RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14496
(561 letters)
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 810 bits (2095), Expect = 0.0
Identities = 283/556 (50%), Positives = 385/556 (69%), Gaps = 12/556 (2%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPR 76
R + E DV+IVG GP+GLSAA RLKQLA + K++++C++EK + +GAH LSGA +DPR
Sbjct: 30 ERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPR 89
Query: 77 SIFELFPKEK-LNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVR 135
+ ELFP K NTPV E+RF L+ K +P + + NHGNY++ L LV
Sbjct: 90 AFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVP-ILPGLPMNNHGNYVVRLGHLVS 148
Query: 136 WMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKY 195
WMG++AE +G++++ G++A+EIL+ +V GIATN+ GI K+G K F+ G+EL+AK
Sbjct: 149 WMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKV 208
Query: 196 TLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDY 255
T+FAEG GHL+KQ+ KKF+L +PQTY +G+KELW I+ K K G V HT+GWPLD
Sbjct: 209 TIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKKWKPGRVDHTVGWPLDR 268
Query: 256 KTYGGGFLYHMENNQ--ISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISY 313
TYGG FLYH+ + +++G+++ LDY+NPYLSPF EFQR+K HP I L+GGKRI+Y
Sbjct: 269 HTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLSPFREFQRWKHHPSIKPTLEGGKRIAY 328
Query: 314 GARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSN 373
GAR + GG QS+P+ F GG IGC+ GFMNV +IKG HT++KSG L A+SIF ++ S
Sbjct: 329 GARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSE 388
Query: 374 NKFNK-----LITYKTSFQASWLYKELYKARNFKPAMKK--GLYIGMLIIGIDQILFSGK 426
N +K + Y+ + + SW++KELY RN +P+ G+Y GM+ GI +F G
Sbjct: 389 NLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGILGVYGGMIYTGIFYWIFRGM 448
Query: 427 FPFTLHNINSDYTYLEPASKHIPIKYPNPDNKLTFDKLSSIYVSNINHDEDQPIHLILKN 486
P+TL + SD L+PA PI+YP PD +++FD LSS+ +S NH+ DQP HL LK+
Sbjct: 449 EPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLKD 508
Query: 487 KKIPIHINFSIYAGPEARYCPAGVYEFI-IEKNKIQHLQINAQNCIHCKTCDIKDPTQNI 545
+P++ N SIY GPE R+CPAGVYEF+ +E+ LQINAQNC+HCKTCDIKDP+QNI
Sbjct: 509 DSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNI 568
Query: 546 EWITPEGGSGTNYPNM 561
W+ PEGG G Y M
Sbjct: 569 NWVVPEGGGGPAYNGM 584
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 155 bits (393), Expect = 7e-43
Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 29/269 (10%)
Query: 11 LINKYGPR--ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68
+ +Y E D++IVG G GLSAA L L +++I ++E G G
Sbjct: 66 MTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTL----RPDLRITIVEAGVAPGGGAW 121
Query: 69 SGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYII 128
G + + L+++ P E+ ++ K + S +L + +
Sbjct: 122 LGGQLFSAMVMRKPADVFLDEV-GVP-YEDEGDYVVVKHAALFTSTVLSKVLQRPNVKLF 179
Query: 129 SLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLG 188
+ + + + +K A ++K + G+ TN ++ +
Sbjct: 180 NATTVEDLITRKHHAESSSSSDDGEA---EDEAKVRIAGVVTNWTLVSMHHDDQSAMD-P 235
Query: 189 MELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLH-------- 240
+ A + G G +K+ L + K + + G++ L + +
Sbjct: 236 NTINAPVIISTTGHDGPFGAFSVKR--LVSMKQMERLN-GMRGLDMQSAEDAIVNNTREI 292
Query: 241 KKGLVIH------TIGWPLDYKTYGGGFL 263
GL++ G T+G L
Sbjct: 293 VPGLIVGGMELSEIDGANRMGPTFGAMAL 321
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 152 bits (386), Expect = 7e-41
Identities = 62/386 (16%), Positives = 132/386 (34%), Gaps = 43/386 (11%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS--ELGAHILSGAIIDPRSIF 79
+YDV+I+GGG +G SAA +L ++ +KI +++ +G A+
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLS----RRG--LKILLVDSKPWNRIGDKPCGDAVS-KAHFD 58
Query: 80 ELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGK 139
+L + + + P G + ++ + + K
Sbjct: 59 KLGMPYPKGEELENKINGIKLYS---------PDMQTVWTVNGEG-FELNAPLYNQRVLK 108
Query: 140 KAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFA 199
+A++ G++I+ +A + +++ V G N N+E +Y+K + A
Sbjct: 109 EAQDRGVEIWDLTTAMKPIFED-GYVKGAVLFNRRTNEEL----------TVYSKVVVEA 157
Query: 200 EGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYG 259
G ++ + + D + + +E+ + + I Y
Sbjct: 158 TGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETSPGGYW 217
Query: 260 GGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTIT 319
F N++++G I P + + +++Y K + K + G +
Sbjct: 218 WYF--PKGKNKVNVGLGIQGGMGYPSIHEY--YKKY--LDKYAPDVDKSKLLVKGGALVP 271
Query: 320 TGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK- 378
T L ++G IG + +N G +++ SG A +I F+
Sbjct: 272 TRRP--LYTMAWNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAF-ETGDFSAS 328
Query: 379 -LITYKTSFQASWL--YKELYKARNF 401
L + + L R F
Sbjct: 329 GLWDMNICYVNEYGAKQASLDIFRRF 354
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 106 bits (267), Expect = 3e-25
Identities = 66/400 (16%), Positives = 131/400 (32%), Gaps = 49/400 (12%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL 81
YDV++VGGGP G +AA + +K ++EK E+G+ + G + +
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAK------YGLKTLMIEKRPEIGSPVRCGEGLSKGIL-NE 56
Query: 82 FPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKA 141
+ V R S K+ + S G Y++ + + A
Sbjct: 57 ADIKADRSFIANEVKGARIYGPSEKRPIILQS---EKAGNEVG-YVLERDKFDKHLAALA 112
Query: 142 ENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEG 201
G D++ A ++ ++ V G + ++ AK + A+G
Sbjct: 113 AKAGADVWVKSPALGVIKEN-GKVAGAKIRHNNEIV------------DVRAKMVIAADG 159
Query: 202 SRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYGGG 261
+ L + + + + IN + + G
Sbjct: 160 FESEFGRWA----GLKSVILARNDIISALQYRMINVDVDPDYTDFYLGSIAPA----GYI 211
Query: 262 FLYHMENNQISIGYIISLDYKNPYLSPFEEFQRY-KTHPKICKILKGGKRISYGARTITT 320
+++ ++G S+++ + R+ + HP LK G+ I ++
Sbjct: 212 WVFPKGEGMANVGIGSSINWIHNRFELKNYLDRFIENHPG----LKKGQDIQLVTGGVSV 267
Query: 321 GGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLI 380
+ G +G A ++ GI +I SG+ A + I SN+
Sbjct: 268 SKV--KMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESND------ 319
Query: 381 TYKTSFQASWLYKELYKARNFKPAMKKGLYIGMLIIGIDQ 420
S Q Y++L K R F+ + + +
Sbjct: 320 ---YSPQMMQKYEKLIKER-FERKHLRNWVAKEKLAMLSD 355
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 93.2 bits (231), Expect = 3e-21
Identities = 44/262 (16%), Positives = 84/262 (32%), Gaps = 53/262 (20%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78
E DV++VG G +GLSAA + KN +++ ++E+ G G + I
Sbjct: 36 TYAETDVVVVGAGSAGLSAAYEI-----SKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMI 90
Query: 79 FELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSD---LVR 135
V + LFL + + Y++
Sbjct: 91 ----------------VRKPAHLFL---DEIGVA-------YDEQDTYVVVKHAALFTST 124
Query: 136 WMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKY 195
M K + +F+ +A +++ N V G+ TN + + + + AK
Sbjct: 125 IMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMD-PNVMEAKI 182
Query: 196 TLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTI--------NPKLHKKGLVI- 246
+ + G G +K+ + G+K L + G+++
Sbjct: 183 VVSSCGHDGPFGATGVKRL---KSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVT 239
Query: 247 -----HTIGWPLDYKTYGGGFL 263
G P T+G +
Sbjct: 240 GMEVAEIDGAPRMGPTFGAMMI 261
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 89.9 bits (222), Expect = 8e-20
Identities = 45/284 (15%), Positives = 81/284 (28%), Gaps = 71/284 (25%)
Query: 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77
+ DVIIVG G SGLSAA + K ++K+C++E G G +
Sbjct: 61 DKFAVSDVIIVGAGSSGLSAAYVIA----KNRPDLKVCIIESSVAPGGGSWLGGQLFSAM 116
Query: 78 IFELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSD---LV 134
+ L +L I +++ G+Y++ +
Sbjct: 117 VMRKPAHLFLQELE--------------------------IPYEDEGDYVVVKHAALFIS 150
Query: 135 RWMGKKAENMGIDIFSGFSASEILYDSKNN-----VCGIATNNFGINKEG---------- 179
+ K + + +F+ +++ V G+ TN + +
Sbjct: 151 TVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNV 210
Query: 180 ----IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELW-- 233
K + + L G G K+ D G+K L
Sbjct: 211 IELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRI---VDIDQNQKLGGMKGLDMN 267
Query: 234 -------------TINPKLHKKGL-VIHTIGWPLDYKTYGGGFL 263
++ G+ V G T+G L
Sbjct: 268 HAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMAL 311
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 88.7 bits (220), Expect = 5e-19
Identities = 53/359 (14%), Positives = 110/359 (30%), Gaps = 55/359 (15%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL 81
+ DV+++G GP+G AA + + K+ ++EK I G + PR + L
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNK------SGFKVKIVEKQKFPRFVI--GESLLPRCMEHL 56
Query: 82 FPKEKLN---KLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMG 138
++ + ++ K ++ + + + + + +
Sbjct: 57 ---DEAGFLDAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLA 113
Query: 139 KKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLF 198
+A G+D+ ++I + + + G E+ A++ +
Sbjct: 114 DEAARQGVDVEYEVGVTDIKFFG-TDSVTTIEDINGN------------KREIEARFIID 160
Query: 199 AEGSRGHLSKQIIKKFNLDNKKDP------QTYSLGIKELWTINPKLHKKGLVIHTIGWP 252
A G + + F LD T+ +K +G I +
Sbjct: 161 ASGYGRVIP----RMFGLDKPSGFESRRTLFTHIKDVKR----PVAAEMEGNRITAVVHK 212
Query: 253 LDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEF--QRYKTHPKICKILKGGKR 310
+ N S+G++ Y + Y EE I + K +
Sbjct: 213 PKV--WIWVI--PFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAERFKSEEF 268
Query: 311 ISYGARTITTGGLQ-SLPEFIFDGGAFIGCNAGFMN--VSRIKGIHTSIKSGILVADSI 366
+ T G S + DG G F++ S G +++SG
Sbjct: 269 L---FEPRTIEGYAISASKLYGDGFVLTGNATEFLDPIFSS--GATFAMESGSKGGKLA 322
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 83.4 bits (206), Expect = 3e-17
Identities = 56/361 (15%), Positives = 127/361 (35%), Gaps = 53/361 (14%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL 81
+D+I++GGGP G + A + + ++ +LE+ + I +++ P ++ +
Sbjct: 7 VFDLIVIGGGPGGSTLASFVAM------RGHRVLLLEREAFPRHQI-GESLL-PATVHGI 58
Query: 82 FPK----EKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWM 137
+++ + F + + + P Y + + +
Sbjct: 59 CAMLGLTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFA-YQVERARFDDML 117
Query: 138 GKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTL 197
+ +E G+D+ ++L++ G+ N EG+ + +A++ +
Sbjct: 118 LRNSERKGVDVRERHEVIDVLFE-GERAVGVRYR----NTEGVE-------LMAHARFIV 165
Query: 198 FAEGSRGHLSKQIIKKFNLDNKK-DPQTYSLGIKELWT--INPKLHKKGLVIHT-IGWPL 253
A G+R +S+ + + ++ + + N K +
Sbjct: 166 DASGNRTRVSQA------VGERVYSRFFQNVAL---YGYFENGKRLPAPRQGNILSAAFQ 216
Query: 254 DYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQR--YKTHPKICKILKGGKRI 311
D + + S+G ++S + E P I + L R+
Sbjct: 217 DG--WFWYIPLS--DTLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAPATRV 272
