.01 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=34.7
Q ss_pred CCcccccccccccccccccCCeeEEEEeecCce--eEEEEccCCCc-------------cCCcccccCCCCCeeEECCCC
Q psy14496 488 KIPIHINFSIYAGPEARYCPAGVYEFIIEKNKI--QHLQINAQNCI-------------HCKTCDIKDPTQNIEWITPEG 552 (561)
Q Consensus 488 ~~c~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~--~~~~~~~~~C~-------------~Cg~C~~~cp~~~i~~~~p~g 552 (561)
+.|-. |..|+.+||++++.-...-... -.+.-..-.|. +|+.|..+||-. +|..++.
T Consensus 185 ~~Cg~------C~~CldaCPt~Al~~~~~~~~~~cis~lt~~~~~~p~e~r~~~~n~iygCd~C~~vCPwn--r~~~~~~ 256 (337)
T COG1600 185 DHCGS------CTRCLDACPTGALVAPYTVDARRCISYLTIEKGGAPEEFRPLIGNRIYGCDICQKVCPWN--RFAQLTS 256 (337)
T ss_pred ccChh------hHHHHhhCCcccccCCCccchhHHhhhhhhhccCCcHHHHHhccCceecCchHHHhCCcc--ccccccc
Confidence 56766 5679999999996532210000 01111222333 799999999976 6666654
Q ss_pred C
Q psy14496 553 G 553 (561)
Q Consensus 553 ~ 553 (561)
.
T Consensus 257 ~ 257 (337)
T COG1600 257 E 257 (337)
T ss_pred c
Confidence 3
No 496
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=95.51 E-value=0.0096 Score=67.11 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=39.3
Q ss_pred eEEcCCCCcccccccccccccccccC----CeeEEEEeecCceeEEEE---ccCCCccCCcccccCCCCCee
Q psy14496 482 LILKNKKIPIHINFSIYAGPEARYCP----AGVYEFIIEKNKIQHLQI---NAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 482 ~~~~~~~~c~~~~~~~~~~~c~~~CP----~~~~~~~~~~~~~~~~~~---~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
....|.+.|+. |+.|+++|= .+++.+..- +....+.. ..-.|.-||.|..+||++||+
T Consensus 144 ~i~~d~~rCI~------C~rCvr~c~ev~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~ 208 (797)
T PRK07860 144 QVLLDRERCVL------CARCTRFSDQIAGDPFIDLQER-GALQQVGIYEGEPFQSYFSGNTVQICPVGALT 208 (797)
T ss_pred ceeeccccccc------CcHHHHHHHhhcCCcEEEeeec-CCCCEEecCCCCCcCccccCCchhhCCccccc
Confidence 34578999999 578999995 245554321 11122222 234688999999999999996
No 497
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.44 E-value=0.21 Score=57.07 Aligned_cols=59 Identities=12% Similarity=0.289 Sum_probs=39.6
Q ss_pred CCCCcccccccccccccccccCCeeE-EEEe-ecCceeEEEEccCC-CccCCcccccCCCCCeeE
Q psy14496 486 NKKIPIHINFSIYAGPEARYCPAGVY-EFII-EKNKIQHLQINAQN-CIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 486 ~~~~c~~~~~~~~~~~c~~~CP~~~~-~~~~-~~~~~~~~~~~~~~-C~~Cg~C~~~cp~~~i~~ 547 (561)
+.+.|..|.. .|+.|+.+||.+++ .+.. .-.+ ....++.+. |++||.|..+||+++..+
T Consensus 879 ~~~rC~~c~~--~Cg~Cv~vCP~~Aii~i~~~~~~~-~~~~i~~d~~C~~CG~C~~vCP~~a~~~ 940 (1012)
T TIGR03315 879 ESQRCLECSY--VCEKCVDVCPNRANIVIYVPGFRD-QFQIVHLDGMCNECGNCATFCPYDGAPY 940 (1012)
T ss_pred ccccccCCCC--CCCChhhhCChhhhhccccccccC-CceeeecCccccccchHHHhCCCCcccc
Confidence 4578887543 58999999999974 3321 0011 122344444 999999999999998754
No 498
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.33 E-value=0.014 Score=60.75 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=42.5
Q ss_pred cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14496 125 NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 125 ~~~i~r~~l~~~L~~~a~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~s 204 (561)
.+.+..+.+...+...+...|.+|+++++|++|..++ +++ .|.+ ++|.+++||.||.|.....
T Consensus 203 ~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~v~~---------------~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 203 GLTVGMGGLSLALALAAEELGGEIRLNTPVTRIERED-GGV-TVTT---------------EDGETIEADAVISAVPPSV 265 (450)
T ss_dssp TEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEES-SEE-EEEE---------------TTSSEEEESEEEE-S-HHH
T ss_pred ceeecccchhHHHHHHHhhcCceeecCCcceeccccc-ccc-cccc---------------ccceEEecceeeecCchhh
Confidence 4444445555556666666677999999999998863 333 3444 3456899999999988543
Q ss_pred h
Q psy14496 205 H 205 (561)
Q Consensus 205 ~ 205 (561)
.
T Consensus 266 l 266 (450)
T PF01593_consen 266 L 266 (450)
T ss_dssp H
T ss_pred h
Confidence 3
No 499
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=95.29 E-value=0.0042 Score=59.68 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=25.9
Q ss_pred eEEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 521 QHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 521 ~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++..+|.+.|..||.|..+||++||+|.
T Consensus 165 ~~P~~~~E~c~gc~~cv~~C~~gAI~~~ 192 (317)
T COG2221 165 WKPKVDEELCRGCGKCVKVCPTGAITWD 192 (317)
T ss_pred ecCccCHHHhchhHhHHHhCCCCceeec
Confidence 4578899999999999999999999995
No 500
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=95.28 E-value=0.0088 Score=45.94 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=24.8
Q ss_pred EEEEccCCCccCCcccccCCCCCeeEE
Q psy14496 522 HLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 522 ~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+..++.+.|++|+.|..+||.++|.|.
T Consensus 19 ~~~i~~~~C~~C~~C~~~Cp~~ai~~~ 45 (78)
T TIGR02179 19 KPVVDKEKCIKCKNCWLYCPEGAIQED 45 (78)
T ss_pred EEEEcCCcCcChhHHHhhcCccceEec
Confidence 568899999999999999999999984
Done!