Query psy14497
Match_columns 561
No_of_seqs 358 out of 3601
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 21:17:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415|consensus 100.0 3E-112 6E-117 803.4 41.0 546 13-561 67-621 (621)
2 PRK10015 oxidoreductase; Provi 100.0 5.8E-42 1.3E-46 354.4 37.9 374 21-423 4-393 (429)
3 COG0644 FixC Dehydrogenases (f 100.0 1.8E-40 3.9E-45 341.2 35.9 340 20-406 1-341 (396)
4 PRK10157 putative oxidoreducta 100.0 6.7E-40 1.5E-44 339.6 35.7 373 21-423 4-392 (428)
5 PLN00093 geranylgeranyl diphos 100.0 7.6E-31 1.6E-35 271.8 34.8 342 17-405 34-384 (450)
6 COG0654 UbiH 2-polyprenyl-6-me 100.0 1.8E-30 4E-35 266.6 32.1 340 21-405 1-350 (387)
7 PRK07045 putative monooxygenas 100.0 2.3E-30 5E-35 266.8 31.9 343 20-405 3-358 (388)
8 PRK08013 oxidoreductase; Provi 100.0 2.5E-30 5.5E-35 267.1 29.8 339 22-405 3-357 (400)
9 TIGR02023 BchP-ChlP geranylger 100.0 1.3E-29 2.9E-34 260.6 32.9 328 23-404 1-334 (388)
10 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.1E-29 2.3E-34 271.8 32.8 342 20-405 8-358 (538)
11 TIGR02028 ChlP geranylgeranyl 100.0 1.9E-29 4.2E-34 259.2 33.0 337 23-405 1-345 (398)
12 PRK08244 hypothetical protein; 100.0 1.5E-29 3.2E-34 268.4 32.9 325 21-389 1-329 (493)
13 PRK06617 2-octaprenyl-6-methox 100.0 7.2E-30 1.6E-34 261.3 27.7 330 23-406 2-339 (374)
14 TIGR02032 GG-red-SF geranylger 100.0 3.3E-29 7.1E-34 248.8 30.5 294 23-366 1-295 (295)
15 PF01494 FAD_binding_3: FAD bi 100.0 2E-30 4.3E-35 264.6 21.4 331 22-389 1-348 (356)
16 PRK07538 hypothetical protein; 100.0 4.2E-29 9.1E-34 259.3 31.6 336 23-400 1-361 (413)
17 PRK06185 hypothetical protein; 100.0 3.4E-29 7.3E-34 260.1 30.8 345 19-405 3-357 (407)
18 PRK07364 2-octaprenyl-6-methox 100.0 6.3E-29 1.4E-33 258.8 30.5 354 10-405 6-369 (415)
19 PRK08243 4-hydroxybenzoate 3-m 100.0 5.3E-29 1.2E-33 256.7 29.1 343 21-405 1-350 (392)
20 PRK05868 hypothetical protein; 100.0 7.1E-29 1.5E-33 253.1 29.5 339 23-406 2-353 (372)
21 PRK08294 phenol 2-monooxygenas 100.0 2E-28 4.2E-33 264.1 33.9 355 21-405 31-412 (634)
22 PRK08163 salicylate hydroxylas 100.0 8.8E-29 1.9E-33 256.1 29.9 342 21-406 3-357 (396)
23 PRK08773 2-octaprenyl-3-methyl 100.0 1.6E-28 3.5E-33 253.5 31.4 325 20-389 4-342 (392)
24 TIGR01988 Ubi-OHases Ubiquinon 100.0 1.3E-28 2.7E-33 254.2 30.6 339 24-405 1-351 (385)
25 PRK05714 2-octaprenyl-3-methyl 100.0 1.7E-28 3.6E-33 254.5 31.3 341 21-406 1-361 (405)
26 PRK06753 hypothetical protein; 100.0 1.1E-28 2.4E-33 253.2 29.5 333 23-406 1-339 (373)
27 PRK08132 FAD-dependent oxidore 100.0 2.6E-28 5.5E-33 261.9 33.4 347 18-404 19-370 (547)
28 PRK06184 hypothetical protein; 100.0 2.3E-28 5E-33 259.7 31.4 339 22-401 3-348 (502)
29 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.9E-28 4E-33 252.5 29.6 337 24-405 1-348 (382)
30 TIGR01989 COQ6 Ubiquinone bios 100.0 3E-28 6.5E-33 254.1 31.1 342 23-405 1-408 (437)
31 PRK09126 hypothetical protein; 100.0 1.8E-28 3.9E-33 253.4 28.9 340 20-405 1-355 (392)
32 PF05187 ETF_QO: Electron tran 100.0 3.8E-32 8.3E-37 215.9 1.1 109 408-516 1-109 (110)
33 PRK07588 hypothetical protein; 100.0 3.1E-28 6.8E-33 251.2 30.3 338 23-406 1-350 (391)
34 PRK07333 2-octaprenyl-6-methox 100.0 5E-28 1.1E-32 251.1 31.5 343 22-405 1-355 (403)
35 PRK08850 2-octaprenyl-6-methox 100.0 6.7E-28 1.4E-32 249.8 31.9 338 22-405 4-357 (405)
36 PRK07190 hypothetical protein; 100.0 5E-28 1.1E-32 253.9 29.8 328 20-401 3-343 (487)
37 PRK06475 salicylate hydroxylas 100.0 1.2E-27 2.6E-32 247.4 30.8 334 22-398 2-353 (400)
38 PRK06834 hypothetical protein; 100.0 1.8E-27 3.8E-32 250.0 32.5 317 21-389 2-322 (488)
39 PRK06996 hypothetical protein; 100.0 2.1E-27 4.5E-32 245.2 31.6 337 18-406 7-361 (398)
40 PRK06126 hypothetical protein; 100.0 1.9E-27 4.2E-32 255.4 30.7 338 19-400 4-370 (545)
41 PRK07608 ubiquinone biosynthes 100.0 2.6E-27 5.7E-32 244.4 30.3 340 20-405 3-354 (388)
42 PRK07494 2-octaprenyl-6-methox 100.0 4.8E-28 1E-32 249.8 24.2 341 19-405 4-352 (388)
43 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 2.2E-27 4.7E-32 243.9 28.5 342 21-405 1-350 (390)
44 TIGR03219 salicylate_mono sali 100.0 2.2E-27 4.7E-32 246.6 28.4 341 23-405 1-373 (414)
45 PRK06847 hypothetical protein; 100.0 4.6E-27 1E-31 241.5 29.7 335 22-405 4-351 (375)
46 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1E-26 2.2E-31 240.2 31.7 338 20-405 3-356 (391)
47 PRK08849 2-octaprenyl-3-methyl 100.0 4.5E-27 9.8E-32 241.7 28.9 334 22-405 3-349 (384)
48 PTZ00367 squalene epoxidase; P 100.0 6.4E-27 1.4E-31 247.2 30.2 354 18-407 29-423 (567)
49 PRK05732 2-octaprenyl-6-methox 100.0 1.9E-26 4E-31 238.7 30.9 342 21-406 2-358 (395)
50 PLN02985 squalene monooxygenas 100.0 3.9E-26 8.4E-31 240.4 33.6 344 18-405 39-401 (514)
51 PRK07236 hypothetical protein; 100.0 6.2E-27 1.3E-31 240.9 26.5 318 20-389 4-360 (386)
52 PLN02927 antheraxanthin epoxid 100.0 6.7E-26 1.5E-30 240.2 29.3 347 19-405 78-446 (668)
53 PRK11445 putative oxidoreducta 99.9 1.6E-24 3.4E-29 219.7 27.7 310 22-389 1-316 (351)
54 KOG2614|consensus 99.9 5.5E-25 1.2E-29 213.0 12.9 42 330-371 286-327 (420)
55 PLN02697 lycopene epsilon cycl 99.9 1.3E-22 2.7E-27 212.2 30.2 312 20-389 106-439 (529)
56 TIGR01790 carotene-cycl lycope 99.9 4E-22 8.6E-27 205.7 31.7 307 24-389 1-318 (388)
57 PRK08255 salicylyl-CoA 5-hydro 99.9 1.3E-23 2.8E-28 232.1 19.9 324 24-405 2-339 (765)
58 COG2440 FixX Ferredoxin-like p 99.9 1.6E-25 3.5E-30 169.4 3.1 80 473-560 17-98 (99)
59 PLN02463 lycopene beta cyclase 99.9 3.9E-21 8.4E-26 198.3 30.8 299 20-375 26-337 (447)
60 PF04820 Trp_halogenase: Trypt 99.9 1.5E-22 3.2E-27 210.3 19.3 222 124-389 147-370 (454)
61 KOG1298|consensus 99.8 8.9E-19 1.9E-23 166.6 22.2 302 18-368 41-362 (509)
62 PRK15449 ferredoxin-like prote 99.8 2E-21 4.4E-26 150.6 2.5 78 473-560 15-94 (95)
63 TIGR01789 lycopene_cycl lycope 99.8 3.2E-18 6.8E-23 173.9 24.6 279 24-367 1-286 (370)
64 PF05834 Lycopene_cycl: Lycope 99.8 8E-18 1.7E-22 171.8 24.6 281 24-368 1-290 (374)
65 KOG3855|consensus 99.8 5.3E-17 1.2E-21 156.4 21.1 334 20-388 34-429 (481)
66 PRK04176 ribulose-1,5-biphosph 99.7 1.1E-16 2.5E-21 153.5 17.1 164 18-215 21-184 (257)
67 TIGR00292 thiazole biosynthesi 99.7 2.9E-16 6.4E-21 150.0 16.3 166 18-217 17-183 (254)
68 PF01946 Thi4: Thi4 family; PD 99.7 1.5E-16 3.2E-21 142.3 11.2 162 19-214 14-175 (230)
69 PRK09853 putative selenate red 99.7 7.3E-16 1.6E-20 169.6 19.0 41 20-66 537-577 (1019)
70 PRK12771 putative glutamate sy 99.7 7.1E-17 1.5E-21 173.6 11.0 61 485-548 501-561 (564)
71 COG1635 THI4 Ribulose 1,5-bisp 99.7 7.5E-16 1.6E-20 136.4 14.8 156 19-213 27-187 (262)
72 TIGR03315 Se_ygfK putative sel 99.7 2.3E-15 4.9E-20 166.6 17.6 40 21-66 536-575 (1012)
73 COG2081 Predicted flavoprotein 99.6 1.6E-14 3.5E-19 140.5 15.3 168 20-218 1-188 (408)
74 PF01266 DAO: FAD dependent ox 99.5 8.7E-12 1.9E-16 127.1 23.6 75 123-217 139-213 (358)
75 PRK00711 D-amino acid dehydrog 99.5 9.9E-12 2.1E-16 129.6 23.2 73 126-218 196-268 (416)
76 TIGR01373 soxB sarcosine oxida 99.4 7.9E-11 1.7E-15 122.4 27.9 64 126-205 178-241 (407)
77 COG1148 HdrA Heterodisulfide r 99.4 1.9E-11 4.1E-16 120.6 20.4 41 20-66 122-162 (622)
78 PF03486 HI0933_like: HI0933-l 99.4 3.3E-13 7.1E-18 137.5 8.0 153 23-205 1-167 (409)
79 PRK12409 D-amino acid dehydrog 99.4 2.4E-10 5.2E-15 118.9 26.6 67 127-205 193-259 (410)
80 PRK01747 mnmC bifunctional tRN 99.4 3.1E-11 6.7E-16 132.7 20.3 63 125-205 402-464 (662)
81 PRK12814 putative NADPH-depend 99.4 4.7E-12 1E-16 138.1 13.6 41 21-67 192-232 (652)
82 TIGR03329 Phn_aa_oxid putative 99.4 6.4E-11 1.4E-15 124.7 21.1 64 123-205 175-238 (460)
83 TIGR01377 soxA_mon sarcosine o 99.3 3.3E-10 7.1E-15 116.7 25.3 65 123-205 137-201 (380)
84 PRK11259 solA N-methyltryptoph 99.3 1.6E-10 3.4E-15 118.9 22.8 61 127-205 145-205 (376)
85 PLN02661 Putative thiazole syn 99.3 2.1E-11 4.5E-16 119.7 15.2 157 19-209 89-249 (357)
86 COG0579 Predicted dehydrogenas 99.3 5.6E-11 1.2E-15 120.0 17.0 176 20-218 1-222 (429)
87 PRK11728 hydroxyglutarate oxid 99.3 2.8E-10 6.1E-15 117.6 20.7 163 21-205 1-205 (393)
88 PRK11101 glpA sn-glycerol-3-ph 99.3 3.3E-09 7.3E-14 113.6 28.9 69 126-205 144-212 (546)
89 COG0665 DadA Glycine/D-amino a 99.3 1.1E-09 2.3E-14 113.2 23.6 65 123-205 148-213 (387)
90 PF13738 Pyr_redox_3: Pyridine 99.2 2.5E-11 5.4E-16 113.3 9.4 138 26-205 1-139 (203)
91 PF12831 FAD_oxidored: FAD dep 99.2 3.9E-12 8.5E-17 132.2 3.7 142 24-203 1-149 (428)
92 PRK05192 tRNA uridine 5-carbox 99.2 7E-11 1.5E-15 124.2 12.1 149 20-204 2-157 (618)
93 PRK12266 glpD glycerol-3-phosp 99.2 1.3E-08 2.9E-13 108.1 28.6 67 127-205 151-217 (508)
94 TIGR03364 HpnW_proposed FAD de 99.2 1.7E-09 3.7E-14 110.7 21.1 155 23-205 1-198 (365)
95 PRK13369 glycerol-3-phosphate 99.2 2.4E-08 5.2E-13 106.2 29.2 67 126-205 150-216 (502)
96 TIGR01813 flavo_cyto_c flavocy 99.2 4.3E-10 9.3E-15 118.0 15.4 165 24-206 1-194 (439)
97 PRK06481 fumarate reductase fl 99.2 4.9E-10 1.1E-14 119.0 15.9 167 20-206 59-253 (506)
98 PRK07804 L-aspartate oxidase; 99.2 2.5E-10 5.5E-15 122.1 13.7 174 18-206 12-212 (541)
99 PLN02464 glycerol-3-phosphate 99.2 1.5E-08 3.3E-13 109.9 27.4 70 126-205 227-297 (627)
100 PF08491 SE: Squalene epoxidas 99.2 1.3E-09 2.8E-14 102.8 16.5 155 193-369 2-167 (276)
101 PRK07121 hypothetical protein; 99.2 5E-10 1.1E-14 119.0 15.5 170 18-206 16-241 (492)
102 PTZ00383 malate:quinone oxidor 99.2 1E-09 2.3E-14 114.9 17.4 63 126-205 206-274 (497)
103 COG0578 GlpA Glycerol-3-phosph 99.2 1.9E-08 4.2E-13 103.8 26.0 168 20-205 10-226 (532)
104 PF01134 GIDA: Glucose inhibit 99.2 2.1E-10 4.6E-15 114.4 11.4 144 24-202 1-150 (392)
105 PRK07573 sdhA succinate dehydr 99.1 5.1E-10 1.1E-14 121.6 15.0 169 19-206 32-234 (640)
106 PRK08274 tricarballylate dehyd 99.1 6.1E-10 1.3E-14 117.7 14.8 170 21-209 3-197 (466)
107 PRK06452 sdhA succinate dehydr 99.1 5.6E-10 1.2E-14 120.0 14.5 170 19-206 2-200 (566)
108 PLN02172 flavin-containing mon 99.1 7.3E-10 1.6E-14 115.6 14.9 161 21-205 9-174 (461)
109 TIGR01320 mal_quin_oxido malat 99.1 2E-09 4.4E-14 113.1 18.1 82 123-218 170-251 (483)
110 PRK08275 putative oxidoreducta 99.1 4.4E-10 9.5E-15 120.8 13.2 173 18-206 5-202 (554)
111 PTZ00139 Succinate dehydrogena 99.1 1.3E-09 2.9E-14 118.0 16.0 170 19-205 26-230 (617)
112 PRK07057 sdhA succinate dehydr 99.1 8.3E-10 1.8E-14 119.2 14.2 172 18-206 8-213 (591)
113 PLN00128 Succinate dehydrogena 99.1 6.6E-10 1.4E-14 120.3 12.9 169 21-206 49-252 (635)
114 PRK08958 sdhA succinate dehydr 99.1 6.3E-10 1.4E-14 119.9 12.6 169 21-206 6-208 (588)
115 PF14697 Fer4_21: 4Fe-4S diclu 99.1 2.7E-11 5.9E-16 87.0 1.4 57 484-547 2-59 (59)
116 KOG1399|consensus 99.1 1.3E-09 2.8E-14 111.6 14.0 145 20-203 4-152 (448)
117 PF00890 FAD_binding_2: FAD bi 99.1 6.2E-10 1.3E-14 116.1 12.0 168 24-209 1-209 (417)
118 PF00743 FMO-like: Flavin-bind 99.1 1.3E-09 2.8E-14 115.3 14.0 145 23-205 2-151 (531)
119 PRK09078 sdhA succinate dehydr 99.1 8.8E-10 1.9E-14 119.1 13.1 170 19-205 9-213 (598)
120 PRK09231 fumarate reductase fl 99.1 1E-09 2.2E-14 118.3 12.4 172 19-206 1-198 (582)
121 TIGR02730 carot_isom carotene 99.1 4.5E-08 9.8E-13 104.2 24.9 62 130-207 228-289 (493)
122 TIGR01292 TRX_reduct thioredox 99.1 2E-09 4.2E-14 107.0 13.4 113 23-205 1-113 (300)
123 PRK12845 3-ketosteroid-delta-1 99.0 3.5E-09 7.5E-14 113.4 15.8 69 132-214 218-287 (564)
124 PRK05257 malate:quinone oxidor 99.0 7.6E-09 1.6E-13 108.9 18.1 80 124-217 176-256 (494)
125 PRK12839 hypothetical protein; 99.0 3.2E-09 6.9E-14 114.0 15.5 67 129-206 212-278 (572)
126 TIGR01176 fum_red_Fp fumarate 99.0 1.8E-09 3.8E-14 116.2 13.5 170 21-206 2-197 (580)
127 PRK05945 sdhA succinate dehydr 99.0 1.2E-09 2.5E-14 118.0 12.1 170 21-206 2-199 (575)
128 PRK06069 sdhA succinate dehydr 99.0 1.3E-09 2.9E-14 117.7 12.5 171 18-206 1-202 (577)
129 COG0492 TrxB Thioredoxin reduc 99.0 2.4E-09 5.1E-14 104.9 12.9 114 21-205 2-116 (305)
130 PRK06263 sdhA succinate dehydr 99.0 1.5E-09 3.3E-14 116.5 12.4 167 19-205 4-198 (543)
131 COG1144 Pyruvate:ferredoxin ox 99.0 1.1E-10 2.3E-15 88.0 2.4 56 484-549 31-87 (91)
132 PRK06854 adenylylsulfate reduc 99.0 3.1E-09 6.7E-14 115.1 14.7 168 19-205 8-196 (608)
133 TIGR00275 flavoprotein, HI0933 99.0 1.9E-09 4.1E-14 111.2 12.3 148 26-205 1-161 (400)
134 COG2072 TrkA Predicted flavopr 99.0 2.6E-09 5.7E-14 110.9 13.4 138 19-205 5-145 (443)
135 PRK08641 sdhA succinate dehydr 99.0 4.9E-09 1.1E-13 113.2 15.8 168 22-206 3-202 (589)
136 PRK08401 L-aspartate oxidase; 99.0 2.8E-09 6.1E-14 112.1 13.7 156 23-206 2-177 (466)
137 PRK12835 3-ketosteroid-delta-1 99.0 5.3E-09 1.1E-13 112.7 15.7 62 133-206 215-277 (584)
138 PRK06175 L-aspartate oxidase; 99.0 2E-09 4.4E-14 111.9 12.2 164 21-205 3-190 (433)
139 TIGR01812 sdhA_frdA_Gneg succi 99.0 3.8E-09 8.2E-14 114.2 14.7 165 24-206 1-193 (566)
140 PRK13339 malate:quinone oxidor 99.0 1.2E-08 2.6E-13 106.6 17.7 81 124-218 177-258 (497)
141 PLN02815 L-aspartate oxidase 99.0 3.6E-09 7.8E-14 113.6 14.2 171 18-206 25-224 (594)
142 PRK07803 sdhA succinate dehydr 99.0 3.6E-09 7.8E-14 114.9 14.4 169 19-205 5-214 (626)
143 PRK12834 putative FAD-binding 99.0 7.8E-09 1.7E-13 111.2 16.4 180 20-207 2-230 (549)
144 TIGR00136 gidA glucose-inhibit 99.0 2.5E-09 5.5E-14 112.4 12.2 147 23-204 1-154 (617)
145 PRK12837 3-ketosteroid-delta-1 99.0 1E-08 2.2E-13 109.2 16.4 41 20-67 5-45 (513)
146 PRK15317 alkyl hydroperoxide r 99.0 7.2E-09 1.6E-13 110.6 14.9 115 20-205 209-323 (517)
147 PRK06134 putative FAD-binding 99.0 7.9E-09 1.7E-13 111.6 15.2 64 130-206 216-280 (581)
148 TIGR00551 nadB L-aspartate oxi 99.0 3.3E-09 7.1E-14 112.4 12.0 164 22-206 2-191 (488)
149 PRK12842 putative succinate de 99.0 8.4E-09 1.8E-13 111.4 14.8 63 131-206 214-277 (574)
150 PRK07233 hypothetical protein; 99.0 2.8E-07 6.1E-12 96.7 25.9 38 24-67 1-38 (434)
151 TIGR02734 crtI_fam phytoene de 99.0 2.8E-07 6.1E-12 98.5 25.9 60 131-206 219-278 (502)
152 PRK12843 putative FAD-binding 98.9 1.5E-08 3.2E-13 109.4 15.8 69 132-214 222-291 (578)
153 PRK08205 sdhA succinate dehydr 98.9 6.6E-09 1.4E-13 112.3 12.6 66 131-206 140-208 (583)
154 COG1143 NuoI Formate hydrogenl 98.9 3.6E-10 7.8E-15 99.3 2.3 57 485-547 52-114 (172)
155 PRK08626 fumarate reductase fl 98.9 5.1E-09 1.1E-13 114.1 11.5 65 131-206 158-222 (657)
156 PLN02612 phytoene desaturase 98.9 6.4E-07 1.4E-11 96.4 27.5 56 132-202 309-364 (567)
157 PF06039 Mqo: Malate:quinone o 98.9 5.1E-08 1.1E-12 97.6 17.1 82 125-220 175-257 (488)
158 PRK13977 myosin-cross-reactive 98.9 2E-08 4.2E-13 105.0 14.4 53 13-67 13-65 (576)
159 PRK12844 3-ketosteroid-delta-1 98.9 1.7E-08 3.8E-13 108.3 14.6 63 131-206 208-271 (557)
160 TIGR01424 gluta_reduc_2 glutat 98.9 6.6E-09 1.4E-13 109.0 11.0 50 22-78 2-51 (446)
161 COG1142 HycB Fe-S-cluster-cont 98.9 6.1E-10 1.3E-14 96.3 2.7 54 488-550 51-104 (165)
162 TIGR03143 AhpF_homolog putativ 98.9 1.9E-08 4.2E-13 108.1 14.6 112 22-205 4-115 (555)
163 TIGR03140 AhpF alkyl hydropero 98.9 1.1E-08 2.4E-13 109.0 12.4 114 20-204 210-323 (515)
164 PRK06416 dihydrolipoamide dehy 98.9 1.8E-08 4E-13 106.4 13.9 41 21-68 3-43 (462)
165 PRK12779 putative bifunctional 98.9 4.8E-09 1E-13 118.0 9.8 41 21-67 305-345 (944)
166 PRK07395 L-aspartate oxidase; 98.9 1.7E-08 3.6E-13 108.0 12.9 166 20-205 7-198 (553)
167 TIGR01811 sdhA_Bsu succinate d 98.9 2.5E-08 5.4E-13 107.9 13.6 165 25-206 1-198 (603)
168 PRK05249 soluble pyridine nucl 98.8 3.2E-08 7E-13 104.5 13.6 52 20-77 3-54 (461)
169 COG1146 Ferredoxin [Energy pro 98.8 2.6E-09 5.7E-14 79.8 3.8 62 484-552 4-65 (68)
170 TIGR02061 aprA adenosine phosp 98.8 2.3E-08 5E-13 107.4 12.3 165 24-205 1-192 (614)
171 KOG2820|consensus 98.8 5.9E-08 1.3E-12 92.3 13.4 164 19-203 4-211 (399)
172 PRK09077 L-aspartate oxidase; 98.8 3.6E-08 7.7E-13 105.6 13.7 169 20-206 6-209 (536)
173 TIGR01421 gluta_reduc_1 glutat 98.8 3.3E-08 7.1E-13 103.7 13.2 45 22-73 2-46 (450)
174 PRK06467 dihydrolipoamide dehy 98.8 4E-08 8.7E-13 103.7 13.9 51 21-77 3-53 (471)
175 PRK07843 3-ketosteroid-delta-1 98.8 7.1E-08 1.5E-12 103.7 15.7 62 132-206 209-271 (557)
176 PTZ00306 NADH-dependent fumara 98.8 5.9E-08 1.3E-12 112.6 16.0 173 19-206 406-622 (1167)
177 PRK08071 L-aspartate oxidase; 98.8 4.2E-08 9.2E-13 104.3 13.5 163 22-205 3-191 (510)
178 PRK05976 dihydrolipoamide dehy 98.8 6.7E-08 1.5E-12 102.3 14.4 50 21-77 3-52 (472)
179 PRK14727 putative mercuric red 98.8 8.3E-08 1.8E-12 101.6 14.9 60 12-77 6-65 (479)
180 PRK06116 glutathione reductase 98.8 4.6E-08 9.9E-13 103.0 11.8 39 22-67 4-42 (450)
181 KOG2844|consensus 98.8 1.8E-07 3.9E-12 96.4 15.3 81 122-222 178-258 (856)
182 COG3380 Predicted NAD/FAD-depe 98.8 1.8E-08 4E-13 92.8 7.5 39 23-67 2-40 (331)
183 PRK06370 mercuric reductase; V 98.8 7.6E-08 1.6E-12 101.6 13.4 51 21-78 4-54 (463)
184 PF13247 Fer4_11: 4Fe-4S diclu 98.8 1.9E-09 4.2E-14 85.9 0.8 59 487-552 6-64 (98)
185 COG2509 Uncharacterized FAD-de 98.7 2.5E-07 5.5E-12 91.8 15.4 88 130-237 172-260 (486)
186 TIGR02485 CobZ_N-term precorri 98.7 1.4E-07 2.9E-12 98.8 14.5 160 27-209 1-188 (432)
187 PRK12831 putative oxidoreducta 98.7 2.4E-08 5.2E-13 104.8 8.7 42 19-66 137-178 (464)
188 PRK07251 pyridine nucleotide-d 98.7 8.5E-08 1.8E-12 100.6 12.7 40 21-66 2-42 (438)
189 PRK07512 L-aspartate oxidase; 98.7 3.8E-08 8.2E-13 104.7 10.1 166 18-205 5-198 (513)
190 PRK06115 dihydrolipoamide dehy 98.7 9.2E-08 2E-12 100.9 12.9 51 21-77 2-52 (466)
191 PF13454 NAD_binding_9: FAD-NA 98.7 1E-07 2.2E-12 84.6 11.0 36 26-62 1-36 (156)
192 PTZ00058 glutathione reductase 98.7 1.2E-07 2.6E-12 101.2 13.5 53 18-77 44-96 (561)
193 PRK09897 hypothetical protein; 98.7 1.6E-07 3.4E-12 99.2 14.1 40 23-66 2-41 (534)
194 PRK14694 putative mercuric red 98.7 2.1E-07 4.5E-12 98.4 15.2 51 19-76 3-53 (468)
195 KOG2852|consensus 98.7 5.3E-07 1.2E-11 83.9 15.7 170 18-205 6-209 (380)
196 PRK08010 pyridine nucleotide-d 98.7 9.3E-08 2E-12 100.4 12.3 41 21-67 2-43 (441)
197 PRK05335 tRNA (uracil-5-)-meth 98.7 7.8E-08 1.7E-12 97.2 10.9 37 22-64 2-38 (436)
198 PRK06327 dihydrolipoamide dehy 98.7 1.4E-07 3.1E-12 99.8 13.4 33 21-59 3-35 (475)
199 PRK10262 thioredoxin reductase 98.7 1.5E-07 3.3E-12 94.4 12.8 115 20-205 4-118 (321)
200 KOG2853|consensus 98.7 3E-06 6.6E-11 80.7 19.8 41 21-63 85-125 (509)
201 PF13450 NAD_binding_8: NAD(P) 98.7 2.1E-08 4.6E-13 74.8 4.5 35 27-67 1-35 (68)
202 PLN02507 glutathione reductase 98.7 2.6E-07 5.7E-12 98.0 13.8 34 20-59 23-56 (499)
203 PF00070 Pyr_redox: Pyridine n 98.7 2.9E-07 6.3E-12 71.5 10.4 78 24-171 1-78 (80)
204 PF07992 Pyr_redox_2: Pyridine 98.6 4.2E-08 9E-13 91.3 5.9 33 24-62 1-33 (201)
205 PRK09754 phenylpropionate diox 98.6 1.6E-06 3.6E-11 89.5 18.3 98 23-205 145-242 (396)
206 PRK12778 putative bifunctional 98.6 8.2E-08 1.8E-12 107.2 9.2 41 20-66 429-469 (752)
207 PRK12775 putative trifunctiona 98.6 6.9E-08 1.5E-12 109.8 8.6 40 21-66 429-468 (1006)
208 PRK13800 putative oxidoreducta 98.6 1.6E-07 3.5E-12 106.5 11.5 171 18-206 9-207 (897)
209 KOG2404|consensus 98.6 1.8E-07 3.9E-12 88.2 9.7 172 24-218 11-220 (477)
210 TIGR01316 gltA glutamate synth 98.6 9.3E-08 2E-12 100.2 8.6 41 20-66 131-171 (449)
211 PRK12769 putative oxidoreducta 98.6 8.3E-08 1.8E-12 105.4 8.6 40 21-66 326-365 (654)
212 PLN02852 ferredoxin-NADP+ redu 98.6 1.8E-07 3.8E-12 97.6 9.7 47 18-68 22-68 (491)
213 PRK11749 dihydropyrimidine deh 98.6 1.6E-07 3.4E-12 99.0 9.4 40 20-65 138-177 (457)
214 PLN02546 glutathione reductase 98.6 2.4E-07 5.3E-12 98.9 10.8 33 21-59 78-110 (558)
215 PRK13748 putative mercuric red 98.6 7.3E-07 1.6E-11 96.7 14.5 49 21-76 97-145 (561)
216 TIGR02053 MerA mercuric reduct 98.6 2.1E-07 4.4E-12 98.4 10.0 48 23-77 1-48 (463)
217 COG1249 Lpd Pyruvate/2-oxoglut 98.6 3E-07 6.5E-12 94.9 10.8 54 20-79 2-55 (454)
218 TIGR01318 gltD_gamma_fam gluta 98.6 1.5E-07 3.3E-12 99.0 8.8 40 21-66 140-179 (467)
219 TIGR01350 lipoamide_DH dihydro 98.6 3.1E-07 6.8E-12 97.0 11.1 41 22-69 1-41 (461)
220 PRK12810 gltD glutamate syntha 98.6 1.8E-07 3.9E-12 98.7 9.0 41 20-66 141-181 (471)
221 COG1053 SdhA Succinate dehydro 98.6 5.4E-07 1.2E-11 95.6 12.2 171 19-205 3-203 (562)
222 TIGR01372 soxA sarcosine oxida 98.5 8.5E-07 1.8E-11 101.6 14.4 40 21-66 162-201 (985)
223 CHL00065 psaC photosystem I su 98.5 2.2E-08 4.7E-13 77.9 1.0 60 484-549 5-67 (81)
224 KOG3256|consensus 98.5 2.7E-08 5.8E-13 83.3 1.4 56 486-547 109-169 (212)
225 KOG2960|consensus 98.5 1.6E-07 3.6E-12 83.1 6.3 152 22-206 76-236 (328)
226 PRK06292 dihydrolipoamide dehy 98.5 2.6E-07 5.7E-12 97.6 8.5 41 21-68 2-42 (460)
227 PTZ00052 thioredoxin reductase 98.5 4E-07 8.7E-12 96.6 9.9 33 22-60 5-37 (499)
228 COG0493 GltD NADPH-dependent g 98.5 2.2E-07 4.7E-12 96.0 7.5 76 21-155 122-197 (457)
229 PRK08348 NADH-plastoquinone ox 98.5 1E-07 2.2E-12 80.2 4.0 57 484-549 38-94 (120)
230 KOG3923|consensus 98.5 6.5E-06 1.4E-10 77.3 16.1 293 21-371 2-338 (342)
231 TIGR02936 fdxN_nitrog ferredox 98.5 4.4E-08 9.4E-13 78.3 1.6 60 483-548 16-90 (91)
232 KOG2665|consensus 98.5 6.7E-07 1.5E-11 84.2 9.3 173 20-209 46-262 (453)
233 TIGR00137 gid_trmFO tRNA:m(5)U 98.5 7.3E-07 1.6E-11 90.8 10.4 37 23-65 1-37 (433)
234 PRK09564 coenzyme A disulfide 98.5 1E-06 2.3E-11 92.6 11.8 36 24-63 2-37 (444)
235 PRK12809 putative oxidoreducta 98.5 4E-07 8.6E-12 99.6 8.3 40 21-66 309-348 (639)
236 PRK09624 porD pyuvate ferredox 98.4 8.1E-08 1.8E-12 78.2 2.1 55 484-548 47-101 (105)
237 PRK04965 NADH:flavorubredoxin 98.4 1.1E-06 2.3E-11 90.4 10.8 38 21-62 1-38 (377)
238 PF13187 Fer4_9: 4Fe-4S diclus 98.4 3.8E-08 8.2E-13 70.3 0.1 47 499-545 5-55 (55)
239 PF13434 K_oxygenase: L-lysine 98.4 2.7E-07 5.9E-12 92.5 6.0 153 22-203 2-158 (341)
240 PLN00071 photosystem I subunit 98.4 1.1E-07 2.3E-12 74.0 1.9 63 485-553 6-71 (81)
241 TIGR01317 GOGAT_sm_gam glutama 98.4 7.5E-07 1.6E-11 94.2 9.0 39 21-65 142-180 (485)
242 TIGR02060 aprB adenosine phosp 98.4 1.1E-07 2.4E-12 80.3 2.1 56 485-548 5-65 (132)
243 KOG0042|consensus 98.4 3.3E-07 7.1E-12 92.3 5.7 70 131-210 224-293 (680)
244 PRK07818 dihydrolipoamide dehy 98.4 2.8E-06 6E-11 89.9 13.1 40 22-68 4-43 (466)
245 PF13237 Fer4_10: 4Fe-4S diclu 98.4 1.2E-07 2.6E-12 66.8 1.8 49 484-541 3-52 (52)
246 KOG0029|consensus 98.4 3.6E-07 7.7E-12 95.6 5.8 45 18-68 11-55 (501)
247 TIGR01438 TGR thioredoxin and 98.4 4.1E-06 8.8E-11 88.6 13.9 33 22-60 2-34 (484)
248 TIGR01423 trypano_reduc trypan 98.4 2E-06 4.3E-11 90.8 11.3 53 21-79 2-63 (486)
249 PRK09626 oorD 2-oxoglutarate-a 98.4 2.4E-07 5.2E-12 75.5 3.4 62 481-548 9-73 (103)
250 COG0437 HybA Fe-S-cluster-cont 98.4 2.6E-07 5.6E-12 83.1 3.8 56 487-549 66-121 (203)
251 PRK09625 porD pyruvate flavodo 98.4 1.1E-07 2.5E-12 81.0 1.5 56 484-549 55-110 (133)
252 PRK07845 flavoprotein disulfid 98.4 1.9E-06 4.2E-11 90.9 10.9 38 23-67 2-39 (466)
253 TIGR02179 PorD_KorD 2-oxoacid: 98.4 3.6E-07 7.9E-12 70.5 3.9 55 484-548 21-75 (78)
254 PRK13512 coenzyme A disulfide 98.4 2.9E-06 6.3E-11 88.8 12.0 37 24-64 3-39 (438)
255 PTZ00363 rab-GDP dissociation 98.4 5.2E-06 1.1E-10 86.0 13.6 58 130-202 231-288 (443)
256 PRK02651 photosystem I subunit 98.4 2.2E-07 4.8E-12 72.3 2.6 67 486-558 7-81 (81)
257 COG1233 Phytoene dehydrogenase 98.4 4.2E-07 9E-12 96.2 5.4 41 21-67 2-42 (487)
258 TIGR03048 PS_I_psaC photosyste 98.3 1.7E-07 3.6E-12 72.7 1.6 63 484-552 4-69 (80)
259 PRK06912 acoL dihydrolipoamide 98.3 2.3E-06 4.9E-11 90.3 10.7 48 24-78 2-49 (458)
260 COG1245 Predicted ATPase, RNas 98.3 2.4E-07 5.3E-12 91.6 3.1 65 480-551 3-74 (591)
261 PRK09623 vorD 2-ketoisovalerat 98.3 2.1E-07 4.7E-12 75.9 2.3 55 484-548 47-101 (105)
262 TIGR01316 gltA glutamate synth 98.3 1.9E-05 4.1E-10 82.9 17.4 110 22-203 272-386 (449)
263 PRK08222 hydrogenase 4 subunit 98.3 3.9E-07 8.5E-12 82.2 4.1 58 485-548 35-93 (181)
264 PF12838 Fer4_7: 4Fe-4S diclus 98.3 4.9E-08 1.1E-12 68.7 -1.4 46 499-544 5-52 (52)
265 KOG1335|consensus 98.3 4E-06 8.8E-11 81.2 11.0 47 21-73 38-84 (506)
266 COG1231 Monoamine oxidase [Ami 98.3 5.9E-06 1.3E-10 82.8 12.6 42 20-67 5-46 (450)
267 PRK12770 putative glutamate sy 98.3 2.2E-06 4.7E-11 87.1 9.9 38 22-65 18-55 (352)
268 TIGR03478 DMSO_red_II_bet DMSO 98.3 4.4E-07 9.5E-12 86.8 4.3 60 485-551 126-185 (321)
269 TIGR01660 narH nitrate reducta 98.3 4.8E-07 1E-11 90.0 4.4 61 483-550 176-236 (492)
270 PRK09754 phenylpropionate diox 98.3 6.3E-06 1.4E-10 85.2 13.0 38 22-63 3-40 (396)
271 TIGR03378 glycerol3P_GlpB glyc 98.3 1E-05 2.2E-10 82.2 13.9 62 130-205 262-324 (419)
272 TIGR01944 rnfB electron transp 98.3 3.7E-07 7.9E-12 81.3 3.1 57 482-548 107-163 (165)
273 PTZ00318 NADH dehydrogenase-li 98.3 4.2E-05 9E-10 79.8 19.0 98 23-203 174-279 (424)
274 TIGR01582 FDH-beta formate deh 98.3 4.8E-07 1E-11 87.0 4.1 63 480-550 82-146 (283)
275 COG0445 GidA Flavin-dependent 98.3 1.2E-06 2.7E-11 88.9 7.1 145 22-203 4-157 (621)
276 PRK12387 formate hydrogenlyase 98.3 2.7E-07 5.9E-12 83.6 2.2 58 485-548 35-93 (180)
277 TIGR03197 MnmC_Cterm tRNA U-34 98.3 2.3E-05 4.9E-10 80.7 16.6 63 125-205 129-191 (381)
278 COG4529 Uncharacterized protei 98.3 1.1E-05 2.5E-10 81.4 13.4 159 22-206 1-166 (474)
279 PF00037 Fer4: 4Fe-4S binding 98.3 3.6E-07 7.7E-12 52.3 1.6 24 523-546 1-24 (24)
280 PRK13984 putative oxidoreducta 98.3 2.1E-06 4.6E-11 93.7 9.0 41 20-66 281-321 (604)
281 PRK12831 putative oxidoreducta 98.3 3.2E-05 7E-10 81.4 17.5 111 22-204 281-396 (464)
282 COG0029 NadB Aspartate oxidase 98.3 2.3E-06 5E-11 86.2 8.3 66 130-206 132-198 (518)
283 COG1149 MinD superfamily P-loo 98.3 2.5E-07 5.3E-12 85.9 1.3 57 485-551 66-122 (284)
284 PTZ00153 lipoamide dehydrogena 98.3 3E-06 6.4E-11 91.9 9.7 52 22-79 116-168 (659)
285 PRK07208 hypothetical protein; 98.3 9.7E-07 2.1E-11 93.8 5.9 42 20-67 2-43 (479)
286 PTZ00188 adrenodoxin reductase 98.3 2.7E-06 5.9E-11 87.5 8.5 43 21-69 38-81 (506)
287 PRK06273 ferredoxin; Provision 98.3 3.5E-07 7.6E-12 80.6 1.7 57 485-547 46-110 (165)
288 PRK04965 NADH:flavorubredoxin 98.2 1.7E-05 3.7E-10 81.4 14.4 99 23-205 142-240 (377)
289 TIGR00403 ndhI NADH-plastoquin 98.2 6E-07 1.3E-11 81.1 2.5 58 485-548 59-122 (183)
290 TIGR03169 Nterm_to_SelD pyridi 98.2 6.5E-06 1.4E-10 84.2 10.4 43 330-372 270-312 (364)
291 PRK05888 NADH dehydrogenase su 98.2 1.3E-06 2.7E-11 78.0 4.3 55 487-547 57-116 (164)
292 TIGR03452 mycothione_red mycot 98.2 1.3E-05 2.8E-10 84.3 12.5 49 22-79 2-50 (452)
293 TIGR02352 thiamin_ThiO glycine 98.2 8.1E-05 1.8E-09 75.2 18.0 65 124-205 130-194 (337)
294 PRK06991 ferredoxin; Provision 98.2 5.8E-07 1.3E-11 85.7 2.0 55 484-548 81-135 (270)
295 COG3634 AhpF Alkyl hydroperoxi 98.2 3.1E-06 6.7E-11 80.8 6.7 115 20-203 209-324 (520)
296 COG3573 Predicted oxidoreducta 98.2 1.4E-05 3E-10 76.1 10.9 178 20-204 3-228 (552)
297 COG3349 Uncharacterized conser 98.2 1.7E-06 3.6E-11 88.3 5.1 40 24-69 2-41 (485)
298 PRK11883 protoporphyrinogen ox 98.2 1.7E-06 3.6E-11 91.4 5.4 39 24-68 2-42 (451)
299 PRK05113 electron transport co 98.2 6.6E-07 1.4E-11 81.3 2.0 57 482-548 108-164 (191)
300 PRK07846 mycothione reductase; 98.2 1.6E-05 3.5E-10 83.5 12.6 49 22-79 1-49 (451)
301 KOG0404|consensus 98.2 7.7E-06 1.7E-10 73.4 8.3 119 20-204 6-124 (322)
302 TIGR02374 nitri_red_nirB nitri 98.2 6.3E-06 1.4E-10 92.2 9.8 109 25-205 1-109 (785)
303 PLN02268 probable polyamine ox 98.2 2E-06 4.4E-11 90.2 5.5 40 23-68 1-40 (435)
304 COG1145 NapF Ferredoxin [Energ 98.1 9.2E-07 2E-11 71.9 2.0 61 484-550 25-85 (99)
305 PRK10194 ferredoxin-type prote 98.1 1.7E-06 3.7E-11 77.1 3.8 52 499-550 109-160 (163)
306 TIGR03149 cyt_nit_nrfC cytochr 98.1 1.7E-06 3.6E-11 81.2 3.7 57 485-548 89-145 (225)
307 PF12837 Fer4_6: 4Fe-4S bindin 98.1 4E-07 8.6E-12 51.8 -0.6 23 523-545 2-24 (24)
308 PRK05976 dihydrolipoamide dehy 98.1 3.5E-05 7.6E-10 81.6 13.3 103 22-205 180-282 (472)
309 PRK14989 nitrite reductase sub 98.1 1.5E-05 3.2E-10 89.4 10.8 41 22-64 3-43 (847)
310 TIGR00562 proto_IX_ox protopor 98.1 3.6E-06 7.7E-11 89.1 5.7 43 22-68 2-46 (462)
311 TIGR02066 dsrB sulfite reducta 98.1 7.4E-07 1.6E-11 88.6 0.4 57 486-546 176-232 (341)
312 PTZ00318 NADH dehydrogenase-li 98.1 1.6E-05 3.4E-10 83.0 10.3 37 21-63 9-45 (424)
313 TIGR01971 NuoI NADH-quinone ox 98.1 2.1E-06 4.5E-11 72.7 3.0 56 487-548 42-102 (122)
314 PRK14989 nitrite reductase sub 98.1 3.8E-05 8.1E-10 86.2 13.7 111 23-217 146-256 (847)
315 PLN02568 polyamine oxidase 98.1 4.4E-06 9.6E-11 89.0 6.0 48 19-67 2-49 (539)
316 TIGR00031 UDP-GALP_mutase UDP- 98.1 3.8E-06 8.3E-11 84.9 5.2 38 23-66 2-39 (377)
317 TIGR02494 PFLE_PFLC glycyl-rad 98.1 1E-06 2.2E-11 87.1 0.9 60 483-548 43-102 (295)
318 PRK12810 gltD glutamate syntha 98.1 0.00016 3.6E-09 76.4 17.6 119 22-204 281-400 (471)
319 PRK08764 ferredoxin; Provision 98.1 2E-06 4.3E-11 73.7 2.5 55 484-548 81-135 (135)
320 TIGR03169 Nterm_to_SelD pyridi 98.1 0.00028 6E-09 72.2 18.7 99 23-205 146-244 (364)
321 TIGR02733 desat_CrtD C-3',4' d 98.1 4E-06 8.6E-11 89.4 5.3 63 130-203 231-293 (492)
322 PRK14993 tetrathionate reducta 98.1 1.5E-06 3.3E-11 82.3 1.8 57 485-549 95-151 (244)
323 TIGR01350 lipoamide_DH dihydro 98.0 4.1E-05 8.9E-10 81.0 12.7 101 22-205 170-270 (461)
324 PRK13409 putative ATPase RIL; 98.0 2.5E-06 5.4E-11 91.9 3.2 64 481-551 3-73 (590)
325 TIGR00402 napF ferredoxin-type 98.0 2.3E-06 5E-11 69.4 2.2 54 486-547 32-85 (101)
326 PRK06370 mercuric reductase; V 98.0 5.5E-05 1.2E-09 79.9 13.3 102 22-205 171-272 (463)
327 PRK05249 soluble pyridine nucl 98.0 5E-05 1.1E-09 80.3 12.9 99 22-205 175-273 (461)
328 TIGR02163 napH_ ferredoxin-typ 98.0 2.4E-06 5.3E-11 81.9 2.7 60 481-548 194-254 (255)
329 COG1249 Lpd Pyruvate/2-oxoglut 98.0 4.1E-05 8.9E-10 79.2 11.8 104 20-206 171-274 (454)
330 COG1232 HemY Protoporphyrinoge 98.0 5.7E-06 1.2E-10 84.7 5.3 41 24-68 2-42 (444)
331 TIGR02053 MerA mercuric reduct 98.0 5.8E-05 1.3E-09 79.8 13.1 102 22-205 166-267 (463)
332 PRK07251 pyridine nucleotide-d 98.0 6.6E-05 1.4E-09 78.8 13.1 98 22-205 157-254 (438)
333 TIGR02374 nitri_red_nirB nitri 98.0 6.1E-05 1.3E-09 84.4 13.4 108 23-216 141-248 (785)
334 PRK09564 coenzyme A disulfide 98.0 8.8E-05 1.9E-09 78.1 14.0 98 23-205 150-247 (444)
335 PRK06116 glutathione reductase 98.0 7.6E-05 1.6E-09 78.6 13.4 100 22-205 167-266 (450)
336 PRK06416 dihydrolipoamide dehy 98.0 6.4E-05 1.4E-09 79.5 12.9 102 22-205 172-273 (462)
337 PLN02576 protoporphyrinogen ox 98.0 7.2E-06 1.6E-10 87.6 5.6 43 21-68 11-53 (496)
338 PRK12416 protoporphyrinogen ox 98.0 6.6E-06 1.4E-10 87.1 5.2 45 24-68 3-47 (463)
339 PRK06115 dihydrolipoamide dehy 98.0 8.3E-05 1.8E-09 78.6 13.3 104 22-205 174-277 (466)
340 PRK12778 putative bifunctional 98.0 0.00024 5.3E-09 79.6 17.5 110 22-203 570-685 (752)
341 KOG0399|consensus 98.0 1.9E-05 4.1E-10 85.8 7.9 43 20-68 1783-1825(2142)
342 PRK09476 napG quinol dehydroge 98.0 5E-06 1.1E-10 79.1 3.3 74 485-559 134-220 (254)
343 TIGR02731 phytoene_desat phyto 98.0 7.9E-06 1.7E-10 86.2 5.2 64 131-204 213-276 (453)
344 TIGR03385 CoA_CoA_reduc CoA-di 98.0 0.00012 2.5E-09 76.7 13.9 97 23-205 138-234 (427)
345 PRK09477 napH quinol dehydroge 97.9 4.2E-06 9.1E-11 81.1 2.5 61 482-548 202-262 (271)
346 PRK09898 hypothetical protein; 97.9 8.6E-06 1.9E-10 75.7 4.5 57 485-548 118-174 (208)
347 TIGR01421 gluta_reduc_1 glutat 97.9 0.00012 2.6E-09 77.0 13.4 100 22-205 166-266 (450)
348 COG2768 Uncharacterized Fe-S c 97.9 3.2E-06 7E-11 79.0 1.4 51 486-548 191-243 (354)
349 PRK07818 dihydrolipoamide dehy 97.9 0.00011 2.4E-09 77.8 13.2 103 22-205 172-274 (466)
350 CHL00014 ndhI NADH dehydrogena 97.9 3.7E-06 8E-11 75.0 1.6 58 485-548 56-119 (167)
351 PRK06912 acoL dihydrolipoamide 97.9 0.00012 2.6E-09 77.2 13.3 100 22-205 170-269 (458)
352 PRK10330 formate dehydrogenase 97.9 5.6E-06 1.2E-10 75.3 2.5 53 487-548 55-107 (181)
353 TIGR01424 gluta_reduc_2 glutat 97.9 0.00012 2.6E-09 76.9 12.8 97 22-203 166-262 (446)
354 COG1252 Ndh NADH dehydrogenase 97.9 5.1E-05 1.1E-09 76.7 9.3 38 21-62 2-39 (405)
355 PF12797 Fer4_2: 4Fe-4S bindin 97.9 4E-06 8.6E-11 45.8 0.8 19 523-541 3-21 (22)
356 COG0446 HcaD Uncharacterized N 97.9 0.00011 2.5E-09 76.3 12.2 102 22-205 136-238 (415)
357 TIGR03224 benzo_boxA benzoyl-C 97.9 6E-06 1.3E-10 85.0 2.5 63 484-558 6-68 (411)
358 TIGR00397 mauM_napG MauM/NapG 97.9 1.2E-05 2.6E-10 74.6 4.2 65 485-550 128-199 (213)
359 PRK07118 ferredoxin; Validated 97.9 6.1E-06 1.3E-10 79.8 2.3 54 487-551 212-265 (280)
360 PRK10882 hydrogenase 2 protein 97.9 7E-06 1.5E-10 80.7 2.6 57 486-549 108-164 (328)
361 TIGR02951 DMSO_dmsB DMSO reduc 97.9 8.4E-06 1.8E-10 72.6 2.9 57 487-550 61-117 (161)
362 TIGR02700 flavo_MJ0208 archaeo 97.9 5.7E-06 1.2E-10 78.3 1.7 52 485-547 145-196 (234)
363 PRK07845 flavoprotein disulfid 97.9 0.00016 3.5E-09 76.4 12.9 98 23-205 178-275 (466)
364 PRK14028 pyruvate ferredoxin o 97.9 6E-06 1.3E-10 82.0 1.9 59 484-548 243-309 (312)
365 KOG1276|consensus 97.8 2.1E-05 4.5E-10 77.7 5.4 46 20-69 9-54 (491)
366 COG0562 Glf UDP-galactopyranos 97.8 2E-05 4.4E-10 75.0 4.9 39 22-66 1-39 (374)
367 PLN02507 glutathione reductase 97.8 0.0002 4.2E-09 76.2 12.9 99 22-205 203-301 (499)
368 TIGR02732 zeta_caro_desat caro 97.8 1.9E-05 4.1E-10 83.4 5.2 38 24-67 1-38 (474)
369 PTZ00058 glutathione reductase 97.8 0.00022 4.8E-09 76.4 13.2 101 22-205 237-337 (561)
370 COG3075 GlpB Anaerobic glycero 97.8 2E-05 4.3E-10 75.1 4.5 36 21-62 1-36 (421)
371 TIGR03287 methan_mark_16 putat 97.8 1E-05 2.2E-10 80.3 2.7 53 485-551 299-353 (391)
372 PRK06327 dihydrolipoamide dehy 97.8 0.00022 4.7E-09 75.7 12.9 103 22-205 183-285 (475)
373 COG3486 IucD Lysine/ornithine 97.8 0.00021 4.6E-09 70.6 11.6 156 20-209 3-162 (436)
374 PRK13512 coenzyme A disulfide 97.8 0.00017 3.6E-09 75.6 11.8 94 23-205 149-242 (438)
375 COG1252 Ndh NADH dehydrogenase 97.8 0.0001 2.2E-09 74.5 9.7 102 21-205 154-263 (405)
376 PLN02676 polyamine oxidase 97.8 2.6E-05 5.7E-10 82.5 5.7 42 20-67 24-66 (487)
377 KOG1336|consensus 97.8 0.00016 3.5E-09 72.8 10.8 102 22-205 213-314 (478)
378 PTZ00153 lipoamide dehydrogena 97.8 0.00028 6.1E-09 76.8 13.6 116 22-205 312-428 (659)
379 PLN02785 Protein HOTHEAD 97.8 0.00034 7.4E-09 75.5 13.9 36 20-62 53-88 (587)
380 PRK08318 dihydropyrimidine deh 97.8 1.8E-05 3.8E-10 82.3 3.8 60 485-552 339-402 (420)
381 PLN02529 lysine-specific histo 97.8 3.3E-05 7.1E-10 84.4 6.0 42 20-67 158-199 (738)
382 PRK12775 putative trifunctiona 97.8 0.00095 2.1E-08 76.6 18.0 112 21-204 570-686 (1006)
383 PRK12779 putative bifunctional 97.8 0.0016 3.4E-08 74.2 19.4 110 22-203 447-561 (944)
384 TIGR03377 glycerol3P_GlpA glyc 97.8 0.0086 1.9E-07 64.2 24.2 77 126-216 123-199 (516)
385 PLN02328 lysine-specific histo 97.8 3.3E-05 7.1E-10 84.9 5.7 42 20-67 236-277 (808)
386 PRK14694 putative mercuric red 97.7 0.00038 8.2E-09 73.7 13.6 97 22-205 178-274 (468)
387 PRK06567 putative bifunctional 97.7 3.3E-05 7.1E-10 85.5 5.5 39 19-63 380-418 (1028)
388 PRK08010 pyridine nucleotide-d 97.7 0.00033 7.3E-09 73.6 12.8 97 23-205 159-255 (441)
389 TIGR02912 sulfite_red_C sulfit 97.7 1.1E-05 2.3E-10 80.3 1.3 51 485-546 166-219 (314)
390 COG2907 Predicted NAD/FAD-bind 97.7 3.1E-05 6.7E-10 74.4 4.2 40 21-67 7-46 (447)
391 TIGR02512 Fe_only_hydrog hydro 97.7 8.2E-06 1.8E-10 83.1 0.3 59 484-548 3-70 (374)
392 TIGR01423 trypano_reduc trypan 97.7 0.00037 8.1E-09 73.7 12.8 103 22-205 187-289 (486)
393 PLN02487 zeta-carotene desatur 97.7 4E-05 8.6E-10 81.9 5.4 41 21-67 74-114 (569)
394 KOG2311|consensus 97.7 0.00012 2.5E-09 73.2 8.1 35 20-60 26-60 (679)
395 PRK07846 mycothione reductase; 97.7 0.00048 1E-08 72.4 13.4 98 22-205 166-263 (451)
396 PRK06292 dihydrolipoamide dehy 97.7 0.00049 1.1E-08 72.8 13.6 101 22-205 169-269 (460)
397 PRK05329 anaerobic glycerol-3- 97.7 3.7E-05 8.1E-10 79.1 4.9 35 21-61 1-35 (422)
398 PTZ00052 thioredoxin reductase 97.7 0.00046 9.9E-09 73.5 13.2 97 23-205 183-279 (499)
399 PRK06467 dihydrolipoamide dehy 97.7 0.00042 9E-09 73.3 12.6 102 23-206 175-276 (471)
400 TIGR02176 pyruv_ox_red pyruvat 97.7 2.2E-05 4.7E-10 90.5 2.7 61 483-549 678-762 (1165)
401 COG2221 DsrA Dissimilatory sul 97.7 1.2E-05 2.7E-10 76.5 0.6 45 486-541 170-214 (317)
402 PF00732 GMC_oxred_N: GMC oxid 97.6 3.5E-05 7.5E-10 76.4 3.7 65 132-205 194-259 (296)
403 TIGR03140 AhpF alkyl hydropero 97.6 0.00039 8.6E-09 74.4 12.0 98 23-205 353-451 (515)
404 TIGR03452 mycothione_red mycot 97.6 0.00055 1.2E-08 72.0 12.8 98 22-205 169-266 (452)
405 TIGR02462 pyranose_ox pyranose 97.6 4.7E-05 1E-09 80.5 4.8 38 23-66 1-38 (544)
406 PRK14727 putative mercuric red 97.6 0.00054 1.2E-08 72.7 12.8 98 22-206 188-285 (479)
407 KOG4254|consensus 97.6 0.00025 5.5E-09 70.6 9.4 61 130-206 263-323 (561)
408 KOG0685|consensus 97.6 6.1E-05 1.3E-09 75.7 5.0 43 21-68 20-62 (498)
409 PRK12769 putative oxidoreducta 97.6 3.5E-05 7.6E-10 84.8 3.5 55 486-549 52-106 (654)
410 PRK00783 DNA-directed RNA poly 97.6 2.8E-05 6E-10 75.2 2.2 54 487-550 168-221 (263)
411 PRK10262 thioredoxin reductase 97.6 0.00047 1E-08 69.2 11.1 104 22-205 146-249 (321)
412 cd07030 RNAP_D D subunit of Ar 97.6 3.2E-05 6.9E-10 74.6 2.2 55 488-552 169-223 (259)
413 PLN02546 glutathione reductase 97.6 0.00083 1.8E-08 72.1 13.1 101 22-206 252-352 (558)
414 PRK13795 hypothetical protein; 97.6 3.6E-05 7.7E-10 83.6 2.5 56 483-547 576-631 (636)
415 TIGR03294 FrhG coenzyme F420 h 97.5 2.3E-05 5E-10 73.5 0.6 52 484-546 170-221 (228)
416 PRK13748 putative mercuric red 97.5 0.00085 1.8E-08 72.9 12.8 97 22-205 270-366 (561)
417 PRK15317 alkyl hydroperoxide r 97.5 0.00059 1.3E-08 73.1 11.4 98 23-205 352-450 (517)
418 PRK09898 hypothetical protein; 97.5 3.7E-05 8E-10 71.5 1.9 54 483-549 149-202 (208)
419 TIGR01438 TGR thioredoxin and 97.5 0.00091 2E-08 70.9 12.5 100 23-205 181-280 (484)
420 TIGR01317 GOGAT_sm_gam glutama 97.5 0.0055 1.2E-07 65.0 18.4 39 330-373 443-481 (485)
421 PF06100 Strep_67kDa_ant: Stre 97.5 0.0032 6.8E-08 64.6 15.4 43 23-67 3-45 (500)
422 TIGR03149 cyt_nit_nrfC cytochr 97.5 5.3E-05 1.2E-09 71.1 2.5 55 484-551 121-185 (225)
423 PRK10194 ferredoxin-type prote 97.5 2.7E-05 5.8E-10 69.4 0.5 58 485-549 63-125 (163)
424 PRK02106 choline dehydrogenase 97.5 0.00012 2.6E-09 79.3 5.1 37 20-62 3-40 (560)
425 PRK07569 bidirectional hydroge 97.5 6.2E-05 1.3E-09 71.3 2.5 59 484-548 142-210 (234)
426 TIGR01292 TRX_reduct thioredox 97.5 0.00099 2.1E-08 65.9 11.3 98 22-205 141-239 (300)
427 PLN03000 amine oxidase 97.5 0.00013 2.8E-09 80.4 5.2 41 21-67 183-223 (881)
428 PRK05675 sdhA succinate dehydr 97.5 0.00046 9.9E-09 74.6 9.3 66 131-206 126-191 (570)
429 TIGR00397 mauM_napG MauM/NapG 97.4 8.3E-05 1.8E-09 69.0 3.1 61 486-550 89-160 (213)
430 PRK12809 putative oxidoreducta 97.4 5.3E-05 1.2E-09 83.1 2.0 54 486-548 52-105 (639)
431 PRK13984 putative oxidoreducta 97.4 6.2E-05 1.3E-09 82.3 2.3 58 485-548 42-106 (604)
432 KOG1800|consensus 97.4 0.00021 4.5E-09 69.6 5.4 46 21-70 19-64 (468)
433 PLN02976 amine oxidase 97.3 0.00024 5.1E-09 81.2 5.6 41 21-67 692-732 (1713)
434 PRK12770 putative glutamate sy 97.3 0.0013 2.9E-08 66.7 10.4 33 23-61 173-206 (352)
435 PRK09476 napG quinol dehydroge 97.3 0.00017 3.8E-09 68.7 3.3 58 488-549 97-165 (254)
436 COG2878 Predicted NADH:ubiquin 97.3 3.6E-05 7.9E-10 66.5 -1.3 68 473-550 100-167 (198)
437 PRK07118 ferredoxin; Validated 97.3 9.9E-05 2.1E-09 71.5 1.3 45 499-548 144-188 (280)
438 PRK09326 F420H2 dehydrogenase 97.3 9.5E-05 2.1E-09 74.3 1.1 57 483-545 7-70 (341)
439 TIGR03478 DMSO_red_II_bet DMSO 97.3 6.7E-05 1.5E-09 72.1 -0.0 53 482-547 156-217 (321)
440 COG1206 Gid NAD(FAD)-utilizing 97.2 0.001 2.2E-08 63.7 7.2 117 21-157 2-126 (439)
441 PF12800 Fer4_4: 4Fe-4S bindin 97.2 0.00021 4.5E-09 37.0 1.5 17 527-543 1-17 (17)
442 COG3383 Uncharacterized anaero 97.2 0.00019 4.2E-09 75.4 2.4 59 481-545 142-209 (978)
443 PF13484 Fer4_16: 4Fe-4S doubl 97.2 5.4E-05 1.2E-09 56.4 -1.4 44 499-542 5-66 (67)
444 PF13247 Fer4_11: 4Fe-4S diclu 97.1 0.00011 2.5E-09 58.6 0.2 54 482-548 34-96 (98)
445 TIGR01318 gltD_gamma_fam gluta 97.1 0.0036 7.9E-08 66.1 11.6 110 22-203 282-397 (467)
446 PRK11749 dihydropyrimidine deh 97.1 0.0033 7.2E-08 66.3 11.0 110 22-204 273-387 (457)
447 PRK08493 NADH dehydrogenase su 97.1 0.00018 3.8E-09 79.5 1.3 58 483-548 136-224 (819)
448 PRK14993 tetrathionate reducta 97.1 0.00014 3.1E-09 68.9 0.4 54 482-548 124-186 (244)
449 TIGR03862 flavo_PP4765 unchara 97.1 0.0027 5.8E-08 64.2 9.5 142 51-218 1-162 (376)
450 TIGR02064 dsrA sulfite reducta 97.0 0.00024 5.2E-09 72.1 1.4 43 499-546 247-289 (402)
451 PRK05329 anaerobic glycerol-3- 97.0 0.02 4.4E-07 59.1 15.4 58 132-203 260-317 (422)
452 PF14697 Fer4_21: 4Fe-4S diclu 97.0 0.00046 1E-08 49.5 2.3 24 524-547 2-25 (59)
453 TIGR02951 DMSO_dmsB DMSO reduc 97.0 0.00023 4.9E-09 63.4 0.9 54 483-549 90-152 (161)
454 PRK10882 hydrogenase 2 protein 97.0 0.00021 4.6E-09 70.3 0.7 53 484-547 139-204 (328)
455 PRK10330 formate dehydrogenase 97.0 0.00039 8.6E-09 63.2 2.3 59 485-549 84-156 (181)
456 COG2303 BetA Choline dehydroge 97.0 0.00075 1.6E-08 72.3 4.6 37 19-61 4-40 (542)
457 TIGR01810 betA choline dehydro 96.9 0.00073 1.6E-08 72.7 3.9 61 133-205 196-256 (532)
458 PF12798 Fer4_3: 4Fe-4S bindin 96.9 0.00025 5.4E-09 35.3 0.0 15 530-544 1-15 (15)
459 PRK12814 putative NADPH-depend 96.8 0.0079 1.7E-07 66.2 11.2 34 22-61 323-357 (652)
460 TIGR01582 FDH-beta formate deh 96.8 0.00035 7.6E-09 67.4 0.5 54 482-548 118-180 (283)
461 COG0437 HybA Fe-S-cluster-cont 96.8 0.00067 1.4E-08 61.4 2.1 54 481-547 93-155 (203)
462 PF13434 K_oxygenase: L-lysine 96.8 0.025 5.3E-07 57.0 13.4 142 20-202 188-339 (341)
463 COG4231 Indolepyruvate ferredo 96.7 0.00064 1.4E-08 70.7 1.8 52 484-546 573-626 (640)
464 COG1148 HdrA Heterodisulfide r 96.6 0.00071 1.5E-08 68.1 1.0 57 485-548 222-291 (622)
465 TIGR01372 soxA sarcosine oxida 96.6 0.027 5.9E-07 65.1 13.9 103 23-216 318-421 (985)
466 KOG3851|consensus 96.6 0.0057 1.2E-07 58.5 6.8 40 19-62 36-75 (446)
467 TIGR03336 IOR_alpha indolepyru 96.6 0.00071 1.5E-08 73.5 1.0 47 485-545 547-595 (595)
468 PRK05035 electron transport co 96.6 0.00055 1.2E-08 74.4 0.1 52 486-543 368-424 (695)
469 TIGR03143 AhpF_homolog putativ 96.6 0.016 3.5E-07 62.6 11.2 35 22-62 143-177 (555)
470 TIGR02163 napH_ ferredoxin-typ 96.5 0.0016 3.4E-08 62.6 2.8 48 500-547 172-220 (255)
471 PRK12387 formate hydrogenlyase 96.5 0.0011 2.4E-08 60.0 1.7 50 499-550 11-60 (180)
472 KOG0405|consensus 96.5 0.036 7.9E-07 53.8 11.7 43 20-68 18-60 (478)
473 KOG2495|consensus 96.4 0.016 3.5E-07 57.9 8.9 112 21-211 217-337 (491)
474 COG1251 NirB NAD(P)H-nitrite r 96.4 0.0096 2.1E-07 63.5 7.8 109 24-218 147-255 (793)
475 COG1144 Pyruvate:ferredoxin ox 96.4 0.0024 5.3E-08 48.7 2.5 38 521-559 28-66 (91)
476 KOG1336|consensus 96.4 0.016 3.5E-07 58.8 8.9 42 142-202 138-179 (478)
477 PRK01438 murD UDP-N-acetylmura 96.4 0.011 2.4E-07 62.8 8.4 33 23-61 17-49 (480)
478 TIGR02745 ccoG_rdxA_fixG cytoc 96.2 0.0019 4.2E-08 66.3 1.5 40 487-542 230-269 (434)
479 PRK09477 napH quinol dehydroge 96.2 0.00095 2.1E-08 64.8 -0.8 47 500-546 179-226 (271)
480 KOG0063|consensus 96.2 0.0024 5.2E-08 63.5 1.9 56 481-546 7-68 (592)
481 COG1143 NuoI Formate hydrogenl 96.2 0.0023 5E-08 56.6 1.6 28 522-549 49-76 (172)
482 PRK09853 putative selenate red 96.2 0.041 8.9E-07 62.4 11.6 57 486-544 884-942 (1019)
483 TIGR01660 narH nitrate reducta 96.1 0.0017 3.8E-08 65.2 0.5 53 482-547 208-269 (492)
484 KOG1238|consensus 96.0 0.0078 1.7E-07 63.5 5.0 40 19-63 54-93 (623)
485 TIGR02731 phytoene_desat phyto 96.0 0.48 1E-05 50.0 18.3 38 24-67 1-38 (453)
486 TIGR01973 NuoG NADH-quinone ox 96.0 0.0052 1.1E-07 67.1 3.4 58 482-546 136-200 (603)
487 COG1142 HycB Fe-S-cluster-cont 95.8 0.0048 1E-07 53.9 1.9 60 482-548 76-139 (165)
488 TIGR01945 rnfC electron transp 95.8 0.0036 7.9E-08 65.1 1.3 52 486-543 361-417 (435)
489 PRK12771 putative glutamate sy 95.8 0.069 1.5E-06 58.0 11.2 39 331-374 409-447 (564)
490 PF13237 Fer4_10: 4Fe-4S diclu 95.7 0.005 1.1E-07 43.0 1.3 21 522-542 1-21 (52)
491 TIGR02936 fdxN_nitrog ferredox 95.7 0.0045 9.7E-08 49.2 1.1 28 521-548 14-41 (91)
492 PRK09626 oorD 2-oxoglutarate-a 95.7 0.0047 1E-07 50.2 1.2 30 521-550 9-38 (103)
493 TIGR02486 RDH reductive dehalo 95.6 0.0048 1E-07 60.8 1.3 50 488-543 205-279 (314)
494 KOG4716|consensus 95.6 0.012 2.6E-07 56.8 3.8 35 19-59 16-50 (503)
495 COG1600 Uncharacterized Fe-S p 95.6 0.0038 8.3E-08 61.2 0.6 58 488-553 185-257 (337)
496 TIGR03315 Se_ygfK putative sel 95.6 0.17 3.7E-06 57.7 13.6 59 486-547 879-940 (1012)
497 PF00037 Fer4: 4Fe-4S binding 95.6 0.0039 8.6E-08 35.6 0.4 22 485-512 3-24 (24)
498 PF12837 Fer4_6: 4Fe-4S bindin 95.6 0.0021 4.5E-08 36.6 -0.8 22 484-511 3-24 (24)
499 PRK07860 NADH dehydrogenase su 95.5 0.011 2.3E-07 66.7 3.5 58 482-546 144-208 (797)
500 PF01593 Amino_oxidase: Flavin 95.4 0.014 3E-07 60.9 3.8 64 125-205 203-266 (450)
No 1
>KOG2415|consensus
Probab=100.00 E-value=3e-112 Score=803.39 Aligned_cols=546 Identities=54% Similarity=0.993 Sum_probs=522.9
Q ss_pred CCCCCCCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCcc
Q psy14497 13 NKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLF 91 (561)
Q Consensus 13 ~~~~~~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~ 91 (561)
.++++|+...+||+|||||||||++|+.|.++.++++..++|+|+||...+|++.++|++++|.++++++++|. .+.++
T Consensus 67 ~v~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl 146 (621)
T KOG2415|consen 67 DVNMERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPL 146 (621)
T ss_pred cccchhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcc
Confidence 34455777889999999999999999999999888888999999999999999999999999999999999999 88999
Q ss_pred ccccchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14497 92 NTPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
..+++.+.+.++.....+.+| .|.++.++++|+++.++|.+||.++|++.||+|+++..+.++.+++||.|.||.|.