Query: 312 S---YGARTITTGGLQSLPEFIFDGGAFIGCNA-GFMN--VSRIKGIHTSIKSGILVADS 365
+ YG I F +G A +G +A F++ S G+H + S +LVA +
Sbjct: 273 TTGDYGEIRIRKDYSYCNTSFWKNGMALVG-DAACFVDPVFSS--GVHLATYSALLVARA 329
Query: 366 I 366
I
Sbjct: 330 I 330
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 75.1 bits (183), Expect = 1e-14
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG---SELGAHILSGAII 73
+D++++G G G + A L+QL + ++E+G +E GA IL+ +
Sbjct: 31 HFTEEAFDIVVIGAGRMGAACAFYLRQL----APGRSLLLVEEGGLPNEEGATILAPGVW 86
Query: 74 DPRSI 78
+ I
Sbjct: 87 TAQDI 91
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 71.9 bits (176), Expect = 2e-13
Identities = 49/364 (13%), Positives = 105/364 (28%), Gaps = 63/364 (17%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL 81
V I+GGGP+G A + L + + + E+ + + G + P ++ L
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHK------LGHDVTIYERSAFPRYRV--GESLLPGTMSIL 74
Query: 82 --------------FPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYI 127
K L+ F F + K + +
Sbjct: 75 NRLGLQEKIDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHA----------VQ 124
Query: 128 ISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQL 187
+ + + + +A + GI + +++ + V
Sbjct: 125 VKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGE------------- 171
Query: 188 GMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIH 247
+ + + + + A GS G +S +K + + D + + + +
Sbjct: 172 SVTVESDFVIDAGGSGGPIS----RKLGVR-QYDEFYRNFAVWSYFKLKDPFEGDLKGTT 226
Query: 248 TIGWPLDYKTYGGGFLYHMENNQISIGYIISLD-YKNPYLSPFEEFQRY--KTHPKICKI 304
D + ++ S+G ++ + F K I
Sbjct: 227 YSITFEDG--WVWMIPIK--DDLYSVGLVVDRSKSAEVREQGADAFYSSTLAKCAKAMDI 282
Query: 305 LKGGKRISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMN--VSRIKGIHTSIKSGILV 362
L G ++ I F D G A F + S+ G+H + +S +
Sbjct: 283 LGGAEQ--VDEVRIVQDWSYDTEVFSADRFFLCGDAACFTDPLFSQ--GVHLASQSAVSA 338
Query: 363 ADSI 366
A +I
Sbjct: 339 AAAI 342
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 61.5 bits (149), Expect = 3e-10
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS----GAIID--P 75
+ V+I+GGG +GL+AA +++ +KN +++ ++E +G I + G II+ P
Sbjct: 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGP 64
Query: 76 RSIF 79
S
Sbjct: 65 DSFL 68
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 56.2 bits (135), Expect = 2e-08
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS----GAIID--PR 76
++IVGGG +GL+AA + + ++ I +LE G LG + + G I+ P
Sbjct: 5 KRLVIVGGGITGLAAAYYAE----RAFPDLNITLLEAGERLGGKVATYREDGFTIERGPD 60
Query: 77 SIF 79
S
Sbjct: 61 SYV 63
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 56.2 bits (135), Expect = 2e-08
Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 12/144 (8%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPR 76
++ +D+I VG GPS ++ AI L++ A +++ L+K + H ++
Sbjct: 25 TATAVVHDLIGVGFGPSNIALAIALQERAQ-AQGALEVLFLDKQGDYRWH--GNTLVSQS 81
Query: 77 SIFELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRW 136
+ F K+ ++ P + F++ + F N G + + +
Sbjct: 82 ELQISFLKDLVS--LRNP--TSPYSFVNYLHKHDRLVD-----FINLGTFYPCRMEFNDY 132
Query: 137 MGKKAENMGIDIFSGFSASEILYD 160
+ A + G I
Sbjct: 133 LRWVASHFQEQSRYGEEVLRIEPM 156
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 55.9 bits (134), Expect = 2e-08
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-----GAIID--PR 76
V+++GGG SGL+A+ L + K+ ++E LG I S GAI + PR
Sbjct: 4 TVVVLGGGISGLAASYHLS----RAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPR 59
Query: 77 SIF 79
I
Sbjct: 60 GIR 62
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 55.3 bits (134), Expect = 2e-08
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAI-IDPRSIFE 80
DV+I G G G A L + ++ V+E+ A +GA + P I
Sbjct: 6 HIDVLINGCGIGGAMLAYLLGRQ------GHRVVVVEQARRERAI--NGADLLKPAGI-R 56
Query: 81 LF 82
+
Sbjct: 57 VV 58
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 55.3 bits (133), Expect = 3e-08
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS----GAIID 74
S + + I+G GP+GL+A + L+Q +LE+ +G S G +
Sbjct: 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFH-----DYTILERTDHVGGKCHSPNYHGRRYE 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 3e-08
Identities = 94/603 (15%), Positives = 179/603 (29%), Gaps = 171/603 (28%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAI----IDPRS 77
E D II +S +RL + K +E+ +E+ + L I P
Sbjct: 50 EIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 78 IFELFPKEKLNKLFNTPVIEERF--LFLSSKKSY-KIPSWILPICFKNHGNYIISLSDLV 134
+ ++ E+ ++L+N + F +S + Y K+ +L + ++ +
Sbjct: 108 MTRMY-IEQRDRLYNDN---QVFAKYNVSRLQPYLKLRQALLEL---RPAKNVL-----I 155
Query: 135 RWMGKKAENMGIDIFSGFS--ASEILYDSK---NNVCGIATNNFG-INKEG--------- 179
+ G SG + A ++ K I N N
Sbjct: 156 DGVL------G----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 180 --IIKKNFQLGMELYAKYTLFAEGSRGHLSKQII-KKFN-----LDNKKDPQT---YSLG 228
I N+ + + L + L + + K + L N ++ + ++L
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 229 IKELWTI-NPKLHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLS 287
K L T ++ T LD+ + L E + + Y LD + L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKY---LDCRPQDLP 319
Query: 288 PFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVS 347
+ T+P+ I+ + I G T + +V+
Sbjct: 320 R----EVLTTNPRRLSII--AESIRDGLATWDN----------------------WKHVN 351
Query: 348 RIKGIHTSIKSGILVAD-----------SIFKKICSNNKFNKLITYKTSFQASWLYKELY 396
K + T I+S + V + S+F + I W
Sbjct: 352 CDK-LTTIIESSLNVLEPAEYRKMFDRLSVFPP-------SAHIPTIL-LSLIWFDVIKS 402
Query: 397 KARNF-KPAMKKGLYIG---MLIIGIDQILFSGKFP----FTLHN--INSDYTYLEPASK 446
K L I I I K + LH ++ Y
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH---Y------ 453
Query: 447 HIPIKYPNPDNKLTFDKLSSIYVSNINHDEDQPIHL--ILKNKKIP----IHINFS---- 496
+IP + + + L L + S+I H HL I +++ + ++F
Sbjct: 454 NIPKTFDS--DDLIPPYLDQYFYSHIGH------HLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 497 --IYAGPEARYCPAGV---------YE-FIIEKNKIQHLQINA---------QNCIHCKT 535
+ A + Y+ +I + + +NA +N I K
Sbjct: 506 KIRHDST-AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 536 CDI 538
D+
Sbjct: 565 TDL 567
Score = 34.1 bits (77), Expect = 0.14
Identities = 34/225 (15%), Positives = 59/225 (26%), Gaps = 92/225 (40%)
Query: 17 PRESIEYDVIIVGGGP---SGLSAAIR--------LKQLAIKK-NKEIKICV--LEKGSE 62
PRE ++ P S ++ +IR K + K I+ + LE +E
Sbjct: 319 PRE-------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-AE 370
Query: 63 LGAHILSGAIID-----PRSIFELF--------PKEKLNKLFNTPVIEERF--------- 100
++ P + L +NKL ++E++
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 101 LFLSSKK--------------SYKIPSWILPICFKNHG-------NYIIS-----LS--- 131
++L K Y IP F + Y S L
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPK-----TFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 132 -------------DLVRWMGKKAENMGIDIFSGFSASEILYDSKN 163
D R++ +K + + S L K
Sbjct: 486 HPERMTLFRMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKF 529
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 55.5 bits (133), Expect = 3e-08
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 19/110 (17%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS----GAI 72
+ S V ++G G SGL+AA +LK + + V E + G + S G I
Sbjct: 8 DKHSSAKRVAVIGAGVSGLAAAYKLKI------HGLNVTVFEAEGKAGGKLRSVSQDGLI 61
Query: 73 ID--PRSIF-------ELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIPS 113
D ++ L L + P+ + + + +PS
Sbjct: 62 WDEGANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPS 111
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 55.0 bits (132), Expect = 5e-08
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAI-IDPRSIFE 80
DV+IVG GP+GL AA L + +K ++K+ +++K S + A + R++ E
Sbjct: 8 YCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRSTKVYN--GQADGLQCRTL-E 63
Query: 81 LF 82
Sbjct: 64 SL 65
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 54.5 bits (132), Expect = 5e-08
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 13 NKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SG 70
N Y ++ YDVI++GGGPSGL AAI A ++ + +L+KG++LG + SG
Sbjct: 17 NLYFQSNAMHYDVIVIGGGPSGLMAAIG----AAEEGA--NVLLLDKGNKLGRKLAISG 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 5e-08
Identities = 116/651 (17%), Positives = 191/651 (29%), Gaps = 236/651 (36%)
Query: 1 MNYISSLNHSLINKYGPRESIEYDVIIVGGGPSGL-SAAIRLKQ--LAIKKNKEIKICVL 57
M+ S+ L +G S+E+ +++ P+ A +L++ I
Sbjct: 1 MDAYST--RPLTLSHG---SLEHVLLV----PTASFFIASQLQEQFNKILPEPTEGFAAD 51
Query: 58 EKGS---ELGAHILS--GAIIDPRSIFELFPKEKLNKLFNTPVIEERFL-------FLSS 105
++ + EL L ++++P + + + LN E +L +
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQF--DQVLNLCLTE--FENCYLEGNDIHALAAK 107
Query: 106 ------KKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSG-FSASEIL 158
K I NYI + R KK+ S F A
Sbjct: 108 LLQENDTTLVKTKELIK--------NYITARIMAKRPFDKKSN-------SALFRAVG-- 150
Query: 159 YDSKNNVCGIATNNFGINKEGIIKKNFQ-LGMELYAKYTLFAEG----SRGHLSKQIIKK 213
+ + I FG +G F+ L +LY Y + S LS ++I+
Sbjct: 151 -EGNAQLVAI----FG--GQGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAETLS-ELIR- 200
Query: 214 FNLDNKKDPQTYSLGIK-ELWTINP-KLHKKG-LVIHTIGWPLDYKTYGGGFLYHMENNQ 270
+ ++ G+ W NP K L+ I PL
Sbjct: 201 ---TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL----------------- 240
Query: 271 ISIG------YIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYG---ARTITTG 321
IG Y+++ K +P E + LKG S G A I
Sbjct: 241 --IGVIQLAHYVVTA--KLLGFTPGE----------LRSYLKGATGHSQGLVTAVAIAET 286
Query: 322 GLQSLPEFI----------FDGGAFIGCNA--GFMNVS-RIKGIHTSIKSGI-------- 360
S F F FIG + N S + S+++
Sbjct: 287 D--SWESFFVSVRKAITVLF----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 361 ---LVADSIFKKICSNNKFNKLITYKTSFQASWLYKELY-KARNF----KPAMKKGLYIG 412
L + + + NK N + L A+N P + LY G
Sbjct: 341 ISNLTQEQVQDYV---NKTNS-----HLPAGKQVEISLVNGAKNLVVSGPP---QSLY-G 388
Query: 413 MLI--------IGIDQ--ILFSGK-------F-----PFTLHNINSDYTYLEPASKHIPI 450
+ + G+DQ I FS + F PF H S L PAS I
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF--H---SHL--LVPASDLI-- 439
Query: 451 KYPNPDNKLTFDKLSSIYVSNINHDED-QPIHLILKNK--KIPIHINFSIYAGPEARYCP 507
++D ++ K +IP+ + + G + R
Sbjct: 440 ------------------------NKDLVKNNVSFNAKDIQIPV---YDTFDGSDLRVLS 472
Query: 508 AGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT---PEGGSG 555
+ E I++ I + + +T T I P G SG
Sbjct: 473 GSISERIVD-------CI-IRLPVKWETTTQFKAT----HILDFGPGGASG 511
Score = 44.7 bits (105), Expect = 9e-05
Identities = 47/274 (17%), Positives = 87/274 (31%), Gaps = 86/274 (31%)
Query: 11 LINKYGPRESIEYDVI--------IVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62
+ YG SI D++ I GG G + + + K+ + E
