RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14496
(561 letters)
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 267 bits (683), Expect = 4e-84
Identities = 120/456 (26%), Positives = 193/456 (42%), Gaps = 61/456 (13%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIF 79
+EYDV+IVG GP+G SAA RL + + + VLEKGSE GA G + PR++
Sbjct: 1 MMEYDVVIVGAGPAGSSAARRLAKAG------LDVLVLEKGSEPGAKPCCGGGLSPRALE 54
Query: 80 ELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGK 139
EL P + V R F K + ++P YI+ + +W+ +
Sbjct: 55 ELIPDFD--EEIERKVTGARIYFPGEKVAIEVP---------VGEGYIVDRAKFDKWLAE 103
Query: 140 KAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFA 199
+AE G +++ G + ++ + V G+ E+ AK + A
Sbjct: 104 RAEEAGAELYPGTRVTGVIREDDGVVVGVRAG----------------DDEVRAKVVIDA 147
Query: 200 EGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYG 259
+G L++++ K + P+ Y++G+KE+ + G V + PLD G
Sbjct: 148 DGVNSALARKLGLK-----DRKPEDYAIGVKEVIE----VPDDGDVEEFLYGPLDVGPGG 198
Query: 260 GGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTIT 319
G+++ + + ++G + LD + E +R+K HP I K+L GGK + Y A I
Sbjct: 199 YGWIFPLGDGHANVGIGVLLDDPSLSPFL-ELLERFKEHPAIRKLLLGGKILEYAAGGIP 257
Query: 320 TGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKL 379
GG S P + DG +G AGF+N +GI +IKSG L A++I + + L
Sbjct: 258 EGGPASRP-LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGGE--EAL 314
Query: 380 ITYKTSFQASWLYKELYKARNFKPAMKKGLYIGMLIIGIDQILFSGKFPFTLHNINSDYT 439
Y+ + S ++L R K ++ L L I + + D
Sbjct: 315 AEYERLLRKSLAREDLKSLRLLKLLLR--LLDRTLPALIKLLA------------DKDLL 360
Query: 440 YLEPASKHIPIKYPNPDNKLT-FDKLSSIYVSNINH 474
L I YP L FD L S+ S
Sbjct: 361 GLIKKYLRKLILYPLLKGVLARFDLLKSVKRSLTAL 396
>gnl|CDD|218485 pfam05187, ETF_QO, Electron transfer flavoprotein-ubiquinone
oxidoreductase. Electron-transfer
flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the
inner mitochondrial membrane accepts electrons from
electron-transfer flavoprotein which is located in the
mitochondrial matrix and reduces ubiquinone in the
mitochondrial membrane. The two redox centres in the
protein, FAD and a [4Fe4S] cluster, are present in a
64-kDa monomer.
Length = 110
Score = 176 bits (450), Expect = 2e-53
Identities = 59/107 (55%), Positives = 78/107 (72%)
Query: 408 GLYIGMLIIGIDQILFSGKFPFTLHNINSDYTYLEPASKHIPIKYPNPDNKLTFDKLSSI 467
GL++G+ G+DQ + GK P+TL + D+ L+PAS+ PI YP PD KLTFD+LSS+
Sbjct: 1 GLWLGLAYAGLDQWILRGKSPWTLKHHKPDHAALKPASECKPIDYPKPDGKLTFDRLSSV 60
Query: 468 YVSNINHDEDQPIHLILKNKKIPIHINFSIYAGPEARYCPAGVYEFI 514
++SN NH+EDQP HL LK+ +PI +N YAGPE RYCPAGVYE +
Sbjct: 61 FLSNTNHEEDQPCHLKLKDPSVPIAVNLPKYAGPEQRYCPAGVYEIV 107
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 92.3 bits (229), Expect = 5e-20
Identities = 92/397 (23%), Positives = 170/397 (42%), Gaps = 44/397 (11%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL 81
++D I+VG G +G AA+ + + + + V+E+G G ++G + ++ +
Sbjct: 5 KFDAIVVGAGVAGSVAALVMARAGLD------VLVIERGDSAGCKNMTGGRLYAHTLEAI 58
Query: 82 FPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKA 141
P + V E+ FL+ + + + H +Y + + L W+ ++A
Sbjct: 59 IPGFAASAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQA 118
Query: 142 ENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGME-LYAKYTLFAE 200
E G G ++ + N V G+ Q G + L A + A+
Sbjct: 119 EQAGAQFIPGVRVDALVREG-NKVTGV-----------------QAGDDILEANVVILAD 160
Query: 201 GSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKL--------HKKGLVIHTIGWP 252
G L + + + DP Y++G+KE+ + P+ ++G G P
Sbjct: 161 GVNSMLGRSL----GMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSP 216
Query: 253 LDYKTYGGGFLYHMENNQISIGYIISL-DYKNPYLSPFEEFQRYKTHPKICKILKGGKRI 311
D GGGFLY + IS+G + L D + S + + +K HP I ++ GGK +
Sbjct: 217 SD-GLMGGGFLY-TNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLL 274
Query: 312 SYGARTITTGGLQSLPEFIFDGGAFIGCNAGF-MNVS-RIKGIHTSIKSGILVADS-IFK 368
Y A + GGL +P+ + DG +G AGF +N+ ++G+ +I S A + I
Sbjct: 275 EYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAA 334
Query: 369 KICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405
K ++ + L YK + S + +++ R PA+
Sbjct: 335 KERADFSASSLAQYKRELEQSCVMRDMQHFRKI-PAL 370
>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.
Length = 428
Score = 85.0 bits (210), Expect = 1e-17
Identities = 87/368 (23%), Positives = 160/368 (43%), Gaps = 43/368 (11%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELF 82
+D IIVG G +G AA+ L + + ++ V+E+G+ GA ++G + S+ +
Sbjct: 6 FDAIIVGAGLAGSVAALVLAR------EGAQVLVIERGNSAGAKNVTGGRLYAHSLEHII 59
Query: 83 PKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAE 142
P + + E+ F++ K + + + +Y + S W+ ++AE
Sbjct: 60 PGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAE 119
Query: 143 NMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202
G + +G ++ V G+ +G + + AK + A+G
Sbjct: 120 EAGAQLITGIRVDNLVQRDGKVV--------GVEADGDV---------IEAKTVILADGV 162
Query: 203 RGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPK---------LHKKGLVIHTIGWPL 253
L++ K + + P ++G+KEL + PK +G G P
Sbjct: 163 NSILAE----KLGMAKRVKPTDVAVGVKELIEL-PKSVIEDRFQLQGNQGAACLFAGSPT 217
Query: 254 DYKTYGGGFLYHMENNQISIGYIISLDY-KNPYLSPFEEFQRYKTHPKICKILKGGKRIS 312
D GGGFLY EN +S+G + L + + S + + +K HP + ++ GGK +
Sbjct: 218 D-GLMGGGFLYTNENT-LSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVE 275
Query: 313 YGARTITTGGLQSLPEFIFDGGAFIGCNAGF-MNVS-RIKGIHTSIKSGILVADSIFKKI 370
Y A + G+ LPE + DG G AG MN+ I+G+ +I +G A ++ +
Sbjct: 276 YSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAM 335
Query: 371 CSNNKFNK 378
S++ F+K
Sbjct: 336 KSDD-FSK 342
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 55.5 bits (134), Expect = 4e-08
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
DV I+G G SGL+AA LKQ + + EK ++G
Sbjct: 9 TDVAIIGAGQSGLAAAYALKQAGVP-----DFVIFEKRDDVG 45
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 53.9 bits (130), Expect = 7e-08
Identities = 73/353 (20%), Positives = 133/353 (37%), Gaps = 67/353 (18%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL- 81
YDV++VG GP+G SAA RL K +++ +LEK S + G + PR++ EL
Sbjct: 1 YDVVVVGAGPAGASAAYRLAD------KGLRVLLLEKKSFPR-YKPCGGALSPRALEELD 53
Query: 82 FPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKA 141
P E L V RF F + S +IP + Y+I + ++A
Sbjct: 54 LPGE----LIVNLVRGARF-FSPNGDSVEIPI-------ETELAYVIDRDAFDEQLAERA 101
Query: 142 ENMGIDIFSG-FSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAE 200
+ G ++ G ++D + V + + AK + A+
Sbjct: 102 QEAGAELRLGTRVLDVEIHDDRVVV--------IVRGSEG---------TVTAKIVIGAD 144
Query: 201 GSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTIN--PKLHKKGLVIHTIGWPLDYKTY 258
GSR ++K+ L KK+P+ Y + + + V I
Sbjct: 145 GSRSIVAKK------LGLKKEPREYGVAARAEVEMPDEEVDEDFVEVY--IDR--GIVPG 194
Query: 259 GGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRY-KTHP--KICKILKGGKRISYGA 315
G G+++ + ++G + P + + + P K + ++ GA
Sbjct: 195 GYGWVFPKGDGTANVGVGSRSAEE--GEDPKKYLKDFLARRPELKDAETVE-----VCGA 247
Query: 316 RTITTGGLQSL--PEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSI 366
+ L + G A AG +N +GI+ +++SG + A+ +
Sbjct: 248 LIPIGRPDEKLVRGNVLLVGDA-----AGHVNPLTGEGIYYAMRSGDIAAEVV 295
>gnl|CDD|225289 COG2440, FixX, Ferredoxin-like protein [Energy production and
conversion].