T Consensus 147 ~t~vT~d~~~fLt~~~~i~vP---v~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~ 223 (621)
T KOG2415|consen 147 NTPVTSDKFKFLTGKGRISVP---VPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATN 223 (621)
T ss_pred cccccccceeeeccCceeecC---CCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeec
Confidence 999999999999998888877 44678899999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEecc
Q psy14497 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGW 251 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (561)
|.|+.++|.+|.+|+.|.++.|++.|.|+|+++.+.++++++++++....+++|++|++++|++++..+.+|.+.|+++|
T Consensus 224 D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~Gw 303 (621)
T KOG2415|consen 224 DVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGW 303 (621)
T ss_pred cccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeec
Q psy14497 252 PLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIF 331 (561)
Q Consensus 252 p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (561)
|++...||++|+|++++..+.+|+++.+++.+|..+|+.+||+++.||.++..+++++++.|+++++.++|+++.|++++
T Consensus 304 Pl~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~F 383 (621)
T KOG2415|consen 304 PLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVF 383 (621)
T ss_pred cccCCccCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccc----hhhHHHHHhhchhhHhhhhhhccchhhh-
Q psy14497 332 DGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK----LITYKTSFQASWLYKELYKARNFKPAMK- 406 (561)
Q Consensus 332 ~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~----l~~y~~~~~~~~~~~~~~~~~~~~~~~~- 406 (561)
++-+|||.+|+++|.....|.++||.+|+++|++|.+++.+...+.. +..|++.++++|++++++..||+++.|+
T Consensus 384 PGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~ 463 (621)
T KOG2415|consen 384 PGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHG 463 (621)
T ss_pred CCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCccccc
Confidence 99999999999999999999999999999999999999976543221 5699999999999999999999999995
Q ss_pred -hhhhHHHHHHHHHHHHhcCCCCccccCCCCccCCcccccCCCCCCCCCCCCccccccccceeccccccCCCCCCceEEc
Q psy14497 407 -KGLYIGMLIIGIDQILFSGKFPFTLHNINSDYTYLEPASKHIPIKYPNPDNKLTFDKLSSIYVSNINHDEDQPIHLILK 485 (561)
Q Consensus 407 -~g~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fd~~~~~~~~~~~~~~~~~~h~~~~ 485 (561)
.|.|.|+..+++..++.+|+.||+|.|+..|...+++++++.+++||+||++++||.++||+++|++|++|||||++++
T Consensus 464 ~lG~ygGmiySgi~~~~lkG~~PwTLkh~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~HL~l~ 543 (621)
T KOG2415|consen 464 KLGLYGGMIYSGIFSYVLKGKVPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPAHLTLR 543 (621)
T ss_pred ccccccchhhhhhHHHhhcCccceeeccCCCchhhccchhhCCCcccCCCCceEEEeecchhhccCCCCCCCCCceeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCc--eeEEEEccCCCccCCcccccCCCCCeeEECCCCCCCCCCCCC
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNK--IQHLQINAQNCIHCKTCDIKDPTQNIEWITPEGGSGTNYPNM 561 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~--~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g~~g~~~~~~ 561 (561)
|+++..+.+++.|.++..+||||+|||+++++.+ .++++||.+|||||+||+|+.|.++|+|.+||||.||.|..|
T Consensus 544 ~~~ip~~~nf~~y~gpE~rfCPAgVYEyV~dE~~~~~krlqINaQNCiHCKtCDIKdP~QnI~W~vPeGGgGP~Y~~m 621 (621)
T KOG2415|consen 544 DDDIPVKVNFPVYKGPESRFCPAGVYEYVPDEAGPVGKRLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPKYTLM 621 (621)
T ss_pred CCCcchhcCcccccChhhccCCccceeecccccCCCcceEEEccccceecccccccCcccCceeeCcCCCCCCCcccC
Confidence 9999999999999999999999999999887644 358999999999999999999999999999999999999987
No 2
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=5.8e-42 Score=354.38 Aligned_cols=374 Identities=23% Similarity=0.423 Sum_probs=291.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
.+|||+||||||||+++|+.|++. |++|+|+||.+.+|.+..+|+.+....++.+++.+....++...+..+.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~------G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~ 77 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA------GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKI 77 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeE
Confidence 359999999999999999999999 99999999999998877778887777777776654333444445554555
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCc
Q psy14497 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGI 180 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~ 180 (561)
.++..+....++.............|.+.|..|+++|.+++++.|++++.+++|+++..+ ++.+.+|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~--------- 147 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAG--------- 147 (429)
T ss_pred EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeC---------
Confidence 555443322222100000011124789999999999999999999999999999998764 4555556542
Q ss_pred eecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCcc--------CCCcEEEEeccC
Q psy14497 181 IKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLH--------KKGLVIHTIGWP 252 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~p 252 (561)
+.+++||+||+|||.+|.+++. +++.....+..+.++++..+.+++... ..+..++.+++|
T Consensus 148 -------~~~i~A~~VI~AdG~~s~v~~~----lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~ 216 (429)
T PRK10015 148 -------DDILEANVVILADGVNSMLGRS----LGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSP 216 (429)
T ss_pred -------CeEEECCEEEEccCcchhhhcc----cCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCcc
Confidence 2479999999999999999887 666555556677788888777654321 235566777776
Q ss_pred CCCCCCceEEEEEcCCCeEEEEEEecCC-CCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeec
Q psy14497 253 LDYKTYGGGFLYHMENNQISIGYIISLD-YKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIF 331 (561)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~vg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (561)
.. +..|++|+|+. .+.++||++.... ..+...++.+.++.|+.||.+++++++++.+++..+.+|.+++...|+++.
T Consensus 217 ~~-g~~g~G~~~~~-~d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~ 294 (429)
T PRK10015 217 SD-GLMGGGFLYTN-KDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVN 294 (429)
T ss_pred CC-CCCCceEEEEc-CCcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCcccc
Confidence 64 67788999995 5789999876543 234456788899999999999999999999999999999999988899999
Q ss_pred CCEEEEecCCccCCC--cccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhchhhHhhhhhhccchhhh--
Q psy14497 332 DGGAFIGCNAGFMNV--SRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQASWLYKELYKARNFKPAMK-- 406 (561)
Q Consensus 332 ~~v~lvGDAA~~~~P--~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~~-- 406 (561)
+|++++||||++++| ++|+|+++||.+|.++|+++.+++..++.+.. |+.|++.++++|+.++++..+++..++.
T Consensus 295 ~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~ 374 (429)
T PRK10015 295 DGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENP 374 (429)
T ss_pred CCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCc
Confidence 999999999999984 69999999999999999999999987776655 9999999999999999999999999984
Q ss_pred --hhhhHHHHHHHHHHHHh
Q psy14497 407 --KGLYIGMLIIGIDQILF 423 (561)
Q Consensus 407 --~g~~~g~~~~~~~~~~~ 423 (561)
...|..++...+..++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~ 393 (429)
T PRK10015 375 RLFSQYPRMVADIMNDMFT 393 (429)
T ss_pred cHHHHHHHHHHHHHHHhcc
Confidence 34445566666666654
No 3
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=1.8e-40 Score=341.24 Aligned_cols=340 Identities=33% Similarity=0.555 Sum_probs=273.7
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
+|+|||+||||||||++||+.|++. |++|+|+||...+|.+..+|+.+.+..+.++.+.+... +...+....
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~------G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~--i~~~v~~~~ 72 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKA------GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE--IERKVTGAR 72 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHc------CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh--hheeeeeeE
Confidence 4789999999999999999999999 99999999999999999898999999999988776521 333444333
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+........+..+ ...+|+++|..|++||++.+++.|++++.++++.++..++++.++++...
T Consensus 73 ~~~~~~~~~~~~~---------~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~-------- 135 (396)
T COG0644 73 IYFPGEKVAIEVP---------VGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAG-------- 135 (396)
T ss_pred EEecCCceEEecC---------CCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcC--------
Confidence 3333111111111 12389999999999999999999999999999999998766655555442
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCCc
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYG 259 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 259 (561)
+.+++||+||+|||.+|.+++. +++. ...+..+.+++++.+..+ ..+...+.+.|+......|
T Consensus 136 --------~~e~~a~~vI~AdG~~s~l~~~----lg~~-~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~G 198 (396)
T COG0644 136 --------DDEVRAKVVIDADGVNSALARK----LGLK-DRKPEDYAIGVKEVIEVP----DDGDVEEFLYGPLDVGPGG 198 (396)
T ss_pred --------CEEEEcCEEEECCCcchHHHHH----hCCC-CCChhheeEEeEEEEecC----CCCceEEEEecCCccCCCc
Confidence 2589999999999999999888 5665 555677888888888877 3344567777777778889
Q ss_pred eEEEEEcCCCeEEEEEEecCCCCCCCCChH-HHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEEe
Q psy14497 260 GGFLYHMENNQISIGYIISLDYKNPYLSPF-EEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFIG 338 (561)
Q Consensus 260 ~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvG 338 (561)
++|+||.+++.+++|+....+. +...+. +.++.|+.+|.+...+.+++.+++..+.+|.+++...| +..+|+++||
T Consensus 199 y~wifP~~~~~~~VG~g~~~~~--~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~-~~~~~~~lvG 275 (396)
T COG0644 199 YGWIFPLGDGHANVGIGVLLDD--PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP-LVGDGVLLVG 275 (396)
T ss_pred eEEEEECCCceEEEEEEEecCC--cCCCchHHHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCc-cccCCEEEEe
Confidence 9999999999999999987665 333333 88999999998888888889999999999999987777 8889999999
Q ss_pred cCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhhh
Q psy14497 339 CNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMK 406 (561)
Q Consensus 339 DAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~ 406 (561)
|||++++|++|+|+..||.+|.+||+.|.+++..+ ...|..|++.+++++..+.+...+....+.+
T Consensus 276 DAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~--~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~ 341 (396)
T COG0644 276 DAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG--EEALAEYERLLRKSLAREDLKSLRLLKLLLR 341 (396)
T ss_pred ccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 99999999999999999999999999999998755 2348899999999876555555444444333
No 4
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=100.00 E-value=6.7e-40 Score=339.58 Aligned_cols=373 Identities=22% Similarity=0.392 Sum_probs=285.3
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
..|||+||||||||+++|+.|+++ |++|+|+||.+.++.+..+|+.+....++++++.+....++...+..+.+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~------G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE------GAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC------CCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence 359999999999999999999999 99999999999998887788888777777776655423333333333333
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCc
Q psy14497 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGI 180 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~ 180 (561)
.++...+...+..............|.+.|.+|+++|.+.+++.|++++.+++|+++..+ ++.++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~---------- 146 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEA---------- 146 (428)
T ss_pred EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEc----------
Confidence 444433322222110000001123788999999999999999999999999999999765 455555543
Q ss_pred eecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCcc--------CCCcEEEEeccC
Q psy14497 181 IKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLH--------KKGLVIHTIGWP 252 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~p 252 (561)
+|.+++||+||+|||.+|.++++ +++.....+..+.+++++.++++.... ..+..+...++|
T Consensus 147 ------~g~~i~A~~VI~A~G~~s~l~~~----lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 216 (428)
T PRK10157 147 ------DGDVIEAKTVILADGVNSILAEK----LGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSP 216 (428)
T ss_pred ------CCcEEECCEEEEEeCCCHHHHHH----cCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECC
Confidence 13479999999999999998877 677655556666778887776653211 245566666777
Q ss_pred CCCCCCceEEEEEcCCCeEEEEEEecCCCC-CCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeec
Q psy14497 253 LDYKTYGGGFLYHMENNQISIGYIISLDYK-NPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIF 331 (561)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (561)
.. +..|++|+|+. ++.+++|++...+.. +....+.+.++.|+.+|.+.+.+++++.+++..+.+|.+++...|++..
T Consensus 217 ~~-g~~ggG~~~~~-~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~ 294 (428)
T PRK10157 217 TD-GLMGGGFLYTN-ENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVG 294 (428)
T ss_pred CC-CCcCceeEEEc-CCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCceec
Confidence 54 57778899985 578999998765432 3346678888999999999999999998899999999988878888999
Q ss_pred CCEEEEecCCccCCC--cccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhchhhHhhhhhhccchhhh--
Q psy14497 332 DGGAFIGCNAGFMNV--SRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQASWLYKELYKARNFKPAMK-- 406 (561)
Q Consensus 332 ~~v~lvGDAA~~~~P--~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~~-- 406 (561)
++++++||||++++| ++|+|+++||.+|.++|+++.+++..++.+.. |..|++.++++ +.++++..+++..++.
T Consensus 295 ~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~-~~~~l~~~~~~~~~~~~~ 373 (428)
T PRK10157 295 DGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG-PLRDMRMYQKLPAFLDNP 373 (428)
T ss_pred CCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh-HHHHHHHHhccHHHhcCc
Confidence 999999999999998 59999999999999999999999988776665 99999999998 6899999999988883
Q ss_pred --hhhhHHHHHHHHHHHHh
Q psy14497 407 --KGLYIGMLIIGIDQILF 423 (561)
Q Consensus 407 --~g~~~g~~~~~~~~~~~ 423 (561)
+..|..++...+..++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~ 392 (428)
T PRK10157 374 RMFSGYPELAVGVARDLFT 392 (428)
T ss_pred cHHHHHHHHHHHHHHHhee
Confidence 34555666666666654
No 5
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=7.6e-31 Score=271.78 Aligned_cols=342 Identities=17% Similarity=0.221 Sum_probs=214.2
Q ss_pred CCCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccc
Q psy14497 17 PRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVI 96 (561)
Q Consensus 17 ~~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~ 96 (561)
++..+++||+||||||||+++|+.|++. |++|+|+||.... . ..+|+.+....++++ +.+. ......+
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA~~------G~~VlllEr~~~~-~-k~cgg~i~~~~l~~l-gl~~--~~~~~~i- 101 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLAKG------GIETFLIERKLDN-A-KPCGGAIPLCMVGEF-DLPL--DIIDRKV- 101 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCC-C-CCccccccHhHHhhh-cCcH--HHHHHHh-
Confidence 3566789999999999999999999999 9999999998642 2 225666665555433 1111 0000011
Q ss_pred hhhhhhhcCCC-CcccCCCCCCceeecCC-cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCC-CCEEEEEeccc
Q psy14497 97 EERFLFLSSKK-SYKIPSWILPICFKNHG-NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSK-NNVCGIATNNF 173 (561)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~p~~~~~~~-~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~-g~v~~V~~~~~ 173 (561)
..+.+.++.+ .+.++ ......+ .++++|..|+++|.+++.+.|++++.+ .++++...++ +..+.|.+.+.
T Consensus 102 -~~~~~~~p~~~~v~~~-----~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~ 174 (450)
T PLN00093 102 -TKMKMISPSNVAVDIG-----KTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSY 174 (450)
T ss_pred -hhheEecCCceEEEec-----ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEec
Confidence 1122222211 11111 0000111 235899999999999999999999876 4777754221 22334444221
Q ss_pred ccc-cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCC--ccCCCcEEEEec
Q psy14497 174 GIN-KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPK--LHKKGLVIHTIG 250 (561)
Q Consensus 174 ~~~-~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 250 (561)
..+ .+|+ +.+++||+||+|||.+|.+++. +++.. ..+.++++..+..+.. .+..+....+++
T Consensus 175 ~~~~~~g~-------~~~v~a~~VIgADG~~S~vrr~----lg~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 239 (450)
T PLN00093 175 DSGSGAGT-------PKTLEVDAVIGADGANSRVAKD----IDAGD----YDYAIAFQERIKIPDDKMEYYEDLAEMYVG 239 (450)
T ss_pred cccccCCC-------ccEEEeCEEEEcCCcchHHHHH----hCCCC----cceeEEEEEEEeCChhhccccCCeEEEEeC
Confidence 000 0111 2479999999999999999988 44432 2344666655555532 223333333333
Q ss_pred cCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeee
Q psy14497 251 WPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFI 330 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (561)
... ...++.|+||.++ .+.||...... .....+.++.+... +...+.+++.+......+|. ...+++.
T Consensus 240 ~~~--~p~~Y~WifP~g~-~~~VG~g~~~~----~~~~~~~~~~l~~~--~~~~l~~~~~~~~~~~~ip~---~~~~~~~ 307 (450)
T PLN00093 240 DDV--SPDFYGWVFPKCD-HVAVGTGTVVN----KPAIKKYQRATRNR--AKDKIAGGKIIRVEAHPIPE---HPRPRRV 307 (450)
T ss_pred CCC--CCCceEEEEECCC-cEEEEEEEccC----CCChHHHHHHHHHH--hhhhcCCCeEEEEEEEEccc---cccccee
Confidence 222 2345689999884 56788753221 11233333333211 22334455666665556665 2356788
Q ss_pred cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC--Cccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 331 FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN--KFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 331 ~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~--~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
.+|++|+|||||.++|++|+|+++||.+|.+||+.+.+.+..++ .+.. |+.|++.|++.+ .++++....++++|
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~-g~~~~~~~~l~~~~ 384 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKY-WPTYKVLDILQKVF 384 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999886542 2233 999999998764 67777777776666
No 6
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=1.8e-30 Score=266.61 Aligned_cols=340 Identities=16% Similarity=0.167 Sum_probs=198.1
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC-CCCCceeecceeChhhHHhhcccccc-CCccccccchh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS-ELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIEE 98 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~-~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~~ 98 (561)
+.+||+||||||+||++|+.|++. |++|+|||+.+ ... ....+..+.+.+++-+ ..++. ...........
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~------G~~V~l~E~~~~~~~-~~~r~~~l~~~~~~~L-~~lG~~~~i~~~~~~~~ 72 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARA------GLDVTLLERAPRELL-ERGRGIALSPNALRAL-ERLGLWDRLEALGVPPL 72 (387)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhC------CCcEEEEccCccccc-cCceeeeecHhHHHHH-HHcCChhhhhhccCCce
Confidence 468999999999999999999999 99999999982 221 1225667777776533 22221 11111111111
Q ss_pred hhhhhcCCC--CcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14497 99 RFLFLSSKK--SYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 99 ~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
........+ .+.+...... ....++.+.+.+|.+.|.+++.+.+ ++++++++|+.+..+++ .+. +.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~---- 143 (387)
T COG0654 73 HVMVVDDGGRRLLIFDAAELG---RGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLS---- 143 (387)
T ss_pred eeEEEecCCceeEEecccccC---CCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEc----
Confidence 111121111 1122211111 1344889999999999999998865 99999999999988643 333 5542
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCcccc-ceeEEEEeeCCCccCCCcEEEEeccCCC
Q psy14497 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYS-LGIKELWTINPKLHKKGLVIHTIGWPLD 254 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 254 (561)
+ +|.+++||+||+|||.+|.+|+. .+.... ....|. ..+...+... ....+.....+
T Consensus 144 ---------~-dG~~~~a~llVgADG~~S~vR~~----~~~~~~-~~~~y~~~~l~~~~~~~--~~~~~~~~~~~----- 201 (387)
T COG0654 144 ---------F-DGETLDADLLVGADGANSAVRRA----AGIAEF-SGRDYGQTALVANVEPE--EPHEGRAGERF----- 201 (387)
T ss_pred ---------C-CCcEEecCEEEECCCCchHHHHh----cCCCCc-cCCCCCceEEEEEeecC--CCCCCeEEEEe-----
Confidence 1 46689999999999999999988 552221 111121 1111112111 11223232222
Q ss_pred CCCCceEEEEEcCCCeEEEEEEecCCC--CCCCCChHHHHHHhh-hChhHHHhhcCCeeeeecc-eeeccCCCccCCeee
Q psy14497 255 YKTYGGGFLYHMENNQISIGYIISLDY--KNPYLSPFEEFQRYK-THPKICKILKGGKRISYGA-RTITTGGLQSLPEFI 330 (561)
Q Consensus 255 ~~~~g~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 330 (561)
...+..-++|..++...+.+...... .............+. ..+.... .+....... ..+|.. .....+|.
T Consensus 202 -~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~pl~-~~~a~~~~ 276 (387)
T COG0654 202 -THAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP---LGRVTLVSSRSAFPLS-LRVAERYR 276 (387)
T ss_pred -cCCCceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc---cceEEEcccccccccc-chhhhhee
Confidence 22233346687755555555543321 111112222111111 0010000 011111111 112211 12234677
Q ss_pred cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 331 FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 331 ~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
.+|++|+|||||.++|+.|||+|+|++|+..||+.|.+....+.....|+.|+++++.. +.+.+..++.+...|
T Consensus 277 ~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~ 350 (387)
T COG0654 277 RGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPR-AEAIQKLSRALGRLF 350 (387)
T ss_pred cCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhH-HHHHHHHHHHHhhhh
Confidence 79999999999999999999999999999999999999876433323399999999865 556666666555555
No 7
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=2.3e-30 Score=266.85 Aligned_cols=343 Identities=13% Similarity=0.150 Sum_probs=196.9
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCcccc-ccch
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNT-PVIE 97 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~-~~~~ 97 (561)
+.++||+|||||||||++|+.|++. |++|+|+|+.+.+.... .+..+.+.+++-+ ..++ ....... ....
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~~-~~~~l~~~~~~~L-~~lGl~~~~~~~~~~~~ 74 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGAR------GHSVTVVERAARNRAQN-GADLLKPSGIGVV-RAMGLLDDVFAAGGLRR 74 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhc------CCcEEEEeCCCcccCCC-cccccCccHHHHH-HHcCCHHHHHhcccccc
Confidence 4568999999999999999999999 99999999998764321 2334666665422 2222 0000000 0001
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCC-cEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHG-NYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
..+.+... +.... ...++.. ...+ .+.++|..|.+.|.+.+.+ .|++++++++|+++..++++.++.|.+
T Consensus 75 ~~~~~~~~-g~~~~-~~~~~~~-~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~----- 146 (388)
T PRK07045 75 DAMRLYHD-KELIA-SLDYRSA-SALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTL----- 146 (388)
T ss_pred cceEEecC-CcEEE-EecCCcc-ccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEe-----
Confidence 11111111 11111 0111110 0112 3468899999999999865 689999999999998876665555655
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCC--CCccccceeEEEEeeCCCccCCCcEEEEeccCC
Q psy14497 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKK--DPQTYSLGIKELWTINPKLHKKGLVIHTIGWPL 253 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 253 (561)
++|.++++|+||+|||.+|.+|+++. +..... .......+. +..... . .......+ .
T Consensus 147 ----------~~g~~~~~~~vIgADG~~S~vR~~~~---~~~~~~~~~~~~~~~~~---~~~~~~-~-~~~~~~~~-~-- 205 (388)
T PRK07045 147 ----------SDGERVAPTVLVGADGARSMIRDDVL---RMPAERVPYATPMAFGT---IALTDS-V-RECNRLYV-D-- 205 (388)
T ss_pred ----------CCCCEEECCEEEECCCCChHHHHHhh---CCCcccCCCCcceeEEE---EeccCC-c-cccceEEE-c--
Confidence 34568999999999999999988642 332211 111111221 111211 1 11111111 1
Q ss_pred CCCCCceEEEEEcCCCeEEEEEEecCCCCCCC---CChHHHHHHhhhC--hhHHHhhcCCee-eeecceeeccCCCccCC
Q psy14497 254 DYKTYGGGFLYHMENNQISIGYIISLDYKNPY---LSPFEEFQRYKTH--PKICKILKGGKR-ISYGARTITTGGLQSLP 327 (561)
Q Consensus 254 ~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 327 (561)
...+..|++|..++...+.+....+..... ....+..+.+... +.+.+.+..-.. ..+. ..+.. ....+
T Consensus 206 --~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~ 280 (388)
T PRK07045 206 --SNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFP--LIPLG-RMNLD 280 (388)
T ss_pred --CCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccc--eeecC-ccccc
Confidence 123345678887777666665543221111 1111211222111 222222211000 0110 11111 12356
Q ss_pred eeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 328 EFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 328 ~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
+|+.+|++|+|||||.++|+.|||+|+||+||..||+.|...+........ |++|+++++.. ....+..++.+...+
T Consensus 281 ~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~ 358 (388)
T PRK07045 281 RYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPV-NEAVISYGHALATTY 358 (388)
T ss_pred cccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhH-HHHHHhhhHHHhhhc
Confidence 888899999999999999999999999999999999999887643322233 99999988864 344455555555554
No 8
>PRK08013 oxidoreductase; Provisional
Probab=99.98 E-value=2.5e-30 Score=267.08 Aligned_cols=339 Identities=15% Similarity=0.107 Sum_probs=192.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-----eecceeChhhHHhhccccc-cCCcccc-c
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-----LSGAIIDPRSIFELFPKEK-LNKLFNT-P 94 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-----~~G~~~~~~~l~~l~~~~~-~~~~~~~-~ 94 (561)
++||+||||||+||++|+.|++. |++|+|+|+.+.+.... ..+..++++.++ ++..++ ....... .
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~------G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~-~L~~lGl~~~~~~~~~ 75 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS------GLRVAVLEQRVPEPLAADAPPALRVSAINAASEK-LLTRLGVWQDILARRA 75 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC------CCEEEEEeCCCCcccccCCCCCceeeecchhHHH-HHHHcCCchhhhhhcC
Confidence 58999999999999999999999 99999999998643211 122345665544 223322 0110000 0
Q ss_pred cchhhhhhhcCC--CCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14497 95 VIEERFLFLSSK--KSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 95 ~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
.....+.+.+.. ..+.+...... ....++.+.|..|.+.|.+.+.+. |++++++++|++++.++++ +.|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~- 149 (400)
T PRK08013 76 SCYHGMEVWDKDSFGRIAFDDQSMG---YSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTL- 149 (400)
T ss_pred ccccEEEEEeCCCCceEEEcccccC---CCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEE-
Confidence 111112222211 11111110000 011257899999999999999884 8999999999999876443 23333
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEecc
Q psy14497 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGW 251 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (561)
++|.++++|+||+|||.+|.+|+. ++++........ ..+...+... ....+...+.+
T Consensus 150 --------------~~g~~i~a~lvVgADG~~S~vR~~----~~~~~~~~~~~~-~~~~~~v~~~--~~~~~~~~~~~-- 206 (400)
T PRK08013 150 --------------KDGSMLTARLVVGADGANSWLRNK----ADIPLTFWDYQH-HALVATIRTE--EPHDAVARQVF-- 206 (400)
T ss_pred --------------cCCCEEEeeEEEEeCCCCcHHHHH----cCCCccccccCc-EEEEEEEecc--CCCCCEEEEEE--
Confidence 346689999999999999999998 455442211111 1111112211 11222222222
Q ss_pred CCCCCCCceEEEEEcCCC-eEEEEEEecCCCCC-CCCChHHHHH-HhhhChhHHHhhcCCeeeeecceeeccCCCccCCe
Q psy14497 252 PLDYKTYGGGFLYHMENN-QISIGYIISLDYKN-PYLSPFEEFQ-RYKTHPKICKILKGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 252 p~~~~~~g~~~~~~~~~~-~~~vg~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
...+..+++|..++ ..++.+....+... ......+.+. .+.. .+.+.+...+.... ...++... ...++
T Consensus 207 ----~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~~~~~~-~~~~~l~~-~~~~~ 278 (400)
T PRK08013 207 ----HGDGILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAI--AFDNRLGLCELESE-RQVFPLTG-RYARQ 278 (400)
T ss_pred ----cCCCCEEEEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHH--HHhHhhCceEecCC-ccEEecce-eeccc
Confidence 12233456677544 34555544321100 0000111221 1110 01111211111110 01111111 13568
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC-Ccc-c-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN-KFN-K-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 329 ~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~-~~~-~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|+.+|++|+|||||.++|+.|||+|+||+||..||+.|...+..+. ... . |++|+++++.. +...+..++.+.++|
T Consensus 279 ~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~l~ 357 (400)
T PRK08013 279 FAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHS-AALMLAGMQGFRDLF 357 (400)
T ss_pred ccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999988765443 222 3 99999987754 445555555555555
No 9
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.97 E-value=1.3e-29 Score=260.64 Aligned_cols=328 Identities=20% Similarity=0.296 Sum_probs=202.9
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC-CCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG-SELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~-~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
|||+||||||||+++|+.|++. |++|+|+|+. +.+ ..+|+.+.+..++++ +... ....... ....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~------G~~V~l~E~~~~~~---~~cg~~i~~~~l~~l-~i~~--~~~~~~~--~~~~ 66 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA------GIETILLERALSNI---KPCGGAIPPCLIEEF-DIPD--SLIDRRV--TQMR 66 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCCCCc---CcCcCCcCHhhhhhc-CCch--HHHhhhc--ceeE
Confidence 7999999999999999999999 9999999998 322 236666776655443 1110 0000011 1112
Q ss_pred hhcCCCC-cccCCCCCCceeecCCcE--EeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccC
Q psy14497 102 FLSSKKS-YKIPSWILPICFKNHGNY--IISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKE 178 (561)
Q Consensus 102 ~~~~~~~-~~~~~~~~p~~~~~~~~~--~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~ 178 (561)
+.+..+. ... ..+. ...| .++|..|+++|.+.+.+.|++++.+ .|+++..++++ +.|.+.+.....+
T Consensus 67 ~~~~~~~~~~~---~~~~----~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~ 136 (388)
T TIGR02023 67 MISPSRVPIKV---TIPS----EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAG 136 (388)
T ss_pred EEcCCCceeee---ccCC----CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCC
Confidence 2222111 111 1111 1223 5999999999999999999999766 58888765332 3454432000001
Q ss_pred CceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCC--ccCCCcEEEEeccCCCCC
Q psy14497 179 GIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPK--LHKKGLVIHTIGWPLDYK 256 (561)
Q Consensus 179 g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~ 256 (561)
|+ ..+++||+||+|||.+|.+++. +++.. +..+..+++..+..+.. .+.++....+++.+. .
T Consensus 137 ~~-------~~~i~a~~VI~AdG~~S~v~r~----lg~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 200 (388)
T TIGR02023 137 GE-------KGSVEADVVIGADGANSPVAKE----LGLPK---NLPRVIAYQERIKLPDDKMAYYEELADVYYGGEV--S 200 (388)
T ss_pred Cc-------ceEEEeCEEEECCCCCcHHHHH----cCCCC---CCcEEEEEEEEecCCchhcccCCCeEEEEECCCc--C
Confidence 11 2479999999999999999887 55543 12233556655544431 123333322333322 2
Q ss_pred CCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEE
Q psy14497 257 TYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAF 336 (561)
Q Consensus 257 ~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 336 (561)
..++.|++|.+ +...+|...... .....+.++.+..+.. +...+.+......+|. ...+++..+++++
T Consensus 201 p~~y~wv~P~~-~~~~vg~~~~~~----~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~ip~---~~~~~~~~~~v~l 268 (388)
T TIGR02023 201 PDFYGWVFPKG-DHIAVGTGTGTH----GFDAKQLQANLRRRAG----LDGGQTIRREAAPIPM---KPRPRWDFGRAML 268 (388)
T ss_pred CCceEEEeeCC-CeeEEeEEECCC----CCCHHHHHHHHHHhhC----CCCceEeeeeeEeccc---cccccccCCCEEE
Confidence 33578999986 567787654211 1223344444433211 3333444433344554 2356777899999
Q ss_pred EecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchh
Q psy14497 337 IGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPA 404 (561)
Q Consensus 337 vGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~ 404 (561)
+|||||.++|++|+|+++||.+|.++|++|.+++..++ ...|+.|++.|++.+ .+.+...+....+
T Consensus 269 vGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~-~~~L~~Y~~~~~~~~-~~~~~~~~~~~~~ 334 (388)
T TIGR02023 269 VGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGD-ATDLRHYERKFMKLY-GTTFRVLRVLQMV 334 (388)
T ss_pred EeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987543 233999999999774 4555544444433
No 10
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.97 E-value=1.1e-29 Score=271.81 Aligned_cols=342 Identities=14% Similarity=0.111 Sum_probs=196.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccchh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIEE 98 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~~ 98 (561)
++.+||+||||||+||++|+.|++. |++|+||||.+.+.... .+..+.++.++.+ ..++ ............
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~------G~~v~v~Er~~~~~~~~-ra~~l~~~~~~~L-~~lGl~~~l~~~~~~~~ 79 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY------GVRVLVLERWPTLYDLP-RAVGIDDEALRVL-QAIGLADEVLPHTTPNH 79 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCC-ceeeeCHHHHHHH-HHcCChhHHHhhcccCC
Confidence 4679999999999999999999999 99999999998764322 3445666665422 2222 000000111111
Q ss_pred hhhhhcCCCCcccCCCCCCc--eeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14497 99 RFLFLSSKKSYKIPSWILPI--CFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
.+.+.+..+..... +..+. .......+.++|..+++.|.+.+.+ .|++++++++|+++++++++ +.|.+.+
T Consensus 80 ~~~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~--- 153 (538)
T PRK06183 80 GMRFLDAKGRCLAE-IARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTD--- 153 (538)
T ss_pred ceEEEcCCCCEEEE-EcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEc---
Confidence 22233222211110 00010 0000124568899999999999887 49999999999999886554 3344421
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCC--CccccceeEEEEeeCCCccCCCcEEEEeccCC
Q psy14497 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKD--PQTYSLGIKELWTINPKLHKKGLVIHTIGWPL 253 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 253 (561)
.+|+ ..++++|+||+|||.+|.+|+. +++..... ...+ +.+ . +...............+
T Consensus 154 -~~G~-------~~~i~ad~vVgADG~~S~vR~~----lg~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~---- 214 (538)
T PRK06183 154 -ADGQ-------RETVRARYVVGCDGANSFVRRT----LGVPFEDLTFPERW-LVV-D-VLIANDPLGGPHTYQYC---- 214 (538)
T ss_pred -CCCC-------EEEEEEEEEEecCCCchhHHHH----cCCeeeCCCccceE-EEE-E-EecccCccCCCceEEEE----
Confidence 1221 1479999999999999999988 44433211 1111 110 1 11111111111111111
Q ss_pred CCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhc---CCeeeeecceeeccCCCccCCeee
Q psy14497 254 DYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILK---GGKRISYGARTITTGGLQSLPEFI 330 (561)
Q Consensus 254 ~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~ 330 (561)
...+...++|..++...+.+....+.........+.++++. ..+.. ..+..... .........++|.
T Consensus 215 --~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~ 284 (538)
T PRK06183 215 --DPARPYTSVRLPHGRRRWEFMLLPGETEEQLASPENVWRLL-----APWGPTPDDAELIRHA---VYTFHARVADRWR 284 (538)
T ss_pred --CCCCCEEEEEcCCCeEEEEEEeCCCCChhhcCCHHHHHHHH-----HhhCCCCcceEEEEEE---eeeEccEEhhhhc
Confidence 12223445676666655555443221111111112222221 11110 01111111 1111112246788
Q ss_pred cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 331 FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 331 ~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
.+||+|+|||||.++|+.|||+|+||+||..||+.|+..+.+......|..|+++++.. +.+.+..++.+.+++
T Consensus 285 ~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~-~~~~~~~s~~~~~~~ 358 (538)
T PRK06183 285 SGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPH-ARAMIDLAVRLGRVI 358 (538)
T ss_pred cCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHhhhhc
Confidence 89999999999999999999999999999999999987765433323399999999875 566677777766666
No 11
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=1.9e-29 Score=259.21 Aligned_cols=337 Identities=17% Similarity=0.240 Sum_probs=206.9
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
+||+||||||||+++|+.|++. |++|+|+||....+ . .+|+.+.+..+.++ +.+. ....... ..+.+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~------G~~V~llE~~~~~~-~-~cg~~i~~~~l~~~-g~~~--~~~~~~i--~~~~~ 67 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA------GIQTFLLERKPDNA-K-PCGGAIPLCMVDEF-ALPR--DIIDRRV--TKMKM 67 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCcEEEEecCCCCC-C-CccccccHhhHhhc-cCch--hHHHhhh--ceeEE
Confidence 6999999999999999999999 99999999986543 2 25666655554432 1110 0000000 11111
Q ss_pred hcCCCCcccCCCCCCceeecCC-cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEc-CCCCEEEEEecccc-cccCC
Q psy14497 103 LSSKKSYKIPSWILPICFKNHG-NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYD-SKNNVCGIATNNFG-INKEG 179 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~-~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~-~~g~v~~V~~~~~~-~~~~g 179 (561)
.++.+ .... +.......+ .+.++|..|+++|.+.+.+.|++++.++ +.++... ..+..++|+..... ....|
T Consensus 68 ~~p~~-~~~~---~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g 142 (398)
T TIGR02028 68 ISPSN-IAVD---IGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSG 142 (398)
T ss_pred ecCCc-eEEE---eccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCC
Confidence 11111 1110 000000111 2469999999999999999999998885 6666432 12334455532110 00012
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCc--cCCCcEEEEeccCCCCCC
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKL--HKKGLVIHTIGWPLDYKT 257 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~ 257 (561)
+ ..+++||+||+|||.+|.+++. +++.. ..+...+...++.+... +........++-.. .+
T Consensus 143 ~-------~~~i~a~~VIgADG~~S~v~~~----~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~p 205 (398)
T TIGR02028 143 T-------RCTLEVDAVIGADGANSRVAKE----IDAGD----YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDV--SP 205 (398)
T ss_pred C-------ccEEEeCEEEECCCcchHHHHH----hCCCC----cceEEEEEEEeeCChhhcccCCCeEEEEeCCCC--CC
Confidence 1 2479999999999999999888 45432 12334555445544321 22233322222111 24
Q ss_pred CceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEE
Q psy14497 258 YGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFI 337 (561)
Q Consensus 258 ~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lv 337 (561)
.++.|+||.++ .+.||...... . ...+.+..+.... ....+.+++.++.....+|.+ ..+++..+|++++
T Consensus 206 ~gY~WifP~~~-~~~VG~g~~~~----~-~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ip~~---~~~~~~~~~~llv 275 (398)
T TIGR02028 206 DFYGWVFPKCD-HVAVGTGTVAA----K-PEIKRLQSGIRAR-AAGKVAGGRIIRVEAHPIPEH---PRPRRVVGRVALV 275 (398)
T ss_pred CceEEEEECCC-eEEEEEEeCCC----C-ccHHHHHHhhhhh-hhhccCCCcEEEEEEEecccc---ccccEECCCEEEE
Confidence 45799999874 56788753211 1 1223333322111 122233445555555556653 2467888999999
Q ss_pred ecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC--Cccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 338 GCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN--KFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 338 GDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~--~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|||||.++|++|+|+++||.+|.+||+++.+++..++ .+.. |+.|++.|++. +.++++....++++|
T Consensus 276 GDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~-~~~~~~~~~~~~~~~ 345 (398)
T TIGR02028 276 GDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKE-YRPTYRVLDLLQRVF 345 (398)
T ss_pred EcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887654 2334 99999999876 367777777777666
No 12
>PRK08244 hypothetical protein; Provisional
Probab=99.97 E-value=1.5e-29 Score=268.44 Aligned_cols=325 Identities=15% Similarity=0.163 Sum_probs=189.0
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhcccccc-CCccccccchhh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIEER 99 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~ 99 (561)
|++||+||||||+||++|+.|++. |++|+||||.+.+.. ...+..+.+++++-+ ..++. ............
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viEr~~~~~~-~~ra~~l~~~~~e~l-~~lGl~~~l~~~~~~~~~ 72 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALA------GVKTCVIERLKETVP-YSKALTLHPRTLEIL-DMRGLLERFLEKGRKLPS 72 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCC-CcceeEecHHHHHHH-HhcCcHHHHHhhcccccc
Confidence 569999999999999999999999 999999999987532 224566777776532 33220 000000000000
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
..+........+.. .+. .....+.++|..+.+.|.+.+.+.|++++++++++++..++++ +.|.+.+ .+|
T Consensus 73 ~~~~~~~~~~~~~~--~~~--~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~----~~g 142 (493)
T PRK08244 73 GHFAGLDTRLDFSA--LDT--SSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG--VEVVVRG----PDG 142 (493)
T ss_pred eEEecccccCCccc--CCC--CCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe--EEEEEEe----CCc
Confidence 11111111111110 110 0122567899999999999998899999999999999876443 2333321 111
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCCc
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYG 259 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 259 (561)
..++++|+||+|||.+|.+|+. +++........+ .++...+..... ........+ ...+
T Consensus 143 --------~~~i~a~~vVgADG~~S~vR~~----lgi~~~g~~~~~-~~~~~~~~~~~~--~~~~~~~~~------~~~g 201 (493)
T PRK08244 143 --------LRTLTSSYVVGADGAGSIVRKQ----AGIAFPGTDATF-TAMLGDVVLKDP--PPSSVLSLC------TREG 201 (493)
T ss_pred --------cEEEEeCEEEECCCCChHHHHh----cCCCccCCCcce-EEEEEEEEecCC--CCcceeEEE------eCCc
Confidence 1479999999999999999887 555432221111 112111222111 111122221 2334
Q ss_pred eEEEEEcCCCeEEEEEEecCCCC---CCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEE
Q psy14497 260 GGFLYHMENNQISIGYIISLDYK---NPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAF 336 (561)
Q Consensus 260 ~~~~~~~~~~~~~vg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 336 (561)
..+++|.+++...+.+....... ....+..+..+.+... +...+......... .++. .....++|..+||+|
T Consensus 202 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~--~~~~-~~~~a~~~~~gRv~L 276 (493)
T PRK08244 202 GVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRI--CGTDFGLNDPVWMS--RFGN-ATRQAERYRSGRIFL 276 (493)
T ss_pred eEEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHh--hCCCCCcCCeeEEE--eccc-ceeeHhhhccCcEEE
Confidence 56788998887776554322111 1112222222222111 00001000111000 0110 112345778899999
Q ss_pred EecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhc
Q psy14497 337 IGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQAS 389 (561)
Q Consensus 337 vGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~ 389 (561)
+|||||.++|+.|||+|+||+||..||+.|+..+++......|+.|+++++..
T Consensus 277 ~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~ 329 (493)
T PRK08244 277 AGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPV 329 (493)
T ss_pred eecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHH
Confidence 99999999999999999999999999999999885433322399999988753
No 13
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=7.2e-30 Score=261.31 Aligned_cols=330 Identities=15% Similarity=0.151 Sum_probs=190.5
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc---eeecceeChhhHHhh--ccccccCCccccccch
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH---ILSGAIIDPRSIFEL--FPKEKLNKLFNTPVIE 97 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~---~~~G~~~~~~~l~~l--~~~~~~~~~~~~~~~~ 97 (561)
+||+||||||+|+++|+.|++. |++|+|+|+.+..... ...+..+.+.++.-+ ++.|..-.....+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~-- 73 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK------GIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEM-- 73 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC------CCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCC--
Confidence 7999999999999999999999 9999999987532211 124556777764432 33333000001111
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
..+.+.+..+..... ++.......+|.++|.+|.+.|.+++.+.+ ++++++++++++..++++ +.|.+
T Consensus 74 ~~~~~~~~~g~~~~~---~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~------ 142 (374)
T PRK06617 74 QDIYVVDNKASEILD---LRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKF------ 142 (374)
T ss_pred cEEEEEECCCceEEE---ecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEE------
Confidence 112222222211111 111011123789999999999999998864 999999999999875443 23444
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCC
Q psy14497 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYK 256 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 256 (561)
.++ ++++|+||+|||.+|.+|+. ++......+ |-.++. +.++......+..+..+ .
T Consensus 143 ---------~~~-~~~adlvIgADG~~S~vR~~----l~~~~~~~~--y~~~~~--~~v~~~~~~~~~~~~~~------~ 198 (374)
T PRK06617 143 ---------DDK-QIKCNLLIICDGANSKVRSH----YFANEIEKP--YQTALT--FNIKHEKPHENCAMEHF------L 198 (374)
T ss_pred ---------cCC-EEeeCEEEEeCCCCchhHHh----cCCCccccc--CCeEEE--EEEeccCCCCCEEEEEe------c
Confidence 234 89999999999999999887 444332111 112222 22222212222222222 1
Q ss_pred CCceEEEEEcCCCe-EEEEEEecCCCCCC-CCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCE
Q psy14497 257 TYGGGFLYHMENNQ-ISIGYIISLDYKNP-YLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGG 334 (561)
Q Consensus 257 ~~g~~~~~~~~~~~-~~vg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 334 (561)
..|..+++|..++. ..+.+....+..+. ...+.+.+..... +.+.+.+.. .........++... ...++|+.+|+
T Consensus 199 ~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-i~~~~~~~~~~l~~-~~~~~~~~grv 275 (374)
T PRK06617 199 PLGPFALLPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQ-RNAGNSLGK-ITIDSEISSFPLKA-RIANRYFHNRI 275 (374)
T ss_pred CCCCEEEeECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHH-HhhchhcCc-eeeccceeEEEeee-eeccceecCCE
Confidence 22335677887664 34444432110000 0001122222111 111111211 00111111222211 13568999999
Q ss_pred EEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhhh
Q psy14497 335 AFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMK 406 (561)
Q Consensus 335 ~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~ 406 (561)
+|+|||||.++|+.|||+|+||+|+..||+.|.. ...|++|++.++.. ....+..++.+.++|.
T Consensus 276 ~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~-------~~~L~~Ye~~R~~~-~~~~~~~t~~l~~~f~ 339 (374)
T PRK06617 276 VLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN-------NGTLQEYQKLRQED-NFIMYKLTDELNNIFS 339 (374)
T ss_pred EEEEcccccCCCCccccHHHHHHHHHHHHHHHcC-------cchHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999988721 12499999999865 5566777777777663
No 14
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=3.3e-29 Score=248.76 Aligned_cols=294 Identities=20% Similarity=0.263 Sum_probs=190.8
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
|||+|||||||||++|+.|++. |++|+|+||.+.++. ..++..+.++.+..+ ..+.. .... ......+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~------g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l-~~~~~-~~~~---~~~~~~~ 68 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK------GLRVLLLEKKSFPRY-KPCGGALSPRVLEEL-DLPLE-LIVN---LVRGARF 68 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCc-ccccCccCHhHHHHh-cCCch-hhhh---heeeEEE
Confidence 6999999999999999999999 999999999988764 445666777666543 11110 0000 0011111
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
+...+.. .. ...+ ....+.++|.+|.+.|.+.+.+.|++++++++|+++..++++ +.+.+.+
T Consensus 69 ~~~~~~~-~~-~~~~----~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~--~~~~~~~---------- 130 (295)
T TIGR02032 69 FSPNGDS-VE-IPIE----TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR--VVVIVRG---------- 130 (295)
T ss_pred EcCCCcE-EE-eccC----CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE--EEEEEcC----------
Confidence 1111110 00 0011 133678999999999999999999999999999999775443 2233311
Q ss_pred cccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCCceEE
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYGGGF 262 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~ 262 (561)
++.++++|+||+|||.+|.++++ +++... +.....++...+..+..............+.. ...+..|
T Consensus 131 ----~~~~~~a~~vv~a~G~~s~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 198 (295)
T TIGR02032 131 ----GEGTVTAKIVIGADGSRSIVAKK----LGLRKE--PRELGVAARAEVEMPDEEVDEDFVEVYIDRGI--SPGGYGW 198 (295)
T ss_pred ----ccEEEEeCEEEECCCcchHHHHh----cCCCCC--CcceeeEEEEEEecCCcccCcceEEEEcCCCc--CCCceEE
Confidence 13579999999999999998886 555432 22333455444544432223332222222211 1245688
Q ss_pred EEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhh-hChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEEecCC
Q psy14497 263 LYHMENNQISIGYIISLDYKNPYLSPFEEFQRYK-THPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFIGCNA 341 (561)
Q Consensus 263 ~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA 341 (561)
++|.+++.+.+++...... +..+..+.++.+. ..|. +...+..+.....++... ..+++..+|++++||||
T Consensus 199 ~~P~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~liGDAA 270 (295)
T TIGR02032 199 VFPKGDGTANVGVGSRSAE--EGEDLKKYLKDFLARRPE----LKDAETVEVIGAPIPIGR--PDDKTVRGNVLLVGDAA 270 (295)
T ss_pred EEeCCCCeEEEeeeeccCC--CCCCHHHHHHHHHHhCcc----cccCcEEeeeceeeccCC--CCCccccCCEEEEeccc
Confidence 9999888899988765432 3445667777665 3332 333444443333344322 35577889999999999
Q ss_pred ccCCCcccccchHHHHHHHHHHHHH
Q psy14497 342 GFMNVSRIKGIHTSIKSGILVADSI 366 (561)
Q Consensus 342 ~~~~P~~g~G~~~Ai~~a~~lA~~l 366 (561)
|+++|+.|||+++||+||..||+.|
T Consensus 271 ~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 271 GHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999864
No 15
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.97 E-value=2e-30 Score=264.56 Aligned_cols=331 Identities=20% Similarity=0.251 Sum_probs=179.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccc--cchh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTP--VIEE 98 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~--~~~~ 98 (561)
++||+|||||||||++|+.|++. |++|+||||.+.+.... .|..+.+.++.. +..++ ........ ....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~~~~~~~-~~~~l~~~~~~~-l~~lgl~~~~~~~~~~~~~~ 72 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA------GIDVTIIERRPDPRPKG-RGIGLSPNSLRI-LQRLGLLDEILARGSPHEVM 72 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT------TCEEEEEESSSSCCCSS-SSEEEEHHHHHH-HHHTTEHHHHHHHSEEECEE
T ss_pred CceEEEECCCHHHHHHHHHHHhc------ccccccchhcccccccc-cccccccccccc-cccccchhhhhhhcccccce
Confidence 48999999999999999999999 99999999998875433 466677776543 22222 00000000 0000
Q ss_pred hhhhhcC--CCCccc--C--CCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecc
Q psy14497 99 RFLFLSS--KKSYKI--P--SWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNN 172 (561)
Q Consensus 99 ~~~~~~~--~~~~~~--~--~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 172 (561)
...+... ...... + ...+.........+.+.|..|.+.|.+.+++.|++++++++++++..++++..+.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~- 151 (356)
T PF01494_consen 73 RIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDG- 151 (356)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEET-
T ss_pred eeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccc-
Confidence 0000000 000000 0 00000001123367899999999999999999999999999999987755433323321
Q ss_pred cccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEE-EeeCCCccCCC-cEEEEec
Q psy14497 173 FGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKEL-WTINPKLHKKG-LVIHTIG 250 (561)
Q Consensus 173 ~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 250 (561)
.+|+ ..+++||+||+|||.+|.+|++ ++.........+...+..+ ..........+ ..++.
T Consensus 152 ----~~g~-------~~~i~adlvVgADG~~S~vR~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (356)
T PF01494_consen 152 ----EDGE-------EETIEADLVVGADGAHSKVRKQ----LGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYS-- 214 (356)
T ss_dssp ----CTCE-------EEEEEESEEEE-SGTT-HHHHH----TTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEE--
T ss_pred ----cCCc-------eeEEEEeeeecccCcccchhhh----ccccccCcccccccccccccccccccccccccccccc--
Confidence 1222 2479999999999999999988 4433211111111111111 11111111122 11111
Q ss_pred cCCCCCCCceEEEEEcCC-CeEEEEEEecCCCCCCCCC----hHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCcc
Q psy14497 251 WPLDYKTYGGGFLYHMEN-NQISIGYIISLDYKNPYLS----PFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQS 325 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~-~~~~vg~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 325 (561)
...++.+++|..+ +...+.+....+....... ..+.++.+... +................++ ...
T Consensus 215 -----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~ 284 (356)
T PF01494_consen 215 -----PPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEI--FGPDLLETEIDEISAWPIP---QRV 284 (356)
T ss_dssp -----ETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHH--HHTCHHHHEEEEEEEEEEE---EEE
T ss_pred -----ccccceeEeeccCCccceEEEeeecccccccccccccccccccccccc--ccccccccccccccccccc---ccc
Confidence 2233346788766 3333333333332221111 11222222111 1111100111111111111 112
Q ss_pred CCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhc
Q psy14497 326 LPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQAS 389 (561)
Q Consensus 326 ~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~ 389 (561)
.++|..+||+|+|||||.|+|+.|||+|+||+||..||+.|...+.+ ....+ |+.|+++|+..
T Consensus 285 ~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g-~~~~~~l~~Y~~~r~~~ 348 (356)
T PF01494_consen 285 ADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKG-EASEEALKAYEQERRPR 348 (356)
T ss_dssp ESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred ccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999998763 33344 99999998865
No 16
>PRK07538 hypothetical protein; Provisional
Probab=99.97 E-value=4.2e-29 Score=259.25 Aligned_cols=336 Identities=16% Similarity=0.173 Sum_probs=187.6
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhcccccc-CCccccccchhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~ 101 (561)
.||+|||||||||++|+.|++. |++|+||||.+.++. ...|..+.|.+++.+ ..+.. ............+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~-~g~gi~l~p~~~~~L-~~lgl~~~l~~~~~~~~~~~ 72 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR------GIEVVVFEAAPELRP-LGVGINLLPHAVREL-AELGLLDALDAIGIRTRELA 72 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCcccc-cCcceeeCchHHHHH-HHCCCHHHHHhhCCCCcceE
Confidence 3899999999999999999999 999999999987652 234555667665532 22220 00000111111222
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CC-CEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MG-IDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+.+..+........-.........+.++|..|.+.|.+.+.+ .| ++++++++|+++..++++.++.+... .+|
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~-----~~g 147 (413)
T PRK07538 73 YFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDR-----AGG 147 (413)
T ss_pred EEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEecc-----CCC
Confidence 222222111100000000011225679999999999999866 46 57999999999987655533333221 111
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccc-c-ceeEEEEeeCCCccCCCcEEEEeccCCCCCC
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTY-S-LGIKELWTINPKLHKKGLVIHTIGWPLDYKT 257 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 257 (561)
++.+++||+||+|||.+|.+|+.+. .... +..+ + ..+......+ .+..+.....++. .
T Consensus 148 -------~~~~~~adlvIgADG~~S~vR~~l~----~~~~--~~~~~g~~~~~~~~~~~--~~~~~~~~~~~g~-----~ 207 (413)
T PRK07538 148 -------DLVSVRGDVLIGADGIHSAVRAQLY----PDEG--PPRWNGVMMWRGVTEAP--PFLTGRSMVMAGH-----L 207 (413)
T ss_pred -------ccceEEeeEEEECCCCCHHHhhhhc----CCCC--CCcccceEEEEEeecCc--cccCCCcEEEEcC-----C
Confidence 1358999999999999999998853 2210 1111 0 1111111111 1112211122111 1
Q ss_pred CceEEEEEcCCC-----eEEEEEEe--cCC---CC-----CCCCChHHHHHHhhhC----hhHHHhhcCC-eeeeeccee
Q psy14497 258 YGGGFLYHMENN-----QISIGYII--SLD---YK-----NPYLSPFEEFQRYKTH----PKICKILKGG-KRISYGART 317 (561)
Q Consensus 258 ~g~~~~~~~~~~-----~~~vg~~~--~~~---~~-----~~~~~~~~~~~~~~~~----~~~~~~l~~~-~~~~~~~~~ 317 (561)
.+..++||..+. ...+.+.. ..+ .. .......+.++.|... ..+.++++.. ....
T Consensus 208 ~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 282 (413)
T PRK07538 208 DGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYE----- 282 (413)
T ss_pred CCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceee-----
Confidence 122445565432 11222222 111 00 1112223333333321 1244445322 2211
Q ss_pred eccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhh
Q psy14497 318 ITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYK 397 (561)
Q Consensus 318 ~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~ 397 (561)
.+.....++++|+.+|++|+|||||.|+|+.|||+|+||+||..||+.|.+. ++...+|+.|++.|+.. +.+.+..
T Consensus 283 ~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~~~~aL~~Ye~~R~~~-~~~~~~~ 358 (413)
T PRK07538 283 YPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH---GDPEAALAAYEAERRPA-TAQIVLA 358 (413)
T ss_pred ccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhHH-HHHHHHH
Confidence 2222234577899999999999999999999999999999999999999763 33323499999999865 4455554
Q ss_pred hhc
Q psy14497 398 ARN 400 (561)
Q Consensus 398 ~~~ 400 (561)
++.
T Consensus 359 s~~ 361 (413)
T PRK07538 359 NRL 361 (413)
T ss_pred hhh
Confidence 444
No 17
>PRK06185 hypothetical protein; Provisional
Probab=99.97 E-value=3.4e-29 Score=260.08 Aligned_cols=345 Identities=15% Similarity=0.201 Sum_probs=200.7
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhh--ccccc-cCCcccccc
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL--FPKEK-LNKLFNTPV 95 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l--~~~~~-~~~~~~~~~ 95 (561)
..+++||+||||||+|+++|+.|++. |++|+|+|+.+..... ..+..+.+..+.-+ ++.|. ........
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~------G~~v~liE~~~~~~~~-~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~- 74 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARA------GVDVTVLEKHADFLRD-FRGDTVHPSTLELMDELGLLERFLELPHQK- 74 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCcc-ccCceeChhHHHHHHHcCChhHHhhcccce-
Confidence 34679999999999999999999999 9999999998654221 23455666554322 22232 00000001
Q ss_pred chhhhhhhcCCCCcccCCC-CCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEeccc
Q psy14497 96 IEERFLFLSSKKSYKIPSW-ILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNF 173 (561)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~ 173 (561)
...+.+...........+ ..+. .....+.+.+..+.+.|.+.+.+ .|++++++++|+++..+ ++.+.+|.+..
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~- 149 (407)
T PRK06185 75 -VRTLRFEIGGRTVTLADFSRLPT--PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRART- 149 (407)
T ss_pred -eeeEEEEECCeEEEecchhhcCC--CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEc-
Confidence 111222221111111000 0110 01225678999999999999877 48999999999999875 45555565521
Q ss_pred ccccCCceecccccC-eEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccC
Q psy14497 174 GINKEGIIKKNFQLG-MELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWP 252 (561)
Q Consensus 174 ~~~~~g~~~~~f~~g-~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 252 (561)
.+| .++++|+||+|||.+|.+|+. +++.....+... . + ....++..........+.+
T Consensus 150 ------------~~g~~~i~a~~vI~AdG~~S~vr~~----~gi~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~--- 207 (407)
T PRK06185 150 ------------PDGPGEIRADLVVGADGRHSRVRAL----AGLEVREFGAPM-D-V-LWFRLPREPDDPESLMGRF--- 207 (407)
T ss_pred ------------CCCcEEEEeCEEEECCCCchHHHHH----cCCCccccCCCc-e-e-EEEecCCCCCCCcccceEe---
Confidence 123 379999999999999999887 565543222111 1 1 1122222111111122221
Q ss_pred CCCCCCceEEEEEcCCCeEEEEEEecCCCCCC-CCChHHHH-HHhh-hChhHHHhhcCCeeeeecceeeccCCCccCCee
Q psy14497 253 LDYKTYGGGFLYHMENNQISIGYIISLDYKNP-YLSPFEEF-QRYK-THPKICKILKGGKRISYGARTITTGGLQSLPEF 329 (561)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (561)
...+..+++|.+ +.+++++..+.+.... .....+.+ +.+. ..|.+.+.+..-+.. .....++.. ....++|
T Consensus 208 ---~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~-~~~~~~~l~-~~~~~~~ 281 (407)
T PRK06185 208 ---GPGQGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSW-DDVKLLDVR-VDRLRRW 281 (407)
T ss_pred ---cCCcEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCc-cccEEEEEe-ccccccc
Confidence 223345566876 6778887765432211 11111222 2222 234444434221111 011111211 2235678
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 330 ~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
..+|++|+|||||.++|++|||+|+||+|+..||+.|.+.+..++.... |+.|++.|+.. ....+...+.+.++|
T Consensus 282 ~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 357 (407)
T PRK06185 282 HRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFP-TRVTQALQRRIQRRL 357 (407)
T ss_pred cCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhH-HHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999999999988866544334 99999988765 334444444444433
No 18
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=6.3e-29 Score=258.79 Aligned_cols=354 Identities=14% Similarity=0.119 Sum_probs=195.2
Q ss_pred cccCCCCCCCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeChhhHHhhccccc-c
Q psy14497 10 SLINKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIIDPRSIFELFPKEK-L 87 (561)
Q Consensus 10 ~~~~~~~~~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~~~~l~~l~~~~~-~ 87 (561)
+.+++.+-.....+||+|||||||||++|+.|++. |++|+||||++.+.... ..+..+.+.+++.+ ..++ .
T Consensus 6 ~~~~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L-~~lGl~ 78 (415)
T PRK07364 6 ATSPTLPSTRSLTYDVAIVGGGIVGLTLAAALKDS------GLRIALIEAQPAEAAAAKGQAYALSLLSARIF-EGIGVW 78 (415)
T ss_pred cCCCCCCCCCccccCEEEECcCHHHHHHHHHHhcC------CCEEEEEecCCccccCCCCcEEEechHHHHHH-HHCChh
Confidence 33333333455679999999999999999999999 99999999998764321 12345677665432 2222 0
Q ss_pred CCccccccchhhhhhhcCCCC--cccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCC
Q psy14497 88 NKLFNTPVIEERFLFLSSKKS--YKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNN 164 (561)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~ 164 (561)
............+.+.+..+. ..+.....+ ....++.+.+..|.+.|.+.+.+. |++++++++++++..++++
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~- 154 (415)
T PRK07364 79 EKILPQIGKFRQIRLSDADYPGVVKFQPTDLG---TEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA- 154 (415)
T ss_pred hhhHhhcCCccEEEEEeCCCCceeeeccccCC---CCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-
Confidence 000000001111111111111 111100011 011245555567999999988774 7999999999999775443
Q ss_pred EEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCc
Q psy14497 165 VCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGL 244 (561)
Q Consensus 165 v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (561)
+.|.+.+ +++ ..++++|+||+|||.+|.+|+. ++...... ..+...+...+..+ ......
T Consensus 155 -~~v~~~~-----~~~-------~~~i~adlvIgADG~~S~vR~~----~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~ 214 (415)
T PRK07364 155 -ATVTLEI-----EGK-------QQTLQSKLVVAADGARSPIRQA----AGIKTKGW-KYWQSCVTATVKHE--APHNDI 214 (415)
T ss_pred -eEEEEcc-----CCc-------ceEEeeeEEEEeCCCCchhHHH----hCCCceee-cCCCEEEEEEEEcc--CCCCCE
Confidence 3344421 010 1369999999999999999887 44433111 11111222222211 111222
Q ss_pred EEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCCC-C-CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCC
Q psy14497 245 VIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYK-N-PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGG 322 (561)
Q Consensus 245 ~~~~~~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (561)
..+.+ |+ .+..+++|.+++...+.+....+.. . ...+..+..+.+.. .+...+..-..+. .....+..
T Consensus 215 ~~~~~-~~-----~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~~- 284 (415)
T PRK07364 215 AYERF-WP-----SGPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQ--RYGDQLGKLELLG-DRFLFPVQ- 284 (415)
T ss_pred EEEEe-cC-----CCCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhhcCceecC-CCceecch-
Confidence 22221 21 2335677887777666544321100 0 01111121222111 1111111111111 01111211
Q ss_pred CccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcC-CCc--cchhhHHHHHhhchhhHhhhhhh
Q psy14497 323 LQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSN-NKF--NKLITYKTSFQASWLYKELYKAR 399 (561)
Q Consensus 323 ~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~-~~~--~~l~~y~~~~~~~~~~~~~~~~~ 399 (561)
....++|+.+|++|+|||||.++|+.|||+|+||+||..||+.|...+..+ +.. ..|+.|++.++.. ....++.++
T Consensus 285 ~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~ 363 (415)
T PRK07364 285 LMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRE-NWLILGFTD 363 (415)
T ss_pred hhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 123567888999999999999999999999999999999999998876433 332 2399999977754 444555666
Q ss_pred ccchhh
Q psy14497 400 NFKPAM 405 (561)
Q Consensus 400 ~~~~~~ 405 (561)
.+.+++
T Consensus 364 ~~~~~~ 369 (415)
T PRK07364 364 LLDRLF 369 (415)
T ss_pred HHHHHH
Confidence 566655
No 19
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.97 E-value=5.3e-29 Score=256.68 Aligned_cols=343 Identities=14% Similarity=0.099 Sum_probs=187.3
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC--CCceeecceeChhhHHhhcccccc-CCccccccch
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL--GAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIE 97 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~--g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~ 97 (561)
|.+||+||||||+||++|+.|++. |++|+|+||.+.. .... .+..+.+++++- +..++. ..........
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~-~a~~l~~~~~~~-l~~lGl~~~l~~~~~~~ 72 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLA------GIDSVVLERRSREYVEGRI-RAGVLEQGTVDL-LREAGVGERMDREGLVH 72 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhc------CCCEEEEEcCCcccccccc-ceeEECHhHHHH-HHHcCChHHHHhcCCcc
Confidence 578999999999999999999999 9999999999853 1222 234577776542 233331 0000001111
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccccccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINK 177 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~ 177 (561)
..+.+........+ .++....+.....++|..+.+.|.+.+.+.|++++++++++++... ++..+.|.+. .
T Consensus 73 ~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~-----~ 143 (392)
T PRK08243 73 DGIELRFDGRRHRI---DLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYE-----K 143 (392)
T ss_pred CcEEEEECCEEEEe---ccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEE-----c
Confidence 11222222111111 1111111122345678899999999988899999999999998752 2222334441 1
Q ss_pred CCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCC-CCccccceeEEEE-eeCCCccCCCcEEEEeccCCCC
Q psy14497 178 EGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKK-DPQTYSLGIKELW-TINPKLHKKGLVIHTIGWPLDY 255 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~ 255 (561)
+|+ ..++++|+||+|||.+|.+|+++ +..... ....+..++.... ..++ ......+. .
T Consensus 144 ~G~-------~~~i~ad~vVgADG~~S~vR~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~-- 203 (392)
T PRK08243 144 DGE-------EHRLDCDFIAGCDGFHGVSRASI----PAGALRTFERVYPFGWLGILAEAPP---VSDELIYA----N-- 203 (392)
T ss_pred CCe-------EEEEEeCEEEECCCCCCchhhhc----CcchhhceecccCceEEEEeCCCCC---CCCceEEe----e--
Confidence 221 13789999999999999999884 322211 1111112222111 1111 11111111 1
Q ss_pred CCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhC-h-hHHHhhcCCeeeeecceeeccCCCccCCeeecCC
Q psy14497 256 KTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTH-P-KICKILKGGKRISYGARTITTGGLQSLPEFIFDG 333 (561)
Q Consensus 256 ~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (561)
...+..++++.+++...+.+.................+.+... + .....+..+..... ...+.. ....++|+.+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~gr 280 (392)
T PRK08243 204 HERGFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEK--SIAPLR-SFVAEPMQYGR 280 (392)
T ss_pred CCCceEEEecCCCCcEEEEEEecCCCCcccCChhHHHHHHHHhcCcccccccccCccccc--cceeee-eceeccceeCC
Confidence 1222334444444444444433221111111121212222110 0 00000001111100 001110 11235677899
Q ss_pred EEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 334 GAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 334 v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
++|+|||||.++|+.|||+|+||+||..||+.|.+.++. .....|..|++.++.. +.+.++.++.+.+++
T Consensus 281 vvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~-~~~~~L~~Ye~~r~~r-~~~~~~~~~~~~~~~ 350 (392)
T PRK08243 281 LFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE-GDTALLDAYSATALRR-VWKAERFSWWMTSML 350 (392)
T ss_pred EEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999987754 3323499999998865 456666666666665
No 20
>PRK05868 hypothetical protein; Validated
Probab=99.97 E-value=7.1e-29 Score=253.11 Aligned_cols=339 Identities=11% Similarity=0.097 Sum_probs=187.1
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcc-ccccchhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLF-NTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~ 101 (561)
.||+||||||+||++|+.|++. |++|+|||+.+.++. ...+..+.+.+++ .+..++....+ ........+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~------G~~v~viE~~~~~~~-~g~~i~~~~~a~~-~L~~lGl~~~~~~~~~~~~~~~ 73 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRH------GYSVTMVERHPGLRP-GGQAIDVRGPALD-VLERMGLLAAAQEHKTRIRGAS 73 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCC-CceeeeeCchHHH-HHHhcCCHHHHHhhccCccceE
Confidence 4899999999999999999999 999999999987643 1122334455443 22222200000 0011111222
Q ss_pred hhcCCCCcccCC-CCCCce-eecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 102 FLSSKKSYKIPS-WILPIC-FKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 102 ~~~~~~~~~~~~-~~~p~~-~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+.+.++...... ...+.. ......+.+.|.+|.+.|.+.+ ..|++++++++|+++..++++ +.|.
T Consensus 74 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~---------- 140 (372)
T PRK05868 74 FVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGDS--VRVT---------- 140 (372)
T ss_pred EEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCCe--EEEE----------
Confidence 222222111100 000000 0012256789999999887654 468999999999999764222 3333
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCCc
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYG 259 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 259 (561)
|++|.++++|+||+|||.+|.+|+.+. +.... ....++ .....+.++.. ...... +. |-+ +...
T Consensus 141 -----~~dg~~~~adlvIgADG~~S~vR~~~~---~~~~~-~~~~~g-~~~~~~~~~~~-~~~~~~-~~--~~~--g~~~ 204 (372)
T PRK05868 141 -----FERAAAREFDLVIGADGLHSNVRRLVF---GPEEQ-FVKRLG-THAAIFTVPNF-LELDYW-QT--WHY--GDST 204 (372)
T ss_pred -----ECCCCeEEeCEEEECCCCCchHHHHhc---CCccc-ceeecc-eEEEEEEcCCC-CCCCcc-eE--EEe--cCCc
Confidence 455678999999999999999998853 22211 111111 11222223321 111111 11 101 1111
Q ss_pred eEEEEEcCCC-eEEEEEEecCCC--CCCCC--ChHHHH-HHhhh--C--hhHHHhhcCCeeeeecceeeccCCCccCCee
Q psy14497 260 GGFLYHMENN-QISIGYIISLDY--KNPYL--SPFEEF-QRYKT--H--PKICKILKGGKRISYGARTITTGGLQSLPEF 329 (561)
Q Consensus 260 ~~~~~~~~~~-~~~vg~~~~~~~--~~~~~--~~~~~~-~~~~~--~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (561)
...+||..++ .....+...... .+... ...+.+ +.|.. . +.+.+.+.......+ +......+++|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~-----~~~~~~~~~~w 279 (372)
T PRK05868 205 MAGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYF-----DEMSQILMDRW 279 (372)
T ss_pred EEEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceee-----ccceEEecCCC
Confidence 2335555432 322222221110 01000 111222 23321 1 333333332221111 11111245789
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhhh
Q psy14497 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMK 406 (561)
Q Consensus 330 ~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~ 406 (561)
+.+||+|+|||||.++|+.|||+|+||+||..||+.|... ..+...+|+.|++.++.. +.+.++..+.....|.
T Consensus 280 ~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~--~~~~~~al~~ye~~~~~~-~~~~q~~~~~~~~~~~ 353 (372)
T PRK05868 280 SRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--GDDYQLGFANYHAEFHGF-VERNQWLVSDNIPGGA 353 (372)
T ss_pred CCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhHH-HHHhhhhhhccCCccc
Confidence 9999999999999999999999999999999999999652 233434499999998754 5666777777777663
No 21
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.97 E-value=2e-28 Score=264.12 Aligned_cols=355 Identities=14% Similarity=0.105 Sum_probs=194.7
Q ss_pred CcccEEEECchhHHHHHHHHHHh-ccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcc-ccccchh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQ-LAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLF-NTPVIEE 98 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~-~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~-~~~~~~~ 98 (561)
.++||+||||||+||++|+.|++ . |++|+|||+.+.+. ....+..+.+++++-+ ..++....+ .......
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~------Gi~v~IiE~~~~~~-~~grA~gl~prtleiL-~~lGl~d~l~~~g~~~~ 102 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFP------DITTRIVERKPGRL-ELGQADGIACRTMEMF-QAFGFAERILKEAYWIN 102 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCC------CCcEEEEEcCCCCC-CCCeeeEEChHHHHHH-HhccchHHHHhhccccc
Confidence 36999999999999999999999 7 99999999987642 2224567788876633 332200000 0000101
Q ss_pred hhhhhcCCC----CcccCC--CCCCceeecCCcEEeeHHHHHHHHHHHHHHCC--CEEEcCceEeEEEEcCCC-CEEEEE
Q psy14497 99 RFLFLSSKK----SYKIPS--WILPICFKNHGNYIISLSDLVRWMGKKAENMG--IDIFSGFSASEILYDSKN-NVCGIA 169 (561)
Q Consensus 99 ~~~~~~~~~----~~~~~~--~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~G--v~i~~g~~v~~i~~~~~g-~v~~V~ 169 (561)
.+.+..... .+.... ...+..........++|..+++.|.+.+.+.| ++++++++++++..++++ ..+.|.
T Consensus 103 ~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~ 182 (634)
T PRK08294 103 ETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVT 182 (634)
T ss_pred ceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEE
Confidence 111111100 000000 00111111122467899999999999998765 578999999999876432 223454
Q ss_pred ecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEe
Q psy14497 170 TNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTI 249 (561)
Q Consensus 170 ~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (561)
+.+.....+|+ ..+++||+||+|||++|.+|++ +|+...........++..+..... +........+
T Consensus 183 l~~~~~~~~g~-------~~tv~A~~lVGaDGa~S~VR~~----lgi~~~G~~~~~~~~v~dv~~~~~--~p~~~~~~~~ 249 (634)
T PRK08294 183 LRRTDGEHEGE-------EETVRAKYVVGCDGARSRVRKA----IGRELRGDSANHAWGVMDVLAVTD--FPDIRLKCAI 249 (634)
T ss_pred EEECCCCCCCc-------eEEEEeCEEEECCCCchHHHHh----cCCCccCCcccceEEEEEEEEccC--CCCcceEEEE
Confidence 43210001221 1589999999999999999998 555443222212223333322111 1110111111
Q ss_pred ccCCCCCCCceEEEEEcCCCe-EEEEEEecC-CCC----CCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCC
Q psy14497 250 GWPLDYKTYGGGFLYHMENNQ-ISIGYIISL-DYK----NPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGL 323 (561)
Q Consensus 250 ~~p~~~~~~g~~~~~~~~~~~-~~vg~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (561)
+ ....|...++|.+++. +.+.+.... ... ....+..+..+.+... +.+....-..+.+. .....+.
T Consensus 250 -~---~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~--~~p~~~~~~~v~w~--s~y~i~~ 321 (634)
T PRK08294 250 -Q---SASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRI--LHPYTLDVKEVAWW--SVYEVGQ 321 (634)
T ss_pred -e---cCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHh--cCCCCCceeEEeEE--ecccccc
Confidence 1 0233445567887663 444332211 100 1122333333332210 01110000111111 0110001
Q ss_pred ccCCe----------eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhH
Q psy14497 324 QSLPE----------FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYK 393 (561)
Q Consensus 324 ~~~~~----------~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~ 393 (561)
+..++ +..+||+|+|||||.++|..|||+|++|+||..||+.|+..+++......|+.|+++|+.. ...
T Consensus 322 r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~-a~~ 400 (634)
T PRK08294 322 RLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAI-AQE 400 (634)
T ss_pred eehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHH
Confidence 11111 2358999999999999999999999999999999999999886544323399999999864 445
Q ss_pred hhhhhhccchhh
Q psy14497 394 ELYKARNFKPAM 405 (561)
Q Consensus 394 ~~~~~~~~~~~~ 405 (561)
.+...+.+.++|
T Consensus 401 li~~~~~~~~l~ 412 (634)
T PRK08294 401 LIDFDREWSTMM 412 (634)
T ss_pred HHHHHHHHHHHh
Confidence 556666666665
No 22
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.97 E-value=8.8e-29 Score=256.07 Aligned_cols=342 Identities=13% Similarity=0.144 Sum_probs=198.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcc-ccccchhh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLF-NTPVIEER 99 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~ 99 (561)
+..||+|||||||||++|+.|++. |++|+||||.+.++. ...|..+.+.++..+ ..++....+ ........