Sbjct: 1653 FKDTYG--FSIL-DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 63 LGAHILSGAIIDPRSIFELFPKEKLNKLFNT-PVIEERFLFLSSKKSYK-IPSW-ILPI- 118
+ H S F K L+ T P + L K +++ + S ++P
Sbjct: 1710 INEHSTS-------YTFRS-EKGLLSATQFTQPAL-----TLMEKAAFEDLKSKGLIPAD 1756
Query: 119 -CFKNH--GNY--------IISLSD---LVRWMGKKAEN--------------MGID--- 147
F H G Y ++S+ +V + G + + I+
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 148 IFSGFSASEILY------DSKNNVCGIATNNFGINKEGIIKKNFQL---GMELYAKYTLF 198
+ + FS + Y + I N+ N E Q G +L A T+
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIV--NY--NVEN-----QQYVAAG-DLRALDTV- 1865
Query: 199 AEGSRGHLSKQIIKKFNLDNKKDPQTYSL-GIKE 231
++ IK +D + ++ SL ++
Sbjct: 1866 -----TNVLNF-IKLQKIDIIELQKSLSLEEVEG 1893
Score = 42.3 bits (99), Expect = 4e-04
Identities = 32/191 (16%), Positives = 51/191 (26%), Gaps = 73/191 (38%)
Query: 188 GMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIH 247
GM+LY + + +N + TY I ++ NP L IH
Sbjct: 1632 GMDLYKTSKAA---------QDV---WNRADNHFKDTYGFSILDIVINNP----VNLTIH 1675
Query: 248 TIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKT-----HPKIC 302
G G + N ++ + +D K F+E + T K
Sbjct: 1676 FGG-------EKGKRIRE---NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-- 1723
Query: 303 KILKGGKRISYGARTITTGGLQSLP---------------EFIFDGGA-FIG-------- 338
+L T T Q P + + A F G
Sbjct: 1724 GLLS---------ATQFT---Q--PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 339 --CNAGFMNVS 347
A M++
Sbjct: 1770 LASLADVMSIE 1780
Score = 41.6 bits (97), Expect = 7e-04
Identities = 54/317 (17%), Positives = 98/317 (30%), Gaps = 103/317 (32%)
Query: 138 GKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKN-------F--QLG 188
G + + MG+D++ A++ +++ + +G + I+ N F + G
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWN---RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 189 MELYAKYT--LFAEGSRGHL-SKQIIKKFNLDNKK----DP-----QTY---------SL 227
+ Y+ +F G L +++I K+ N + T
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 228 GIKELWTINPKLHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIG-Y--------IIS 278
E L KGL+ P D T+ G H S+G Y ++S
Sbjct: 1742 AAFED------LKSKGLI------PAD-ATFAG----H------SLGEYAALASLADVMS 1778
Query: 279 LDYKNPYLSPFEE-----FQRYKTHPKICKILKGGKRISYG------ARTITTGGLQSLP 327
E F R T + G R +YG R + ++L
Sbjct: 1779 ----------IESLVEVVFYRGMTMQVAVPRDELG-RSNYGMIAINPGRVAASFSQEALQ 1827
Query: 328 EFIFDGGAFIGCNAGFM------NVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK--L 379
+ +G G++ NV +G L A + + K K +
Sbjct: 1828 YVV----ERVGKRTGWLVEIVNYNVE---NQQYVA-AGDLRALDTVTNVLNFIKLQKIDI 1879
Query: 380 ITYKTSFQASWLYKELY 396
I + S + L+
Sbjct: 1880 IELQKSLSLEEVEGHLF 1896
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 54.2 bits (130), Expect = 6e-08
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 7 LNHSLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66
++H + + + +V +VGGG SGL+ A L+ +LE + LG
Sbjct: 1 MDHHHHHHHHMPRTTGMNVAVVGGGISGLAVAHHLRSRG------TDAVLLESSARLGGA 54
Query: 67 ILS----GAIID--PRSIF 79
+ + G +++ P S
Sbjct: 55 VGTHALAGYLVEQGPNSFL 73
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 54.2 bits (131), Expect = 6e-08
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-GAIIDPRS 77
+ VI+VG GP+GL A L+ + + VLE+ + S G R+
Sbjct: 9 HRSDASVIVVGAGPAGLMLAGELRLGG------VDVMVLEQLPQRTGE--SRGLGFTART 60
Query: 78 IFELF 82
+ E+F
Sbjct: 61 M-EVF 64
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 54.2 bits (131), Expect = 7e-08
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-GAIIDPR 76
+ VI+VG GP+G+ A L+ +++ VLE+ E S G R
Sbjct: 7 HHRSDAAVIVVGAGPAGMMLAGELRLAG------VEVVVLERLVERTGE--SRGLGFTAR 58
Query: 77 SIFELF 82
++ E+F
Sbjct: 59 TM-EVF 63
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 53.9 bits (130), Expect = 8e-08
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-GAIIDPRSI 78
E DV++VG G GLS A+ L + +++ V+E+ L + A +PR++
Sbjct: 3 DHEVDVLVVGAGLGGLSTAMFLARQG------VRVLVVERRPGLSPY--PRAAGQNPRTM 54
Query: 79 FELF 82
EL
Sbjct: 55 -ELL 57
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 53.5 bits (129), Expect = 1e-07
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 16 GPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-GAIID 74
++ DV++VGGGP GL A L+ + VLEK E H +
Sbjct: 43 ADDAALTTDVVVVGGGPVGLMLAGELRAGG------VGALVLEKLVEPVGH--DRAGALH 94
Query: 75 PRSIFELF 82
R++ E
Sbjct: 95 IRTV-ETL 101
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 53.8 bits (129), Expect = 1e-07
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAI-IDPRSIFE 80
+ DV+IVG GP+GL+ A +L +I+ C++E+ A I R++ E
Sbjct: 32 QVDVLIVGCGPAGLTLAAQLAAFP-----DIRTCIVEQKEGPMEL--GQADGIACRTM-E 83
Query: 81 LF 82
+F
Sbjct: 84 MF 85
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 52.8 bits (127), Expect = 2e-07
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-GAIIDPRS 77
IE DV+I+GGGP G++ A+ L + V+E+ H I PRS
Sbjct: 23 APIETDVLILGGGPVGMALALDLAHRQ------VGHLVVEQTDGTITH--PRVGTIGPRS 74
Query: 78 IFELF 82
+ ELF
Sbjct: 75 M-ELF 78
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 52.4 bits (126), Expect = 2e-07
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH-ILSGAII 73
DV+I+G G +GL+AA+ + K+ +LEK G + L+ +
Sbjct: 126 TTDVVIIGSGGAGLAAAVSARDAG------AKVILLEKEPIPGGNTKLAAGGM 172
Score = 35.1 bits (81), Expect = 0.071
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 19/76 (25%)
Query: 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCG-------------------IATN 171
+ + + + A G DI IL D+ V G IA
Sbjct: 255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG 314
Query: 172 NFGINKEGIIKKNFQL 187
F N E + K + +L
Sbjct: 315 GFAKNNERVSKYDPKL 330
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 52.0 bits (125), Expect = 2e-07
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGA---IIDPRS 77
++ V I+G GPSGL L + I +LE+ + ++L +++
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHK------AGIDNVILERQTP--DYVLGRIRAGVLEQGM 52
Query: 78 IFELF 82
+ +L
Sbjct: 53 V-DLL 56
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 51.6 bits (124), Expect = 3e-07
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
DV+++GGG SGLSA L++ + +L+ + G
Sbjct: 3 SVDVVVIGGGQSGLSAGYFLRRSG------LSYVILDAEASPG 39
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 52.3 bits (125), Expect = 3e-07
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAI 72
D+++VGGG AA + A K E KI +++K A + SGA+
Sbjct: 21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDK-----ASLERSGAV 68
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 51.0 bits (122), Expect = 5e-07
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61
+ V I+G G +G+ AI LK I + +LEKG+
Sbjct: 4 HHKVAIIGAGAAGIGMAITLKDFGIT-----DVIILEKGT 38
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 50.8 bits (122), Expect = 7e-07
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH-ILSGAII 73
S V++VG G +G +A++ K+ + +++K G + ++S +
Sbjct: 118 PSETTQVLVVGAGSAGFNASLAAKKAG------ANVILVDKAPFSGGNSMISAGGM 167
Score = 33.5 bits (77), Expect = 0.17
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 19/67 (28%)
Query: 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCG-------------------IATN 171
+++ + K A+ GID +++ + ++V G +AT
Sbjct: 250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATG 309
Query: 172 NFGINKE 178
+G+NKE
Sbjct: 310 GYGMNKE 316
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 50.6 bits (122), Expect = 9e-07
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
D +++G G G+ A +L + +K G
Sbjct: 8 TVDAVVIGAGFGGIYAVHKLHHELG-----LTTVGFDKADGPG 45
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 50.7 bits (122), Expect = 9e-07
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 16 GPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+ YDV++VG G +GL A R + + + E S +G
Sbjct: 15 ATTGTTSYDVVVVGAGIAGLYAIHRFRSQG------LTVRAFEAASGVG 57
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 50.3 bits (121), Expect = 1e-06
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
E DV++VG G SGL A RL++L + V+E ++G
Sbjct: 16 EVDVLVVGAGFSGLYALYRLRELG------RSVHVIETAGDVG 52
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 49.5 bits (119), Expect = 1e-06
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
+++DVII+GG +GLSAA+ QL I +++ G
Sbjct: 1 MKFDVIIIGGSYAGLSAAL---QLG---RARKNILLVDAG 34
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 49.9 bits (120), Expect = 1e-06
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
D +++G G +G+ A + Q +K+ +E G ++G
Sbjct: 9 ALDAVVIGAGVTGIYQAFLINQAG------MKVLGIEAGEDVG 45
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 49.4 bits (119), Expect = 2e-06
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SG 70
+ II+G G +GL A + K K + V + G ++G IL SG
Sbjct: 5 SENIIIGAGAAGLFCAAQ----LAKLGK--SVTVFDNGKKIGRKILMSG 47
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 49.4 bits (119), Expect = 2e-06
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SG 70
+ DV+I+G G +G+ AI A K+ + ++ V++ G I SG
Sbjct: 27 KQDVVIIGAGAAGMMCAIE----AGKRGR--RVLVIDHARAPGEKIRISG 70
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 49.7 bits (119), Expect = 2e-06
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH-ILSGAII 73
DV++VG G +G SAAI K+ ++EK +G + L+ +
Sbjct: 126 TVDVVVVGSGGAGFSAAISATDSG------AKVILIEKEPVIGGNAKLAAGGM 172
Score = 31.2 bits (71), Expect = 1.0
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 19/67 (28%)
Query: 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCG-------------------IATN 171
+ +V+ + A ID+ E+L D K V G +AT
Sbjct: 255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATG 314
Query: 172 NFGINKE 178
F N E
Sbjct: 315 GFAKNNE 321
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 48.7 bits (117), Expect = 2e-06
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
D ++G GP+GL+A++ L +I + +
Sbjct: 6 YIDCAVIGAGPAGLNASL---VLG---RARKQIALFDNN 38
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 49.0 bits (117), Expect = 3e-06
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 8 NHSLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH- 66
+HS +D ++VG G GL+AA LK + + V++ G G+
Sbjct: 9 HHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGG-----SVLVVDAGHAPGSGD 63
Query: 67 -ILSGAII 73
S A
Sbjct: 64 SGRSMAAF 71
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 48.8 bits (117), Expect = 3e-06
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66
E D +++G G +G S L ++ VLE+ ++ G H
Sbjct: 9 EADYLVIGAGIAGASTGYWLSAHG-------RVVVLEREAQPGYH 46
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 49.0 bits (117), Expect = 3e-06