Length = 99
Score = 49.3 bits (118), Expect = 1e-07
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 462 DKLSSIYVSNINHDEDQPIHLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQ 521
+KL V+ N DED P H+I+K+ P + CPAG Y+ I +
Sbjct: 11 EKL---SVNRYNVDEDHP-HIIVKDP----DDCQECEDKPLIKACPAGCYKLIDDGK--- 59
Query: 522 HLQINAQNCIHCKTCDIKDP-TQNIEWITPEGGSGTNY 558
L+ + + C+ C TC + P + I+W P GG G Y
Sbjct: 60 -LRFDYEGCLECGTCRVLCPHSGLIQWRYPRGGFGITY 96
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 52.8 bits (127), Expect = 2e-07
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78
DV IVG GP+GL+ A+ L + + + +LE+ G + P ++
Sbjct: 3 LDVAIVGAGPAGLALALALARAG------LDVTLLERAPRELLERGRGIALSPNAL 52
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP
to RuBP, flavoprotein [Carbohydrate transport and
metabolism].
Length = 262
Score = 51.9 bits (125), Expect = 2e-07
Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 42/160 (26%)
Query: 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77
+ +E DVIIVG GPSGL+AA L + +K+ + E+ G I G +
Sbjct: 26 LDYLESDVIIVGAGPSGLTAAYYLAK------AGLKVAIFERKLSFGGGIWGGGM----- 74
Query: 78 IFELFPKEKLNKLFNTPVIEE---RFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLV 134
LFN V+ E L + I ++ + ++D
Sbjct: 75 ------------LFNKIVVREEADEIL-----DEFGIR-------YEEEEDGYY-VADSA 109
Query: 135 RWMGK---KAENMGIDIFSGFSASEILYDSKNNVCGIATN 171
+ K +A + G IF+G S +++ V G+ N
Sbjct: 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVN 149
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is
involved in the biosynthesis of the thiamine precursor
thiazole, and is repressed by thiamine. This family
includes c-thi1, a Citrus gene induced during natural
and ethylene induced fruit maturation and is highly
homologous to plant and yeast thi genes involved in
thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 50.2 bits (120), Expect = 9e-07
Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 39/167 (23%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78
+ E DVIIVG GPSGL+AA L + +K+CVLE+ G G +
Sbjct: 18 DYAESDVIIVGAGPSGLTAAYYLAK------NGLKVCVLERSLAFGGGSWGGGM------ 65
Query: 79 FELFPKEKLNKLFNTPVIE-ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWM 137
LF+ V+E L I +++ G+ + ++D ++
Sbjct: 66 -----------LFSKIVVEKPAHEILDE----------FGIRYEDEGDGYV-VADSAEFI 103
Query: 138 GK---KAENMGIDIFSGFSASE-ILYDSKNNVCGIATNNFGINKEGI 180
KA G IF+G S + I D V G+ N I G+
Sbjct: 104 STLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGL 150
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 50.4 bits (121), Expect = 1e-06
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 28/110 (25%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG------------------AH 66
+ I+GGG +GLSAA RL+ K ++++ + E +G
Sbjct: 3 IAIIGGGIAGLSAAYRLQ----KAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHF 58
Query: 67 ILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWIL 116
+ I I EL ++KL L+N+ R K + IP+ +
Sbjct: 59 LARKEEI-LDLIKELGLEDKL--LWNST---ARKYIYYDGKLHPIPTPTI 102
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 47.5 bits (114), Expect = 6e-06
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78
+ +E DV IVG GPSGL+AA LA +K+ V E+ G + G +
Sbjct: 22 DYLEVDVAIVGAGPSGLTAA---YYLA---KAGLKVAVFERKLSFGGGMWGGGM------ 69
Query: 79 FELFPK 84
LF K
Sbjct: 70 --LFNK 73
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 47.6 bits (114), Expect = 1e-05
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
EYDV+++G GP+G AAIR QL +K+ ++EKG LG
Sbjct: 1 MMKEYDVVVIGAGPAGYVAAIRAAQLG------LKVALVEKGERLG 40
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 47.3 bits (113), Expect = 1e-05
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-GAIIDPRSIFE 80
E DV+IVGGGP+GL A+ L + +++ ++E+ + +L ++ R+ E
Sbjct: 1 ETDVLIVGGGPAGLMLALLLARAG------VRVVLVERHAT--TSVLPRAGGLNQRT-ME 51
Query: 81 LF 82
L
Sbjct: 52 LL 53
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 47.4 bits (113), Expect = 1e-05
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66
E+DV+++GGG +GL AAI +K+ +L K H
Sbjct: 3 TIHEFDVVVIGGGGAGLRAAIEA------AEAGLKVALLSKAPPKRGH 44
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 46.1 bits (110), Expect = 3e-05
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67
DV+++G G +GL+AA+ A + K+ V+EKG G
Sbjct: 1 DVVVIGSGLAGLAAALE----AAEAGL--KVAVVEKGQPFGGAT 38
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 41.7 bits (99), Expect = 3e-05
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 27 IVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69
IVG G SGL AA L K+ K + VLEK +G + S
Sbjct: 1 IVGAGLSGLVAAYLLA----KRGK--DVLVLEKRDRIGGNAYS 37
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 45.9 bits (109), Expect = 4e-05
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
YDV+++G G +GL+AA L + +K+ VLEK +G
Sbjct: 1 MPMYDVVVIGAGLNGLAAAALLAR------AGLKVTVLEKNDRVG 39
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 45.0 bits (107), Expect = 6e-05
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 6/42 (14%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
YDVII+GGGP+GL+AAI + +K+ ++ +G E G
Sbjct: 4 YDVIIIGGGPAGLTAAIYAAR------AGLKVVLILEGGEPG 39
>gnl|CDD|221801 pfam12838, Fer4_7, 4Fe-4S dicluster domain. Superfamily includes
proteins containing domains which bind to iron-sulfur
clusters. Members include bacterial ferredoxins, various
dehydrogenases, and various reductases. Structure of the
domain is an alpha-antiparallel beta sandwich. Domain
contains two 4Fe4S clusters.
Length = 48
Score = 39.8 bits (93), Expect = 8e-05
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 503 ARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTC 536
R CP G E K ++I+ C C C
Sbjct: 8 VRACPYGAITLDEEGGKKGTVEIDPDKCTGCGAC 41
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 43.6 bits (103), Expect = 1e-04
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 39/154 (25%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL 81
E DV+IVG GPSGL+AA L + K +K+ ++E+ G G
Sbjct: 17 ESDVVIVGAGPSGLTAAYYLAK------KGLKVAIIERSLSPGGGAWGGG---------- 60
Query: 82 FPKEKLNKLFNTPVIE-ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGK- 139
LF+ V+ FL I +++ G+Y++ ++D +
Sbjct: 61 -------MLFSAMVVRKPADEFLDE----------FGIRYEDEGDYVV-VADAAEFTSTL 102
Query: 140 --KAENMGIDIFSGFSASEILYDSKNNVCGIATN 171
KA G+ IF+ S E L N V G+ TN
Sbjct: 103 ASKALQPGVKIFNATSV-EDLIIRDNRVAGVVTN 135
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4,) and UbiF (which acts at position 5,). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6,) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 387
Score = 44.5 bits (106), Expect = 1e-04
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78
D++IVGGGP GL+ A LA+ ++ +K+ ++E L A G D R
Sbjct: 1 DIVIVGGGPVGLALA-----LALARSGGLKVALIEATP-LPAPADPGF--DNRVS 47
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 44.5 bits (106), Expect = 1e-04
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 7/49 (14%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SG 70
+DVII+GGGP+GL AAI + ++ +++KG +LG IL SG
Sbjct: 4 FDVIIIGGGPAGLMAAISAAKA------GRRVLLIDKGPKLGRKILMSG 46
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 44.4 bits (106), Expect = 1e-04
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+YDVI++G GP+G AA R +L K+ ++EKG LG
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAKL------GKKVALIEKG-PLG 38
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 43.7 bits (104), Expect = 2e-04
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66
YD +I+GGG GLS A++L++ + +I VLEK S H
Sbjct: 3 YDFVIIGGGIVGLSTAMQLQE----RYPGARIAVLEKESGPARH 42
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 43.9 bits (104), Expect = 2e-04
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 10/55 (18%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAI 72
+ +E D++++GGG +G AAI+ K+ +N +++ +LEK A++ SGAI
Sbjct: 6 QEVETDILVIGGGTAGPMAAIKAKE----RNPALRVLLLEK-----ANVKRSGAI 51
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 43.3 bits (102), Expect = 2e-04
Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 19/134 (14%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS--ELGAHILSGAIIDPRS 77
S++ DV+I+GGG GLSAA L + + VLE G A +G I+ P
Sbjct: 2 SMKMDVVIIGGGIVGLSAAYYLAERG------ADVTVLEAGEAGGGAAGRNAGGILAP-- 53
Query: 78 IFELFPKEKLNKLFNTPVI---EERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLV 134
+ E + + E L + +L + + + L
Sbjct: 54 -WASPGGELEVRPLADLSLALWRELSEELGTGAGL-RRRGLLDLAAREGLKGLAQL---- 107
Query: 135 RWMGKKAENMGIDI 148
+ + E G D
Sbjct: 108 ERLAAELEAAGEDA 121
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 43.4 bits (103), Expect = 3e-04
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
I+ V+++G GP+G SAA R L ++ +CV E+ S LG
Sbjct: 2 EIKTQVVVLGAGPAGYSAAFRAADLGLE-----TVCV-ERYSTLG 40
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 43.3 bits (103), Expect = 3e-04
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 7/49 (14%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SG 70
YDVI++GGG +GL AAI + + ++ +++KG +LG IL SG
Sbjct: 1 YDVIVIGGGAAGLMAAISAAK------RGRRVLLIDKGKKLGRKILISG 43
>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional.