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~------g~~v~v~Er~~~~~~-~g~gi~l~~~~~~~l-~~lg~~~~~~~~~~~~~~ 74 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ------GIKVKLLEQAAEIGE-IGAGIQLGPNAFSAL-DALGVGEAARQRAVFTDH 74 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC------CCcEEEEeeCccccc-ccceeeeCchHHHHH-HHcCChHHHHhhccCCcc
Confidence 568999999999999999999999 999999999987653 224455667665432 333210000 01111112
Q ss_pred hhhhcCCCCcccCCCCCCcee---ecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14497 100 FLFLSSKKSYKIPSWILPICF---KNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~---~~~~~~~i~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
+.+.+...+..+.....+... .+...+.++|.+|.+.|.+.+.+. +++++++++|+++..++++ +.|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~----- 147 (396)
T PRK08163 75 LTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFD----- 147 (396)
T ss_pred eEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEE-----
Confidence 222221100000000011000 011245789999999999999876 4999999999999765332 33443
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCC--CccCCCcEEEEeccCC
Q psy14497 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINP--KLHKKGLVIHTIGWPL 253 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~ 253 (561)
.+|.++++|+||+|||.+|.+|+.+. +.+. ....+ ..+...+.... ........ +. |
T Consensus 148 ----------~~g~~~~ad~vV~AdG~~S~~r~~~~---g~~~--~~~g~-~~~~~~~~~~~~~~~~~~~~~-~~--~-- 206 (396)
T PRK08163 148 ----------QQGNRWTGDALIGCDGVKSVVRQSLV---GDAP--RVTGH-VVYRAVIDVDDMPEDLRINAP-VL--W-- 206 (396)
T ss_pred ----------cCCCEEecCEEEECCCcChHHHhhcc---CCCC--Ccccc-EEEEEEEeHHHCcchhccCcc-EE--E--
Confidence 33568999999999999999988742 3211 11111 22222222111 10011111 11 1
Q ss_pred CCCCCceEEEEEcCCCe-EEEEEEecCCCC----CCCCChHHHHHHhhh-ChhHHHhhcCCeeeeecceeeccCCCccCC
Q psy14497 254 DYKTYGGGFLYHMENNQ-ISIGYIISLDYK----NPYLSPFEEFQRYKT-HPKICKILKGGKRISYGARTITTGGLQSLP 327 (561)
Q Consensus 254 ~~~~~g~~~~~~~~~~~-~~vg~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 327 (561)
.+..+..+.+|..++. +.+.+....+.. .......+..+.|.. +|.+.++++....... ..+ ....+++
T Consensus 207 -~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~ 281 (396)
T PRK08163 207 -AGPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKR--WAT--ADREPVA 281 (396)
T ss_pred -EcCCceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCceeE--ccc--cCCCccc
Confidence 0223345567775443 333333322211 111233344445542 4666666643322111 111 1123466
Q ss_pred eeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhhh
Q psy14497 328 EFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMK 406 (561)
Q Consensus 328 ~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~ 406 (561)
+|+.+|++|+|||||.|+|+.|||+|+||+||..||+.|... ..+...+|+.|++.++.. +...++.++.+..+++
T Consensus 282 ~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~al~~y~~~R~~r-~~~~~~~s~~~~~~~~ 357 (396)
T PRK08163 282 KWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC--DGDAEAAFALYESVRIPR-TARVVLSAREMGRIYH 357 (396)
T ss_pred ccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhC
Confidence 888899999999999999999999999999999999998652 223333499999999865 5556666666666553
No 23
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.97 E-value=1.6e-28 Score=253.51 Aligned_cols=325 Identities=12% Similarity=0.093 Sum_probs=186.5
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee----ecceeChhhHHhh--ccccc-cCCccc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL----SGAIIDPRSIFEL--FPKEK-LNKLFN 92 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~----~G~~~~~~~l~~l--~~~~~-~~~~~~ 92 (561)
.+.+||+||||||+|+++|+.|++. |++|+||||.+.++.... ....+.+.+++-+ ++.|. ......
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~------G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA------GLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARA 77 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC------CCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhC
Confidence 4569999999999999999999999 999999999876532211 1123556654321 23232 100000
Q ss_pred cccchhhhhhhcCC--CCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEe
Q psy14497 93 TPVIEERFLFLSSK--KSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIAT 170 (561)
Q Consensus 93 ~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~ 170 (561)
... ..+.+.+.. ....++...+. ....+|.++|..|.+.|.+.+.+.|++++++++|+++..++++ +.|.+
T Consensus 78 ~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~ 150 (392)
T PRK08773 78 QPY--RRMRVWDAGGGGELGFDADTLG---REQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRL 150 (392)
T ss_pred Ccc--cEEEEEeCCCCceEEechhccC---CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEE
Confidence 011 111111111 11111111110 1122688999999999999999999999999999999865332 33444
Q ss_pred cccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEec
Q psy14497 171 NNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIG 250 (561)
Q Consensus 171 ~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (561)
++|.++++|+||+|||.+|.+++. +++......... .++...+....+ ..+..+..+
T Consensus 151 ---------------~~g~~~~a~~vV~AdG~~S~vr~~----~g~~~~~~~~~~-~~~~~~v~~~~~--~~~~~~~~~- 207 (392)
T PRK08773 151 ---------------DDGRRLEAALAIAADGAASTLREL----AGLPVSRHDYAQ-RGVVAFVDTEHP--HQATAWQRF- 207 (392)
T ss_pred ---------------CCCCEEEeCEEEEecCCCchHHHh----hcCCceEEEecc-EEEEEEEEccCC--CCCEEEEEe-
Confidence 235589999999999999998877 454432111111 122222222111 122222222
Q ss_pred cCCCCCCCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCe
Q psy14497 251 WPLDYKTYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
...+...++|.+++...+.+..+.+... ...+..+..+.+. ..+.+.+..-+.... ....+.. ....++
T Consensus 208 -----~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~-~~~~~l~-~~~~~~ 278 (392)
T PRK08773 208 -----LPTGPLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELT--QAFAARLGEVRVASP-RTAFPLR-RQLVQQ 278 (392)
T ss_pred -----CCCCcEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHH--HHHhhhhcCeEecCC-ccEeech-hhhhhh
Confidence 1223345678877777666654321100 0011111111111 111111111111100 0111211 223568
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcC-CCc-cc-hhhHHHHHhhc
Q psy14497 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSN-NKF-NK-LITYKTSFQAS 389 (561)
Q Consensus 329 ~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~-~~~-~~-l~~y~~~~~~~ 389 (561)
|..+|++|+|||||.++|+.|||+|+||+||..||+.|.+.+..+ +.. .. |++|+++++..
T Consensus 279 ~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~ 342 (392)
T PRK08773 279 YVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSD 342 (392)
T ss_pred hcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999877543 221 23 99999888754
No 24
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.97 E-value=1.3e-28 Score=254.21 Aligned_cols=339 Identities=14% Similarity=0.097 Sum_probs=198.9
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce----eecceeChhhHHhhccccc-cCCccc-cccch
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----LSGAIIDPRSIFELFPKEK-LNKLFN-TPVIE 97 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~----~~G~~~~~~~l~~l~~~~~-~~~~~~-~~~~~ 97 (561)
||+|||||||||++|+.|++. |++|+||||.+.++... ..+..+.+.++..+ ..++ ...... .....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~------G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l-~~lGl~~~~~~~~~~~~ 73 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS------GLKIALIEATPAEAAATPGFDNRVSALSAASIRLL-EKLGVWDKIEPDRAQPI 73 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC------CCEEEEEeCCCccccCCCCCCcceeecCHHHHHHH-HHCCchhhhhhhcCCCc
Confidence 799999999999999999999 99999999998764321 12345666655432 2222 111111 11111
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
..+.+.+..+...+. +..+.......++.++|..|.+.|.+.+.+.| ++++++++|+++..+++ . +.|.+
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~-~~v~~------ 144 (385)
T TIGR01988 74 RDIHVSDGGSFGALH-FDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-H-VELTL------ 144 (385)
T ss_pred eEEEEEeCCCCceEE-echhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-e-eEEEE------
Confidence 122222222111111 00000001123688999999999999998887 99999999999976533 2 33444
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCC
Q psy14497 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYK 256 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 256 (561)
++|.++++|+||+|||.+|.+|++ ++++....... ...+...+..+.. ........+ .
T Consensus 145 ---------~~g~~~~~~~vi~adG~~S~vr~~----l~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~------~ 202 (385)
T TIGR01988 145 ---------DDGQQLRARLLVGADGANSKVRQL----AGIPTTGWDYG-QSAVVANVKHERP--HQGTAWERF------T 202 (385)
T ss_pred ---------CCCCEEEeeEEEEeCCCCCHHHHH----cCCCccccccC-CeEEEEEEEecCC--CCCEEEEEe------c
Confidence 345679999999999999999887 45443211111 1222222222211 112221111 1
Q ss_pred CCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCE
Q psy14497 257 TYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGG 334 (561)
Q Consensus 257 ~~g~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 334 (561)
..+..+++|.+++...+.+........ ......+..+.+... +.+.+.... ........+. .....++|..+|+
T Consensus 203 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~v 278 (385)
T TIGR01988 203 PTGPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRA--FGSRLGAIT-LVGERHAFPL-SLTHAKRYVAPRL 278 (385)
T ss_pred CCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HhhhcCceE-eccCcceeec-hhhhhhheecCce
Confidence 223456779888877777665321100 011222222222210 111111100 0011111221 1123557888999
Q ss_pred EEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcC-CC--ccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 335 AFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSN-NK--FNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 335 ~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~-~~--~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
+|+|||||.++|+.|||+++||+||..||+.|...+..+ +. ...|+.|++.++.. +...+..++.+.+++
T Consensus 279 ~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~-~~~~~~~~~~~~~~~ 351 (385)
T TIGR01988 279 ALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFD-NAAMLGATDGLNRLF 351 (385)
T ss_pred EEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999876533 22 23399999999865 556667777777766
No 25
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.97 E-value=1.7e-28 Score=254.48 Aligned_cols=341 Identities=11% Similarity=0.079 Sum_probs=191.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc-------eeecceeChhhHHhhccccccCCccc-
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH-------ILSGAIIDPRSIFELFPKEKLNKLFN- 92 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~-------~~~G~~~~~~~l~~l~~~~~~~~~~~- 92 (561)
|++||+||||||+||++|+.|++. |++|+|||+.+..... ...+..+.+.+++ ++..++....+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~-~L~~lGl~~~l~~ 73 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGS------GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQR-ILERLGAWDGIAA 73 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcC------CCEEEEEcCCCccccccccCCCCCccchhhhHHHHH-HHHHCChhhhhhH
Confidence 568999999999999999999999 9999999998732110 0123345565544 222222000000
Q ss_pred c-ccchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14497 93 T-PVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 93 ~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
. ......+.+.+..+...+. +..........++.+++..|.+.|.+.+.+.|++++++++++++..++++ +.|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~- 149 (405)
T PRK05714 74 RRASPYSEMQVWDGSGTGQIH-FSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTL- 149 (405)
T ss_pred hhCccceeEEEEcCCCCceEE-ecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEE-
Confidence 0 0111122222222111111 00000000122578999999999999998889999999999999876443 33444
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEecc
Q psy14497 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGW 251 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (561)
++|.++++|+||+|||.+|.+|+. +++......... ..+...+..+. ......+..+
T Consensus 150 --------------~~g~~~~a~~vVgAdG~~S~vR~~----lg~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~-- 206 (405)
T PRK05714 150 --------------ADGRQLRAPLVVAADGANSAVRRL----AGCATREWDYLH-HAIVTSVRCSE--PHRATAWQRF-- 206 (405)
T ss_pred --------------CCCCEEEeCEEEEecCCCchhHHh----cCCCcccccCCc-eEEEEEEEcCC--CCCCEEEEEc--
Confidence 345689999999999999999887 454432211111 11111111111 1112222221
Q ss_pred CCCCCCCceEEEEEcCCC----eEEEEEEecCCCCCC--CCChHHHHHHhhhC--hhHHHhhcCCeeeeecceeeccCCC
Q psy14497 252 PLDYKTYGGGFLYHMENN----QISIGYIISLDYKNP--YLSPFEEFQRYKTH--PKICKILKGGKRISYGARTITTGGL 323 (561)
Q Consensus 252 p~~~~~~g~~~~~~~~~~----~~~vg~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (561)
...+..+++|..++ ...+.+....+..+. .....+..+.+... ..+.+++..... ...+.. .
T Consensus 207 ----~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~-~ 276 (405)
T PRK05714 207 ----TDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPR-----LCVPLR-Q 276 (405)
T ss_pred ----CCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCc-----cEEecc-e
Confidence 12233456676422 233333332110000 01111111111110 111111111111 111111 1
Q ss_pred ccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC-C-ccc-hhhHHHHHhhchhhHhhhhhhc
Q psy14497 324 QSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN-K-FNK-LITYKTSFQASWLYKELYKARN 400 (561)
Q Consensus 324 ~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~-~-~~~-l~~y~~~~~~~~~~~~~~~~~~ 400 (561)
...++|+.+|++|+|||||.++|+.|||+|+||+||..||+.|...+..+. . ... |+.|++.++.. +.+.++.++.
T Consensus 277 ~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~ 355 (405)
T PRK05714 277 RHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPH-NLALMAAMEG 355 (405)
T ss_pred eehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 236688999999999999999999999999999999999999987664432 2 123 99999999865 5666777777
Q ss_pred cchhhh
Q psy14497 401 FKPAMK 406 (561)
Q Consensus 401 ~~~~~~ 406 (561)
+.++|+
T Consensus 356 ~~~~~~ 361 (405)
T PRK05714 356 FERLFQ 361 (405)
T ss_pred HHHHHC
Confidence 777663
No 26
>PRK06753 hypothetical protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=253.20 Aligned_cols=333 Identities=17% Similarity=0.159 Sum_probs=197.0
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccchhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~ 101 (561)
.+|+|||||||||++|+.|++. |++|+||||.+.+.. ...|..+.+.++..+ ..++ .............+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~-~g~gi~l~~~~~~~L-~~~gl~~~~~~~~~~~~~~~ 72 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ------GHEVKVFEKNESVKE-VGAGIGIGDNVIKKL-GNHDLAKGIKNAGQILSTMN 72 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCcccc-cccceeeChHHHHHH-HhcChHHHHHhcCCccccee
Confidence 3799999999999999999999 999999999987643 234556777766543 2222 000000011112222
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+.+..+.. +....+. .....+.++|..|.+.|.+.+. +++++++++|+++..++ +. +.|.+
T Consensus 73 ~~~~~g~~-~~~~~~~---~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~-v~v~~----------- 133 (373)
T PRK06753 73 LLDDKGTL-LNKVKLK---SNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET-DK-VTIHF----------- 133 (373)
T ss_pred EEcCCCCE-Eeecccc---cCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC-Cc-EEEEE-----------
Confidence 33322221 1110110 1123678999999999998875 46899999999997653 32 33433
Q ss_pred ecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCcc-CCCcEEEEeccCCCCCCCce
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLH-KKGLVIHTIGWPLDYKTYGG 260 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~g~ 260 (561)
++|.++++|+||+|||.+|.+|+.+. .........+ ..+.... +.... ......+.+ ...+.
T Consensus 134 ----~~g~~~~~~~vigadG~~S~vR~~~~----~~~~~~~~g~-~~~~~~~--~~~~~~~~~~~~~~~------~~~g~ 196 (373)
T PRK06753 134 ----ADGESEAFDLCIGADGIHSKVRQSVN----ADSKVRYQGY-TCFRGLI--DDIDLKLPDCAKEYW------GTKGR 196 (373)
T ss_pred ----CCCCEEecCEEEECCCcchHHHHHhC----CCCCceEcce-EEEEEEe--ccccccCccceEEEE------cCCCE
Confidence 44668999999999999999998843 2221111111 1122111 21111 111122222 22345
Q ss_pred EEEEEcCCCeEEEEEEecCCCCCCCC--ChHHHHH-Hhhh-ChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEE
Q psy14497 261 GFLYHMENNQISIGYIISLDYKNPYL--SPFEEFQ-RYKT-HPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAF 336 (561)
Q Consensus 261 ~~~~~~~~~~~~vg~~~~~~~~~~~~--~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 336 (561)
.+++|..++...+.+....+...+.. ...+.+. .|.. .+.+.++++....... ...+.......++|..+|++|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~rv~L 274 (373)
T PRK06753 197 FGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGI--LHHDIYDLKPLKSFVYGRIVL 274 (373)
T ss_pred EEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCcccc--eeeccccccccccccCCCEEE
Confidence 66778877776665554322111111 1112222 2322 2445555532211100 011111223456788899999
Q ss_pred EecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhhh
Q psy14497 337 IGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMK 406 (561)
Q Consensus 337 vGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~ 406 (561)
+|||||.|+|+.|||+|+||+||..|++.|.. .+...+|+.|++.++.. +.+.++.++.+.+++.
T Consensus 275 iGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~----~~~~~al~~Y~~~r~~~-~~~~~~~s~~~~~~~~ 339 (373)
T PRK06753 275 LGDAAHATTPNMGQGAGQAMEDAIVLANCLNA----YDFEKALQRYDKIRVKH-TAKVIKRSRKIGKIAQ 339 (373)
T ss_pred EecccccCCCCcCccHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhHH-HHHHHHHHHHHhHHHh
Confidence 99999999999999999999999999998843 23323499999999876 5677777777777663
No 27
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.97 E-value=2.6e-28 Score=261.94 Aligned_cols=347 Identities=14% Similarity=0.128 Sum_probs=189.6
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcc-ccccc
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLF-NTPVI 96 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~-~~~~~ 96 (561)
..++.+||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+.+++++-+ ..++....+ .....
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viE~~~~~~~~-~ra~~l~~~~~~~l-~~lGl~~~l~~~~~~ 90 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQ------GVPVVLLDDDDTLSTG-SRAICFAKRSLEIF-DRLGCGERMVDKGVS 90 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEeCCCCCCCC-CeEEEEcHHHHHHH-HHcCCcHHHHhhCce
Confidence 345789999999999999999999999 9999999999865321 13445677765532 332200000 00000
Q ss_pred hhhhhhhcCCCCc-ccCCCCCCceee-cCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEeccc
Q psy14497 97 EERFLFLSSKKSY-KIPSWILPICFK-NHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNNF 173 (561)
Q Consensus 97 ~~~~~~~~~~~~~-~~~~~~~p~~~~-~~~~~~i~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~ 173 (561)
......+...+.. .+.. .+.... ....+.+.+..|++.|.+.+.+. +++++++++|+++..++++..+.++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~-- 166 (547)
T PRK08132 91 WNVGKVFLRDEEVYRFDL--LPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETP-- 166 (547)
T ss_pred eeceeEEeCCCeEEEecC--CCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECC--
Confidence 0000001111110 1110 000000 01144578999999999999874 799999999999987644422222221
Q ss_pred ccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCC
Q psy14497 174 GINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPL 253 (561)
Q Consensus 174 ~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 253 (561)
+| ..++++|+||+|||.+|.+|+. ++++...........+.. ...... . +......+..+.
T Consensus 167 ----~g--------~~~i~ad~vVgADG~~S~vR~~----lg~~~~g~~~~~~~~~~d-~~~~~~-~-~~~~~~~~~~~~ 227 (547)
T PRK08132 167 ----DG--------PYTLEADWVIACDGARSPLREM----LGLEFEGRTFEDRFLIAD-VKMKAD-F-PTERWFWFDPPF 227 (547)
T ss_pred ----CC--------cEEEEeCEEEECCCCCcHHHHH----cCCCCCCccccceEEEEE-EEecCC-C-CCeeeEEEeccC
Confidence 11 1368999999999999999887 565442211111000000 111111 1 111112221111
Q ss_pred CCCCCceEEEEEcCCCeEEEEEEecCCCC-CCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecC
Q psy14497 254 DYKTYGGGFLYHMENNQISIGYIISLDYK-NPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFD 332 (561)
Q Consensus 254 ~~~~~g~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (561)
......++++..++.+.+.+....... .......+.. +.+..++.....................++|..+
T Consensus 228 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~g 299 (547)
T PRK08132 228 --HPGQSVLLHRQPDNVWRIDFQLGWDADPEAEKKPENVI------PRVRALLGEDVPFELEWVSVYTFQCRRMDRFRHG 299 (547)
T ss_pred --CCCcEEEEEeCCCCeEEEEEecCCCCCchhhcCHHHHH------HHHHHHcCCCCCeeEEEEEeeeeeeeeecccccc
Confidence 112234445555565555443321110 0011111111 2233333211111100001111112335678889
Q ss_pred CEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchh
Q psy14497 333 GGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPA 404 (561)
Q Consensus 333 ~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~ 404 (561)
||+|+|||||.++|+.|||+|+||+||..||+.|+..+++......|+.|+++++.. ....+..++.....
T Consensus 300 RV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~-~~~~~~~s~~~~~~ 370 (547)
T PRK08132 300 RVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFA-ADENIRNSTRSTDF 370 (547)
T ss_pred cEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998876443322399999999864 33334444443333
No 28
>PRK06184 hypothetical protein; Provisional
Probab=99.97 E-value=2.3e-28 Score=259.73 Aligned_cols=339 Identities=14% Similarity=0.120 Sum_probs=186.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhcccccc-CCccccccchhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~ 100 (561)
++||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+.+++++-+ ..++. ............+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~------Gi~v~viE~~~~~~~~-~ra~~l~~~~~e~l-~~lGl~~~l~~~~~~~~~~ 74 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR------GVSFRLIEKAPEPFPG-SRGKGIQPRTQEVF-DDLGVLDRVVAAGGLYPPM 74 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCcC-ccceeecHHHHHHH-HHcCcHHHHHhcCccccce
Confidence 58999999999999999999999 9999999999876432 24566777776533 33320 0000000000011
Q ss_pred hhhcCCCCcc---cCCCCCCceeec-CCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14497 101 LFLSSKKSYK---IPSWILPICFKN-HGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 101 ~~~~~~~~~~---~~~~~~p~~~~~-~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
.+....+.+. +.....+..... ...+.++|..+++.|.+.+.+.|++++++++|+++.+++++. .+.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~--- 149 (502)
T PRK06184 75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGV--TARVAGP--- 149 (502)
T ss_pred eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE--EEEEEeC---
Confidence 1111111110 000000000001 125678899999999999998999999999999998764442 2322110
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccc-cceeEEEEeeCCCccCCCcEEEEeccCCCC
Q psy14497 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTY-SLGIKELWTINPKLHKKGLVIHTIGWPLDY 255 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 255 (561)
+++.++++|+||+|||.+|.+|++ +++......... ...+.. ...+. .... ..+.+ ..
T Consensus 150 ---------~~~~~i~a~~vVgADG~~S~vR~~----lgi~~~g~~~~~~~~~~~~-~~~~~--~~~~-~~~~~--~~-- 208 (502)
T PRK06184 150 ---------AGEETVRARYLVGADGGRSFVRKA----LGIGFPGETLGIDRMLVAD-VSLTG--LDRD-AWHQW--PD-- 208 (502)
T ss_pred ---------CCeEEEEeCEEEECCCCchHHHHh----CCCCcccCcCCCceEEEEE-EEeec--CCCc-ceEEc--cC--
Confidence 124589999999999999999888 555442211110 011111 11111 1111 12221 11
Q ss_pred CCCceEEEEEcCCC-eEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCE
Q psy14497 256 KTYGGGFLYHMENN-QISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGG 334 (561)
Q Consensus 256 ~~~g~~~~~~~~~~-~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 334 (561)
...+...++|..++ .+.+......+ ..+..+..+..+.+........ +. -..+.+. ..........++|..+||
T Consensus 209 ~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~--~~~~~~~~~a~~~~~gRv 283 (502)
T PRK06184 209 GDMGMIALCPLPGTDLFQIQAPLPPG-GEPDLSADGLTALLAERTGRTD-IR-LHSVTWA--SAFRMNARLADRYRVGRV 283 (502)
T ss_pred CCCcEEEEEEccCCCeEEEEEEcCCC-ccCCCCHHHHHHHHHHhcCCCC-cc-eeeeeee--eccccceeEhhhhcCCcE
Confidence 11133345566433 33333332221 1112222222222211100000 00 0001110 000001112457888999
Q ss_pred EEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhcc
Q psy14497 335 AFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNF 401 (561)
Q Consensus 335 ~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~ 401 (561)
+|+|||||.++|+.|||+|+||+||..||+.|+..+++ .....|+.|+++++.. ....+..++..
T Consensus 284 ~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-~~~~lL~~Ye~eR~p~-~~~~~~~s~~~ 348 (502)
T PRK06184 284 FLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG-APEALLDTYEEERRPV-AAAVLGLSTEL 348 (502)
T ss_pred EEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999988765 3322399999999864 33444444433
No 29
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.97 E-value=1.9e-28 Score=252.48 Aligned_cols=337 Identities=16% Similarity=0.163 Sum_probs=191.3
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCC-CcEEEEcCCCCCCCce---eecceeChhhHHhhccccccCCccc-cccchh
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKE-IKICVLEKGSELGAHI---LSGAIIDPRSIFELFPKEKLNKLFN-TPVIEE 98 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G-~~V~ViEk~~~~g~~~---~~G~~~~~~~l~~l~~~~~~~~~~~-~~~~~~ 98 (561)
||+|||||||||++|+.|++. | ++|+|+||.+.+.... ..+..+.+.+++. +..++....+. ......
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~------G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~-l~~lgl~~~~~~~~~~~~ 73 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL------GKIKIALIEANSPSAAQPGFDARSLALSYGSKQI-LEKLGLWPKLAPFATPIL 73 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC------CCceEEEEeCCCccccCCCCCCeeEeccHHHHHH-HHHCCChhhhHhhcCccc
Confidence 899999999999999999999 9 9999999998764431 1235667765442 23222000000 000011
Q ss_pred hhhhhcCC--CCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14497 99 RFLFLSSK--KSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 99 ~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
.+.+.... ....+...... ....+|.++|.+|.+.|.+.+.+ .|++++++++|+++..++++ +.|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~----- 143 (382)
T TIGR01984 74 DIHVSDQGHFGATHLRASEFG---LPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTL----- 143 (382)
T ss_pred eEEEEcCCCCceEEechhhcC---CCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEE-----
Confidence 11111111 11111100000 01225889999999999999988 49999999999999865443 33444
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCC
Q psy14497 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDY 255 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 255 (561)
++|.+++||+||+|||.+|.+++. +++........ ...+...+..... ........+
T Consensus 144 ----------~~g~~~~ad~vV~AdG~~S~vr~~----l~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~------ 200 (382)
T TIGR01984 144 ----------DNGQQLRAKLLIAADGANSKVREL----LSIPTEEHDYN-QTALIANIRHEQP--HQGCAFERF------ 200 (382)
T ss_pred ----------CCCCEEEeeEEEEecCCChHHHHH----cCCCCcccccC-CEEEEEEEEecCC--CCCEEEEee------
Confidence 235689999999999999998887 45443221110 1222222222111 112121221
Q ss_pred CCCceEEEEEcCCC-eEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecC
Q psy14497 256 KTYGGGFLYHMENN-QISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFD 332 (561)
Q Consensus 256 ~~~g~~~~~~~~~~-~~~vg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (561)
...+..+++|.+++ ...+.+..+.+... ...+..+..+.+... +...+....... .....+.. ....++|..+
T Consensus 201 ~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~ 276 (382)
T TIGR01984 201 TPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQA--FGWRLGKITQVG-ERKTYPLK-LRIAETHVHP 276 (382)
T ss_pred CCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HhhhccCeEEcC-CccEeecc-hhhhhheecC
Confidence 12233456687666 55554443221100 011122222222211 111111111100 00111111 1235678889
Q ss_pred CEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 333 GGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 333 ~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|++|+|||||.++|+.|||+|+||+||..||+.|............|+.|+++++.. ....++.++.+..+|
T Consensus 277 rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~ 348 (382)
T TIGR01984 277 RVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFD-QFITIGLTDGLNRLF 348 (382)
T ss_pred CEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987652111222399999998865 345556666666666
No 30
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.97 E-value=3e-28 Score=254.11 Aligned_cols=342 Identities=17% Similarity=0.157 Sum_probs=194.0
Q ss_pred ccEEEECchhHHHHHHHHHHh----ccccCCCCCcEEEEcCCCCCCCc-----------eeecceeChhhHHhh--cccc
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQ----LAIKKNKEIKICVLEKGSELGAH-----------ILSGAIIDPRSIFEL--FPKE 85 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~----~~~~~~~G~~V~ViEk~~~~g~~-----------~~~G~~~~~~~l~~l--~~~~ 85 (561)
|||+||||||+||++|+.|++ . |++|+|||+.+.+... ...+..+++++++-+ ++.|
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~------G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~ 74 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK------DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAW 74 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC------CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCch
Confidence 799999999999999999999 7 9999999996533211 012345666655433 2222
Q ss_pred ccCCccccccchhhhhhhcCCCC--cccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC---CEEEcCceEeEEEEc
Q psy14497 86 KLNKLFNTPVIEERFLFLSSKKS--YKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG---IDIFSGFSASEILYD 160 (561)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~G---v~i~~g~~v~~i~~~ 160 (561)
. ............+.+.+.... ..++... .....++.+++..|.+.|.+.+.+.+ ++++++++|+++..+
T Consensus 75 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~ 149 (437)
T TIGR01989 75 D-HIQSDRIQPFGRMQVWDGCSLALIRFDRDN----GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIP 149 (437)
T ss_pred h-hhhhhcCCceeeEEEecCCCCceEEeecCC----CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEec
Confidence 2 000000011111222222111 1111100 00122678999999999999998864 999999999999752
Q ss_pred -----CCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCcccc-ceeEEEEe
Q psy14497 161 -----SKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYS-LGIKELWT 234 (561)
Q Consensus 161 -----~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~ 234 (561)
+++..+.|.+ .+|.+++||+||+|||.+|.+|+. +++..... .|. .++-..+.
T Consensus 150 ~~~~~~~~~~v~v~~---------------~~g~~i~a~llVgADG~~S~vR~~----~gi~~~g~--~y~q~~~v~~v~ 208 (437)
T TIGR01989 150 SKYPNDNSNWVHITL---------------SDGQVLYTKLLIGADGSNSNVRKA----ANIDTTGW--NYNQHAVVATLK 208 (437)
T ss_pred cccccCCCCceEEEE---------------cCCCEEEeeEEEEecCCCChhHHH----cCCCccce--eeccEEEEEEEE
Confidence 1222233433 456789999999999999999988 55554221 111 11111122
Q ss_pred eCCCccCCCcEEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhh--------Chh----
Q psy14497 235 INPKLHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKT--------HPK---- 300 (561)
Q Consensus 235 ~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~~~~~~~~~~--------~~~---- 300 (561)
.... ...+...+.+ ...|-..++|..++..++.+........ ...+..+..+.+.. .|.
T Consensus 209 ~~~~-~~~~~~~~~f------~~~g~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~ 281 (437)
T TIGR01989 209 LEEA-TENDVAWQRF------LPTGPIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLL 281 (437)
T ss_pred cccC-CCCCeEEEEE------CCCCCEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhccccccccccccc
Confidence 2111 1222333332 1223344568877777776655321100 01111111111100 000
Q ss_pred ---HHHhhc---C---Ce------------eeeecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHH
Q psy14497 301 ---ICKILK---G---GK------------RISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSG 359 (561)
Q Consensus 301 ---~~~~l~---~---~~------------~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a 359 (561)
+..+++ . +. ........++. .....++|..+|++|+|||||.++|+.|||+|+||+||
T Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da 360 (437)
T TIGR01989 282 DYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDV 360 (437)
T ss_pred ccccccccccccccccccccccccCchhheeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHH
Confidence 000000 0 00 00000011221 22345678889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-Cc-c-chhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 360 ILVADSIFKKICSNN-KF-N-KLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 360 ~~lA~~l~~~l~~~~-~~-~-~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
..||+.|.+.+..+. .. . .|++|+++|+.. ....+..++.+.++|
T Consensus 361 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~v~~~t~~l~~l~ 408 (437)
T TIGR01989 361 ASLVKALAEAVSVGADIGSISSLKPYERERYAK-NVVLLGLVDKLHKLY 408 (437)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999998875443 21 2 399999999865 455566666666666
No 31
>PRK09126 hypothetical protein; Provisional
Probab=99.97 E-value=1.8e-28 Score=253.42 Aligned_cols=340 Identities=13% Similarity=0.107 Sum_probs=193.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC--ceeec--ceeChhhHHhhccccccCCcc-cc-
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA--HILSG--AIIDPRSIFELFPKEKLNKLF-NT- 93 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~--~~~~G--~~~~~~~l~~l~~~~~~~~~~-~~- 93 (561)
+|++||+|||||||||++|+.|+++ |++|+|+||.+.++. ....| ..+.+.++. .+..++....+ ..
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~-~L~~lGl~~~~~~~~ 73 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGS------GLKVTLIERQPLAALADPAFDGREIALTHASRE-ILQRLGAWDRIPEDE 73 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC------CCcEEEEeCCCcccccCCCCchhHHHhhHHHHH-HHHHCCChhhhcccc
Confidence 4689999999999999999999999 999999999987531 11122 234555443 23333310000 00
Q ss_pred ccchhhhhhhcCCCCcccCCCCCCce--eecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEe
Q psy14497 94 PVIEERFLFLSSKKSYKIPSWILPIC--FKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIAT 170 (561)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~ 170 (561)
......+.+.+......+. ++.. .....++.++|..+.+.|.+.+.+ .|++++++++|+++..++++ +.|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~ 148 (392)
T PRK09126 74 ISPLRDAKVLNGRSPFALT---FDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTL 148 (392)
T ss_pred CCccceEEEEcCCCCceeE---eehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEE
Confidence 0011111111111111111 1100 011236778999999999998865 68999999999999765332 34544
Q ss_pred cccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccce-eEEEEeeCCCccCCCcEEEEe
Q psy14497 171 NNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLG-IKELWTINPKLHKKGLVIHTI 249 (561)
Q Consensus 171 ~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 249 (561)
++|.++++|+||+|||.+|.+|+. +++..... .++.. +...+.... .......+.+
T Consensus 149 ---------------~~g~~~~a~~vI~AdG~~S~vr~~----~g~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~ 205 (392)
T PRK09126 149 ---------------ANGRRLTARLLVAADSRFSATRRQ----LGIGADMH--DFGRTMLVCRMRHEL--PHHHTAWEWF 205 (392)
T ss_pred ---------------cCCCEEEeCEEEEeCCCCchhhHh----cCCCcccc--ccCCeEEEEEEeccC--CCCCEEEEEe
Confidence 335689999999999999999887 44443211 11111 111111111 1122222222
Q ss_pred ccCCCCCCCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCC
Q psy14497 250 GWPLDYKTYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLP 327 (561)
Q Consensus 250 ~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 327 (561)
...+..+++|.+++...+.+..+.+... ...+..+..+.+.. .+...+....... .....+.. ....+
T Consensus 206 ------~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~~-~~~~~ 275 (392)
T PRK09126 206 ------GYGQTLALLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTA--RFKGRLGAMRLVS-SRHAYPLV-AVYAH 275 (392)
T ss_pred ------cCCCCeEEeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhccCeEEcC-CCcEeech-HHHHH
Confidence 1222356789887777776654322100 01111111111110 0111111111100 00111111 11245
Q ss_pred eeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcC-CC-ccc-hhhHHHHHhhchhhHhhhhhhccchh
Q psy14497 328 EFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSN-NK-FNK-LITYKTSFQASWLYKELYKARNFKPA 404 (561)
Q Consensus 328 ~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~-~~-~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~ 404 (561)
+|..+|++|+|||||.++|+.|||+|+||+||..||+.|...+..+ +. ... |+.|+++++.. ....+..++.+..+
T Consensus 276 ~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~ 354 (392)
T PRK09126 276 RFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLA-TRPLYHATNAIAAL 354 (392)
T ss_pred HHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999999887533 22 233 99999999865 45556666666665
Q ss_pred h
Q psy14497 405 M 405 (561)
Q Consensus 405 ~ 405 (561)
+
T Consensus 355 ~ 355 (392)
T PRK09126 355 Y 355 (392)
T ss_pred H
Confidence 5
No 32
>PF05187 ETF_QO: Electron transfer flavoprotein-ubiquinone oxidoreductase; InterPro: IPR007859 Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64 kDa monomer [].; GO: 0004174 electron-transferring-flavoprotein dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2GMJ_B 2GMH_B.
Probab=99.97 E-value=3.8e-32 Score=215.87 Aligned_cols=109 Identities=57% Similarity=1.001 Sum_probs=73.8
Q ss_pred hhhHHHHHHHHHHHHhcCCCCccccCCCCccCCcccccCCCCCCCCCCCCccccccccceeccccccCCCCCCceEEcCC
Q psy14497 408 GLYIGMLIIGIDQILFSGKFPFTLHNINSDYTYLEPASKHIPIKYPNPDNKLTFDKLSSIYVSNINHDEDQPIHLILKNK 487 (561)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fd~~~~~~~~~~~~~~~~~~h~~~~~~ 487 (561)
|+|.|+++.++.+++.+|+.||++.+...|+.+++++....+++||+||++|+||+++|||+||++|+||||||++|+|+
T Consensus 1 G~~~G~~~~g~~~~~~~g~~p~tl~~~~~D~~~l~~a~~~~~i~YpKpDg~ltFDklssv~~SgT~HeEdQP~HL~l~d~ 80 (110)
T PF05187_consen 1 GLYGGLAYSGLDQNLLKGRAPWTLKHKKPDHESLKPASKCKPIDYPKPDGKLTFDKLSSVYLSGTNHEEDQPCHLKLKDP 80 (110)
T ss_dssp HHHHHHHHHHHHTTTTTT--S------S-GGGG---GGGS---------SSSS--HHHHHHTTT-B--SSS--SEEESST
T ss_pred ChHHHHHHHHHHHHHccCCCCcccCCCCccHHHHhHHHhcccCCCCCCCCCCccccccceeccccCCCCCCCCeeEECCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccccccccCCeeEEEEee
Q psy14497 488 KIPIHINFSIYAGPEARYCPAGVYEFIIE 516 (561)
Q Consensus 488 ~~~~~~~~~~~~~~c~~~CP~~~~~~~~~ 516 (561)
++|+..|+.+|++||++||||+|||++++
T Consensus 81 ~i~~~~~~~~y~~P~qryCPAgVYE~v~~ 109 (110)
T PF05187_consen 81 EIPIEVNLPEYGGPEQRYCPAGVYEIVED 109 (110)
T ss_dssp THHHHTHHHHHS-THHHH-TTS-EEEE--
T ss_pred ChhhhhhhhhhcChhhhcCcceeEEEecc
Confidence 99999999999999999999999999864
No 33
>PRK07588 hypothetical protein; Provisional
Probab=99.97 E-value=3.1e-28 Score=251.24 Aligned_cols=338 Identities=13% Similarity=0.103 Sum_probs=187.5
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhcccccc-CCccccccchhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~ 101 (561)
.||+|||||||||++|+.|++. |++|+||||.+..... ..+..+.++++. .+..++. ............+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~-g~~~~l~~~~~~-~l~~lGl~~~l~~~~~~~~~~~ 72 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY------GHEPTLIERAPELRTG-GYMVDFWGVGYE-VAKRMGITDQLREAGYQIEHVR 72 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCceEEEeCCCCccCC-CeEEeccCcHHH-HHHHcCCHHHHHhccCCccceE
Confidence 4899999999999999999999 9999999999765321 112223344432 2222220 00000000111222
Q ss_pred hhcCCCCcc--cCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 102 FLSSKKSYK--IPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 102 ~~~~~~~~~--~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+.+..+... ++...+.. ..+...+.++|.+|.+.|.+++. .|++++++++|++++.++++ +.|.+
T Consensus 73 ~~~~~g~~~~~~~~~~~~~-~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~--v~v~~--------- 139 (391)
T PRK07588 73 SVDPTGRRKADLNVDSFRR-MVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDG--VRVTF--------- 139 (391)
T ss_pred EEcCCCCEEEEecHHHccc-cCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCe--EEEEE---------
Confidence 222222111 11000111 00112468999999999998764 47999999999999875332 33444
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEE-EEeeCCCccCCCcEEEEeccCCCCCCC
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKE-LWTINPKLHKKGLVIHTIGWPLDYKTY 258 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~ 258 (561)
++|.++++|+||+|||.+|.+|+.+ ++.... +..+ .+... ................. | . ...
T Consensus 140 ------~~g~~~~~d~vIgADG~~S~vR~~~---~~~~~~--~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~-~--~~g 202 (391)
T PRK07588 140 ------ERGTPRDFDLVIGADGLHSHVRRLV---FGPERD--FEHY-LGCKVAACVVDGYRPRDERTYVL--Y-N--EVG 202 (391)
T ss_pred ------CCCCEEEeCEEEECCCCCccchhhc---cCCccc--eEEE-cCcEEEEEEcCCCCCCCCceEEE--E-e--CCC
Confidence 4466889999999999999998863 222211 1111 11111 11111111111112111 1 0 112
Q ss_pred ceEEEEEcCCCeEEEEEEecCCCCCCCCChHHH---H-HHhhhC-h---hHHHhhcCCeeeeecceeeccCCCccCCeee
Q psy14497 259 GGGFLYHMENNQISIGYIISLDYKNPYLSPFEE---F-QRYKTH-P---KICKILKGGKRISYGARTITTGGLQSLPEFI 330 (561)
Q Consensus 259 g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~---~-~~~~~~-~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (561)
+...++|.+++...+.+....+...+..+.... + +.|... + .+.+.+.......+. ......+++|+
T Consensus 203 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~w~ 277 (391)
T PRK07588 203 RQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFD-----VVSQIRMDRWS 277 (391)
T ss_pred CEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchhee-----eeeeeccCccc
Confidence 234466776665554444433222222222221 2 122211 1 222222211111110 00112356788
Q ss_pred cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhhh
Q psy14497 331 FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAMK 406 (561)
Q Consensus 331 ~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~ 406 (561)
.+|++|+|||||.|+|+.|||+|+||+||..||+.|.... .+...+|+.|++.++.. +...+..++.+..++.
T Consensus 278 ~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~--~~~~~al~~Y~~~R~~~-~~~~~~~~~~~~~~~~ 350 (391)
T PRK07588 278 RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG--GDHRRAFDAYEKRLRPF-IAGKQAAAAKFLSVFA 350 (391)
T ss_pred cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHH-HHHHHhhccccccccc
Confidence 8999999999999999999999999999999999997531 23323399999999865 5666777777777764
No 34
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.97 E-value=5e-28 Score=251.14 Aligned_cols=343 Identities=15% Similarity=0.102 Sum_probs=192.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc-eeecceeChhhHHhh--ccccccCCccccccchh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH-ILSGAIIDPRSIFEL--FPKEKLNKLFNTPVIEE 98 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~-~~~G~~~~~~~l~~l--~~~~~~~~~~~~~~~~~ 98 (561)
.+||+|||||||||++|+.|++. ++|++|+||||.+..... ...|..+.+++++-+ ++.|. ..........
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~----g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~--~~~~~~~~~~ 74 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQA----APHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWD--EIAPEAQPIT 74 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcC----CCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChh--hhhhhcCccc
Confidence 38999999999999999999998 223999999998764321 124566777665422 22222 0000000111
Q ss_pred hhhhhcCCCCccc--CCCCCCcee--ecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14497 99 RFLFLSSKKSYKI--PSWILPICF--KNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 99 ~~~~~~~~~~~~~--~~~~~p~~~--~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
.+.+.+....... ....+.... .....+.++|..|.+.|.+.+.+.|++++++++|+++..++++ +.|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~---- 148 (403)
T PRK07333 75 DMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTL---- 148 (403)
T ss_pred EEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEE----
Confidence 1111111110000 000000000 0122568999999999999999899999999999999765332 33444
Q ss_pred cccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCC
Q psy14497 175 INKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLD 254 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 254 (561)
++|.++++|+||+|||.+|.+++. +++......... .++........ ...+.....+
T Consensus 149 -----------~~g~~~~ad~vI~AdG~~S~vr~~----~g~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~----- 205 (403)
T PRK07333 149 -----------SDGSVLEARLLVAADGARSKLREL----AGIKTVGWDYGQ-SGIVCTVEHER--PHGGRAEEHF----- 205 (403)
T ss_pred -----------CCCCEEEeCEEEEcCCCChHHHHH----cCCCcccccCCC-EEEEEEEEcCC--CCCCEEEEEe-----
Confidence 235689999999999999999877 555432111001 11111121111 1112222221
Q ss_pred CCCCceEEEEEcCCCeEEEEEEecCCCCCC--CCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecC
Q psy14497 255 YKTYGGGFLYHMENNQISIGYIISLDYKNP--YLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFD 332 (561)
Q Consensus 255 ~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (561)
...+..+++|..++..++.+....+.... ........+.+.. .+...+..-.... .....+. .....++|+.+
T Consensus 206 -~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g 280 (403)
T PRK07333 206 -LPAGPFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQ--RFGHRLGELKVLG-KRRAFPL-GLTLARSFVAP 280 (403)
T ss_pred -CCCCceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhcCceEecc-CccEeec-hhhhhhhccCC
Confidence 23344567898878777655432110000 0011111111110 0111111101110 0111121 12345678889
Q ss_pred CEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC--Cccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 333 GGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN--KFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 333 ~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~--~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|++|+|||||.++|+.|||+|+||+||..||+.|...+..+. .... |+.|++.++.. ....+..++.+.+++
T Consensus 281 rv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~ 355 (403)
T PRK07333 281 RFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFD-TVRMGVTTDVLNRLF 355 (403)
T ss_pred CEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875321 1233 99999866643 344444555555555
No 35
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.97 E-value=6.7e-28 Score=249.77 Aligned_cols=338 Identities=14% Similarity=0.111 Sum_probs=189.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC-CCCC--Cc-eeecceeChhhHHhh--ccccc-cCCccccc
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG-SELG--AH-ILSGAIIDPRSIFEL--FPKEK-LNKLFNTP 94 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~-~~~g--~~-~~~G~~~~~~~l~~l--~~~~~-~~~~~~~~ 94 (561)
.+||+||||||+||++|+.|++. |++|+|+|+. +... .. ...+..+.+++++-+ ++.|. .......+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 77 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES------DLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAP 77 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC------CCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCc
Confidence 58999999999999999999999 9999999996 3211 10 012345666554422 23232 10000011
Q ss_pred cchhhhhhhcCC--CCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14497 95 VIEERFLFLSSK--KSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 95 ~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
. ..+...+.. +...++....+ ....++.+.+..|.+.|.+.+.+ .|++++++++|+++..++++ +.|.+
T Consensus 78 ~--~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~- 149 (405)
T PRK08850 78 Y--IAMEVWEQDSFARIEFDAESMA---QPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTL- 149 (405)
T ss_pred c--cEEEEEeCCCCceEEEeccccC---CCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEE-
Confidence 1 112222221 11111110000 01226788999999999999877 47999999999999765333 33444
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEecc
Q psy14497 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGW 251 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (561)
++|.++++|+||+|||.+|.+|+. +++......... .++...+..+. ...+...+.+
T Consensus 150 --------------~~g~~~~a~lvIgADG~~S~vR~~----~~~~~~~~~~~~-~~~~~~v~~~~--~~~~~~~~~~-- 206 (405)
T PRK08850 150 --------------DNGQALTAKLVVGADGANSWLRRQ----MDIPLTHWDYGH-SALVANVRTVD--PHNSVARQIF-- 206 (405)
T ss_pred --------------CCCCEEEeCEEEEeCCCCChhHHH----cCCCeeEEeecc-EEEEEEEEccC--CCCCEEEEEE--
Confidence 345689999999999999999988 455432111111 22222222221 1222222222
Q ss_pred CCCCCCCceEEEEEcCC-CeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCe
Q psy14497 252 PLDYKTYGGGFLYHMEN-NQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 252 p~~~~~~g~~~~~~~~~-~~~~vg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
...|...++|..+ +..++.+..+..... ...+..+..+.+.. .+...+..-+... ....+|.. ....++
T Consensus 207 ----~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~pl~-~~~~~~ 278 (405)
T PRK08850 207 ----TPQGPLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTA--EFDNRLGLCEVVG-ERQAFPLK-MRYARD 278 (405)
T ss_pred ----cCCCceEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhhCcEEEcc-cccEEecc-eeeccc
Confidence 1223334567754 445665554321100 00111111111110 0111111001110 00111111 122467
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC-C-ccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN-K-FNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 329 ~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~-~-~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|..+|++|+|||||.++|+.|||+|+||+||..||+.|...+..+. . ... |+.|++.++.. ....+..++.+.++|
T Consensus 279 ~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~~~ 357 (405)
T PRK08850 279 FVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAE-AAKMIAAMQGFRDLF 357 (405)
T ss_pred cccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999988764332 2 123 99999888754 455555666666655
No 36
>PRK07190 hypothetical protein; Provisional
Probab=99.97 E-value=5e-28 Score=253.86 Aligned_cols=328 Identities=14% Similarity=0.111 Sum_probs=186.9
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhh--ccccc----cCCcccc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL--FPKEK----LNKLFNT 93 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l--~~~~~----~~~~~~~ 93 (561)
+..+||+||||||+||++|+.|++. |++|+||||.+.+.. ...+..+++++++-+ ++.+. .+.+...
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~------Gi~V~llEr~~~~~~-~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~ 75 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLC------GLNTVIVDKSDGPLE-VGRADALNARTLQLLELVDLFDELYPLGKPCNT 75 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHc------CCCEEEEeCCCcccc-cccceEeCHHHHHHHHhcChHHHHHhhCcccee
Confidence 3468999999999999999999999 999999999987643 223445777765422 22221 1111110
Q ss_pred ccchhhhhhhcCCCCcccCCCC---CCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEe
Q psy14497 94 PVIEERFLFLSSKKSYKIPSWI---LPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIAT 170 (561)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~ 170 (561)
. ........+...... .+. ......+.+.+..+++.|.+.+.+.|++++++++|+++.+++++. .+.+
T Consensus 76 ~------~~~~~g~~i~~~~~~~~~~~~-~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~ 146 (487)
T PRK07190 76 S------SVWANGKFISRQSSWWEELEG-CLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTL 146 (487)
T ss_pred E------EEecCCceEeeccccCccCCc-CCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEE
Confidence 0 000000000000000 000 001124567899999999999999999999999999998865542 2333
Q ss_pred cccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeE-EEEeeCCCccCCCcEEEEe
Q psy14497 171 NNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIK-ELWTINPKLHKKGLVIHTI 249 (561)
Q Consensus 171 ~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 249 (561)
. +|.+++||+||+|||.+|.+|++ +|+............+- .....+.+.. +... .+
T Consensus 147 ~---------------~g~~v~a~~vVgADG~~S~vR~~----lgi~f~g~~~~~~~~~~d~~~~~~~~~~-~~~~--~~ 204 (487)
T PRK07190 147 S---------------NGERIQSRYVIGADGSRSFVRNH----FNVPFEIIRPQIIWAVIDGVIDTDFPKV-PEII--VF 204 (487)
T ss_pred C---------------CCcEEEeCEEEECCCCCHHHHHH----cCCCccccccceeEEEEEEEEccCCCCC-cceE--EE
Confidence 2 24589999999999999999988 56654322111111111 1111110110 1111 11
Q ss_pred ccCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhh--ChhHHHhhcCCeeeeecceeeccCCCccCC
Q psy14497 250 GWPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKT--HPKICKILKGGKRISYGARTITTGGLQSLP 327 (561)
Q Consensus 250 ~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 327 (561)
+ ...+..+++|.+++...+-.. .+ .+..+..+..+.+.. .+. .+.- ..+.+.. .++. ......
T Consensus 205 -~----~~~g~~~~~p~~~~~~r~~~~--~~--~~~~t~~~~~~~l~~~~~~~---~~~~-~~~~w~s-~~~~-~~r~a~ 269 (487)
T PRK07190 205 -Q----AETSDVAWIPREGEIDRFYVR--MD--TKDFTLEQAIAKINHAMQPH---RLGF-KEIVWFS-QFSV-KESVAE 269 (487)
T ss_pred -E----cCCCCEEEEECCCCEEEEEEE--cC--CCCCCHHHHHHHHHHhcCCC---CCce-EEEEEEE-Eeee-CcEehh
Confidence 1 123445566776554432221 11 112222222222211 010 0110 1111111 1111 122345
Q ss_pred eee-cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhcc
Q psy14497 328 EFI-FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNF 401 (561)
Q Consensus 328 ~~~-~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~ 401 (561)
++. .+||+|+|||||.++|.+|||+|++|+||..||+.|+..+++......|.+|+++++.. ....+..++..
T Consensus 270 ~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~-a~~vl~~t~~~ 343 (487)
T PRK07190 270 HFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPV-AQGVIETSGEL 343 (487)
T ss_pred hcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 665 69999999999999999999999999999999999998876544322399999999864 33444444433
No 37
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.96 E-value=1.2e-27 Score=247.36 Aligned_cols=334 Identities=14% Similarity=0.110 Sum_probs=184.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhcccccc-CCccccccchhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~ 100 (561)
.-+|+|||||||||++|+.|++. |++|+||||.+.+.. ...|..+.+.++..+ ..++. ............+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~------G~~V~i~E~~~~~~~-~g~gi~l~~~~~~~L-~~~Gl~~~l~~~~~~~~~~ 73 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAAR------GWAVTIIEKAQELSE-VGAGLQLAPNAMRHL-ERLGVADRLSGTGVTPKAL 73 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCc-CCccceeChhHHHHH-HHCCChHHHhhcccCcceE
Confidence 46899999999999999999999 999999999886543 224556677765533 22220 0000000111111
Q ss_pred hhhcCCCC-ccc--CCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14497 101 LFLSSKKS-YKI--PSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 101 ~~~~~~~~-~~~--~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
.+.+.... ... ..............+.++|.+|.+.|.+.+.+ .|++++++++|+++..++++ +.|.+.+.
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~--- 148 (400)
T PRK06475 74 YLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRT--- 148 (400)
T ss_pred EEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeC---
Confidence 11111100 000 00000000011224578999999999999876 48999999999999765333 23333110
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCC--Ccc-----CCCcEEEEe
Q psy14497 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINP--KLH-----KKGLVIHTI 249 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~ 249 (561)
.++.++++|+||+|||.+|.+|+.+ +..... ...+ ..+...+.... ..+ ..+.....+
T Consensus 149 ---------~~~~~~~adlvIgADG~~S~vR~~~----~~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (400)
T PRK06475 149 ---------NSVETVSAAYLIACDGVWSMLRAKA----GFSKAR-FSGH-IAWRTTLAADALPASFLSAMPEHKAVSAWL 213 (400)
T ss_pred ---------CCCcEEecCEEEECCCccHhHHhhc----CCCCCC-cCCc-eEEEEEeehhhcchhhhhhcccCCceEEEE
Confidence 1234789999999999999998883 332211 1111 22332222111 000 111111111
Q ss_pred ccCCCCCCCceEEEEEcCCCeEEEEEEecC-CC----CCCCCChHHHHHHhhh-ChhHHHhhcCCeeeeecceeeccCCC
Q psy14497 250 GWPLDYKTYGGGFLYHMENNQISIGYIISL-DY----KNPYLSPFEEFQRYKT-HPKICKILKGGKRISYGARTITTGGL 323 (561)
Q Consensus 250 ~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~-~~----~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (561)
+..+....||..++.....+.... .. ...........+.+.. .+.+..+++...... ..+....
T Consensus 214 ------g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~----~~~l~~~ 283 (400)
T PRK06475 214 ------GNKAHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWT----YWPLFEM 283 (400)
T ss_pred ------cCCCEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCcee----ECcCccc
Confidence 223344567776554332222111 10 1111122222223332 244555554332111 1121111
Q ss_pred ccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhh
Q psy14497 324 QSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKA 398 (561)
Q Consensus 324 ~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~ 398 (561)
...+.|+.+|++|+|||||.++|+.|||+|+||+||..||+.|.. .+...+|+.|++.++.. +...+..+
T Consensus 284 ~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~----~~~~~aL~~Ye~~R~~r-~~~~~~~s 353 (400)
T PRK06475 284 ADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS----DDQSAGLKRFDSVRKER-IAAVAKRG 353 (400)
T ss_pred CCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 223344668999999999999999999999999999999998852 23333499999988865 44444444
No 38
>PRK06834 hypothetical protein; Provisional
Probab=99.96 E-value=1.8e-27 Score=250.04 Aligned_cols=317 Identities=14% Similarity=0.103 Sum_probs=179.7
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhh--ccccc-cCCccccccch
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL--FPKEK-LNKLFNTPVIE 97 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l--~~~~~-~~~~~~~~~~~ 97 (561)
.++||+||||||+||++|+.|++. |++|+||||.+.+......+..+++++++.+ ++.+. .... ......
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~------G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~-~~~~~~ 74 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA------GVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQ-GQVAQV 74 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhc-CCcccc
Confidence 469999999999999999999999 9999999998764311112345677765432 22222 0000 000000
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccccccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINK 177 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~ 177 (561)
..+. ...+....++. .....+.+.+..+++.|.+.+++.|++++++++|+++..++++ +.|.+.
T Consensus 75 ~~~~------~~~~~~~~~~~--~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~------ 138 (488)
T PRK06834 75 TGFA------ATRLDISDFPT--RHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELS------ 138 (488)
T ss_pred ceee------eEecccccCCC--CCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEEC------
Confidence 0000 00111001111 0122567889999999999999999999999999999876443 334432
Q ss_pred CCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCC
Q psy14497 178 EGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKT 257 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 257 (561)
+|.++++|+||+|||.+|.+|+. +|+............+.. +.++.. +....+ ...
T Consensus 139 ---------~g~~i~a~~vVgADG~~S~vR~~----lgi~~~g~~~~~~~~~~d-v~~~~~---~~~~~~-------~~~ 194 (488)
T PRK06834 139 ---------DGRTLRAQYLVGCDGGRSLVRKA----AGIDFPGWDPTTSYLIAE-VEMTEE---PEWGVH-------RDA 194 (488)
T ss_pred ---------CCCEEEeCEEEEecCCCCCcHhh----cCCCCCCCCcceEEEEEE-EEecCC---CCccee-------eCC
Confidence 24579999999999999999877 565543222111111111 111110 000000 011
Q ss_pred CceEEEEEcC-CCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEE
Q psy14497 258 YGGGFLYHME-NNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAF 336 (561)
Q Consensus 258 ~g~~~~~~~~-~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 336 (561)
.+...+.|.. ++...+.+...........+..+..+.+... . ..-+...... +. ..++. .....++|..+||+|
T Consensus 195 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-g~~~~~~~~~-~~-~~~~~-~~r~a~~~~~gRV~L 269 (488)
T PRK06834 195 LGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLDDLREALIAV-Y-GTDYGIHSPT-WI-SRFTD-MARQAASYRDGRVLL 269 (488)
T ss_pred CceEEEeccCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHh-h-CCCCccccce-eE-Eeccc-cceecccccCCcEEE
Confidence 2222233433 4455544432211111112222222222110 0 0000000011 10 01111 112356888899999
Q ss_pred EecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhc
Q psy14497 337 IGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQAS 389 (561)
Q Consensus 337 vGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~ 389 (561)
+|||||.++|+.|||+|++|+||..||+.|+..+.+......|.+|+++++..
T Consensus 270 aGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~ 322 (488)
T PRK06834 270 AGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPV 322 (488)
T ss_pred EeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887544322399999999864
No 39
>PRK06996 hypothetical protein; Provisional
Probab=99.96 E-value=2.1e-27 Score=245.23 Aligned_cols=337 Identities=13% Similarity=0.117 Sum_probs=189.2
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCC----CcEEEEcCCCCCCCc-eeecceeChhhHHhh--ccccc-cCC
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKE----IKICVLEKGSELGAH-ILSGAIIDPRSIFEL--FPKEK-LNK 89 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G----~~V~ViEk~~~~g~~-~~~G~~~~~~~l~~l--~~~~~-~~~ 89 (561)
|-++.+||+||||||+|+++|+.|++. | ++|+|+|+.+..... ...+..+++..++-+ ++.|. ...
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~------g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~ 80 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARR------SATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADAT 80 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcC------CCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCC
Confidence 456789999999999999999999998 7 479999998654321 113455667665522 33333 111
Q ss_pred ccccccchhhhhhhcC--CCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEE
Q psy14497 90 LFNTPVIEERFLFLSS--KKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCG 167 (561)
Q Consensus 90 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~ 167 (561)
++. .+.+.+. .+...+....+. .+..+|.++|..|.+.|.+.+.+.|++++++++++++..++++ +.
T Consensus 81 ~~~------~~~~~~~~~~g~~~~~~~~~~---~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~ 149 (398)
T PRK06996 81 PIE------HIHVSQRGHFGRTLIDRDDHD---VPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VT 149 (398)
T ss_pred ccc------EEEEecCCCCceEEecccccC---CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EE
Confidence 111 1111111 111111111111 1123789999999999999999999999999999999765443 33
Q ss_pred EEecccccccCCceecccccCeEEecCEEEEccCC-CchhhHHHHHHcCCCCCCCCcccc-ceeEEEEeeCCCccCCCcE
Q psy14497 168 IATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS-RGHLSKQIIKKFNLDNKKDPQTYS-LGIKELWTINPKLHKKGLV 245 (561)
Q Consensus 168 V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~-~S~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 245 (561)
|.+.+. +| +.++++|+||+|||. +|.+|+. ++..... ..+. ..+...+.... ..++..
T Consensus 150 v~~~~~----~g--------~~~i~a~lvIgADG~~~s~~r~~----~~~~~~~--~~~~~~~~~~~v~~~~--~~~~~~ 209 (398)
T PRK06996 150 LALGTP----QG--------ARTLRARIAVQAEGGLFHDQKAD----AGDSARR--RDYGQTAIVGTVTVSA--PRPGWA 209 (398)
T ss_pred EEECCC----Cc--------ceEEeeeEEEECCCCCchHHHHH----cCCCcee--eecCCeEEEEEEEccC--CCCCEE
Confidence 444220 11 147999999999997 4666666 4443321 1111 12222222211 122222
Q ss_pred EEEeccCCCCCCCceEEEEEcCCCe---EEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecce-eec
Q psy14497 246 IHTIGWPLDYKTYGGGFLYHMENNQ---ISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGAR-TIT 319 (561)
Q Consensus 246 ~~~~~~p~~~~~~g~~~~~~~~~~~---~~vg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 319 (561)
...+ ...|...++|..++. ..+.+....+... ...+..+..+.+.. .+...+. ........ .++
T Consensus 210 ~~~~------~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~--~~~~~~~~~~~~ 279 (398)
T PRK06996 210 WERF------THEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGA--AFGTRMG--RFTRIAGRHAFP 279 (398)
T ss_pred EEEe------cCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HhccccC--ceEEecceEEEe
Confidence 2222 112223345765443 4443333211100 00111111111110 0111111 11111111 122
Q ss_pred cCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhh
Q psy14497 320 TGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKAR 399 (561)
Q Consensus 320 ~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~ 399 (561)
.. ....++|..+||+|+|||||.++|+.|||+|+||+||..||+.|.. .+.....|..|+++++.. +...+..++
T Consensus 280 l~-~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~---~~~~~~~L~~Y~~~R~~~-~~~~~~~s~ 354 (398)
T PRK06996 280 LG-LNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD---HGATPLALATFAARRALD-RRVTIGATD 354 (398)
T ss_pred ee-cccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 11 2335678999999999999999999999999999999999999965 233323399999998755 455566677
Q ss_pred ccchhhh
Q psy14497 400 NFKPAMK 406 (561)
Q Consensus 400 ~~~~~~~ 406 (561)
.+.++|.
T Consensus 355 ~l~~~~~ 361 (398)
T PRK06996 355 LLPRLFT 361 (398)
T ss_pred HHHHHHc
Confidence 6666663
No 40
>PRK06126 hypothetical protein; Provisional
Probab=99.96 E-value=1.9e-27 Score=255.42 Aligned_cols=338 Identities=14% Similarity=0.122 Sum_probs=184.8
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-------cCCcc
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-------LNKLF 91 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-------~~~~~ 91 (561)
.++++||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+++++++-+ ..++ .+.+.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~------G~~v~viEr~~~~~~~-~ra~~l~~r~~e~L-~~lGl~~~l~~~g~~~ 75 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRR------GVDSILVERKDGTAFN-PKANTTSARSMEHF-RRLGIADEVRSAGLPV 75 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCCC-CccccCCHHHHHHH-HhcChHHHHHhhcCCc
Confidence 45679999999999999999999999 9999999998765332 23455777776532 3332 11111
Q ss_pred ccccchhhhhhhcC-CCC----cccCCCC----CC-----ceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeE
Q psy14497 92 NTPVIEERFLFLSS-KKS----YKIPSWI----LP-----ICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASE 156 (561)
Q Consensus 92 ~~~~~~~~~~~~~~-~~~----~~~~~~~----~p-----~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~ 156 (561)
... ....+... .+. +..+... .+ ........+.++|..|.+.|.+.+.+ .|++++++++|++
T Consensus 76 ~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~ 152 (545)
T PRK06126 76 DYP---TDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTD 152 (545)
T ss_pred ccc---CCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEE
Confidence 000 00001100 000 0000000 00 00001125678999999999999987 5899999999999
Q ss_pred EEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeC
Q psy14497 157 ILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTIN 236 (561)
Q Consensus 157 i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 236 (561)
+..++++ + .+.+.+ ..+|+ ..++++|+||+|||.+|.+|+. +++....... +...+...+..+
T Consensus 153 i~~~~~~-v-~v~~~~---~~~g~-------~~~i~ad~vVgADG~~S~VR~~----lgi~~~g~~~-~~~~~~~~~~~~ 215 (545)
T PRK06126 153 FEQDADG-V-TATVED---LDGGE-------SLTIRADYLVGCDGARSAVRRS----LGISYEGTSG-LQRDLSIYIRAP 215 (545)
T ss_pred EEECCCe-E-EEEEEE---CCCCc-------EEEEEEEEEEecCCcchHHHHh----cCCccccCCC-cceEEEEEEEcC
Confidence 9876443 2 233321 01221 1378999999999999999887 4554321110 101112222222
Q ss_pred C--CccCCCc-EEEEeccCCCCCCCceEEEEEcC-CCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCC---e
Q psy14497 237 P--KLHKKGL-VIHTIGWPLDYKTYGGGFLYHME-NNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGG---K 309 (561)
Q Consensus 237 ~--~~~~~~~-~~~~~~~p~~~~~~g~~~~~~~~-~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~ 309 (561)
. ....... ..+.+.+| . ...++++.+ +..+.+. ...........+..+..+.+ ...+... +
T Consensus 216 ~l~~~~~~~~~~~~~~~~p---~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 283 (545)
T PRK06126 216 GLAALVGHDPAWMYWLFNP---D--RRGVLVAIDGRDEWLFH-QLRGGEDEFTIDDVDARAFV------RRGVGEDIDYE 283 (545)
T ss_pred chHHHhcCCCceEEEEECC---C--ccEEEEEECCCCeEEEE-EecCCCCCCCCCHHHHHHHH------HHhcCCCCCeE
Confidence 1 0111111 11221111 1 223344443 3333332 12111111112222222211 1222100 1
Q ss_pred eeeecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhc
Q psy14497 310 RISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQAS 389 (561)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~ 389 (561)
........ ......++|..+||+|+|||||.++|+.|||+|+||+||..||+.|+..++.......|+.|+++|+..
T Consensus 284 i~~~~~w~---~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~ 360 (545)
T PRK06126 284 VLSVVPWT---GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPI 360 (545)
T ss_pred EEeecccc---hhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHH
Confidence 11111111 112345678889999999999999999999999999999999999998775433323399999999864
Q ss_pred hhhHhhhhhhc
Q psy14497 390 WLYKELYKARN 400 (561)
Q Consensus 390 ~~~~~~~~~~~ 400 (561)
....+..++.
T Consensus 361 -~~~~~~~s~~ 370 (545)
T PRK06126 361 -AARNTDYARR 370 (545)
T ss_pred -HHHHHHHHHH
Confidence 3333444433
No 41
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.96 E-value=2.6e-27 Score=244.42 Aligned_cols=340 Identities=15% Similarity=0.136 Sum_probs=194.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce----eecceeChhhHHhhccccccCCcc--cc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI----LSGAIIDPRSIFELFPKEKLNKLF--NT 93 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~----~~G~~~~~~~l~~l~~~~~~~~~~--~~ 93 (561)
.|.+||+|||||||||++|+.|++. |++|+|+||.+.+.... .....+.+++++.+ ..++....+ ..
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l-~~~g~~~~~~~~~ 75 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQS------GLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFL-ERLGVWQALDAAR 75 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCccccCCCCCCceEeecHHHHHHH-HHcCchhhhhhhc
Confidence 4679999999999999999999999 99999999998764310 01134556554422 333200000 00
Q ss_pred ccchhhhhhhcCC-CCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEec
Q psy14497 94 PVIEERFLFLSSK-KSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 94 ~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
......+.+.... ..+.+.... .......+.++|..|.+.|.+.+.+.| ++++ +++|+++..++++ +.|.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~ 149 (388)
T PRK07608 76 LAPVYDMRVFGDAHARLHFSAYQ---AGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLA 149 (388)
T ss_pred CCcceEEEEEECCCceeEeeccc---cCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEEC
Confidence 0011111111111 111111000 001122578999999999999998887 9998 9999998765332 345542
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEecc
Q psy14497 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGW 251 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (561)
+|.++++|+||+|||.+|.+++. +++.....+. ...++...++.+.. ......+.+
T Consensus 150 ---------------~g~~~~a~~vI~adG~~S~vr~~----~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~-- 205 (388)
T PRK07608 150 ---------------DGQVLRADLVVGADGAHSWVRSQ----AGIKAERRPY-RQTGVVANFKAERP--HRGTAYQWF-- 205 (388)
T ss_pred ---------------CCCEEEeeEEEEeCCCCchHHHh----cCCCcccccc-CCEEEEEEEEecCC--CCCEEEEEe--
Confidence 35579999999999999998877 5554322221 11222222332211 122222221
Q ss_pred CCCCCCCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCee
Q psy14497 252 PLDYKTYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEF 329 (561)
Q Consensus 252 p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (561)
...+..+++|.+++.+.+.+........ ...++.+..+.+... +...+..-.... .....+. .....+.|
T Consensus 206 ----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 277 (388)
T PRK07608 206 ----RDDGILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERA--SGGRLGRLECVT-PAAGFPL-RLQRVDRL 277 (388)
T ss_pred ----cCCCCEEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HHHhcCCceecC-Ccceeec-chhhhhhh
Confidence 2233456779888877766554321100 001121222222110 111111111110 0011121 11235678
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCc--cchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKF--NKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 330 ~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~--~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
+.+|++++|||||.++|+.|||+|+||+||..||+.|.......+.. ..|++|+++++.. +....+.++.+..++
T Consensus 278 ~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~-~~~~~~~~~~~~~~~ 354 (388)
T PRK07608 278 VAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARRED-ILALQVATDGLQRLF 354 (388)
T ss_pred hcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999998764222221 2399999988865 445566666666655
No 42
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.96 E-value=4.8e-28 Score=249.78 Aligned_cols=341 Identities=13% Similarity=0.120 Sum_probs=186.7
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhcccccc-CCccccccch
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKL-NKLFNTPVIE 97 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~-~~~~~~~~~~ 97 (561)
++..+||+||||||+||++|+.|++. |++|+|||+.+.+.. . .+..+.+..++ ++..++. ..........
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~------G~~v~liE~~~~~~~-~-r~~~l~~~s~~-~l~~lgl~~~~~~~~~~~ 74 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARA------GASVALVAPEPPYAD-L-RTTALLGPSIR-FLERLGLWARLAPHAAPL 74 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcC------CCeEEEEeCCCCCCC-c-chhhCcHHHHH-HHHHhCchhhhHhhccee
Confidence 34468999999999999999999999 999999999876532 1 12234444432 2222220 0000011111
Q ss_pred hhhhhhcCCCCcc-cCCCCCCc--eeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEeccc
Q psy14497 98 ERFLFLSSKKSYK-IPSWILPI--CFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNNF 173 (561)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~~~p~--~~~~~~~~~i~r~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~ 173 (561)
..+.+.+..+... .+...+.. ......+|.+++..+.+.|.+.+.+.+ +. +++++|+++..++++ +.|.+.
T Consensus 75 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~-- 149 (388)
T PRK07494 75 QSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLA-- 149 (388)
T ss_pred eEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEEC--
Confidence 1222222221110 00000100 001123688999999999999998764 55 789999999765333 334442
Q ss_pred ccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCC
Q psy14497 174 GINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPL 253 (561)
Q Consensus 174 ~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 253 (561)
+|.++++|+||+|||.+|.+|+. +++......... .++...+..+. .........+
T Consensus 150 -------------~g~~~~a~~vI~AdG~~S~vr~~----~g~~~~~~~~~~-~~~~~~v~~~~--~~~~~~~~~~---- 205 (388)
T PRK07494 150 -------------DGTTLSARLVVGADGRNSPVREA----AGIGVRTWSYPQ-KALVLNFTHSR--PHQNVSTEFH---- 205 (388)
T ss_pred -------------CCCEEEEeEEEEecCCCchhHHh----cCCCceecCCCC-EEEEEEEeccC--CCCCEEEEEe----
Confidence 35689999999999999999887 455432111110 11111111111 1112222221
Q ss_pred CCCCCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeec
Q psy14497 254 DYKTYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIF 331 (561)
Q Consensus 254 ~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (561)
...|..+++|..++..++.+....+... ...+..+..+.+.. .+.+++...... ......+... ...++|..
T Consensus 206 --~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~~~l~~-~~~~~~~~ 279 (388)
T PRK07494 206 --TEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEE--RMQSMLGKLTLE-PGRQAWPLSG-QVAHRFAA 279 (388)
T ss_pred --CCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhcCCeEEc-cCCcEeechH-HHHHhhcc
Confidence 1223355678766666555443221100 01111111122211 122222211111 0111122111 12346788
Q ss_pred CCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 332 DGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 332 ~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
+|++++|||||.++|+.|||+|+||+||..||+.|..... +..... |+.|+++++.. +...+.....+.+.|
T Consensus 280 ~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~-~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 352 (388)
T PRK07494 280 GRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPE-DPGSAAVLAAYDRARRPD-ILSRTASVDLLNRSL 352 (388)
T ss_pred CceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987422 222233 99999999865 333344444444444
No 43
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.96 E-value=2.2e-27 Score=243.93 Aligned_cols=342 Identities=14% Similarity=0.122 Sum_probs=178.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC--CCceeecceeChhhHHhh--ccccccCCccccccc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL--GAHILSGAIIDPRSIFEL--FPKEKLNKLFNTPVI 96 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~--g~~~~~G~~~~~~~l~~l--~~~~~~~~~~~~~~~ 96 (561)
|.+||+||||||+||++|+.|++. |++|+||||.+.. ..... .+.+.+.+++-+ ++.|. ........