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAI 72
P E +E D++I+GGG SG AA A K +K+ ++EK A + SGA+
Sbjct: 17 PTEVVETDILIIGGGFSGCGAAYEAAYWA--KLGGLKVTLVEK-----AAVERSGAV 66
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 48.6 bits (116), Expect = 3e-06
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLE 58
+++ DV IVG GPSGL+AA L++ + + V+E
Sbjct: 3 TLQRDVAIVGAGPSGLAAATALRKAG------LSVAVIE 35
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 48.3 bits (114), Expect = 5e-06
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67
I DV+++G GP+GL AA RL + +++ G
Sbjct: 6 HPDISVDVLVIGAGPTGLGAAKRL-----NQIDGPSWMIVDSNETPGGLA 50
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 48.1 bits (115), Expect = 5e-06
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQL-AIKKNKEIKICVLEKGSELGAH-ILSGAII 73
E DV++ G G +G++A+I + A + VLE+ S G L+G I
Sbjct: 41 EADVVVAGYGIAGVAASIEAARAGA-------DVLVLERTSGWGGATALAGGFI 87
Score = 29.6 bits (67), Expect = 3.4
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 133 LVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG 174
L++ + + AE +G+ ++ D V GI +G
Sbjct: 204 LMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYG 245
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 47.5 bits (113), Expect = 7e-06
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLE 58
YD I+VGGG SGL AA L K+ +LE
Sbjct: 2 YDAIVVGGGFSGLKAARDLTN------AGKKVLLLE 31
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 47.2 bits (113), Expect = 1e-05
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
I DV I+G G +G+ A K+ K+ ++E G+ G
Sbjct: 6 VINVDVAIIGTGTAGMGAYRAAKKHT------DKVVLIEGGA-YG 43
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 46.6 bits (110), Expect = 1e-05
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63
+++G G +A+RL + ++ +LE G
Sbjct: 5 YVPAVVIGTGYGAAVSALRLGE------AGVQTLMLEMGQLW 40
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 46.2 bits (110), Expect = 2e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
++VG G GL A L + +I VLEK + +G
Sbjct: 2 RAVVVGAGLGGLLAGAFLA----RNGH--EIIVLEKSAMIG 36
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 46.0 bits (110), Expect = 2e-05
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
S++YDV+++G G +G A RL + + + ELG
Sbjct: 2 SLKYDVVVIGAGGAGYHGAFRLAKAKYN-----VLMA-DPKGELG 40
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 46.0 bits (110), Expect = 2e-05
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
I+ DV ++G GP G AAI+ QL K +C+ EK LG
Sbjct: 4 PIDADVTVIGSGPGGYVAAIKAAQLGFK-----TVCI-EKNETLG 42
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 46.0 bits (108), Expect = 2e-05
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63
P I+YDV+IVG GP G + A ++L K+ + + G
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYA---RELV---GAGYKVAMFDIGEID 81
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 46.0 bits (109), Expect = 2e-05
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLE 58
+ + V+++GGGP+GL +A L++ K+ VLE
Sbjct: 6 GKVKGSHSVVVLGGGPAGLCSAFELQKA------GYKVTVLE 41
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 44.1 bits (105), Expect = 3e-05
Identities = 14/17 (82%), Positives = 17/17 (100%)
Query: 23 YDVIIVGGGPSGLSAAI 39
+DVI+VGGGPSGLSAA+
Sbjct: 2 WDVIVVGGGPSGLSAAL 18
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 46.0 bits (108), Expect = 3e-05
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78
E + ++I+G GP+GL AA+RL +L K + E G S +
Sbjct: 6 ELLTPKIVIIGAGPTGLGAAVRLTELGYK-----NWHLYECNDTPGGLSRSFLDENGF-T 59
Query: 79 FELFP 83
++L
Sbjct: 60 WDLGG 64
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 45.7 bits (108), Expect = 3e-05
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLE 58
++ VI+VG G SG+SAA RL + I + +LE
Sbjct: 2 TVGPRVIVVGAGMSGISAAKRLSEAGIT-----DLLILE 35
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 45.3 bits (107), Expect = 4e-05
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLE 58
S V+IVG G +GLSAA L ++ VLE
Sbjct: 28 KATSNPKHVVIVGAGMAGLSAAYVLAGAG------HQVTVLE 63
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 45.1 bits (106), Expect = 5e-05
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
+++G G G AA+RL Q I ++E G
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQ------AGIPTQIVEMG 43
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 44.8 bits (107), Expect = 5e-05
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
S E DV+I+GGGP G AAI+ QL K C+ EK LG
Sbjct: 3 GSDENDVVIIGGGPGGYVAAIKAAQLGFK-----TTCI-EKRGALG 42
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 44.8 bits (107), Expect = 5e-05
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+ +DV+I+GGGP+G AAI+ QL CV EK +LG
Sbjct: 3 NKSHDVVIIGGGPAGYVAAIKAAQLGFN-----TACV-EKRGKLG 41
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 44.8 bits (107), Expect = 5e-05
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+IE + ++VG GP G AAIR QL K V EKG+ LG
Sbjct: 1 AIETETLVVGAGPGGYVAAIRAAQLGQK-----VTIV-EKGN-LG 38
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 44.4 bits (106), Expect = 6e-05
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
EYDV+++GGGP G SAA +K V E+ LG
Sbjct: 4 DAEYDVVVLGGGPGGYSAAFAAADEGLK-----VAIV-ERYKTLG 42
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 44.5 bits (106), Expect = 7e-05
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+ + YD+I++G GP G AI+ QL +K V EK S G
Sbjct: 21 QSMMAYDLIVIGSGPGGYVCAIKAAQLGMK-----VAVV-EKRSTYG 61
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 44.4 bits (105), Expect = 7e-05
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLE 58
+ DV++VGGG SG++AA L + + VLE
Sbjct: 4 KCDVVVVGGGISGMAAAKLLHD------SGLNVVVLE 34
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 44.1 bits (105), Expect = 7e-05
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGA 71
S + D I++G G GL+ A L ++ V E +G S
Sbjct: 2 STDIDCIVIGAGVVGLAIARALAA------GGHEVLVAEAAEGIGTGT-SSR 46
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD;
2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 458
Score = 44.4 bits (106), Expect = 7e-05
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIK 47
+++I+ ++I+GGGP G AAIR QL I
Sbjct: 1 QQTIQTTLLIIGGGPGGYVAAIRAGQLGIP 30
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 44.0 bits (105), Expect = 8e-05
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 12/47 (25%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAI---RLKQLAIKKNKEIKICVLEKG 60
+ ++DV+IVG G +G SAA+ R + +L+K
Sbjct: 11 EEKERDFDVVIVGAGAAGFSAAVYAAR---------SGFSVAILDKA 48
Score = 29.8 bits (68), Expect = 2.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIK 47
V+ +GGG SG AAI + +
Sbjct: 157 RVVTIGGGNSGAIAAISMSEYVKN 180
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 44.4 bits (106), Expect = 8e-05
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIK 47
V ++G G + ++AA++ + +
Sbjct: 2 EPPVQVAVIGSGGAAMAAALKAVEQGAQ 29
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 44.4 bits (104), Expect = 9e-05
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLE 58
+ VII+G G +GL AA L Q I+ VLE
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQ-----DCLVLE 39
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET:
FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 44.1 bits (105), Expect = 9e-05
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+ ++I+GGGP+G AA+ + ++ V++ +G
Sbjct: 1 MVTRIVILGGGPAGYEAALVAATSHPET---TQVTVIDCDG-IG 40
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 44.0 bits (105), Expect = 1e-04
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
YDV+++GGGP G A+I+ QL +K CV EK LG
Sbjct: 2 PYDVVVIGGGPGGYVASIKAAQLGMK-----TACV-EKRGALG 38
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 43.8 bits (104), Expect = 1e-04
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 22 EYDVIIVGGGPSGLSAAIRL-KQLAIKKNKEIKICVLEKGSELGAH 66
YD IIVGGG GL+ A L K I + VLEKG L
Sbjct: 21 SYDAIIVGGGGHGLATAYFLAKNHGIT-----NVAVLEKG-WLAGG 60
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 43.6 bits (102), Expect = 1e-04
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67
+D +IVG G +G A RL ++ ++++ +G +
Sbjct: 29 GFDYLIVGAGFAGSVLAERLAS------SGQRVLIVDRRPHIGGNA 68
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 43.8 bits (104), Expect = 1e-04
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
EYD I +GGG +G + L+ + + ++++ LG
Sbjct: 41 PREYDAIFIGGGAAGRFGSAYLRAMG------GRQLIVDRWPFLG 79
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 43.2 bits (101), Expect = 2e-04
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63
++++G GP+GL A +LKQ I ++EK E
Sbjct: 3 ILVIGAGPAGLVFASQLKQARP----LWAIDIVEKNDEQ 37
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 43.4 bits (102), Expect = 2e-04
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 13 NKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69
N + +DVI++GGG GL+A L K +LE +G S
Sbjct: 30 NIEDTDKDGPWDVIVIGGGYCGLTATRDLTV------AGFKTLLLEARDRIGGRSWS 80
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 43.0 bits (102), Expect = 2e-04
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 19/75 (25%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGA------IIDP 75
Y+ +++GGG G + A L K+NK + E G +G ++
Sbjct: 17 HYEAVVIGGGIIGSAIAYYLA----KENK--NTALFESG-TMG----GRTTSAAAGML-- 63
Query: 76 RSIFELFPKEKLNKL 90
+ E ++
Sbjct: 64 GAHAECEERDAFFDF 78
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 42.9 bits (102), Expect = 2e-04
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIK 47
S ++DVI++G GP G AAI+ QL +K
Sbjct: 1 SQKFDVIVIGAGPGGYVAAIKSAQLGLK 28
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 42.9 bits (99), Expect = 2e-04
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 13 NKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIK--KNKEIKICVLEKGSELGAHILSG 70
G + Y + IVGGG G++A L +LA I + + E + H G
Sbjct: 47 APLGRLPAGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPG 106
Query: 71 AIID 74
Sbjct: 107 IKAI 110
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 42.7 bits (101), Expect = 2e-04
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+++G G GL +A RL + ++ V E+ G
Sbjct: 2 KTVVIGAGLGGLLSAARLSK------AGHEVEVFERLPITG 36
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 42.4 bits (99), Expect = 3e-04
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67
YD IIVG G G A LK+ K+ V+EK + +G +
Sbjct: 2 YDYIIVGSGLFGAVCANELKK------LNKKVLVIEKRNHIGGNA 40
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus
thermophilus} PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 42.5 bits (101), Expect = 3e-04
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
YD+I++G GP G AAIR QL +K + V E G +G
Sbjct: 3 PMKTYDLIVIGTGPGGYHAAIRAAQLGLK-----VLAV-EAGE-VG 41
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 42.2 bits (99), Expect = 3e-04
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK---GSELGAHILSGAII 73
++IVG G G S A+ L + + VL+ S + A +I
Sbjct: 6 SSSLLIVGAGTWGTSTALHLARRGYT-----NVTVLDPYPVPSAISAGNDVNKVI 55
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD;
1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 41.7 bits (99), Expect = 3e-04
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 23 YDVIIVGGGPSGLSAAI 39
YDV+IVG GP+G +AAI
Sbjct: 2 YDVLIVGSGPAGAAAAI 18
Score = 29.4 bits (67), Expect = 2.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIK 47
V ++GGG SG+ AAI L +
Sbjct: 146 RVAVIGGGNSGVEAAIDLAGIVEH 169
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide
binding, FAD, flavoprotein, oxidoreductase; HET: FAD;
1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 41.7 bits (99), Expect = 4e-04
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 18 RESIEYDVIIVGGGPSGLSAAI 39
+ ++DVIIVG GP+ AA+
Sbjct: 11 KPGEKFDVIIVGLGPAAYGAAL 32
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
{Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB:
1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A*
3p4s_A*
Length = 602
Score = 42.3 bits (100), Expect = 4e-04
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66
++ + D+ IVG G +GL AAI Q N KI ++ K + +H
Sbjct: 2 QTFQADLAIVGAGGAGLRAAIAAAQ----ANPNAKIALISKVYPMRSH 45
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta
fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium
loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A*
3alm_A* 3all_A*
Length = 379
Score = 41.9 bits (99), Expect = 4e-04
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL---GAHI 67
+ GGG +GL+AAI LKQ + + EK SEL GA I
Sbjct: 14 AEVAGGGFAGLTAAIALKQ------NGWDVRLHEKSSELRAFGAGI 53
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide
dehydrogenase, 2-oxoglutarate dehydrogenase comple
pyruvate dehydrogenase complex; HET: FAD; 1.70A
{Thermus thermophilus} PDB: 2eq7_A*
Length = 455
Score = 41.7 bits (99), Expect = 5e-04
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
YD++++G GP G AAIR QL +K V EK LG
Sbjct: 2 YDLLVIGAGPGGYVAAIRAAQLGMK-----VGVV-EKEKALG 37
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 41.8 bits (99), Expect = 5e-04
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 19/78 (24%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----------LSGAIID 74
+++VGG G S A RL++L ++E +I ++E+G +I + G I +
Sbjct: 39 IVVVGGVAGGASVAARLRRL----SEEDEIIMVERGE----YISFANCGLPYYIGGVITE 90
Query: 75 PRSIFELFPKEKLNKLFN 92
+ + + E+++K FN
Sbjct: 91 RQKLL-VQTVERMSKRFN 107
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 41.6 bits (96), Expect = 5e-04
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+ I+G G +GLSAA L ++ + +K G
Sbjct: 4 PIAIIGTGIAGLSAAQALTA------AGHQVHLFDKSRGSG 38
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 41.7 bits (99), Expect = 5e-04
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 19/78 (24%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----------LSGAIID 74
+I+GG +G+SAA+++ + ++ + LEKG +SGAI
Sbjct: 39 YVIIGGDAAGMSAAMQIVRN----DENANVVTLEKGE----IYSYAQCGLPYVISGAIAS 90
Query: 75 PRSIFELFPKEKLNKLFN 92
+ + +
Sbjct: 91 TEKLI-ARNVKTFRDKYG 107
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD;
1.54A {Staphylococcus aureus}
Length = 438
Score = 41.7 bits (99), Expect = 6e-04
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 19/78 (24%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----------LSGAIID 74
+++VG G + A ++++L +KE I + EK + + + D
Sbjct: 4 IVVVGAVAGGATCASQIRRL----DKESDIIIFEKDR----DMSFANCALPYVIGEVVED 55
Query: 75 PRSIFELFPKEKLNKLFN 92
R + EK
Sbjct: 56 RRYAL-AYTPEKFYDRKQ 72
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 41.2 bits (96), Expect = 6e-04
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69
++IVG G SG +L + K ++ ++++ +G +
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAE------KGHQVHIIDQRDHIGGNSYD 44
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 41.5 bits (98), Expect = 6e-04
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 19 ESIEYDVIIVGGGPSGLSAAI 39
+ YDV+IVG GP+G +AA+
Sbjct: 209 KRDAYDVLIVGSGPAGAAAAV 229
Score = 32.7 bits (75), Expect = 0.31
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFP 83
V ++GGG SG+ AAI L + + +LE E+ A + D ++
Sbjct: 357 RVAVIGGGNSGVEAAIDLAGIV------EHVTLLEFAPEMKA---DQVLQD-----KVRS 402
Query: 84 KEKLNKLFNTPVIE 97
+ ++ + N E
Sbjct: 403 LKNVDIILNAQTTE 416
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 41.3 bits (96), Expect = 6e-04
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67
+D+ +VG G GL+ A +++A + +K ++ VLE+ +G +
Sbjct: 7 RFDLFVVGSGFFGLTIA---ERVATQLDK--RVLVLERRPHIGGNA 47
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 41.3 bits (95), Expect = 6e-04
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69
V+IVG G +G A L++ + + + + V +K + G + +
Sbjct: 3 QVLIVGAGMTGSLCAALLRR---QTSGPLYLAVWDKADDSGGRMTT 45
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 41.4 bits (98), Expect = 7e-04
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----------LSGAIID 74
++I+GG G SAA R ++L ++ +I + E+G ++ +SG I
Sbjct: 4 ILIIGGVAGGASAAARARRL----SETAEIIMFERGE----YVSFANCGLPYHISGEIAQ 55
Query: 75 PRSIFELFPKEKLNKLFN 92
++ L E FN
Sbjct: 56 RSALV-LQTPESFKARFN 72
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 40.6 bits (96), Expect = 0.001
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIK 47
YDV+++G GP G AAIR QL +
Sbjct: 3 HYDVVVLGAGPGGYVAAIRAAQLGLS 28
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 40.4 bits (95), Expect = 0.001
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAII 73
D++I G G GLS A+ L Q I K+ +LE SE+ G I
Sbjct: 6 DILIAGAGIGGLSCALALHQAGIG-----KVTLLESSSEIRP---LGVGI 47
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 40.7 bits (96), Expect = 0.001
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 8 NHSLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL---G 64
+H + I++G G GLSAA+ LKQ I V E E+ G
Sbjct: 9 HHHHSSGENLYFQGHMKAIVIGAGIGGLSAAVALKQ------SGIDCDVYEAVKEIKPVG 62
Query: 65 AHI 67
A I
Sbjct: 63 AAI 65
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 40.4 bits (95), Expect = 0.001
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 12 INKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
I+ D+ I+GGGP+G+ AA + I ++E +LG
Sbjct: 4 IHNPATDHHDMRDLTIIGGGPTGIFAAFQCGMN------NISCRIIESMPQLG 50
Score = 28.4 bits (64), Expect = 6.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIK 47
V+IVGGG S L + L + A
Sbjct: 165 RVVIVGGGDSALDWTVGLIKNAAS 188
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 40.4 bits (95), Expect = 0.001
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
++YD+II+G G G +A + + + + +
Sbjct: 1 MKYDLIIIGSGSVGAAAGYYATRAG------LNVLMTDAH 34
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 40.3 bits (93), Expect = 0.001
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 14/68 (20%)
Query: 9 HSLINKYGPRESI-------EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61
H LIN +G + I VII+G G SGL+AA +L+ + + +LE
Sbjct: 259 HGLIN-FGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFG------MDVTLLEARD 311
Query: 62 ELGAHILS 69
+G + +
Sbjct: 312 RVGGRVAT 319
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 40.4 bits (94), Expect = 0.002
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 21/168 (12%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG------AHILSG 70
E++ I++G GP GL A + L Q ++E+G E+
Sbjct: 102 APENLTERPIVIGFGPCGLFAGLVLAQ------MGFNPIIVERGKEVRERTKDTFGFWRK 155
Query: 71 AIIDPRS-IF--ELFPKEKLNKLFNTPVIEERFLFLSSKKSY---KIPSWILPICFKNHG 124
++P S + E + + V + F + P IL + + G
Sbjct: 156 RTLNPESNVQFGEGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIG 215
Query: 125 NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNN 172
+ L ++ M +G +I ++ + + G+ +N
Sbjct: 216 TFK--LVTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTLSN 260
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 39.9 bits (94), Expect = 0.002
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
++ YD+ I+GGGP GL A + + ++E +LG
Sbjct: 4 DTKVYDITIIGGGPVGLFTAFYGGMR------QASVKIIESLPQLG 43
Score = 28.3 bits (64), Expect = 6.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLA 45
V I+GGG S + A+ L+ +A
Sbjct: 156 RVAILGGGDSAVDWALMLEPIA 177
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 40.0 bits (94), Expect = 0.002
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG----SELGAHI 67
+ +VGG SGL+AA+ L+ + + V E+ S G I
Sbjct: 8 IAVVGGSISGLTAALMLRD------AGVDVDVYERSPQPLSGFGTGI 48
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 39.9 bits (92), Expect = 0.002
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69
VII+G G SGL+AA +L+ + + +LE +G + +
Sbjct: 107 TGKVIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRVAT 148
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET:
FAD; 2.60A {Enterococcus faecalis}
Length = 452
Score = 39.8 bits (94), Expect = 0.002
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 22/87 (25%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----------LSGAIID 74
++I+G +G+SAAI ++ + +I +++K + + + I +
Sbjct: 5 IVIIGASFAGISAAIASRKK----YPQAEISLIDKQA----TVGYLSGGLSAYFNHTINE 56
Query: 75 PRSIF----ELFPKEKLNKLFNTPVIE 97
E ++K+ L N V+
Sbjct: 57 LHEARYITEEELRRQKIQLLLNREVVA 83
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 39.9 bits (93), Expect = 0.002
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69
DV++VG GP+GL+AA A + ++ +L++ +E G +L
Sbjct: 130 DVLVVGAGPAGLAAAR----EASRSGA--RVMLLDERAEAGGTLLD 169
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 39.4 bits (93), Expect = 0.003
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 22/87 (25%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----------LSGAIID 74
VI++G G A L L + + +I EKG I L G + D
Sbjct: 3 VIVLGSSHGGYEAVEELLNL----HPDAEIQWYEKGD----FISFLSAGMQLYLEGKVKD 54
Query: 75 PRSIF----ELFPKEKLNKLFNTPVIE 97
S+ E +N NT +
Sbjct: 55 VNSVRYMTGEKMESRGVNVFSNTEITA 81
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 39.1 bits (90), Expect = 0.003
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIF 79
+ IVG G +GL + L+Q ++ + V +++ +
Sbjct: 25 IGIVGAGTAGLHLGLFLRQ------HDVDVTVYTDRK--PDEYSGLRLLNTVAHN 71