Length = 493
Score = 43.2 bits (102), Expect = 3e-04
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 23/95 (24%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGA-IIDPRSIF 79
++Y+VII+GGGP GL A +LA+ +K CV+E+ E + S A + PR++
Sbjct: 1 MKYEVIIIGGGPVGLMLA---SELALAG---VKTCVIERLKETVPY--SKALTLHPRTL- 51
Query: 80 ELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSW 114
++ + + ERFL +K K+PS
Sbjct: 52 ---------EILDMRGLLERFL----EKGRKLPSG 73
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 43.4 bits (103), Expect = 3e-04
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIK 47
+ EYD++I+GGGP G AAIR QL +K
Sbjct: 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLK 29
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 42.5 bits (100), Expect = 5e-04
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIK 47
YDV+I+GGGP G +AAIR QL +K
Sbjct: 3 SYDVVIIGGGPGGYNAAIRAGQLGLK 28
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 41.9 bits (99), Expect = 6e-04
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78
D+++VG GP+GLS A L +K+ ++E+ L+ D R I
Sbjct: 4 SDIVVVGAGPAGLSFARSLAGSG------LKVTLIERQPL---AALADPAFDGREI 50
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model
when searched with a partial length search brings in
proteins with a dinucleotide-binding motif (Rossman
fold) over the initial 40 residues of the model,
including oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 41.8 bits (99), Expect = 7e-04
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 26 IIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SG 70
II+GGG +GL AAI A ++ + +LEK ++G +L SG
Sbjct: 1 IIIGGGAAGLMAAIT----AAREGL--SVLLLEKNKKIGKKLLISG 40
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 41.7 bits (99), Expect = 8e-04
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIK 47
+ EYDVI++G GP G AAIR QL +K
Sbjct: 2 AFEYDVIVIGAGPGGYVAAIRAAQLGLK 29
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 41.8 bits (99), Expect = 8e-04
Identities = 9/21 (42%), Positives = 18/21 (85%)
Query: 21 IEYDVIIVGGGPSGLSAAIRL 41
+++DV+++GGG +GL+AA+
Sbjct: 1 MKFDVLVIGGGLAGLTAALAA 21
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 40.7 bits (96), Expect = 9e-04
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66
DV+++GGG GLS A L + + + + +LE+G +L +
Sbjct: 1 DVVVIGGGIVGLSTAYELAR------RGLSVTLLERG-DLASG 36
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 41.0 bits (97), Expect = 0.001
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
V I+GGG +GLSAA RL KK + I +LE LG
Sbjct: 3 VAIIGGGITGLSAAYRLH----KKGPDADITLLEASDRLG 38
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 39.1 bits (92), Expect = 0.001
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 27 IVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65
I+G GP GLS RL L ++ + I V + S GA
Sbjct: 2 IIGAGPRGLSVLERL--LRRAPDRPLDITVFDP-SPPGA 37
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 40.4 bits (95), Expect = 0.001
Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 6/36 (16%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
DV+I+GGGP+GL+AAIRL + +K+ ++E+
Sbjct: 1 DVVIIGGGPAGLAAAIRLAR------LGLKVALIER 30
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the
E3 component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to
have distinct functions (ferric leghemoglobin reductase
and NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 40.7 bits (96), Expect = 0.002
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIK 47
YDVI++GGGP G AAIR QL +K
Sbjct: 1 AYDVIVIGGGPGGYVAAIRAAQLGLK 26
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 40.0 bits (94), Expect = 0.003
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69
E ++YDV+IVG G +GL AA+ A + ++ + V+ K + +H +S
Sbjct: 2 EVLKYDVVIVGSGLAGLRAAV---AAAERSGGKLSVAVVSKTQPMRSHSVS 49
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 39.7 bits (93), Expect = 0.003
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62
EYD +IVG G +G A RL + + + VLE G
Sbjct: 7 EYDYVIVGSGSAGSVLAARL------SDAGLSVLVLEAGGP 41
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase.
This model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This
family is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 39.6 bits (93), Expect = 0.003
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78
DVIIVGGG GLS A+ L +L +IKI ++E S A D RS+
Sbjct: 1 DVIIVGGGLVGLSLALALSRLG-----KIKIALIEANSPSAAQ----PGFDARSL 46
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 39.8 bits (94), Expect = 0.004
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+YD++++G GP+G AA+ Q A K K ++ V+E+ +G
Sbjct: 2 HMYDYDLVVIGSGPAGEGAAM---QAA-KLGK--RVAVIERYRNVG 41
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 39.6 bits (93), Expect = 0.004
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 18 RESIEYDVIIVGGGPSGLSAAIRLKQ 43
+++DV++VGGG G S A+ L Q
Sbjct: 1 AYHMKFDVVVVGGGLVGASLALALAQ 26
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 39.6 bits (93), Expect = 0.004
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63
D++IVG G +GL A+RL+Q +++ +++ G
Sbjct: 1 DLVIVGAGLAGLLLALRLRQAR----PGLRVLLIDAGPGP 36
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 39.4 bits (92), Expect = 0.005
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPR-- 76
+ V+++GGG +G++AA+ L + K+ ++EK +G + P
Sbjct: 121 VEVSKSVLVIGGGVAGITAALELADMG------FKVYLVEKEPSIGGRMAKLNKTFPTND 174
Query: 77 -SIFELFPKEKLNKLFNTPVIE 97
SI L P K+ ++ N P IE
Sbjct: 175 CSICILAP--KMVEVSNHPNIE 194
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 39.5 bits (93), Expect = 0.005
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 10/53 (18%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAI 72
++ D++I+GGG +G AA K + ++K+ ++EK A+I SGA+
Sbjct: 10 VDTDILIIGGGMAGCGAAFEAK----EWAPDLKVLIVEK-----ANIKRSGAV 53
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This
family of proteins contains FAD dependent
oxidoreductases and related proteins.
Length = 415
Score = 39.1 bits (92), Expect = 0.005
Identities = 11/16 (68%), Positives = 16/16 (100%)
Query: 24 DVIIVGGGPSGLSAAI 39
DV++VGGGP+G++AAI
Sbjct: 1 DVVVVGGGPAGVAAAI 16
>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family
oxidoreductase 2. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp., in Pelotomaculum
thermopropionicum SI (Firmicutes), and in Geobacter
uraniireducens Rf4 (Deltaproteobacteria). The function
of this oxidoreductase is unknown.
Length = 645
Score = 39.3 bits (92), Expect = 0.005
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIF 79
V++VGGGP+GL AA A + + ++ + E+ LG + A + R F
Sbjct: 382 VLVVGGGPAGLEAA---ATAARRGH---RVTLFEREDRLGGQVRLAARLPGRGEF 430
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 39.0 bits (92), Expect = 0.006
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 23 YDVIIVGGGPSGLSAAI 39
YDV++VGGGP+G +AAI
Sbjct: 212 YDVLVVGGGPAGAAAAI 228
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 38.8 bits (91), Expect = 0.006
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 19/75 (25%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAI---------- 72
+DVII+GGG +GLS A+RL + K C + + H SG++
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKK-------CAIIAAGQSALHFSSGSLDLLSRLPDGQ 53
Query: 73 --IDPRSIFELFPKE 85
P E ++
Sbjct: 54 AVEQPMDALEALAQQ 68
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with
an active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 38.3 bits (90), Expect = 0.007
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61
DVII+G GP GL+ AI ++ + ++EKG+
Sbjct: 1 DVIIIGAGPCGLACAIEAQK------AGLSYLIIEKGN 32
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one
C subunit in the genome and that genome is lacking the
F subunit partner (also a thioredcxin reductase
homolog) that is usually found (TIGR03140).
Length = 555
Score = 38.6 bits (90), Expect = 0.007
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
Query: 23 YDVIIVGGGPSGLSAAI-----RLKQLAIKKNK 50
YD+II+GGGP+GLSA I +L L I+K+
Sbjct: 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 38.3 bits (90), Expect = 0.008
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 23 YDVIIVGGGPSGLSAAIRL 41
D+ ++GGGP+GL+AAI L
Sbjct: 8 TDIAVIGGGPAGLAAAIAL 26
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 38.6 bits (90), Expect = 0.009
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 501 PEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDP 541
P AR CP G I + +Q+N Q CI CK+C + P
Sbjct: 63 PCARSCPNGA---ISHVD--DSIQVNQQKCIGCKSCVVACP 98
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 38.3 bits (90), Expect = 0.009
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 25 VIIVGGGPSGLSAAIRLKQ 43
V++VG GP GL+ AI L Q
Sbjct: 26 VVVVGAGPVGLALAIDLAQ 44
>gnl|CDD|188511 TIGR03996, mycofact_OYE_1, mycofactocin system FadH/OYE family
oxidoreductase 1. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp. The function of this
oxidoreductase is unknown.