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~-a~~l~~~~~~~L~~lGl~~--~l~~~~~~ 71 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQSRDYVLGRIR-AGVLEQGTVDLLREAGVDE--RMDREGLV 71 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHC------CCCEEEEECCCCcccCCcee-EeeECHHHHHHHHHCCChH--HHHhcCce
Confidence 568999999999999999999999 9999999999853 12222 334666654422 22222 00000011
Q ss_pred hhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14497 97 EERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
...+.+........++ ++............+..+.+.|.+++.+.|+.++++++++.+...++. .+.|.+..
T Consensus 72 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~-~~~V~~~~---- 143 (390)
T TIGR02360 72 HEGTEIAFDGQRFRID---LKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGD-RPYVTFER---- 143 (390)
T ss_pred ecceEEeeCCEEEEEe---ccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCC-ccEEEEEE----
Confidence 1111111111111111 111000011223457789999999998889999999988877542222 23344420
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCC-CccccceeEEEEeeCCCccCCCcEEEEeccCCCC
Q psy14497 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKD-PQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDY 255 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 255 (561)
+|+ ..++++|+||+|||.+|.+|+++ +...... ...+..++..+....+. ..... .+.+
T Consensus 144 -~g~-------~~~i~adlvIGADG~~S~VR~~l----~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~-~~~~----- 203 (390)
T TIGR02360 144 -DGE-------RHRLDCDFIAGCDGFHGVSRASI----PAEVLKEFERVYPFGWLGILSETPP--VSHEL-IYSN----- 203 (390)
T ss_pred -CCe-------EEEEEeCEEEECCCCchhhHHhc----CcccceeeeccCCcceEEEecCCCC--CCCce-EEEe-----
Confidence 111 13689999999999999999883 2222111 11111222222211111 11111 1110
Q ss_pred CCCceEEEEEcC-CCeEEEEEEecCCCCCCCCChHHHHHHhhh--ChhHHHhhcCCeeeeecceeeccCCCccCCeeecC
Q psy14497 256 KTYGGGFLYHME-NNQISIGYIISLDYKNPYLSPFEEFQRYKT--HPKICKILKGGKRISYGARTITTGGLQSLPEFIFD 332 (561)
Q Consensus 256 ~~~g~~~~~~~~-~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (561)
......+++.. ++...+-+........+........+.+.. .+.+.+.+..+.... ....+... ...++|+.+
T Consensus 204 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~~~~g 279 (390)
T TIGR02360 204 -HERGFALCSMRSATRSRYYVQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIE--KSIAPLRS-FVCEPMQYG 279 (390)
T ss_pred -CCCceEEEeccCCCcceEEEEcCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCccc--eeeeeHHh-hccccCccC
Confidence 11111233332 121111112211110111111111111111 122332322221110 01111111 124567889
Q ss_pred CEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 333 GGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 333 ~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|++|+|||||.|+|+.|||+|+||+||..||+.|..... .+...+|..|++.++.. +....+.++.+..++
T Consensus 280 rvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~-~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~ 350 (390)
T TIGR02360 280 RLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ-EGSSAGIEGYSARALAR-VWKAERFSWWMTSLL 350 (390)
T ss_pred CEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999977543 22323499999988765 456666676666665
No 44
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.96 E-value=2.2e-27 Score=246.63 Aligned_cols=341 Identities=14% Similarity=0.146 Sum_probs=191.0
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCC-CcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcccc-----ccc
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKE-IKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNT-----PVI 96 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G-~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~-----~~~ 96 (561)
.+|+|||||||||++|+.|++. | ++|+||||.+.++. ...|..+.+.++..+ ..++....+.. ...
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~------g~~~v~v~Er~~~~~~-~G~gi~l~~~~~~~L-~~lg~~~~~~~~~~~~~~~ 72 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH------SHLNVQLFEAAPAFGE-VGAGVSFGANAVRAI-VGLGLGEAYTQVADSTPAP 72 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEecCCcCCC-CccceeeCccHHHHH-HHcCChhHHHHHhcCCCcc
Confidence 3699999999999999999999 8 69999999987643 334455677665533 22221100000 000
Q ss_pred hhh--hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14497 97 EER--FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 97 ~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
... +.+.+........ .... ...+...++|.+|.+.|.+.+. ++.++++++|+++..++++ +.|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--~~v~~---- 140 (414)
T TIGR03219 73 WQDIWFEWRNGSDASYLG-ATIA---PGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEE--VQVLF---- 140 (414)
T ss_pred CcceeEEEEecCccceee-eecc---ccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCc--EEEEE----
Confidence 000 1111110000000 0000 0122346899999999998774 3568899999999865333 33443
Q ss_pred cccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCcccc-ceeEEEEeeCC---C----ccCCCc--
Q psy14497 175 INKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYS-LGIKELWTINP---K----LHKKGL-- 244 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~~~~---~----~~~~~~-- 244 (561)
++|.++++|+||+|||.+|.+|+.+....+... ..+...+ ..+..++.... . ...+..
T Consensus 141 -----------~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~~-~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 208 (414)
T TIGR03219 141 -----------TDGTEYRCDLLIGADGIKSALRDYVLQGQGQAP-VRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVD 208 (414)
T ss_pred -----------cCCCEEEeeEEEECCCccHHHHHHhcCccCCCC-CCccccCcEEEEEEeeHHHHhhhhccccccccccc
Confidence 456789999999999999999988653222111 1121111 22332222110 0 000000
Q ss_pred EEEEeccCCCCCCCceEEEEEcCCCeE-EEEEEecCC------CC-----CCCCChHHHHHHhhh-ChhHHHhhcCCeee
Q psy14497 245 VIHTIGWPLDYKTYGGGFLYHMENNQI-SIGYIISLD------YK-----NPYLSPFEEFQRYKT-HPKICKILKGGKRI 311 (561)
Q Consensus 245 ~~~~~~~p~~~~~~g~~~~~~~~~~~~-~vg~~~~~~------~~-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 311 (561)
.... | . +..+..+.||..++.. .+....... +. .......+.++.|.. +|.+.++++.....
T Consensus 209 ~~~~--~-~--~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~ 283 (414)
T TIGR03219 209 VPQM--Y-L--GLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAP 283 (414)
T ss_pred cceE--E-E--cCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCC
Confidence 0011 1 1 2223344667655543 222221110 00 011123334444442 35566665432211
Q ss_pred eecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhc-CCCccchhhHHHHHhhch
Q psy14497 312 SYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICS-NNKFNKLITYKTSFQASW 390 (561)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~-~~~~~~l~~y~~~~~~~~ 390 (561)
.. ..+. ....+++|+.+|++|+|||||.|+|+.|||+|+||+||..||+.|...... .+...+|+.|++.++..
T Consensus 284 ~~--~~~~--~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r- 358 (414)
T TIGR03219 284 TL--WALH--DLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPR- 358 (414)
T ss_pred Cc--eeee--ecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHH-
Confidence 11 1111 123467899999999999999999999999999999999999999765322 22323499999999865
Q ss_pred hhHhhhhhhccchhh
Q psy14497 391 LYKELYKARNFKPAM 405 (561)
Q Consensus 391 ~~~~~~~~~~~~~~~ 405 (561)
+.+.++.++.+.+++
T Consensus 359 ~~~~~~~s~~~~~~~ 373 (414)
T TIGR03219 359 ACRVQRTSREAGELY 373 (414)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666666655544
No 45
>PRK06847 hypothetical protein; Provisional
Probab=99.96 E-value=4.6e-27 Score=241.46 Aligned_cols=335 Identities=15% Similarity=0.133 Sum_probs=187.2
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccchhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~ 100 (561)
..||+|||||||||++|+.|++. |++|+|||+.+.+.. ...|..+.+..+..+ ..+. .............+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~-~g~g~~l~~~~~~~l-~~~gl~~~~~~~~~~~~~~ 75 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA------GIAVDLVEIDPEWRV-YGAGITLQGNALRAL-RELGVLDECLEAGFGFDGV 75 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCcc-CCceeeecHHHHHHH-HHcCCHHHHHHhCCCccce
Confidence 57999999999999999999999 999999999987543 224455666655432 2221 00000000111112
Q ss_pred hhhcCCCCcccCCCCCCcee--ecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccC
Q psy14497 101 LFLSSKKSYKIPSWILPICF--KNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKE 178 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~--~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~ 178 (561)
.+.+..+.... ....+... .......++|..|.+.|.+.+.+.|++++++++|+++..++++ +.|.+
T Consensus 76 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~-------- 144 (375)
T PRK06847 76 DLFDPDGTLLA-ELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTF-------- 144 (375)
T ss_pred EEECCCCCEEE-ecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEE--------
Confidence 22222221110 00001000 0022456899999999999998889999999999999765332 33444
Q ss_pred CceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccc-eeEEEEeeCCCccCCCcEEEEeccCCCCCC
Q psy14497 179 GIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSL-GIKELWTINPKLHKKGLVIHTIGWPLDYKT 257 (561)
Q Consensus 179 g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 257 (561)
++|.++++|+||+|||.+|.+|+.+. +.... +...+. .+... ++......... ... +.
T Consensus 145 -------~~g~~~~ad~vI~AdG~~s~~r~~l~---~~~~~--~~~~g~~~~~~~--~~~~~~~~~~~-~~~------~~ 203 (375)
T PRK06847 145 -------SDGTTGRYDLVVGADGLYSKVRSLVF---PDEPE--PEYTGQGVWRAV--LPRPAEVDRSL-MYL------GP 203 (375)
T ss_pred -------cCCCEEEcCEEEECcCCCcchhhHhc---CCCCC--ceeccceEEEEE--ecCCCCccceE-EEe------CC
Confidence 34568999999999999999988752 22211 111111 11111 12111111111 111 11
Q ss_pred CceEEEEEcCCCeEEEEEEecCCCCCCCCCh---HHHHHH-hhhC--hhHHHhh---cCCeeeeecceeeccCCCccCCe
Q psy14497 258 YGGGFLYHMENNQISIGYIISLDYKNPYLSP---FEEFQR-YKTH--PKICKIL---KGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 258 ~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~---~~~~~~-~~~~--~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
.+...++|.+++...+.+..... ....... .+.+.+ +... |.+..+. .....+.+ .+.......++
T Consensus 204 ~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 278 (375)
T PRK06847 204 TTKAGVVPLSEDLMYLFVTEPRP-DNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVY----RPLETLLVPAP 278 (375)
T ss_pred CcEEEEEcCCCCeEEEEEeccCc-ccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceee----ccHhhccCCCC
Confidence 22234557655544433322211 1111111 122222 2211 1222222 11111111 11111112346
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 329 ~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|..+|++|+|||||.++|+.|||+|+||+||..||+.|.+. .....+|+.|+++++.. +...+..++.....+
T Consensus 279 ~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~---~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~ 351 (375)
T PRK06847 279 WHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH---DSLEAALQAYYARRWER-CRMVVEASARIGRIE 351 (375)
T ss_pred ccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHH-HHHHHHHHHHhhhee
Confidence 88899999999999999999999999999999999998652 23323499999988865 456666666666554
No 46
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.96 E-value=1e-26 Score=240.21 Aligned_cols=338 Identities=14% Similarity=0.073 Sum_probs=186.8
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-----eecceeChhhHHhh--ccccc-cCCcc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-----LSGAIIDPRSIFEL--FPKEK-LNKLF 91 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-----~~G~~~~~~~l~~l--~~~~~-~~~~~ 91 (561)
...+||+||||||||+++|+.|++. |++|+|||+.+...... .....+.+..++.+ ++.|. .....
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~------G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~ 76 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQH------GFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMR 76 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcC------CCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhh
Confidence 4569999999999999999999999 99999999986432110 01123555554322 23232 00000
Q ss_pred ccccchhhhhhhc-CCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEE
Q psy14497 92 NTPVIEERFLFLS-SKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIA 169 (561)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~ 169 (561)
..+.. .+.... ....+.+...... ....+|.++|..|.+.|.+.+.+. |++++++++|+++..++++ +.|.
T Consensus 77 ~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~ 149 (391)
T PRK08020 77 SHPYR--RLETWEWETAHVVFDAAELK---LPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELT 149 (391)
T ss_pred Ccccc--eEEEEeCCCCeEEecccccC---CCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEE
Confidence 00000 000000 0111111100010 012367899999999999998875 9999999999999765332 3444
Q ss_pred ecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEe
Q psy14497 170 TNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTI 249 (561)
Q Consensus 170 ~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (561)
+ ++|.++++|+||+|||.+|.+|+. +++...... ....++...+..+. ...+..++.+
T Consensus 150 ~---------------~~g~~~~a~~vI~AdG~~S~vR~~----~~~~~~~~~-y~~~~~~~~~~~~~--~~~~~~~~~~ 207 (391)
T PRK08020 150 L---------------ADGEEIQAKLVIGADGANSQVRQM----AGIGVHGWQ-YRQSCMLISVKCEN--PPGDSTWQQF 207 (391)
T ss_pred E---------------CCCCEEEeCEEEEeCCCCchhHHH----cCCCccccC-CCceEEEEEEEecC--CCCCEEEEEE
Confidence 4 235589999999999999999888 454431110 00111221222221 1223233332
Q ss_pred ccCCCCCCCceEEEEEcCCCeEEEEEEecCCCC-C-CCCChHHHHH-HhhhChhHHHhhcCCeeeeecceeeccCCCccC
Q psy14497 250 GWPLDYKTYGGGFLYHMENNQISIGYIISLDYK-N-PYLSPFEEFQ-RYKTHPKICKILKGGKRISYGARTITTGGLQSL 326 (561)
Q Consensus 250 ~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~-~-~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (561)
.+ .|...++|..++..++.+....... . ...+. +.+. .+.. .+.+.+. +........++.. ....
T Consensus 208 ~~------~g~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~l~~--~~~~~~~--~~~~~~~~~~pl~-~~~~ 275 (391)
T PRK08020 208 TP------SGPRAFLPLFDNWASLVWYDSPARIRQLQAMSM-AQLQQEIAA--HFPARLG--AVTPVAAGAFPLT-RRHA 275 (391)
T ss_pred cC------CCCEEEeECCCCcEEEEEECCHHHHHHHHCCCH-HHHHHHHHH--Hhhhhcc--ceEeccccEeecc-eeeh
Confidence 11 1223356776666666554321100 0 00111 1221 1111 0111111 1111111122221 1235
Q ss_pred CeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC-C-ccc-hhhHHHHHhhchhhHhhhhhhccch
Q psy14497 327 PEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN-K-FNK-LITYKTSFQASWLYKELYKARNFKP 403 (561)
Q Consensus 327 ~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~-~-~~~-l~~y~~~~~~~~~~~~~~~~~~~~~ 403 (561)
++|..+|++|+|||||.++|+.|||+|+||+||..||+.|.+....+. . ... |+.|++.++.. ....+.....+.+
T Consensus 276 ~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~ 354 (391)
T PRK08020 276 LQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMAD-NLLMQSGMDLFYA 354 (391)
T ss_pred hhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999988754332 2 223 99999888764 2233333343444
Q ss_pred hh
Q psy14497 404 AM 405 (561)
Q Consensus 404 ~~ 405 (561)
.|
T Consensus 355 ~~ 356 (391)
T PRK08020 355 GF 356 (391)
T ss_pred HH
Confidence 44
No 47
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.96 E-value=4.5e-27 Score=241.67 Aligned_cols=334 Identities=13% Similarity=0.127 Sum_probs=181.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc-e----eecceeChhhHHhh--ccccc-cCCcccc
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH-I----LSGAIIDPRSIFEL--FPKEK-LNKLFNT 93 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~-~----~~G~~~~~~~l~~l--~~~~~-~~~~~~~ 93 (561)
.+||+||||||+||++|+.|++. |++|+|||+.+..... . .....+.+.+++-+ ++.|. .......
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~ 76 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ------GRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVC 76 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC------CCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCC
Confidence 48999999999999999999999 9999999987532110 0 01125667665432 33332 1000000
Q ss_pred ccchhhhhhhcC-CCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14497 94 PVIEERFLFLSS-KKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 94 ~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
+.. .+...+. .....+....+. ....+|.+.+..|.+.|.+++.+ .|++++++++|++++.++++ +.|.+
T Consensus 77 ~~~--~~~~~~~~~~~~~~~~~~~~---~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~- 148 (384)
T PRK08849 77 PYK--RLETWEHPECRTRFHSDELN---LDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTL- 148 (384)
T ss_pred ccc--eEEEEeCCCceEEecccccC---CCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEE-
Confidence 111 1111111 111111110110 01125778888899999998866 47999999999999876443 23443
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCC-CccccceeEEEEeeCCCccCCCcEEEEec
Q psy14497 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKD-PQTYSLGIKELWTINPKLHKKGLVIHTIG 250 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (561)
++|.++++|+||+|||.+|.+|+. +++..... ...+++ +..+.......+.....+
T Consensus 149 --------------~~g~~~~~~lvIgADG~~S~vR~~----~gi~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~- 205 (384)
T PRK08849 149 --------------ESGAEIEAKWVIGADGANSQVRQL----AGIGITAWDYRQHCM----LINVETEQPQQDITWQQF- 205 (384)
T ss_pred --------------CCCCEEEeeEEEEecCCCchhHHh----cCCCceeccCCCeEE----EEEEEcCCCCCCEEEEEe-
Confidence 446789999999999999999988 44432111 111111 111111111222222221
Q ss_pred cCCCCCCCceEEEEEcCCCeEEEEEEecCC-C-CCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCe
Q psy14497 251 WPLDYKTYGGGFLYHMENNQISIGYIISLD-Y-KNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPE 328 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
+|. |...++|..++...+-+..... . .....+..+..+.+... +...+..-..... ...+. .....++
T Consensus 206 ~~~-----g~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~--~~~~l-~~~~~~~ 275 (384)
T PRK08849 206 TPS-----GPRSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRH--FPAELGEIKVLQH--GSFPL-TRRHAQQ 275 (384)
T ss_pred CCC-----CCEEEeEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHH--hhhhhCcEEeccc--eEeec-cccccch
Confidence 211 1112356644443333322110 0 00011222222222211 1111111111111 11221 1234568
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 329 ~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|..+|++|+|||||.|+|+.|||+|+||+||..|++.|... .......|+.|++.++.. ....+..++.+.++|
T Consensus 276 ~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~--~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~ 349 (384)
T PRK08849 276 YVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ--GVLNDASFARYERRRRPD-NLLMQTGMDLFYKTF 349 (384)
T ss_pred hccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999887542 112222399999998865 344455555555555
No 48
>PTZ00367 squalene epoxidase; Provisional
Probab=99.96 E-value=6.4e-27 Score=247.17 Aligned_cols=354 Identities=14% Similarity=0.153 Sum_probs=194.2
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcc-ccccc
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLF-NTPVI 96 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~-~~~~~ 96 (561)
+.+.++||+||||||+|+++|+.|++. |++|+|+|+.+........|..+.|.+++.+ ..++....+ .....
T Consensus 29 ~~~~~~dViIVGaGiaGlalA~aLar~------G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L-~~LGL~d~l~~i~~~ 101 (567)
T PTZ00367 29 RTNYDYDVIIVGGSIAGPVLAKALSKQ------GRKVLMLERDLFSKPDRIVGELLQPGGVNAL-KELGMEECAEGIGMP 101 (567)
T ss_pred ccccCccEEEECCCHHHHHHHHHHHhc------CCEEEEEccccccccchhhhhhcCHHHHHHH-HHCCChhhHhhcCcc
Confidence 344679999999999999999999999 9999999998621111124666777765533 222200000 00111
Q ss_pred hhhhhhhcCCCC-cccCCCCCCceeecCCcEEeeHHHHHHHHHHHH---HHCCCEEEcCceEeEEEEcCC---CCEEEEE
Q psy14497 97 EERFLFLSSKKS-YKIPSWILPICFKNHGNYIISLSDLVRWMGKKA---ENMGIDIFSGFSASEILYDSK---NNVCGIA 169 (561)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a---~~~Gv~i~~g~~v~~i~~~~~---g~v~~V~ 169 (561)
...+.+.+.++. ..++ ++ ....++.++|++|.+.|.+.+ ...+++++. .+|+++..+++ .++.+|+
T Consensus 102 ~~~~~v~~~~G~~~~i~---~~---~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~ 174 (567)
T PTZ00367 102 CFGYVVFDHKGKQVKLP---YG---AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVE 174 (567)
T ss_pred eeeeEEEECCCCEEEec---CC---CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEE
Confidence 112222222221 1111 11 112356788999999999987 346899965 47888765432 2366666
Q ss_pred eccccc----------ccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCC--CCCccccceeEEEEeeCC
Q psy14497 170 TNNFGI----------NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNK--KDPQTYSLGIKELWTINP 237 (561)
Q Consensus 170 ~~~~~~----------~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~--~~~~~~~~~~~~~~~~~~ 237 (561)
+...+. +.+.+...+..++.+++||+||+|||.+|.+|+++ +.... ...+.+ .+.. +.....
T Consensus 175 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l----~~~~~~~~~~s~~-~g~~-~~~~~l 248 (567)
T PTZ00367 175 YTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRY----QHYTPASENHSHF-VGLV-LKNVRL 248 (567)
T ss_pred EecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHc----cCCCCCcCcceEE-EEEE-EecccC
Confidence 533210 00011123344577899999999999999999884 33221 111111 1211 011110
Q ss_pred CccCCCcEEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCC-ChHHHHHHh-hh--ChhHHHhh----cC-C
Q psy14497 238 KLHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYL-SPFEEFQRY-KT--HPKICKIL----KG-G 308 (561)
Q Consensus 238 ~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~-~~~~~~~~~-~~--~~~~~~~l----~~-~ 308 (561)
+ .++.. +.+ + +..+-.++||.+++...+.+...... .+.. ...+.+... .. .+.+.+.+ .. +
T Consensus 249 p--~~~~~-~v~---~--g~~gpi~~yPl~~~~~r~lv~~~~~~-~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~ 319 (567)
T PTZ00367 249 P--KEQHG-TVF---L--GKTGPILSYRLDDNELRVLVDYNKPT-LPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTK 319 (567)
T ss_pred C--CCCee-EEE---E--cCCceEEEEEcCCCeEEEEEEecCCc-CCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccC
Confidence 1 11111 221 1 23345678899888777665543221 1111 111222211 10 11222222 11 1
Q ss_pred eeeeecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHh--cCCC------ccchh
Q psy14497 309 KRISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKIC--SNNK------FNKLI 380 (561)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~--~~~~------~~~l~ 380 (561)
.. +..+...+ +...++.+|++|+|||||.++|+.|||+|+||+||..||+.|..... ..+. ...|+
T Consensus 320 ~l-----~~~p~~~~-p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~ 393 (567)
T PTZ00367 320 RI-----RSMPNARY-PPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQ 393 (567)
T ss_pred Ce-----EEeeHhhC-CCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHH
Confidence 11 11122111 12245678999999999999999999999999999999999975321 1111 11266
Q ss_pred ----hHHHHHhhchhhHhhhhhhccchhhhh
Q psy14497 381 ----TYKTSFQASWLYKELYKARNFKPAMKK 407 (561)
Q Consensus 381 ----~y~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (561)
.|++.|+.. .......++.+.++|..
T Consensus 394 ~~~~~Y~~~Rk~~-a~~i~~ls~aL~~lf~~ 423 (567)
T PTZ00367 394 AAILSYARNRKTH-ASTINILSWALYSVFSS 423 (567)
T ss_pred HhHHHHHHHhhhh-HHHHHHHHHHHHHHhCh
Confidence 999888765 34555555666666643
No 49
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=1.9e-26 Score=238.74 Aligned_cols=342 Identities=14% Similarity=0.144 Sum_probs=191.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC---ce-eecceeChhhHHhh--ccccccCCccccc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA---HI-LSGAIIDPRSIFEL--FPKEKLNKLFNTP 94 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~---~~-~~G~~~~~~~l~~l--~~~~~~~~~~~~~ 94 (561)
+.+||+|||||||||++|+.|+++. ..|++|+||||...... .. ..+..+.+.++..+ ++.|. ......
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~---~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~--~~~~~~ 76 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS---HGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQ--ALADCA 76 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc---cCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChh--hhHhhc
Confidence 5699999999999999999998741 12999999999632211 10 12445666554432 22222 000000
Q ss_pred cchhhhhhhcCCC--CcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14497 95 VIEERFLFLSSKK--SYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 95 ~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
.....+.+.+... ...+...... ....++.+.|..|.+.|.+.+.+ .|++++++++|+++..++++ +.|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~ 151 (395)
T PRK05732 77 TPITHIHVSDRGHAGFVRLDAEDYG---VPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLD 151 (395)
T ss_pred CCccEEEEecCCCCceEEeehhhcC---CCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEEC
Confidence 0001111111100 0001000000 01225778999999999998876 58999999999999764332 335542
Q ss_pred ccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEecc
Q psy14497 172 NFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGW 251 (561)
Q Consensus 172 ~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (561)
+|.++++|+||+|||.+|.+++. +++.....+... ..+...+.... ...+.....+
T Consensus 152 ---------------~g~~~~a~~vI~AdG~~S~vr~~----~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~-- 207 (395)
T PRK05732 152 ---------------DGETLTGRLLVAADGSHSALREA----LGIDWQQHPYEQ-VAVIANVTTSE--AHQGRAFERF-- 207 (395)
T ss_pred ---------------CCCEEEeCEEEEecCCChhhHHh----hCCCccceecCC-EEEEEEEEecC--CCCCEEEEee--
Confidence 34579999999999999999887 444432222111 11221122111 1122222221
Q ss_pred CCCCCCCceEEEEEcCCCeEEEEEEecCCCCC--CCCChHHHHHHhhhChhHHHhhcCCeeeeecc-eeeccCCCccCCe
Q psy14497 252 PLDYKTYGGGFLYHMENNQISIGYIISLDYKN--PYLSPFEEFQRYKTHPKICKILKGGKRISYGA-RTITTGGLQSLPE 328 (561)
Q Consensus 252 p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 328 (561)
...+..+++|.+++...+.+..+.+... ...+..+.++.+... +...+. ....... ...+. .....++
T Consensus 208 ----~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~l-~~~~~~~ 278 (395)
T PRK05732 208 ----TEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQA--FGWRLG--RITHAGKRSAYPL-ALVTAAQ 278 (395)
T ss_pred ----cCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HHhhhc--ceeecCCcceecc-cccchhh
Confidence 1223456778887777665554321100 011122222222211 000010 1111000 01111 1123456
Q ss_pred eecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC-Cc-cc-hhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 329 FIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN-KF-NK-LITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 329 ~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~-~~-~~-l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
|..+|++|+|||||.++|+.|||+|+||+||..||+.|...+.... .. .+ |+.|+++++.. ....+..++.+.+++
T Consensus 279 ~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~-~~~~~~~~~~~~~~~ 357 (395)
T PRK05732 279 QISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQD-REATIGFTDGLVRLF 357 (395)
T ss_pred hccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999988765432 21 23 99999988865 455667777777766
Q ss_pred h
Q psy14497 406 K 406 (561)
Q Consensus 406 ~ 406 (561)
.
T Consensus 358 ~ 358 (395)
T PRK05732 358 A 358 (395)
T ss_pred c
Confidence 3
No 50
>PLN02985 squalene monooxygenase
Probab=99.96 E-value=3.9e-26 Score=240.37 Aligned_cols=344 Identities=17% Similarity=0.218 Sum_probs=192.1
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhh--ccccc-cCCccccc
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFEL--FPKEK-LNKLFNTP 94 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l--~~~~~-~~~~~~~~ 94 (561)
+.+..+||+||||||+|+++|+.|++. |++|+|+||...... ...|..+.|..+..+ ++.+. ......
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~------G~~V~vlEr~~~~~~-~~~g~~L~p~g~~~L~~LGl~d~l~~~~~-- 109 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKD------GRRVHVIERDLREPE-RMMGEFMQPGGRFMLSKLGLEDCLEGIDA-- 109 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHc------CCeEEEEECcCCCCc-cccccccCchHHHHHHHcCCcchhhhccC--
Confidence 456679999999999999999999999 999999999864322 224666777654422 22222 000000
Q ss_pred cchhhhhhhcCCCCcccCCCCCCcee----ecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEE
Q psy14497 95 VIEERFLFLSSKKSYKIPSWILPICF----KNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIA 169 (561)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~i~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~ 169 (561)
.....+.+.........+ ++... ....++.++|.+|.+.|.+++.+. ||+++.+ +++++..+ ++.+.+|+
T Consensus 110 ~~~~~~~v~~~g~~~~~~---~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~ 184 (514)
T PLN02985 110 QKATGMAVYKDGKEAVAP---FPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVT 184 (514)
T ss_pred cccccEEEEECCEEEEEe---CCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEE
Confidence 111122222221111111 11100 012257899999999999999775 7998866 57676554 55566776
Q ss_pred ecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEe
Q psy14497 170 TNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTI 249 (561)
Q Consensus 170 ~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (561)
+.+ .+|+. .+++||+||+|||.+|.+|+.+. ...... ..+..++. ........++.. |.+
T Consensus 185 ~~~----~dG~~-------~~~~AdLVVgADG~~S~vR~~l~----~~~~~~-~s~~~~~~---~~~~~~~~~~~~-~~~ 244 (514)
T PLN02985 185 YKN----SAGEE-------TTALAPLTVVCDGCYSNLRRSLN----DNNAEV-LSYQVGYI---SKNCRLEEPEKL-HLI 244 (514)
T ss_pred EEc----CCCCE-------EEEECCEEEECCCCchHHHHHhc----cCCCcc-eeEeEEEE---EccccCCCCCcc-eEE
Confidence 532 12221 25679999999999999999843 222111 12222221 111111112211 221
Q ss_pred ccCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhh------h-ChhHHHhhcCC-eeeeecceeeccC
Q psy14497 250 GWPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYK------T-HPKICKILKGG-KRISYGARTITTG 321 (561)
Q Consensus 250 ~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~l~~~-~~~~~~~~~~~~~ 321 (561)
+ +..+...+||.+++.+.+.+....+.. +.... ..+..+. . .+.+.+.+..+ +.. ...+..+..
T Consensus 245 ---~--~~~~~~l~ypi~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~-~~~~~~p~~ 316 (514)
T PLN02985 245 ---M--SKPSFTMLYQISSTDVRCVFEVLPDNI-PSIAN-GEMSTFVKNTIAPQVPPKLRKIFLKGIDEG-AHIKVVPTK 316 (514)
T ss_pred ---c--CCCceEEEEEeCCCeEEEEEEEeCCCC-CCcCh-hhHHHHHHhccccccCHHHHHHHHhhcccc-cceeecCcc
Confidence 1 223345577777776666555443221 11111 1222221 0 12333333210 000 001111211
Q ss_pred CCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHh--c-CCCccchhhHHHHHhhchhhHhhhhh
Q psy14497 322 GLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKIC--S-NNKFNKLITYKTSFQASWLYKELYKA 398 (561)
Q Consensus 322 ~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~--~-~~~~~~l~~y~~~~~~~~~~~~~~~~ 398 (561)
.. +...+..+|++|+|||||.++|+.|||+|+|++||..|++.|...-. . .+...+|+.|++.|+.. +......+
T Consensus 317 ~l-~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r-~~~i~~la 394 (514)
T PLN02985 317 RM-SATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM-SATVNTLG 394 (514)
T ss_pred cc-cccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc-hhHHHHHH
Confidence 11 12234558999999999999999999999999999999999975311 1 11122389999888865 45556666
Q ss_pred hccchhh
Q psy14497 399 RNFKPAM 405 (561)
Q Consensus 399 ~~~~~~~ 405 (561)
+.+.+.|
T Consensus 395 ~al~~~f 401 (514)
T PLN02985 395 NAFSQVL 401 (514)
T ss_pred HHHHHHH
Confidence 6666666
No 51
>PRK07236 hypothetical protein; Provisional
Probab=99.96 E-value=6.2e-27 Score=240.93 Aligned_cols=318 Identities=13% Similarity=0.102 Sum_probs=171.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
++..+|+||||||+||++|+.|++. |++|+||||.+.+......|..+.+..++ ++..++.............
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~g~gi~l~~~~~~-~l~~lg~~~~~~~~~~~~~ 76 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA------GWDVDVFERSPTELDGRGAGIVLQPELLR-ALAEAGVALPADIGVPSRE 76 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCcCCCCceeEeCHHHHH-HHHHcCCCcccccccCccc
Confidence 4569999999999999999999999 99999999987542222234456776544 3333331100011111111
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
..+.+..+.. +..... ....+.+..+.+.|.+.+ .+++++++++|++++.++++ +.|.+
T Consensus 77 ~~~~~~~g~~-~~~~~~-------~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~--v~v~~--------- 135 (386)
T PRK07236 77 RIYLDRDGRV-VQRRPM-------PQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDR--VTARF--------- 135 (386)
T ss_pred eEEEeCCCCE-eeccCC-------CccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCe--EEEEE---------
Confidence 1222222211 110011 112356778888887755 35789999999999875332 23333
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEe---eCCCcc--CCCcEEEEeccCCC
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWT---INPKLH--KKGLVIHTIGWPLD 254 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~p~~ 254 (561)
++|.++++|+||+|||.+|.+|+.+. +.... ....+ ..+..+.. ++.... ..... +.+ .
T Consensus 136 ------~~g~~~~ad~vIgADG~~S~vR~~l~---~~~~~-~~~g~-~~~~~~v~~~~~~~~~~~~~~~~~-~~~---~- 199 (386)
T PRK07236 136 ------ADGRRETADLLVGADGGRSTVRAQLL---PDVRP-TYAGY-VAWRGLVDEAALPPEARAALRDRF-TFQ---L- 199 (386)
T ss_pred ------CCCCEEEeCEEEECCCCCchHHHHhC---CCCCC-CcCCe-EEEEEecchHHcCchhhhhcccce-EEE---E-
Confidence 45678999999999999999998853 21111 11111 11221111 111000 00001 110 0
Q ss_pred CCCCceEEEEEcCC---------CeEEEEEEecCCC----------------C---CCCCChHHHHHHh----h--hChh
Q psy14497 255 YKTYGGGFLYHMEN---------NQISIGYIISLDY----------------K---NPYLSPFEEFQRY----K--THPK 300 (561)
Q Consensus 255 ~~~~g~~~~~~~~~---------~~~~vg~~~~~~~----------------~---~~~~~~~~~~~~~----~--~~~~ 300 (561)
+..+..+.||..+ ....+.+....+. . .+.....+.++.+ . -.|.
T Consensus 200 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (386)
T PRK07236 200 -GPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPV 278 (386)
T ss_pred -cCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHH
Confidence 1111223333321 1122222221110 0 0000111122222 1 2244
Q ss_pred HHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchh
Q psy14497 301 ICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLI 380 (561)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~ 380 (561)
+..+++....... . +... ...++|..+|++|+|||||.++|+.|||+|+||+||..||+.|.... .+...+|.
T Consensus 279 ~~~~~~~~~~~~~--~--~~~~-~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~--~~~~~al~ 351 (386)
T PRK07236 279 FAELVEATAQPFV--Q--AIFD-LEVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA--GDIDAALA 351 (386)
T ss_pred HHHHHhhCcCchh--h--hhhc-ccCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc--cchHHHHH
Confidence 5555543221110 0 1111 12467888999999999999999999999999999999999997631 22323499
Q ss_pred hHHHHHhhc
Q psy14497 381 TYKTSFQAS 389 (561)
Q Consensus 381 ~y~~~~~~~ 389 (561)
.|++.+++.
T Consensus 352 ~Ye~~R~~r 360 (386)
T PRK07236 352 AWEAERLAV 360 (386)
T ss_pred HHHHHhhHH
Confidence 999999865
No 52
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.95 E-value=6.7e-26 Score=240.21 Aligned_cols=347 Identities=12% Similarity=0.080 Sum_probs=184.1
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC-CCc--eeecceeChhhHHhh--ccccccCCcccc
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL-GAH--ILSGAIIDPRSIFEL--FPKEKLNKLFNT 93 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~-g~~--~~~G~~~~~~~l~~l--~~~~~~~~~~~~ 93 (561)
+...++|+|||||||||++|+.|++. |++|+||||.+.. ... ...+..+.+++++.+ ++.+........
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~------Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~ 151 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK------GFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEA 151 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc------CCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhh
Confidence 35679999999999999999999999 9999999997631 111 112345667665533 211110000000
Q ss_pred -ccchhhh-hhhcC-CCC--cccCCCCCCceeec-CCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEE
Q psy14497 94 -PVIEERF-LFLSS-KKS--YKIPSWILPICFKN-HGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCG 167 (561)
Q Consensus 94 -~~~~~~~-~~~~~-~~~--~~~~~~~~p~~~~~-~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~ 167 (561)
......+ .+.+. .+. ..++.. .+....+ ...+.|+|..|.+.|.+.+.. ..++++++|+++..+++ . +.
T Consensus 152 g~~~~~~i~~~~d~~~G~~~~~~~~~-~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~d-~-Vt 226 (668)
T PLN02927 152 GCITGDRINGLVDGISGSWYVKFDTF-TPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSGD-K-VT 226 (668)
T ss_pred cCcccceeeeeeecCCCceEeecccc-ccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeCC-E-EE
Confidence 0000011 01111 111 011100 0100001 125689999999999876532 24678999999976533 2 23
Q ss_pred EEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEE
Q psy14497 168 IATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIH 247 (561)
Q Consensus 168 V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (561)
|.+ ++|.++++|+||+|||.+|.+|+.+. +.... ....+ ..+..+....+.... .....
T Consensus 227 V~~---------------~dG~ti~aDlVVGADG~~S~vR~~l~---g~~~~-~~sG~-~~~rgi~~~~p~~~~-~~~~~ 285 (668)
T PLN02927 227 VVL---------------ENGQRYEGDLLVGADGIWSKVRNNLF---GRSEA-TYSGY-TCYTGIADFIPADIE-SVGYR 285 (668)
T ss_pred EEE---------------CCCCEEEcCEEEECCCCCcHHHHHhc---CCCCC-cccce-EEEEEEcCCCccccc-ccceE
Confidence 444 44668999999999999999988863 33221 11111 222222222111110 10011
Q ss_pred EeccCCCCCCCceEEEEEcCCCeEEEEEEecCCC--CC-CCCChHHHHHHhhhC-hhHHHhhcCCeeeeecceeeccCCC
Q psy14497 248 TIGWPLDYKTYGGGFLYHMENNQISIGYIISLDY--KN-PYLSPFEEFQRYKTH-PKICKILKGGKRISYGARTITTGGL 323 (561)
Q Consensus 248 ~~~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (561)
. | . +.......++..++.+.+-....... .. +.....+..+.|... +.+.++++....-....+.+. ..
T Consensus 286 ~--~-~--G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iy--d~ 358 (668)
T PLN02927 286 V--F-L--GHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIY--DR 358 (668)
T ss_pred E--E-E--cCCeEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEE--ec
Confidence 1 1 0 11112223344444443322221111 01 111122223333322 556566542211000011111 12
Q ss_pred ccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhc----C---CCccchhhHHHHHhhchhhHhhh
Q psy14497 324 QSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICS----N---NKFNKLITYKTSFQASWLYKELY 396 (561)
Q Consensus 324 ~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~----~---~~~~~l~~y~~~~~~~~~~~~~~ 396 (561)
.+.++|+.+|++|+|||||.|+|+.|||+++||+||..||+.|.+.+.. + +...+|+.|++.++.. +.+.+.
T Consensus 359 ~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~r-v~~i~~ 437 (668)
T PLN02927 359 SPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLR-VAIIHA 437 (668)
T ss_pred cCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHH-HHHHHH
Confidence 2345888999999999999999999999999999999999999876532 1 1212389999988865 445455
Q ss_pred hhhccchhh
Q psy14497 397 KARNFKPAM 405 (561)
Q Consensus 397 ~~~~~~~~~ 405 (561)
.++....++
T Consensus 438 ~ar~a~~~~ 446 (668)
T PLN02927 438 MARMAAIMA 446 (668)
T ss_pred HHHHHHHHH
Confidence 544444444
No 53
>PRK11445 putative oxidoreductase; Provisional
Probab=99.94 E-value=1.6e-24 Score=219.66 Aligned_cols=310 Identities=17% Similarity=0.231 Sum_probs=170.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCC---CceeecceeChhhHHhhccccccCCccccccchh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG---AHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEE 98 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g---~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 98 (561)
.+||+||||||||+++|+.|++. ++|+|+|+.+..+ ....+|+.+.+.++..+ ..++...+........
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L-~~lgl~~~~~~~~~~~ 72 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSF-AKDGLTLPKDVIANPQ 72 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCccccccccCcCcCccCHHHHHHH-HHcCCCCCcceeeccc
Confidence 37999999999999999999874 7999999987643 22236777888766543 2222100000000000
Q ss_pred hhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccC
Q psy14497 99 RFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKE 178 (561)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~ 178 (561)
.+.. ..+.... .+.. ......+.++|.+|+++|.+.+ +.|+++++++.++++..++++ +.|.+.+ +
T Consensus 73 ~~~~----~~~~~~~-~~~~-~~~~~~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~i~~~~~~--~~v~~~~-----~ 138 (351)
T PRK11445 73 IFAV----KTIDLAN-SLTR-NYQRSYINIDRHKFDLWLKSLI-PASVEVYHNSLCRKIWREDDG--YHVIFRA-----D 138 (351)
T ss_pred ccee----eEecccc-cchh-hcCCCcccccHHHHHHHHHHHH-hcCCEEEcCCEEEEEEEcCCE--EEEEEec-----C
Confidence 0000 0000000 0000 0011245699999999999854 578999999999999875443 3344311 1
Q ss_pred CceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCC
Q psy14497 179 GIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTY 258 (561)
Q Consensus 179 g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 258 (561)
|+ ..++++|+||+|||.+|.+|+++. ... ....+ .++...+..... .+... ..+.. ....
T Consensus 139 g~-------~~~i~a~~vV~AdG~~S~vr~~l~----~~~--~~~~~-~~~~~~~~~~~~--~~~~~-~~f~~---~~~~ 198 (351)
T PRK11445 139 GW-------EQHITARYLVGADGANSMVRRHLY----PDH--QIRKY-VAIQQWFAEKHP--VPFYS-CIFDN---EITD 198 (351)
T ss_pred Cc-------EEEEEeCEEEECCCCCcHHhHHhc----CCC--chhhE-EEEEEEecCCCC--CCCcc-eEEec---cCCC
Confidence 11 126899999999999999988843 221 11112 233332222211 11111 01110 1234
Q ss_pred ceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHh-hcCCeeeeecceeeccCCCccCCe--eecCCEE
Q psy14497 259 GGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKI-LKGGKRISYGARTITTGGLQSLPE--FIFDGGA 335 (561)
Q Consensus 259 g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~ 335 (561)
++.|.+|.++ ...+|...+. ....+.++.+.. .+... ...++.+......++.. ...++ +..+|++
T Consensus 199 ~~~W~~p~~~-~~~~g~~~~~------~~~~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vv 267 (351)
T PRK11445 199 CYSWSISKDG-YFIFGGAYPM------KDGRERFETLKE--KLSAFGFQFGKPVKTEACTVLRP--SRWQDFVCGKDNAF 267 (351)
T ss_pred ceEEEeCCCC-cEEecccccc------cchHHHHHHHHH--HHHhcccccccccccccccccCc--ccccccccCCCCEE
Confidence 5678888754 4455433211 112222222111 01110 01111111110001110 01122 2348999
Q ss_pred EEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhc
Q psy14497 336 FIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQAS 389 (561)
Q Consensus 336 lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~ 389 (561)
+||||||.++|++|+|+++|+.||..||+.|.+.. ...++.|++.++.-
T Consensus 268 lVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~-----~~~~~~y~~~~~~~ 316 (351)
T PRK11445 268 LIGEAAGFISPSSLEGISYALDSARILSEVLNKQP-----EKLNTAYWRKTRKL 316 (351)
T ss_pred EEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc-----cchHHHHHHHHHHH
Confidence 99999999999999999999999999999997643 12388999888753
No 54
>KOG2614|consensus
Probab=99.92 E-value=5.5e-25 Score=212.98 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=38.9
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHh
Q psy14497 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKIC 371 (561)
Q Consensus 330 ~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~ 371 (561)
+..+++|+|||||.|.|+.|||+|.|++|+.+||+.|.++..
T Consensus 286 s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 286 SPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred CCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhcc
Confidence 346899999999999999999999999999999999999864
No 55
>PLN02697 lycopene epsilon cyclase
Probab=99.92 E-value=1.3e-22 Score=212.25 Aligned_cols=312 Identities=12% Similarity=0.108 Sum_probs=182.6
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...+||+|||||||||++|+.|++. |++|+|+|+....... .| +....++++ .....+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~------Gl~V~LIe~~~p~~~n--~G--vW~~~l~~l----gl~~~i~------- 164 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL------GLNVGLIGPDLPFTNN--YG--VWEDEFKDL----GLEDCIE------- 164 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC------CCcEEEecCcccCCCc--cc--cchhHHHhc----CcHHHHH-------
Confidence 3469999999999999999999999 9999999986443221 11 111111111 1000000
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
..|. ...+..+... + .........++|..|.+.|.+++.+.|+++ .+++|+++..++++ +..+.+
T Consensus 165 ~~w~--~~~v~~~~~~-~-~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~--------- 229 (529)
T PLN02697 165 HVWR--DTIVYLDDDK-P-IMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVAC--------- 229 (529)
T ss_pred hhcC--CcEEEecCCc-e-eeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEE---------
Confidence 0000 0000010000 0 000111235999999999999999899998 67799998765333 222233
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCC--CCCCccccceeEEEEeeCCCccCCCcEEEEeccC---C-
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDN--KKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWP---L- 253 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~- 253 (561)
.+|.+++|++||+|||.+|. +. .+... ...+.....|+. +++....++++.. ..+.|- +
T Consensus 230 ------~dG~~i~A~lVI~AdG~~S~--rl----~~~~~~~~~~~~Q~a~Gi~--ve~~~~~~d~~~~-vlMD~r~~~~~ 294 (529)
T PLN02697 230 ------EDGRVIPCRLATVASGAASG--RL----LQYEVGGPRVCVQTAYGVE--VEVENNPYDPSLM-VFMDYRDYFKE 294 (529)
T ss_pred ------cCCcEEECCEEEECCCcChh--hh----hccccCCCCcccEEEEEEE--EEecCCCCCcchh-eeecccccccc
Confidence 23568999999999999994 22 12111 111122223333 3333222333332 233321 1
Q ss_pred -----CCCCCceEEEEEcCCCeEEEEEEec-CCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCC
Q psy14497 254 -----DYKTYGGGFLYHMENNQISIGYIIS-LDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLP 327 (561)
Q Consensus 254 -----~~~~~g~~~~~~~~~~~~~vg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 327 (561)
..+.++..|++|.+++++.|..+.- .....+.....+.+..+..+.. +...+.++.....+|.++. ++
T Consensus 295 ~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~L~~~l~~~G----i~~~~i~~~E~g~iPm~g~--~~ 368 (529)
T PLN02697 295 KVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMG----IRILKTYEEEWSYIPVGGS--LP 368 (529)
T ss_pred ccccccCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHHHHHHHHhCC----CCcceEEEEEeeeecCCCC--Cc
Confidence 1123445667799999999954431 1111111112233333332211 2234555566667888663 44
Q ss_pred eeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC---------Cccc-hhhHHHHHhhc
Q psy14497 328 EFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN---------KFNK-LITYKTSFQAS 389 (561)
Q Consensus 328 ~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~---------~~~~-l~~y~~~~~~~ 389 (561)
.. .++++++||||+.++|.+|-|+..++.+|..+|++|++++..++ .+.. ++.|+..|...
T Consensus 369 ~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e 439 (529)
T PLN02697 369 NT-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQE 439 (529)
T ss_pred cc-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHH
Confidence 44 58999999999999999999999999999999999999997664 2233 78888877754
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.91 E-value=4e-22 Score=205.73 Aligned_cols=307 Identities=15% Similarity=0.155 Sum_probs=172.1
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhhh
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFL 103 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (561)
||+||||||||+++|+.|++. |++|+|+|+.+..+.....+ +....+.++ . +..... ..|
T Consensus 1 DviIiGaG~AGl~~A~~la~~------g~~v~liE~~~~~~~~~~~~--~~~~~~~~~----~----~~~~~~---~~~- 60 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP------GLRVQLIEPHPPIPGNHTYG--VWDDDLSDL----G----LADCVE---HVW- 60 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCCCcccc--ccHhhhhhh----c----hhhHHh---hcC-
Confidence 899999999999999999999 99999999987654321111 111111110 0 000000 000
Q ss_pred cCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceec
Q psy14497 104 SSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKK 183 (561)
Q Consensus 104 ~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~ 183 (561)
.....+..+.. ... .......++|..|.+.|.+.+.+.|++++ ..+|+++..+ ++..+.|.+.
T Consensus 61 ~~~~~~~~~~~--~~~-~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~------------ 123 (388)
T TIGR01790 61 PDVYEYRFPKQ--PRK-LGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCA------------ 123 (388)
T ss_pred CCceEEecCCc--chh-cCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeC------------
Confidence 00000000000 000 01224469999999999999998899886 5578887654 2334455553
Q ss_pred ccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCC------C
Q psy14497 184 NFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYK------T 257 (561)
Q Consensus 184 ~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~ 257 (561)
+|.+++||+||+|||.+|.++... .+... ......|+. ++++...+..+.. ..+.|..... .
T Consensus 124 ---~g~~~~a~~VI~A~G~~s~~~~~~---~~~~~---~~q~~~G~~--~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~ 191 (388)
T TIGR01790 124 ---GGQRIQARLVIDARGFGPLVQYVR---FPLNV---GFQVAYGVE--ARLSRPPHGPSSM-VIMDARVDQLAAPELKG 191 (388)
T ss_pred ---CCCEEEeCEEEECCCCchhccccc---CCCCc---eEEEEEEEE--EEEcCCCCCCCce-EEEeccccccccccccC
Confidence 245899999999999999553220 11110 111123332 3333222222322 2222311110 1
Q ss_pred Cc--eEEEEEcCCCeEEEEEEecCCCCCCCCChH---HHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecC
Q psy14497 258 YG--GGFLYHMENNQISIGYIISLDYKNPYLSPF---EEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFD 332 (561)
Q Consensus 258 ~g--~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (561)
.+ ..|++|.+++.+.++...... .+..... +.+..+.... -+...+..+.....+|..+.. + +..+
T Consensus 192 ~~~~f~~~lP~~~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~----g~~~~~i~~~~~~~iP~~~~~--~-~~~~ 262 (388)
T TIGR01790 192 YRPTFLYAMPLGSTRVFIEETSLAD--RPALPRDRLRQRILARLNAQ----GWQIKTIEEEEWGALPVGLPG--P-FLPQ 262 (388)
T ss_pred CCCceEEEeecCCCeEEEEeccccC--CCCCCHHHHHHHHHHHHHHc----CCeeeEEEeeeeEEEecccCC--C-ccCC
Confidence 22 567789988888876443211 1112221 1222221110 011123333334455664432 2 3678
Q ss_pred CEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhc
Q psy14497 333 GGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQAS 389 (561)
Q Consensus 333 ~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~ 389 (561)
|++++|||||.++|.+|+|++.|+.+|..+|+.|.+++..+. ...++.|+..++..
T Consensus 263 rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~-~~~~~~~~~~~~~~ 318 (388)
T TIGR01790 263 RVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSS-ELATAAWDGLWPTE 318 (388)
T ss_pred CeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHhchHH
Confidence 999999999999999999999999999999999999886442 12277887665543
No 57
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.91 E-value=1.3e-23 Score=232.07 Aligned_cols=324 Identities=13% Similarity=0.165 Sum_probs=172.8
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhhh
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFL 103 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (561)
+|+|||||||||++|+.|++. .+|++|+||||.+... ....|..+.+..+..+ ..+. ......... .+...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~----~~G~~V~vlEr~~~~~-~~G~Gi~ls~~~l~~L-~~~~--~~~~~~~~~-~~~~~ 72 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLL----DPAHEVTVVERNRPYD-TFGWGVVFSDATLGNL-RAAD--PVSAAAIGD-AFNHW 72 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHh----CCCCeEEEEecCCCCc-ccCcceEccHHHHHHH-HhcC--HHHHHHHHH-hcccC
Confidence 799999999999999999997 5589999999988642 2334556666665433 2221 000000000 00000
Q ss_pred cCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceec
Q psy14497 104 SSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKK 183 (561)
Q Consensus 104 ~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~ 183 (561)
+. ..+....... ...+.....++|.+|.+.|.+++.+.||+++++++|+++..
T Consensus 73 ~~-~~~~~~g~~~--~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------------------ 125 (765)
T PRK08255 73 DD-IDVHFKGRRI--RSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA------------------------ 125 (765)
T ss_pred Cc-eEEEECCEEE--EECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------------------
Confidence 00 0000000000 00112234689999999999999999999999998865521
Q ss_pred ccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCCCCce--E
Q psy14497 184 NFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYKTYGG--G 261 (561)
Q Consensus 184 ~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--~ 261 (561)
...++|+||+|||.+|.+|+++...++.+.......+ .|.-....+ ....... .+. ..|. .
T Consensus 126 -----~~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~------~w~g~~~~~-~~~~~~~--~~~---~~g~~~~ 188 (765)
T PRK08255 126 -----LAADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRF------VWLGTHKVF-DAFTFAF--EET---EHGWFQA 188 (765)
T ss_pred -----hhcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCce------EEecCCCcc-cceeEEE--Eec---CCceEEE
Confidence 1357899999999999999876544443221111111 011100000 0000000 000 1111 1
Q ss_pred EEEEcCCCeEEEEEEecCC-CC---CCCCChHHHHHH----hhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCC
Q psy14497 262 FLYHMENNQISIGYIISLD-YK---NPYLSPFEEFQR----YKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDG 333 (561)
Q Consensus 262 ~~~~~~~~~~~vg~~~~~~-~~---~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (561)
..||.+++...+-+....+ +. .+..+..+..+. |.......+++.............. .....++|+.++
T Consensus 189 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~~--~~~~~~~w~~gr 266 (765)
T PRK08255 189 HAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWINF--PRVVCERWVHWN 266 (765)
T ss_pred EEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeeec--ceeccCCCccCC
Confidence 2345443333222222111 10 011122222221 1111000111111100000000110 011346888888
Q ss_pred ----EEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHhhchhhHhhhhhhccchhh
Q psy14497 334 ----GAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNKFNKLITYKTSFQASWLYKELYKARNFKPAM 405 (561)
Q Consensus 334 ----v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~ 405 (561)
++|+|||||.++|+.|||+++||+||..||+.|.... .+...+|+.|++.++.. +...++.++....++
T Consensus 267 ~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~--~~~~~al~~ye~~R~~r-~~~~~~~s~~~~~~~ 339 (765)
T PRK08255 267 RRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP--GDLPAALAAYEEERRVE-VLRIQNAARNSTEWF 339 (765)
T ss_pred CcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHHHH-HHHHHHHHHHhCcee
Confidence 9999999999999999999999999999999997641 13323499999999865 455666666655555
No 58
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=99.91 E-value=1.6e-25 Score=169.39 Aligned_cols=80 Identities=30% Similarity=0.629 Sum_probs=71.3
Q ss_pred ccCCC-CCCceEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCC-CCeeEECC
Q psy14497 473 NHDED-QPIHLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPT-QNIEWITP 550 (561)
Q Consensus 473 ~~~~~-~~~h~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~-~~i~~~~p 550 (561)
++..| +++||.++|+..|..+. +++|+.+|||++|++.++ ..+.++|++|+|||||++.||. +.|+|+||
T Consensus 17 ~~~vDe~~pHI~v~~~~~~~~~~----~~~l~~aCPA~~Y~~~~~----g~l~~~yegClECGTCRvlc~~~~~i~W~YP 88 (99)
T COG2440 17 RYNVDEDHPHIIVKDPDDCQECE----DKPLIKACPAGCYKLIDD----GKLRFDYEGCLECGTCRVLCPHSGLIQWRYP 88 (99)
T ss_pred eeeccCCCCcEecCCchhhhhcc----chhhhhcCCHHHeeECCC----CcEEEeecCeeeccceeEecCCCcceEEecC
Confidence 34444 56999999999998876 689999999999999764 3799999999999999999999 99999999
Q ss_pred CCCCCCCCCC
Q psy14497 551 EGGSGTNYPN 560 (561)
Q Consensus 551 ~g~~g~~~~~ 560 (561)
+||+||.||.
T Consensus 89 rgg~GI~yrf 98 (99)
T COG2440 89 RGGFGITYRY 98 (99)
T ss_pred CCCcCEEEec
Confidence 9999999984
No 59
>PLN02463 lycopene beta cyclase
Probab=99.90 E-value=3.9e-21 Score=198.32 Aligned_cols=299 Identities=17% Similarity=0.167 Sum_probs=170.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...+||+|||||||||++|+.|++. |++|+|+|+.+........|. ....++ .+.....+.. .....
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~------Gl~V~liE~~~~~~~p~~~g~--w~~~l~----~lgl~~~l~~-~w~~~ 92 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEA------GLSVCCIDPSPLSIWPNNYGV--WVDEFE----ALGLLDCLDT-TWPGA 92 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHC------CCeEEEeccCccchhccccch--HHHHHH----HCCcHHHHHh-hCCCc
Confidence 3469999999999999999999999 999999999764321110110 000111 1110000000 00000
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
..+++...... . ......++|.+|.+.|.+++.+.|++++ ..+|+++..++++ +.|.+.
T Consensus 93 ~v~~~~~~~~~-----~-----~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~-------- 151 (447)
T PLN02463 93 VVYIDDGKKKD-----L-----DRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCD-------- 151 (447)
T ss_pred EEEEeCCCCcc-----c-----cCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEEC--------
Confidence 00111100000 0 1224468999999999999988999986 4689998765332 445553
Q ss_pred ceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCC-----
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLD----- 254 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----- 254 (561)
+|.+++||+||+|||.+|.+.+. ..+. ...+-..+....++....++.+.. ..+.|-..
T Consensus 152 -------dG~~i~A~lVI~AdG~~s~l~~~-------~~~~-~~g~Q~a~Gi~~ev~~~p~d~~~~-vlMD~r~~~~~~~ 215 (447)
T PLN02463 152 -------DGVKIQASLVLDATGFSRCLVQY-------DKPF-NPGYQVAYGILAEVDSHPFDLDKM-LFMDWRDSHLGNN 215 (447)
T ss_pred -------CCCEEEcCEEEECcCCCcCccCC-------CCCC-CccceeeeeEEeecCCCCcccccc-hhhhcChhhcccc
Confidence 35689999999999999986421 1111 111111111223322222222211 12222110
Q ss_pred -------CCCCceEEEEEcCCCeEEEEEEecCCCCC-CCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccC
Q psy14497 255 -------YKTYGGGFLYHMENNQISIGYIISLDYKN-PYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSL 326 (561)
Q Consensus 255 -------~~~~g~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (561)
....+..|++|.+++++.++.+.-..... +.....+.+.++..+.. ++..+..+.....+|.++. .
T Consensus 216 ~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~~~~~lk~~L~~~l~~~G----i~~~~i~~~E~~~IPmg~~--~ 289 (447)
T PLN02463 216 PELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDIQERMVARLRHLG----IKVKSVEEDEKCVIPMGGP--L 289 (447)
T ss_pred chhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCCCHHHHHHHHHHHHHHCC----CCcceeeeeeeeEeeCCCC--C
Confidence 11134567779999988887663211111 11111222222221111 1223344444556787664 3
Q ss_pred CeeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCCC
Q psy14497 327 PEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNNK 375 (561)
Q Consensus 327 ~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~~ 375 (561)
|. ..++++++||||+.++|.+|.|+..++..|..+|++|++++..+..
T Consensus 290 ~~-~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~ 337 (447)
T PLN02463 290 PV-IPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRS 337 (447)
T ss_pred CC-CCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 32 3479999999999999999999999999999999999999986554
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.90 E-value=1.5e-22 Score=210.30 Aligned_cols=222 Identities=16% Similarity=0.215 Sum_probs=128.7
Q ss_pred CcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14497 124 GNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 124 ~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
.+|+++|.+|++.|.+.|.+.||+++.++ |+++..+++|.+..|++.+ |.+++||+||+|+|.+
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~---------------g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDD---------------GRTIEADFFIDASGRR 210 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---------------SEEEEESEEEE-SGGG
T ss_pred eeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECC---------------CCEEEEeEEEECCCcc
Confidence 38999999999999999999999999885 8888877788888888853 5689999999999999
Q ss_pred chhhHHHHHHcCCCCCCCCccccceeEEEEeeCCC-ccCCCcEEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCCC
Q psy14497 204 GHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPK-LHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYK 282 (561)
Q Consensus 204 S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~ 282 (561)
|.+.++..+ .+... ....+..........+.. ...+.+..+. ...|+.|.+|..++..+ |++...+..
T Consensus 211 s~L~~~~L~-~~~~~--~~~~L~~d~av~~~~~~~~~~~~~T~~~a-------~~~GW~W~IPL~~~~~~-G~V~s~~~~ 279 (454)
T PF04820_consen 211 SLLARKALK-VGFRD--WSDWLPNDRAVAVQVPNEDPPEPYTRSTA-------FEAGWIWYIPLQNRRGS-GYVYSSDFI 279 (454)
T ss_dssp -CCCCCCT--EEEEE--ETTTCEEEEEEEEEEE-SSCTTSSEEEEE-------ESSEEEEEEEESSEEEE-EEEEETTTS
T ss_pred chhhHhhhc-CCCcc--ccccccccEEEEEecCcCCCCCCceeEEe-------cCCceEEEccCCCcceE-EEEeccccC
Confidence 987655210 01111 001110000001111111 1122222222 24577889999876555 888766543
Q ss_pred CCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHHHH
Q psy14497 283 NPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILV 362 (561)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~l 362 (561)
+..+.++.+..+......... ..+.... +. ..+...+|+++|||||++++|+.+.|+.+|+..+..+
T Consensus 280 ----s~~~A~~~l~~~l~~~~~~~~-~~i~~~~------g~--~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l 346 (454)
T PF04820_consen 280 ----SDDEAEAELLAYLGGSPEAEP-RHIRFRS------GR--RKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEAL 346 (454)
T ss_dssp ----HHHHHHHHHHHHHTCHCTTSC-EEEE-S-------EE--ESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHhcchhhhcch-hhhcccc------cc--hhhcccCCEEEEcchhhccCccccccHHHHHHHHHHH
Confidence 334444444322110001111 2222211 11 3345568999999999999999999999999855555
Q ss_pred HHHHHHHHhcCCCccc-hhhHHHHHhhc
Q psy14497 363 ADSIFKKICSNNKFNK-LITYKTSFQAS 389 (561)
Q Consensus 363 A~~l~~~l~~~~~~~~-l~~y~~~~~~~ 389 (561)
++ .+...+.... ++.|++.++..
T Consensus 347 ~~----~l~~~~~~~~~~~~Yn~~~~~~ 370 (454)
T PF04820_consen 347 AE----ALPDDDFSPAALDRYNRRMRRE 370 (454)
T ss_dssp HH----THHCTTCCHHHHHHHHHHHHHH
T ss_pred HH----hcccCCCCHHHHHHHHHHHHHH
Confidence 54 4444443344 88888877754
No 61
>KOG1298|consensus
Probab=99.83 E-value=8.9e-19 Score=166.64 Aligned_cols=302 Identities=20% Similarity=0.261 Sum_probs=175.6
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc----cCCcccc
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK----LNKLFNT 93 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~----~~~~~~~ 93 (561)
+.+..+||+|||||.+|.++|+.|+|. |.+|.|+||.-..-.++ -|..++|.....+. +++ ....-..
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kd------GRrVhVIERDl~EPdRi-vGEllQPGG~~~L~-~LGl~Dcve~IDAQ 112 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKD------GRRVHVIERDLSEPDRI-VGELLQPGGYLALS-KLGLEDCVEGIDAQ 112 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhC------CcEEEEEecccccchHH-HHHhcCcchhHHHH-HhCHHHHhhcccce
Confidence 556789999999999999999999999 99999999985433333 56667766544331 111 0000011
Q ss_pred ccchhhhhhhcCCCCcccC--CCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEe
Q psy14497 94 PVIEERFLFLSSKKSYKIP--SWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIAT 170 (561)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~ 170 (561)
.+. .+..+.++....++ ...++. +..+...+.++|.+.|++++.. .+|++..|+ |.++.++ ++.+.||+.
T Consensus 113 ~v~--Gy~ifk~gk~v~~pyP~~~f~~---d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee-~gvvkGV~y 185 (509)
T KOG1298|consen 113 RVT--GYAIFKDGKEVDLPYPLKNFPS---DPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEE-EGVVKGVTY 185 (509)
T ss_pred Eee--eeEEEeCCceeeccCCCcCCCC---CcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhc-cCeEEeEEE
Confidence 111 12222233333333 111221 2336678889999999999876 689887764 6666654 678889998
Q ss_pred cccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEec
Q psy14497 171 NNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIG 250 (561)
Q Consensus 171 ~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (561)
.+ ++|+. .+..|.+.|.|||..|.+|+.+.++- ....+..+ +|+. .+ ......+.. .|..
T Consensus 186 k~----k~gee-------~~~~ApLTvVCDGcfSnlRrsL~~~~---v~~V~S~f-VG~v--l~-N~~l~~p~h-ghvI- 245 (509)
T KOG1298|consen 186 KN----KEGEE-------VEAFAPLTVVCDGCFSNLRRSLCDPK---VEEVPSYF-VGLV--LK-NCRLPAPNH-GHVI- 245 (509)
T ss_pred ec----CCCce-------EEEecceEEEecchhHHHHHHhcCCc---ccccchhe-eeee--ec-CCCCCCCCc-ceEE-
Confidence 65 33321 46789999999999999999965211 11112222 3322 11 111111111 1221
Q ss_pred cCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhh------hCh-hHHH----hhcCCeeeeecceeec
Q psy14497 251 WPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYK------THP-KICK----ILKGGKRISYGARTIT 319 (561)
Q Consensus 251 ~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~----~l~~~~~~~~~~~~~~ 319 (561)
+ +..--..+||.+...+.+.+.+......+..+ .++..|. .-| .+++ .++++.... +|
T Consensus 246 --L--~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~--gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irs-----mp 314 (509)
T KOG1298|consen 246 --L--SKPSPILVYQISSTEVRCLVDVPGQKLPSIAN--GEMATYMKESVAPQIPEKLRESFLEAVDEGNIRS-----MP 314 (509)
T ss_pred --e--cCCCcEEEEEecchheEEEEecCcccCCcccc--hhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhc-----Cc
Confidence 1 11112347788777777766654432222222 1121111 111 2232 233333222 22
Q ss_pred cCCCccCC--eeecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHH
Q psy14497 320 TGGLQSLP--EFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFK 368 (561)
Q Consensus 320 ~~~~~~~~--~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~ 368 (561)
. +.+| .....+++++|||...-+|++|.||..|+.|..++-+.|.-
T Consensus 315 n---~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~p 362 (509)
T KOG1298|consen 315 N---SSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKP 362 (509)
T ss_pred c---ccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhcc
Confidence 2 1122 22347999999999999999999999999999988887743
No 62
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=99.82 E-value=2e-21 Score=150.61 Aligned_cols=78 Identities=22% Similarity=0.477 Sum_probs=64.5
Q ss_pred ccCCC-CCCceEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCC-eeEECC
Q psy14497 473 NHDED-QPIHLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQN-IEWITP 550 (561)
Q Consensus 473 ~~~~~-~~~h~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~-i~~~~p 550 (561)
+|..| +.+||.|.+.. .+|. .++|+.+||++||+..++ ..+.+|+++|++||+|+++||..+ |+|+||
T Consensus 15 ~y~vd~~~~HI~i~~~~--~~~~----~k~C~~aCPagA~~~~e~----G~V~vd~e~CigCg~C~~~C~~~~~~~W~yP 84 (95)
T PRK15449 15 KFNVDEEHPHIVVKADA--DKQA----LELLVKACPAGLYKKQDD----GSVRFDYAGCLECGTCRILGLGSALEQWEYP 84 (95)
T ss_pred eeECCCCCCcEEEcCCC--Cchh----hhHHHHHCCHhhcEeCCC----CCEEEcCCCCCcchhhhhhcCCCCccCccCC
Confidence 66655 67999997653 2233 579999999999987532 379999999999999999999876 699999
Q ss_pred CCCCCCCCCC
Q psy14497 551 EGGSGTNYPN 560 (561)
Q Consensus 551 ~g~~g~~~~~ 560 (561)
+||+||.||.
T Consensus 85 rgg~GV~yr~ 94 (95)
T PRK15449 85 RGTFGVEFRY 94 (95)
T ss_pred CCCcCEEEec
Confidence 9999999984
No 63
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.82 E-value=3.2e-18 Score=173.87 Aligned_cols=279 Identities=16% Similarity=0.129 Sum_probs=153.0
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcccc--ccchhhhh
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNT--PVIEERFL 101 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~ 101 (561)
||+|||||+|||++|+.|++. .||++|+|+|+.+..++....+ ... ..+.+.... .+.. ........
T Consensus 1 DviIvGaG~AGl~lA~~L~~~----~~g~~V~lle~~~~~~~~~tw~-~~~-~~~~~~~~~-----~~~~~v~~~W~~~~ 69 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA----RPDFRIRVIEAGRTIGGNHTWS-FFD-SDLSDAQHA-----WLADLVQTDWPGYE 69 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCCCCCCcccce-ecc-cccchhhhh-----hhhhhheEeCCCCE
Confidence 899999999999999999975 4599999999987654421000 000 000000000 0000 00000000
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+..+.....+ +.....|++.+|.+.|.+.+.. + ++.+.+|+++. +++ |.+.
T Consensus 70 v~~~~~~~~l----------~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~--~~~----v~l~---------- 120 (370)
T TIGR01789 70 VRFPKYRRKL----------KTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGLD--ADG----VDLA---------- 120 (370)
T ss_pred EECcchhhhc----------CCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEEe--CCE----EEEC----------
Confidence 1101000001 1235689999999999876643 3 66788998883 232 3332
Q ss_pred ecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcE-EEEeccCCCCCCCce
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLV-IHTIGWPLDYKTYGG 260 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~g~ 260 (561)
+|.+++||+||+|+|.+|.-... .+ .+.+ .|+. ++...+ ++++.. ...+.|+. ..+.
T Consensus 121 -----dg~~~~A~~VI~A~G~~s~~~~~----~~------~Q~f-~G~~--~r~~~p-~~~~~~~lMD~~~~q---~~g~ 178 (370)
T TIGR01789 121 -----PGTRINARSVIDCRGFKPSAHLK----GG------FQVF-LGRE--MRLQEP-HGLENPIIMDATVDQ---LAGY 178 (370)
T ss_pred -----CCCEEEeeEEEECCCCCCCcccc----ce------eeEE-EEEE--EEEcCC-CCCCccEEEeeeccC---CCCc
Confidence 35689999999999988752111 01 1222 3443 444433 444443 33333422 2345
Q ss_pred EEEE--EcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCcc-CCeee-cCCEEE
Q psy14497 261 GFLY--HMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQS-LPEFI-FDGGAF 336 (561)
Q Consensus 261 ~~~~--~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~l 336 (561)
.|+| |.+++.+.|..+.-.+. +..+....-+.+..+. ...-+...+.+......+|...-.. ...|. .+++++
T Consensus 179 ~F~Y~lP~~~~~~lvE~T~~s~~--~~l~~~~l~~~l~~~~-~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~ 255 (370)
T TIGR01789 179 RFVYVLPLGSHDLLIEDTYYADD--PLLDRNALSQRIDQYA-RANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAI 255 (370)
T ss_pred eEEEECcCCCCeEEEEEEeccCC--CCCCHHHHHHHHHHHH-HHhCCCceEEEEeeeeEEeeecCCCcccccccCCceee
Confidence 5666 88999999986643331 2222222222222111 0011222344433334566422100 11122 456999
Q ss_pred EecCCccCCCcccccchHHHHHHHHHHHHHH
Q psy14497 337 IGCNAGFMNVSRIKGIHTSIKSGILVADSIF 367 (561)
Q Consensus 337 vGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~ 367 (561)
+|||||.++|.+|+|++.|++++..+|+.+.
T Consensus 256 iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~ 286 (370)
T TIGR01789 256 AGLRAGLTHPTTGYSLPVAVENADALAAQPD 286 (370)
T ss_pred eecccccccccccccHHHHHHHHHHHHhccC
Confidence 9999999999999999999999998888763
No 64
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.80 E-value=8e-18 Score=171.75 Aligned_cols=281 Identities=14% Similarity=0.112 Sum_probs=158.2
Q ss_pred cEEEECchhHHHHHHHHH--HhccccCCCCCcEEEEcCCCCCCCce-eecceeCh--hhHHhhc-cccccCCccccccch
Q psy14497 24 DVIIVGGGPSGLSAAIRL--KQLAIKKNKEIKICVLEKGSELGAHI-LSGAIIDP--RSIFELF-PKEKLNKLFNTPVIE 97 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~L--a~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~~--~~l~~l~-~~~~~~~~~~~~~~~ 97 (561)
||+|||||||||++|+.| ++. |.+|+|+|+.+..+... ........ ..++.+. ..|.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~------g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~----------- 63 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP------GLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWS----------- 63 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC------CCEEEEEcCCccccccCCcccccccccccchHHHHheecC-----------
Confidence 899999999999999999 555 99999999987652110 01111000 0011110 0110
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccccccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINK 177 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~ 177 (561)
...+....+..... ......|++.+|.+.|.+.+.+.| .++.+.+|+++..+++ .+.|.+.