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 39.2 bits (92), Expect = 0.003
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66
E+D +++G G +G+ AA+++ Q +L K +H
Sbjct: 4 PVREFDAVVIGAGGAGMRAALQISQ------SGQTCALLSKVFPTRSH 45
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 39.1 bits (92), Expect = 0.003
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 7/44 (15%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65
+ +++++GGG G++ A +LA K+ + ++ V+EK +G+
Sbjct: 5 KSEIVVIGGGIVGVTIA---HELA-KRGE--EVTVIEKR-FIGS 41
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 38.9 bits (89), Expect = 0.004
Identities = 40/270 (14%), Positives = 74/270 (27%), Gaps = 21/270 (7%)
Query: 25 VIIVGGGPSGLSAAIRLK------QLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78
+IIVGGG +G A L + + + ++ I ++E + G RS
Sbjct: 10 IIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRST 69
Query: 79 FELFPKEKLNKLFNTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMG 138
I+E S+K S + C N S
Sbjct: 70 LSKIG------------IDENDFIRQCDASFKQGSRFINWCKDPQSNVADSYLHPFSLPH 117
Query: 139 KKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLF 198
E + + ++ + + + +FQ + F
Sbjct: 118 GHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYHFQNNYGYHLNAAKF 177
Query: 199 AEGSRGHLSKQIIKKFNLDNKKDPQTYSLG-IKELWTINPKLHKKGLVIHTIGWP--LDY 255
++ H ++++ D+ G I++L T L I G L
Sbjct: 178 SQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLG 237
Query: 256 KTYGGGFLYHMENNQISIGYIISLDYKNPY 285
+ FL I + Y +
Sbjct: 238 EHLQVPFLSQKSVLFNDRALAIQVPYSDAN 267
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A*
1qlb_A*
Length = 660
Score = 39.2 bits (92), Expect = 0.004
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQ 43
+ D +++GGG +GL AA+ +Q
Sbjct: 2 KVQYCDSLVIGGGLAGLRAAVATQQ 26
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 38.7 bits (91), Expect = 0.004
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
DV+IVG GP+GL A + + ++ E G
Sbjct: 4 DHTDVLIVGAGPTGLFAGFYVGMR------GLSFRFVDPLPEPG 41
Score = 29.1 bits (66), Expect = 4.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLA 45
V+IVGGG S + A+ L A
Sbjct: 154 RVLIVGGGDSAVDWALNLLDTA 175
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 38.8 bits (91), Expect = 0.004
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61
DV+I+G G +GLS A+RL ++ VL KG
Sbjct: 5 PEHSCDVLIIGSGAAGLSLALRLADQH-------QVIVLSKGP 40
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur
initiative; 2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 38.7 bits (91), Expect = 0.005
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 23/83 (27%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----------LSGAIID 74
V+++G G AA R K+L + E + ++++ S I +SG + +
Sbjct: 6 VVVIGAVALGPKAACRFKRL----DPEAHVTMIDQAS----RISYGGCGIPYYVSGEVSN 57
Query: 75 PRSIFELFPK-----EKLNKLFN 92
S+ E +
Sbjct: 58 IESLQATPYNVVRDPEFFRINKD 80
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid,
thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A
{Campylobacter jejuni}
Length = 315
Score = 38.3 bits (90), Expect = 0.005
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 23 YDVIIVGGGPSGLSAAI 39
DV I+GGGP+GLSA +
Sbjct: 5 LDVAIIGGGPAGLSAGL 21
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 38.2 bits (90), Expect = 0.006
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61
V+I+GGG +G+SAA R+K+L E + V E
Sbjct: 6 VVIIGGGAAGMSAASRVKRL----KPEWDVKVFEATE 38
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 38.2 bits (89), Expect = 0.006
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 9/47 (19%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK---GSELGAH 66
YDV++VGGGP GL+ A Q+A ++ ++ VLE+ +E G
Sbjct: 5 YDVVVVGGGPVGLATAW---QVA-ERGH--RVLVLERHTFFNENGGT 45
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 38.1 bits (89), Expect = 0.006
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66
S +DVI+VG G G++A +L + +K +++ +
Sbjct: 1 STHFDVIVVGAGSMGMAAGYQLAKQG------VKTLLVDAFDPPHTN 41
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase,
NADP+ B reduced izoalloxazine bending, oxidoreductase;
HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 37.9 bits (89), Expect = 0.006
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 23 YDVIIVGGGPSGLSAAI 39
D I+GGGP+GLSA +
Sbjct: 2 IDCAIIGGGPAGLSAGL 18
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 37.5 bits (88), Expect = 0.008
Identities = 13/21 (61%), Positives = 19/21 (90%)
Query: 19 ESIEYDVIIVGGGPSGLSAAI 39
+ +YDV+I+GGGP+GL+AAI
Sbjct: 5 TAHDYDVVIIGGGPAGLTAAI 25
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 38.1 bits (89), Expect = 0.008
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 5 SSLNHSLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
+ ++ S+ +Y P E+D ++VG G +GL AA L + + K
Sbjct: 2 TKVSDSISTQY-PVVDHEFDAVVVGAGGAGLRAAFGLSE------AGFNTACVTK 49
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 37.8 bits (88), Expect = 0.008
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 25 VIIVGGGPSGLSAAIRLKQ 43
V I+GGGP GL+ A L+Q
Sbjct: 29 VAIIGGGPVGLTMAKLLQQ 47
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 37.6 bits (87), Expect = 0.009
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 24 DVIIVGGGPSGLSAAI 39
DV I+GGGP+G+ AA+
Sbjct: 110 DVAIIGGGPAGIGAAL 125
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 38.0 bits (89), Expect = 0.009
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
YD II GGG +GL+ A +L + N +IK+ V+EKG
Sbjct: 24 TYDYIIAGGGLTGLTVAAKLTE-----NPKIKVLVIEKG 57
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 37.5 bits (88), Expect = 0.009
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61
VI+VG +G A + + + + E
Sbjct: 3 VIVVGCTHAGTFAVKQTIAD----HPDADVTAYEMND 35
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 38.0 bits (89), Expect = 0.009
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
D II GGG +GL+ A RL + N I + V+E G
Sbjct: 19 TVDYIIAGGGLTGLTTAARLTE-----NPNISVLVIESG 52
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 37.3 bits (85), Expect = 0.012
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62
++IVG G +GL A L + + +LE +
Sbjct: 47 ILIVGAGIAGLVAGDLLTRAG------HDVTILEANAN 78
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 37.4 bits (86), Expect = 0.013
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 8 NHSLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK----GSEL 63
+ + + + ++VG GP GL AA+ L L ++ ++EK
Sbjct: 80 SQPVYQQGQACTN--TKCLVVGAGPCGLRAAVELALLG------ARVVLVEKRIKFSRHN 131
Query: 64 GAHILSGAIIDPRSI 78
H+ I D R++
Sbjct: 132 VLHLWPFTIHDLRAL 146
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 36.5 bits (84), Expect = 0.020
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+ I+G GPSG++ + K + ++ EK ++ G
Sbjct: 5 IAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWG 44
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics
consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium
tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A*
2c7g_A*
Length = 456
Score = 36.4 bits (84), Expect = 0.021
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 25 VIIVGGGPSGLSAAIRL-KQLAIKKNKEIKICVLEK 59
+ IVG GPS AA L K ++ ++ + +LE
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEM 41
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 35.9 bits (83), Expect = 0.032
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
V++VGGG G +AA +K + I++ ++E
Sbjct: 5 VVVVGGGTGGATAAKYIK----LADPSIEVTLIEP 35
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 34.3 bits (79), Expect = 0.042
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 25 VIIVGGGPSGLSAAIRLKQ-----LAIKKNKEIKICVLEKGSELGAHILSG 70
I+ G ++ ++L Q I E I LE+ A ++ G
Sbjct: 6 FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPG 56
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 35.8 bits (83), Expect = 0.043
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFP- 83
+ +VG GP+GL+ AI + ++ + + SE+G I + F
Sbjct: 376 LAVVGAGPAGLAFAINAAA------RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLR 429
Query: 84 --KEKLNKL-----FNTPV 95
+ + N V
Sbjct: 430 YYRRMIEVTGVTLKLNHTV 448
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 35.7 bits (83), Expect = 0.044
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
YD+I++GGG G++AA R + K+ ++EK LG
Sbjct: 3 YDLIVIGGGSGGMAAARRAARHN------AKVALVEKS-RLG 37
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 35.5 bits (82), Expect = 0.047
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
V+++GGG G++ A L+ ++KI ++
Sbjct: 5 VVVIGGGVGGIATAYNLR----NLMPDLKITLISD 35
>1jb0_C Photosystem I iron-sulfur center; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C*
3lw5_C* 2o01_C*
Length = 80
Score = 32.1 bits (73), Expect = 0.064
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 503 ARYCPAGVYEFIIEKNK---IQHLQINAQNCIHCKTC 536
R CP V E + ++C+ CK C
Sbjct: 17 VRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRC 53
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 35.0 bits (81), Expect = 0.064
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFP- 83
V++VG GPSGL AA L ++ + + E G +LG + + + S +
Sbjct: 394 VLVVGAGPSGLEAAR---ALGVRGYDVV---LAEAGRDLGGRVTQESALPGLSAWGRVKE 447
Query: 84 --KEKLNKL------FNTPV 95
+ L +L +P+
Sbjct: 448 YREAVLAELPNVEIYRESPM 467
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A
{Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Length = 103
Score = 32.6 bits (74), Expect = 0.064
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 503 ARYCPAGVYEFIIEKNKIQ----HLQINAQNCIHCKTC 536
CP V+++ +N Q CI C C
Sbjct: 52 INACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMAC 89
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 34.7 bits (80), Expect = 0.070
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
V+++GG L+AA LK+L + + V+ K
Sbjct: 4 VLVLGGRFGALTAAYTLKRLV---GSKADVKVINK 35
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 34.7 bits (79), Expect = 0.071
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 24 DVIIVGGGPSGLSAAIRLKQ 43
V+++G G GLS+A+ L +
Sbjct: 8 RVVVLGSGVIGLSSALILAR 27
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 34.8 bits (81), Expect = 0.072
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 28/82 (34%)
Query: 22 EYDVIIVGGGPSG------LSAAIRLKQLAIKKNKEIKICVLEKG----SELGAHILSGA 71
++D ++VG G +G L+ + ++ + VLE G + LGA
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTE-----------DPDVSVLVLEAGVSDENVLGAEA---- 46
Query: 72 IIDPRSIFELFPKEKLNKLFNT 93
P L P + + T
Sbjct: 47 ---PLLAPGLVPNSIFDWNYTT 65
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 34.5 bits (78), Expect = 0.089