Length = 633
Score = 38.4 bits (89), Expect = 0.011
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 16 GPRESIEY--DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAII 73
DV++VGGGP+GL AA + LA + + ++ + E+ + LG + A
Sbjct: 364 DEGGRAATPGDVLVVGGGPAGLEAA---RVLAARGH---RVTLAERSAHLGGMLRIAARG 417
Query: 74 DPRSIFELF 82
Sbjct: 418 PGLHRLAAL 426
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 38.2 bits (89), Expect = 0.011
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQ 43
+ +DV I+GGG +GL+ + L+Q
Sbjct: 1 MNFDVAIIGGGLAGLTCGLALQQ 23
>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase
(NADPH-requiring). This is family of Rossmann fold
oxidoreductases that catalyzes the NADPH-dependent
hydroxylation of lysine at the N6 position,
EC:1.14.13.59.
Length = 335
Score = 37.9 bits (89), Expect = 0.011
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH---ILSGA 71
YD+I +G GP LS A L+++ E++ E+ E H +L GA
Sbjct: 3 YDLIGIGIGPFNLSLAALLEEI-----PELRALFFERQPEFDWHPGMLLPGA 49
>gnl|CDD|132372 TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase.
This clade of sequences are members of the pfam01266
family of FAD-dependent oxidoreductases. Characterized
proteins within this family include
glycerol-3-phosphate dehydrogenase (1.1.99.5),
sarcosine oxidase beta subunit (1.5.3.1) and a number
of deaminating amino acid oxidases (1.4.-.-). These
genes have been consistently observed in a genomic
context including genes for the import and catabolism
of 2-aminoethylphosphonate (AEP). If the substrate of
this oxidoreductase is AEP itself, then it is probably
acting in the manner of a deaminating oxidase,
resulting in the same product (phosphonoacetaldehyde)
as the transaminase PhnW (TIGR02326), but releasing
ammonia instead of coupling to pyruvate:alanine.
Alternatively, it is reasonable to suppose that the
various ABC cassette transporters which are also
associated with these loci allow the import of
phosphonates closely related to AEP which may not be
substrates for PhnW.
Length = 460
Score = 38.2 bits (89), Expect = 0.011
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
+ DV IVGGG +GL AI +KQ + + + VLE
Sbjct: 20 VGDTQADVCIVGGGFTGLWTAIMIKQ----QRPALDVLVLEAD 58
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 38.0 bits (89), Expect = 0.012
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66
+YDV+I+GGG G + A L + + + + +LEK +
Sbjct: 3 DYDVVIIGGGIMGAATAYELSEY--EPDLSVA--LLEKEDGVAQE 43
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 37.9 bits (88), Expect = 0.012
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69
++I+G G +GL+AA +L + + ++ V+E G +G I +
Sbjct: 8 IVIIGAGMAGLTAANKLYTSSAANDM-FELTVVEGGDRIGGRINT 51
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 37.8 bits (88), Expect = 0.013
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
D+ ++GGGP+GL+ A+ L + +++ ++E +
Sbjct: 1 DLAVIGGGPAGLAIALELARP------GLRVQLIEPHPPIP 35
>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases
specific for the biosyntheses of bacteriochlorophyll
and chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction
of the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ) [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 388
Score = 37.8 bits (88), Expect = 0.014
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAI------KKNKEIKIC 55
YDV ++GGGPSG +AA L + I + IK C
Sbjct: 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPC 39
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 37.6 bits (88), Expect = 0.014
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIK 47
S ++DV+++G GP G AAIR QL +K
Sbjct: 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLK 29
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 37.7 bits (88), Expect = 0.015
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 1 MNYISSLNHSLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
++H DV+IVG GP+GL AA L A +K +KI V++ G
Sbjct: 1 SEIKLPIDHDQEALMNAA----LDVVIVGAGPAGLFAAYELSGDA-RKVPILKIYVVDVG 55
Query: 61 SELGAHILSGAIIDPRSIFELFPKE 85
++ +
Sbjct: 56 LDIEQRLCPK-DEKKLEKCPKCDPC 79
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 37.5 bits (88), Expect = 0.015
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIK 47
V+IVGGG GLSAAI L++ I
Sbjct: 6 KVLIVGGGIGGLSAAIALRRAGIA 29
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 37.5 bits (87), Expect = 0.017
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK------GSELGAHILSGAII 73
+ DV+IVG G +GLS A L KN +K+ ++E+ G+ LG + S ++
Sbjct: 92 DTDVVIVGAGSAGLSCAYEL-----SKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVV 144
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 37.4 bits (87), Expect = 0.017
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65
+ V I+GGG SG+ A L + I + E G
Sbjct: 2 FKVAIIGGGFSGIYMAAHLLKSP---RPSGLISIFEPRPNFGQ 41
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 37.7 bits (88), Expect = 0.017
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 18 RESIEYDVIIVGGGPSGLSAAIRL 41
+ E V+IVGGGP GL+ A+ L
Sbjct: 3 ENTSETPVLIVGGGPVGLALALDL 26
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 37.5 bits (87), Expect = 0.019
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
P + YDV++VG G GLSAA+ K+ V+EK S G
Sbjct: 3 PSMTHTYDVVVVGSGAGGLSAAVAAAYGG------AKVLVVEKASTCG 44
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 37.0 bits (86), Expect = 0.028
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 23 YDVIIVGGGPSGLSAAI 39
YDV++VGGGP+G +AAI
Sbjct: 213 YDVLVVGGGPAGAAAAI 229
Score = 29.3 bits (66), Expect = 6.3
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65
DV ++GGG SG+ AAI L + + VLE EL A
Sbjct: 354 DVAVIGGGNSGIEAAIDLAGIV------RHVTVLEFADELKA 389
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 36.9 bits (86), Expect = 0.028
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 16 GPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69
G + DV +VG G SGL+AA L + + V E +G +I S
Sbjct: 6 GSAAASSKDVAVVGAGVSGLAAAYAL-----ASKHGVNVLVTEARDRVGGNITS 54
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 36.6 bits (85), Expect = 0.028
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 6/40 (15%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
V+IVGGG GL+AA+ L + + IK+ +LE+ +E+G
Sbjct: 7 VLIVGGGIGGLAAALALAR------QGIKVKLLEQAAEIG 40
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 36.6 bits (85), Expect = 0.029
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78
++D+ IVG GP GL+ A L + + + I + + A + + DPR+I
Sbjct: 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIAL--------IDAREPAASANDPRAI 59
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 36.6 bits (85), Expect = 0.030
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66
+E+DV+IVGGG +G AA+ +K + + + + V+ K + +H
Sbjct: 2 LEHDVVIVGGGLAGCRAALEIK----RLDPSLDVAVVAKTHPIRSH 43
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 36.8 bits (86), Expect = 0.031
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 25 VIIVGGGPSGLSAAIRLKQL 44
V ++GGGP+GLSAA L+++
Sbjct: 140 VAVIGGGPAGLSAAYHLRRM 159
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 36.8 bits (86), Expect = 0.033
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
++ + DV+IVG GP GL+ A L Q +++ VLE+
Sbjct: 5 HPDAHDTDVVIVGAGPVGLTLANLLGQ------YGVRVLVLER 41
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This
model describes thioredoxin-disulfide reductase, a
member of the pyridine nucleotide-disulphide
oxidoreductases (pfam00070) [Energy metabolism,
Electron transport].
Length = 299
Score = 36.1 bits (84), Expect = 0.035
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 24 DVIIVGGGPSGLSAAI 39
DVII+G GP+GL+AAI
Sbjct: 1 DVIIIGAGPAGLTAAI 16
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 36.5 bits (85), Expect = 0.036
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIK 47
YDV+++G GP G AAIR QL +K
Sbjct: 5 YDVVVLGAGPGGYVAAIRAAQLGLK 29
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 36.3 bits (84), Expect = 0.037
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+ IVG G +GL+AA L++ ++ V EKG +G
Sbjct: 3 SIAIVGAGIAGLAAAYALRE------AGREVTVFEKGRGVG 37
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 36.4 bits (85), Expect = 0.038
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+ IVGGG +GL+AA RL K+ E+ V E +LG
Sbjct: 2 IAIVGGGIAGLAAAYRL----AKRGHEVT--VFEADDQLG 35
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 36.3 bits (84), Expect = 0.039
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 23 YDVIIVGGGPSGLSAAI 39
YDV++VGGGP+G +AAI
Sbjct: 212 YDVLVVGGGPAGAAAAI 228
Score = 30.5 bits (69), Expect = 2.4
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65
V ++GGG SG+ AAI L + + +LE EL A
Sbjct: 356 RVAVIGGGNSGVEAAIDLAGIV------EHVTLLEFAPELKA 391
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 36.4 bits (85), Expect = 0.041
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61
+ DV+I+G G +GLS A+RL + ++ VL KG
Sbjct: 8 QCDVLIIGSGAAGLSLALRLAEHR-------RVAVLSKGP 40
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 36.1 bits (84), Expect = 0.046
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61
DV+I+G G +GL+AA+ L ++ VL KG
Sbjct: 9 DVLIIGSGLAGLTAALSLA-------PSFRVTVLTKGP 39
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 35.8 bits (83), Expect = 0.058
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 15 YGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIK 47
+ P +S D+++VGGGP+GL+ A ++ + +
Sbjct: 21 FDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLS 53
>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes
a family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble
periplasmic protein with four heme groups, a
non-covalently bound FAD, and essentially
unidirectional fumarate reductase activity. At least
seven distinct members of this family are found in
Shewanella oneidensis, a species able to use a wide
variety of pathways for respiraton [Energy metabolism,
Electron transport].