T Consensus 64 -~~~v~~~~~~~~~~---------~~~Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~------ 124 (374)
T PF05834_consen 64 -GWRVYFPDGSRILI---------DYPYCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLA------ 124 (374)
T ss_pred -ceEEEeCCCceEEc---------ccceEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEEC------
Confidence 00111111111111 123458999999999999998444 5678899999987533 3345553
Q ss_pred CCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCccCCCcEEEEeccCCCCC-
Q psy14497 178 EGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLHKKGLVIHTIGWPLDYK- 256 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~- 256 (561)
+|.+++|++||+|+|..+..... .+ .+.+ .|+. ++...+.+++... ..+.|-.+..
T Consensus 125 ---------~g~~i~a~~VvDa~g~~~~~~~~----~~------~Q~f-~G~~--v~~~~~~f~~~~~-~lMD~r~~~~~ 181 (374)
T PF05834_consen 125 ---------DGRTIRARVVVDARGPSSPKARP----LG------LQHF-YGWE--VETDEPVFDPDTA-TLMDFRVPQSA 181 (374)
T ss_pred ---------CCCEEEeeEEEECCCcccccccc----cc------ccee-EEEE--EeccCCCCCCCce-EEEEecccCCC
Confidence 35689999999999966652111 11 1222 4433 3444443444444 4455544322
Q ss_pred -CCceEEEEEcCCCeEEEEEEecCCCC-CCCCChHHHHHHhhhChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCE
Q psy14497 257 -TYGGGFLYHMENNQISIGYIISLDYK-NPYLSPFEEFQRYKTHPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGG 334 (561)
Q Consensus 257 -~~g~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 334 (561)
.....|++|.+++++.|+.+.-.... -+.....+.+..+..+ .-+...+.++.....+|... ...++...+++
T Consensus 182 ~~~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~l~~----~g~~~~~i~~~E~G~IPm~~-~~~~~~~~~~v 256 (374)
T PF05834_consen 182 DGPSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLRRYLER----LGIDDYEILEEERGVIPMTT-GGFPPRFGQRV 256 (374)
T ss_pred CCceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHH----cCCCceeEEEeecceeeccc-CCCccccCCCe
Confidence 23334455999999999877543321 1111112222222211 11223344444445566621 11234445779
Q ss_pred EEEecCCccCCCcccccchHHHHHHHHHHHHHHH
Q psy14497 335 AFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFK 368 (561)
Q Consensus 335 ~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~ 368 (561)
+.+|+|+|.++|.+|-++..+.+.+..+|+.+.+
T Consensus 257 ~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 257 IRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred eeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999997766666666666655544
No 65
>KOG3855|consensus
Probab=99.77 E-value=5.3e-17 Score=156.40 Aligned_cols=334 Identities=19% Similarity=0.197 Sum_probs=173.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC--CCCCCceeec------ceeChhhH--HhhccccccCC
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG--SELGAHILSG------AIIDPRSI--FELFPKEKLNK 89 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~--~~~g~~~~~G------~~~~~~~l--~~l~~~~~~~~ 89 (561)
+..|||+||||||+|+++|-.|... +.--..+|.|+|.. +..+.--.++ ..+++..+ -+.++.|....
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~sn--p~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~ 111 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSN--PPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIF 111 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccC--CccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhh
Confidence 3479999999999999999999844 11225799999988 3333211111 11222222 22234443100
Q ss_pred ccccccchhhhhhhcC--CCCcccCCCCCCceeecCCcEEeeHHHHHHHHHH-HHH--HCCCEEEcCceEeEEEE-----
Q psy14497 90 LFNTPVIEERFLFLSS--KKSYKIPSWILPICFKNHGNYIISLSDLVRWMGK-KAE--NMGIDIFSGFSASEILY----- 159 (561)
Q Consensus 90 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~-~a~--~~Gv~i~~g~~v~~i~~----- 159 (561)
.. +.....++...++ ...+.+..-.+.. .-++.+.-..+...|+. ++. ..+|++....++.++..
T Consensus 112 ~~-R~~~~~~~~v~Ds~s~a~I~~~~d~~~~----d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~ 186 (481)
T KOG3855|consen 112 HD-RYQKFSRMLVWDSCSAALILFDHDNVGI----DMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLI 186 (481)
T ss_pred hh-ccccccceeeecccchhhhhhccccccc----cceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccC
Confidence 00 0000011111111 1111111000000 11466666666666663 332 25799999998877654
Q ss_pred -cCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCC-CccccceeEEEEeeCC
Q psy14497 160 -DSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKD-PQTYSLGIKELWTINP 237 (561)
Q Consensus 160 -~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~~~~ 237 (561)
++++-...+.+ ++|..+..|++|+|||.+|.+|+. .+++.... ... .++-....+..
T Consensus 187 ~~~n~~~~~i~l---------------~dg~~~~~~LLigAdg~Ns~vR~~----snid~~~~ny~~--havVAtl~l~~ 245 (481)
T KOG3855|consen 187 KNDNGMWFHITL---------------TDGINFATDLLIGADGFNSVVRKA----SNIDVASWNYDQ--HAVVATLKLEE 245 (481)
T ss_pred CCCCcceEEEEe---------------ccCceeeeceeeccccccchhhhh----cCCCcccccccc--eeeeEEEEecc
Confidence 22333333443 457789999999999999999887 55554221 111 12222233333
Q ss_pred CccCCCcEEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCC-----CCCCCChHHHHH-Hhh-hChh----------
Q psy14497 238 KLHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDY-----KNPYLSPFEEFQ-RYK-THPK---------- 300 (561)
Q Consensus 238 ~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~~~~~~-~~~-~~~~---------- 300 (561)
+....+..+|.| + +.|..-+.|..++.-++.+...... .-|.....+.+. .|. .++.
T Consensus 246 ~~~~~~~AwQRF---l---P~GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~a 319 (481)
T KOG3855|consen 246 EAILNGVAWQRF---L---PTGPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFA 319 (481)
T ss_pred cccccchhHHhc---C---CCCceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhh
Confidence 333444455543 2 2333335577666666655543210 000000111110 000 0000
Q ss_pred ---H----HHhhcCCe---eeeecce----------eeccCCCccCCeeecCCEEEEecCCccCCCcccccchHHHHHHH
Q psy14497 301 ---I----CKILKGGK---RISYGAR----------TITTGGLQSLPEFIFDGGAFIGCNAGFMNVSRIKGIHTSIKSGI 360 (561)
Q Consensus 301 ---~----~~~l~~~~---~~~~~~~----------~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~ 360 (561)
. ..++...+ ...+.++ .+| .|+.-...+..+|+.++|||||.++|+.|||+|+++.|..
T Consensus 320 l~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FP-Lgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~ 398 (481)
T KOG3855|consen 320 LNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFP-LGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVK 398 (481)
T ss_pred hcchhhccHHHHhccCcccccccCCeEEEecccceeecc-cccccHHHhcCCchhhhcchhhccccCcccccCCChhhHH
Confidence 0 11111110 1111111 122 2233334667799999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCc--cc-hhhHHHHHhh
Q psy14497 361 LVADSIFKKICSNNKF--NK-LITYKTSFQA 388 (561)
Q Consensus 361 ~lA~~l~~~l~~~~~~--~~-l~~y~~~~~~ 388 (561)
.|...+.++...+..- .. |+.|+..+..
T Consensus 399 ~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~ 429 (481)
T KOG3855|consen 399 ILVDSLSEAIVSGLDLGSVEHLEPYERERLQ 429 (481)
T ss_pred HHHHHHHHHHHhcccccchhhhhHHHHHHhh
Confidence 9999999887665432 22 7888866643
No 66
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.73 E-value=1.1e-16 Score=153.46 Aligned_cols=164 Identities=25% Similarity=0.348 Sum_probs=114.3
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccch
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIE 97 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~ 97 (561)
++.+++||+|||||||||++|+.|++. |++|+|+||...+|+.+..|+.+.+... +..
T Consensus 21 ~~~~~~DVvIVGgGpAGl~AA~~la~~------G~~V~liEk~~~~Ggg~~~gg~~~~~~~----------------v~~ 78 (257)
T PRK04176 21 LDYLEVDVAIVGAGPSGLTAAYYLAKA------GLKVAVFERKLSFGGGMWGGGMLFNKIV----------------VQE 78 (257)
T ss_pred HHhccCCEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCCCccccCcccccccc----------------chH
Confidence 456789999999999999999999999 9999999999988765544432211100 001
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccccccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINK 177 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~ 177 (561)
....+++.. .++ ......+.+.+++..+...|.+.+.+.|++++++++|+++..++++++.+|.+.+.....
T Consensus 79 ~~~~~l~~~---gv~-----~~~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~ 150 (257)
T PRK04176 79 EADEILDEF---GIR-----YKEVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEM 150 (257)
T ss_pred HHHHHHHHC---CCC-----ceeecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccc
Confidence 111222210 011 001123356788999999999999999999999999999987655578888775432222
Q ss_pred CCceecccccCeEEecCEEEEccCCCchhhHHHHHHcC
Q psy14497 178 EGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFN 215 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g 215 (561)
+|.. .+..+++|++||+|+|.+|.+.+.+.++..
T Consensus 151 ~g~~----~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 151 AGLH----VDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred cCCC----CCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 2210 123589999999999999999998876543
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.71 E-value=2.9e-16 Score=150.04 Aligned_cols=166 Identities=26% Similarity=0.366 Sum_probs=114.0
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccch
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIE 97 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~ 97 (561)
++..++||+|||||||||++|+.|++. |++|+|+||...+|+....|+.+.+.. . ...
T Consensus 17 ~~~~~~DVvIVGgGpAGL~aA~~la~~------G~~V~vlEk~~~~Ggg~~~gg~~~~~~--------~--------~~~ 74 (254)
T TIGR00292 17 LDYAESDVIIVGAGPSGLTAAYYLAKN------GLKVCVLERSLAFGGGSWGGGMLFSKI--------V--------VEK 74 (254)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCccccCCCcceecc--------c--------ccc
Confidence 345689999999999999999999999 999999999998876554333211110 0 000
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCC-CEEEEEecccccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKN-NVCGIATNNFGIN 176 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g-~v~~V~~~~~~~~ 176 (561)
....+++.. .+ +......+.+..++..+.+.|.+.+.+.|+++++++.|.++..++++ ++.+|.+......
T Consensus 75 ~~~~~l~~~---gi-----~~~~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~ 146 (254)
T TIGR00292 75 PAHEILDEF---GI-----RYEDEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIE 146 (254)
T ss_pred hHHHHHHHC---CC-----CeeeccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCcccc
Confidence 111122110 11 11111223456688999999999999999999999999999876443 6888888543322
Q ss_pred cCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCC
Q psy14497 177 KEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLD 217 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~ 217 (561)
.+|.. .+..+++|++||+|+|..|.+.+.+.+++++.
T Consensus 147 ~~g~~----~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~ 183 (254)
T TIGR00292 147 LAGLH----VDPLTQRSRVVVDATGHDAEIVAVCAKKIVLE 183 (254)
T ss_pred ccCCC----CCCEEEEcCEEEEeecCCchHHHHHHHHcCcc
Confidence 22210 12358999999999999999988887766543
No 68
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.69 E-value=1.5e-16 Score=142.28 Aligned_cols=162 Identities=26% Similarity=0.392 Sum_probs=106.0
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchh
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEE 98 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 98 (561)
+..++||+|||||||||++|+.|++. |++|+|||+...+|+....|+.+-++. . +...
T Consensus 14 ~~~~~DV~IVGaGpaGl~aA~~La~~------g~kV~v~E~~~~~GGg~~~Gg~lf~~i--------V--------Vq~~ 71 (230)
T PF01946_consen 14 DYLEYDVAIVGAGPAGLTAAYYLAKA------GLKVAVIERKLSPGGGMWGGGMLFNKI--------V--------VQEE 71 (230)
T ss_dssp HHTEESEEEE--SHHHHHHHHHHHHH------TS-EEEEESSSS-BTTTTS-CTT---E--------E--------EETT
T ss_pred hhccCCEEEECCChhHHHHHHHHHHC------CCeEEEEecCCCCCccccccccccchh--------h--------hhhh
Confidence 35679999999999999999999999 999999999999987665554322110 0 0000
Q ss_pred hhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccC
Q psy14497 99 RFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKE 178 (561)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~ 178 (561)
.-.++++ +.++....+.+.|..+...+...|..++.+.|++|+..+.|+++...+++++.||.++.......
T Consensus 72 a~~iL~e--------lgi~y~~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~ 143 (230)
T PF01946_consen 72 ADEILDE--------LGIPYEEYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMA 143 (230)
T ss_dssp THHHHHH--------HT---EE-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT
T ss_pred HHHHHHh--------CCceeEEeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHh
Confidence 1111111 01111112244677899999999999999999999999999999876568899998876555444
Q ss_pred CceecccccCeEEecCEEEEccCCCchhhHHHHHHc
Q psy14497 179 GIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKF 214 (561)
Q Consensus 179 g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~ 214 (561)
|.. -|..++++++||+|+|.-+.+.+.+.++.
T Consensus 144 glH----vDPl~i~ak~ViDaTGHda~v~~~~~kk~ 175 (230)
T PF01946_consen 144 GLH----VDPLTIRAKVVIDATGHDAEVVRVLAKKL 175 (230)
T ss_dssp --T-----B-EEEEESEEEE---SSSSSTSHHHHHH
T ss_pred hcC----CCcceEEEeEEEeCCCCchHHHHHHHHHh
Confidence 422 24468999999999999988777666554
No 69
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.69 E-value=7.3e-16 Score=169.57 Aligned_cols=41 Identities=29% Similarity=0.489 Sum_probs=37.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
....+|+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~------G~~VtV~Ek~~~~GG~ 577 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA------GHPVTVFEREENAGGV 577 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc------CCeEEEEecccccCcc
Confidence 3567999999999999999999999 9999999999888664
No 70
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.69 E-value=7.1e-17 Score=173.65 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=48.3
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++.+.|..|..+.-|+.|+.+||.+++....+ + ..+.+|+++|+.||.|..+||++||++.
T Consensus 501 ~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~--~-~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 561 (564)
T PRK12771 501 QEAARCLSCGNCFECDNCYGACPQDAIIKLGP--G-RRYHFDYDKCTGCHICADVCPCGAIEMG 561 (564)
T ss_pred hhcccCcccccccccchhhhhCChhheeeecC--C-ceEEEecccCcChhHHHhhcCcCceEec
Confidence 45677777633334688999999999876542 2 2478999999999999999999999983
No 71
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.68 E-value=7.5e-16 Score=136.45 Aligned_cols=156 Identities=24% Similarity=0.414 Sum_probs=116.1
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChh-hH----HhhccccccCCcccc
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPR-SI----FELFPKEKLNKLFNT 93 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~-~l----~~l~~~~~~~~~~~~ 93 (561)
+..+.||+||||||+||+||+.|++. |++|+||||+-.+|+.+..|+.+-+. .+ +++|.++.
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~------g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~g------- 93 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKA------GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFG------- 93 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhC------CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhC-------
Confidence 45679999999999999999999999 99999999999998877666544322 11 12222111
Q ss_pred ccchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccc
Q psy14497 94 PVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNF 173 (561)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~ 173 (561)
++......+.|+.+...+...|...+.+.|++|+.++.|+++...++.++.||.++..
T Consensus 94 ----------------------I~ye~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt 151 (262)
T COG1635 94 ----------------------IRYEEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWT 151 (262)
T ss_pred ----------------------CcceecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecc
Confidence 1211223446778889999999999999999999999999998765548999988765
Q ss_pred ccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHH
Q psy14497 174 GINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKK 213 (561)
Q Consensus 174 ~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~ 213 (561)
.....|-. -|..++++++||+|+|.-..+...+.++
T Consensus 152 ~V~~~~lh----vDPl~i~a~~VvDaTGHda~v~~~~~kr 187 (262)
T COG1635 152 PVQMAGLH----VDPLTIRAKAVVDATGHDAEVVSFLAKR 187 (262)
T ss_pred hhhhcccc----cCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence 54333321 2345899999999999888877665543
No 72
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.65 E-value=2.3e-15 Score=166.62 Aligned_cols=40 Identities=33% Similarity=0.482 Sum_probs=36.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~------G~~VTV~Ek~~~lGG~ 575 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA------GHPVTVFEKKEKPGGV 575 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC------CCeEEEEecccccCce
Confidence 458999999999999999999999 9999999999888764
No 73
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.60 E-value=1.6e-14 Score=140.48 Aligned_cols=168 Identities=23% Similarity=0.314 Sum_probs=115.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ec-ce---eChhhHHhhccccc-----cCC
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SG-AI---IDPRSIFELFPKEK-----LNK 89 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G-~~---~~~~~l~~l~~~~~-----~~~ 89 (561)
++.+||+|||||||||+||+.++++ |.+|+|||+.+.+|.++. +| +. .+....++++.... ...
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~------G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~s 74 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKA------GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKS 74 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhc------CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHH
Confidence 3679999999999999999999999 999999999999988864 33 22 22233444444333 223
Q ss_pred ccccccchhhhhhhcCCCCcc---cCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEE
Q psy14497 90 LFNTPVIEERFLFLSSKKSYK---IPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVC 166 (561)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~ 166 (561)
.+.+..+.+-+.|+...+--. -....+|. ...-..+.+.|..++++.||+++.+++|.++..++ ...
T Consensus 75 al~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~--------sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f 144 (408)
T COG2081 75 ALARFTPEDFIDWVEGLGIALKEEDLGRMFPD--------SDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGF 144 (408)
T ss_pred HHHhCCHHHHHHHHHhcCCeeEEccCceecCC--------ccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceE
Confidence 344455566666665422111 11222332 13456899999999999999999999999998763 334
Q ss_pred EEEecccccccCCceecccccCeEEecCEEEEccCCCchh-------hHHHHHHcCCCC
Q psy14497 167 GIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL-------SKQIIKKFNLDN 218 (561)
Q Consensus 167 ~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~-------~~~l~~~~g~~~ 218 (561)
.|.+. +|.+++||.+|+|+|..|.= .-++.+.+|++.
T Consensus 145 ~l~t~---------------~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 145 RLDTS---------------SGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred EEEcC---------------CCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 55553 35589999999999988762 233444566655
No 74
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.47 E-value=8.7e-12 Score=127.11 Aligned_cols=75 Identities=25% Similarity=0.422 Sum_probs=57.7
Q ss_pred CCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14497 123 HGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 123 ~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
.....++...+.+.|.+.+++.|++++.+++|+++..+ ++.+.+|++.+ | .++||.||.|+|.
T Consensus 139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~---------------g-~i~ad~vV~a~G~ 201 (358)
T PF01266_consen 139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD---------------G-EIRADRVVLAAGA 201 (358)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETT---------------E-EEEECEEEE--GG
T ss_pred cccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccc---------------c-ccccceeEecccc
Confidence 44677899999999999999999999999999999876 56677788854 4 4999999999998
Q ss_pred CchhhHHHHHHcCCC
Q psy14497 203 RGHLSKQIIKKFNLD 217 (561)
Q Consensus 203 ~S~~~~~l~~~~g~~ 217 (561)
++. .+....+.+
T Consensus 202 ~s~---~l~~~~~~~ 213 (358)
T PF01266_consen 202 WSP---QLLPLLGLD 213 (358)
T ss_dssp GHH---HHHHTTTTS
T ss_pred cce---eeeeccccc
Confidence 765 344445543
No 75
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.46 E-value=9.9e-12 Score=129.61 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=55.3
Q ss_pred EEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 126 YIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++...+.+.|.+.+.+.|++|+.+++|+++..+ ++.+++|.+. +.++++|.||.|+|.++.
T Consensus 196 g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~----------------~~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 196 ETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTG----------------GGVITADAYVVALGSYST 258 (416)
T ss_pred ccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeC----------------CcEEeCCEEEECCCcchH
Confidence 34677799999999999999999999999999765 4455566653 237899999999998874
Q ss_pred hhHHHHHHcCCCC
Q psy14497 206 LSKQIIKKFNLDN 218 (561)
Q Consensus 206 ~~~~l~~~~g~~~ 218 (561)
.+.+.++++.
T Consensus 259 ---~l~~~~g~~~ 268 (416)
T PRK00711 259 ---ALLKPLGVDI 268 (416)
T ss_pred ---HHHHHhCCCc
Confidence 3444455443
No 76
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.44 E-value=7.9e-11 Score=122.37 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=49.9
Q ss_pred EEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 126 YIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++...+...|.+.+.+.|++++.+++|+++...+++.+++|++.+ | +++++.||+|.|.++.
T Consensus 178 g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------------g-~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 178 GTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------------G-FIGAKKVGVAVAGHSS 241 (407)
T ss_pred CcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------------c-eEECCEEEECCChhhH
Confidence 34667788888999999999999999999999765456667777743 3 6899988777776654
No 77
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.42 E-value=1.9e-11 Score=120.58 Aligned_cols=41 Identities=29% Similarity=0.702 Sum_probs=38.6
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
.+.-+|+|||||+||+++|+.|++. |++|.++||.+.+|++
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~------G~~v~LVEKepsiGGr 162 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADM------GFKVYLVEKEPSIGGR 162 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHc------CCeEEEEecCCccccc
Confidence 4678999999999999999999999 9999999999999885
No 78
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.41 E-value=3.3e-13 Score=137.53 Aligned_cols=153 Identities=25% Similarity=0.360 Sum_probs=83.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ec-ceeCh----hhHHhhccccc-----cCCcc
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SG-AIIDP----RSIFELFPKEK-----LNKLF 91 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G-~~~~~----~~l~~l~~~~~-----~~~~~ 91 (561)
|||+|||||||||+||+.|++. |.+|+|+||.+.+|.++. +| +..+- ....++..... ....+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~------g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK------GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT------T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHH
Confidence 7999999999999999999999 999999999999986643 22 11110 11111111111 00112
Q ss_pred ccccchhhhhhhcCCCCcc-c--CCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEE
Q psy14497 92 NTPVIEERFLFLSSKKSYK-I--PSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGI 168 (561)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~--~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V 168 (561)
......+-+.|+.+.+-.. . ....+|. .-...++.+.|.+.+++.||+++++++|.++..+ ++.+..|
T Consensus 75 ~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~--------s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v 145 (409)
T PF03486_consen 75 KRFSPEDLIAFFEELGVPTKIEEDGRVFPK--------SDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGV 145 (409)
T ss_dssp HHS-HHHHHHHHHHTT--EEE-STTEEEET--------T--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEE
T ss_pred hcCCHHHHHHHHHhcCCeEEEcCCCEECCC--------CCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEe
Confidence 2223334444554322111 0 0111111 1135788999999999999999999999999875 4555677
Q ss_pred EecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 169 ATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 169 ~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++. ++.++.+|.||+|+|..|.
T Consensus 146 ~~~---------------~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 146 KTK---------------NGGEYEADAVILATGGKSY 167 (409)
T ss_dssp EET---------------TTEEEEESEEEE----SSS
T ss_pred ecc---------------CcccccCCEEEEecCCCCc
Confidence 772 2468999999999998775
No 79
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.37 E-value=2.4e-10 Score=118.91 Aligned_cols=67 Identities=9% Similarity=0.071 Sum_probs=48.3
Q ss_pred EeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 127 IISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 127 ~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.++...+...|.+.+.+.|++++++++|+++..+ ++. +.+.+.+.+ +. .+.++++|.||.|+|.++.
T Consensus 193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~-~~v~~~~~~----~~------~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGG-VVLTVQPSA----EH------PSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCE-EEEEEEcCC----CC------ccceEecCEEEECCCcChH
Confidence 3566688899999999999999999999999764 333 334432210 00 0136899999999999875
No 80
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.37 E-value=3.1e-11 Score=132.66 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=49.8
Q ss_pred cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14497 125 NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 125 ~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S 204 (561)
...++...+.+.|.+.+.+ |++++++++|+++..+ ++. +.|.+. +|..+++|.||.|+|..+
T Consensus 402 ~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~-~~v~t~---------------~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 402 GGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDG-WQLDFA---------------GGTLASAPVVVLANGHDA 463 (662)
T ss_pred CCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCE-EEEEEC---------------CCcEEECCEEEECCCCCc
Confidence 3457888999999999988 9999999999999765 333 336553 244678999999999887
Q ss_pred h
Q psy14497 205 H 205 (561)
Q Consensus 205 ~ 205 (561)
.
T Consensus 464 ~ 464 (662)
T PRK01747 464 A 464 (662)
T ss_pred c
Confidence 5
No 81
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.36 E-value=4.7e-12 Score=138.06 Aligned_cols=41 Identities=27% Similarity=0.493 Sum_probs=37.3
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
...+|+|||||||||++|+.|++. |++|+|||+.+.+|+.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l 232 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMM 232 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCcee
Confidence 457999999999999999999999 99999999998887643
No 82
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.35 E-value=6.4e-11 Score=124.68 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=51.5
Q ss_pred CCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14497 123 HGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 123 ~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
.....++..++.+.|.+.+.+.|++|+.+++|+++.. +..+.|++.+ | +++||.||.|+|.
T Consensus 175 ~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~~~v~t~~---------------g-~v~A~~VV~Atga 235 (460)
T TIGR03329 175 PVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQPAVVRTPD---------------G-QVTADKVVLALNA 235 (460)
T ss_pred CCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCceEEEeCC---------------c-EEECCEEEEcccc
Confidence 3456789999999999999999999999999999864 2234566532 3 6999999999998
Q ss_pred Cch
Q psy14497 203 RGH 205 (561)
Q Consensus 203 ~S~ 205 (561)
++.
T Consensus 236 ~s~ 238 (460)
T TIGR03329 236 WMA 238 (460)
T ss_pred ccc
Confidence 865
No 83
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.34 E-value=3.3e-10 Score=116.70 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=51.0
Q ss_pred CCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14497 123 HGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 123 ~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
.....++...+.+.|.+.+.+.|++++.+++|+++..+ ++. +.|.+.+ .++++|.||+|+|.
T Consensus 137 ~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~-~~v~~~~----------------~~i~a~~vV~aaG~ 198 (380)
T TIGR01377 137 PNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELL-VTVKTTK----------------GSYQANKLVVTAGA 198 (380)
T ss_pred CCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCe-EEEEeCC----------------CEEEeCEEEEecCc
Confidence 33566788999999999999999999999999999764 333 3465532 27899999999997
Q ss_pred Cch
Q psy14497 203 RGH 205 (561)
Q Consensus 203 ~S~ 205 (561)
++.
T Consensus 199 ~~~ 201 (380)
T TIGR01377 199 WTS 201 (380)
T ss_pred chH
Confidence 644
No 84
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.34 E-value=1.6e-10 Score=118.90 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=48.7
Q ss_pred EeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 127 IISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 127 ~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.++...+...+.+.+.+.|++++.+++|+++..+ ++ .+.|.+.+ | ++++|.||.|+|..+.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~-~~~v~~~~---------------g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GD-GVTVTTAD---------------G-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CC-eEEEEeCC---------------C-EEEeeEEEEecCcchh
Confidence 4778888888988888899999999999999864 33 34566532 3 7899999999998755
No 85
>PLN02661 Putative thiazole synthesis
Probab=99.34 E-value=2.1e-11 Score=119.66 Aligned_cols=157 Identities=20% Similarity=0.281 Sum_probs=94.9
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecce-eChhhHHhhccccccCCccccccch
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAI-IDPRSIFELFPKEKLNKLFNTPVIE 97 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~-~~~~~l~~l~~~~~~~~~~~~~~~~ 97 (561)
+..++||+|||||+|||++|+.|++. +|++|+|+||...+|+....|+. ++...++.
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~----------------- 146 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRK----------------- 146 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecCcccccceeeCccccccccccc-----------------
Confidence 45679999999999999999999964 28999999999888764333322 21110000
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEe--eHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYII--SLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i--~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
....++... ++.+. . .++|.+ +-..+.+.|.+++.+ .|++++.++.++++..+ ++++.||.+....
T Consensus 147 ~a~e~LeEl-GV~fd-----~----~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~ 215 (357)
T PLN02661 147 PAHLFLDEL-GVPYD-----E----QENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWAL 215 (357)
T ss_pred HHHHHHHHc-CCCcc-----c----CCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecch
Confidence 001111110 01110 0 012222 335666778877655 79999999999999875 6788888864322
Q ss_pred cccCCceecccccCeEEecCEEEEccCCCchhhHH
Q psy14497 175 INKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQ 209 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~ 209 (561)
...++... +-.+...++|+.||+|+|..+.+...
T Consensus 216 v~~~~~~~-s~~dp~~I~AkaVVlATGh~g~~ga~ 249 (357)
T PLN02661 216 VAQNHDTQ-SCMDPNVMEAKVVVSSCGHDGPFGAT 249 (357)
T ss_pred hhhccCCC-CccceeEEECCEEEEcCCCCCcchhh
Confidence 11111100 00012468999999999977664443
No 86
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.32 E-value=5.6e-11 Score=119.98 Aligned_cols=176 Identities=20% Similarity=0.292 Sum_probs=107.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce--------eecceeChhhH------------H
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI--------LSGAIIDPRSI------------F 79 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~--------~~G~~~~~~~l------------~ 79 (561)
++++||+|||||+.|+++|+.|+++ .|+++|+|+||...++.+. ++|....|..+ .
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~----~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~ 76 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEY----EPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEF 76 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHh----CCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHH
Confidence 3679999999999999999999999 5559999999998876542 23322222211 1
Q ss_pred hhccccc----cCCccccccchhhhhhhcC------CCCcc------------cCCCCC---CceeecCCcEEeeHHHHH
Q psy14497 80 ELFPKEK----LNKLFNTPVIEERFLFLSS------KKSYK------------IPSWIL---PICFKNHGNYIISLSDLV 134 (561)
Q Consensus 80 ~l~~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~------------~~~~~~---p~~~~~~~~~~i~r~~l~ 134 (561)
++..++. .-..+......+.+.++.. ...+. ...... -....-+.+..++...+.
T Consensus 77 ~~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t 156 (429)
T COG0579 77 AICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELT 156 (429)
T ss_pred HHHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHH
Confidence 1111111 0011111122222222211 00000 000000 000112336678999999
Q ss_pred HHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeE-EecCEEEEccCCCchhhHHHHHH
Q psy14497 135 RWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGME-LYAKYTLFAEGSRGHLSKQIIKK 213 (561)
Q Consensus 135 ~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~-i~ad~vV~AdG~~S~~~~~l~~~ 213 (561)
..|.+.+.+.|++++++++|++++..++| +..+.+. +|.+ ++|++||.|.|..|. .+.+.
T Consensus 157 ~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~---------------~g~~~~~ak~Vin~AGl~Ad---~la~~ 217 (429)
T COG0579 157 RALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTS---------------NGEETLEAKFVINAAGLYAD---PLAQM 217 (429)
T ss_pred HHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEec---------------CCcEEEEeeEEEECCchhHH---HHHHH
Confidence 99999999999999999999999987665 3334442 2334 999999999998876 34444
Q ss_pred cCCCC
Q psy14497 214 FNLDN 218 (561)
Q Consensus 214 ~g~~~ 218 (561)
.|++.
T Consensus 218 ~g~~~ 222 (429)
T COG0579 218 AGIPE 222 (429)
T ss_pred hCCCc
Confidence 66665
No 87
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.28 E-value=2.8e-10 Score=117.57 Aligned_cols=163 Identities=21% Similarity=0.220 Sum_probs=95.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc--eeeccee------ChhhH-H-------hhccc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH--ILSGAII------DPRSI-F-------ELFPK 84 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~--~~~G~~~------~~~~l-~-------~l~~~ 84 (561)
|.+||+|||||++|+++|+.|+++ .||++|+|+||...++.. ..+++.+ .+..+ . +++.+
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~----~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQER----YPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKA 76 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHh----CCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999998 679999999998654331 1122222 11111 0 11122
Q ss_pred cc--cCCcccc------ccchhhhhhh-------cCCCC-cc-cC----CCCCC-----ceeecCCcEEeeHHHHHHHHH
Q psy14497 85 EK--LNKLFNT------PVIEERFLFL-------SSKKS-YK-IP----SWILP-----ICFKNHGNYIISLSDLVRWMG 138 (561)
Q Consensus 85 ~~--~~~~~~~------~~~~~~~~~~-------~~~~~-~~-~~----~~~~p-----~~~~~~~~~~i~r~~l~~~L~ 138 (561)
+. .+..+.. ......+..+ ...+. .. +. ....| ..........++...+.+.|.
T Consensus 77 ~~~~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~ 156 (393)
T PRK11728 77 FCDQHGIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMA 156 (393)
T ss_pred HHHHcCCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHH
Confidence 11 1111110 0011111111 00000 00 00 00011 111223355778999999999
Q ss_pred HHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 139 KKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 139 ~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+.+++.|++++++++|+++..+ ++. +.|.+.+ | ++++|.||.|+|.+|.
T Consensus 157 ~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~---------------g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 157 ELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQ---------------G-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECC---------------C-EEEeCEEEECCCcchH
Confidence 9999999999999999998764 332 3565532 3 7999999999999875
No 88
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.27 E-value=3.3e-09 Score=113.61 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=54.7
Q ss_pred EEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 126 YIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++...|...+...+.+.|++++++++|+++..+ ++++++|++.+. .+|+ +.+++||.||.|+|.++.
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~---~~g~-------~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDH---LTGE-------TQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEc---CCCc-------EEEEECCEEEECCChhHH
Confidence 46888999999999999999999999999999875 567778876431 1111 247999999999998765
No 89
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.26 E-value=1.1e-09 Score=113.16 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=51.6
Q ss_pred CCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccC
Q psy14497 123 HGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEG 201 (561)
Q Consensus 123 ~~~~~i~r~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG 201 (561)
.....++...+.+.|.+.+.+.| ..+..++.+..+..+ . ..+.|.+.+ | +++||.||.|+|
T Consensus 148 ~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~---------------g-~i~a~~vv~a~G 209 (387)
T COG0665 148 PTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG---------------G-TIEADKVVLAAG 209 (387)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC---------------c-cEEeCEEEEcCc
Confidence 34556788899999999999999 566668888888764 3 667788743 3 599999999999
Q ss_pred CCch
Q psy14497 202 SRGH 205 (561)
Q Consensus 202 ~~S~ 205 (561)
.++.
T Consensus 210 ~~~~ 213 (387)
T COG0665 210 AWAG 213 (387)
T ss_pred hHHH
Confidence 8766
No 90
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.24 E-value=2.5e-11 Score=113.28 Aligned_cols=138 Identities=24% Similarity=0.356 Sum_probs=78.0
Q ss_pred EEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhhhc
Q psy14497 26 IIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFLS 104 (561)
Q Consensus 26 vIVGgGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (561)
+|||||||||++|+.|.+. |++ |+|||+.+.+|+....- .....+.. ..... ..+. +.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~------g~~~v~v~e~~~~~Gg~w~~~-----~~~~~~~~----~~~~~-----~~~~-~~ 59 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER------GIDPVVVLERNDRPGGVWRRY-----YSYTRLHS----PSFFS-----SDFG-LP 59 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT------T---EEEEESSSSSTTHHHCH------TTTT-BS----SSCCT-----GGSS---
T ss_pred CEECcCHHHHHHHHHHHhC------CCCcEEEEeCCCCCCCeeEEe-----CCCCcccc----Ccccc-----cccc-CC
Confidence 7999999999999999999 999 99999999988753210 00000000 00000 0000 00
Q ss_pred CCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecc
Q psy14497 105 SKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKN 184 (561)
Q Consensus 105 ~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~ 184 (561)
.-....... .|. .........+.++.++|.+.+++.+++++++++|+++..++++ +.|++.+
T Consensus 60 ~~~~~~~~~--~~~--~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~------------ 121 (203)
T PF13738_consen 60 DFESFSFDD--SPE--WRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRD------------ 121 (203)
T ss_dssp CCCHSCHHH--HHH--HHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETT------------
T ss_pred ccccccccc--CCC--CCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEe------------
Confidence 000000000 000 0001222678889999999999999999999999999987444 7777743
Q ss_pred cccCeEEecCEEEEccCCCch
Q psy14497 185 FQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 185 f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+.+++||.||.|+|..|.
T Consensus 122 ---~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 122 ---GRTIRADRVVLATGHYSH 139 (203)
T ss_dssp ---S-EEEEEEEEE---SSCS
T ss_pred ---cceeeeeeEEEeeeccCC
Confidence 458999999999997655
No 91
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.23 E-value=3.9e-12 Score=132.20 Aligned_cols=142 Identities=25% Similarity=0.366 Sum_probs=36.7
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeeccee--Chhh-----HHhhccccccCCccccccc
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAII--DPRS-----IFELFPKEKLNKLFNTPVI 96 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~--~~~~-----l~~l~~~~~~~~~~~~~~~ 96 (561)
|||||||||||++||+.+++. |.+|+|+||.+.+|+...++... .... ...+..++.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~------G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~---------- 64 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA------GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFL---------- 64 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHH----------
T ss_pred CEEEECccHHHHHHHHHHHHC------CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHH----------
Confidence 899999999999999999999 99999999999998876554331 1100 111111110
Q ss_pred hhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccc
Q psy14497 97 EERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGIN 176 (561)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~ 176 (561)
..+...+... .+........+.+++..+...|.+.+.+.|+++++++.|.++..+ ++++++|.+.+.
T Consensus 65 ----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~--- 131 (428)
T PF12831_consen 65 ----NRLRARGGYP-----QEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETK--- 131 (428)
T ss_dssp ----HST-------------------------------------------------------------------------
T ss_pred ----HHHhhhcccc-----ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc---
Confidence 0000000000 000000000234666677777888887889999999999999875 678888888542
Q ss_pred cCCceecccccCeEEecCEEEEccCCC
Q psy14497 177 KEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 177 ~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
+| ..+++||++|+|+|.-
T Consensus 132 -~g--------~~~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 132 -SG--------RKEIRAKVFIDATGDG 149 (428)
T ss_dssp ---------------------------
T ss_pred -cc--------cccccccccccccccc
Confidence 22 2589999999999953
No 92
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.22 E-value=7e-11 Score=124.21 Aligned_cols=149 Identities=23% Similarity=0.337 Sum_probs=88.7
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC-CCCCceee---cceeChhhHHhhccccccCCcccccc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS-ELGAHILS---GAIIDPRSIFELFPKEKLNKLFNTPV 95 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~-~~g~~~~~---G~~~~~~~l~~l~~~~~~~~~~~~~~ 95 (561)
+.+|||+||||||||+.||+.|++. |.+|+|+|+.. .+|...++ |+ +....+.+.+..+ +.......
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~------G~kV~LiE~~~d~iG~m~CnpsiGG-~akg~lvrEidal--Gg~~g~~~ 72 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARM------GAKTLLLTHNLDTIGQMSCNPAIGG-IAKGHLVREIDAL--GGEMGKAI 72 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHc------CCcEEEEecccccccccCCcccccc-chhhHHHHHHHhc--CCHHHHHH
Confidence 3569999999999999999999999 99999999874 44431110 11 1111111111111 10000000
Q ss_pred chh--hhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEecc
Q psy14497 96 IEE--RFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNN 172 (561)
Q Consensus 96 ~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 172 (561)
... ++..+.... -|. .. .....+++..+.+.|.+.+.+. |++++ ...|+++..+ ++++.+|.+.+
T Consensus 73 d~~giq~r~ln~sk--------GpA-V~-s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e-~grV~GV~t~d 140 (618)
T PRK05192 73 DKTGIQFRMLNTSK--------GPA-VR-ALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVE-NGRVVGVVTQD 140 (618)
T ss_pred hhccCceeecccCC--------CCc-ee-CcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEec-CCEEEEEEECC
Confidence 000 011111100 010 00 0123578888889998888764 88885 5578888764 66788888843
Q ss_pred cccccCCceecccccCeEEecCEEEEccCCCc
Q psy14497 173 FGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 173 ~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S 204 (561)
|..+.|+.||+|+|.++
T Consensus 141 ---------------G~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 141 ---------------GLEFRAKAVVLTTGTFL 157 (618)
T ss_pred ---------------CCEEECCEEEEeeCcch
Confidence 56899999999999765
No 93
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.20 E-value=1.3e-08 Score=108.10 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=50.1
Q ss_pred EeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 127 IISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 127 ~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.++...|...|.+.+.+.|++++.+++|+++..+ ++ .++|.+.+. .+|+ ..+++++.||.|+|.++.
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~---~~g~-------~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDT---ATGK-------RYTVRARALVNAAGPWVK 217 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEc---CCCC-------EEEEEcCEEEECCCccHH
Confidence 4677888888888899999999999999999764 33 356665321 1121 147999999999998875
No 94
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.20 E-value=1.7e-09 Score=110.70 Aligned_cols=155 Identities=17% Similarity=0.232 Sum_probs=89.0
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC-CCceeecceeCh-----hhH-------Hhhccccc--c
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL-GAHILSGAIIDP-----RSI-------FELFPKEK--L 87 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~-g~~~~~G~~~~~-----~~l-------~~l~~~~~--~ 87 (561)
+||+|||||++|+++|+.|++. |++|+|+|+.... |....+++.+.+ ..+ .+++..+. .
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~------G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 74 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR------GLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKA 74 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHc
Confidence 6999999999999999999999 9999999998642 333223332211 000 01111111 1
Q ss_pred CCccc------cccchhhhh-------hhcCCC-Ccc----------cCCCCCCc---eeecCCcEEeeHHHHHHHHHHH
Q psy14497 88 NKLFN------TPVIEERFL-------FLSSKK-SYK----------IPSWILPI---CFKNHGNYIISLSDLVRWMGKK 140 (561)
Q Consensus 88 ~~~~~------~~~~~~~~~-------~~~~~~-~~~----------~~~~~~p~---~~~~~~~~~i~r~~l~~~L~~~ 140 (561)
+..+. ......... .....+ ... .|....+. .........++...+...|.+.
T Consensus 75 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~ 154 (365)
T TIGR03364 75 GIWVRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAY 154 (365)
T ss_pred CCCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHH
Confidence 11111 000111110 000000 000 01000011 1122335568889999999998
Q ss_pred HHHC-CCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 141 AENM-GIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 141 a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+.+. |++++.+++|+++.. + .|.+.+ | +++||.||.|+|..+.
T Consensus 155 ~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~---------------g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 155 LAEQHGVEFHWNTAVTSVET---G---TVRTSR---------------G-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHhcCCCEEEeCCeEEEEec---C---eEEeCC---------------C-cEEeCEEEECCCCChh
Confidence 8775 999999999999853 2 455532 2 5789999999998865
No 95
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.18 E-value=2.4e-08 Score=106.24 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=51.8
Q ss_pred EEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 126 YIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++...|...|...+.+.|++++.+++|+++..+ +..++|.+.+. .|+ ..+++++.||.|+|.++.
T Consensus 150 g~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~--~~~~~v~~~~~----~g~-------~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 150 CWVDDARLVVLNALDAAERGATILTRTRCVSARRE--GGLWRVETRDA----DGE-------TRTVRARALVNAAGPWVT 216 (502)
T ss_pred eeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEc--CCEEEEEEEeC----CCC-------EEEEEecEEEECCCccHH
Confidence 34778899999999999999999999999999864 33456666431 121 146999999999998875
No 96
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.17 E-value=4.3e-10 Score=117.98 Aligned_cols=165 Identities=22% Similarity=0.250 Sum_probs=98.1
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCC-CcEEEEcCCCCCCCce-eecceeC---hh---------hHHhhccccc-cC
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKE-IKICVLEKGSELGAHI-LSGAIID---PR---------SIFELFPKEK-LN 88 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G-~~V~ViEk~~~~g~~~-~~G~~~~---~~---------~l~~l~~~~~-~~ 88 (561)
||||||||+|||++|+.+++. | .+|+|+||.+..++.. .+++.+. .. ..+..+..+. ..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~------G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 74 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA------GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGG 74 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence 899999999999999999999 9 9999999998876543 2333221 10 0111111111 00
Q ss_pred Cc------ccc--ccchhhhhhhcCCCCcccCC------CCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceE
Q psy14497 89 KL------FNT--PVIEERFLFLSSKKSYKIPS------WILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSA 154 (561)
Q Consensus 89 ~~------~~~--~~~~~~~~~~~~~~~~~~~~------~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v 154 (561)
.. ... ......+.|+...-.+..+. ...+...... .....-..+.+.|.+.+++.|++++++++|
T Consensus 75 ~~~~~~~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v 153 (439)
T TIGR01813 75 RGINDPELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPT-GGAGSGAEIVQKLYKKAKKEGIDTRLNSKV 153 (439)
T ss_pred CCCCCHHHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCC-CCCCCHHHHHHHHHHHHHHcCCEEEeCCEe
Confidence 00 000 01123345554111111110 0011100000 001233578899999999999999999999
Q ss_pred eEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 155 SEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 155 ~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
+++..++++++++|.+.+ .+++. ..+.+|.||.|+|..+.-
T Consensus 154 ~~l~~~~~g~v~Gv~~~~----~~g~~-------~~~~a~~VVlAtGg~~~n 194 (439)
T TIGR01813 154 EDLIQDDQGTVVGVVVKG----KGKGI-------YIKAAKAVVLATGGFGSN 194 (439)
T ss_pred eEeEECCCCcEEEEEEEe----CCCeE-------EEEecceEEEecCCCCCC
Confidence 999886667888887642 11211 257899999999998874
No 97
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.17 E-value=4.9e-10 Score=119.03 Aligned_cols=167 Identities=19% Similarity=0.200 Sum_probs=99.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeC--hhh----------HHhhccccc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIID--PRS----------IFELFPKEK 86 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~--~~~----------l~~l~~~~~ 86 (561)
+.++||||||+|+||+++|+.+++. |.+|+||||.+..|+.. .+++.+. ... .++++.++.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~------Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~ 132 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDA------GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETL 132 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHC------CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHH
Confidence 4579999999999999999999999 99999999999877642 2222221 000 111222111
Q ss_pred -cCCc-----c-c--cccchhhhhhhcCCCCcccCCCC------CCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcC
Q psy14497 87 -LNKL-----F-N--TPVIEERFLFLSSKKSYKIPSWI------LPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSG 151 (561)
Q Consensus 87 -~~~~-----~-~--~~~~~~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g 151 (561)
.... + . .....+.+.|+...+ +.+.... .+........ ...-..+.+.|.+.+++.|++++++
T Consensus 133 ~~~~~~~d~~l~~~~~~~s~~~i~wl~~~G-v~~~~~~~~~g~~~~r~~~p~~g-~~~g~~l~~~L~~~~~~~gv~i~~~ 210 (506)
T PRK06481 133 KGGGGTNDKALLRYFVDNSASAIDWLDSMG-IKLDNLTITGGMSEKRTHRPHDG-SAVGGYLVDGLLKNVQERKIPLFVN 210 (506)
T ss_pred HhcCCCCCHHHHHHHHhccHHHHHHHHHcC-ceEeecccCCCCCCCceeccCCC-CCChHHHHHHHHHHHHHcCCeEEeC
Confidence 0000 0 0 001223445554321 1111000 0000000000 0122457888899998999999999
Q ss_pred ceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 152 FSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 152 ~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
++|+++..+ ++++.+|.+.. .+|+ ..++++|.||.|+|..+..
T Consensus 211 t~v~~l~~~-~g~V~Gv~~~~----~~g~-------~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 211 ADVTKITEK-DGKVTGVKVKI----NGKE-------TKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred CeeEEEEec-CCEEEEEEEEe----CCCe-------EEEEecCeEEEeCCCcccC
Confidence 999999764 67788887632 1111 1368999999999988775
No 98
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.17 E-value=2.5e-10 Score=122.05 Aligned_cols=174 Identities=18% Similarity=0.130 Sum_probs=100.2
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeC----h-hhHHhhccccc-cCCc
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIID----P-RSIFELFPKEK-LNKL 90 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~----~-~~l~~l~~~~~-~~~~ 90 (561)
..++++||+|||||+|||++|+.+++. |.+|+|+||....++... +++.+. + ...+..+.+.. .+..
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~------G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g 85 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRA------GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAG 85 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHc------CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCC
Confidence 456789999999999999999999999 999999999987654321 111111 0 11111111111 0000
Q ss_pred ------ccc--ccchhhhhhhcCCCCcccCCC----CCCceeecCC---cEEe----eHHHHHHHHHHHHHHCCCEEEcC
Q psy14497 91 ------FNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNHG---NYII----SLSDLVRWMGKKAENMGIDIFSG 151 (561)
Q Consensus 91 ------~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~---~~~i----~r~~l~~~L~~~a~~~Gv~i~~g 151 (561)
... ......+.|+... ++.+... ........+. .+.. .-..+.+.|.+++++.||+++.+
T Consensus 86 ~~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~ 164 (541)
T PRK07804 86 LCDPDAVRSLVAEGPRAVRELVAL-GARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREH 164 (541)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 000 0112234444331 1111100 0000000000 0111 23468889999998889999999
Q ss_pred ceEeEEEEcCCCCEEEEEecccccccCCceecccccC-eEEecCEEEEccCCCchh
Q psy14497 152 FSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLG-MELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 152 ~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g-~~i~ad~vV~AdG~~S~~ 206 (561)
+.|+++..++++++.+|.+.+.....+ ++ ..+.|+.||+|+|..|.+
T Consensus 165 ~~v~~Li~~~~g~v~Gv~~~~~~~~~~--------~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 165 ALALDLLTDGTGAVAGVTLHVLGEGSP--------DGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred eEeeeeEEcCCCeEEEEEEEeccCCCC--------CcEEEEEcCeEEECCCCCCCC
Confidence 999999876557888887642110001 11 368999999999998864
No 99
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.17 E-value=1.5e-08 Score=109.90 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=54.7
Q ss_pred EEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcC-CCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14497 126 YIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDS-KNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S 204 (561)
..++...+...|.+.+.+.|++++.+++|+++..++ ++.+++|.+.+. .+|+ ..++++|.||.|+|.+|
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg~-------~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTGK-------EFDVYAKVVVNAAGPFC 296 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCCc-------EEEEEeCEEEECCCHhH
Confidence 457889999999999999999999999999998754 467777776331 1111 12689999999999887
Q ss_pred h
Q psy14497 205 H 205 (561)
Q Consensus 205 ~ 205 (561)
.
T Consensus 297 ~ 297 (627)
T PLN02464 297 D 297 (627)
T ss_pred H
Confidence 6
No 100
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.16 E-value=1.3e-09 Score=102.76 Aligned_cols=155 Identities=18% Similarity=0.206 Sum_probs=88.1
Q ss_pred cCEEEEccCCCchhhHHHHHHcCCCCCCCCccccceeEEEEeeCCCcc-CCCcEEEEeccCCCCCCCceEEEEEcCCCeE
Q psy14497 193 AKYTLFAEGSRGHLSKQIIKKFNLDNKKDPQTYSLGIKELWTINPKLH-KKGLVIHTIGWPLDYKTYGGGFLYHMENNQI 271 (561)
Q Consensus 193 ad~vV~AdG~~S~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~ 271 (561)
|.++|+|||..|.+|+++. -......+.+ +|+. +.+... .++. -|.+ + +..+-..+|+.+.+.+
T Consensus 2 A~LtivaDG~~S~fRk~l~----~~~~~v~S~f-vGl~----l~~~~lp~~~~-ghvi---l--~~~~pil~YqI~~~et 66 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS----DNKPQVRSYF-VGLI----LKDAPLPKPNH-GHVI---L--GKPGPILLYQISSNET 66 (276)
T ss_pred CCEEEEecCCchHHHHhhc----CCCCceeeeE-EEEE----EcCCCCCCCCc-eEEE---E--cCCCcEEEEEcCCCce
Confidence 7899999999999999854 1111122222 3432 111111 1221 1222 1 2234456888877777
Q ss_pred EEEEEecCCCCCCCC---ChHHHHHHhh-------hChhHHHhhcCCeeeeecceeeccCCCccCCeeecCCEEEEecCC
Q psy14497 272 SIGYIISLDYKNPYL---SPFEEFQRYK-------THPKICKILKGGKRISYGARTITTGGLQSLPEFIFDGGAFIGCNA 341 (561)
Q Consensus 272 ~vg~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA 341 (561)
++-+-+..+. -|.. +..+.+++.. -++.+.+.++.++. +.+|..-+.+. ....+|++++|||+
T Consensus 67 R~Lvdvp~~k-~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~ri-----rsMPn~~lp~~-~~~~~G~vllGDA~ 139 (276)
T PF08491_consen 67 RVLVDVPGPK-LPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRI-----RSMPNSFLPAS-PNWKPGVVLLGDAA 139 (276)
T ss_pred EEEEEeCCCc-cCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCc-----ceecccccCCC-CCCCCCEEEEehhh
Confidence 7766655441 1221 2223332111 11223333444322 33444322222 33348999999999
Q ss_pred ccCCCcccccchHHHHHHHHHHHHHHHH
Q psy14497 342 GFMNVSRIKGIHTSIKSGILVADSIFKK 369 (561)
Q Consensus 342 ~~~~P~~g~G~~~Ai~~a~~lA~~l~~~ 369 (561)
+..+|++|+||+.|+.|+.++++.|...
T Consensus 140 nmrHPLTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 140 NMRHPLTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred cCcCCccccchhhHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999775
No 101
>PRK07121 hypothetical protein; Validated
Probab=99.16 E-value=5e-10 Score=118.97 Aligned_cols=170 Identities=22% Similarity=0.262 Sum_probs=100.3
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeC----hh---------hHHhhcc
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIID----PR---------SIFELFP 83 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~----~~---------~l~~l~~ 83 (561)
..+.++||||||||.|||++|+.+++. |.+|+|+||.+..|+.. .+|+.+. .+ ..+.++.
T Consensus 16 ~~~~~~DVvVVGaG~AGl~AA~~aae~------G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~ 89 (492)
T PRK07121 16 SWDDEADVVVVGFGAAGACAAIEAAAA------GARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYA 89 (492)
T ss_pred ccCCccCEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHH
Confidence 335689999999999999999999999 99999999998866543 2333221 00 0111111
Q ss_pred ccc-cCCc------cc--cccchhhhhhhcCCCCcccCCCC------CCc-----eee------------c--CCcEEe-
Q psy14497 84 KEK-LNKL------FN--TPVIEERFLFLSSKKSYKIPSWI------LPI-----CFK------------N--HGNYII- 128 (561)
Q Consensus 84 ~~~-~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~------~p~-----~~~------------~--~~~~~i- 128 (561)
.+. .... .. .....+.+.|+...+ +.+.... .|. ... . ......
T Consensus 90 ~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~G-v~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 168 (492)
T PRK07121 90 YLRVAVGPGVDEEKLRRYCEGSVEHFDWLEGLG-VPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQ 168 (492)
T ss_pred HHHHHhCCCCCHHHHHHHHHccHHHHHHHHHcC-cEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecC
Confidence 111 0000 00 011123334443211 1110000 000 000 0 000000
Q ss_pred ------eHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEec-CEEEEccC
Q psy14497 129 ------SLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYA-KYTLFAEG 201 (561)
Q Consensus 129 ------~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~a-d~vV~AdG 201 (561)
.-..+.+.|.+.+++.|++++++++|+++..++++++++|...+ +++ ...+++ +.||+|+|
T Consensus 169 ~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~-------~~~i~a~k~VVlAtG 236 (492)
T PRK07121 169 GPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGE-------TVAIRARKGVVLAAG 236 (492)
T ss_pred CCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCc-------EEEEEeCCEEEECCC
Confidence 23468889999999999999999999999876567888988732 121 136889 99999999
Q ss_pred CCchh
Q psy14497 202 SRGHL 206 (561)
Q Consensus 202 ~~S~~ 206 (561)
..+.-
T Consensus 237 g~~~N 241 (492)
T PRK07121 237 GFAMN 241 (492)
T ss_pred CcCcC
Confidence 88873
No 102
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.16 E-value=1e-09 Score=114.88 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=52.6
Q ss_pred EEeeHHHHHHHHHHHHHH----CC--CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEc
Q psy14497 126 YIISLSDLVRWMGKKAEN----MG--IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFA 199 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~----~G--v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~A 199 (561)
..++...+.+.|.+.+.+ .| ++++++++|+++..+ ++..+.|.+.+ | +++||.||.|
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~---------------G-~i~A~~VVva 268 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNR---------------G-EIRARFVVVS 268 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECC---------------C-EEEeCEEEEC
Confidence 578999999999999988 77 889999999999865 35566777642 3 7999999999
Q ss_pred cCCCch
Q psy14497 200 EGSRGH 205 (561)
Q Consensus 200 dG~~S~ 205 (561)
.|.+|.
T Consensus 269 AG~~S~ 274 (497)
T PTZ00383 269 ACGYSL 274 (497)
T ss_pred cChhHH
Confidence 999876
No 103
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.15 E-value=1.9e-08 Score=103.83 Aligned_cols=168 Identities=19% Similarity=0.263 Sum_probs=100.5
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-------eecce----eChh----h------H
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-------LSGAI----IDPR----S------I 78 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-------~~G~~----~~~~----~------l 78 (561)
++.+||+|||||+.|+-.|..++.+ |++|+|+|+++...+.. ++|.- .+-+ + +
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~R------Gl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL 83 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGR------GLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVL 83 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhC------CCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHH
Confidence 3789999999999999999999999 99999999998754331 22210 0111 1 1
Q ss_pred HhhccccccCCccccc---------cchhhhhhhcCCCCc--------ccC---CCCCCceeec--------CCcEEeeH
Q psy14497 79 FELFPKEKLNKLFNTP---------VIEERFLFLSSKKSY--------KIP---SWILPICFKN--------HGNYIISL 130 (561)
Q Consensus 79 ~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--------~~~---~~~~p~~~~~--------~~~~~i~r 130 (561)
.+..|.......+..+ .-...+...+...++ .+. .....+.+.. ...+.++-
T Consensus 84 ~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vdd 163 (532)
T COG0578 84 LRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDD 163 (532)
T ss_pred HHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceech
Confidence 1111111100000000 001111111110000 000 0001111111 12456777
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 131 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.+|.-.++..|.+.|.+++..++|+++..+ ++ +++|++.|. .+|+. .+++|+.||.|+|.++-
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~---~tg~~-------~~ira~~VVNAaGpW~d 226 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDR---ETGET-------YEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEec---CCCcE-------EEEEcCEEEECCCccHH
Confidence 888888888888999999999999999875 44 999998762 33432 57999999999997765
No 104
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.15 E-value=2.1e-10 Score=114.42 Aligned_cols=144 Identities=22% Similarity=0.325 Sum_probs=85.9
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEE-cCCCCCCCceeeccee--ChhhHHhhccccccCCccccccchhhh
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVL-EKGSELGAHILSGAII--DPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~Vi-Ek~~~~g~~~~~G~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
||+|||||.||+.||+.+++. |.+|+|| ++.+..+...++..+- ....+.+-+..+ +..+....+...+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~------G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidal--gg~m~~~aD~~~i 72 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM------GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDAL--GGLMGRAADETGI 72 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHT--T-SHHHHHHHHEE
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEeecccccccccchhhhccccccchhHHHhhh--hhHHHHHHhHhhh
Confidence 899999999999999999999 9999999 5555554332222111 112222211111 1111111111111
Q ss_pred --hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEeccccccc
Q psy14497 101 --LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGINK 177 (561)
Q Consensus 101 --~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~ 177 (561)
..+....+ |.. ....+.++|..+.+++.+.+++ .+++++ ..+|+++..+ ++++.+|.+.+
T Consensus 73 ~~~~lN~skG--------pav--~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~----- 135 (392)
T PF01134_consen 73 HFRMLNRSKG--------PAV--HALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVE-NGKVKGVVTKD----- 135 (392)
T ss_dssp EEEEESTTS---------GGC--TEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEEC-TTEEEEEEETT-----
T ss_pred hhhcccccCC--------CCc--cchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEec-CCeEEEEEeCC-----
Confidence 11111110 110 0114589999999999999988 689886 5689999875 78899999953
Q ss_pred CCceecccccCeEEecCEEEEccCC
Q psy14497 178 EGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
|..+.+|.||+|+|.
T Consensus 136 ----------g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 136 ----------GEEIEADAVVLATGT 150 (392)
T ss_dssp ----------SEEEEECEEEE-TTT
T ss_pred ----------CCEEecCEEEEeccc
Confidence 678999999999998
No 105
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=5.1e-10 Score=121.59 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=94.0
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC--ceeecceeC-h-------hhHHhhccccc-c
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA--HILSGAIID-P-------RSIFELFPKEK-L 87 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~--~~~~G~~~~-~-------~~l~~l~~~~~-~ 87 (561)
+.+++||+|||||.|||+||+.+++. |.+|+|+||...++. ...+++.+. . ...+..+.+.. .
T Consensus 32 ~~~~~DVlVVG~G~AGl~AAi~Aae~------G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~ 105 (640)
T PRK07573 32 NKRKFDVIVVGTGLAGASAAATLGEL------GYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKG 105 (640)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc------CCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHh
Confidence 34679999999999999999999999 999999998766532 222211111 0 11111111111 0
Q ss_pred CCcc------c--cccchhhhhhhcCCCCcccCC----CCCCceeecCC-----------cEEeeHHHHHHHHHHHHHHC
Q psy14497 88 NKLF------N--TPVIEERFLFLSSKKSYKIPS----WILPICFKNHG-----------NYIISLSDLVRWMGKKAENM 144 (561)
Q Consensus 88 ~~~~------~--~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~-----------~~~i~r~~l~~~L~~~a~~~ 144 (561)
+..+ . .......+.|+... ++.+.. ...+.....+. +..+. ..+.+.|.+.+++.
T Consensus 106 g~~~~d~~lv~~l~~~s~~~i~wL~~~-GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~-~~l~~~L~~~~~~~ 183 (640)
T PRK07573 106 GDFRAREANVYRLAEVSVNIIDQCVAQ-GVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLL-LGAYQALSRQIAAG 183 (640)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhc-CCccccCCCCceeccccCCcccceeEeCCCCCchhHH-HHHHHHHHHHHHhc
Confidence 0000 0 00112334444331 111110 00000000000 00010 12336677778788
Q ss_pred CCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 145 GIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 145 Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
||++++++.++++..+ +++++||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 184 gV~i~~~t~v~~Li~d-~g~V~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 184 TVKMYTRTEMLDLVVV-DGRARGIVARNL---VTGEI-------ERHTADAVVLATGGYGNV 234 (640)
T ss_pred CCEEEeceEEEEEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCcccC
Confidence 9999999999999875 678889876431 12221 368999999999998764
No 106
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.14 E-value=6.1e-10 Score=117.74 Aligned_cols=170 Identities=16% Similarity=0.175 Sum_probs=98.0
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC--CCCc-eeeccee-C---h-------hhHHhhccccc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE--LGAH-ILSGAII-D---P-------RSIFELFPKEK 86 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~--~g~~-~~~G~~~-~---~-------~~l~~l~~~~~ 86 (561)
+++||||||||+|||++|+.|++. |.+|+|+||.+. .|+. ..++++. . + ...++++..+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~------G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREA------GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLL 76 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHH
Confidence 569999999999999999999999 999999999874 3443 2222211 0 0 00111222221
Q ss_pred -cCCcc-c-------cccchhhhhhhcCCCCcccCCCCCCceeecCCc--EEeeHHHHHHHHHHHHHHCCCEEEcCceEe
Q psy14497 87 -LNKLF-N-------TPVIEERFLFLSSKKSYKIPSWILPICFKNHGN--YIISLSDLVRWMGKKAENMGIDIFSGFSAS 155 (561)
Q Consensus 87 -~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~ 155 (561)
..... . .......+.|+...+ +.+.............. +.-.-..+.+.|.+.+++.|++++++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~s~~~~~wl~~~G-v~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~ 155 (466)
T PRK08274 77 RVTGGRTDEALARLLIRESSDCRDWMRKHG-VRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVT 155 (466)
T ss_pred HhhCCCCCHHHHHHHHHcCHHHHHHHHhCC-ceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 00000 0 001123344444321 11110000000000000 011135688889999999999999999999
Q ss_pred EEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHH
Q psy14497 156 EILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQ 209 (561)
Q Consensus 156 ~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~ 209 (561)
++..+ ++++++|.+.+ .+|+ ...++++.||+|+|..+.-+..
T Consensus 156 ~l~~~-~g~v~gv~~~~----~~g~-------~~~i~a~~VIlAtGg~~~n~~~ 197 (466)
T PRK08274 156 ALELD-DGRFVGARAGS----AAGG-------AERIRAKAVVLAAGGFESNREW 197 (466)
T ss_pred EEEec-CCeEEEEEEEc----cCCc-------eEEEECCEEEECCCCCCCCHHH
Confidence 99875 67788887631 1221 2468999999999988775433
No 107
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=5.6e-10 Score=119.99 Aligned_cols=170 Identities=19% Similarity=0.241 Sum_probs=98.0
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeC--------h-hhHHhhccccc-c
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIID--------P-RSIFELFPKEK-L 87 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~--------~-~~l~~l~~~~~-~ 87 (561)
+.+++||||||||.|||+||+.+++. |.+|+|+||.+..++.. .+++.+. + ...+..+.+.. .
T Consensus 2 ~~~~~DVvVVG~G~AGl~AAl~Aae~------G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~ 75 (566)
T PRK06452 2 EKIEYDAVVIGGGLAGLMSAHEIASA------GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKG 75 (566)
T ss_pred CcccCcEEEECccHHHHHHHHHHHHC------CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHh
Confidence 45789999999999999999999999 99999999997655532 1222111 0 11111111110 0
Q ss_pred CCcc------c--cccchhhhhhhcCCCCcccCCCC---C-CceeecCC-cEEe-----eHHHHHHHHHHHHHHCCCEEE
Q psy14497 88 NKLF------N--TPVIEERFLFLSSKKSYKIPSWI---L-PICFKNHG-NYII-----SLSDLVRWMGKKAENMGIDIF 149 (561)
Q Consensus 88 ~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~---~-p~~~~~~~-~~~i-----~r~~l~~~L~~~a~~~Gv~i~ 149 (561)
+..+ . .....+.+.|+... ++.+.... + ......+. .... .-..+.+.|.+.+.+.||+++
T Consensus 76 g~~~~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~ 154 (566)
T PRK06452 76 GDYLVDQDAAELLSNKSGEIVMLLERW-GALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFY 154 (566)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHC-CCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 0000 0 01112334444331 11111000 0 00000000 0000 124578888888888899999
Q ss_pred cCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 150 SGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 150 ~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
+++.++++..+ +|+++||...+. .+|+. ..++|+.||+|+|..+.+
T Consensus 155 ~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 155 NEWFSLDLVTD-NKKVVGIVAMQM---KTLTP-------FFFKTKAVVLATGGMGML 200 (566)
T ss_pred eCcEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEeCeEEECCCccccc
Confidence 99999999875 788999876431 12221 368999999999988753
No 108
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.13 E-value=7.3e-10 Score=115.61 Aligned_cols=161 Identities=13% Similarity=0.183 Sum_probs=91.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
...+|+|||||||||++|..|++. |++|+|||+.+.+|+............+ .+.+. ...... .....+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~------G~~v~vfE~~~~vGG~W~~~~~~~~d~~-~~~~~---~~~~~s-~~Y~~L 77 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE------GHTVVVFEREKQVGGLWVYTPKSESDPL-SLDPT---RSIVHS-SVYESL 77 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc------CCeEEEEecCCCCcceeecCCCcCCCcc-ccCCC---Ccccch-hhhhhh
Confidence 468999999999999999999999 9999999999998875432110000000 00000 000000 000000
Q ss_pred hhhcCCCCcccCCCCCCceee---cCCcEEeeHHHHHHHHHHHHHHCCCE--EEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14497 101 LFLSSKKSYKIPSWILPICFK---NHGNYIISLSDLVRWMGKKAENMGID--IFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~---~~~~~~i~r~~l~~~L~~~a~~~Gv~--i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
....+.....+..+.++.... ........+.++.++|.+.++..|+. |+++++|+++... + ..+.|.+.+.
T Consensus 78 ~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~-~~w~V~~~~~-- 153 (461)
T PLN02172 78 RTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-D-GKWRVQSKNS-- 153 (461)
T ss_pred hccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-C-CeEEEEEEcC--
Confidence 000000011111111211100 00111246788999999999998887 9999999999764 2 3466666321
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++. ..+..+|.||+|+|..+.
T Consensus 154 --~~~-------~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 154 --GGF-------SKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred --CCc-------eEEEEcCEEEEeccCCCC
Confidence 111 125689999999997654
No 109
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.13 E-value=2e-09 Score=113.06 Aligned_cols=82 Identities=12% Similarity=0.179 Sum_probs=58.1
Q ss_pred CCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14497 123 HGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 123 ~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
.....++...+.+.|.+.+.+.|++++++++|+++..++++. +.|.+.+. .+| .+.+++||+||.|.|.
T Consensus 170 p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~-v~v~~~~~---~~g-------~~~~i~A~~VV~AAG~ 238 (483)
T TIGR01320 170 AEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGS-WTVTVKNT---RTG-------GKRTLNTRFVFVGAGG 238 (483)
T ss_pred CCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCe-EEEEEeec---cCC-------ceEEEECCEEEECCCc
Confidence 346678999999999999999999999999999998753433 33443210 011 1236899999999998
Q ss_pred CchhhHHHHHHcCCCC
Q psy14497 203 RGHLSKQIIKKFNLDN 218 (561)
Q Consensus 203 ~S~~~~~l~~~~g~~~ 218 (561)
+|. .+.+.+|+..
T Consensus 239 ~s~---~La~~~Gi~~ 251 (483)
T TIGR01320 239 GAL---PLLQKSGIPE 251 (483)
T ss_pred chH---HHHHHcCCCc
Confidence 876 2333466653
No 110
>PRK08275 putative oxidoreductase; Provisional
Probab=99.13 E-value=4.4e-10 Score=120.80 Aligned_cols=173 Identities=20% Similarity=0.299 Sum_probs=97.7
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ec-ceeCh------hhHHhhccccc-cC
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SG-AIIDP------RSIFELFPKEK-LN 88 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G-~~~~~------~~l~~l~~~~~-~~ 88 (561)
.+.+++||||||||.|||+||+.+++. .+|.+|+|+||.+..++... .+ ..+.. ...+..+.... .+
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~ 80 (554)
T PRK08275 5 TQEVETDILVIGGGTAGPMAAIKAKER----NPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIAN 80 (554)
T ss_pred ceeEecCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhc
Confidence 345789999999999999999999986 33689999999986433221 11 01110 11111111111 00
Q ss_pred Cc------ccc--ccchhhhhhhcCCCCcccCC-----CCCCceeecCCcEE--e-eHHHHHHHHHHHHHHCCCEEEcCc
Q psy14497 89 KL------FNT--PVIEERFLFLSSKKSYKIPS-----WILPICFKNHGNYI--I-SLSDLVRWMGKKAENMGIDIFSGF 152 (561)
Q Consensus 89 ~~------~~~--~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~--i-~r~~l~~~L~~~a~~~Gv~i~~g~ 152 (561)
.. +.. ....+.+.|+... ++.+.. ..... ....+.+. . .-..+.+.|.+.+.+.|+++++++
T Consensus 81 ~~~~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~-~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~ 158 (554)
T PRK08275 81 DGIVDQKAVYAYAEHSFETIQQLDRW-GVKFEKDETGDYAVKK-VHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRI 158 (554)
T ss_pred CCCccHHHHHHHHHhhHHHHHHHHHC-CCeeEeCCCCCEeeec-ccccCcccccCCChHHHHHHHHHHHHHCCCEEEcce
Confidence 00 000 0112334444331 111110 00000 00001111 0 123688899999988999999999
Q ss_pred eEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 153 SASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 153 ~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
.++++..++++++.||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 159 ~v~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 159 MATRLLTDADGRVAGALGFDC---RTGEF-------LVIRAKAVILCCGAAGRL 202 (554)
T ss_pred EEEEEEEcCCCeEEEEEEEec---CCCcE-------EEEECCEEEECCCCcccc
Confidence 999998754677888875221 12221 368999999999998754
No 111
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.11 E-value=1.3e-09 Score=117.96 Aligned_cols=170 Identities=19% Similarity=0.235 Sum_probs=98.9
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeC-------hhhHHhhccccc-cCC
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIID-------PRSIFELFPKEK-LNK 89 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~-------~~~l~~l~~~~~-~~~ 89 (561)
..+++||||||||.|||+||+.+++. |.+|+|+||....++.. .+++.+. ....+..+.+.. .+.
T Consensus 26 ~~~~~DVlVIG~G~AGl~AAi~Aa~~------G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~ 99 (617)
T PTZ00139 26 IDHTYDAVVVGAGGAGLRAALGLVEL------GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSD 99 (617)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc------CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhC
Confidence 34579999999999999999999999 99999999998765542 1211111 011111111110 000
Q ss_pred c------cc--cccchhhhhhhcCCCCcccCCC----CCCceeecC--------CcEEe------eHHHHHHHHHHHHHH
Q psy14497 90 L------FN--TPVIEERFLFLSSKKSYKIPSW----ILPICFKNH--------GNYII------SLSDLVRWMGKKAEN 143 (561)
Q Consensus 90 ~------~~--~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~--------~~~~i------~r~~l~~~L~~~a~~ 143 (561)
. .. .....+.+.|+... ++.+... ........+ ....+ .-..+.+.|.+.+++
T Consensus 100 ~~~d~~lv~~l~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~ 178 (617)
T PTZ00139 100 WLGDQDAIQYMCREAPQAVLELESY-GLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLK 178 (617)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhc-CCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHh
Confidence 0 00 01112334444331 1111100 000000000 00111 124788999999999
Q ss_pred CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 144 MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 144 ~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.||+++.++.++++..++++++.||...+ ..+|+. ..+.|+.||+|+|..+.