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFE 80
YDVII+G G + L KI VL++ G S + + + F+
Sbjct: 20 HYDVIILGTGLKECILSGLLSH------YGKKILVLDRNPYYGGETASLNLTNLYNTFK 72
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 34.6 bits (80), Expect = 0.095
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 18/59 (30%)
Query: 25 VIIVGGGPSGLSAAIRLKQ------LAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77
V+IVG GPSG AA L + L + ++G H+ A +
Sbjct: 392 VLIVGAGPSGSEAARVLMESGYTVHL------------TDTAEKIGGHLNQVAALPGLG 438
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 34.2 bits (79), Expect = 0.11
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIK 47
+YD+I++GGG GL+A + K
Sbjct: 107 DYDLIVIGGGSGGLAAGKEAAKYGAK 132
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 34.0 bits (78), Expect = 0.12
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
V+I+G G G+ AA +K+ ++ ++
Sbjct: 7 VVILGAGTGGMPAAYEMKE---ALGSGHEVTLISA 38
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 34.2 bits (78), Expect = 0.13
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
+ I+G GPSGL A K L + ++ + E+ G
Sbjct: 9 IAIIGAGPSGLVTA---KALL-AEKAFDQVTLFERRGSPG 44
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 34.0 bits (79), Expect = 0.13
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIK 47
+ YD I +GGG G+++ R K
Sbjct: 2 TKHYDYIAIGGGSGGIASINRAAMYGQK 29
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 34.0 bits (79), Expect = 0.14
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 17/50 (34%)
Query: 17 PRESIEYDVIIVGGGPSG------LSAAIRLKQLAIKKNKEIKICVLEKG 60
+ D++IVGGG +G LS + + ++ ++E G
Sbjct: 12 VEHAPNCDIVIVGGGSAGSLLAARLSE-----------DPDSRVLLIEAG 50
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 33.7 bits (78), Expect = 0.15
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIK 47
+D++++GGG GL+ A QL K
Sbjct: 6 SFDLLVIGGGSGGLACAKEAAQLGKK 31
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 33.7 bits (78), Expect = 0.16
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIK 47
+YD+II+GGG GL+AA Q K
Sbjct: 32 DYDLIIIGGGSGGLAAAKEAAQYGKK 57
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 33.6 bits (78), Expect = 0.16
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 20 SIEYDVIIVGGGPSGLSAAIR 40
S ++D+ ++G G G+ AA
Sbjct: 24 SFDFDLFVIGSGSGGVRAARL 44
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 33.7 bits (78), Expect = 0.17
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 22 EYDVIIVGGGPSGLSAAIR 40
+YD+I++GGG +GL+ A
Sbjct: 9 DYDLIVIGGGSAGLACAKE 27
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER;
HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 33.5 bits (76), Expect = 0.18
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 25 VIIVGGGPSGLSAAIRLKQ 43
V+++G G GLS A+ + +
Sbjct: 3 VVVIGAGVIGLSTALCIHE 21
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase,
covalently linked FAD, C4A-adduct, flavoprotein,
oxidoreductase; HET: FAO; 1.86A {Arthrobacter
globiformis} PDB: 3nne_A* 3ljp_A*
Length = 546
Score = 33.7 bits (78), Expect = 0.18
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
E+D I+VGGG +G + A RL + + + + ++E G
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSE-----DPAVSVALVEAG 46
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 33.6 bits (78), Expect = 0.19
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 20 SIEYDVIIVGGGPSGLSAAIR 40
+ +YD+ ++GGG G+ +
Sbjct: 3 AFDYDLFVIGGGSGGVRSGRL 23
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 33.5 bits (75), Expect = 0.21
Identities = 34/296 (11%), Positives = 78/296 (26%), Gaps = 24/296 (8%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPK 84
++IVGGG +G AA L + ++ I ++E + + I + +F F
Sbjct: 8 IVIVGGGTAGWMAASYLVRAL---QQQANITLIESAAIPRIGVGEATIPSLQKVFFDFLG 64
Query: 85 EKLNKLFNTPVIEERFLFLSSKKSYKIPS----WILPICFKNHGNYIISLSDLVRWMGKK 140
I ER ++K W ++ ++ G
Sbjct: 65 -----------IPEREWMPQVNGAFKAAIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVP 113
Query: 141 AENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAE 200
+ + + Y + +G + + + + L A+
Sbjct: 114 LTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHAWHFDAH----LVAD 169
Query: 201 GSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWP--LDYKTY 258
+ ++ + + + I L T + + L I G L +
Sbjct: 170 FLKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQAL 229
Query: 259 GGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYG 314
F+ + ++ + + + R G
Sbjct: 230 KEPFIDMSDYLLCDSAVASAVPNDDARDGVEPYTSSIAMNSGWTWKIPMLGRFGSG 285
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 33.3 bits (77), Expect = 0.23
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 17/45 (37%)
Query: 22 EYDVIIVGGGPSG------LSAAIRLKQLAIKKNKEIKICVLEKG 60
+D +IVGGG +G L+ N + + ++E G
Sbjct: 6 HFDFVIVGGGTAGNTVAGRLAE-----------NPNVTVLIVEAG 39
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 33.3 bits (77), Expect = 0.23
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 23/88 (26%)
Query: 25 VIIVGGGPSGLSAAI-RLKQLAIKKNKEIKICVLEKGSELGAHI----------LSGAII 73
+++VG +G + L +I V ++ S +I + I
Sbjct: 38 IVVVGANHAGTACIKTMLTNY----GDANEIVVFDQNS----NISFLGAGMALWIGEQIA 89
Query: 74 DPRSIF----ELFPKEKLNKLFNTPVIE 97
P +F E +PV
Sbjct: 90 GPEGLFYSDKEELESLGAKVYMESPVQS 117
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 33.2 bits (77), Expect = 0.23
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 22 EYDVIIVGGGPSGLSAAIR 40
YD +++GGG GL++A R
Sbjct: 20 SYDYLVIGGGSGGLASARR 38
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 32.9 bits (75), Expect = 0.25
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59
+ +VG GP+G A L +K + + + EK
Sbjct: 9 ICVVGSGPAGFYTAQHL----LKHHSRAHVDIYEK 39
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 32.9 bits (74), Expect = 0.26
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64
EYDVI++G G + + + K+ +++ G
Sbjct: 6 EYDVIVLGTGLTECILSGIMSV------NGKKVLHMDRNPYYG 42
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 32.9 bits (76), Expect = 0.28
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 23 YDVIIVGGGPSGLSAAI 39
DVI++G GP+G +AA+
Sbjct: 15 RDVIVIGSGPAGYTAAL 31
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 32.8 bits (75), Expect = 0.28
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 17 PRESI--EYDVIIVGGGPSGLSAAIRLKQ 43
P++ +++GGG + +AA ++
Sbjct: 4 PQDKAPSHVPFLLIGGGTAAFAAARSIRA 32
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 32.9 bits (74), Expect = 0.30
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL 81
+YDVI++G G + + L K+ ++K G S + F+
Sbjct: 11 DYDVIVLGTGITECILSGLL------SVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ 64
Query: 82 FPKEK 86
P K
Sbjct: 65 NPISK 69
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 32.9 bits (76), Expect = 0.32
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 22 EYDVIIVGGGPSGLSAAIR 40
+D+I +GGG GL+ A +
Sbjct: 4 HFDLIAIGGGSGGLAVAEK 22
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 32.2 bits (74), Expect = 0.32
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 22 EYDVIIVGGGPSGLSAA 38
Y V+IVG G SG A
Sbjct: 3 AYQVLIVGAGFSGAETA 19
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 32.5 bits (75), Expect = 0.37
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 25 VIIVGGGPSGLSAAIRL 41
+ I+G G +GLSA + L
Sbjct: 2 IYIIGSGIAGLSAGVAL 18
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 32.5 bits (75), Expect = 0.40
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 22 EYDVIIVGGGPSGLSAAIR 40
YD +++GGG G+++A R
Sbjct: 11 HYDYLVIGGGSGGVASARR 29
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 32.5 bits (75), Expect = 0.42
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 19/77 (24%)
Query: 22 EYDVIIVGGGPSG------LSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDP 75
YD IIVG GP G LS A + K+ +LE+G G + P
Sbjct: 7 PYDYIIVGAGPGGIIAADRLSEAGK------------KVLLLERGGP-STKQTGGTYVAP 53
Query: 76 RSIFELFPKEKLNKLFN 92
+ K + LF
Sbjct: 54 WATSSGLTKFDIPGLFE 70
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2yau_A* 2x50_A* 2ve2_A*
Length = 490
Score = 32.1 bits (74), Expect = 0.53
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKK 48
S YD++++G G GL A L K+
Sbjct: 1 SRAYDLVVIGAGSGGLEAGWNAASLHKKR 29
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 31.7 bits (73), Expect = 0.59
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 24 DVIIVGGGPSGLSAAI 39
+ IVG GP+ +AAI
Sbjct: 10 RLCIVGSGPAAHTAAI 25
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET:
FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 31.8 bits (73), Expect = 0.62
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 19 ESIEYDVIIVGGGPSGLSAAI 39
+ V I+G GP+ +AAI
Sbjct: 19 SHVHNKVTIIGSGPAAHTAAI 39
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 31.8 bits (73), Expect = 0.66
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKK 48
S +D++++G G GL A L K+
Sbjct: 5 SKAFDLVVIGAGSGGLEAGWNAATLYGKR 33
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 31.7 bits (70), Expect = 0.67
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELF 82
++IVGGG +G AA L + I +L+ + I + ++ F F
Sbjct: 28 ILIVGGGTAGWMAASYLGKAL---QGTADITLLQAPDIPTLGVGEATIPNLQTAFFDF 82
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 31.7 bits (72), Expect = 0.74
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 1 MNYISSLNHSLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60
MN N L ++ E+ + ++G GP+ +S A L +L I + EK
Sbjct: 166 MNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYS-----DITIFEKQ 220
Query: 61 SELG 64
+G
Sbjct: 221 EYVG 224
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 31.6 bits (70), Expect = 0.83
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFP 83
V+IVGGG +G A LK + I + ++E G+ + R F+
Sbjct: 5 VVIVGGGTAGWMTASYLKAAF---DDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLG 60
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 30.5 bits (69), Expect = 0.84
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 26/95 (27%)
Query: 3 YISSLNHSLINKYGPR----------------ESIEYDVIIVGGGPSGLSAAIRLKQ--- 43
++ L H + G V+I+G G G A L+
Sbjct: 4 PLNRLGHKIYQHSGKWLQETAAEKLNQRDQLINPGHAQVLILGMGRIGTGAYDELRARYG 63
Query: 44 ---LAIKKNKEIKICVLEKGSELGAHILSGAIIDP 75
L I+ +E ++ G +++SG DP
Sbjct: 64 KISLGIEIREEA----AQQHRSEGRNVISGDATDP 94
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD;
2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB:
1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 31.3 bits (72), Expect = 0.86
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 24 DVIIVGGGPSGLSAAI 39