Length = 439
Score = 35.8 bits (83), Expect = 0.059
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
DV++VG G +GLSAA+ K+ + +LEK
Sbjct: 1 DVVVVGSGFAGLSAALSAKKAGAA-----NVVLLEK 31
>gnl|CDD|236597 PRK09626, oorD, 2-oxoglutarate-acceptor oxidoreductase subunit
OorD; Reviewed.
Length = 103
Score = 33.5 bits (77), Expect = 0.062
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 505 YCPAGVYEFIIEKNKIQHLQI---NAQNCIHCKTCDIKDP 541
CPAGV I+ + + I + ++CI C+ C++ P
Sbjct: 27 VCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCP 66
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 35.0 bits (81), Expect = 0.064
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 26 IIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68
++VG G +G++ A L L + ++++G++ G H
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDA-----PVIIVDRGAQPGGHWR 38
>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 35.7 bits (83), Expect = 0.066
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
E DV+IVG GP+GL+ A +L +I ++E+
Sbjct: 32 EVDVLIVGCGPAGLTLAAQLSAFP-----DITTRIVER 64
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 35.7 bits (82), Expect = 0.069
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKI 54
++IVGGG +GLSAA L++L EI +
Sbjct: 1 IVIVGGGAAGLSAATTLRRL--LLAAEITL 28
Score = 30.3 bits (68), Expect = 2.8
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFP 83
DV++VG GP GL AA K+ K++ ++E LG +L + + EL
Sbjct: 138 DVVVVGAGPIGLEAAEAAA----KRGKKVT--LIEAADRLGGQLLDPEV--AEELAELLE 189
Query: 84 KEKLNKLFNTPVIE 97
K + L T V+
Sbjct: 190 KYGVELLLGTKVVG 203
>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. This model describes the beta
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason. Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 407
Score = 35.6 bits (82), Expect = 0.071
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKG 60
P YDVIIVGGG GL+ A L K I + VLEKG
Sbjct: 25 PEPKPTYDVIIVGGGGHGLATAYYL-----AKEHGITNVAVLEKG 64
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 403
Score = 35.3 bits (82), Expect = 0.087
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78
DV+I GGG GL+ A+ LKQ A + + V++ S DPR+
Sbjct: 2 CDVVIAGGGYVGLALAVALKQAA----PHLPVTVVDAAPA---GAWSR---DPRAS 47
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This enzyme
oxidizes protoporphyrinogen IX to protoporphyrin IX, a
precursor of heme and chlorophyll. Bacillus subtilis
HemY also has coproporphyrinogen III to coproporphyrin
III oxidase activity in a heterologous expression
system, although the role for this activity in vivo is
unclear. This protein is a flavoprotein and has a
beta-alpha-beta dinucleotide binding motif near the
amino end [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 462
Score = 34.8 bits (80), Expect = 0.11
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----LSGAIID--PRS 77
V+I+GGG SGL AA L++ +++ ++E +G I G +I+ P S
Sbjct: 4 HVVIIGGGISGLCAAYYLEKE--IPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDS 61
Query: 78 IFEL------FPKEK-LNKLFNTPVIEERFLFLSSKKSYKIPSWILPICF 120
E K+ L + + +R++ ++ K +P+ I P
Sbjct: 62 FLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVK 111
>gnl|CDD|181399 PRK08348, PRK08348, NADH-plastoquinone oxidoreductase subunit;
Provisional.
Length = 120
Score = 32.9 bits (75), Expect = 0.12
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 504 RYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTC 536
CPAGV+ ++ E K+ + C+ C C
Sbjct: 52 TVCPAGVFVYLPEIRKV---ALWTGRCVFCGQC 81
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 34.4 bits (79), Expect = 0.15
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
+DV+IVG G SG+ A+++L + + + VL K
Sbjct: 13 FDVVIVGAGGSGMRASLQLARAG------LSVAVLSK 43
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 34.4 bits (80), Expect = 0.15
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 23 YDVIIVGGGPSGLSAAIRL 41
YD I++G G +G A R
Sbjct: 6 YDAIVIGAGQAGPPLAARA 24
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 34.4 bits (80), Expect = 0.16
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 25 VIIVGGGPSGLSAAIRL 41
V ++G GP+GL+AA RL
Sbjct: 143 VAVIGAGPAGLTAAHRL 159
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 34.4 bits (79), Expect = 0.16
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQ 43
+YD++IVG G +G+SAAI K
Sbjct: 61 KYDIVIVGAGGAGMSAAIEAKD 82
>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase,
MSMEG_0569 family. Members of this protein family
belong to a conserved seven-gene biosynthetic cluster
found sparsely in Cyanobacteria, Proteobacteria, and
Actinobacteria. Distant homologies to characterized
proteins suggest that members are enzymes dependent on
a flavinoid cofactor.
Length = 400
Score = 34.2 bits (79), Expect = 0.19
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61
Y V+I+G G +GLS + LKQ I VLEK +
Sbjct: 1 YPVVIIGAGQAGLSVSYYLKQ------AGIDHVVLEKHT 33
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted
to lycopene by desaturation at four (two symmetrical
pairs of) sites. This is achieved by two enzymes (crtP
and crtQ) in cyanobacteria (Gloeobacter being an
exception) and plants, but by a single enzyme in most
other bacteria and in fungi. This single enzyme is
called the bacterial-type phytoene desaturase, or CrtI.
Most members of this family, part of the larger Pfam
family pfam01593, which also contains amino oxidases,
are CrtI itself; it is likely that all members act on
either phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 34.2 bits (79), Expect = 0.19
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 18/70 (25%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----LSG--------AI 72
+++G G GL+ AIRL I + V+E+ + G G I
Sbjct: 1 AVVIGAGFGGLALAIRLAA------AGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVI 54
Query: 73 IDPRSIFELF 82
P ++ ELF
Sbjct: 55 TMPEALEELF 64
>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional.
Length = 488
Score = 34.2 bits (79), Expect = 0.19
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK-------GSE-LGAHILSGAI 72
E+ V+I GGGP+GL A L LA + + ++E+ GS G H + +
Sbjct: 2 TEHAVVIAGGGPTGLMLAGELA-LA-----GVDVAIVERRPNQELVGSRAGGLHARTLEV 55
Query: 73 IDPRSIFELF 82
+D R I + F
Sbjct: 56 LDQRGIADRF 65
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 34.1 bits (79), Expect = 0.21
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
V+I+G GP+GL+AA L + + + VLE +G
Sbjct: 6 SVVIIGAGPAGLTAAYELLK------RGYPVTVLEADPVVG 40
>gnl|CDD|224065 COG1142, HycB, Fe-S-cluster-containing hydrogenase components 2
[Energy production and conversion].
Length = 165
Score = 32.8 bits (75), Expect = 0.23
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 501 PEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTC 536
P A CP G I + +Q++ + CI CK C
Sbjct: 60 PCAEVCPVGA---ITRDD--GAVQVDEEKCIGCKLC 90
>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional.
Length = 502
Score = 33.8 bits (78), Expect = 0.23
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 24 DVIIVGGGPSGLSAAIRL 41
DV+IVG GP+GL+ AI L
Sbjct: 5 DVLIVGAGPTGLTLAIEL 22
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 33.9 bits (78), Expect = 0.24
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+E DV+++G G +GLSAA+ A +K+ V+EK G
Sbjct: 7 YPPDLECDVLVIGSGAAGLSAAV----TAAWHG--LKVIVVEKDPVFG 48
>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 33.8 bits (78), Expect = 0.24
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
++ + D+ I+G G +GL AAI A + N +KI ++ K
Sbjct: 1 QTFQADLAIIGAGGAGLRAAIA----AAEANPNLKIALISK 37
>gnl|CDD|224068 COG1145, NapF, Ferredoxin [Energy production and conversion].