T Consensus 179 ~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 179 YDCNFFIEYFALDLIMDEDGECRGVIAMS---MEDGSI-------HRFRAHYTVIATGGYGR 230 (617)
T ss_pred CCCEEEeceEEEEEEECCCCEEEEEEEEE---CCCCeE-------EEEECCcEEEeCCCCcc
Confidence 99999999999999875578888887532 122321 46899999999998765
No 112
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=8.3e-10 Score=119.18 Aligned_cols=172 Identities=22% Similarity=0.274 Sum_probs=97.4
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-e-cce---eC---hhhHHhhccccc-cC
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-S-GAI---ID---PRSIFELFPKEK-LN 88 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~-G~~---~~---~~~l~~l~~~~~-~~ 88 (561)
++++++||||||||+|||+||+.+++. |.+|+|+||....++... + |++ .. ....+..+.+.. .+
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~------G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g 81 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARA------GLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGS 81 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHC------CCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhc
Confidence 345789999999999999999999999 999999999866554321 1 211 11 111111111100 00
Q ss_pred Cc------ccc--ccchhhhhhhcCCCCcccCC----CCCCceeecC-------CcEE------eeHHHHHHHHHHHHHH
Q psy14497 89 KL------FNT--PVIEERFLFLSSKKSYKIPS----WILPICFKNH-------GNYI------ISLSDLVRWMGKKAEN 143 (561)
Q Consensus 89 ~~------~~~--~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~-------~~~~------i~r~~l~~~L~~~a~~ 143 (561)
.. ... ....+.+.|+... ++.+.. .........+ .... ..-..|.+.|.+.+.+
T Consensus 82 ~~~~d~~~v~~~~~~a~~~i~~L~~~-Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~ 160 (591)
T PRK07057 82 DWLGDQDAIEFMCREAPNVVYELEHF-GMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVA 160 (591)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhc-CCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHh
Confidence 00 000 0011223333221 111100 0000000000 0000 0124688889998888
Q ss_pred CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 144 MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 144 ~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
.|++++.++.++++..++++++.||...+. .+|+. ..+.++.||+|+|..+.+
T Consensus 161 ~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 161 AKTQFFVEWMALDLIRDADGDVLGVTALEM---ETGDV-------YILEAKTTLFATGGAGRI 213 (591)
T ss_pred cCCEEEeCcEEEEEEEcCCCeEEEEEEEEc---CCCeE-------EEEECCeEEECCCCcccc
Confidence 999999999999998765678889876321 12221 368899999999998764
No 113
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.09 E-value=6.6e-10 Score=120.33 Aligned_cols=169 Identities=18% Similarity=0.236 Sum_probs=98.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeC-------hhhHHhhccccc-cCCc-
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIID-------PRSIFELFPKEK-LNKL- 90 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~-------~~~l~~l~~~~~-~~~~- 90 (561)
+++||||||||+|||+||+.+++. |.+|+|+||....+++.. +++.++ ....+..+.+.. .+..
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~------G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~ 122 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEH------GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWL 122 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhc------CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCC
Confidence 468999999999999999999999 999999999987665421 111111 111111111111 0000
Q ss_pred -----ccc--ccchhhhhhhcCCCCcccCCC----CCCceeecCC--------cEE------eeHHHHHHHHHHHHHHCC
Q psy14497 91 -----FNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNHG--------NYI------ISLSDLVRWMGKKAENMG 145 (561)
Q Consensus 91 -----~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~--------~~~------i~r~~l~~~L~~~a~~~G 145 (561)
... ......+.|+... ++.+... ........+. ... ..-..+.+.|.+.+.+.|
T Consensus 123 ~d~~lv~~l~~~s~~~i~~L~~~-Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~g 201 (635)
T PLN00128 123 GDQDAIQYMCREAPKAVIELENY-GLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHN 201 (635)
T ss_pred CCHHHHHHHHHhHHHHHHHHHhC-CCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCC
Confidence 000 1112334444331 1111100 0000000000 001 123468889999998899
Q ss_pred CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 146 IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 146 v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
|+++.++.++++..++++++.||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 202 v~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 202 TQFFVEYFALDLIMDSDGACQGVIALNM---EDGTL-------HRFRAHSTILATGGYGRA 252 (635)
T ss_pred CEEEEeeEEEEEEEcCCCEEEEEEEEEc---CCCeE-------EEEEcCeEEECCCCCccc
Confidence 9999999999988765678888876321 12321 468999999999988763
No 114
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=6.3e-10 Score=119.92 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=98.0
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-eccee----C---hhhHHhhccccc-cCCc-
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAII----D---PRSIFELFPKEK-LNKL- 90 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~----~---~~~l~~l~~~~~-~~~~- 90 (561)
.++||||||||.|||+||+.+++. |.+|+|+||....++... +++.+ . ....+..+.+.. .+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~ 79 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS------GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI 79 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc------CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCC
Confidence 578999999999999999999999 999999999976554321 11111 1 011111111111 0000
Q ss_pred -----ccc--ccchhhhhhhcCCCCcccCCC----CCCceeecC----------C-cEEe--eHHHHHHHHHHHHHHCCC
Q psy14497 91 -----FNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNH----------G-NYII--SLSDLVRWMGKKAENMGI 146 (561)
Q Consensus 91 -----~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~----------~-~~~i--~r~~l~~~L~~~a~~~Gv 146 (561)
... ......+.|+... ++.+... ........+ . .+.. .-..|...|.+++.+.|+
T Consensus 80 ~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi 158 (588)
T PRK08958 80 GDQDAIEYMCKTGPEAILELEHM-GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT 158 (588)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCC
Confidence 000 1112334444321 1111100 000000000 0 0000 124688889988888899
Q ss_pred EEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 147 DIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 147 ~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
+++.++.++++..+++++++||..-+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 159 ~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 159 TIFSEWYALDLVKNQDGAVVGCTAICI---ETGEV-------VYFKARATVLATGGAGRI 208 (588)
T ss_pred EEEeCcEEEEEEECCCCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCCcccc
Confidence 999999999998765788999876321 12321 368999999999988764
No 115
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=99.09 E-value=2.7e-11 Score=86.96 Aligned_cols=57 Identities=25% Similarity=0.472 Sum_probs=36.9
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCC-CCeeE
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPT-QNIEW 547 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~-~~i~~ 547 (561)
.+|+++|+. ++.|+.+||.++++..+..++ +.+.++++.|++||.|..+||+ +||++
T Consensus 2 ~Id~~~Ci~------Cg~C~~~Cp~~~~~~i~~~~~-~~~~v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 2 VIDEDKCIG------CGKCVRACPDGAIDAIEVDEG-KKVPVNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp EE-TTT----------SCCCHHCCCCS-S-ECCTTT-TSSECE-TT--S-SCCCCCSSSTTSEEE
T ss_pred EECcccccC------hhhHHhHcCccceeeEEecCC-eeEEeccccCcCcCcccccCCCccCCCC
Confidence 468899999 467999999987776654333 3467889999999999999996 99986
No 116
>KOG1399|consensus
Probab=99.09 E-value=1.3e-09 Score=111.64 Aligned_cols=145 Identities=18% Similarity=0.236 Sum_probs=95.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeC--hhhHHhhccccccCCccccccch
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIID--PRSIFELFPKEKLNKLFNTPVIE 97 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~--~~~l~~l~~~~~~~~~~~~~~~~ 97 (561)
++..+|+|||||||||++|..|.+. |++|+|+||.+.+|+-...-...+ ... ++.. +.....
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~------g~~v~vfEr~~~iGGlW~y~~~~~~~~ss---~Y~~------l~tn~p- 67 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLRE------GHEVVVFERTDDIGGLWKYTENVEVVHSS---VYKS------LRTNLP- 67 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHC------CCCceEEEecCCccceEeecCcccccccc---hhhh------hhccCC-
Confidence 4689999999999999999999999 999999999999987543210000 000 0000 000111
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC--CEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG--IDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~G--v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
+.-..++.+.+|.. ...+..++.++.++|.+.|++-+ ..|.++++|..+....+ ..|.|.+.+.+.
T Consensus 68 --------Ke~~~~~dfpf~~~---~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~ 135 (448)
T KOG1399|consen 68 --------KEMMGYSDFPFPER---DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGT 135 (448)
T ss_pred --------hhhhcCCCCCCccc---CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCc
Confidence 11112333334331 23555778899999999999865 47899998888876532 357777744210
Q ss_pred ccCCceecccccCeEEecCEEEEccCCC
Q psy14497 176 NKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
...+.-+|.||.|+|.+
T Consensus 136 -----------~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 136 -----------QIEEEIFDAVVVCTGHY 152 (448)
T ss_pred -----------ceeEEEeeEEEEcccCc
Confidence 01467899999999977
No 117
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.09 E-value=6.2e-10 Score=116.10 Aligned_cols=168 Identities=26% Similarity=0.356 Sum_probs=94.7
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-eccee---C-h--------hhHHhhccccc-cCC
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAII---D-P--------RSIFELFPKEK-LNK 89 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~---~-~--------~~l~~l~~~~~-~~~ 89 (561)
||||||+|+|||++|+.++++ |.+|+|+||.+..|+... +++.+ . + ...+..+.++. ...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~------G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA------GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGG 74 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT------TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHhhh------cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccc
Confidence 899999999999999999999 999999999998665321 11111 0 0 11122222221 000
Q ss_pred cc-c-------cccchhhhhhhcCCCCcccCC----CCCCcee--ecCC------------cEEeeHHHHHHHHHHHHHH
Q psy14497 90 LF-N-------TPVIEERFLFLSSKKSYKIPS----WILPICF--KNHG------------NYIISLSDLVRWMGKKAEN 143 (561)
Q Consensus 90 ~~-~-------~~~~~~~~~~~~~~~~~~~~~----~~~p~~~--~~~~------------~~~i~r~~l~~~L~~~a~~ 143 (561)
.. . .....+.+.|+.+. .+.+.. ....... .... .....-..+.+.|.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 153 (417)
T PF00890_consen 75 GLNDPDLVRAFVENSPEAIDWLEEL-GVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEE 153 (417)
T ss_dssp T-S-HHHHHHHHHHHHHHHHHHHHT-T--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhcccceehhhhhh-cccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhh
Confidence 00 0 01122334444432 111111 0000000 0000 1112456789999999999
Q ss_pred CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch-hhHH
Q psy14497 144 MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH-LSKQ 209 (561)
Q Consensus 144 ~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~-~~~~ 209 (561)
.|++|+++++++++..+ ++++++|...+. .+|+. .+++|+.||+|+|..+. +.++
T Consensus 154 ~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~---~~g~~-------~~i~A~aVIlAtGG~~~~~~~~ 209 (417)
T PF00890_consen 154 AGVDIRFNTRVTDLITE-DGRVTGVVAENP---ADGEF-------VRIKAKAVILATGGFGGELLRQ 209 (417)
T ss_dssp TTEEEEESEEEEEEEEE-TTEEEEEEEEET---TTCEE-------EEEEESEEEE----BGGHHHHH
T ss_pred cCeeeeccceeeeEEEe-CCceeEEEEEEC---CCCeE-------EEEeeeEEEeccCccccccccc
Confidence 99999999999999985 779999988521 23322 36899999999999986 4344
No 118
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.08 E-value=1.3e-09 Score=115.34 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=87.3
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
..|+|||||++||++|..|.+. |++|++|||.+.+|+-........+ .....++ .+...+....
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~------g~~~~~fE~~~~iGG~W~~~~~~~~-g~~~~y~------sl~~n~sk~~--- 65 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE------GLEVTCFEKSDDIGGLWRYTENPED-GRSSVYD------SLHTNTSKEM--- 65 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT------T-EEEEEESSSSSSGGGCHSTTCCC-SEGGGST------T-B-SS-GGG---
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCeEEecCCCCCccCeeCCcCCC-Ccccccc------ceEEeeCchH---
Confidence 4799999999999999999999 9999999999999874321100000 0000000 0000111111
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCC--EEEcCceEeEEEEcCCC---CEEEEEeccccccc
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGI--DIFSGFSASEILYDSKN---NVCGIATNNFGINK 177 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv--~i~~g~~v~~i~~~~~g---~v~~V~~~~~~~~~ 177 (561)
..++.+.+|.. ... ..++.++.++|.+.|+.-++ .|+++++|+++...++. ..|.|.+.+
T Consensus 66 ------~~fsdfp~p~~---~p~-f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~----- 130 (531)
T PF00743_consen 66 ------MAFSDFPFPED---YPD-FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN----- 130 (531)
T ss_dssp ------SCCTTS-HCCC---CSS-SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----
T ss_pred ------hcCCCcCCCCC---CCC-CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----
Confidence 11222223321 112 36889999999999998664 79999999999876442 356676632
Q ss_pred CCceecccccCeEEecCEEEEccCCCch
Q psy14497 178 EGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+|+. .+..+|.||.|+|.++.
T Consensus 131 ~g~~-------~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 131 DGKE-------ETEEFDAVVVATGHFSK 151 (531)
T ss_dssp TTEE-------EEEEECEEEEEE-SSSC
T ss_pred CCeE-------EEEEeCeEEEcCCCcCC
Confidence 2321 35578999999998876
No 119
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=8.8e-10 Score=119.13 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=96.4
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeCh-------hhHHhhccccc-cCC
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIIDP-------RSIFELFPKEK-LNK 89 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~~-------~~l~~l~~~~~-~~~ 89 (561)
...++||||||||+|||+||+.+++. |.+|+|+||....++.. .+.+.+.. ...+..+.+.. .+.
T Consensus 9 ~~~~~DVvVIG~G~AGl~AAl~Aa~~------G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~ 82 (598)
T PRK09078 9 IDHKYDVVVVGAGGAGLRATLGMAEA------GLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSD 82 (598)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc------CCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhcc
Confidence 44679999999999999999999999 99999999987655432 11111110 11111111100 000
Q ss_pred c------ccc--ccchhhhhhhcCCCCcccCCC----CCCceeecCC------------cEEe--eHHHHHHHHHHHHHH
Q psy14497 90 L------FNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNHG------------NYII--SLSDLVRWMGKKAEN 143 (561)
Q Consensus 90 ~------~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~------------~~~i--~r~~l~~~L~~~a~~ 143 (561)
. ... ....+.+.|+... ++.+... ........+. .+.. .-..+.+.|.+.+.+
T Consensus 83 ~~~d~~lv~~l~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~ 161 (598)
T PRK09078 83 WLGDQDAIEYMCREAPAAVYELEHY-GVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLK 161 (598)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhh
Confidence 0 000 0111223343321 1111000 0000000000 0000 123688889999988
Q ss_pred CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 144 MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 144 ~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.||++++++.++++..+++++++||...+ .++|+. ..+.|+.||+|+|..+.
T Consensus 162 ~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 162 HNAEFFIEYFALDLIMDDGGVCRGVVAWN---LDDGTL-------HRFRAHMVVLATGGYGR 213 (598)
T ss_pred cCCEEEEeEEEEEEEEcCCCEEEEEEEEE---CCCCcE-------EEEEcCEEEECCCCCcc
Confidence 99999999999999876557899987532 112321 37899999999998875
No 120
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.06 E-value=1e-09 Score=118.27 Aligned_cols=172 Identities=19% Similarity=0.232 Sum_probs=96.5
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeC----h-hhHHhhccccc-cCCcc
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIID----P-RSIFELFPKEK-LNKLF 91 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~----~-~~l~~l~~~~~-~~~~~ 91 (561)
+++++||||||||+|||+||+.+++. .+|.+|+|+||....++... +++.+. + ...+..+.+.. .+..+
T Consensus 1 ~t~~~DVlVVG~G~AGl~AAi~Aa~~----g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~ 76 (582)
T PRK09231 1 QTFQADLAIIGAGGAGLRAAIAAAEA----NPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWL 76 (582)
T ss_pred CceeeeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccC
Confidence 35679999999999999999999987 23589999999977665432 222111 0 11111111111 01000
Q ss_pred ------c--cccchhhhhhhcCCCCcccCCCC---C-CceeecCC---cEEe---eHHHHHHHHHHHHHH-CCCEEEcCc
Q psy14497 92 ------N--TPVIEERFLFLSSKKSYKIPSWI---L-PICFKNHG---NYII---SLSDLVRWMGKKAEN-MGIDIFSGF 152 (561)
Q Consensus 92 ------~--~~~~~~~~~~~~~~~~~~~~~~~---~-p~~~~~~~---~~~i---~r~~l~~~L~~~a~~-~Gv~i~~g~ 152 (561)
. .......+.|+... ++.+.... + ......+. .+.. .-..+.+.|.+.+.+ .+++++.++
T Consensus 77 ~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~ 155 (582)
T PRK09231 77 CEQDVVEYFVHHCPTEMTQLEQW-GCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEH 155 (582)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCe
Confidence 0 01112334444331 11111000 0 00000000 0111 123677888888776 489999999
Q ss_pred eEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 153 SASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 153 ~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
.++++..+ ++++.||..-+. .+|+. ..++|+.||+|+|..|.+
T Consensus 156 ~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 156 FVLDILVD-DGHVRGLVAMNM---MEGTL-------VQIRANAVVMATGGAGRV 198 (582)
T ss_pred EEEEEEEe-CCEEEEEEEEEc---CCCcE-------EEEECCEEEECCCCCcCC
Confidence 99999875 678888765210 12211 478999999999998875
No 121
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.06 E-value=4.5e-08 Score=104.15 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhh
Q psy14497 130 LSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLS 207 (561)
Q Consensus 130 r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~ 207 (561)
...+.+.|.+.+++.|++|+.+++|++|..+ ++++.+|++.+ |.++++|.||.|.|....+.
T Consensus 228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~---------------g~~~~ad~vV~a~~~~~~~~ 289 (493)
T TIGR02730 228 VGQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLAD---------------GEKIYAKRIVSNATRWDTFG 289 (493)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCC---------------CCEEEcCEEEECCChHHHHH
Confidence 3578889999999999999999999999875 56788888743 45799999999999876653
No 122
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.05 E-value=2e-09 Score=107.02 Aligned_cols=113 Identities=28% Similarity=0.419 Sum_probs=78.2
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
+||+|||||||||++|..|++. |++|+|||+.+ +|+.+... ..+.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~-~gg~~~~~-----~~~~----------------------- 45 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA------NLKTLIIEGME-PGGQLTTT-----TEVE----------------------- 45 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEeccC-CCcceeec-----cccc-----------------------
Confidence 6999999999999999999999 99999999876 44322100 0000
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
.++. ++ ..+...++...+.+.+++.|+++++ ++|+++..++ ..+.|.+.
T Consensus 46 -------~~~~--~~--------~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~~~v~~~----------- 94 (300)
T TIGR01292 46 -------NYPG--FP--------EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RPFKVKTG----------- 94 (300)
T ss_pred -------ccCC--CC--------CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC--CeeEEEeC-----------
Confidence 0010 00 0123346778888888889999998 8898887642 23345542
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++.++++|.||.|+|....
T Consensus 95 ----~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 95 ----DGKEYTAKAVIIATGASAR 113 (300)
T ss_pred ----CCCEEEeCEEEECCCCCcc
Confidence 2458999999999997654
No 123
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.05 E-value=3.5e-09 Score=113.40 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEec-CEEEEccCCCchhhHHH
Q psy14497 132 DLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYA-KYTLFAEGSRGHLSKQI 210 (561)
Q Consensus 132 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~a-d~vV~AdG~~S~~~~~l 210 (561)
.|...|.+.+++.||+|+++++++++..+ +++++||.... +|+ ...+.+ +.||+|+|..+.. .++
T Consensus 218 ~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~a~kaVILAtGGf~~n-~em 283 (564)
T PRK12845 218 ALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-----RGR-------EVTVTARRGVVLAAGGFDHD-MEM 283 (564)
T ss_pred HHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-----CCc-------EEEEEcCCEEEEecCCcccc-HHH
Confidence 45667888888899999999999999864 68899987632 121 124666 5899999999886 334
Q ss_pred HHHc
Q psy14497 211 IKKF 214 (561)
Q Consensus 211 ~~~~ 214 (561)
.+++
T Consensus 284 ~~~y 287 (564)
T PRK12845 284 RWKF 287 (564)
T ss_pred HHHh
Confidence 4333
No 124
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.05 E-value=7.6e-09 Score=108.88 Aligned_cols=80 Identities=14% Similarity=0.254 Sum_probs=56.8
Q ss_pred CcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14497 124 GNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 124 ~~~~i~r~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
.+..++...+.+.|.+.+++.| ++++++++|+++..++++. +.|.+.+. .+|+ +.+++|++||.|+|.
T Consensus 176 ~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~-~~v~~~~~---~~G~-------~~~i~A~~VVvaAGg 244 (494)
T PRK05257 176 IGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGS-WTVTVKDL---KTGE-------KRTVRAKFVFIGAGG 244 (494)
T ss_pred CceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCC-EEEEEEEc---CCCc-------eEEEEcCEEEECCCc
Confidence 3668999999999999998876 8999999999998754553 33443210 0111 126899999999998
Q ss_pred CchhhHHHHHHcCCC
Q psy14497 203 RGHLSKQIIKKFNLD 217 (561)
Q Consensus 203 ~S~~~~~l~~~~g~~ 217 (561)
+|. .+.+.+|+.
T Consensus 245 ~s~---~L~~~~Gi~ 256 (494)
T PRK05257 245 GAL---PLLQKSGIP 256 (494)
T ss_pred chH---HHHHHcCCC
Confidence 876 233346665
No 125
>PRK12839 hypothetical protein; Provisional
Probab=99.05 E-value=3.2e-09 Score=114.00 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=50.9
Q ss_pred eHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 129 SLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 129 ~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
....|...|.+.+++.|++|+.++.++++..++++++++|...+ .+|+. ..+.++.||+|+|..+.-
T Consensus 212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~----~~g~~-------~i~aak~VVLAtGGf~~n 278 (572)
T PRK12839 212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG----PDGAV-------TVEATRGVVLATGGFPND 278 (572)
T ss_pred cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe----CCCcE-------EEEeCCEEEEcCCCcccC
Confidence 45567788999999999999999999999876578899997632 12221 123458999999988873
No 126
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.04 E-value=1.8e-09 Score=116.17 Aligned_cols=170 Identities=16% Similarity=0.263 Sum_probs=97.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeC-----hhhHHhhccccc-cCCcc--
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIID-----PRSIFELFPKEK-LNKLF-- 91 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~-----~~~l~~l~~~~~-~~~~~-- 91 (561)
.++||+|||||+|||+||+.+++. .+|.+|+|+||....+++.. +++.+. ....+..+.+.. .+..+
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~----g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d 77 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEA----NPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCE 77 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCc
Confidence 468999999999999999999987 33689999999987766432 222211 011122221111 01000
Q ss_pred ----c--cccchhhhhhhcCCCCcccCCC----CCCceeecCC---cEEe---eHHHHHHHHHHHHHH-CCCEEEcCceE
Q psy14497 92 ----N--TPVIEERFLFLSSKKSYKIPSW----ILPICFKNHG---NYII---SLSDLVRWMGKKAEN-MGIDIFSGFSA 154 (561)
Q Consensus 92 ----~--~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~---~~~i---~r~~l~~~L~~~a~~-~Gv~i~~g~~v 154 (561)
. .....+.+.|+... ++.+... ........+. .+.. .-..+.+.|.+.+.+ .+|+++.++.+
T Consensus 78 ~~lv~~l~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v 156 (580)
T TIGR01176 78 QDVVEYFVAEAPKEMVQLEHW-GCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFV 156 (580)
T ss_pred HHHHHHHHHHhHHHHHHHHHc-CCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEE
Confidence 0 01122334444331 1111100 0000000000 1111 234688889988876 48999999999
Q ss_pred eEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 155 SEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 155 ~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
+++..+ ++++.||..-+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 157 ~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 157 TDLLVD-DGRVCGLVAIEM---AEGRL-------VTILADAVVLATGGAGRV 197 (580)
T ss_pred EEEEee-CCEEEEEEEEEc---CCCcE-------EEEecCEEEEcCCCCccc
Confidence 999875 678888865221 12221 468999999999998864
No 127
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=1.2e-09 Score=118.00 Aligned_cols=170 Identities=22% Similarity=0.344 Sum_probs=94.8
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-e-ecce---e---Ch-hhHHhhccccc-cCCc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-L-SGAI---I---DP-RSIFELFPKEK-LNKL 90 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~-~G~~---~---~~-~~l~~l~~~~~-~~~~ 90 (561)
.++||+|||||+|||+||+.+++. .+|.+|+|+||....+++. . .|++ + .+ ...+..+.... .+..
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~ 77 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRL----DPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDY 77 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHh----cCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999987 2358999999987765432 1 2221 1 00 01111110000 0000
Q ss_pred c------c--cccchhhhhhhcCCCCcccCCCC----CCceeecCC----cEEe--eHHHHHHHHHHHHHHCCCEEEcCc
Q psy14497 91 F------N--TPVIEERFLFLSSKKSYKIPSWI----LPICFKNHG----NYII--SLSDLVRWMGKKAENMGIDIFSGF 152 (561)
Q Consensus 91 ~------~--~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~~----~~~i--~r~~l~~~L~~~a~~~Gv~i~~g~ 152 (561)
+ . .......+.|+... ++.++... .......+. .+.. .-..+.+.|.+.+.+.||+++.++
T Consensus 78 l~d~~~v~~l~~~a~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t 156 (575)
T PRK05945 78 LADQDAVAILTQEAPDVIIDLEHL-GVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEW 156 (575)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCc
Confidence 0 0 00112333443321 11111000 000000000 0111 124688889998888999999999
Q ss_pred eEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 153 SASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 153 ~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
.|+++..+ ++++.||..-+. .+|+ ...+.|+.||+|+|..+.+
T Consensus 157 ~v~~L~~~-~g~v~Gv~~~~~---~~g~-------~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 157 YVMRLILE-DNQAKGVVMYHI---ADGR-------LEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EEEEEEEE-CCEEEEEEEEEc---CCCe-------EEEEECCEEEECCCCCcCC
Confidence 99999764 677888764210 1221 1368999999999998764
No 128
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=1.3e-09 Score=117.72 Aligned_cols=171 Identities=19% Similarity=0.234 Sum_probs=96.8
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCC---CcEEEEcCCCCCCCcee-ecce----eCh---hhHHhhccccc
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKE---IKICVLEKGSELGAHIL-SGAI----IDP---RSIFELFPKEK 86 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G---~~V~ViEk~~~~g~~~~-~G~~----~~~---~~l~~l~~~~~ 86 (561)
|+.+++||+|||||+|||+||+.+++. | .+|+|+||....++... +++. +.+ ...+..+.+..
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~------G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~ 74 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAER------SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTV 74 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHh------CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHH
Confidence 456789999999999999999999999 8 89999999987665432 2221 111 11111111110
Q ss_pred -cCCcc------cc--ccchhhhhhhcCCCCcccCCCC---C-CceeecCCc-EEe-----eHHHHHHHHHHHHHH-CCC
Q psy14497 87 -LNKLF------NT--PVIEERFLFLSSKKSYKIPSWI---L-PICFKNHGN-YII-----SLSDLVRWMGKKAEN-MGI 146 (561)
Q Consensus 87 -~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~---~-p~~~~~~~~-~~i-----~r~~l~~~L~~~a~~-~Gv 146 (561)
.+..+ .. ....+.+.|+... ++.+.... + ......+.. ... .-..+.+.|.+.+.+ .||
T Consensus 75 ~~g~~~~d~~lv~~~~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv 153 (577)
T PRK06069 75 KGSDFLADQDAVEVFVREAPEEIRFLDHW-GVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNI 153 (577)
T ss_pred HhhcccCCHHHHHHHHHHHHHHHHHHHHc-CCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCC
Confidence 00000 00 0112334454431 11111000 0 000000000 000 123577888888876 699
Q ss_pred EEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 147 DIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 147 ~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
+++.++.++++..+ ++++.||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 154 ~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 154 HFYDEHFVTSLIVE-NGVFKGVTAIDL---KRGEF-------KVFQAKAGIIATGGAGRL 202 (577)
T ss_pred EEEECCEEEEEEEE-CCEEEEEEEEEc---CCCeE-------EEEECCcEEEcCchhccc
Confidence 99999999999865 677888765221 12211 268999999999998754
No 129
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.4e-09 Score=104.86 Aligned_cols=114 Identities=31% Similarity=0.495 Sum_probs=76.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
+.+||+|||||||||+||+.+++. +++ ++|+|+. .+|+.... .. ....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~------~l~~~li~~~~-~~gg~~~~-----~~----~ven--------------- 50 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA------GLKVVLILEGG-EPGGQLTK-----TT----DVEN--------------- 50 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc------CCCcEEEEecC-CcCCcccc-----ce----eecC---------------
Confidence 579999999999999999999999 999 5555554 44421100 00 0000
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+|.+ + -.+.-..|.+.+.++++..|+++.. ..|.++....+ ...|.+.+
T Consensus 51 -----------ypg~--~--------~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~------- 99 (305)
T COG0492 51 -----------YPGF--P--------GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDK------- 99 (305)
T ss_pred -----------CCCC--c--------cCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECC-------
Confidence 1100 0 0134457888999999889999987 67777765422 45566643
Q ss_pred ceecccccCeEEecCEEEEccCCCch
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+ ++++|.||+|+|....
T Consensus 100 --------~-~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 100 --------G-TYEAKAVIIATGAGAR 116 (305)
T ss_pred --------C-eEEEeEEEECcCCccc
Confidence 4 4999999999997655
No 130
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=1.5e-09 Score=116.47 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=94.3
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC-CCCc-eeecceeC-----hhhHHhhccccc-cCC-
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE-LGAH-ILSGAIID-----PRSIFELFPKEK-LNK- 89 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~-~g~~-~~~G~~~~-----~~~l~~l~~~~~-~~~- 89 (561)
+..++||||||||.|||+||+.+ +. |.+|+|+||.+. .++. ..+++.+. ....+..+.++. .+.
T Consensus 4 ~~~~~DVlVVG~G~AGl~AAi~A-~~------G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~ 76 (543)
T PRK06263 4 EIMITDVLIIGSGGAGARAAIEA-ER------GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAY 76 (543)
T ss_pred ceeccCEEEECccHHHHHHHHHH-hc------CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 45779999999999999999999 88 999999999864 3332 22222221 112222221111 000
Q ss_pred -----cccc--ccchhhhhhhcCCCCcccCCCC---CCceeecCCcEE---------eeHHHHHHHHHHHHHHCCCEEEc
Q psy14497 90 -----LFNT--PVIEERFLFLSSKKSYKIPSWI---LPICFKNHGNYI---------ISLSDLVRWMGKKAENMGIDIFS 150 (561)
Q Consensus 90 -----~~~~--~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~---------i~r~~l~~~L~~~a~~~Gv~i~~ 150 (561)
.... ......+.|+... ++.+.... +.. ...++.. ..-..+...|.+.+++.||++++
T Consensus 77 ~~d~~lv~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~--~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~ 153 (543)
T PRK06263 77 LNDPKLVEILVKEAPKRLKDLEKF-GALFDRTEDGEIAQ--RPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILE 153 (543)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCcceeCCCCceee--cccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 0000 0112233444321 11111000 000 0000000 01246788888888889999999
Q ss_pred CceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 151 GFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 151 g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++.++++..+++++++||...+. .+|+. ..++|+.||+|+|..+.
T Consensus 154 ~t~v~~Li~~~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 154 EVMAIKLIVDENREVIGAIFLDL---RNGEI-------FPIYAKATILATGGAGQ 198 (543)
T ss_pred CeEeeeeEEeCCcEEEEEEEEEC---CCCcE-------EEEEcCcEEECCCCCCC
Confidence 99999998764445888765320 12221 36899999999998875
No 131
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=99.03 E-value=1.1e-10 Score=87.97 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=46.7
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEE-EccCCCccCCcccccCCCCCeeEEC
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQ-INAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~-~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
++|.++|+.| +.|+-+||.+++...++ + ... +||+.|.+||.|+.+||..||++..
T Consensus 31 v~d~~kCi~C------~~C~~yCPe~~i~~~~~--~--~~~~idYdyCKGCGICa~vCP~kaI~Mv~ 87 (91)
T COG1144 31 VVDEDKCINC------KLCWLYCPEPAILEEEG--G--YKVRIDYDYCKGCGICANVCPVKAIEMVR 87 (91)
T ss_pred EEcccccccC------ceeEEECCchheeeccC--C--ccceeEcccccCceechhhCChhheEeEe
Confidence 5688999994 56999999999877653 2 122 9999999999999999999999954
No 132
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.03 E-value=3.1e-09 Score=115.06 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=95.1
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecc--eeCh-----hhHHhhccccc-cCCc
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGA--IIDP-----RSIFELFPKEK-LNKL 90 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~--~~~~-----~~l~~l~~~~~-~~~~ 90 (561)
...++||||||||+|||+||+.+++. .||.+|+|+||.+..++...+++ .++. ...+..+.... ....
T Consensus 8 ~~~~~DVlVIG~G~AGl~AAi~Aae~----~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~ 83 (608)
T PRK06854 8 VEVDTDILIIGGGMAGCGAAFEAKEW----APDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMG 83 (608)
T ss_pred ceeEeCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccC
Confidence 44679999999999999999999885 34899999999876544322221 1111 01111111111 0000
Q ss_pred cc--------cccchhhhhhhcCCCCcccCC----CCCCceeecCCcEEeeHHHHHHHHHHHHHHCC-CEEEcCceEeEE
Q psy14497 91 FN--------TPVIEERFLFLSSKKSYKIPS----WILPICFKNHGNYIISLSDLVRWMGKKAENMG-IDIFSGFSASEI 157 (561)
Q Consensus 91 ~~--------~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~G-v~i~~g~~v~~i 157 (561)
+. .....+.+.|+...+ +.+.. ...+. ......+....+.+.|.+.+++.+ |++++++.|+++
T Consensus 84 ~~d~~lv~~~~~~s~~~i~~L~~~G-v~f~~~~~G~~~~~---g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~L 159 (608)
T PRK06854 84 IVREDLVYDIARHVDSVVHLFEEWG-LPIWKDENGKYVRR---GRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDL 159 (608)
T ss_pred CCCHHHHHHHHHhHHHHHHHHHHcC-CeeeecCCCCcccc---CCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEE
Confidence 00 001123344443311 11110 00000 000111344578888888888765 999999999999
Q ss_pred EEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 158 LYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 158 ~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..+ ++++++|..-+. .+|+ ...+.|+.||+|+|..+.
T Consensus 160 i~~-~g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 160 LVD-DNRIAGAVGFSV---RENK-------FYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEe-CCEEEEEEEEEc---cCCc-------EEEEECCEEEECCCchhh
Confidence 765 567778754210 1121 136899999999998764
No 133
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.03 E-value=1.9e-09 Score=111.17 Aligned_cols=148 Identities=24% Similarity=0.348 Sum_probs=89.8
Q ss_pred EEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecc-e---eChhhHHhhcccccc-----CCcccccc
Q psy14497 26 IIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGA-I---IDPRSIFELFPKEKL-----NKLFNTPV 95 (561)
Q Consensus 26 vIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~-~---~~~~~l~~l~~~~~~-----~~~~~~~~ 95 (561)
+|||||+|||++|+.|++. |++|+|+||.+.+|.++. +|. . .+.....+++..+.. ...+....
T Consensus 1 vIIGgG~aGl~aAi~aa~~------G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE------GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFS 74 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc------CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCC
Confidence 6999999999999999999 999999999998876642 231 1 111111111111110 00011111
Q ss_pred chhhhhhhcCCCCcccCCCCCCceeecCC-cE--EeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecc
Q psy14497 96 IEERFLFLSSKKSYKIPSWILPICFKNHG-NY--IISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNN 172 (561)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~--~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 172 (561)
..+.+.|+...+ ..+.. ...+ .| .-....+.+.|.+.+++.|++++++++|+++..+ ++ .+.|++.
T Consensus 75 ~~d~~~~~~~~G-v~~~~-------~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~- 143 (400)
T TIGR00275 75 NKDLIDFFESLG-LELKV-------EEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETS- 143 (400)
T ss_pred HHHHHHHHHHcC-CeeEE-------ecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEEC-
Confidence 223334443321 11110 0011 11 1135688899999999999999999999999754 22 3455542
Q ss_pred cccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 173 FGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 173 ~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+.++.+|.||.|+|..|.
T Consensus 144 ---------------~~~i~ad~VIlAtG~~s~ 161 (400)
T TIGR00275 144 ---------------GGEYEADKVILATGGLSY 161 (400)
T ss_pred ---------------CcEEEcCEEEECCCCccc
Confidence 247899999999998773
No 134
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.03 E-value=2.6e-09 Score=110.95 Aligned_cols=138 Identities=22% Similarity=0.329 Sum_probs=84.5
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccch
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIE 97 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~ 97 (561)
.+..+||+|||||++||++|++|.++ |++ ++||||+..+|+..... .++ +..+..+.
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~------g~~~~~i~Ek~~~~Gg~W~~~----------ry~----~l~~~~p~-- 62 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQA------GVPDFVIFEKRDDVGGTWRYN----------RYP----GLRLDSPK-- 62 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHc------CCCcEEEEEccCCcCCcchhc----------cCC----ceEECCch--
Confidence 45679999999999999999999999 998 99999999887642110 000 00000000
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCC--CEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMG--IDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~G--v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
....++...++. ...+ -....+...+.+.+++.+ .+|.+++.|..+..++++..+.|.+.+.+
T Consensus 63 ---------~~~~~~~~p~~~----~~~~-~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~- 127 (443)
T COG2072 63 ---------WLLGFPFLPFRW----DEAF-APFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG- 127 (443)
T ss_pred ---------heeccCCCccCC----cccC-CCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCC-
Confidence 001122111210 0010 111124555666666544 46777888877888777778888885421
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++++|.||.|+|..|.
T Consensus 128 ------------~~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 128 ------------TGELTADFVVVATGHLSE 145 (443)
T ss_pred ------------eeeEecCEEEEeecCCCC
Confidence 012679999999997443
No 135
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=4.9e-09 Score=113.20 Aligned_cols=168 Identities=16% Similarity=0.202 Sum_probs=94.2
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeC--------hhhHHhhccccc-cCCc-
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIID--------PRSIFELFPKEK-LNKL- 90 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~--------~~~l~~l~~~~~-~~~~- 90 (561)
++||||||+|+|||+||+.+++. |.+|+|+||.+..++.. .+++.+. ....+..+.+.. .+..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~ 76 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEA------GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFL 76 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHc------CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCc
Confidence 57999999999999999999999 99999999998765432 2222111 011111111111 0000
Q ss_pred -----ccc--ccchhhhhhhcCCCCcccCCCCC-CceeecCCcEEe---------eHHHHHHHHHHHHHHCC----CEEE
Q psy14497 91 -----FNT--PVIEERFLFLSSKKSYKIPSWIL-PICFKNHGNYII---------SLSDLVRWMGKKAENMG----IDIF 149 (561)
Q Consensus 91 -----~~~--~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~i---------~r~~l~~~L~~~a~~~G----v~i~ 149 (561)
... ......+.|+... ++.+....- .......++... .-..+.+.|.+.+.+.+ |+++
T Consensus 77 ~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~ 155 (589)
T PRK08641 77 ANQPPVKAMCEAAPGIIHLLDRM-GVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKY 155 (589)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEE
Confidence 000 0111233444321 111110000 000000011111 23457778888776533 8899
Q ss_pred cCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 150 SGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 150 ~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
.++.++++..+++++++||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 156 ~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 156 EGWEFLGAVLDDEGVCRGIVAQDL---FTMEI-------ESFPADAVIMATGGPGII 202 (589)
T ss_pred eeEEEEEEEECCCCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCCcCC
Confidence 999999998765788999987431 11221 357999999999998763
No 136
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.02 E-value=2.8e-09 Score=112.14 Aligned_cols=156 Identities=24% Similarity=0.307 Sum_probs=91.2
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeC-----hhhHHhhccccc-cCCc------
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIID-----PRSIFELFPKEK-LNKL------ 90 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~-----~~~l~~l~~~~~-~~~~------ 90 (561)
.||+|||||+|||++|+.+++. |.+|+|+||....+......+.+. ....+..+.++. .+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~------G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~ 75 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK------GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEV 75 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHH
Confidence 7999999999999999999999 999999999865432222211111 111111111111 0000
Q ss_pred ccc--ccchhhhhhhcCCCCcccCC------CCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCC
Q psy14497 91 FNT--PVIEERFLFLSSKKSYKIPS------WILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSK 162 (561)
Q Consensus 91 ~~~--~~~~~~~~~~~~~~~~~~~~------~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~ 162 (561)
... ....+.+.|+... ++.+.. ..+|...... ...-..+.+.|.+.+++.|++++.+ .++++..+ +
T Consensus 76 v~~~~~~~~~~i~~L~~~-Gv~f~~~~~~~g~~~~r~~~~~---~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~ 149 (466)
T PRK08401 76 VWNVISKSSEAYDFLTSL-GLEFEGNELEGGHSFPRVFTIK---NETGKHIIKILYKHARELGVNFIRG-FAEELAIK-N 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCcccCCCcCCccCCeEEECC---CCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEee-C
Confidence 000 0112334444331 111110 0111100000 0123468899999998899999876 78888654 6
Q ss_pred CCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 163 NNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 163 g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
+++++|.+. +..+.++.||+|+|..|.+
T Consensus 150 g~v~Gv~~~----------------g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 150 GKAYGVFLD----------------GELLKFDATVIATGGFSGL 177 (466)
T ss_pred CEEEEEEEC----------------CEEEEeCeEEECCCcCcCC
Confidence 777777762 3478999999999999885
No 137
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.02 E-value=5.3e-09 Score=112.72 Aligned_cols=62 Identities=21% Similarity=0.346 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecC-EEEEccCCCchh
Q psy14497 133 LVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAK-YTLFAEGSRGHL 206 (561)
Q Consensus 133 l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad-~vV~AdG~~S~~ 206 (561)
+...|.+.+++.|++|+++++++++..+++|+|++|.... +|+ ...++|+ -||+|+|..+.-
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~-------~~~i~a~~aVilAtGGf~~N 277 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGR-------TLRIGARRGVILATGGFDHD 277 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCc-------EEEEEeceeEEEecCcccCC
Confidence 4556777888889999999999999987678999997732 222 1368897 699999988874
No 138
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.01 E-value=2e-09 Score=111.95 Aligned_cols=164 Identities=20% Similarity=0.231 Sum_probs=92.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeC----hhhHHhhccccc-cCCc----
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIID----PRSIFELFPKEK-LNKL---- 90 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~----~~~l~~l~~~~~-~~~~---- 90 (561)
+++||||||+|.|||+||+.+ .. |.+|+|+||.+..++... +++.+. ....+..+.++. .+..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a-~~------G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~ 75 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNL-RK------DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNL 75 (433)
T ss_pred ccccEEEECchHHHHHHHHHh-cc------CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 579999999999999999997 47 999999999987765421 222121 111122222111 0000
Q ss_pred --ccc--ccchhhhhhhcCCCCcccCCC----CCCceeecCCcEEe-----eHHHHHHHHHHHHHH-CCCEEEcCceEeE
Q psy14497 91 --FNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNHGNYII-----SLSDLVRWMGKKAEN-MGIDIFSGFSASE 156 (561)
Q Consensus 91 --~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~~i-----~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~ 156 (561)
... ....+.+.|+...+ +.+... .+.....+.....+ .-..+.+.|.+.+.+ .||+|++++.+++
T Consensus 76 ~lv~~~~~~s~e~i~wL~~~G-v~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~ 154 (433)
T PRK06175 76 EAVKILANESIENINKLIDMG-LNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVD 154 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeee
Confidence 000 11223344543321 111100 00000000000111 124678888888875 5999999999999
Q ss_pred EEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 157 ILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 157 i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+..+ ++++++|...+ +++ ...+.|+.||+|+|..+.
T Consensus 155 Li~~-~~~v~Gv~~~~-----~g~-------~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 155 IIEN-DNTCIGAICLK-----DNK-------QINIYSKVTILATGGIGG 190 (433)
T ss_pred eEec-CCEEEEEEEEE-----CCc-------EEEEEcCeEEEccCcccc
Confidence 9765 56777865421 111 136899999999998664
No 139
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.01 E-value=3.8e-09 Score=114.24 Aligned_cols=165 Identities=22% Similarity=0.303 Sum_probs=92.9
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-e-ecce---eC---h-hhHHhhccccc-cCC----
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-L-SGAI---ID---P-RSIFELFPKEK-LNK---- 89 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~-~G~~---~~---~-~~l~~l~~~~~-~~~---- 89 (561)
||||||||+|||+||+.+++. |.+|+|+||.+..++.. . .|+. +. + ...+..+.+.. .+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~------G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d 74 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA------GLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLAD 74 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC------CCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCC
Confidence 899999999999999999999 99999999988655432 1 1211 11 1 01111111100 000
Q ss_pred --cccc--ccchhhhhhhcCCCCcccCCC----CCCceeecCC----cEEe--eHHHHHHHHHHHHHHCCCEEEcCceEe
Q psy14497 90 --LFNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNHG----NYII--SLSDLVRWMGKKAENMGIDIFSGFSAS 155 (561)
Q Consensus 90 --~~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~----~~~i--~r~~l~~~L~~~a~~~Gv~i~~g~~v~ 155 (561)
.... ....+.+.|+... ++.+... ........+. .+.. .-..+...|.+.+.+.|+++++++.++
T Consensus 75 ~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~ 153 (566)
T TIGR01812 75 QDAVEYMCQEAPKAILELEHW-GVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFAL 153 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEE
Confidence 0000 0112334444321 1111000 0000000000 0111 123678888888888899999999999
Q ss_pred EEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 156 EILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 156 ~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
++..+ ++++.||...+. .+|+. ..++|+.||+|+|..+.+
T Consensus 154 ~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 154 DLIHD-DGRVRGVVAYDL---KTGEI-------VFFRAKAVVLATGGYGRI 193 (566)
T ss_pred EEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCeEEECCCcccCC
Confidence 99875 678888765321 12211 368999999999998864
No 140
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.01 E-value=1.2e-08 Score=106.60 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=55.8
Q ss_pred CcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14497 124 GNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 124 ~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
.+..++...+.+.|.+.+.+ .|++++++++|+++..++++. |.|.+.+. .+|+ ..+++||+||.|.|.
T Consensus 177 ~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v~v~~t---~~g~-------~~~i~Ad~VV~AAGa 245 (497)
T PRK13339 177 EGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEVTVKDR---NTGE-------KREQVADYVFIGAGG 245 (497)
T ss_pred CceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEEEEEec---CCCc-------eEEEEcCEEEECCCc
Confidence 35678999999999999965 589999999999997653433 33432100 0010 126899999999999
Q ss_pred CchhhHHHHHHcCCCC
Q psy14497 203 RGHLSKQIIKKFNLDN 218 (561)
Q Consensus 203 ~S~~~~~l~~~~g~~~ 218 (561)
+|. .+.+.+|+..
T Consensus 246 wS~---~La~~~Gi~~ 258 (497)
T PRK13339 246 GAI---PLLQKSGIPE 258 (497)
T ss_pred chH---HHHHHcCCCc
Confidence 885 3344467654
No 141
>PLN02815 L-aspartate oxidase
Probab=99.01 E-value=3.6e-09 Score=113.59 Aligned_cols=171 Identities=18% Similarity=0.243 Sum_probs=96.6
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eeccee----Ch-hhHHhhccccc-cCCc
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAII----DP-RSIFELFPKEK-LNKL 90 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~----~~-~~l~~l~~~~~-~~~~ 90 (561)
.++.++||||||+|.|||++|+.+++. | +|+|+||.+..++.. .+++.+ .+ ...+..+.++. .+..
T Consensus 25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~------G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~ 97 (594)
T PLN02815 25 ESTKYFDFLVIGSGIAGLRYALEVAEY------G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAF 97 (594)
T ss_pred CcccccCEEEECccHHHHHHHHHHhhC------C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccC
Confidence 345679999999999999999999999 9 999999998876532 222211 11 11122222211 0000
Q ss_pred ------ccc--ccchhhhhhhcCCCCcccCCCC---C-CceeecCC---cEE---eeHHHHHHHHHHHHHHC-CCEEEcC
Q psy14497 91 ------FNT--PVIEERFLFLSSKKSYKIPSWI---L-PICFKNHG---NYI---ISLSDLVRWMGKKAENM-GIDIFSG 151 (561)
Q Consensus 91 ------~~~--~~~~~~~~~~~~~~~~~~~~~~---~-p~~~~~~~---~~~---i~r~~l~~~L~~~a~~~-Gv~i~~g 151 (561)
... ....+.+.|+...+ +.+.... + ......+. .+. ..-..+.+.|.+.+.+. ||+++.+
T Consensus 98 ~~d~~lv~~~~~~s~e~i~~L~~~G-v~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~ 176 (594)
T PLN02815 98 LCDEETVRVVCTEGPERVKELIAMG-ASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEH 176 (594)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhC-CeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 000 11123344443311 1111000 0 00000000 000 12246788888888764 8999999
Q ss_pred ceEeEEEEcCCC-C--EEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 152 FSASEILYDSKN-N--VCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 152 ~~v~~i~~~~~g-~--v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
+.++++..++++ . ++||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 177 ~~~~~Li~~~~g~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 177 HFAIDLLTSQDGGSIVCHGADVLDT---RTGEV-------VRFISKVTLLASGGAGHI 224 (594)
T ss_pred eEhheeeeecCCCccEEEEEEEEEc---CCCeE-------EEEEeceEEEcCCcceee
Confidence 999999875444 2 788876321 12321 367999999999988753
No 142
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=3.6e-09 Score=114.93 Aligned_cols=169 Identities=22% Similarity=0.323 Sum_probs=94.8
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc-eee-cce---eC----hhhHHhhccccc-cC
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH-ILS-GAI---ID----PRSIFELFPKEK-LN 88 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~-~~~-G~~---~~----~~~l~~l~~~~~-~~ 88 (561)
+.+++||||||||+|||+||+.+++. |.+|+|+||.+..++. ..+ |+. +. ....+..+.+.. .+
T Consensus 5 ~~~~~DVvVIG~G~AGl~AAl~Aae~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g 78 (626)
T PRK07803 5 ERHSYDVVVIGAGGAGLRAAIEARER------GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGG 78 (626)
T ss_pred cceeecEEEECcCHHHHHHHHHHHHC------CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999999 9999999999765442 112 211 11 011111111111 00
Q ss_pred Cccc--------cccchhhhhhhcCCCCcccCCC---CCC-ceeecCC-cEEe-----eHHHHHHHHHHHHHHC------
Q psy14497 89 KLFN--------TPVIEERFLFLSSKKSYKIPSW---ILP-ICFKNHG-NYII-----SLSDLVRWMGKKAENM------ 144 (561)
Q Consensus 89 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~---~~p-~~~~~~~-~~~i-----~r~~l~~~L~~~a~~~------ 144 (561)
..+. .......+.|+... ++.+... .+. .....+. .... .-..+.+.|.+.+.+.
T Consensus 79 ~~l~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~ 157 (626)
T PRK07803 79 KFLNNWRMAELHAKEAPDRVWELETY-GALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHA 157 (626)
T ss_pred ccCCcHHHHHHHHHHhHHHHHHHHHC-CCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccc
Confidence 0000 01122334444331 1111100 000 0000000 0111 1246788888888765
Q ss_pred --C-----CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 145 --G-----IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 145 --G-----v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
| |+++.++.|+++..+ ++++.||...+. .+|+. ..+.|+.||+|+|..+.
T Consensus 158 ~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 158 ELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWR---ESGRF-------VLFEAPAVVLATGGIGK 214 (626)
T ss_pred cccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEcCeEEECCCcccC
Confidence 6 999999999999865 677888765221 12211 36899999999998654
No 143
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.00 E-value=7.8e-09 Score=111.16 Aligned_cols=180 Identities=17% Similarity=0.129 Sum_probs=96.9
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC--CCCCce-eecceeC-h--h---------hHHhhccc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS--ELGAHI-LSGAIID-P--R---------SIFELFPK 84 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~--~~g~~~-~~G~~~~-~--~---------~l~~l~~~ 84 (561)
++++||||||+|.|||++|+.+++. |.+|+||||.+ ..|+.. .+++.+. + . ..+..+..
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~------G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d 75 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADA------GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQD 75 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHH
Confidence 3679999999999999999999999 99999999998 556643 2322211 1 0 01111111
Q ss_pred cc-cC-----Ccc------ccc---cchhhhhhhcCCCCcccCC-CC-------CCce-eecCCcEEe---eHHHHHHHH
Q psy14497 85 EK-LN-----KLF------NTP---VIEERFLFLSSKKSYKIPS-WI-------LPIC-FKNHGNYII---SLSDLVRWM 137 (561)
Q Consensus 85 ~~-~~-----~~~------~~~---~~~~~~~~~~~~~~~~~~~-~~-------~p~~-~~~~~~~~i---~r~~l~~~L 137 (561)
+. .. ..+ ... ...+.+.|+.+.+ +.+.. .. .+.. ......+.. .-..+.+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~G-v~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l 154 (549)
T PRK12834 76 WLGSAGFDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLG-LRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPF 154 (549)
T ss_pred HHhccCCCCccccchHHHHHHHHHhCCHHHHHHHHHcC-CeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHH
Confidence 11 00 000 000 1234556665422 22110 00 0000 000000000 113466677
Q ss_pred HHHHH----HCCCEEEcCceEeEEEEcCCCCEEEEEeccc--ccccCCceec-ccccCeEEecCEEEEccCCCchhh
Q psy14497 138 GKKAE----NMGIDIFSGFSASEILYDSKNNVCGIATNNF--GINKEGIIKK-NFQLGMELYAKYTLFAEGSRGHLS 207 (561)
Q Consensus 138 ~~~a~----~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~--~~~~~g~~~~-~f~~g~~i~ad~vV~AdG~~S~~~ 207 (561)
.+.++ +.||+++++++++++..+ +++|+||...+. +...+|+... .-..-..+.|+-||+|+|..+...
T Consensus 155 ~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~ 230 (549)
T PRK12834 155 ERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNH 230 (549)
T ss_pred HHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCH
Confidence 66654 236999999999999875 688999985211 0000000000 000013689999999999999863
No 144
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.00 E-value=2.5e-09 Score=112.37 Aligned_cols=147 Identities=20% Similarity=0.324 Sum_probs=87.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee----cceeChhhHHhhccccccCCccccccch-
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS----GAIIDPRSIFELFPKEKLNKLFNTPVIE- 97 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~----G~~~~~~~l~~l~~~~~~~~~~~~~~~~- 97 (561)
|||+|||||+||+.+|..|++. |.+|+|+|+.....+...+ |+. ....+.+-+..+ +.......+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~------G~~v~Lie~~~~~~g~~~c~ps~gG~-a~g~l~rEidaL--GG~~~~~~d~~ 71 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM------GAKTLLLTLNLDTIGKCSCNPAIGGP-AKGILVKEIDAL--GGLMGKAADKA 71 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCEEEEecccccccCCCcccccccc-ccchhhhhhhcc--cchHHHHHHhh
Confidence 6999999999999999999999 9999999987543222111 110 001111111111 0000000000
Q ss_pred -hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEeccccc
Q psy14497 98 -ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNNFGI 175 (561)
Q Consensus 98 -~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~ 175 (561)
.++..+.... -|. . ......+++..+.+.|.+.+++. |++++.+ .|+++..++++.+.+|.+.+
T Consensus 72 ~i~~r~ln~sk--------gpA-V-~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~--- 137 (617)
T TIGR00136 72 GLQFRVLNSSK--------GPA-V-RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD--- 137 (617)
T ss_pred ceeheecccCC--------CCc-c-cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC---
Confidence 0111111100 010 0 00124678888999999988886 7888755 67777654467788888843
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCc
Q psy14497 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~S 204 (561)
|..++|+.||+|+|.+.
T Consensus 138 ------------G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 138 ------------GLKFRAKAVIITTGTFL 154 (617)
T ss_pred ------------CCEEECCEEEEccCccc
Confidence 45799999999999985
No 145
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.99 E-value=1e-08 Score=109.21 Aligned_cols=41 Identities=22% Similarity=0.475 Sum_probs=37.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+.++||||||+| |||++|+.+++. |.+|+||||.+..|+..
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~------G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAARE------GLSVALVEATDKFGGTT 45 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHC------CCcEEEEecCCCCCcce
Confidence 458999999999 999999999999 99999999998876654
No 146
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.98 E-value=7.2e-09 Score=110.63 Aligned_cols=115 Identities=25% Similarity=0.373 Sum_probs=81.9
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...+||+|||||||||++|+.|++. |++|+|+|+. +|+..... .. +.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~------G~~v~li~~~--~GG~~~~~-----~~-------~~------------- 255 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK------GIRTGIVAER--FGGQVLDT-----MG-------IE------------- 255 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecC--CCCeeecc-----Cc-------cc-------------
Confidence 4469999999999999999999999 9999999864 55432100 00 00
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
.++. ++ .....++.+.|.+.+.+.|++++.+++|+++...+ ..+.|.+.
T Consensus 256 ----------~~~~--~~---------~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~~~-------- 304 (517)
T PRK15317 256 ----------NFIS--VP---------ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA--GLIEVELA-------- 304 (517)
T ss_pred ----------ccCC--CC---------CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEC--------
Confidence 0000 00 12345788899999999999999999999997643 23445542
Q ss_pred ceecccccCeEEecCEEEEccCCCch
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+|.++++|.||+|+|.++.
T Consensus 305 -------~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 305 -------NGAVLKAKTVILATGARWR 323 (517)
T ss_pred -------CCCEEEcCEEEECCCCCcC
Confidence 2457999999999998654
No 147
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.98 E-value=7.9e-09 Score=111.62 Aligned_cols=64 Identities=30% Similarity=0.360 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEec-CEEEEccCCCchh
Q psy14497 130 LSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYA-KYTLFAEGSRGHL 206 (561)
Q Consensus 130 r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~a-d~vV~AdG~~S~~ 206 (561)
-..|.+.|.+.+++.|++++++++|+++..+ ++++++|.+.+. ++ ..++++ +.||.|+|..+.-
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~----~~--------~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETP----GG--------LQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEEC----Cc--------EEEEEeCCEEEEcCCCcccC
Confidence 3457788999999999999999999999875 678888876321 11 125889 9999999999873
No 148
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.97 E-value=3.3e-09 Score=112.42 Aligned_cols=164 Identities=22% Similarity=0.223 Sum_probs=94.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-ee-cce---eCh-hhHHhhccccc-cCCcc---
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LS-GAI---IDP-RSIFELFPKEK-LNKLF--- 91 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~-G~~---~~~-~~l~~l~~~~~-~~~~~--- 91 (561)
++||+|||||+|||++|+.+++. |. |+|+||.+..++.. .+ |++ ..+ ...+..+.++. .+..+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~------G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~ 74 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ------GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDR 74 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC------CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCH
Confidence 57999999999999999999999 97 99999997655432 22 211 111 11111111111 00000
Q ss_pred ---cc--ccchhhhhhhcCCCCcccCC-----CCCCceeecCC--cEEe---eHHHHHHHHHHHHHH-CCCEEEcCceEe
Q psy14497 92 ---NT--PVIEERFLFLSSKKSYKIPS-----WILPICFKNHG--NYII---SLSDLVRWMGKKAEN-MGIDIFSGFSAS 155 (561)
Q Consensus 92 ---~~--~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~--~~~i---~r~~l~~~L~~~a~~-~Gv~i~~g~~v~ 155 (561)
.. ....+.+.|+... ++.+.. +.+........ .+.. .-..+.+.|.+.+.+ .||++++++.|+
T Consensus 75 ~~v~~~~~~~~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~ 153 (488)
T TIGR00551 75 EAVEFVVSDARSAVQWLVDQ-GVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENAL 153 (488)
T ss_pred HHHHHHHHhHHHHHHHHHHc-CCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEee
Confidence 00 0112334444331 111110 00000000000 1111 235788999999987 699999999999
Q ss_pred EEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 156 EILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 156 ~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
++..+ ++.+.+|.+.+. +. ...++++.||+|+|..|.+
T Consensus 154 ~l~~~-~g~v~Gv~~~~~-----~~-------~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 154 DLLIE-TGRVVGVWVWNR-----ET-------VETCHADAVVLATGGAGKL 191 (488)
T ss_pred eeecc-CCEEEEEEEEEC-----Cc-------EEEEEcCEEEECCCcccCC
Confidence 99864 567777776431 11 1368999999999999875
No 149
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.96 E-value=8.4e-09 Score=111.43 Aligned_cols=63 Identities=27% Similarity=0.360 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecC-EEEEccCCCchh
Q psy14497 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAK-YTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad-~vV~AdG~~S~~ 206 (561)
..+.+.|.+.+++.|+++++++.|+++..+ ++++++|.+.+. +++ ..+.++ .||.|+|..+.-
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~----~~~--------~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDA----GGE--------RRITARRGVVLACGGFSHD 277 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcC----Cce--------EEEEeCCEEEEcCCCccch
Confidence 346777888888899999999999999875 678888877431 111 257775 899999988863
No 150
>PRK07233 hypothetical protein; Provisional
Probab=98.96 E-value=2.8e-07 Score=96.69 Aligned_cols=38 Identities=39% Similarity=0.632 Sum_probs=36.1
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+|+|||||+|||++|+.|++. |++|+|+|+.+.+|+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~------G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR------GHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCCce
Confidence 699999999999999999999 99999999999998865
No 151
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.95 E-value=2.8e-07 Score=98.53 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
..+.+.|.+.+++.|++|+.+++|+++..+ ++++++|++.+ |.+++||.||.|.+....+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~---------------g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLAD---------------GERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECC---------------CCEEECCEEEECCcHHHHH
Confidence 678899999999999999999999999875 56677887743 4578999999998876554
No 152
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.94 E-value=1.5e-08 Score=109.45 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEec-CEEEEccCCCchhhHHH
Q psy14497 132 DLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYA-KYTLFAEGSRGHLSKQI 210 (561)
Q Consensus 132 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~a-d~vV~AdG~~S~~~~~l 210 (561)
.|...|.+.+++.|++++.++.++++..+ ++++.+|.+.. +|+ ...+.+ +.||+|+|..+.. .++
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~A~~~VVlAtGg~~~n-~em 287 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQ-----GGV-------RRRIRARGGVVLATGGFNRH-PQL 287 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEec-----CCe-------EEEEEccceEEECCCCcccC-HHH
Confidence 57788889999999999999999999864 67888887742 121 125776 7899999999986 344
Q ss_pred HHHc
Q psy14497 211 IKKF 214 (561)
Q Consensus 211 ~~~~ 214 (561)
.+++
T Consensus 288 ~~~~ 291 (578)
T PRK12843 288 RREL 291 (578)
T ss_pred HHHh
Confidence 4444
No 153
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=6.6e-09 Score=112.28 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCC---CCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSK---NNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~---g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
..+.+.|.+.+.+.||+++.++.|+++..+++ +++.||...+. .+|+. ..++|+.||+|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGEI-------HVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCeE-------EEEEeCeEEECCCCCccc
Confidence 46888899999889999999999999986543 78888875220 12221 368999999999998754
No 154
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=98.93 E-value=3.6e-10 Score=99.30 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=47.4
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecC---c---eeEEEEccCCCccCCcccccCCCCCeeE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN---K---IQHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~---~---~~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
.+.+.|+.| +.|..+||++||+++..+. | ...+.||+.+||.||.|..+||++||..
T Consensus 52 l~~~~CIgC------~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~ 114 (172)
T COG1143 52 LDRDKCIGC------GLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVL 114 (172)
T ss_pred ccccCCcch------hHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcC
Confidence 356779995 5699999999999976532 2 2578899999999999999999999975
No 155
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.93 E-value=5.1e-09 Score=114.06 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
..+...|.+.+.+.||+++.++.++++..+ +++++||...+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~G~~-------~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCL---ITGEL-------RAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCcccCC
Confidence 356677888888899999999999999875 678888876421 22321 357899999999987764
No 156
>PLN02612 phytoene desaturase
Probab=98.93 E-value=6.4e-07 Score=96.43 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14497 132 DLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 132 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
.+.+.|.+.+++.|++|+++++|++|..++++.+++|.+.+ |+++++|.||.|...
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---------------G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---------------GSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---------------CcEEECCEEEECCCH
Confidence 46677777777789999999999999887677677777632 567999999999864
No 157
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.92 E-value=5.1e-08 Score=97.61 Aligned_cols=82 Identities=15% Similarity=0.276 Sum_probs=61.9
Q ss_pred cEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14497 125 NYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 125 ~~~i~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
+.-|+-+.|.+.|.+.+.+. |++++++++|+++...+|+. |.|.+.+. .+|+ ..+++|++|++..|..
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~---~~~~-------~~~v~a~FVfvGAGG~ 243 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDL---KTGE-------KREVRAKFVFVGAGGG 243 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEec---CCCC-------eEEEECCEEEECCchH
Confidence 55688899999999999886 99999999999999875553 66666431 2222 2589999999999998
Q ss_pred chhhHHHHHHcCCCCCC
Q psy14497 204 GHLSKQIIKKFNLDNKK 220 (561)
Q Consensus 204 S~~~~~l~~~~g~~~~~ 220 (561)
|.. |+.+.|+++..
T Consensus 244 aL~---LLqksgi~e~~ 257 (488)
T PF06039_consen 244 ALP---LLQKSGIPEGK 257 (488)
T ss_pred hHH---HHHHcCChhhc
Confidence 873 44457776543
No 158
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.91 E-value=2e-08 Score=104.97 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=42.7
Q ss_pred CCCCCCCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 13 NKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 13 ~~~~~~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
....++.....+|+|||||+|||++|+.|++. .+.||.+|+|||+.+.+|++.
T Consensus 13 ~~~~~~~~~~~~a~IIGaGiAGLAAA~~L~~d--g~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 13 RPRKPEGVDNKKAYIIGSGLASLAAAVFLIRD--GQMPGENITILEELDVPGGSL 65 (576)
T ss_pred cCCCCCCCCCCeEEEECCCHHHHHHHHHHHHc--cCCCCCcEEEEeCCCCCCCCc
Confidence 33334555568999999999999999999985 123578999999999998875
No 159
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.91 E-value=1.7e-08 Score=108.29 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecC-EEEEccCCCchh
Q psy14497 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAK-YTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad-~vV~AdG~~S~~ 206 (561)
..|.+.|.+.+++.|++++++++|+++..+ ++++++|.... +|+ ...++++ .||+|+|..+.-
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-----~g~-------~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-----DGR-------EVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-----CCe-------EEEEEecceEEEecCCccCC
Confidence 356778888898999999999999999875 68899987732 222 1357884 799999988874
No 160
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.90 E-value=6.6e-09 Score=109.02 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=40.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhH
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l 78 (561)
+|||+||||||||+++|+.|+++ |++|+|+|+. .+|+....-+.+..+.+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~-~~GG~c~~~gciPsk~l 51 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH------GAKVAIAEEP-RVGGTCVIRGCVPKKLM 51 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCcEEEEecC-ccCceeecCCcCchHHH
Confidence 69999999999999999999999 9999999984 57776554444444433
No 161
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.90 E-value=6.1e-10 Score=96.27 Aligned_cols=54 Identities=26% Similarity=0.478 Sum_probs=46.3
Q ss_pred CCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14497 488 KIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 488 ~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
-.|..|+ +.||.++||+++|+.++ ..+++|+++||+||+|..+||+++|++..-
T Consensus 51 v~C~qCe----daPC~~vCP~~AI~~~~-----~~v~V~~ekCiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 51 VVCHHCE----DAPCAEVCPVGAITRDD-----GAVQVDEEKCIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred CcCCCCC----CcchhhhCchhheeecC-----CceEEchhhccCcchhhhcCCcceEEEEee
Confidence 4566655 79999999999998763 379999999999999999999999987543
No 162
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.90 E-value=1.9e-08 Score=108.11 Aligned_cols=112 Identities=25% Similarity=0.458 Sum_probs=76.7
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.|||+|||||||||++|+.|++. |++|+|||+. ..|+.... ...+.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~------g~~V~liE~~-~~GG~~~~-----~~~i~---------------------- 49 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA------KLDTLIIEKD-DFGGQITI-----TSEVV---------------------- 49 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecC-CCCceEEe-----ccccc----------------------
Confidence 59999999999999999999999 9999999986 44442210 00000
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
..+. .-.+....+.+.+.+.+.+.|++++ .+.|+++..+ +....|.+.+
T Consensus 50 --------~~pg-----------~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~--~~~~~V~~~~--------- 98 (555)
T TIGR03143 50 --------NYPG-----------ILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFD--GDIKTIKTAR--------- 98 (555)
T ss_pred --------cCCC-----------CcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEec--CCEEEEEecC---------
Confidence 0010 0013345777888888888899985 6678887653 3334455421
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.++.++.||+|+|++..
T Consensus 99 -------g~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 99 -------GDYKTLAVLIATGASPR 115 (555)
T ss_pred -------CEEEEeEEEECCCCccC
Confidence 25889999999998754
No 163
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.89 E-value=1.1e-08 Score=109.05 Aligned_cols=114 Identities=25% Similarity=0.386 Sum_probs=79.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...+||+|||||||||++|+.|++. |++|+|+|. .+|+... +.. .+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~------G~~v~li~~--~~GG~~~-----~~~-------~~~------------- 256 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK------GLRTAMVAE--RIGGQVK-----DTV-------GIE------------- 256 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEec--CCCCccc-----cCc-------Ccc-------------
Confidence 4469999999999999999999999 999999975 2444221 000 000
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
.+.. .+ .....++.+.+.+.+.+.|++++.+++|+++..+++ .+.|.+.
T Consensus 257 ----------~~~~--~~---------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~--~~~v~~~-------- 305 (515)
T TIGR03140 257 ----------NLIS--VP---------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDG--LIVVTLE-------- 305 (515)
T ss_pred ----------cccc--cC---------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCC--eEEEEEC--------
Confidence 0000 00 023456788888888888999999999999875422 2344442
Q ss_pred ceecccccCeEEecCEEEEccCCCc
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S 204 (561)
+|.++++|.||+|+|.+.
T Consensus 306 -------~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 306 -------SGEVLKAKSVIVATGARW 323 (515)
T ss_pred -------CCCEEEeCEEEECCCCCc
Confidence 245799999999999764
No 164
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.89 E-value=1.8e-08 Score=106.40 Aligned_cols=41 Identities=51% Similarity=0.895 Sum_probs=36.7
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
.+|||+||||||||+++|..|+++ |++|+|+|+.+ .|+...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~------G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL------GLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC------CCcEEEEeccc-ccccee
Confidence 469999999999999999999999 99999999877 666543
No 165
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.89 E-value=4.8e-09 Score=118.05 Aligned_cols=41 Identities=32% Similarity=0.489 Sum_probs=37.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
...+|+|||||||||++|+.|++. |++|+|||+.+.+|+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~------G~~VtVfE~~~~~GG~l 345 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE------GFPVTVFEAFHDLGGVL 345 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCCCCceE
Confidence 468999999999999999999999 99999999998887643
No 166
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.87 E-value=1.7e-08 Score=108.03 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=93.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-ee-ccee---Ch-hhHHhhccccc-cCCc--
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LS-GAII---DP-RSIFELFPKEK-LNKL-- 90 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~-G~~~---~~-~~l~~l~~~~~-~~~~-- 90 (561)
+.++||||||+|.|||+||+.++ . |.+|+|+||.+..++.. .+ |++. .+ ...+..+.++. .+..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~------G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~ 79 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-S------HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLC 79 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-c------CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCC
Confidence 45799999999999999999984 6 89999999998766542 22 2221 11 11111221111 0000
Q ss_pred ----ccc--ccchhhhhhhcCCCCcccCCC----CC-Cceee-cCCcEEe---eHHHHHHHHHHHHHH-CCCEEEcCceE
Q psy14497 91 ----FNT--PVIEERFLFLSSKKSYKIPSW----IL-PICFK-NHGNYII---SLSDLVRWMGKKAEN-MGIDIFSGFSA 154 (561)
Q Consensus 91 ----~~~--~~~~~~~~~~~~~~~~~~~~~----~~-p~~~~-~~~~~~i---~r~~l~~~L~~~a~~-~Gv~i~~g~~v 154 (561)
... ....+.+.|+... ++.+... .. +.... ....+.. .-..+...|.+.+.+ .||+++.++.+
T Consensus 80 d~~lv~~~~~~s~~~i~wL~~~-Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v 158 (553)
T PRK07395 80 DPEAVRFLVEQAPEAIASLVEM-GVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALA 158 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-CCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcCh
Confidence 000 0112334444321 1111100 00 00000 0001111 124677888888865 59999999999
Q ss_pred eEEEEcC-CCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 155 SEILYDS-KNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 155 ~~i~~~~-~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+++..++ +++++||.+.+ +|+. ..+.|+.||+|+|..+.