++I+G GP+G +AA+
Sbjct: 7 KLLILGSGPAGYTAAV 22
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 31.0 bits (71), Expect = 1.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 22 EYDVIIVGGGPSGLSAA 38
D+I++GGG +G A
Sbjct: 3 TKDLIVIGGGINGAGIA 19
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 30.4 bits (69), Expect = 2.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 22 EYDVIIVGGGPSGLSAA 38
E D++I+GGG +G A
Sbjct: 32 ELDLLIIGGGITGAGVA 48
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB:
1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Length = 150
Score = 29.3 bits (65), Expect = 2.1
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 503 ARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTC 536
CP + EK K + C C +C
Sbjct: 22 EYICPNDLMTLDKEKMKAYN--REPDMCWECYSC 53
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 30.4 bits (69), Expect = 2.1
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 22 EYDVIIVGGGPSGLSAA 38
+ D++++GGG +G A
Sbjct: 18 QLDLLVIGGGITGAGIA 34
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 29.5 bits (67), Expect = 2.2
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 16 GPRESIEYDVIIVGGGPSGLSAAIRLKQLAI 46
G + +D IIV P + A+ + QL
Sbjct: 137 GWQARAPFDAIIVTAAPPEIPTAL-MTQLDE 166
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 28.8 bits (65), Expect = 2.3
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 19 ESIEYDVIIVGGGPSGLSAAIRLKQ-----LAIKKNKEIKICVLEKGSELGAHILSGAII 73
E+ Y+ I++G +G+ L LA+ K+KE +E + G +
Sbjct: 3 ENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE----KIELLEDEGFDAVIADPT 58
Query: 74 DPRSIFEL 81
D L
Sbjct: 59 DESFYRSL 66
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 29.9 bits (68), Expect = 2.3
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 19/45 (42%)
Query: 22 EYDVIIVGGGPSG------LSAAIRLKQLAIKKNKEIKICVLEKG 60
YD +IVGGG SG LS + + VLE+G
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSEKYK-------------VLVLERG 57
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD;
1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A*
2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 29.9 bits (68), Expect = 2.3
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 17 PRESIEYDVIIVGGGPSGLSAAIRLKQ 43
+E+++ V+++G G + +S L+Q
Sbjct: 2 SQEALKAPVVVLGAGLASVSFVAELRQ 28
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 197
Score = 29.3 bits (66), Expect = 2.4
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 22 EYDVII--VGGGPSGLSAAIRL 41
YDV + GGG SG + AI L
Sbjct: 127 NYDVFVKAHGGGLSGQAQAISL 148
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 29.9 bits (68), Expect = 2.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 24 DVIIVGGGPSGLSAAIRLKQ 43
DV+IVG G G AAI L+Q
Sbjct: 11 DVVIVGAGHGGAQAAIALRQ 30
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 29.7 bits (67), Expect = 2.5
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 469 VSNINHDEDQPIHLILKNKKIPIHINFS--IYAGPEARYCPAGVYEFIIEKNKIQHLQIN 526
+ I ++ P +K + I+ + I ++YCP I + H +
Sbjct: 6 MERIEYEMHTPDPKADPDKLHFVQIDEAKCIGCDTCSQYCP---TAAIFGEMGEPHSIPH 62
Query: 527 AQNCIHCKTC 536
+ CI+C C
Sbjct: 63 IEACINCGQC 72
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA,
GIDA; tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 30.1 bits (69), Expect = 2.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 22 EYDVIIVGGGPSGLSAA 38
+DVII+GGG +G AA
Sbjct: 28 PFDVIIIGGGHAGTEAA 44
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 29.7 bits (68), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 17 PRESIEYDVIIVGGGPSGLSAA 38
PR S YDVI+VG G +G AA
Sbjct: 16 PRGSHMYDVIVVGAGHAGCEAA 37
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 29.8 bits (68), Expect = 2.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 25 VIIVGGGPSGLSAAIRL 41
V ++G GP+GL+AA L
Sbjct: 125 VGVIGAGPAGLAAAEEL 141
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 29.8 bits (68), Expect = 2.8
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 22 EYDVIIVGGGPSGLSAA 38
E+DV+++GGG +G+ AA
Sbjct: 27 EFDVVVIGGGHAGIEAA 43
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding,
cell cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A
{Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A*
2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A*
2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A*
2uag_A*
Length = 439
Score = 29.4 bits (67), Expect = 3.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 25 VIIVGGGPSGLSAAIRLKQL 44
V+I+G G +GLS
Sbjct: 8 VVIIGLGLTGLSCVDFFLAR 27
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 29.5 bits (67), Expect = 3.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 24 DVIIVGGGPSGLSAAIRLKQ 43
+V+IVG G +G+ A L+
Sbjct: 6 NVVIVGTGLAGVEVAFGLRA 25
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding,
rRNA-binding, metal-binding, zinc-finger, translation;
HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP:
d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I
1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I
1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I*
1n34_I ...
Length = 128
Score = 28.2 bits (64), Expect = 3.4
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 22 EYDVII--VGGGPSGLSAAIRL 41
+D I GGG SG AI+L
Sbjct: 58 RFDAYITVRGGGKSGQIDAIKL 79
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 2wwl_I
3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I
3r8o_I 4a2i_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I
2i2u_I ...
Length = 127
Score = 28.2 bits (64), Expect = 3.6
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 22 EYDVII--VGGGPSGLSAAIRL 41
+ D+ I GGG SG + AIR
Sbjct: 57 KLDLYITVKGGGISGQAGAIRH 78
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 29.5 bits (67), Expect = 3.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 25 VIIVGGGPSGLSAAIRLKQL 44
V+++G SG +AA L +L
Sbjct: 12 VLVLGLARSGEAAARLLAKL 31
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.8
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 14/35 (40%)
Query: 208 KQIIKKFNLDNK-K----D--PQTYSLGIKELWTI 235
KQ +KK L K D P +L IK T+
Sbjct: 19 KQALKK--LQASLKLYADDSAP---ALAIKA--TM 46
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 166
Score = 28.3 bits (62), Expect = 4.0
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 503 ARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTC 536
CP + E+ K + + C C +C
Sbjct: 21 MYICPNDLMILDPEEMKAFN--QEPEACWECYSC 52
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent
proteolytic, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 190
Score = 28.3 bits (63), Expect = 4.7
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKI-------QHLQINAQNCIHCKTC 536
L I + F + R GV EF+ ++ Q+L + + ++
Sbjct: 53 LSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESV 112
Query: 537 DIKDPT 542
+++ T
Sbjct: 113 NLQVAT 118
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 28.9 bits (65), Expect = 5.2
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 16/61 (26%)
Query: 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICV-------LEKGSELGAHILSGAIIDPR 76
+V+I+GGGP GL+A LK K+ + ELGA +IDP
Sbjct: 216 NVVILGGGPIGLAAVAILKHAGAS-----KVILSEPSEVRRNLAKELGADH----VIDPT 266
Query: 77 S 77
Sbjct: 267 K 267
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 28.4 bits (64), Expect = 5.6
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 16 GPRESIEYDVIIVGGGPSGLSAAIRLKQLAI 46
G E YD ++V L +QL
Sbjct: 128 GYEEEKPYDRVVVWATAPTLLCKP-YEQLKE 157
>2ha9_A UPF0210 protein SP0239; structural genomics, PSI-2, protei
structure initiative, midwest center for structural
genomic unknown function; 2.70A {Streptococcus
pneumoniae} SCOP: c.7.1.5
Length = 446
Score = 28.7 bits (64), Expect = 6.1
Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 27/109 (24%)
Query: 117 PICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSA-----------------SEILY 159
PI L + + K A+ +G+D GFSA L
Sbjct: 80 PISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALA 139
Query: 160 DSKNNVCG---IATNNFGINKEG------IIKKNFQLGMELYAKYTLFA 199
++ + VC I + GIN IIK+ L AK +FA
Sbjct: 140 ET-DKVCSSVNIGSTKSGINMTAVADMGRIIKETANLSDMGVAKLVVFA 187
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 27.9 bits (63), Expect = 6.8
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 23 YDVIIVGGGPSGLSAAIRLKQLAI 46
YD I + + ++QL
Sbjct: 147 YDRIYTTAAGPKIPEPL-IRQLKD 169
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase,
DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x
populus alba} PDB: 3n0g_A*
Length = 555
Score = 28.2 bits (62), Expect = 8.4
Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 8/151 (5%)
Query: 364 DSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMKKGLYIGMLIIGIDQILF 423
+ F + + L Y+ SF A L +AR F + K + I + L
Sbjct: 137 NGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLK----ELSEEKIGKELA 192
Query: 424 SGKFPFTLHNINSDYTYLEPASKHIPIKYPNPDNK---LTFDKLSSIYVSNINHDEDQPI 480
+ L T A I D L L + ++ + +
Sbjct: 193 E-QVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRET 251
Query: 481 HLILKNKKIPIHINFSIYAGPEARYCPAGVY 511
+ + ++F+ E+ Y GV
Sbjct: 252 SRWWRRVGLATKLHFARDRLIESFYWAVGVA 282
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein;
heterodimer, beta-alpha-barrels, oxidoreductase; HET:
B12; 1.90A {Carboxydothermus hydrogenoformans} PDB:
2ycl_B*
Length = 310
Score = 28.0 bits (62), Expect = 9.1
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 288 PFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDG 333
E + K + K+ ++ + G +T+T GG +LP F+G
Sbjct: 2 AVEVLKE-KWNSKVVEV-----TLGTGDKTVTLGGDSTLPFLTFEG 41
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 28.3 bits (63), Expect = 9.6
Identities = 9/67 (13%), Positives = 26/67 (38%)
Query: 160 DSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNK 219
K+ + + + F + +G + + + K+T+ +RG I + ++
Sbjct: 67 TRKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHR 126
Query: 220 KDPQTYS 226
+ +S
Sbjct: 127 SGEEAHS 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.424
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,805,537
Number of extensions: 549140
Number of successful extensions: 1618
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1571
Number of HSP's successfully gapped: 253
Length of query: 561
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 463
Effective length of database: 3,965,535
Effective search space: 1836042705
Effective search space used: 1836042705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)