Length = 99
Score = 31.4 bits (70), Expect = 0.25
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 506 CPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549
CP G E I E + + I+ C+ C C P +
Sbjct: 41 CPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAE 84
>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 33.7 bits (78), Expect = 0.26
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIK 47
DVI++GGG +G AA+ ++ K
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAK 24
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 33.6 bits (77), Expect = 0.26
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAII 73
YDV++VG G G+ AA LA + ++ ++EK ++G +SG ++
Sbjct: 6 TYDVVVVGSGGGGMCAA-----LAAADSG-LEPLIVEKQDKVGGSTAMSGGVL 52
>gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 33.8 bits (78), Expect = 0.27
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLA 45
YDV+IVG G +G+ AAI A
Sbjct: 5 RYDVVIVGAGGAGMRAAIEAGPRA 28
>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional.
Length = 413
Score = 33.7 bits (78), Expect = 0.27
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63
V+I GGG GL+ A+ L Q I++ V E EL
Sbjct: 2 KVLIAGGGIGGLTLALTLHQRG------IEVVVFEAAPEL 35
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 33.7 bits (78), Expect = 0.28
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLE 58
DVIIVGGG +G + A+ L +L+ + + ++E
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSHGG---LPVALIE 36
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 33.5 bits (77), Expect = 0.29
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQ--LAIK----KNKEIKICVLEKGSELGAHILSGAI 72
S+ YDV IVGGG GL+ A LK L I + E KG +LS I
Sbjct: 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEA---AAAKGQAYALSLLSARI 71
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 33.5 bits (77), Expect = 0.33
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+ DV+++G G GLSAAI ++L + + VLEK G
Sbjct: 8 LTCDVLVIGSGAGGLSAAITARKLG------LDVVVLEKEPVFG 45
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 33.5 bits (77), Expect = 0.35
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 23 YDVIIVGGGPSGLSAAIRL 41
+DV++VG G +GL AA+ L
Sbjct: 10 FDVLVVGSGAAGLYAALCL 28
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 33.0 bits (76), Expect = 0.37
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 24 DVIIVGGGPSG--LSAAI--RLKQLAIKK---NKEIKICVLEKGSELGAH 66
++IVGGGP+G L+ + RL +L K E+++ ++E G +
Sbjct: 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM 206
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 33.1 bits (76), Expect = 0.38
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 4/35 (11%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
+II+GG +G+SAA + K+L NKE++I V EK
Sbjct: 3 IIIIGGTAAGMSAAAKAKRL----NKELEITVYEK 33
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 32.9 bits (76), Expect = 0.40
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 22 EYDVIIVGGGPSGLSAAI 39
DV+++GGG + L AA+
Sbjct: 4 MVDVLVIGGGNAALCAAL 21
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 33.2 bits (76), Expect = 0.41
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 24 DVIIVGGGPSGLSAA 38
DV++VG GP+GL+AA
Sbjct: 165 DVLVVGAGPAGLAAA 179
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 33.2 bits (76), Expect = 0.42
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIK 47
YD++I+G G + +AAI+ +L
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGAS 25
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 32.8 bits (75), Expect = 0.43
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 24 DVIIVGGGPSGLSAAIRLKQ 43
DVIIVG G +GLSAA LK+
Sbjct: 9 DVIIVGAGLAGLSAAYELKK 28
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 32.9 bits (76), Expect = 0.44
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
EYD II+G G +G A RL + + ++ + +LE G
Sbjct: 5 EYDYIIIGAGSAGCVLANRLSE-----DPDVSVLLLEAG 38
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 32.7 bits (75), Expect = 0.60
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 22 EYDVIIVGGGPSGLSAAI 39
YDV+++G G +GL AAI
Sbjct: 8 SYDVVVIGAGGAGLRAAI 25
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
Length = 400
Score = 32.5 bits (74), Expect = 0.64
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 26 IIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKE 85
+I G G +GLSAA+ L + + ++EK EL + + +G + P ++ L
Sbjct: 6 LIAGAGVAGLSAALELAA------RGWAVTIIEKAQEL-SEVGAGLQLAPNAMRHLERLG 58
Query: 86 KLNKLFNTPVIEERFLFLSSKKSYKI 111
++L T V + L+L + +
Sbjct: 59 VADRLSGTGVTPK-ALYLMDGRKARP 83
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 32.4 bits (74), Expect = 0.65
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 24/76 (31%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDP--------- 75
V I G G +GL+AA +LA + + + E LG + D
Sbjct: 3 VAIAGAGLAGLAAA---YELA---DAGYDVTLYEARDRLGG--KVASWRDSDGNHVEHGL 54
Query: 76 -------RSIFELFPK 84
++ L +
Sbjct: 55 HVFFGCYYNLLTLLKE 70
>gnl|CDD|224066 COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone
oxidoreductase 23 kD subunit (chain I) [Energy
production and conversion].
Length = 172
Score = 31.6 bits (72), Expect = 0.67
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 6/40 (15%)
Query: 503 ARYCPAGVYEFIIEKN------KIQHLQINAQNCIHCKTC 536
A CPA + K + IN CI C C
Sbjct: 64 ANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLC 103
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1.
Length = 738
Score = 32.6 bits (74), Expect = 0.75
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 3 YISSLNHSLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62
YI+ P E E VIIVG G +GL+AA +L K+ VLE +
Sbjct: 141 YINFGVSPSFASPIPEEGTEGSVIIVGAGLAGLAAARQLLSFG------FKVVVLEGRNR 194
Query: 63 LGAHI 67
G +
Sbjct: 195 PGGRV 199
>gnl|CDD|235301 PRK04452, PRK04452, acetyl-CoA decarbonylase/synthase complex
subunit delta; Provisional.
Length = 319
Score = 31.8 bits (73), Expect = 0.78
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 288 PFEEF-QRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDG 333
FE + Y KI ++ GG +T+ GG +LP + F+G
Sbjct: 2 AFEIPKEEYAG--KIREVTLGGTG----PKTVKLGGETALPFYHFEG 42
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 22 EYDVIIVGGGPSGLSAAI 39
EYDV++VG G +G+ AA+
Sbjct: 7 EYDVVVVGSGAAGMVAAL 24
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6.
This model represents the monooxygenase responsible for
the 4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 32.0 bits (73), Expect = 0.82
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEI 52
+DV+IVGGGP GL+ A L + K+ ++
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKV 30
>gnl|CDD|147381 pfam05167, DUF711, Uncharacterized ACR (DUF711). The proteins in
this family are functionally uncharacterized. The
proteins are around 450 amino acids long. It is likely
that this family represents a group of
glycerol-3-phosphate dehydrogenases.
Length = 390
Score = 31.9 bits (73), Expect = 0.83
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 25/92 (27%)
Query: 133 LVRWMGKKAENMGIDIFSGFSAS-------------EILYD---SKNNVCG---IATNNF 173
L + + K A+++G+D GFSA + + D S VC +A+
Sbjct: 72 LAKALDKAAKDVGVDFIGGFSALVHKGFTRGDRALIDSIPDALASTERVCSSVNVASTKA 131
Query: 174 GINKEG------IIKKNFQLGMELYAKYTLFA 199
GIN + +IK+ + A+ +FA
Sbjct: 132 GINMDAVKEMGKLIKRLAEETPLGCARLAVFA 163
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the
B protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the
pyridine nucleotide portion of NAD. This model
identifies proteins that cluster as L-aspartate oxidase
(a flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other
NadB but is just one gene away from NadA [Biosynthesis
of cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 32.1 bits (73), Expect = 0.86
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 22 EYDVIIVGGGPSGLSAAIRL 41
DV+++G G +GLSAA+ L
Sbjct: 2 SCDVVVIGSGAAGLSAALAL 21
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 31.9 bits (73), Expect = 0.91
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 16 GPRESIEYDVIIVGGGPSGLSAAIRL 41
P DV++VG G +GL+AA+
Sbjct: 10 APGWRDAADVVVVGSGVAGLTAALAA 35
>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis.Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 197
Score = 31.4 bits (72), Expect = 0.94
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 341 AGFMNVSRIKGI--HTSIKSGILVADSIF------KKICSNNKFNKLITYKTSFQASWLY 392
A F NV RI + +T + + AD + + + + + + S+L
Sbjct: 28 ARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLT 87
Query: 393 KELYKARN-FKPAMKKGLYIGMLIIGID 419
+ LY R+ P L+ +++ G+D
Sbjct: 88 RVLYNRRSKMNP-----LWNTLVVGGVD 110
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 32.0 bits (73), Expect = 1.0
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67
VI++GGG +G++AA L + K+ +LE +G +
Sbjct: 3 VIVIGGGIAGIAAARAL------HDASFKVTLLESRDRIGGRV 39
>gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit.