T Consensus 159 ~~Li~~~~~g~v~Gv~~~~-----~g~~-------~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 159 LSLWLEPETGRCQGISLLY-----QGQI-------TWLRAGAVILATGGGGQ 198 (553)
T ss_pred hhheecCCCCEEEEEEEEE-----CCeE-------EEEEcCEEEEcCCCCcc
Confidence 9998753 37888887632 2221 25799999999998654
No 167
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.85 E-value=2.5e-08 Score=107.85 Aligned_cols=165 Identities=19% Similarity=0.218 Sum_probs=89.4
Q ss_pred EEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCC-C-ceee-cce---eC----hhhHHhhccccc-cCCc---
Q psy14497 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG-A-HILS-GAI---ID----PRSIFELFPKEK-LNKL--- 90 (561)
Q Consensus 25 VvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g-~-~~~~-G~~---~~----~~~l~~l~~~~~-~~~~--- 90 (561)
|||||||+|||+||+.+++. |.+|+|+||.+.++ + ...+ |++ .+ ....+..+.++. .+..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~------G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d 74 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL------GYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRAR 74 (603)
T ss_pred CEEECccHHHHHHHHHHHHc------CCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCC
Confidence 79999999999999999999 99999999988442 2 2222 211 11 011111111111 0000
Q ss_pred ---ccccc--chhhhhhhcCCCCcccCCC----CCCceeecCC---cEE---eeHHHHHHHHHHHHHH----CCCEEEcC
Q psy14497 91 ---FNTPV--IEERFLFLSSKKSYKIPSW----ILPICFKNHG---NYI---ISLSDLVRWMGKKAEN----MGIDIFSG 151 (561)
Q Consensus 91 ---~~~~~--~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~---~~~---i~r~~l~~~L~~~a~~----~Gv~i~~g 151 (561)
..... ..+.+.|+...+ +.+... ........+. .+. -.-..+...|.+.+.+ .||+++++
T Consensus 75 ~~lv~~l~~~s~~~i~~L~~~G-v~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~ 153 (603)
T TIGR01811 75 ESPVKRLAVASPEIIDLMDAMG-VPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEG 153 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeC
Confidence 01111 223444544321 111100 0000000000 000 0123455556555543 48999999
Q ss_pred ceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 152 FSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 152 ~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
+.++++..+++++++||.+.+. .+|+. ..+.|+.||+|+|..+.+
T Consensus 154 t~v~~Li~dd~grV~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 154 WEMLDIIVVDGNRARGIIARNL---VTGEI-------ETHSADAVILATGGYGNV 198 (603)
T ss_pred cEEEEEEEcCCCEEEEEEEEEC---CCCcE-------EEEEcCEEEECCCCCcCc
Confidence 9999998765678999887431 12221 368999999999987653
No 168
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.84 E-value=3.2e-08 Score=104.51 Aligned_cols=52 Identities=25% Similarity=0.560 Sum_probs=41.6
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
+.+|||+||||||||+++|+.|++. |++|+|+|+.+.+|+....-+.+....
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~------G~~v~liE~~~~~GG~~~~~gcipsk~ 54 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKL------GKRVAVIERYRNVGGGCTHTGTIPSKA 54 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC------CCEEEEEeccccccccccccCCCCHHH
Confidence 3469999999999999999999999 999999999877777543333333333
No 169
>COG1146 Ferredoxin [Energy production and conversion]
Probab=98.84 E-value=2.6e-09 Score=79.84 Aligned_cols=62 Identities=21% Similarity=0.396 Sum_probs=50.7
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCCC
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPEG 552 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g 552 (561)
++|++.|.. ++.|+.+||.+++.+.++. ++..+.++.+.|++||.|...||.+||.+.....
T Consensus 4 ~Id~~~C~~------c~~C~~~CP~~~~~~~~~~-~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~~~~ 65 (68)
T COG1146 4 VIDYDKCIG------CGICVEVCPAGVFDLGEDE-GGKPVVARPEECIDCGLCELACPVGAIKVDILRP 65 (68)
T ss_pred EECchhcCC------CChheeccChhhEEecccc-CcceeEeccccCccchhhhhhCCcceEEEecccc
Confidence 357888887 4679999999999987533 2357999999999999999999999998655443
No 170
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.83 E-value=2.3e-08 Score=107.45 Aligned_cols=165 Identities=18% Similarity=0.221 Sum_probs=90.0
Q ss_pred cEEEECchhHHHHHHHHHH----hccccCCCCCcEEEEcCCCCCCCceeecce--eChh--------hHHhhccccc---
Q psy14497 24 DVIIVGGGPSGLSAAIRLK----QLAIKKNKEIKICVLEKGSELGAHILSGAI--IDPR--------SIFELFPKEK--- 86 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La----~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~--~~~~--------~l~~l~~~~~--- 86 (561)
||||||||.|||+||+.++ +. |.+|+|+||....+....+++. ++.. ..+..+....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~------G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~ 74 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK------GLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDL 74 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC------CCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhc
Confidence 8999999999999999998 67 9999999998764433222221 1110 0111111111
Q ss_pred cCCc----cc--cccchhhhhhhcCCCCcccCCCCCCceeecCCcEE--eeHHHHHHHHHHHHHHCCCEEEcCceEeEEE
Q psy14497 87 LNKL----FN--TPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYI--ISLSDLVRWMGKKAENMGIDIFSGFSASEIL 158 (561)
Q Consensus 87 ~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~ 158 (561)
.+.. .. .....+.+.|+... +..+....-.......+.+. ..-..+.+.|...+.+.+++++.++.++++.
T Consensus 75 ~gl~d~~lV~~lv~~s~~~i~~L~~~-Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll 153 (614)
T TIGR02061 75 MGLVREDLIFDMARHVDDSVHLFEEW-GLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLL 153 (614)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHc-CCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEE
Confidence 0000 00 01122344555431 11111000000000000000 0123455566666666778999999999998
Q ss_pred EcCC--CCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 159 YDSK--NNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 159 ~~~~--g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.+++ |+++||...+. .+|+. ..+.|+.||.|+|..+.
T Consensus 154 ~d~~~~GrV~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 154 LDKNTPNRIAGAVGFNV---RANEV-------HVFKAKTVIVAAGGAVN 192 (614)
T ss_pred ecCCCCCeEEEEEEEEe---CCCcE-------EEEECCEEEECCCcccc
Confidence 7543 68999876321 22321 36899999999998764
No 171
>KOG2820|consensus
Probab=98.83 E-value=5.9e-08 Score=92.26 Aligned_cols=164 Identities=27% Similarity=0.295 Sum_probs=99.5
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee-cc--eeChhh--------HHhhccccc-
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS-GA--IIDPRS--------IFELFPKEK- 86 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~-G~--~~~~~~--------l~~l~~~~~- 86 (561)
+.+..||+|||||+-|+++|+.|++. |.++.++|+.+.+-.+..+ |. ++.+.. ..+.+..|.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~------g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~ 77 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKR------GDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRN 77 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhc------CCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHh
Confidence 45779999999999999999999999 9999999999876322111 11 111111 112223332
Q ss_pred ----cCCcccc------ccch--hhhhh--------------hcC-CCCcccC-CCCCCcee---ecCCcEEeeHHHHHH
Q psy14497 87 ----LNKLFNT------PVIE--ERFLF--------------LSS-KKSYKIP-SWILPICF---KNHGNYIISLSDLVR 135 (561)
Q Consensus 87 ----~~~~~~~------~~~~--~~~~~--------------~~~-~~~~~~~-~~~~p~~~---~~~~~~~i~r~~l~~ 135 (561)
.+..+.. ..+. .++.- +.+ .-+..+| ...+|... .+..+-.+...+-++
T Consensus 78 ~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk 157 (399)
T KOG2820|consen 78 LPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLK 157 (399)
T ss_pred ChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHH
Confidence 0100000 0000 00000 000 0000122 12233321 123345588889999
Q ss_pred HHHHHHHHCCCEEEcCceEeEEEE-cCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14497 136 WMGKKAENMGIDIFSGFSASEILY-DSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 136 ~L~~~a~~~Gv~i~~g~~v~~i~~-~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
.|.+.+.+.|+.++.|.+|..+.. ++++..+.|.|.+ |....|+-+|.+.|++
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc---------------CCeeecceEEEEecHH
Confidence 999999999999999999998864 3456677788754 5679999999999965
No 172
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.83 E-value=3.6e-08 Score=105.58 Aligned_cols=169 Identities=20% Similarity=0.230 Sum_probs=94.5
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eeccee----Ch-hhHHhhccccc-cCCc--
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAII----DP-RSIFELFPKEK-LNKL-- 90 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~----~~-~~l~~l~~~~~-~~~~-- 90 (561)
++++||||||+|+|||++|+.+++. .+|+|+||....++.. .+++.+ ++ ...+..+.+.. .+..
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-------~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~ 78 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-------RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLC 78 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-------CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCC
Confidence 4679999999999999999999764 6999999998766532 222221 11 11111111111 0000
Q ss_pred ----ccc--ccchhhhhhhcCCCCcccCCC-------CC-CceeecCC-cEEe-----eHHHHHHHHHHHHHH-CCCEEE
Q psy14497 91 ----FNT--PVIEERFLFLSSKKSYKIPSW-------IL-PICFKNHG-NYII-----SLSDLVRWMGKKAEN-MGIDIF 149 (561)
Q Consensus 91 ----~~~--~~~~~~~~~~~~~~~~~~~~~-------~~-p~~~~~~~-~~~i-----~r~~l~~~L~~~a~~-~Gv~i~ 149 (561)
... ......+.|+...+ +.+... .+ +.....+. ...+ .-..+.+.|.+.+.+ .||+++
T Consensus 79 d~~~v~~~~~~~~~~i~~L~~~G-v~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~ 157 (536)
T PRK09077 79 DEDAVRFIAENAREAVQWLIDQG-VPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVL 157 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 000 01122344443311 111100 00 00000000 1111 124678888888876 489999
Q ss_pred cCceEeEEEEcC-----CCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 150 SGFSASEILYDS-----KNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 150 ~g~~v~~i~~~~-----~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
.++.++++..++ +++++||...+. .+|+. ..+.++.||+|+|..+.+
T Consensus 158 ~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 158 ERHNAIDLITSDKLGLPGRRVVGAYVLNR---NKERV-------ETIRAKFVVLATGGASKV 209 (536)
T ss_pred eeEEeeeeeecccccCCCCEEEEEEEEEC---CCCcE-------EEEecCeEEECCCCCCCC
Confidence 999999987643 377888876421 12221 368999999999998864
No 173
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.83 E-value=3.3e-08 Score=103.73 Aligned_cols=45 Identities=27% Similarity=0.547 Sum_probs=37.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeeccee
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAII 73 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~ 73 (561)
+|||+||||||||+++|+.|++. |++|+|+||. .+|+....-+.+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~~-~~GG~c~~~gci 46 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH------GAKALLVEAK-KLGGTCVNVGCV 46 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC------CCcEEEeccc-ccccceeccCcC
Confidence 59999999999999999999999 9999999985 466654433333
No 174
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.83 E-value=4e-08 Score=103.66 Aligned_cols=51 Identities=33% Similarity=0.562 Sum_probs=40.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
.+|||+||||||||+++|..|+++ |++|+|+|+.+..|+....-+.+..+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~~~~GG~c~n~gciP~K~ 53 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL------GLETVCVERYSTLGGVCLNVGCIPSKA 53 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCcccccccCCCcccHHH
Confidence 369999999999999999999999 999999999877776544333333333
No 175
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.82 E-value=7.1e-08 Score=103.72 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecC-EEEEccCCCchh
Q psy14497 132 DLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAK-YTLFAEGSRGHL 206 (561)
Q Consensus 132 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad-~vV~AdG~~S~~ 206 (561)
.+...|.+.+++.|++++++++++++..+ ++++++|.... +|+ ...++|+ .||+|+|..+.-
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-----~g~-------~~~i~A~~~VIlAtGG~~~n 271 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-----SGE-------PQLIRARRGVILASGGFEHN 271 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-----CCc-------EEEEEeceeEEEccCCcCcC
Confidence 45667777788889999999999999875 67888887632 221 1368886 699999987774
No 176
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.82 E-value=5.9e-08 Score=112.55 Aligned_cols=173 Identities=21% Similarity=0.254 Sum_probs=97.4
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeC-h--hh---------HHhhccc-
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIID-P--RS---------IFELFPK- 84 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~-~--~~---------l~~l~~~- 84 (561)
++.++||||||+|.|||+||+.+++. |.+|+|+||.+..|+... +++.+. . +. .+.+...
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~------Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~ 479 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASC------GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDT 479 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHH
Confidence 45679999999999999999999999 999999999988776532 222111 0 00 0000000
Q ss_pred cccC---C----cccc--ccchhhhhhhcCCCCcccCC------CCCCceeecC---CcEEee-HHHHHHHHHHHHHH--
Q psy14497 85 EKLN---K----LFNT--PVIEERFLFLSSKKSYKIPS------WILPICFKNH---GNYIIS-LSDLVRWMGKKAEN-- 143 (561)
Q Consensus 85 ~~~~---~----~~~~--~~~~~~~~~~~~~~~~~~~~------~~~p~~~~~~---~~~~i~-r~~l~~~L~~~a~~-- 143 (561)
+..+ . .... ....+.+.|+.+.+ +.+.. ...+...... .+.... -..+.+.|.+.+++
T Consensus 480 ~~~~~~~~~d~~lv~~~~~~s~e~idwL~~~G-v~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~ 558 (1167)
T PTZ00306 480 HLSGKGGHCDPGLVKTLSVKSADAISWLSSLG-VPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKL 558 (1167)
T ss_pred HHhccCCCCCHHHHHHHHHhhHHHHHHHHHcC-CCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhc
Confidence 0000 0 0000 11223445554321 11110 0001000000 000001 23466777777665
Q ss_pred -CCCEEEcCceEeEEEEcCC----C----CEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 144 -MGIDIFSGFSASEILYDSK----N----NVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 144 -~Gv~i~~g~~v~~i~~~~~----g----~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
.|++|+++++++++..+++ | +|+||...+.+ ..+|+. ..+.|+.||+|+|..+..
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~-~~~g~~-------~~i~AkaVILATGGf~~N 622 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS-DASGQV-------MDLLADAVILATGGFSND 622 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc-cCCCcE-------EEEEeceEEEecCCcccC
Confidence 4999999999999987632 2 78898874310 012321 368999999999998874
No 177
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.81 E-value=4.2e-08 Score=104.28 Aligned_cols=163 Identities=18% Similarity=0.205 Sum_probs=91.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeC-----hhhHHhhccccc-cCCc----
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIID-----PRSIFELFPKEK-LNKL---- 90 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~-----~~~l~~l~~~~~-~~~~---- 90 (561)
++||||||+|.|||++|+.++ . |.+|+|+||.+..++.. .+++.+. ....+..+.+.. .+..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~-~------g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~ 75 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELC-H------EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNE 75 (510)
T ss_pred ccCEEEECccHHHHHHHHHhh-c------CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCH
Confidence 689999999999999999985 5 88999999998766543 1222221 111222222111 0000
Q ss_pred --cccc--cchhhhhhhcCCCCcccCC-----CCCCceeecCCcEEe------eHHHHHHHHHHHHHHCCCEEEcCceEe
Q psy14497 91 --FNTP--VIEERFLFLSSKKSYKIPS-----WILPICFKNHGNYII------SLSDLVRWMGKKAENMGIDIFSGFSAS 155 (561)
Q Consensus 91 --~~~~--~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~i------~r~~l~~~L~~~a~~~Gv~i~~g~~v~ 155 (561)
.... .....+.|+... ++.++. ..+.....+.....+ .-..+.+.|.+.+. .||+++.++.++
T Consensus 76 ~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~ 153 (510)
T PRK08071 76 RAVRYLVEEGPKEIQELIEN-GMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVI 153 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhh
Confidence 0000 012233333321 111110 000000000000111 12457788888775 699999999999
Q ss_pred EEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 156 EILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 156 ~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++..+ ++++.+|.+.+ .+|+. ..++|+.||+|+|..+.
T Consensus 154 ~Li~~-~g~v~Gv~~~~----~~g~~-------~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 154 DLIIE-NGRCIGVLTKD----SEGKL-------KRYYADYVVLASGGCGG 191 (510)
T ss_pred heeec-CCEEEEEEEEE----CCCcE-------EEEEcCeEEEecCCCcc
Confidence 99764 67788887643 12221 36899999999998875
No 178
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.80 E-value=6.7e-08 Score=102.26 Aligned_cols=50 Identities=46% Similarity=0.799 Sum_probs=40.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
..|||+||||||||+++|+.|+++ |++|+|+|+. .+|+....-+.+..+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~-~~GG~c~~~gciPsk~ 52 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL------GLKTALVEKG-KLGGTCLHKGCIPSKA 52 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCeEEEEEcc-CCCcceEcCCcCchHH
Confidence 369999999999999999999999 9999999986 5677655444444433
No 179
>PRK14727 putative mercuric reductase; Provisional
Probab=98.79 E-value=8.3e-08 Score=101.60 Aligned_cols=60 Identities=17% Similarity=0.364 Sum_probs=47.6
Q ss_pred cCCCCCCCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14497 12 INKYGPRESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 12 ~~~~~~~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
++..+.+.++++||+||||||||+++|+.|+++ |.+|+|+|+...+|+.....+.+..+.
T Consensus 6 ~~~~~~~~~~~~dvvvIG~G~aG~~~a~~~~~~------g~~v~~ie~~~~~GG~c~n~GciPsk~ 65 (479)
T PRK14727 6 SSNCMTRSKLQLHVAIIGSGSAAFAAAIKAAEH------GARVTIIEGADVIGGCCVNVGCVPSKI 65 (479)
T ss_pred CccccccCCCCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEEccCcceeEeccccccccHH
Confidence 344556677889999999999999999999999 999999999877877655444443333
No 180
>PRK06116 glutathione reductase; Validated
Probab=98.77 E-value=4.6e-08 Score=102.95 Aligned_cols=39 Identities=33% Similarity=0.710 Sum_probs=35.1
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+|||+||||||||+++|+.|+++ |++|+|+|+. ..|+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~------G~~V~liE~~-~~GG~c 42 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMY------GAKVALIEAK-RLGGTC 42 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC------CCeEEEEecc-chhhhh
Confidence 69999999999999999999999 9999999986 555543
No 181
>KOG2844|consensus
Probab=98.76 E-value=1.8e-07 Score=96.36 Aligned_cols=81 Identities=11% Similarity=0.209 Sum_probs=61.8
Q ss_pred cCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccC
Q psy14497 122 NHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEG 201 (561)
Q Consensus 122 ~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG 201 (561)
.++.-+++...+++.|+.+|.+.|+.|+.++.|+++... .+..++|+|.- ..|++..+|.|+|
T Consensus 178 ~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~----------------G~iet~~~VNaaG 240 (856)
T KOG2844|consen 178 SPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPH----------------GSIETECVVNAAG 240 (856)
T ss_pred cCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccC----------------cceecceEEechh
Confidence 345667899999999999999999999999999999764 44556888843 3799999999999
Q ss_pred CCchhhHHHHHHcCCCCCCCC
Q psy14497 202 SRGHLSKQIIKKFNLDNKKDP 222 (561)
Q Consensus 202 ~~S~~~~~l~~~~g~~~~~~~ 222 (561)
.+. +.+....+...+..|
T Consensus 241 vWA---r~Vg~m~gvkvPL~p 258 (856)
T KOG2844|consen 241 VWA---REVGAMAGVKVPLVP 258 (856)
T ss_pred HHH---HHhhhhcCCccccee
Confidence 665 444433555544333
No 182
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.76 E-value=1.8e-08 Score=92.82 Aligned_cols=39 Identities=36% Similarity=0.619 Sum_probs=36.2
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
.+|+|||+|||||++|+.|+.. |++|+||||+...|+++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~a------G~~vtV~eKg~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREA------GREVTVFEKGRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhc------CcEEEEEEcCCCcccch
Confidence 3699999999999999999999 99999999999888764
No 183
>PRK06370 mercuric reductase; Validated
Probab=98.76 E-value=7.6e-08 Score=101.64 Aligned_cols=51 Identities=27% Similarity=0.592 Sum_probs=40.1
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhH
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l 78 (561)
.+|||+||||||||+++|+.|+++ |++|+|+|+. .+|+....-+.+.++.+
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~-~~GG~c~~~gciPsk~l 54 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGL------GMKVALIERG-LLGGTCVNTGCVPTKTL 54 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCeEEEEecC-ccCCceeccccCcHHHH
Confidence 359999999999999999999999 9999999986 45555444344444443
No 184
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.76 E-value=1.9e-09 Score=85.85 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=42.6
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCCC
Q psy14497 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPEG 552 (561)
Q Consensus 487 ~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g 552 (561)
+..|..|. +.+|+.+||+++|..+++ . ..+.+|+++|++|+.|..+||+++|.|....+
T Consensus 6 ~~~C~hC~----~ppC~~~CP~~Ai~~~~~-~--G~V~id~~~CigC~~C~~aCP~~ai~~~~~~~ 64 (98)
T PF13247_consen 6 PVQCRHCE----DPPCVEACPTGAIYKDPE-D--GIVVIDEDKCIGCGYCVEACPYGAIRFDPDTG 64 (98)
T ss_dssp EEC---BS----S-HHHHHCTTTSEEEETT-T--S-EEE-TTTCCTHHHHHHH-TTS-EEEETTTT
T ss_pred CCcCcCcC----CCchhhhCCccceEEEcC-C--CeEEechhhccCchhhhhhhccCcceeecccc
Confidence 46687765 689999999999887652 2 36899999999999999999999999976544
No 185
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.75 E-value=2.5e-07 Score=91.81 Aligned_cols=88 Identities=23% Similarity=0.404 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch-hhH
Q psy14497 130 LSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH-LSK 208 (561)
Q Consensus 130 r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~-~~~ 208 (561)
...+.+-+.+.+++.|++++++++|.+++.. ++.+.+|.+. +|.++.+|.||.|-|+.+. +-.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~---------------~g~~i~~~~vvlA~Grsg~dw~~ 235 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLT---------------KGEEIEADYVVLAPGRSGRDWFE 235 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEcc---------------CCcEEecCEEEEccCcchHHHHH
Confidence 3467888899999999999999999999875 4546667764 3679999999999998887 445
Q ss_pred HHHHHcCCCCCCCCccccceeEEEEeeCC
Q psy14497 209 QIIKKFNLDNKKDPQTYSLGIKELWTINP 237 (561)
Q Consensus 209 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 237 (561)
.+.+++|+.....| +.+|++ ++.|.
T Consensus 236 ~l~~K~Gv~~~~~p--~dIGVR--vE~p~ 260 (486)
T COG2509 236 MLHKKLGVKMRAKP--FDIGVR--VEHPQ 260 (486)
T ss_pred HHHHhcCcccccCC--eeEEEE--Eecch
Confidence 66777788775544 445555 44443
No 186
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.74 E-value=1.4e-07 Score=98.78 Aligned_cols=160 Identities=17% Similarity=0.188 Sum_probs=92.1
Q ss_pred EECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC--CCCceeecce--eC----hh------hHHhhcccccc--CC-
Q psy14497 27 IVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE--LGAHILSGAI--ID----PR------SIFELFPKEKL--NK- 89 (561)
Q Consensus 27 IVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~--~g~~~~~G~~--~~----~~------~l~~l~~~~~~--~~- 89 (561)
|||+|+|||++|+.+++. |.+|+|+||.+. .|+....+.. .. .. ..++++..+.. +.
T Consensus 1 VVG~G~AGl~AA~~Aa~~------Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA------GASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGR 74 (432)
T ss_pred CCcccHHHHHHHHHHHhC------CCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCC
Confidence 799999999999999999 999999999875 2332211111 00 00 01111122210 00
Q ss_pred ---cccc---ccchhhhhhhcCCCCcccCCC---CCCceeecCCcEE-eeHHHHHHHHHHHHHHCCCEEEcCceEeEEEE
Q psy14497 90 ---LFNT---PVIEERFLFLSSKKSYKIPSW---ILPICFKNHGNYI-ISLSDLVRWMGKKAENMGIDIFSGFSASEILY 159 (561)
Q Consensus 90 ---~~~~---~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~-i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~ 159 (561)
.+.. ....+.+.|+.+.+ +.+... ..+. .....+. -.-..+.+.|.+.+++.|++|+++++|+++..
T Consensus 75 ~d~~l~~~~~~~s~~~i~wl~~~G-v~f~~~~~g~~~~--~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~ 151 (432)
T TIGR02485 75 TNESLSRLGIGRGSRDLRWAFAHG-VHLQPPAAGNLPY--SRRTAFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPP 151 (432)
T ss_pred CCHHHHHHHHhcchhHHHHHHhCC-ceeeecCCCCccc--cCceeeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEe
Confidence 0000 01223445554321 111100 0000 0000010 01346888999999999999999999999987
Q ss_pred cC-CCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHH
Q psy14497 160 DS-KNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQ 209 (561)
Q Consensus 160 ~~-~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~ 209 (561)
++ ++.+++|.+.+ ++.+++++.||+|+|..+..+..
T Consensus 152 ~~~~g~v~gv~~~~--------------~~~~i~ak~VIlAtGG~~~n~~~ 188 (432)
T TIGR02485 152 EAFDGAHDGPLTTV--------------GTHRITTQALVLAAGGLGANRDW 188 (432)
T ss_pred cCCCCeEEEEEEcC--------------CcEEEEcCEEEEcCCCcccCHHH
Confidence 53 56777776521 12478999999999988876443
No 187
>PRK12831 putative oxidoreductase; Provisional
Probab=98.74 E-value=2.4e-08 Score=104.85 Aligned_cols=42 Identities=29% Similarity=0.478 Sum_probs=37.8
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
.....||+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~------G~~V~v~e~~~~~GG~ 178 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKM------GYDVTIFEALHEPGGV 178 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCCe
Confidence 34568999999999999999999999 9999999998887664
No 188
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.74 E-value=8.5e-08 Score=100.56 Aligned_cols=40 Identities=28% Similarity=0.559 Sum_probs=35.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC-CCCc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE-LGAH 66 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~-~g~~ 66 (561)
++|||+||||||||+++|..|+++ |++|+|+||.+. .|+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~------g~~V~liE~~~~~~GG~ 42 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASA------GKKVALVEESKAMYGGT 42 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC------CCEEEEEecCCccccee
Confidence 369999999999999999999999 999999999864 4554
No 189
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.74 E-value=3.8e-08 Score=104.71 Aligned_cols=166 Identities=20% Similarity=0.185 Sum_probs=91.8
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC-CCCc-eee-cce---eCh-hhHHhhccccc-cCC
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE-LGAH-ILS-GAI---IDP-RSIFELFPKEK-LNK 89 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~-~g~~-~~~-G~~---~~~-~~l~~l~~~~~-~~~ 89 (561)
+.+.++||||||+|.|||+||+.++ +.+|+|+||.+. .++. ..+ |++ +.+ ...+..+.++. .+.
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAl~Aa--------~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~ 76 (513)
T PRK07512 5 LRILTGRPVIVGGGLAGLMAALKLA--------PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGA 76 (513)
T ss_pred ccCCcCCEEEECchHHHHHHHHHhC--------cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhC
Confidence 3456799999999999999999883 459999999986 3332 222 221 111 11111111111 000
Q ss_pred c------ccc--ccchhhhhhhcCCCCcccCCC----CCCceeecCC---cEEe----eHHHHHHHHHHHHHHC-CCEEE
Q psy14497 90 L------FNT--PVIEERFLFLSSKKSYKIPSW----ILPICFKNHG---NYII----SLSDLVRWMGKKAENM-GIDIF 149 (561)
Q Consensus 90 ~------~~~--~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~---~~~i----~r~~l~~~L~~~a~~~-Gv~i~ 149 (561)
. ... ....+.+.|+...+ +.+... ........+. .+.. .-..+.+.|.+.+.+. ||+++
T Consensus 77 g~~d~~~v~~~~~~s~~~i~wL~~~G-v~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~ 155 (513)
T PRK07512 77 GLCDPAVAALITAEAPAAIEDLLRLG-VPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVL 155 (513)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhC-CccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0 000 01123344443311 111100 0000000000 1111 1346888898888764 89999
Q ss_pred cCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 150 SGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 150 ~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.++.++++..+ ++++++|.+.+ ++. ...+.|+.||+|+|..+.
T Consensus 156 ~~~~v~~Li~~-~g~v~Gv~~~~-----~~~-------~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 156 EGAEARRLLVD-DGAVAGVLAAT-----AGG-------PVVLPARAVVLATGGIGG 198 (513)
T ss_pred ECcChhheeec-CCEEEEEEEEe-----CCe-------EEEEECCEEEEcCCCCcC
Confidence 99999998764 67888887632 111 026899999999998764
No 190
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.74 E-value=9.2e-08 Score=100.89 Aligned_cols=51 Identities=41% Similarity=0.716 Sum_probs=41.1
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
.+|||+||||||||+++|+.|+++ |++|+|+|+...+|+....-+.+..+.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~------G~~V~liE~~~~~GG~c~~~gciPsK~ 52 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQL------GLKVACVEGRSTLGGTCLNVGCMPSKA 52 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCceeeeeccCcccccHH
Confidence 359999999999999999999999 999999998767777654434443333
No 191
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.73 E-value=1e-07 Score=84.59 Aligned_cols=36 Identities=36% Similarity=0.595 Sum_probs=30.2
Q ss_pred EEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14497 26 IIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 26 vIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
+||||||+|++++..|.+.. ...+..+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCc
Confidence 69999999999999999884 2345789999999554
No 192
>PTZ00058 glutathione reductase; Provisional
Probab=98.73 E-value=1.2e-07 Score=101.16 Aligned_cols=53 Identities=28% Similarity=0.557 Sum_probs=41.9
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
...++|||+||||||||+++|+.+++. |.+|+|+||. .+|+...+-+.+..+.
T Consensus 44 ~~~~~yDvvVIG~G~aG~~aA~~aa~~------G~~ValIEk~-~~GGtCln~GCiPsK~ 96 (561)
T PTZ00058 44 KPRMVYDLIVIGGGSGGMAAARRAARN------KAKVALVEKD-YLGGTCVNVGCVPKKI 96 (561)
T ss_pred CCCccccEEEECcCHHHHHHHHHHHHc------CCeEEEEecc-cccccccccCCCCCch
Confidence 345789999999999999999999999 9999999986 4666544434443333
No 193
>PRK09897 hypothetical protein; Provisional
Probab=98.72 E-value=1.6e-07 Score=99.20 Aligned_cols=40 Identities=30% Similarity=0.556 Sum_probs=34.2
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
.+|+||||||+|+++|..|.+. ...++|+|||+...+|..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~----~~~l~V~lfEp~~~~G~G 41 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ----QTPLSISIFEQADEAGVG 41 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc----CCCCcEEEEecCCCCCcc
Confidence 4899999999999999999886 235799999998887743
No 194
>PRK14694 putative mercuric reductase; Provisional
Probab=98.72 E-value=2.1e-07 Score=98.40 Aligned_cols=51 Identities=16% Similarity=0.444 Sum_probs=40.6
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChh
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPR 76 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~ 76 (561)
...+|||+||||||||+++|+.|++. |.+|+|||+. .+|+...+-+.+..+
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~------g~~v~lie~~-~~GGtc~n~GciPsk 53 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATER------GARVTLIERG-TIGGTCVNIGCVPSK 53 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEEcc-ccccceecCCccccH
Confidence 45679999999999999999999999 9999999986 466654443333333
No 195
>KOG2852|consensus
Probab=98.72 E-value=5.3e-07 Score=83.87 Aligned_cols=170 Identities=17% Similarity=0.233 Sum_probs=92.7
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeC----hh---hH--------Hhh
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIID----PR---SI--------FEL 81 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~----~~---~l--------~~l 81 (561)
++.....|+|||||+.|.++|+.|++..--+..-+.|+|||+....++.. ..++.+. +. .| +++
T Consensus 6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~L 85 (380)
T KOG2852|consen 6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEEL 85 (380)
T ss_pred ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHH
Confidence 34455899999999999999999999821111128999999987765532 1222221 11 00 111
Q ss_pred cc------ccccC--Ccccc---------ccchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC
Q psy14497 82 FP------KEKLN--KLFNT---------PVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM 144 (561)
Q Consensus 82 ~~------~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~ 144 (561)
-. .|+.. ..... ....+...|+....... ...........+++...|++.+++.+++.
T Consensus 86 sdeydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~-----~ssiG~t~ttaqvhP~lFc~~i~sea~k~ 160 (380)
T KOG2852|consen 86 SDEYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQK-----CSSIGSTNTTAQVHPYLFCHFILSEAEKR 160 (380)
T ss_pred HHhhcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhh-----heeccCCCccceeCHHHHHHHHHHHHHhh
Confidence 11 12200 00000 01112233332210000 00001112356799999999999999886
Q ss_pred C-CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 145 G-IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 145 G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
| |++.+|. |.++. ++.+++..|-..+ ..+ .......+.+|.+.|.++.
T Consensus 161 ~~V~lv~Gk-v~ev~-dEk~r~n~v~~ae----~~~-------ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 161 GGVKLVFGK-VKEVS-DEKHRINSVPKAE----AED-------TIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred cCeEEEEee-eEEee-cccccccccchhh----hcC-------ceEEeeeeEEEEecCCCch
Confidence 4 9999984 66664 3345544443321 000 1345678899999997765
No 196
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.72 E-value=9.3e-08 Score=100.35 Aligned_cols=41 Identities=22% Similarity=0.491 Sum_probs=36.0
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC-CCCce
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE-LGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~-~g~~~ 67 (561)
.+|||+||||||||+++|+.|+++ |++|+|+|+.+. .|+..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~------g~~V~lie~~~~~~GG~~ 43 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA------GWRVALIEQSNAMYGGTC 43 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC------CCeEEEEcCCCCccceeE
Confidence 369999999999999999999999 999999999763 55544
No 197
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.71 E-value=7.8e-08 Score=97.16 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=34.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g 64 (561)
..||+|||||+||+.+|+.|++. |++|+|+|+++...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~------Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR------GVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccC
Confidence 46999999999999999999999 99999999887653
No 198
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.71 E-value=1.4e-07 Score=99.77 Aligned_cols=33 Identities=42% Similarity=0.836 Sum_probs=31.7
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcC
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk 59 (561)
.+|||+||||||||+++|+.|++. |.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~------g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL------GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC------CCeEEEEec
Confidence 369999999999999999999999 999999998
No 199
>PRK10262 thioredoxin reductase; Provisional
Probab=98.70 E-value=1.5e-07 Score=94.39 Aligned_cols=115 Identities=15% Similarity=0.231 Sum_probs=73.5
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
+..+||+|||||||||++|..|+++ |++|+|||+. ..|+....... +.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~------g~~~~~ie~~-~~gg~~~~~~~---------~~---------------- 51 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARA------NLQPVLITGM-EKGGQLTTTTE---------VE---------------- 51 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHC------CCCeEEEEee-cCCCceecCce---------EC----------------
Confidence 3569999999999999999999999 9999999964 44443211000 00
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
.++.. ...++...+.+.+.+.+...+++++.+ .|+++... ++ .+.+...
T Consensus 52 ----------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~-~~-~~~v~~~-------- 100 (321)
T PRK10262 52 ----------NWPGD----------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQ-NR-PFRLTGD-------- 100 (321)
T ss_pred ----------CCCCC----------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEec-CC-eEEEEec--------
Confidence 00100 001233456777788887777877765 46666543 22 2333321
Q ss_pred ceecccccCeEEecCEEEEccCCCch
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
...+++|.||+|+|.+..
T Consensus 101 --------~~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 101 --------SGEYTCDALIIATGASAR 118 (321)
T ss_pred --------CCEEEECEEEECCCCCCC
Confidence 126899999999998753
No 200
>KOG2853|consensus
Probab=98.69 E-value=3e-06 Score=80.71 Aligned_cols=41 Identities=37% Similarity=0.652 Sum_probs=34.7
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~ 63 (561)
.+.||+|||||-.|++.|+||+++. .+.|++|+|+||....
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~--rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERA--RDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHh--hcCCceEEEEeccCcc
Confidence 4799999999999999999998763 2347999999998653
No 201
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.68 E-value=2.1e-08 Score=74.77 Aligned_cols=35 Identities=40% Similarity=0.634 Sum_probs=32.2
Q ss_pred EECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 27 IVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 27 IVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
|||||++||++|+.|++. |++|+|+|+.+.+|+..
T Consensus 1 IiGaG~sGl~aA~~L~~~------g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA------GYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHT------TSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHC------CCcEEEEecCcccCcce
Confidence 899999999999999999 99999999999998764
No 202
>PLN02507 glutathione reductase
Probab=98.66 E-value=2.6e-07 Score=97.97 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=32.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcC
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk 59 (561)
..+|||+||||||||+++|..|+++ |.+|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~------G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANF------GAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHC------CCeEEEEec
Confidence 3469999999999999999999999 999999996
No 203
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.66 E-value=2.9e-07 Score=71.49 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=62.8
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhhh
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFL 103 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (561)
.|+|||||+.|+-+|..|++. |.+|+|+++.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~~~~~~------------------------------------- 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSDRLLPG------------------------------------- 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSSSSSTT-------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccchhhhh-------------------------------------
Confidence 489999999999999999999 9999999999876310
Q ss_pred cCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEec
Q psy14497 104 SSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATN 171 (561)
Q Consensus 104 ~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~ 171 (561)
++ .++.+.+.+.+++.||++++++.++++..++++ +. |++.
T Consensus 38 ------------~~-------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~ 78 (80)
T PF00070_consen 38 ------------FD-------------PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLE 78 (80)
T ss_dssp ------------SS-------------HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEE
T ss_pred ------------cC-------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEe
Confidence 00 145566777788889999999999999987666 54 6663
No 204
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.63 E-value=4.2e-08 Score=91.26 Aligned_cols=33 Identities=48% Similarity=0.871 Sum_probs=31.0
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
||+||||||||+++|..|++. +++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~------~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP------GAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcC------CCeEEEEecccc
Confidence 799999999999999999999 999999988764
No 205
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.63 E-value=1.6e-06 Score=89.55 Aligned_cols=98 Identities=20% Similarity=0.331 Sum_probs=73.2
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
.+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+....
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtlv~~~~~~l~~~----------------------------------- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR------RCKVTVIELAATVMGRN----------------------------------- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCcchhhh-----------------------------------
Confidence 5799999999999999999999 99999999876542100
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
.+ ..+.+.+.+.+++.||+++++++++++.. ++ .+.|.+.
T Consensus 184 -------------~~-------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~-~~~v~l~----------- 223 (396)
T PRK09754 184 -------------AP-------------PPVQRYLLQRHQQAGVRILLNNAIEHVVD--GE-KVELTLQ----------- 223 (396)
T ss_pred -------------cC-------------HHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CC-EEEEEEC-----------
Confidence 00 12445566677788999999999999864 22 2334442
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+|.++.+|+||.|.|....
T Consensus 224 ----~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 224 ----SGETLQADVVIYGIGISAN 242 (396)
T ss_pred ----CCCEEECCEEEECCCCChh
Confidence 3568999999999997654
No 206
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.63 E-value=8.2e-08 Score=107.15 Aligned_cols=41 Identities=32% Similarity=0.441 Sum_probs=36.8
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
....+|+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~------G~~V~v~e~~~~~GG~ 469 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR------GYDVTVFEALHEIGGV 469 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCCCCCCe
Confidence 3467999999999999999999999 9999999998777653
No 207
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.63 E-value=6.9e-08 Score=109.82 Aligned_cols=40 Identities=33% Similarity=0.435 Sum_probs=36.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+|||||||||++|+.|+++ |++|+|||+.+.+|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~------G~~VtV~E~~~~~GG~ 468 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY------GVDVTVYEALHVVGGV 468 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCcce
Confidence 457999999999999999999999 9999999998887653
No 208
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.63 E-value=1.6e-07 Score=106.46 Aligned_cols=171 Identities=19% Similarity=0.221 Sum_probs=89.4
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC-ceeec-ceeC----h--hhHHhhccccc-cC
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA-HILSG-AIID----P--RSIFELFPKEK-LN 88 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~-~~~~G-~~~~----~--~~l~~l~~~~~-~~ 88 (561)
...+++||+|||||.|||++|+.+++. |.+|+|+||.....+ ....| +.++ + ...+..+.+.. .+
T Consensus 9 ~~~~~~DVlVVG~G~AGl~AAl~Aa~~------G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g 82 (897)
T PRK13800 9 ALRLDCDVLVIGGGTAGTMAALTAAEH------GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRAN 82 (897)
T ss_pred cceeecCEEEECcCHHHHHHHHHHHHC------CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhc
Confidence 345789999999999999999999999 999999999875221 11111 0110 0 11111111111 00
Q ss_pred Ccc------cc--ccchhhhhhhcCCCCcccCCCC---CC-ceeecCCcEEe---eHHHHHHHHHHHHHH----CCCEEE
Q psy14497 89 KLF------NT--PVIEERFLFLSSKKSYKIPSWI---LP-ICFKNHGNYII---SLSDLVRWMGKKAEN----MGIDIF 149 (561)
Q Consensus 89 ~~~------~~--~~~~~~~~~~~~~~~~~~~~~~---~p-~~~~~~~~~~i---~r~~l~~~L~~~a~~----~Gv~i~ 149 (561)
..+ .. ......+.|+... ++.+.... +. ......+.+.. .-..+.+.|.+.+.+ .+|.+.
T Consensus 83 ~gl~d~~~v~~~~~~a~~~i~~L~~~-Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~ 161 (897)
T PRK13800 83 DGIVNQRTVYQTATRGFAMVQRLERY-GVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIE 161 (897)
T ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHc-CCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEE
Confidence 000 00 0011234444321 11111000 00 00000000100 122445555555543 368888
Q ss_pred cCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 150 SGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 150 ~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
.++.+.++..+ +|+++||..-+. .+|+. ..+.|+.||.|+|..+.+
T Consensus 162 ~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 162 NRLMPVRVLTE-GGRAVGAAALNT---RTGEF-------VTVGAKAVILATGPCGRL 207 (897)
T ss_pred eceeeEEEEee-CCEEEEEEEEec---CCCcE-------EEEECCEEEECCCccccC
Confidence 88888888764 678888875321 22321 368999999999988754
No 209
>KOG2404|consensus
Probab=98.62 E-value=1.8e-07 Score=88.20 Aligned_cols=172 Identities=19% Similarity=0.298 Sum_probs=100.4
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee-ecceeChhh--HH---------hhc-ccc----c
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL-SGAIIDPRS--IF---------ELF-PKE----K 86 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~-~G~~~~~~~--l~---------~l~-~~~----~ 86 (561)
.|+|||+|.|||+++..|-.. |-.|+++|+....|+... ....++... .+ +++ .+- .
T Consensus 11 pvvVIGgGLAGLsasn~iin~------gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~sak 84 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK------GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAK 84 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc------CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcc
Confidence 699999999999999999888 777999999998887532 111121110 00 000 000 0
Q ss_pred -cCCc----cccccchhhhhhhcCCCCcccC------CCCCCceeec----CCcEEeeHHHHHHHHHHHHHH------CC
Q psy14497 87 -LNKL----FNTPVIEERFLFLSSKKSYKIP------SWILPICFKN----HGNYIISLSDLVRWMGKKAEN------MG 145 (561)
Q Consensus 87 -~~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~----~~~~~i~r~~l~~~L~~~a~~------~G 145 (561)
.+.+ .........+.|+.....+.++ ....|+..+. +.++ .+...|..++++ .-
T Consensus 85 sk~~~eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgf-----ei~~~L~~~l~k~as~~pe~ 159 (477)
T KOG2404|consen 85 SKGVPELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGF-----EIVKALSTRLKKKASENPEL 159 (477)
T ss_pred cCCcHHHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCch-----HHHHHHHHHHHHhhhcChHH
Confidence 0000 0011223455666543322221 1112221111 1123 444445444433 23
Q ss_pred CEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCC
Q psy14497 146 IDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDN 218 (561)
Q Consensus 146 v~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~ 218 (561)
++|..+++|+++.. ++|.+.+|..-| .+|+. ..+.++.||.|+|..+.--+.+.+.++.+.
T Consensus 160 ~ki~~nskvv~il~-n~gkVsgVeymd----~sgek-------~~~~~~~VVlatGGf~ysd~~lLKey~pel 220 (477)
T KOG2404|consen 160 VKILLNSKVVDILR-NNGKVSGVEYMD----ASGEK-------SKIIGDAVVLATGGFGYSDKELLKEYGPEL 220 (477)
T ss_pred Hhhhhcceeeeeec-CCCeEEEEEEEc----CCCCc-------cceecCceEEecCCcCcChHHHHHHhChhh
Confidence 88999999999985 488899998754 34432 468899999999999975577777665443
No 210
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.62 E-value=9.3e-08 Score=100.23 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=37.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...++|+|||||||||++|..|++. |++|+|||+.+.+|+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~------G~~V~vie~~~~~GG~ 171 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA------GHSVTVFEALHKPGGV 171 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCcE
Confidence 4568999999999999999999999 9999999998877653
No 211
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.62 E-value=8.3e-08 Score=105.41 Aligned_cols=40 Identities=30% Similarity=0.546 Sum_probs=36.8
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~ 365 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGL 365 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCce
Confidence 468999999999999999999999 9999999999887764
No 212
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.59 E-value=1.8e-07 Score=97.65 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=39.1
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
......+|+|||||||||++|..|+++ .+|++|+|||+.+.+++.+.
T Consensus 22 ~~~~~~~VaIVGaGPAGl~AA~~L~~~----~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 22 STSEPLHVCVVGSGPAGFYTADKLLKA----HDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHhh----CCCCeEEEEecCCCCcceEe
Confidence 344568999999999999999999873 22999999999998877443
No 213
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.59 E-value=1.6e-07 Score=99.01 Aligned_cols=40 Identities=30% Similarity=0.561 Sum_probs=36.5
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~ 65 (561)
....+|+|||||||||++|+.|++. |++|+|||+.+.+|+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~------g~~V~lie~~~~~gG 177 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK------GYDVTIFEARDKAGG 177 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCc
Confidence 4568999999999999999999999 999999999987765
No 214
>PLN02546 glutathione reductase
Probab=98.58 E-value=2.4e-07 Score=98.86 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=31.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcC
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk 59 (561)
.+|||+||||||+|+.+|..|+++ |.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF------GASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCeEEEEec
Confidence 469999999999999999999999 999999996
No 215
>PRK13748 putative mercuric reductase; Provisional
Probab=98.58 E-value=7.3e-07 Score=96.67 Aligned_cols=49 Identities=16% Similarity=0.445 Sum_probs=39.6
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPR 76 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~ 76 (561)
.+|||+||||||||+++|+.|++. |.+|+|+|+. .+|+....-+.+..+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~------G~~v~lie~~-~~GG~c~n~gciPsk 145 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ------GARVTLIERG-TIGGTCVNVGCVPSK 145 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecC-cceeeccccCccccH
Confidence 369999999999999999999999 9999999987 666654443333333
No 216
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.58 E-value=2.1e-07 Score=98.41 Aligned_cols=48 Identities=27% Similarity=0.626 Sum_probs=38.3
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRS 77 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~ 77 (561)
|||+||||||||+++|+.|+++ |++|+|+|+.+ .|+....-+.+..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~------g~~v~lie~~~-~GG~c~n~gciPsk~ 48 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL------GASVAMVERGP-LGGTCVNVGCVPSKM 48 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCc-ccCCeeeecEEccHH
Confidence 7999999999999999999999 99999999876 566544333333333
No 217
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.58 E-value=3e-07 Score=94.86 Aligned_cols=54 Identities=41% Similarity=0.749 Sum_probs=45.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHH
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIF 79 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~ 79 (561)
+++|||+||||||||.++|+.++++ |.+|+|+|+....|+.-++-+.+..++|.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~------G~kvalvE~~~~lGGtCln~GCIPsK~Ll 55 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL------GLKVALVEKGERLGGTCLNVGCIPSKALL 55 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC------CCCEEEEeecCCcCceEEeeCccccHHHH
Confidence 4679999999999999999999999 99999999997777766555555555554
No 218
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.57 E-value=1.5e-07 Score=98.97 Aligned_cols=40 Identities=28% Similarity=0.567 Sum_probs=36.8
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+|||||||||++|..|++. |++|+|+|+.+.+|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~ 179 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGL 179 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCce
Confidence 568999999999999999999999 9999999999887663
No 219
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.57 E-value=3.1e-07 Score=97.05 Aligned_cols=41 Identities=49% Similarity=0.882 Sum_probs=36.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~ 69 (561)
+|||+||||||||+++|+.|++. |.+|+|+|+ +.+|+...+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~------G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL------GLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC------CCeEEEEec-CCCCCceee
Confidence 48999999999999999999999 999999999 677775443
No 220
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.56 E-value=1.8e-07 Score=98.74 Aligned_cols=41 Identities=34% Similarity=0.571 Sum_probs=37.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
....+|+|||||||||++|..|++. |++|+|||+.+.+|+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~ 181 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGL 181 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCce
Confidence 3457999999999999999999999 9999999999887653
No 221
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.55 E-value=5.4e-07 Score=95.65 Aligned_cols=171 Identities=22% Similarity=0.314 Sum_probs=95.1
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee--cce---e-Chh-----hHHhhccc---
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS--GAI---I-DPR-----SIFELFPK--- 84 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~--G~~---~-~~~-----~l~~l~~~--- 84 (561)
...++||||||||.|||.+|+.++.. |++|+|+||....+++... |++ + +.. ..+..+.+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~------g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvk 76 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEA------GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVK 76 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhc------CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHh
Confidence 34679999999999999999999999 9999999999988766432 111 1 010 11111100
Q ss_pred ---cc-cCCccc--cccchhhhhhhcCCCCcc---cCCCCCCceeec----CCcEEee--HHHHHHHHHHHHHH-CCCEE
Q psy14497 85 ---EK-LNKLFN--TPVIEERFLFLSSKKSYK---IPSWILPICFKN----HGNYIIS--LSDLVRWMGKKAEN-MGIDI 148 (561)
Q Consensus 85 ---~~-~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~----~~~~~i~--r~~l~~~L~~~a~~-~Gv~i 148 (561)
+. ...... .......+.++...+... .+.....+.+.. +..+.-. -..+...|.+++.+ .++++
T Consensus 77 g~d~l~dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~ 156 (562)
T COG1053 77 GGDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEI 156 (562)
T ss_pred ccCCcCCHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchh
Confidence 00 000000 001112222222111000 000000000000 0111111 23578888888887 67789
Q ss_pred EcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 149 FSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 149 ~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+.+..+.++..++++.+.+|..-+. .+|+. ..++++.||.|+|..+.
T Consensus 157 ~~~~~~~~l~~~~~~~v~Gvv~~~~---~~g~~-------~~~~akavilaTGG~g~ 203 (562)
T COG1053 157 FDEYFVLDLLVDDGGGVAGVVARDL---RTGEL-------YVFRAKAVILATGGAGR 203 (562)
T ss_pred hhhhhhhhheecCCCcEEEEEEEEe---cCCcE-------EEEecCcEEEccCCceE
Confidence 9999999998765555777665331 23332 46789999999998884
No 222
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.54 E-value=8.5e-07 Score=101.58 Aligned_cols=40 Identities=30% Similarity=0.630 Sum_probs=36.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
..+||+|||||||||++|+.|++. |++|+|+|+.+.+|+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~------G~~V~liD~~~~~GG~ 201 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA------GARVILVDEQPEAGGS 201 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCCCCe
Confidence 468999999999999999999999 9999999999888663
No 223
>CHL00065 psaC photosystem I subunit VII
Probab=98.54 E-value=2.2e-08 Score=77.86 Aligned_cols=60 Identities=25% Similarity=0.366 Sum_probs=45.2
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecC---ceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN---KIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~---~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
+++.+.|+. ++.|+.+||.+++++.+... +.....++.+.|+.|+.|..+||.+||+|+.
T Consensus 5 ~~~~~~Ci~------Cg~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 67 (81)
T CHL00065 5 VKIYDTCIG------CTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred cCccccCCC------hhHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEE
Confidence 346688988 45799999999988754311 1112345779999999999999999998764
No 224
>KOG3256|consensus
Probab=98.53 E-value=2.7e-08 Score=83.34 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=45.2
Q ss_pred CCCCcccccccccccccccccCCeeEEEEee--cCce---eEEEEccCCCccCCcccccCCCCCeeE
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIE--KNKI---QHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~--~~~~---~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
..+.|+.| +.|..+||+.++.++-. .+++ .++.+|-..||-||.|...||.+||..
T Consensus 109 geerCIAC------klCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaive 169 (212)
T KOG3256|consen 109 GEERCIAC------KLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 169 (212)
T ss_pred cchhhhhH------HHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCccceec
Confidence 45789995 56999999999876443 2332 467899999999999999999999976
No 225
>KOG2960|consensus
Probab=98.53 E-value=1.6e-07 Score=83.13 Aligned_cols=152 Identities=22% Similarity=0.395 Sum_probs=91.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce-eecceeChhhHHhhccccccCCccccccchhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI-LSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
+.||+|||+|-|||++|+..++. .|.++|.|||..-.+|+.. +.|..++.-.+++ |. -
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~----rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRK---------PA--------h 134 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKN----RPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRK---------PA--------H 134 (328)
T ss_pred ccceEEECCCccccceeeeeecc----CCCceEEEEEeeecCCCcccccchhhhhhhhcC---------hH--------H
Confidence 58999999999999999999987 7899999999998887643 3333332211111 00 0
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEe--eHHHHHHHHH-HHHHHCCCEEEcCceEeEEEEcC--CC--CEEEEEeccc
Q psy14497 101 LFLSSKKSYKIPSWILPICFKNHGNYII--SLSDLVRWMG-KKAENMGIDIFSGFSASEILYDS--KN--NVCGIATNNF 173 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i--~r~~l~~~L~-~~a~~~Gv~i~~g~~v~~i~~~~--~g--~v~~V~~~~~ 173 (561)
.|+++ +.+| +.+.+.|++ +...|..... +.+...+|+++.-+.|+++...+ +| ++.||.++..
T Consensus 135 LFL~E---igvp-------YedegdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWt 204 (328)
T KOG2960|consen 135 LFLQE---IGVP-------YEDEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWT 204 (328)
T ss_pred HHHHH---hCCC-------cccCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeE
Confidence 11111 1111 223445544 2333433333 33444799999999998876432 33 4667766432
Q ss_pred cccc-CCceecccccCeEEecCEEEEccCCCchh
Q psy14497 174 GINK-EGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 174 ~~~~-~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
-..+ .|. -..-|...+++.+||-++|..+..
T Consensus 205 LV~qnHgt--QsCMDPNviea~~vvS~tGHDGPF 236 (328)
T KOG2960|consen 205 LVTQNHGT--QSCMDPNVIEAAVVVSTTGHDGPF 236 (328)
T ss_pred EeeeccCc--cccCCCCeeeEEEEEEccCCCCCc
Confidence 2211 121 122344689999999999977664
No 226
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.51 E-value=2.6e-07 Score=97.61 Aligned_cols=41 Identities=44% Similarity=0.752 Sum_probs=36.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
++|||+||||||||+++|+.|++. |.+|+|+|+ ...|+...
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~------g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL------GKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC------CCeEEEEeC-Ccccccee
Confidence 569999999999999999999999 999999999 55666543
No 227
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.51 E-value=4e-07 Score=96.65 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=31.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~ 60 (561)
.|||+||||||||+++|+.|+++ |.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~------G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH------GKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC------CCeEEEEecc
Confidence 58999999999999999999999 9999999973
No 228
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.50 E-value=2.2e-07 Score=95.97 Aligned_cols=76 Identities=28% Similarity=0.431 Sum_probs=60.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
....|+|||||||||++|..|++. |++|+|+|+.+.+|+.+..|
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~------G~~Vtv~e~~~~~GGll~yG------------------------------ 165 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRA------GHDVTVFERVALDGGLLLYG------------------------------ 165 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhC------CCeEEEeCCcCCCceeEEec------------------------------
Confidence 348999999999999999999999 99999999999998865443
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEe
Q psy14497 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSAS 155 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~ 155 (561)
+|.+.++. ++.+...+.+++.|++++.++++-
T Consensus 166 ----------IP~~kl~k-------------~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 166 ----------IPDFKLPK-------------DILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred ----------Cchhhccc-------------hHHHHHHHHHHHcCeEEEEcceEC
Confidence 33333332 456667777888899999998774
No 229
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=98.50 E-value=1e-07 Score=80.22 Aligned_cols=57 Identities=23% Similarity=0.457 Sum_probs=46.9
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
.++.+.|+. ++.|+.+||.+++++.++ ...+.++...|+.||.|..+||.+||+++.
T Consensus 38 ~i~~~~Ci~------C~~C~~~CP~~ai~~~~~---~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 38 LYDVDKCVG------CRMCVTVCPAGVFVYLPE---IRKVALWTGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred EECcccCcC------cccHHHHCCccceEcccc---ccceEecCCcCcChhhhHHhCCcCcEEecc
Confidence 357789988 457999999999887642 135788999999999999999999998753
No 230
>KOG3923|consensus
Probab=98.49 E-value=6.5e-06 Score=77.27 Aligned_cols=293 Identities=10% Similarity=0.047 Sum_probs=140.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhc-cccCCCCCcEEEEcCCCCCCCce-eecceeChh----------------hHHhhc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQL-AIKKNKEIKICVLEKGSELGAHI-LSGAIIDPR----------------SIFELF 82 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~-~~~~~~G~~V~ViEk~~~~g~~~-~~G~~~~~~----------------~l~~l~ 82 (561)
+..+|+|||+|..||++|+.+.+. .+...|..+|+|++-+..+-... ...+.+.|. +...+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~ 81 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYLA 81 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCcHHHHHHHHHHHHHHHH
Confidence 567999999999999999888875 23346778999998776543221 122222222 111111
Q ss_pred cccc-cC-----------Ccccc-ccchhhhhhhcC-------CCCcccCCCCCC-ceeecCCcEEeeHHHHHHHHHHHH
Q psy14497 83 PKEK-LN-----------KLFNT-PVIEERFLFLSS-------KKSYKIPSWILP-ICFKNHGNYIISLSDLVRWMGKKA 141 (561)
Q Consensus 83 ~~~~-~~-----------~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~p-~~~~~~~~~~i~r~~l~~~L~~~a 141 (561)
..|. .. ..+.. ....++..+..+ -....+..+..+ ........|...-..++.+|.+.+
T Consensus 82 ~l~rs~~a~~aGV~l~sg~~ls~~e~~~~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~l 161 (342)
T KOG3923|consen 82 HLARSEEAGEAGVCLVSGHILSDSESLDDQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKRL 161 (342)
T ss_pred HHhccccccccceEEeeeeeeccCCCchhhhhhHHhhhhhhhcCCHHHhcCCCCccccceeEEEeeccchhhhHHHHHHH
Confidence 1111 00 00111 011111111110 000111111222 101122266777889999999999
Q ss_pred HHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHHHHHcCCCCCCC
Q psy14497 142 ENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDNKKD 221 (561)
Q Consensus 142 ~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~~~~ 221 (561)
.+.|+++. ..+|+++++- ..-++|+||.|+|..+. +| .-+....
T Consensus 162 ~e~Gvef~-~r~v~~l~E~----------------------------~~~~~DVivNCtGL~a~---~L----~gDd~~y 205 (342)
T KOG3923|consen 162 TENGVEFV-QRRVESLEEV----------------------------ARPEYDVIVNCTGLGAG---KL----AGDDDLY 205 (342)
T ss_pred HhcCcEEE-EeeeccHHHh----------------------------ccCCCcEEEECCccccc---cc----cCCccee
Confidence 99999884 3456555321 02578999999997665 22 1111111
Q ss_pred CccccceeEEE-EeeCCCccCCCcEEEEeccCCCCCCCceEEEEEcCCCeEEEEEEecCCCCCCCCChHHHHHHhhhChh
Q psy14497 222 PQTYSLGIKEL-WTINPKLHKKGLVIHTIGWPLDYKTYGGGFLYHMENNQISIGYIISLDYKNPYLSPFEEFQRYKTHPK 300 (561)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (561)
.++.. ..+ ....+.|...- + +...+++|. .+.+.+|-+...+..+.....++..+-+...-.
T Consensus 206 ------PiRGqVl~V-----~ApWvkhf~~~--D---~~~ty~iP~-~~~V~lGg~~Q~g~w~~ei~~~D~~dIl~rc~a 268 (342)
T KOG3923|consen 206 ------PIRGQVLKV-----DAPWVKHFIYR--D---FSRTYIIPG-TESVTLGGTKQEGNWNLEITDEDRRDILERCCA 268 (342)
T ss_pred ------eccceEEEe-----eCCceeEEEEe--c---CCccEEecC-CceEEEccccccCcccCcCChhhHHHHHHHHHH
Confidence 11111 111 12223343211 1 111367785 467777777665555555555554443332222
Q ss_pred HHHhhcCCeeeeecceeeccCCCccCC---ee-ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHh
Q psy14497 301 ICKILKGGKRISYGARTITTGGLQSLP---EF-IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKIC 371 (561)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~ 371 (561)
+.+-++..+.+.......|.-....+. .. ...+..+|=+-. ++|.|+.++...|.-++..+...+.
T Consensus 269 L~P~l~~a~ii~E~vGlRP~Rk~vRlE~e~~~~~~k~~~VVHnYG-----HgG~G~Tl~wGtAlea~~Lv~~~l~ 338 (342)
T KOG3923|consen 269 LEPSLRHAEIIREWVGLRPGRKQVRLEAELRTRGGKRLTVVHNYG-----HGGNGFTLGWGTALEAAKLVLDALG 338 (342)
T ss_pred hCcccccceehhhhhcccCCCCceeeeeeeecCCCccceeEeecc-----CCCCceecccchHHHHHHHHHHHhh
Confidence 333333333332111001100000000 01 112333344433 5788888888888888877766543
No 231
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=98.49 E-value=4.4e-08 Score=78.25 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=46.4
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeec-----------Cc----eeEEEEccCCCccCCcccccCCCCCeeE
Q psy14497 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEK-----------NK----IQHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~-----------~~----~~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
..+|.+.|+. ++.|+.+||.+++.+.... .+ ...+.+|.+.|+.||.|..+||.+||++
T Consensus 16 ~~i~~~~Ci~------C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~ 89 (91)
T TIGR02936 16 TSIDQEKCIG------CGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTH 89 (91)
T ss_pred EEECHhHCCC------cchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEec
Confidence 3468899988 4679999999998876310 00 1124689999999999999999999987
Q ss_pred E
Q psy14497 548 I 548 (561)
Q Consensus 548 ~ 548 (561)
.
T Consensus 90 ~ 90 (91)
T TIGR02936 90 A 90 (91)
T ss_pred C
Confidence 3
No 232
>KOG2665|consensus
Probab=98.48 E-value=6.7e-07 Score=84.22 Aligned_cols=173 Identities=21% Similarity=0.263 Sum_probs=103.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc--------eeecceeChhhHHhhcc--------
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH--------ILSGAIIDPRSIFELFP-------- 83 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~--------~~~G~~~~~~~l~~l~~-------- 83 (561)
..+||.||||||+.||+.|..|.-. .|+.+|.|+||....+-+ +++|.+..|..|..-+.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lr----hp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY 121 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLR----HPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLY 121 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhc----CCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHH
Confidence 4579999999999999999999888 789999999999876533 34555556654432111
Q ss_pred ccc--cCCccc------cccchhhhhhhcC-------CCCccc---CCCCC----Cc-----eeecCCcEEeeHHHHHHH
Q psy14497 84 KEK--LNKLFN------TPVIEERFLFLSS-------KKSYKI---PSWIL----PI-----CFKNHGNYIISLSDLVRW 136 (561)
Q Consensus 84 ~~~--~~~~~~------~~~~~~~~~~~~~-------~~~~~~---~~~~~----p~-----~~~~~~~~~i~r~~l~~~ 136 (561)
.+. ...+.. ..+...++..++. ++.-.+ ..+.+ |. .+..+..-+++.+.+...
T Consensus 122 ~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls 201 (453)
T KOG2665|consen 122 EYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLS 201 (453)
T ss_pred HHhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHH
Confidence 110 111111 1111112211111 000000 00000 00 011122456888999999
Q ss_pred HHHHHHHCCCEEEcCceEeEEEEcCCC-CEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHH
Q psy14497 137 MGKKAENMGIDIFSGFSASEILYDSKN-NVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQ 209 (561)
Q Consensus 137 L~~~a~~~Gv~i~~g~~v~~i~~~~~g-~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~ 209 (561)
+.+..+..|-++..+.++..+.++.++ .-.-+.+. + ..+.+++.+.||-|+|..|-....
T Consensus 202 ~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~------n-------gk~ee~r~~~~vtc~gl~sdr~aa 262 (453)
T KOG2665|consen 202 FGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVL------N-------GKGEEKRTKNVVTCAGLQSDRCAA 262 (453)
T ss_pred HHHHHHHhcccccccceeccchhccCCCCCCceEEe------c-------CccceeEEeEEEEeccccHhHHHH
Confidence 999998899999999999999765443 11112221 1 125689999999999988874333
No 233
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.48 E-value=7.3e-07 Score=90.81 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=33.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~ 65 (561)
.||+|||||+||+.+|+.|++. |++|+|||+++..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~------G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA------GVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC------CCcEEEEeccccccC
Confidence 4899999999999999999999 999999998876543
No 234
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.47 E-value=1e-06 Score=92.63 Aligned_cols=36 Identities=47% Similarity=0.748 Sum_probs=32.0
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~ 63 (561)
+|||||||+||+++|..|+++ +++.+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~----~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRL----NKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHH----CCCCcEEEEECCCcc
Confidence 699999999999999999998 445799999998765
No 235
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.45 E-value=4e-07 Score=99.64 Aligned_cols=40 Identities=28% Similarity=0.535 Sum_probs=36.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
...+|+|||||||||++|+.|++. |++|+|||+.+.+|+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~ 348 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGM 348 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCe
Confidence 468999999999999999999999 9999999999988663
No 236
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.45 E-value=8.1e-08 Score=78.21 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=45.9
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+|.+.|+. ++.|+.+||.+++.+.++ ....+|.+.|+.|+.|..+||.+||++.
T Consensus 47 ~~d~~~Ci~------C~~C~~~CP~~ai~~~~~----~~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 47 EFNRDKCVR------CYLCYIYCPEPAIYLDEE----GYPVFDYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred EEChhHCcC------hhhHHhhCCHhhEEecCC----CcEEECchhCCCcCchhhhcCcCcEEEe
Confidence 357889987 457999999999876542 2467899999999999999999999974
No 237
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.44 E-value=1.1e-06 Score=90.39 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=33.3
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
|+.+|||||||+||+++|..|++. ++..+|+||++.+.
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~----~~~~~Itvi~~~~~ 38 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQ----DAHIPITLITADSG 38 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEeCCCC
Confidence 456999999999999999999887 56789999998774
No 238
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=98.44 E-value=3.8e-08 Score=70.32 Aligned_cols=47 Identities=36% Similarity=0.587 Sum_probs=30.6
Q ss_pred ccccccccCCeeEEEEeecCcee----EEEEccCCCccCCcccccCCCCCe
Q psy14497 499 AGPEARYCPAGVYEFIIEKNKIQ----HLQINAQNCIHCKTCDIKDPTQNI 545 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~~~~~----~~~~~~~~C~~Cg~C~~~cp~~~i 545 (561)
++.|+.+||.+++++........ ....+.+.|++||.|..+||++||
T Consensus 5 Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 5 CGRCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TTHHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred cchHHHHCCccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 46799999999998866432110 001134589999999999999998
No 239
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.44 E-value=2.7e-07 Score=92.49 Aligned_cols=153 Identities=21% Similarity=0.318 Sum_probs=78.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHh-hccccccCCccccccchhh-
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFE-LFPKEKLNKLFNTPVIEER- 99 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~- 99 (561)
.+|+++||.||++|++|+.|.... .+++..||+.+...-+ .|-.+....|+- .+.++. .+..+.....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-----~~~~~f~e~~~~f~Wh--~gmll~~~~~q~~fl~Dlv---t~~~P~s~~sf 71 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-----DLKALFLERRPSFSWH--PGMLLPGARMQVSFLKDLV---TLRDPTSPFSF 71 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH--------EEEEES-SS--TT--GGG--SS-B-SS-TTSSSS---TTT-TTSTTSH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-----CCCEEEEecCCCCCcC--CccCCCCCccccccccccC---cCcCCCCcccH
Confidence 489999999999999999999982 4999999998876433 222221111110 111111 0001111111
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCC--CEEEEEeccccccc
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKN--NVCGIATNNFGINK 177 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g--~v~~V~~~~~~~~~ 177 (561)
..|+...+.+. . ..+.+....+|.++.++|.-.+++..-.+.++.+|++|...+++ ..+.|.+.+ .
T Consensus 72 lnYL~~~~rl~-~-------f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----~ 139 (341)
T PF13434_consen 72 LNYLHEHGRLY-E-------FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----S 139 (341)
T ss_dssp HHHHHHTT-HH-H-------HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----T
T ss_pred HHHHHHcCChh-h-------hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----c
Confidence 11222221110 0 00112344778888888888777766558899999999875443 356677632 1
Q ss_pred CCceecccccCeEEecCEEEEccCCC
Q psy14497 178 EGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 178 ~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
+| ++.++.|+.||.|.|..
T Consensus 140 ~g-------~~~~~~ar~vVla~G~~ 158 (341)
T PF13434_consen 140 DG-------DGETYRARNVVLATGGQ 158 (341)
T ss_dssp TS--------EEEEEESEEEE----E
T ss_pred CC-------CeeEEEeCeEEECcCCC
Confidence 22 24689999999999943
No 240
>PLN00071 photosystem I subunit VII; Provisional
Probab=98.41 E-value=1.1e-07 Score=74.04 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=46.4
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCce---eEEEEccCCCccCCcccccCCCCCeeEECCCCC
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKI---QHLQINAQNCIHCKTCDIKDPTQNIEWITPEGG 553 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~---~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g~ 553 (561)
++.+.|+. ++.|+.+||.+++++.+..+.. .....+.++|+.||.|..+||.+||++..-.|+
T Consensus 6 ~~~~~C~~------C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~~ 71 (81)
T PLN00071 6 KIYDTCIG------CTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGH 71 (81)
T ss_pred EcCCcCcC------hhHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeeeecc
Confidence 35678987 4679999999998875421111 112357899999999999999999998665443
No 241
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.41 E-value=7.5e-07 Score=94.18 Aligned_cols=39 Identities=33% Similarity=0.555 Sum_probs=35.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~ 65 (561)
...+|+||||||||+++|..|++. |++|+|||+.+.+|+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG 180 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGG 180 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCc
Confidence 457999999999999999999999 999999999987765
No 242
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=98.41 E-value=1.1e-07 Score=80.35 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=45.8
Q ss_pred cCCCCccccccccccc-----ccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 485 KNKKIPIHINFSIYAG-----PEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~-----~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++++.|+.| + .|+.+||.+++.+.++ +...+.++++.|++|+.|...||.+||++.
T Consensus 5 v~~~~C~gC------~~~~~~~Cv~~CP~~ai~~~~~--~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 65 (132)
T TIGR02060 5 VYPTKCDGC------KAGEKTACVYICPNDLMHLDTE--IMKAYNIEPDMCWECYSCVKACPQGAIDVR 65 (132)
T ss_pred EccccccCc------cCCchhcCHhhcCccceEecCC--CceeeecCchhCccHHHHHHhCCcCceEEE
Confidence 477889884 5 7999999999887542 113457899999999999999999999864
No 243
>KOG0042|consensus
Probab=98.41 E-value=3.3e-07 Score=92.32 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchhhHHH
Q psy14497 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQI 210 (561)
Q Consensus 131 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~l 210 (561)
.++.-.++=.|.+.|+.+....+|.++..++++++.|++..| ..+|+. .+|+|+.||.|+|..|---+++
T Consensus 224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD---~iTG~e-------~~I~Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 224 ARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARD---HITGKE-------YEIRAKVVVNATGPFSDSIRKM 293 (680)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEE---eecCcE-------EEEEEEEEEeCCCCccHHHHhh
Confidence 344555555566789999999999999988888888988866 334442 5799999999999887754554
No 244
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.40 E-value=2.8e-06 Score=89.86 Aligned_cols=40 Identities=48% Similarity=0.757 Sum_probs=35.1
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
+|||+||||||||+++|+.|++. |.+|+|+|+. ..|+...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~------G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL------GLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC------CCeEEEEecC-CCCCcee
Confidence 59999999999999999999999 9999999986 4555443
No 245
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=98.40 E-value=1.2e-07 Score=66.78 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=24.9
Q ss_pred EcCCCCcccccccccccccccccCC-eeEEEEeecCceeEEEEccCCCccCCcccccCC
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPA-GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDP 541 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~-~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp 541 (561)
++|.+.|+. ++.|+++||+ ....+... ...+.++.++|++||.|..+||
T Consensus 3 ~id~~~C~~------C~~C~~~CP~~~~~~~~~~---~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 3 VIDEDKCIG------CGRCVKVCPADNAIAIDDG---EKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp ---TT------------TTGGG-TT-----EEE----SSSEEE-TTT--TTSHHHHH-T
T ss_pred ccCcccCcC------CcChHHHccchhHHHhhcc---CCCeEeCcccccccChhhhhCc
Confidence 368899988 4679999999 34333332 2367889999999999999998
No 246
>KOG0029|consensus
Probab=98.39 E-value=3.6e-07 Score=95.62 Aligned_cols=45 Identities=33% Similarity=0.562 Sum_probs=41.0
Q ss_pred CCCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 18 RESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 18 ~~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
......+|+|||||+|||+||..|.+. |++|+|+|.++.+|+++.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~------G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDF------GFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHc------CCceEEEeccCCcCceeE
Confidence 445678999999999999999999999 999999999999998853
No 247
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.39 E-value=4.1e-06 Score=88.61 Aligned_cols=33 Identities=36% Similarity=0.683 Sum_probs=31.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~ 60 (561)
+|||+||||||||+.+|+.+++. |.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~------G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY------GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC------CCeEEEEecc
Confidence 58999999999999999999999 9999999974
No 248
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.38 E-value=2e-06 Score=90.79 Aligned_cols=53 Identities=17% Similarity=0.442 Sum_probs=40.7
Q ss_pred CcccEEEECchhHHHHHHHHHHh-ccccCCCCCcEEEEcCC--------CCCCCceeecceeChhhHH
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQ-LAIKKNKEIKICVLEKG--------SELGAHILSGAIIDPRSIF 79 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~-~~~~~~~G~~V~ViEk~--------~~~g~~~~~G~~~~~~~l~ 79 (561)
.+|||+||||||+|.++|+.+++ . |.+|+|+|+. ..+|+.-++-+.+..+.|.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~------g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~ 63 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLY------KKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMV 63 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhc------CCEEEEEecccCccccccCCccCeecCcCCccHHHHH
Confidence 46999999999999999999999 5 7999999984 3456654444455555543
No 249
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=98.38 E-value=2.4e-07 Score=75.52 Aligned_cols=62 Identities=19% Similarity=0.364 Sum_probs=47.6
Q ss_pred ceEEcCCCCcccccccccccccccccCCeeEEEEeecC---ceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 481 HLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN---KIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 481 h~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~---~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+...+|.+.|+. ++.|+.+||.+++++..... +.....++.+.|+.|+.|..+||.+||++.