Length = 635
Score = 31.8 bits (72), Expect = 1.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIK 47
YD ++VG G +GL AAI L +
Sbjct: 50 TYDAVVVGAGGAGLRAAIGLSEHGFN 75
>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 31.8 bits (73), Expect = 1.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 24 DVIIVGGGPSGLSAAIRL 41
+IVGGG +GL AA++L
Sbjct: 11 RPVIVGGGLAGLMAALKL 28
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 31.6 bits (72), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIK 47
R E+DVI++G G +G+SAA+ +K
Sbjct: 12 RWDAEFDVIVIGAGAAGMSAALFAAIAGLK 41
>gnl|CDD|226017 COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 436
Score = 31.5 bits (72), Expect = 1.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNK 50
D+I +G GP LS A L++ + K+
Sbjct: 6 LDLIGIGIGPFNLSLAALLEEHSGLKSL 33
>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 341
Score = 31.1 bits (71), Expect = 1.3
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 16/60 (26%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLE-------KGSELGAHILSGAIIDPR 76
+++G GP GL+ LK + I + +GA I+ +DP
Sbjct: 164 VALVIGCGPIGLAVIAALKARGVG-----PIVASDFSPERRALALAMGADIV----VDPA 214
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some
sequence reports interpreted as a stop codon). In some
members of this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 31.4 bits (71), Expect = 1.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIK 47
+YD+I++GGG GL+AA K
Sbjct: 2 DYDLIVIGGGSGGLAAAKEAAAYGAK 27
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 31.5 bits (72), Expect = 1.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRL 41
E+DVI++GGG +G A
Sbjct: 9 RMEEFDVIVIGGGITGAGIARDA 31
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 31.4 bits (72), Expect = 1.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
E D IVGGGP+G+ + L LA + + VLEK
Sbjct: 1 MAEVETTDCCIVGGGPAGMMLGL-L--LARAG---VDVTVLEK 37
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 31.4 bits (72), Expect = 1.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 20 SIEYDVIIVGGGPSGLSAAI 39
E DV++VG G +G AAI
Sbjct: 18 DDEADVVVVGFGAAGACAAI 37
>gnl|CDD|183516 PRK12416, PRK12416, protoporphyrinogen oxidase; Provisional.
Length = 463
Score = 31.3 bits (71), Expect = 1.6
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69
V+++GGG +GLS L++L N ++ + ++EK LG I S
Sbjct: 4 VVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 31.1 bits (71), Expect = 1.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE-LGAHI 67
YD+IIVG G GL+ A + + + V+E+ S GA +
Sbjct: 1 YDLIIVGAGILGLAHAYAA------ARRGLSVTVIERSSRAQGASV 40
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 31.2 bits (72), Expect = 1.6
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 22 EYDVIIVGGGPSGLSAA 38
EYDVI+VGGG +G AA
Sbjct: 4 EYDVIVVGGGHAGCEAA 20
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 31.1 bits (71), Expect = 1.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 25 VIIVGGGPSGLSAAIRL 41
VI+VGGG +GL A I+
Sbjct: 6 VIVVGGGLAGLMATIKA 22
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 30.8 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67
VIIVG G SG+SAA L + I+ I +LE +G +
Sbjct: 28 SVIIVGAGMSGISAAKTLSEAGIE-----DILILEATDRIGGRM 66
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 31.1 bits (70), Expect = 1.9
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 9 HSLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIK--------------KNKEIKI 54
++ +K+ P +S + V+IVG G SGL+AA +L + K K+++
Sbjct: 172 QAIKDKF-PAQSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA 230
Query: 55 CVLEKGSELGAHILSGAIIDPRSI 78
+ ++LG +L+G + +P I
Sbjct: 231 NRVGAAADLGGSVLTGTLGNPLGI 254
>gnl|CDD|224069 COG1146, COG1146, Ferredoxin [Energy production and conversion].
Length = 68
Score = 28.2 bits (63), Expect = 1.9
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546
+I I + I G CPAGV++ ++ + + CI C C++ P I+
Sbjct: 1 MEIVIDYDKCIGCGICVEVCPAGVFDLGEDEGGK-PVVARPEECIDCGLCELACPVGAIK 59
Query: 547 WITPEGG 553
G
Sbjct: 60 VDILRPG 66
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 30.9 bits (70), Expect = 2.0
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62
+ + DVI+VG G +GL AA L ++ +L++ E
Sbjct: 2 DGLTADVIVVGAGLAGLVAAAELAD------AGKRVLILDQEGE 39
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 30.8 bits (70), Expect = 2.0
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 332 DGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWL 391
D IG AGF++ S ++GI ++ S ++++ + K+ N T K + L
Sbjct: 264 DNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQPEKLNTAYWRKTRKLRLK---L 320
Query: 392 YKELYKARNF------KPAMKKGL 409
+ ++ K+ K M+ GL
Sbjct: 321 FGKILKSPFMYNPALRKLIMRSGL 344
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 31.0 bits (71), Expect = 2.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 22 EYDVIIVGGGPSGLSAA 38
+ DVI+VG G +GL AA
Sbjct: 4 DADVIVVGAGLAGLVAA 20
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 30.9 bits (70), Expect = 2.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 25 VIIVGGGPSGLSAAI 39
VI+VGGG +G SAAI
Sbjct: 412 VIVVGGGLAGCSAAI 426
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 30.6 bits (69), Expect = 2.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
D IIVGGG +G A+RL++ + +I V+E G +G
Sbjct: 1 DCIIVGGGLAGGLIALRLQR----ARPDFRIRVIEAGRTIG 37
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 30.5 bits (70), Expect = 2.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 25 VIIVGGGPSGLSAAIRL 41
V +VG GP+GL+AA +L
Sbjct: 146 VAVVGSGPAGLAAADQL 162
>gnl|CDD|232824 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of
haloacid dehalogenase superfamily. This subfamily of
sequences falls within the Class-IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase superfamily of
aspartate-nucleophile hydrolases. The use of the name
"Cof" as an identifier here is arbitrary and refers to
the E. coli Cof protein. This subfamily is notable for
the large number of recent paralogs in many species.
Listeria, for instance, has 12, Clostridium, Lactococcus
and Streptococcus pneumoniae have 8 each, Enterococcus
and Salmonella have 7 each, and Bacillus subtilus,
Mycoplasma, Staphylococcus and E. coli have 6 each. This
high degree of gene duplication is limited to the gamma
proteobacteria and low-GC gram positive lineages. The
profusion of genes in this subfamily is not coupled with
a high degree of divergence, so it is impossible to
determine an accurate phylogeny at the equivalog level.
Considering the relationship of this subfamily to the
other known members of the HAD-IIB subfamily
(TIGR01484), sucrose and trehalose phosphatases and
phosphomannomutase, it seems a reasonable hypothesis
that these enzymes act on phosphorylated sugars.
Possibly the diversification of genes in this subfamily
represents the diverse sugars and polysaccharides that
various bacteria find in their biological niches. The
members of this subfamily are restricted almost
exclusively to bacteria (one sequences from S. pombe
scores above trusted, while another is between trusted
and noise). It is notable that no archaea are found in
this group, the closest relations to the archaea found
here being two Deinococcus sequences [Unknown function,
Enzymes of unknown specificity].
Length = 256
Score = 30.3 bits (69), Expect = 2.6
Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 16/124 (12%)
Query: 417 GIDQILFSGKFPFTLHNINSDYTYLEPASKHIPIKYPNPDNKLTFDKLSSIYVSNINHDE 476
G+D IL+ + N +T + + D + D + I + ++ ++
Sbjct: 96 GLDVILYGDDSIYASKNDPEYFTIFKKFLGEPKL--EVVDIQYLPDDILKILLLFLDPED 153
Query: 477 DQPIHLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNK-------IQHLQINAQN 529
+ L ++ +++ GV +K + L I+ ++
Sbjct: 154 LDLLIEALNKLELEENVSVVSSGPYSIEITAKGV-------SKGSALQSLAEALGISLED 206
Query: 530 CIHC 533
I
Sbjct: 207 VIAF 210
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 30.6 bits (70), Expect = 2.7
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 22 EYDVIIVGGGPSGLSAA 38
EYDVI++GGG +G+ AA
Sbjct: 4 EYDVIVIGGGHAGVEAA 20
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 30.3 bits (69), Expect = 2.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQ 43
D+ IVGGG G + A+ L Q
Sbjct: 6 TDIAIVGGGMVGAALALGLAQ 26
>gnl|CDD|178888 PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.
Length = 130
Score = 28.9 bits (66), Expect = 2.9
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 22 EYDVIIV--GGGPSGLSAAIRL 41
++DV + GGG SG + AIR
Sbjct: 60 KFDVYVTVKGGGISGQAGAIRH 81
>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
Length = 765
Score = 30.3 bits (69), Expect = 3.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 25 VIIVGGGPSGLSAAIRLKQL 44
++ +GGGP+GL A+ +K L
Sbjct: 3 IVCIGGGPAGLYFALLMKLL 22
>gnl|CDD|236375 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 598
Score = 30.3 bits (69), Expect = 3.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 22 EYDVIIVGGGPSGLSAAI 39
+YDV++VG G +GL A +
Sbjct: 12 KYDVVVVGAGGAGLRATL 29
>gnl|CDD|216819 pfam01973, MAF_flag10, Protein of unknown function DUF115. This
family of archaebacterial proteins has no known
function.
Length = 170
Score = 29.5 bits (67), Expect = 3.3
Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 37/168 (22%)
Query: 2 NYISSLNHSLINKYGPRESIEYDVIIVGGGPSGLSAAI-RLKQLAIKKNKEIKICVLEKG 60
+ L+NK + IIVG GPS L + LK+ ++K + I
Sbjct: 9 ENLKDPLKELLNKKKGK-----PAIIVGAGPS-LDKHLPLLKKN---RDKAVIIAA---D 56
Query: 61 SELGA--------HILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIP 112
S L A I+ +D + I F KE K + P++ + + ++
Sbjct: 57 SALKALLKHGIKPDIV--VSLDRQEISYEFFKE-AFKEGDIPLV------HAHGVNPELL 107
Query: 113 SWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYD 160
K G I + + E++G +F GFS + D
Sbjct: 108 E-------KYKGPKIFFVGGTTQAFPWFLEDLGGILFGGFSVANRAVD 148
>gnl|CDD|240286 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 30.1 bits (68), Expect = 3.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIK 47
YD ++VG G +GL AA+ L +L K
Sbjct: 29 TYDAVVVGAGGAGLRAALGLVELGYK 54
>gnl|CDD|180442 PRK06175, PRK06175, L-aspartate oxidase; Provisional.
Length = 433
Score = 30.0 bits (68), Expect = 3.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61
+ DV+IVG G +GL +A+ L K++KI ++ KG
Sbjct: 3 LYADVLIVGSGVAGLYSALNL-------RKDLKILMVSKGK 36
>gnl|CDD|226287 COG3764, SrtA, Sortase (surface protein transpeptidase) [Cell
envelope biogenesis, outer membrane].
Length = 210
Score = 29.7 bits (67), Expect = 3.5
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 405 MKKGLYIGMLIIGIDQILFSGKFPFTLHNINSDYTYLEPASKHIPIKYPNPDNKLTFDKL 464
M+K L + +LI G+ +LF G L S+ + K D + +
Sbjct: 1 MRKILIVLILIAGL-ILLFVGGISNLLTAKYSELYKKAQRGRAQLKKENALDASSNEEVV 59
Query: 465 SSIYVSNINHDEDQPIHLILKNKKIP-IHINFSIYAG 500
S VS + D+ + L +IP I + IY G
Sbjct: 60 SP--VSFYSPDKG-EVIGYL---EIPSIEVKLPIYEG 90
>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 566
Score = 30.2 bits (68), Expect = 3.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 19 ESIEYDVIIVGGGPSGLSAA 38
E IEYD +++GGG +GL +A
Sbjct: 2 EKIEYDAVVIGGGLAGLMSA 21
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 30.2 bits (68), Expect = 3.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 420 QILFSGKFPFTLHNINSDYTYLEPASKHIPIK 451
++LF GK P T H+I S Y EP + +P++
Sbjct: 342 KVLFGGK-PLTNHSIPSIYGAYEPTAVFVPLE 372
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 30.2 bits (69), Expect = 3.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRL 41
P D I+GGG +G + A+ L
Sbjct: 255 PGSPKARDAAIIGGGIAGAALALAL 279
>gnl|CDD|201193 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16. This family
includes small ribosomal subunit S9 from prokaryotes
and S16 from eukaryotes.
Length = 121
Score = 28.5 bits (65), Expect = 3.9
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 22 EYDVIIV--GGGPSGLSAAIRL 41
++D+++ GGG SG + AIRL
Sbjct: 51 KFDIVVTVKGGGISGQAGAIRL 72
>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 29.7 bits (67), Expect = 4.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
S YDV+IVGGG +G + L + K KI ++E+ S+
Sbjct: 41 LGSDVYDVVIVGGGVTGTALFYTLSKFTNLK----KIALIERRSDFA 83
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 30.2 bits (68), Expect = 4.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+I+VG GP+GL+AA L++ + + VLE S +G
Sbjct: 696 IIVVGAGPAGLTAARHLQR------QGFSVTVLEARSRIG 729
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 28.3 bits (64), Expect = 4.4
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 25 VIIVGGGPSGLSAAIRLKQ-----LAIKKNKEIKICVLEKGSELGAHILSGAIIDP 75
+II+G G G S A L++ + I K+ E +E+ E G ++ G D
Sbjct: 1 IIIIGYGRVGRSLAEELREGGPDVVVIDKDPE----RVEELREEGVPVVVGDATDE 52
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate
reductase, flavoprotein subunit, Bacillus subtilis
subgroup. This model represents the succinate
dehydrogenase flavoprotein subunit as found in the
low-GC Gram-positive bacteria and a few other lineages.
This enzyme may act in a complete or partial TCA cycle,
or act in the opposite direction as fumarate reductase.
In some but not all species, succinate dehydrogenase
and fumarate reductase may be encoded as separate
isozymes [Energy metabolism, TCA cycle].
Length = 603
Score = 29.8 bits (67), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 25 VIIVGGGPSGLSAAIRLKQL 44
VI+VG G +G AA +L +L
Sbjct: 1 VIVVGTGLAGGMAAAKLAEL 20
>gnl|CDD|219690 pfam07996, T4SS, Type IV secretion system proteins. Members of
this family are components of the type IV secretion
system. They mediate intracellular transfer of
macromolecules via a mechanism ancestrally related to
that of bacterial conjugation machineries.
Length = 195
Score = 28.8 bits (65), Expect = 4.9
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 350 KGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFK 402
+ ++ + G S K + S K +Y + +AS + KA K
Sbjct: 69 QSVYDLVLDGYGGLSSSAKSLYSKEKLFDTCSYPSGSRASICQRSADKAAQDK 121
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 29.2 bits (65), Expect = 5.2
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLE-------KGSELGAHILSG 70
+ D+++ G G G + + + +KNK+IK+CV+E G + G H++ G
Sbjct: 174 KVDILVAGVGTGGTATGV--GKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQG 227
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 29.2 bits (66), Expect = 6.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRL 41
P V ++G GP+GL+AA L
Sbjct: 118 PGSRTGKKVAVIGAGPAGLAAADDL 142
>gnl|CDD|217536 pfam03403, PAF-AH_p_II, Platelet-activating factor acetylhydrolase,
isoform II. Platelet-activating factor acetylhydrolase
(PAF-AH) is a subfamily of phospholipases A2,
responsible for inactivation of platelet-activating
factor through cleavage of an acetyl group. Three known
PAF-AHs are the brain heterotrimeric PAF-AH Ib, whose
catalytic beta and gamma subunits are aligned in
pfam02266, the extracellular, plasma PAF-AH (pPAF-AH),
and the intracellular PAF-AH isoform II (PAF-AH II).
This family aligns pPAF-AH and PAF-AH II, whose
similarity was previously noted.
Length = 372
Score = 29.3 bits (66), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 368 KKICSNNKFNKLITYKTSFQAS 389
KKI S +K K+IT K S +
Sbjct: 288 KKIYSPDKERKMITIKGSVHQN 309
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 29.0 bits (65), Expect = 7.1
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 20 SIEYDVIIVGGGPSGLSAA 38
+ YD++++GGG G++AA
Sbjct: 3 TFMYDLVVIGGGSGGMAAA 21
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 29.1 bits (66), Expect = 8.0
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 63 LGA-HILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFK 121
+GA +L G +DP S+ +L +EK+ P I +L + L +
Sbjct: 229 VGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTI-----WLGLLNYLEANGKDLSSLRR 283
Query: 122 NHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASE 156
++ S L R + +K E G+++ + +E
Sbjct: 284 ----VVVGGSALPRSLIEKLEERGVEVIHAWGMTE 314
>gnl|CDD|133455 cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain of glutamate
dehydrogenase, subgroup 2. Amino acid dehydrogenase
(DH) is a widely distributed family of enzymes that
catalyzes the oxidative deamination of an amino acid to
its keto acid and ammonia with concomitant reduction of
NADP+. Glutamate DH is a multidomain enzyme that
catalyzes the reaction from glutamate to
2-oxyoglutarate and ammonia in the presence of NAD or
NADP. It is present in all organisms. Enzymes involved
in ammonia asimilation are typically NADP+-dependent,
while those involved in glutamate catabolism are
generally NAD+-dependent. Amino acid DH-like
NAD(P)-binding domains are members of the Rossmann fold
superfamily and include glutamate, leucine, and
phenylalanine DHs, methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha -beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 254
Score = 28.4 bits (64), Expect = 8.8
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Query: 56 VLEKGSELGAHILS-----GAIIDPRSIFELFPKEKLNKL 90
EK ELGA +++ G + DP + F EKL +L
Sbjct: 53 AAEKLLELGAKVVTLSDSKGYVYDP----DGFTGEKLAEL 88
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 28.5 bits (64), Expect = 9.3
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG---SELGAHILSGAIIDPRSIFEL 81
+ I+G G GL+AA L+ ++ E+K V EK E+GA G I I +L
Sbjct: 3 IAIIGAGIGGLTAAALLQ----EQGHEVK--VFEKNESVKEVGA----GIGIGDNVIKKL 52
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 28.6 bits (64), Expect = 9.8
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
YD I+VGGG +G A L Q + +LE+G
Sbjct: 56 YDYIVVGGGTAGCPLAATLSQ-------NFSVLLLERG 86
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 28.8 bits (65), Expect = 9.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 25 VIIVGGGPSGLSAA 38
V ++G GP+GL+AA
Sbjct: 542 VAVIGAGPAGLAAA 555
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.424
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,428,777
Number of extensions: 2968036
Number of successful extensions: 2920
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2898
Number of HSP's successfully gapped: 217
Length of query: 561
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 459
Effective length of database: 6,413,494
Effective search space: 2943793746
Effective search space used: 2943793746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)