T Consensus 9 ~~v~id~~~Ci~------C~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~~~C~~C~~C~~~CP~~AI~~~ 73 (103)
T PRK09626 9 TPVWVDESRCKA------CDICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPDFAIYVA 73 (103)
T ss_pred CCeEECcccccC------CcchhhhcChhhhccccccccccCceeeEeCCccCCCcCcchhhCChhhEEEe
Confidence 344458899988 46799999999988754311 112356789999999999999999999873
No 250
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.38 E-value=2.6e-07 Score=83.12 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=46.5
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14497 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 487 ~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
...|.+|. +-+|+.+||+++....+. + .-+.+|.+.||+||-|..+||++|..+..
T Consensus 66 ~~~C~HC~----~ppCv~vCPtgA~~k~~~-d--GiV~vd~d~CIGC~yCi~ACPyga~~~~~ 121 (203)
T COG0437 66 SISCMHCE----DPPCVKVCPTGALFKREE-D--GIVLVDKDLCIGCGYCIAACPYGAPQFNP 121 (203)
T ss_pred cccccCCC----CCcccccCCCcceEEecC-C--CEEEecCCcccCchHHHhhCCCCCceeCc
Confidence 35687866 689999999998766541 2 36999999999999999999999998855
No 251
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=98.38 E-value=1.1e-07 Score=80.96 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=44.8
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
++|.+.|+. ++.|+.+||.+++...+. ..+.++.+.|+.||.|..+||++||.+..
T Consensus 55 ~~d~~~Ci~------C~~C~~~CP~~ai~~~~~----~~~~i~~~~C~~Cg~Cv~vCP~~a~~l~~ 110 (133)
T PRK09625 55 VHNNEICIN------CFNCWVYCPDAAILSRDK----KLKGVDYSHCKGCGVCVEVCPTNPKSLLM 110 (133)
T ss_pred EEehhHCcC------hhhHHHhCCHhheEecCC----ceEEeCcCcCcChhHHHHHCCcCceEEEe
Confidence 357899988 457999999999765331 35678999999999999999999976443
No 252
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.37 E-value=1.9e-06 Score=90.90 Aligned_cols=38 Identities=37% Similarity=0.705 Sum_probs=33.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
.||+||||||+|+++|..|+++ |.+|+|+||.+ .|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~------g~~v~~~e~~~-~gG~c 39 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQL------GADVTVIERDG-LGGAA 39 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEEccC-CCCcc
Confidence 3899999999999999999999 99999999875 45543
No 253
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=98.37 E-value=3.6e-07 Score=70.52 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=45.6
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+++.+.|+. ++.|+.+||.+++.+..+ ....++.+.|+.|+.|..+||++||++.
T Consensus 21 ~i~~~~C~~------C~~C~~~Cp~~ai~~~~~----~~~~i~~~~C~~C~~C~~~CP~~Ai~~~ 75 (78)
T TIGR02179 21 VVDKEKCIK------CKNCWLYCPEGAIQEDEG----GFVGIDYDYCKGCGICANVCPVKAIEMV 75 (78)
T ss_pred EEcCCcCcC------hhHHHhhcCccceEecCC----CcEEecCccCcCccchhhhCCccccEec
Confidence 357789987 457999999999887532 2477899999999999999999999874
No 254
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.37 E-value=2.9e-06 Score=88.82 Aligned_cols=37 Identities=30% Similarity=0.608 Sum_probs=33.2
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g 64 (561)
+|||||||+||+++|..|+++ +++.+|+|+|+.+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~----~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh----CCCCCEEEEECCCCcc
Confidence 799999999999999999887 5689999999987653
No 255
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.36 E-value=5.2e-06 Score=85.98 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14497 130 LSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 130 r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
-+.|.+.|.+.+...|.+++.+++|.+|..++++++++|++.+ |++++|+.||.....
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---------------Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---------------GEVAKCKLVICDPSY 288 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---------------CcEEECCEEEECccc
Confidence 3578888888888899999999999999887667778888743 568999999985443
No 256
>PRK02651 photosystem I subunit VII; Provisional
Probab=98.36 E-value=2.2e-07 Score=72.30 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=47.6
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecC---ceeEEEEccCCCccCCcccccCCCCCeeEEC---CCC--CCCCC
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN---KIQHLQINAQNCIHCKTCDIKDPTQNIEWIT---PEG--GSGTN 557 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~---~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~---p~g--~~g~~ 557 (561)
..+.|+. ++.|+.+||.+++...+... +......+++.|+.|+.|..+||.++|++++ |+- .+|++
T Consensus 7 ~~~~Ci~------C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~ 80 (81)
T PRK02651 7 IYDTCIG------CTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLA 80 (81)
T ss_pred ccccCCC------cchHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEEEEeccceeeccccc
Confidence 4688988 45799999999987654211 1112345789999999999999999998543 443 34555
Q ss_pred C
Q psy14497 558 Y 558 (561)
Q Consensus 558 ~ 558 (561)
|
T Consensus 81 ~ 81 (81)
T PRK02651 81 Y 81 (81)
T ss_pred C
Confidence 4
No 257
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.35 E-value=4.2e-07 Score=96.15 Aligned_cols=41 Identities=39% Similarity=0.669 Sum_probs=38.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+.+||||||||+.||++|..|+++ |++|+|+||...+|+..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~------G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARA------GLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhC------CCEEEEEEecCCCCcce
Confidence 569999999999999999999999 99999999999998854
No 258
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=98.35 E-value=1.7e-07 Score=72.70 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=46.9
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecC---ceeEEEEccCCCccCCcccccCCCCCeeEECCCC
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN---KIQHLQINAQNCIHCKTCDIKDPTQNIEWITPEG 552 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~---~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g 552 (561)
++..+.|+. ++.|+.+||.+++++.+.+. +...+.++.+.|+.||.|...||.++|++++=.|
T Consensus 4 ~~~~~~Ci~------C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~ 69 (80)
T TIGR03048 4 VKIYDTCIG------CTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVYLG 69 (80)
T ss_pred eecCCcCcC------cchHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEEecC
Confidence 445688987 46799999999988764211 1112345779999999999999999999876544
No 259
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.35 E-value=2.3e-06 Score=90.26 Aligned_cols=48 Identities=27% Similarity=0.592 Sum_probs=37.5
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhH
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSI 78 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l 78 (561)
+|+||||||||+++|..|++. |.+|+|+||.+ .|+...+-+.+..+.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~------g~~V~lie~~~-~GG~c~n~gciPsk~l 49 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN------GKNVTLIDEAD-LGGTCLNEGCMPTKSL 49 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC------CCcEEEEECCc-ccccCCCCccccchHH
Confidence 799999999999999999999 99999999875 4554433334443443
No 260
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.34 E-value=2.4e-07 Score=91.58 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=49.8
Q ss_pred CceEEcCCCCcccc-cccccccccccccCC-----eeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee-EECCC
Q psy14497 480 IHLILKNKKIPIHI-NFSIYAGPEARYCPA-----GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE-WITPE 551 (561)
Q Consensus 480 ~h~~~~~~~~~~~~-~~~~~~~~c~~~CP~-----~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~-~~~p~ 551 (561)
.||.|.|.+.|.-. | +.-|+++||. .|++++++ . .+-++..+-|++||.|..+||++||+ .+.|+
T Consensus 3 ~riAvvd~D~C~PkkC----~~eC~~yCP~vrtg~~~I~i~~~-~--gkpvIsE~lCiGCGICvkkCPF~AI~IvnLP~ 74 (591)
T COG1245 3 MRIAVVDYDRCQPKKC----GYECIKYCPVVRTGKETIEIDED-T--GKPVISEELCIGCGICVKKCPFDAISIVNLPE 74 (591)
T ss_pred ceEEEeehhccCcccc----chhhhhcCCCccCCCeeEEecCC-C--CCceeEhhhhccchhhhccCCcceEEEecCch
Confidence 46777787777532 2 3569999995 57787654 2 25699999999999999999999998 55665
No 261
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.34 E-value=2.1e-07 Score=75.91 Aligned_cols=55 Identities=16% Similarity=0.327 Sum_probs=46.3
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.++.+.|+. ++.|+.+||.+++.+.++ ..+.+|.+.|..||.|...||.+||++.
T Consensus 47 ~i~~~~Ci~------C~~C~~~CP~~ai~~~~~----~~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09623 47 VVDESKCVK------CYICWKFCPEPAIYIKED----GYVAIDYDYCKGCGICANECPTKAITMV 101 (105)
T ss_pred EECcccCcc------ccchhhhCCHhheEecCC----CcEEeCchhCcCcchhhhhcCcCcEEec
Confidence 458899987 457999999999876542 2478999999999999999999999984
No 262
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.34 E-value=1.9e-05 Score=82.90 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=74.1
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||..|+-+|..|+++ |.+|+|+++++...
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~------G~~Vtlv~~~~~~~------------------------------------- 308 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRL------GAEVHCLYRRTRED------------------------------------- 308 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCEEEEEeecCccc-------------------------------------
Confidence 35899999999999999999999 99999999875310
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc---cccC
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG---INKE 178 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~---~~~~ 178 (561)
.+ . .....+.+++.||++++++.++++..++++++.+|.+.... .+.+
T Consensus 309 ---------~~-----~---------------~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~ 359 (449)
T TIGR01316 309 ---------MT-----A---------------RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDS 359 (449)
T ss_pred ---------CC-----C---------------CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCC
Confidence 00 0 01123455678999999999999976556777677654211 1123
Q ss_pred Ccee--cccccCeEEecCEEEEccCCC
Q psy14497 179 GIIK--KNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 179 g~~~--~~f~~g~~i~ad~vV~AdG~~ 203 (561)
|+.+ .......++.+|.||.|.|..
T Consensus 360 g~~~~~~~~~~~~~i~~D~Vi~AiG~~ 386 (449)
T TIGR01316 360 GERRFLPCGDAECKLEADAVIVAIGNG 386 (449)
T ss_pred CCeeeeecCCceEEEECCEEEECCCCC
Confidence 3211 111122468999999999953
No 263
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=98.34 E-value=3.9e-07 Score=82.22 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=47.7
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeec-CceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEK-NKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~-~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+|.+.|+. ++.|+.+||.+++.+..+. .+...+.++...|+.||.|..+||++||++.
T Consensus 35 ~d~~~Ci~------Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~ 93 (181)
T PRK08222 35 LMPSQCIA------CGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLT 93 (181)
T ss_pred eChhhCcc------hhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEec
Confidence 47889988 4679999999999876442 2334578899999999999999999999874
No 264
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=98.34 E-value=4.9e-08 Score=68.72 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=32.1
Q ss_pred ccccccccCCeeEEEEeec--CceeEEEEccCCCccCCcccccCCCCC
Q psy14497 499 AGPEARYCPAGVYEFIIEK--NKIQHLQINAQNCIHCKTCDIKDPTQN 544 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~--~~~~~~~~~~~~C~~Cg~C~~~cp~~~ 544 (561)
++.|+.+||.+++.+.+.. .+...+.+|.+.|++||.|..+||++|
T Consensus 5 C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 5 CGACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp --HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred cCchHHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 5679999999999987642 233578899999999999999999986
No 265
>KOG1335|consensus
Probab=98.34 E-value=4e-06 Score=81.21 Aligned_cols=47 Identities=43% Similarity=0.729 Sum_probs=41.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeeccee
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAII 73 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~ 73 (561)
.++||+|||+||.|-.+|+..+++ |++.+.+|++...|+.-++-+.+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl------GlkTacvEkr~~LGGTcLnvGcI 84 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL------GLKTACVEKRGTLGGTCLNVGCI 84 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh------cceeEEEeccCccCceeeecccc
Confidence 469999999999999999999999 99999999999988775544333
No 266
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.33 E-value=5.9e-06 Score=82.76 Aligned_cols=42 Identities=40% Similarity=0.567 Sum_probs=39.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
....||+|||||.|||++|+.|.+. |++|+|+|.++.+|++.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka------G~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA------GYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc------CcEEEEEeccCCcCcee
Confidence 4579999999999999999999999 99999999999998875
No 267
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.33 E-value=2.2e-06 Score=87.13 Aligned_cols=38 Identities=39% Similarity=0.530 Sum_probs=35.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCC
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGA 65 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~ 65 (561)
..+|+|||||+||+++|..|++. |++|+|+|+.+.+++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~~~gg 55 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL------GYEVHVYDKLPEPGG 55 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCcEEEEeCCCCCCc
Confidence 46999999999999999999999 999999999888765
No 268
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.33 E-value=4.4e-07 Score=86.84 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=47.8
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCC
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPE 551 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~ 551 (561)
..+..|..|. .-+|+.+||.+++...++ + ..+.+|.++|++|+.|..+||++||.+....
T Consensus 126 y~p~~C~hC~----nP~Cv~aCPtgAI~k~ee-d--GiV~ID~ekCiGCg~Cv~ACPygAi~~n~~~ 185 (321)
T TIGR03478 126 YLPRICNHCT----NPACLAACPTGAIYKREE-D--GIVLVDQERCKGYRYCVEACPYKKVYFNPQS 185 (321)
T ss_pred EecccCCCCC----CccchhhCCcCcEEEecC-C--CeEEECHHHCcchHHHHHhCCCCCcEecCCC
Confidence 5678898854 347999999999864432 2 3678999999999999999999999986443
No 269
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=98.32 E-value=4.8e-07 Score=90.05 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=49.0
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14497 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
....+..|..|. ..+|+.+||.+++...++ + ..+.+|.++|++|+.|..+||+++|.++.-
T Consensus 176 m~y~p~~C~HC~----nP~CV~ACPtGAI~k~ee-d--GiV~ID~dkCiGCg~CV~ACPygAI~~n~~ 236 (492)
T TIGR01660 176 MMYLPRLCEHCL----NPACVASCPSGAIYKREE-D--GIVLIDQDKCRGWRMCISGCPYKKIYFNWK 236 (492)
T ss_pred EEECCCcCcCCC----cccchhhCccCCeEEecC-C--CeEEEehhhccChHHHHHhCCCCCcEecCC
Confidence 345788998854 458999999999875432 2 257899999999999999999999998643
No 270
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.32 E-value=6.3e-06 Score=85.20 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=31.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~ 63 (561)
..+|+|||||+||+++|..|++. ++..+|+|+++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~----~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQ----GFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhh----CCCCCEEEeCCCCCC
Confidence 35899999999999999999998 223489999988654
No 271
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.31 E-value=1e-05 Score=82.23 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC-ch
Q psy14497 130 LSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR-GH 205 (561)
Q Consensus 130 r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~-S~ 205 (561)
-.+|.+.|.+.+++.|++++.+++|.++..+ ++++..|.+.+.+ ..+++||.+|+|+|++ |.
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~-------------~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHR-------------DIPLRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCc-------------cceEECCEEEEccCCCcCH
Confidence 3477888999999999999999999998865 5666777763310 1379999999999988 76
No 272
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=98.31 E-value=3.7e-07 Score=81.28 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=47.2
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
...+|.+.|+. ++.|+++||.+++...++ ....++.+.|+.||.|..+||++||++.
T Consensus 107 ~~~id~~~Ci~------Cg~C~~aCp~~ai~~~~~----~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 107 VALIDEDNCIG------CTKCIQACPVDAIVGAAK----AMHTVIADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred eEEEECCcCCC------hhHHHHhCCccceEecCC----CceEeecccccChhHHHHhcCcCceEee
Confidence 34568899988 467999999999876432 2467899999999999999999999985
No 273
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.31 E-value=4.2e-05 Score=79.81 Aligned_cols=98 Identities=26% Similarity=0.430 Sum_probs=68.9
Q ss_pred ccEEEECchhHHHHHHHHHHhcccc--------CCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccc
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIK--------KNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTP 94 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~--------~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~ 94 (561)
..|+|||||++|+-+|..|+...+. ..++.+|+|+|+.+.+-..
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~---------------------------- 225 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS---------------------------- 225 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc----------------------------
Confidence 3899999999999999999763211 0137899999987654110
Q ss_pred cchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14497 95 VIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
++ ..+.+.+.+.+++.||+++.+++|+++.. + .|.+
T Consensus 226 ---------------------~~-------------~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~---- 261 (424)
T PTZ00318 226 ---------------------FD-------------QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVL---- 261 (424)
T ss_pred ---------------------CC-------------HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEE----
Confidence 00 02445566667789999999999998852 2 2334
Q ss_pred cccCCceecccccCeEEecCEEEEccCCC
Q psy14497 175 INKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
++|.++.+|+||.|.|..
T Consensus 262 -----------~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 262 -----------KDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred -----------CCCCEEEccEEEEccCCC
Confidence 335689999999999954
No 274
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.30 E-value=4.8e-07 Score=87.01 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=49.5
Q ss_pred CceEE-cCCCCcccccccccccccccccCC-eeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14497 480 IHLIL-KNKKIPIHINFSIYAGPEARYCPA-GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 480 ~h~~~-~~~~~~~~~~~~~~~~~c~~~CP~-~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
.|+.. +..+.|.+|. ..+|+.+||+ ++|...++ ..+.+|.++|++|+.|..+||+++|+|...
T Consensus 82 ~~~~~~~~~~~C~hC~----~p~Cv~aCP~~gA~~~~~~----G~V~id~dkCigC~~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 82 DGLEWLIRKDGCMHCR----EPGCLKACPAPGAIIQYQN----GIVDFDHSKCIGCGYCIVGCPFNIPRYDKV 146 (283)
T ss_pred CCceEEECCccCCCCC----CccccCCCCcCCeEEEcCC----CcEEEeHHHCCcchHHHhhCCCCCcEEcCC
Confidence 45542 4667798865 4679999998 78765432 368899999999999999999999998643
No 275
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=1.2e-06 Score=88.89 Aligned_cols=145 Identities=23% Similarity=0.383 Sum_probs=79.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccc-cCCccccccch--h
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEK-LNKLFNTPVIE--E 98 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~-~~~~~~~~~~~--~ 98 (561)
.|||+|||||-||.-||+..+|. |.++.++--....-+.+.+--.+.-.+-..+..+.+ .+..+....+. .
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm------G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~I 77 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM------GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGI 77 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc------CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCC
Confidence 49999999999999999999999 999999875533211111100000000000000000 11111111111 1
Q ss_pred hhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHH-----HHH-CCCEEEcCceEeEEEEcCCCCEEEEEecc
Q psy14497 99 RFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKK-----AEN-MGIDIFSGFSASEILYDSKNNVCGIATNN 172 (561)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~-----a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 172 (561)
++..+....+ ......|.+.+++++.. ++. .++.++.+ .|+++..+++.+++||.+.+
T Consensus 78 Q~r~LN~sKG---------------PAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~ 141 (621)
T COG0445 78 QFRMLNSSKG---------------PAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD 141 (621)
T ss_pred chhhccCCCc---------------chhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC
Confidence 2222222111 13334455555555544 443 57777655 56777664333689999854
Q ss_pred cccccCCceecccccCeEEecCEEEEccCCC
Q psy14497 173 FGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 173 ~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
|..+.|+.||.++|..
T Consensus 142 ---------------G~~~~a~aVVlTTGTF 157 (621)
T COG0445 142 ---------------GPEFHAKAVVLTTGTF 157 (621)
T ss_pred ---------------CCeeecCEEEEeeccc
Confidence 6789999999999943
No 276
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=98.30 E-value=2.7e-07 Score=83.56 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=47.4
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeec-CceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEK-NKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~-~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+|.+.|+. ++.|+.+||.+++.+..+. .+...+.+|...|+.||.|..+||.+||+++
T Consensus 35 ~d~~~C~~------C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~ 93 (180)
T PRK12387 35 YNPQQCIG------CAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLS 93 (180)
T ss_pred EChhhCcC------hhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEcc
Confidence 47889988 4579999999998876532 2224567899999999999999999999875
No 277
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.30 E-value=2.3e-05 Score=80.70 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=51.2
Q ss_pred cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14497 125 NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 125 ~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S 204 (561)
...++...+.+.|.+.+.+ |++++++++|++++.+ ++. +.|++.+ |..+++|.||.|+|.++
T Consensus 129 ~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~---------------g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 129 GGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDAN---------------GEVIAASVVVLANGAQA 190 (381)
T ss_pred CcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCC---------------CCEEEcCEEEEcCCccc
Confidence 4467889999999999988 9999999999999864 333 5566632 44689999999999887
Q ss_pred h
Q psy14497 205 H 205 (561)
Q Consensus 205 ~ 205 (561)
.
T Consensus 191 ~ 191 (381)
T TIGR03197 191 G 191 (381)
T ss_pred c
Confidence 6
No 278
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.28 E-value=1.1e-05 Score=81.43 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=81.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccc-cccchhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFN-TPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~ 100 (561)
.++|+|||||++|+.+|.+|.+..+ +...|.|||+.+..|..+ .++...-..++..-....... .....+-.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~---~~~~Isi~e~~~~~G~Gi----aYs~~~p~~~lNv~a~~mS~~~pD~p~~F~ 73 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPR---PSGLISIFEPRPNFGQGI----AYSTEEPEHLLNVPAARMSAFAPDIPQDFV 73 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCC---CCCceEEeccccccCCCc----cCCCCCchhhhccccccccccCCCCchHHH
Confidence 3789999999999999999988732 233399999999886532 222111011111000001111 11223344
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH---CCC---EEEcCceEeEEEEcCCCCEEEEEecccc
Q psy14497 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN---MGI---DIFSGFSASEILYDSKNNVCGIATNNFG 174 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~---~Gv---~i~~g~~v~~i~~~~~g~v~~V~~~~~~ 174 (561)
.|+..... ....+....+.+.....|..|-.+|.+.... .+- -....++++++...+++..+.+.+
T Consensus 74 ~WL~~~~~----~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~---- 145 (474)
T COG4529 74 RWLQKQLQ----RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTT---- 145 (474)
T ss_pred HHHHhccc----ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEec----
Confidence 56654310 0011111112223335565565555555432 221 122344555555543444444444
Q ss_pred cccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 175 INKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 175 ~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
.+|....||.+|.|+|..-..
T Consensus 146 -----------~~g~~~~ad~~Vlatgh~~~~ 166 (474)
T COG4529 146 -----------ADGPSEIADIIVLATGHSAPP 166 (474)
T ss_pred -----------CCCCeeeeeEEEEeccCCCCC
Confidence 346788999999999955443
No 279
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=98.28 E-value=3.6e-07 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEccCCCccCCcccccCCCCCee
Q psy14497 523 LQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 523 ~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
+++|++.|++||.|...||.+||+
T Consensus 1 ~~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 1 PVIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEEETTTSSS-THHHHHSTTSSEE
T ss_pred CEEchHHCCCcchhhhhcccccCC
Confidence 468999999999999999999996
No 280
>PRK13984 putative oxidoreductase; Provisional
Probab=98.28 E-value=2.1e-06 Score=93.69 Aligned_cols=41 Identities=39% Similarity=0.496 Sum_probs=36.9
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
....+|+|||+||||+++|..|++. |++|+|||+.+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~ 321 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGV 321 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCce
Confidence 3467899999999999999999999 9999999999887653
No 281
>PRK12831 putative oxidoreductase; Provisional
Probab=98.28 E-value=3.2e-05 Score=81.37 Aligned_cols=111 Identities=21% Similarity=0.197 Sum_probs=74.2
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||..|+-+|..|+++ |.+|+|++++....
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~------Ga~Vtlv~r~~~~~------------------------------------- 317 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRL------GAEVHIVYRRSEEE------------------------------------- 317 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCEEEEEeecCccc-------------------------------------
Confidence 36899999999999999999999 99999998764310
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc---cccC
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG---INKE 178 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~---~~~~ 178 (561)
++ . .. ...+.+.+.||++++++.+.++..++++++.+|++.... .+.+
T Consensus 318 ---------m~-----a-------------~~--~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~ 368 (464)
T PRK12831 318 ---------LP-----A-------------RV--EEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDAS 368 (464)
T ss_pred ---------CC-----C-------------CH--HHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCC
Confidence 00 0 00 012334567999999999999976656777777654211 1223
Q ss_pred CceecccccC--eEEecCEEEEccCCCc
Q psy14497 179 GIIKKNFQLG--MELYAKYTLFAEGSRG 204 (561)
Q Consensus 179 g~~~~~f~~g--~~i~ad~vV~AdG~~S 204 (561)
|+......+| .++.+|.||.|.|...
T Consensus 369 Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p 396 (464)
T PRK12831 369 GRRRPVEIEGSEFVLEVDTVIMSLGTSP 396 (464)
T ss_pred CCccceecCCceEEEECCEEEECCCCCC
Confidence 4321111112 3689999999999543
No 282
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.28 E-value=2.3e-06 Score=86.22 Aligned_cols=66 Identities=24% Similarity=0.292 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 130 LSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 130 r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
-..+.+.|.+++.+ .+|+++.+..+.++..+++..+.||.+.+.+ ++ -.++.++.||.|+|.-+.+
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~----~~-------~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRN----GE-------LGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCC----Ce-------EEEEecCeEEEecCCCccc
Confidence 35788899999987 7999999999999887533245588874311 11 1578999999999988776
No 283
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.28 E-value=2.5e-07 Score=85.94 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=48.6
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCC
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPE 551 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~ 551 (561)
+|++.|.. |+.|.++|+-+|+.+.++ ..+.+|+..|=+||+|.+.||..||+.+.-.
T Consensus 66 i~~e~C~~------CG~C~~vC~f~Ai~~~~~----~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~ 122 (284)
T COG1149 66 IDPEKCIR------CGKCAEVCRFGAIVVLPG----GKPVLNPDLCEGCGACSIVCPEPAIEEEPVV 122 (284)
T ss_pred cChhhccc------cCcHHHhCCCCeEEEcCC----CceecCcccccCcccceeeCCCcccccccce
Confidence 67888988 467999999999887653 4799999999999999999999999875433
No 284
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.27 E-value=3e-06 Score=91.91 Aligned_cols=52 Identities=27% Similarity=0.483 Sum_probs=41.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC-CCCCCceeecceeChhhHH
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG-SELGAHILSGAIIDPRSIF 79 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~-~~~g~~~~~G~~~~~~~l~ 79 (561)
+|||+||||||+|.++|+.++++ |.+|+|+|+. ..+|+.-+.-+.+..+.|.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~------G~kV~lie~~~~~lGGtCvn~GCiPsK~l~ 168 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMER------GLKVIIFTGDDDSIGGTCVNVGCIPSKALL 168 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCccccceeEeCCcchHHHH
Confidence 68999999999999999999999 9999999975 3567765555555555443
No 285
>PRK07208 hypothetical protein; Provisional
Probab=98.27 E-value=9.7e-07 Score=93.83 Aligned_cols=42 Identities=33% Similarity=0.530 Sum_probs=39.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
++..||+|||||++||++|+.|+++ |++|+|+|+++.+|+..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~------g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR------GYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCcee
Confidence 4568999999999999999999999 99999999999998864
No 286
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.26 E-value=2.7e-06 Score=87.49 Aligned_cols=43 Identities=28% Similarity=0.331 Sum_probs=36.8
Q ss_pred CcccEEEECchhHHHHHHHHHH-hccccCCCCCcEEEEcCCCCCCCceee
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLK-QLAIKKNKEIKICVLEKGSELGAHILS 69 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La-~~~~~~~~G~~V~ViEk~~~~g~~~~~ 69 (561)
....|+|||||||||.+|..|+ +. |++|+||||.+.+++.+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~------g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHE------RVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc------CCeEEEEecCCCCccEEEE
Confidence 3578999999999999999764 66 9999999999999875543
No 287
>PRK06273 ferredoxin; Provisional
Probab=98.25 E-value=3.5e-07 Score=80.61 Aligned_cols=57 Identities=21% Similarity=0.301 Sum_probs=45.0
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCc--------eeEEEEccCCCccCCcccccCCCCCeeE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNK--------IQHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~--------~~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
++.+.|+. |+.|..+||.+++.+...++. ...+.+|.++|+.||.|..+||.+||..
T Consensus 46 id~~~Cig------Cg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 46 VFEELCIG------CGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred ECchhCcC------hhHHHHhcCccceeeecccccchhcccccccceecccccCcCCCCcchhCCHhheec
Confidence 47788988 457999999999987643210 1246889999999999999999999854
No 288
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.25 E-value=1.7e-05 Score=81.43 Aligned_cols=99 Identities=18% Similarity=0.292 Sum_probs=74.0
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
.+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+... .
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~------g~~Vtlv~~~~~~l~~--------------~--------------------- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA------GKAVTLVDNAASLLAS--------------L--------------------- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEecCCcccch--------------h---------------------
Confidence 5799999999999999999999 9999999987654110 0
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
++ ..+...+.+.+++.|++++++++++++..++ ..+.|.+
T Consensus 181 -------------~~-------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~------------ 220 (377)
T PRK04965 181 -------------MP-------------PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATL------------ 220 (377)
T ss_pred -------------CC-------------HHHHHHHHHHHHhCCCEEEECCeEEEEEccC--CEEEEEE------------
Confidence 00 0233456667777899999999999987542 2233444
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.+|.++.+|+||.|+|..+.
T Consensus 221 ---~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 221 ---DSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred ---cCCcEEECCEEEECcCCCcc
Confidence 34668999999999997664
No 289
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=98.22 E-value=6e-07 Score=81.09 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=43.7
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEee--c----CceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIE--K----NKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~--~----~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++.+.|+. |+.|+.+||.+++.+... . .....+.+|.+.|+.||.|..+||.+||+++
T Consensus 59 ~~~~kCi~------Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~ 122 (183)
T TIGR00403 59 FEFDKCIA------CEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMT 122 (183)
T ss_pred eCcccCcC------cCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeecc
Confidence 46788988 467999999997543210 0 0113577899999999999999999999874
No 290
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.22 E-value=6.5e-06 Score=84.22 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=33.3
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhc
Q psy14497 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICS 372 (561)
Q Consensus 330 ~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~ 372 (561)
..++++++||++...+....+-...|+..|..+|+.|...+.+
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcC
Confidence 4589999999997654333444567999999999999888754
No 291
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=98.21 E-value=1.3e-06 Score=77.99 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=42.9
Q ss_pred CCCcccccccccccccccccCCeeEEEEeec--Cce---eEEEEccCCCccCCcccccCCCCCeeE
Q psy14497 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEK--NKI---QHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 487 ~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~--~~~---~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
.+.|+. |+.|+.+||.+++.+.... ++. ..+.+|...|+.||.|..+||.+||++
T Consensus 57 ~~~Ci~------C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~ 116 (164)
T PRK05888 57 EERCIA------CKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVE 116 (164)
T ss_pred CccCCc------ccChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCccee
Confidence 348988 4679999999998765421 121 236689999999999999999999986
No 292
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.21 E-value=1.3e-05 Score=84.28 Aligned_cols=49 Identities=27% Similarity=0.502 Sum_probs=36.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHH
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIF 79 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~ 79 (561)
+|||+||||||+|.++|. +++ |.+|+|+|+.. .|+.-.+-+.+..+.|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~------g~~V~lie~~~-~GGtC~n~GCiPsK~l~ 50 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFA------DKRIAIVEKGT-FGGTCLNVGCIPTKMFV 50 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHC------CCeEEEEeCCC-CCCeeeccCccchHHHH
Confidence 599999999999998864 457 99999999854 56655554555555543
No 293
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.20 E-value=8.1e-05 Score=75.16 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=54.3
Q ss_pred CcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14497 124 GNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 124 ~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
....++...+...|.+.+.+.|++++.+++|+++..+ ++.+.+|.+.+ | +++||.||.|+|.+
T Consensus 130 ~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~---------------g-~~~a~~vV~a~G~~ 192 (337)
T TIGR02352 130 DDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPS---------------G-DVQADQVVLAAGAW 192 (337)
T ss_pred CCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCC---------------C-EEECCEEEEcCChh
Confidence 3556889999999999999999999999999999864 55566777632 3 79999999999987
Q ss_pred ch
Q psy14497 204 GH 205 (561)
Q Consensus 204 S~ 205 (561)
+.
T Consensus 193 ~~ 194 (337)
T TIGR02352 193 AG 194 (337)
T ss_pred hh
Confidence 65
No 294
>PRK06991 ferredoxin; Provisional
Probab=98.20 E-value=5.8e-07 Score=85.71 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=46.0
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+|.+.|+. |+.|+.+||.+++.+... ....++...|++||.|..+||.++|++.
T Consensus 81 ~id~~~Cig------Cg~Cv~aCP~~AI~~~~~----~~~~v~~~~CigCg~Cv~vCP~~AI~~~ 135 (270)
T PRK06991 81 VIDEQLCIG------CTLCMQACPVDAIVGAPK----QMHTVLADLCTGCDLCVPPCPVDCIDMV 135 (270)
T ss_pred EEccccCCC------CcHHHHhCCHhheecccc----cceeeCHhhCCCchHHHhhCCcCCeEee
Confidence 458899988 467999999999876532 2467889999999999999999999974
No 295
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.1e-06 Score=80.84 Aligned_cols=115 Identities=23% Similarity=0.419 Sum_probs=79.0
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...|||+||||||||.++|+..+|. |++.-|+- ...|+ .+++.-.++.++
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARK------GiRTGl~a--erfGG-----QvldT~~IENfI----------------- 258 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARK------GIRTGLVA--ERFGG-----QVLDTMGIENFI----------------- 258 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhh------cchhhhhh--hhhCC-----eeccccchhhee-----------------
Confidence 4569999999999999999999999 99876652 22333 333322222211
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcC-CCCEEEEEecccccccC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDS-KNNVCGIATNNFGINKE 178 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~~V~~~~~~~~~~ 178 (561)
..+. ..-.+|...|.+.+++..|++....++++++... .+....|+
T Consensus 259 ----------sv~~--------------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~--------- 305 (520)
T COG3634 259 ----------SVPE--------------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVE--------- 305 (520)
T ss_pred ----------cccc--------------ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEE---------
Confidence 0110 1123688889999999899998888888887532 23334444
Q ss_pred CceecccccCeEEecCEEEEccCCC
Q psy14497 179 GIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 179 g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
+++|..++++-||.++|++
T Consensus 306 ------l~nGavLkaktvIlstGAr 324 (520)
T COG3634 306 ------LANGAVLKARTVILATGAR 324 (520)
T ss_pred ------ecCCceeccceEEEecCcc
Confidence 4668899999999999964
No 296
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.19 E-value=1.4e-05 Score=76.12 Aligned_cols=178 Identities=21% Similarity=0.244 Sum_probs=92.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC--CCCce--eeccee--C-hh--------hHHhhccc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE--LGAHI--LSGAII--D-PR--------SIFELFPK 84 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~--~g~~~--~~G~~~--~-~~--------~l~~l~~~ 84 (561)
...+||+|||||.|||.+|..|+.. |.+|+|+|+..+ .|+.. .-|+.+ + |. .++-...+
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~a------G~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqD 76 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADA------GKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQD 76 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhc------CceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHh
Confidence 4579999999999999999999999 999999998754 33332 112222 1 21 11111223
Q ss_pred cccCCcccccc---------------chhhhhhhcCCCCcccC---------------CCCCCceeecCCcEEeeHHHHH
Q psy14497 85 EKLNKLFNTPV---------------IEERFLFLSSKKSYKIP---------------SWILPICFKNHGNYIISLSDLV 134 (561)
Q Consensus 85 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~---------------~~~~p~~~~~~~~~~i~r~~l~ 134 (561)
|.-...+.++- ..+.-.|+...+-..+| ...+|...-..+.----..-|.
T Consensus 77 W~gtA~FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFv 156 (552)
T COG3573 77 WFGTAAFDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFV 156 (552)
T ss_pred hhcccccCCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHH
Confidence 33111111111 11111222211111111 1122221111110000123567
Q ss_pred HHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccccc--ccCCceec-ccccCeEEecCEEEEccCCCc
Q psy14497 135 RWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGI--NKEGIIKK-NFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 135 ~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~--~~~g~~~~-~f~~g~~i~ad~vV~AdG~~S 204 (561)
+.+.+...+.-+++.+.++|..+..+ ++++.+|+-.-... ...|.+.. ......+++|..||.+.|.-.
T Consensus 157 r~~re~~~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIG 228 (552)
T COG3573 157 RRLREAQRRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIG 228 (552)
T ss_pred HHHHHHHhCCceEEEeeeeccceEee-CCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcC
Confidence 77777666666999999999999875 77787776421110 11122111 111224688999999987543
No 297
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=1.7e-06 Score=88.27 Aligned_cols=40 Identities=33% Similarity=0.507 Sum_probs=37.5
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~ 69 (561)
.|+|+|||+|||+||+.|+.+ |++|+|+|+++.+|++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~------g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA------GYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC------CCceEEEeccCccCceeee
Confidence 699999999999999999999 9999999999999988643
No 298
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.18 E-value=1.7e-06 Score=91.35 Aligned_cols=39 Identities=46% Similarity=0.695 Sum_probs=36.3
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCC--CcEEEEcCCCCCCCcee
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKE--IKICVLEKGSELGAHIL 68 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G--~~V~ViEk~~~~g~~~~ 68 (561)
+|+|||||+|||+||+.|++. | ++|+|||+++.+|+.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~------G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK------GPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh------CCCCCEEEEEcCCCCcceEE
Confidence 699999999999999999998 7 99999999999998754
No 299
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=98.18 E-value=6.6e-07 Score=81.34 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=46.6
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
...+|.+.|+. ++.|+++||.+++..... ....++.+.|+.||.|..+||++||++.
T Consensus 108 ~~~id~~~Ci~------Cg~Cv~aCp~~ai~~~~~----~~~~v~~~~C~~Cg~Cv~vCP~~AI~~~ 164 (191)
T PRK05113 108 VAFIDEDNCIG------CTKCIQACPVDAIVGATK----AMHTVISDLCTGCDLCVAPCPTDCIEMI 164 (191)
T ss_pred eeEEeCCcCCC------CChhhhhCCHhhhecccC----CceeecCCcCCchHHHHHHcCcCceEEe
Confidence 44568899988 467999999999765431 2467889999999999999999999885
No 300
>PRK07846 mycothione reductase; Reviewed
Probab=98.18 E-value=1.6e-05 Score=83.51 Aligned_cols=49 Identities=29% Similarity=0.504 Sum_probs=36.1
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHH
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIF 79 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~ 79 (561)
+|||+||||||+|.++|.. +. |.+|+|+|+.. .|+...+-+.+..+.|.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~------G~~V~lie~~~-~GGtC~n~GCiPsK~l~ 49 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA------DKRIAIVEKGT-FGGTCLNVGCIPTKMFV 49 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC------CCeEEEEeCCC-CCCcccCcCcchhHHHH
Confidence 4899999999999998865 56 99999999854 56654444444444443
No 301
>KOG0404|consensus
Probab=98.17 E-value=7.7e-06 Score=73.42 Aligned_cols=119 Identities=24% Similarity=0.334 Sum_probs=77.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...-+|+|||+|||+-++|+.+++. .++.+|||-.-.- + +..|+.+...+--+
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaara------elkPllfEG~~~~-~-i~pGGQLtTTT~ve------------------- 58 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARA------ELKPLLFEGMMAN-G-IAPGGQLTTTTDVE------------------- 58 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhc------ccCceEEeeeecc-C-cCCCceeeeeeccc-------------------
Confidence 3446899999999999999999999 9999999964321 1 11121111000000
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
.+|. +|. .+.-.+|.+.+.+++++-|.+|+.. .|.++... +....|.+
T Consensus 59 ----------NfPG--FPd--------gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~s--skpF~l~t--------- 106 (322)
T KOG0404|consen 59 ----------NFPG--FPD--------GITGPELMDKMRKQSERFGTEIITE-TVSKVDLS--SKPFKLWT--------- 106 (322)
T ss_pred ----------cCCC--CCc--------ccccHHHHHHHHHHHHhhcceeeee-ehhhcccc--CCCeEEEe---------
Confidence 0111 222 1344589999999999999999766 46666654 22333444
Q ss_pred ceecccccCeEEecCEEEEccCCCc
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S 204 (561)
+...+++|.||.|+|+..
T Consensus 107 -------d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 107 -------DARPVTADAVILATGASA 124 (322)
T ss_pred -------cCCceeeeeEEEecccce
Confidence 235799999999999653
No 302
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.17 E-value=6.3e-06 Score=92.22 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=68.8
Q ss_pred EEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhhhc
Q psy14497 25 VIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFLS 104 (561)
Q Consensus 25 VvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (561)
|||||||+||+++|..|++.. .++++|+|||+.+.+..... .+..+ +.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~---~~~~~Itvi~~e~~~~y~r~--------~L~~~---------------------l~ 48 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN---RHMFEITIFGEEPHPNYNRI--------LLSSV---------------------LQ 48 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC---CCCCeEEEEeCCCCCCcccc--------cccHH---------------------HC
Confidence 699999999999999998861 23689999999887643100 00000 00
Q ss_pred CCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecc
Q psy14497 105 SKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKN 184 (561)
Q Consensus 105 ~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~ 184 (561)
. .. ...++.....+..++.|++++.+++|+++..+ .+ .|.+.
T Consensus 49 g--~~-------------------~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~--~k--~V~~~------------- 90 (785)
T TIGR02374 49 G--EA-------------------DLDDITLNSKDWYEKHGITLYTGETVIQIDTD--QK--QVITD------------- 90 (785)
T ss_pred C--CC-------------------CHHHccCCCHHHHHHCCCEEEcCCeEEEEECC--CC--EEEEC-------------
Confidence 0 00 00011111223345679999999999998753 22 24442
Q ss_pred cccCeEEecCEEEEccCCCch
Q psy14497 185 FQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 185 f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+|.++.+|.||+|+|....
T Consensus 91 --~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 91 --AGRTLSYDKLILATGSYPF 109 (785)
T ss_pred --CCcEeeCCEEEECCCCCcC
Confidence 3568999999999997654
No 303
>PLN02268 probable polyamine oxidase
Probab=98.16 E-value=2e-06 Score=90.17 Aligned_cols=40 Identities=33% Similarity=0.617 Sum_probs=37.5
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
.+|+|||||+|||++|+.|.+. |++|+|+|+++.+|+++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~------g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDA------SFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCCCCCceee
Confidence 4799999999999999999999 999999999999998864
No 304
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=98.15 E-value=9.2e-07 Score=71.86 Aligned_cols=61 Identities=21% Similarity=0.403 Sum_probs=47.7
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
.++.+.|+. ++.|+.+||.+++++..+......+.++.+.|+.||.|..+||.+||++..-
T Consensus 25 ~~~~~~Ci~------Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~ 85 (99)
T COG1145 25 VIDAEKCIG------CGLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAEE 85 (99)
T ss_pred EeCccccCC------CCCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeehhhc
Confidence 356788988 4679999999998873321002478999999999999999999999886443
No 305
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.14 E-value=1.7e-06 Score=77.08 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=42.4
Q ss_pred ccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14497 499 AGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
++.|+.+||.+++.+.....+.....+|.++|++||.|..+||.+||+.+..
T Consensus 109 C~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~~C~gCg~C~~~CP~~AI~~~~~ 160 (163)
T PRK10194 109 CRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEYL 160 (163)
T ss_pred cCcchhhCCHhHeEeeecCCCcccceeCcccCcCcchhhhhCCccceEeccc
Confidence 5789999999999986533232346789999999999999999999998654
No 306
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.13 E-value=1.7e-06 Score=81.21 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=46.0
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++...|..|. ..+|+.+||.+++...++ . ..+.+|.+.|++|+.|..+||++||.+.
T Consensus 89 ~~~~~C~~C~----~~~Cv~~CP~gAi~~~~~-~--g~v~id~~~C~~C~~C~~aCP~~A~~~~ 145 (225)
T TIGR03149 89 FFRKSCQHCD----NAPCVAVCPTGASFKDEE-T--GIVDVHKDLCVGCQYCIAACPYRVRFIH 145 (225)
T ss_pred ECchhccCCc----CcChHhhCCCCcEEEeCC-C--CeEEechhhCCcchHHHHhCCCCCcEec
Confidence 4678898754 347999999999876532 1 2577999999999999999999999874
No 307
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=98.11 E-value=4e-07 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=21.4
Q ss_pred EEEccCCCccCCcccccCCCCCe
Q psy14497 523 LQINAQNCIHCKTCDIKDPTQNI 545 (561)
Q Consensus 523 ~~~~~~~C~~Cg~C~~~cp~~~i 545 (561)
+++|+++|++||.|..+||.+||
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChhHHHHhcchhcC
Confidence 57899999999999999999987
No 308
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.10 E-value=3.5e-05 Score=81.64 Aligned_cols=103 Identities=22% Similarity=0.334 Sum_probs=73.1
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~------g~~Vtli~~~~~il~~----------------------------------- 218 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADF------GVEVTVVEAADRILPT----------------------------------- 218 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCeEEEEEecCccCCc-----------------------------------
Confidence 46899999999999999999999 9999999987653110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. ...+.+.+.+.+++.||+++.+++|+++...+++.+..+.+.+ |+
T Consensus 219 ---------~------------------~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------g~- 264 (472)
T PRK05976 219 ---------E------------------DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------GE- 264 (472)
T ss_pred ---------C------------------CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC------Cc-
Confidence 0 0124445666667789999999999999642123333333321 11
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++.+|.||.|.|....
T Consensus 265 ------~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 265 ------EKTLEADKVLVSVGRRPN 282 (472)
T ss_pred ------eEEEEeCEEEEeeCCccC
Confidence 136899999999996544
No 309
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.10 E-value=1.5e-05 Score=89.39 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELG 64 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g 64 (561)
+.+|||||+|+||+.+|..|.+.. ..++++|+||++.+.+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~--~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKA--DAANFDITVFCEEPRIA 43 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhC--CCCCCeEEEEECCCCCc
Confidence 458999999999999999998651 12368999999988764
No 310
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.09 E-value=3.6e-06 Score=89.13 Aligned_cols=43 Identities=33% Similarity=0.560 Sum_probs=38.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCC--CCcEEEEcCCCCCCCcee
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNK--EIKICVLEKGSELGAHIL 68 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~--G~~V~ViEk~~~~g~~~~ 68 (561)
+.||+|||||+|||++|+.|++. .| |++|+|+|+++.+|+.+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~----~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKE----IPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhc----CCCCCCcEEEEEcCCcCcceEE
Confidence 36999999999999999999987 34 799999999999988753
No 311
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=98.09 E-value=7.4e-07 Score=88.56 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=46.2
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
+.+.|..||. ++.|+..||.+++++.++. +..++.+|.++|++||.|..+||.+||+
T Consensus 176 ~~~~~~~~c~---~~~Cv~~CP~~Ai~~~~~~-~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 176 NHEAVRNVCE---IPSVVAACPTGALKPRRDG-KNKSLEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred cHHHHHhhcC---CCceEeeCchhhceecccC-CCCceeeccccCCcCCchHHhCchhhcc
Confidence 3455666665 7899999999999985432 2246999999999999999999999985
No 312
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.09 E-value=1.6e-05 Score=83.00 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=32.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~ 63 (561)
.+.+|||||||.||+++|..|.+. +++|+|||+.+..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~------~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPK------KYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcC------CCeEEEEcCCCCc
Confidence 357999999999999999999766 8999999987753
No 313
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=98.09 E-value=2.1e-06 Score=72.67 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=43.2
Q ss_pred CCCcccccccccccccccccCCeeEEEEeec--Cce---eEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEK--NKI---QHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 487 ~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~--~~~---~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+.|+. ++.|+.+||.+++.+.... .+. ..+.++...|+.||.|..+||.++|+++
T Consensus 42 ~~~Ci~------C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~ 102 (122)
T TIGR01971 42 EEKCIG------CTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLT 102 (122)
T ss_pred cCcCcC------cchhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCcccccc
Confidence 378877 4579999999988765421 111 2467899999999999999999999764
No 314
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.08 E-value=3.8e-05 Score=86.18 Aligned_cols=111 Identities=25% Similarity=0.306 Sum_probs=80.1
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-.++|||||+.|+-+|..|++. |.+|+|+|+.+.+-.. .
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~------G~~VtvVe~~~~ll~~----------~------------------------- 184 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL------GVETHVIEFAPMLMAE----------Q------------------------- 184 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEeccccchhh----------h-------------------------
Confidence 4699999999999999999999 9999999987643110 0
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
++ ....+.|.+.+++.||+++.++.++++..+.++....|.+
T Consensus 185 --------ld------------------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~------------ 226 (847)
T PRK14989 185 --------LD------------------QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF------------ 226 (847)
T ss_pred --------cC------------------HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE------------
Confidence 00 0233456677778899999999999996532233334444
Q ss_pred cccccCeEEecCEEEEccCCCchhhHHHHHHcCCC
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLD 217 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~ 217 (561)
.+|.++.+|+||.|.|.+... .+.+..|+.
T Consensus 227 ---~dG~~i~~D~Vv~A~G~rPn~--~L~~~~Gl~ 256 (847)
T PRK14989 227 ---ADGSELEVDFIVFSTGIRPQD--KLATQCGLA 256 (847)
T ss_pred ---CCCCEEEcCEEEECCCcccCc--hHHhhcCcc
Confidence 456789999999999988774 244445543
No 315
>PLN02568 polyamine oxidase
Probab=98.08 E-value=4.4e-06 Score=89.00 Aligned_cols=48 Identities=29% Similarity=0.512 Sum_probs=38.8
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+++..||+|||||+|||++|..|++... ..+|++|+|+|++..+|+.+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~-~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSA-ANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccc-ccCCceEEEEeCCCCcCCeE
Confidence 3456899999999999999999998810 01139999999999998875
No 316
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.08 E-value=3.8e-06 Score=84.89 Aligned_cols=38 Identities=42% Similarity=0.657 Sum_probs=35.6
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
+||+|||||+|||++|+.|++. |.+|+|+|+++.+|+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~------G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL------NKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCCCCCc
Confidence 7999999999999999999999 9999999999888764
No 317
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.07 E-value=1e-06 Score=87.12 Aligned_cols=60 Identities=20% Similarity=0.432 Sum_probs=47.8
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.++|.+.|+. |+.|+.+||.+++.+.....+...+.++..+|+.||.|...||++||.+.
T Consensus 43 ~~~~~~~C~~------C~~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 102 (295)
T TIGR02494 43 LLFKENRCLG------CGKCVEVCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPSGALSIV 102 (295)
T ss_pred EEEccccCCC------CchhhhhCcccccccccccCCCcceeechhhcCchhHhhccCcHhHHhhh
Confidence 3468899998 46799999999987432212234688999999999999999999999873
No 318
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.07 E-value=0.00016 Score=76.38 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=71.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCC-cEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~-~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
.-.|+|||||..|+-+|..+.++ |. +|++++....+....
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~------ga~~Vt~~~~~~~~~~~~--------------------------------- 321 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQ------GAKSVTQRDIMPMPPSRR--------------------------------- 321 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCeEEEccccCCCcccc---------------------------------
Confidence 35799999999999999988888 75 788776554331100
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCc
Q psy14497 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGI 180 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~ 180 (561)
......+. + ....+.+.+.+.||++++++.++++.. +++++.+|++..... .+|.
T Consensus 322 ----------~~~~~~~~-------~------~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~-~~g~ 376 (471)
T PRK12810 322 ----------NKNNPWPY-------W------PMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTEL-GEGD 376 (471)
T ss_pred ----------ccccCCcc-------c------chHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEe-cCCC
Confidence 00000000 0 001134455678999999999999964 367777776543221 1121
Q ss_pred eecccccCeEEecCEEEEccCCCc
Q psy14497 181 IKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~S 204 (561)
....-....++.+|.||.|.|...
T Consensus 377 ~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 377 FEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred ccccCCceEEEECCEEEECcCcCC
Confidence 100001125789999999999543
No 319
>PRK08764 ferredoxin; Provisional
Probab=98.07 E-value=2e-06 Score=73.73 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=43.3
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
..+.+.|+. ++.|+++||.++++.... ....++.+.|+.||.|..+||++||+|+
T Consensus 81 ~~~~~~Ci~------C~~Cv~aCp~~ai~~~~~----~~~~v~~~~C~~Cg~Cv~~CP~~Ai~~~ 135 (135)
T PRK08764 81 WIVEADCIG------CTKCIQACPVDAIVGGAK----HMHTVIAPLCTGCELCVPACPVDCIELH 135 (135)
T ss_pred EECcccCcC------cchHHHhCChhhcCccCC----CceeecCCcCcCccchhhhcCccceEeC
Confidence 334578887 457999999999765321 2356788999999999999999999873
No 320
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.06 E-value=0.00028 Score=72.21 Aligned_cols=99 Identities=22% Similarity=0.353 Sum_probs=65.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
.+|+|||||++|+-+|..|++..++.....+|+|+ ..+.+...
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~------------------------------------ 188 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG------------------------------------ 188 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc------------------------------------
Confidence 48999999999999999998642211112578888 32211000
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
++ ..+...+.+.+++.||+++.+++++++.. + .|.+
T Consensus 189 -------------~~-------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~---~v~~------------ 224 (364)
T TIGR03169 189 -------------FP-------------AKVRRLVLRLLARRGIEVHEGAPVTRGPD---G---ALIL------------ 224 (364)
T ss_pred -------------CC-------------HHHHHHHHHHHHHCCCEEEeCCeeEEEcC---C---eEEe------------
Confidence 00 02334566667778999999999988742 2 2444
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++|.++.+|.||.|.|....
T Consensus 225 ---~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 225 ---ADGRTLPADAILWATGARAP 244 (364)
T ss_pred ---CCCCEEecCEEEEccCCChh
Confidence 23568999999999996643
No 321
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.06 E-value=4e-06 Score=89.40 Aligned_cols=63 Identities=8% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14497 130 LSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 130 r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
-..|.+.|.+.+++.|++|+++++|++|..+ ++++.+|.+.+.+ +| ++.++.||.||.+.-..
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~---~~-------~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSR---KQ-------EDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCC---CC-------ceEEEECCEEEECCCHH
Confidence 4578888999998899999999999999875 4555566653310 01 02478999999988764
No 322
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=98.06 E-value=1.5e-06 Score=82.27 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=46.1
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
+.+..|..|. .-+|+.+||.+++...++ ..+.+|++.|++|+.|..+||+++|++..
T Consensus 95 ~~~~~C~~C~----~p~Cv~~CP~~Ai~~~~~----G~v~id~~~CigC~~Cv~aCP~~Ai~~~~ 151 (244)
T PRK14993 95 LLPRLCNHCD----NPPCVPVCPVQATFQRED----GIVVVDNKRCVGCAYCVQACPYDARFINH 151 (244)
T ss_pred ecchhcCCcC----CccCccccCCCCEEECCC----CCEEEcHHHCCCHHHHHHhcCCCCCEEeC
Confidence 3467888754 347999999999765432 36889999999999999999999999854
No 323
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.05 E-value=4.1e-05 Score=80.99 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=73.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
..+|+|||||++|+.+|..|++. |.+|+|+|+.+.+...
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~----------------------------------- 208 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASL------GSKVTVIEMLDRILPG----------------------------------- 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCCCCCC-----------------------------------
Confidence 46899999999999999999999 9999999987653110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. ..++.+.+.+.+++.|++++.+++|+++..+ ++.+ .+.+.+ |+
T Consensus 209 ---------~------------------~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~------g~- 252 (461)
T TIGR01350 209 ---------E------------------DAEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQV-VYENKG------GE- 252 (461)
T ss_pred ---------C------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-EEEEeC------Cc-
Confidence 0 0134445667777789999999999999764 3322 244321 10
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++.+|.||.|.|..+.
T Consensus 253 ------~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 253 ------TETLTGEKVLVAVGRKPN 270 (461)
T ss_pred ------EEEEEeCEEEEecCCccc
Confidence 147899999999996654
No 324
>PRK13409 putative ATPase RIL; Provisional
Probab=98.04 E-value=2.5e-06 Score=91.91 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=48.3
Q ss_pred ceEEcCCCCcccc-cccccccccccccCC-----eeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee-EECCC
Q psy14497 481 HLILKNKKIPIHI-NFSIYAGPEARYCPA-----GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE-WITPE 551 (561)
Q Consensus 481 h~~~~~~~~~~~~-~~~~~~~~c~~~CP~-----~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~-~~~p~ 551 (561)
+|-|+|.+.|.-. | ..-|..+||. .|+++.++ .++..++++.|++||.|+.+||++||+ -+.|+
T Consensus 3 ~~~~~~~~~c~~~~c----~~~c~~~cp~~~~~~~~~~~~~~---~~~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p~ 73 (590)
T PRK13409 3 RIAVVDYDRCQPKKC----NYECIKYCPVVRTGEETIEIDED---DGKPVISEELCIGCGICVKKCPFDAISIVNLPE 73 (590)
T ss_pred eEEEeeccccCcchh----hhhHHhhCCCcccCCeEEEEcCC---CCCceeeHhhccccccccccCCcceEEEeeCch
Confidence 3556666666432 2 3469999995 57777543 247899999999999999999999998 66665
No 325
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=98.04 E-value=2.3e-06 Score=69.37 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=42.8
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeE
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
+.+.|+. ++.|+.+||.+++.+... +...+.++...|+.||.|..+||.++|+-
T Consensus 32 ~~~~C~~------C~~C~~~CP~~~i~~~~~--g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~ 85 (101)
T TIGR00402 32 FSAVCTR------CGECASACENNILQLGQQ--GQPTVEFDNAECDFCGKCAEACPTNAFHP 85 (101)
T ss_pred CcCcCcC------hhHHHHHcCcccceeccC--CceeeEecCccCcCccChhhHCCccccCc
Confidence 4467877 456999999999876532 22357889999999999999999999963
No 326
>PRK06370 mercuric reductase; Validated
Probab=98.03 E-value=5.5e-05 Score=79.94 Aligned_cols=102 Identities=23% Similarity=0.297 Sum_probs=73.1
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~~----------------------------------- 209 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRF------GSEVTVIERGPRLLPR----------------------------------- 209 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCCCcc-----------------------------------
Confidence 46899999999999999999999 9999999987654210
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.+ .++.+.+.+.+++.|++++++++|.++..++++..+.+...+
T Consensus 210 ---------~~------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~--------- 253 (463)
T PRK06370 210 ---------ED------------------EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNG--------- 253 (463)
T ss_pred ---------cC------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCC---------
Confidence 00 023345666677789999999999999764333222222111
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++.++.+|.||.|.|....
T Consensus 254 -----~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 254 -----GAPEITGSHILVAVGRVPN 272 (463)
T ss_pred -----CceEEEeCEEEECcCCCcC
Confidence 1347999999999996544
No 327
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.03 E-value=5e-05 Score=80.30 Aligned_cols=99 Identities=17% Similarity=0.270 Sum_probs=73.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~----------------------------------- 213 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAAL------GVKVTLINTRDRLLSF----------------------------------- 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCCc-----------------------------------
Confidence 46899999999999999999999 9999999987654110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
++ .++.+.|.+.+++.|++++++++|+++..++++ +.+.+
T Consensus 214 ---------~d------------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~----------- 253 (461)
T PRK05249 214 ---------LD------------------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG--VIVHL----------- 253 (461)
T ss_pred ---------CC------------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe--EEEEE-----------
Confidence 00 134455667777789999999999999754332 23333
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.+|.++++|.||.|.|....
T Consensus 254 ----~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 254 ----KSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred ----CCCCEEEeCEEEEeecCCcc
Confidence 22457999999999996644
No 328
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=98.03 E-value=2.4e-06 Score=81.88 Aligned_cols=60 Identities=10% Similarity=0.170 Sum_probs=44.5
Q ss_pred ceEEcCCCCcccccccccccccccccCCee-EEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 481 HLILKNKKIPIHINFSIYAGPEARYCPAGV-YEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 481 h~~~~~~~~~~~~~~~~~~~~c~~~CP~~~-~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+...|++.|+. |+.|+++||.++ ++..+.+ ..+..+|...|+.||.|..+||.+||+++
T Consensus 194 ~i~~~~~~~C~~------C~~C~~vCP~~~vl~~~~~~--~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 194 KIAASDREKCTN------CMDCFNVCPEPQVLRMPLKK--GGSTLVLSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred EEEeeccccCeE------cCCccCcCCCCceeeccccC--CCceEeccccccchhHHHHhCCccccccc
Confidence 334446789987 457999999985 3432211 12456788999999999999999999885
No 329
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.03 E-value=4.1e-05 Score=79.21 Aligned_cols=104 Identities=23% Similarity=0.344 Sum_probs=78.5
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
...-.++|||||+.|+=.|..++++ |.+|||+|+.+.+-. .+
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~L------G~~VTiie~~~~iLp------------------~~-------------- 212 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAAL------GSKVTVVERGDRILP------------------GE-------------- 212 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCC------------------cC--------------
Confidence 4567899999999999999999999 999999999876511 00
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCC
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEG 179 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g 179 (561)
+ .++.+.+.+.+++.|++++.+++++.++..+++ +.+.+.+ |
T Consensus 213 ------------D------------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~------g 254 (454)
T COG1249 213 ------------D------------------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLED------G 254 (454)
T ss_pred ------------C------------------HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEec------C
Confidence 0 145666777777778999999999999875443 4455432 1
Q ss_pred ceecccccCeEEecCEEEEccCCCchh
Q psy14497 180 IIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 180 ~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
+ +.++++|.|+.|.|+...+
T Consensus 255 ~-------~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 255 E-------GGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred C-------CCEEEeeEEEEccCCccCC
Confidence 1 1278999999999966553
No 330
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.02 E-value=5.7e-06 Score=84.66 Aligned_cols=41 Identities=32% Similarity=0.656 Sum_probs=36.5
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
.|+|||||+|||++|++|++. .|.++|+|||+.+..|+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~----~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA----GPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh----CCCCcEEEEecCCCCCceEE
Confidence 589999999999999999999 34499999999999988653
No 331
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.02 E-value=5.8e-05 Score=79.80 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=72.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~----------------------------------- 204 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARL------GSEVTILQRSDRLLPR----------------------------------- 204 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCcCCCc-----------------------------------
Confidence 36899999999999999999999 9999999987654110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.+ .++...+.+.+++.||+++++++|+++..+++ ...+.+.. ++
T Consensus 205 ---------~d------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~~~v~~~~-----~~-- 248 (463)
T TIGR02053 205 ---------EE------------------PEISAAVEEALAEEGIEVVTSAQVKAVSVRGG--GKIITVEK-----PG-- 248 (463)
T ss_pred ---------cC------------------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC--EEEEEEEe-----CC--
Confidence 00 02334456666678999999999999976422 23343321 00
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++.++.+|.||.|.|....
T Consensus 249 -----~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 249 -----GQGEVEADELLVATGRRPN 267 (463)
T ss_pred -----CceEEEeCEEEEeECCCcC
Confidence 1247999999999996544
No 332
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.01 E-value=6.6e-05 Score=78.81 Aligned_cols=98 Identities=21% Similarity=0.234 Sum_probs=71.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||++|+.+|..|++. |.+|+|+|+.+.+...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~----------------------------------- 195 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKL------GSKVTVLDAASTILPR----------------------------------- 195 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCccCCC-----------------------------------
Confidence 45799999999999999999999 9999999997654110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. ...+.+.+.+.+++.|++++.+++|+++..+ ++. +.+..
T Consensus 196 ---------~------------------~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~-v~v~~----------- 235 (438)
T PRK07251 196 ---------E------------------EPSVAALAKQYMEEDGITFLLNAHTTEVKND-GDQ-VLVVT----------- 235 (438)
T ss_pred ---------C------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCE-EEEEE-----------
Confidence 0 0123344556667789999999999999753 222 22222
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++.++.+|.||.|.|....
T Consensus 236 -----~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 236 -----EDETYRFDALLYATGRKPN 254 (438)
T ss_pred -----CCeEEEcCEEEEeeCCCCC
Confidence 1357999999999996544
No 333
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.00 E-value=6.1e-05 Score=84.42 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=78.0
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
..|+|||||+.|+-+|..|++. |.+|+|+|+.+.+-.. .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~------G~~Vtvv~~~~~ll~~--------------~--------------------- 179 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL------GMDVSVIHHAPGLMAK--------------Q--------------------- 179 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEccCCchhhh--------------h---------------------
Confidence 5799999999999999999999 9999999987543110 0
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
++ ..+.+.+.+.+++.||+++.++.++++.. ++.+.+|.+
T Consensus 180 --------ld------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~------------ 219 (785)
T TIGR02374 180 --------LD------------------QTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRF------------ 219 (785)
T ss_pred --------cC------------------HHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEE------------
Confidence 00 02334566667778999999999998864 344455555
Q ss_pred cccccCeEEecCEEEEccCCCchhhHHHHHHcCC
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNL 216 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~ 216 (561)
++|.++.+|+||.|.|..... .+.+..++
T Consensus 220 ---~dG~~i~~D~Vi~a~G~~Pn~--~la~~~gl 248 (785)
T TIGR02374 220 ---KDGSSLEADLIVMAAGIRPND--ELAVSAGI 248 (785)
T ss_pred ---CCCCEEEcCEEEECCCCCcCc--HHHHhcCC
Confidence 346789999999999987653 23433444
No 334
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.00 E-value=8.8e-05 Score=78.05 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=73.6
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-+|+|||||++|+-+|..|++. |.+|+++++.+.+-...
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~~----------------------------------- 188 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL------GKNVRIIQLEDRILPDS----------------------------------- 188 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCcEEEEeCCcccCchh-----------------------------------
Confidence 5799999999999999999999 99999998765431100
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
+ ..++.+.+.+.+++.|++++++++|+++.. ++.+..+.+.
T Consensus 189 -------------~-------------~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~----------- 229 (444)
T PRK09564 189 -------------F-------------DKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTD----------- 229 (444)
T ss_pred -------------c-------------CHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeC-----------
Confidence 0 013556677777788999999999999853 3444445442
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+.++.+|.||.|.|....
T Consensus 230 -----~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 230 -----KGEYEADVVIVATGVKPN 247 (444)
T ss_pred -----CCEEEcCEEEECcCCCcC
Confidence 237999999999997654
No 335
>PRK06116 glutathione reductase; Validated
Probab=98.00 E-value=7.6e-05 Score=78.63 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=74.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+++++.+.+...
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~------g~~Vtlv~~~~~~l~~----------------------------------- 205 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGL------GSETHLFVRGDAPLRG----------------------------------- 205 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCccc-----------------------------------
Confidence 46899999999999999999999 9999999987643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.+ .++.+.+.+.+++.|++++++++|.++..++++. +.|.+
T Consensus 206 ---------~~------------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~-~~v~~----------- 246 (450)
T PRK06116 206 ---------FD------------------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGS-LTLTL----------- 246 (450)
T ss_pred ---------cC------------------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCce-EEEEE-----------
Confidence 00 0244556667778899999999999997653432 23444
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.+|.++.+|.||.|.|....
T Consensus 247 ----~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 247 ----EDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred ----cCCcEEEeCEEEEeeCCCcC
Confidence 23567999999999996543
No 336
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.00 E-value=6.4e-05 Score=79.50 Aligned_cols=102 Identities=20% Similarity=0.286 Sum_probs=73.2
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~----------------------------------- 210 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASL------GAEVTIVEALPRILPG----------------------------------- 210 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCcCCc-----------------------------------
Confidence 35799999999999999999999 9999999987654110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. . .++.+.+.+.+++.||+++.+++|+++..+++ .+.+.+.+. |+
T Consensus 211 ---------~-----~-------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~v~v~~~~g-----g~- 255 (462)
T PRK06416 211 ---------E-----D-------------KEISKLAERALKKRGIKIKTGAKAKKVEQTDD--GVTVTLEDG-----GK- 255 (462)
T ss_pred ---------C-----C-------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC--EEEEEEEeC-----Ce-
Confidence 0 0 13445566667778999999999999976432 233443210 11
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++.+|.||.|.|....
T Consensus 256 ------~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 256 ------EETLEADYVLVAVGRRPN 273 (462)
T ss_pred ------eEEEEeCEEEEeeCCccC
Confidence 147899999999996543
No 337
>PLN02576 protoporphyrinogen oxidase
Probab=97.99 E-value=7.2e-06 Score=87.62 Aligned_cols=43 Identities=35% Similarity=0.489 Sum_probs=37.9
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
.++||+|||||++||++|+.|++.. |++|+|+|+++.+|+.+.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~-----g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKH-----GVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhc-----CCCEEEEecCCCCCCcee
Confidence 3469999999999999999999871 699999999999998754
No 338
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.99 E-value=6.6e-06 Score=87.06 Aligned_cols=45 Identities=33% Similarity=0.597 Sum_probs=36.2
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
+|+|||||+|||++|+.|++.....+.|++|+|+|+++.+|+.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 699999999999999999986100011489999999999998754
No 339
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.98 E-value=8.3e-05 Score=78.57 Aligned_cols=104 Identities=17% Similarity=0.248 Sum_probs=72.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~------G~~Vtlie~~~~il~~----------------------------------- 212 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRL------GAQVTVVEYLDRICPG----------------------------------- 212 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCCCCCC-----------------------------------
Confidence 46899999999999999999999 9999999987643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
++ .++.+.+.+.+++.||+++++++|+++..++++ +.+.+... .+|
T Consensus 213 ---------~d------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--v~v~~~~~---~~g-- 258 (466)
T PRK06115 213 ---------TD------------------TETAKTLQKALTKQGMKFKLGSKVTGATAGADG--VSLTLEPA---AGG-- 258 (466)
T ss_pred ---------CC------------------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCe--EEEEEEEc---CCC--
Confidence 00 023445666677789999999999999754333 22322110 011
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++.++.+|.||.|.|..+.
T Consensus 259 -----~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 259 -----AAETLQADYVLVAIGRRPY 277 (466)
T ss_pred -----ceeEEEeCEEEEccCCccc
Confidence 1347999999999996543
No 340
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.97 E-value=0.00024 Score=79.58 Aligned_cols=110 Identities=21% Similarity=0.264 Sum_probs=72.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
.-.|+|||||..|+-+|..|.+. |.+ |+|+++++...
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~------Ga~~Vtlv~r~~~~~------------------------------------ 607 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRL------GAERVTIVYRRSEEE------------------------------------ 607 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc------CCCeEEEeeecCccc------------------------------------
Confidence 35899999999999999999999 987 99998764310
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc---ccc
Q psy14497 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG---INK 177 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~---~~~ 177 (561)
++ . . . ...+.+.+.||++++++.+.++..++++++.+|++.... .+.
T Consensus 608 ----------~~-----~----------~---~--~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~ 657 (752)
T PRK12778 608 ----------MP-----A----------R---L--EEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDA 657 (752)
T ss_pred ----------CC-----C----------C---H--HHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCC
Confidence 00 0 0 0 011345668999999999999976656777777663211 112
Q ss_pred CCceeccc--ccCeEEecCEEEEccCCC
Q psy14497 178 EGIIKKNF--QLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 178 ~g~~~~~f--~~g~~i~ad~vV~AdG~~ 203 (561)
+|+..... ....++.+|.||.|.|..
T Consensus 658 ~G~~~~~~~~g~~~~i~~D~Vi~A~G~~ 685 (752)
T PRK12778 658 SGRRRPVAIPGSTFTVDVDLVIVSVGVS 685 (752)
T ss_pred CCCCCceecCCCeEEEECCEEEECcCCC
Confidence 33211111 112368999999999954
No 341
>KOG0399|consensus
Probab=97.96 E-value=1.9e-05 Score=85.79 Aligned_cols=43 Identities=30% Similarity=0.548 Sum_probs=38.7
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
.....|+|||+|||||++|-.|-+. |+.|+||||...+|+-+.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~------gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKA------GHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhc------CcEEEEEEecCCcCceee
Confidence 4568999999999999999999999 999999999999877443
No 342
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.96 E-value=5e-06 Score=79.15 Aligned_cols=74 Identities=16% Similarity=0.350 Sum_probs=52.1
Q ss_pred cCCCCcccccccccccccccccCC--eeEEEEeecC---c---eeEEEEccCCCccCCcccccCCCC--CeeEEC---CC
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPA--GVYEFIIEKN---K---IQHLQINAQNCIHCKTCDIKDPTQ--NIEWIT---PE 551 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~--~~~~~~~~~~---~---~~~~~~~~~~C~~Cg~C~~~cp~~--~i~~~~---p~ 551 (561)
+|.+.|..- ....++.|+++||. ++|++....+ + .....+|.+.|++||.|..+||++ ||+..+ -.
T Consensus 134 id~~~Ci~~-~~~~C~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~~~AI~v~p~~~~~ 212 (254)
T PRK09476 134 VDQENCLNF-QGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLEKAAIKVLPRSLAK 212 (254)
T ss_pred cchhhcccc-CCCchHHHhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCCcceEEEehhhhhc
Confidence 788999831 01115679999996 8998864321 1 123678999999999999999998 888633 23
Q ss_pred CCCCCCCC
Q psy14497 552 GGSGTNYP 559 (561)
Q Consensus 552 g~~g~~~~ 559 (561)
|..|-.|+
T Consensus 213 g~~g~~~~ 220 (254)
T PRK09476 213 GKLGHHYR 220 (254)
T ss_pred cccccCcc
Confidence 66666665
No 343
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.96 E-value=7.9e-06 Score=86.21 Aligned_cols=64 Identities=16% Similarity=0.031 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14497 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 131 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S 204 (561)
..+.+.|.+.+++.|++|+.+++|++|..++++.+++|++.+. +|+ ...++.+|.||.|...+.
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~----~~~------~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADG----EGQ------RRFEVTADAYVSAMPVDI 276 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecC----CCC------ceeEEECCEEEEcCCHHH
Confidence 3567778888878899999999999998766677878887431 010 001689999999987643
No 344
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.96 E-value=0.00012 Score=76.69 Aligned_cols=97 Identities=15% Similarity=0.253 Sum_probs=71.9
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-+|+|||||++|+-+|..|++. |.+|+++++.+.+....
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~~~~~----------------------------------- 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER------GKNVTLIHRSERILNKL----------------------------------- 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCcccCccc-----------------------------------
Confidence 5899999999999999999999 99999999876531000
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
+ + ..+.+.+.+.+++.||+++++++|.++.. ++.+ +.+.
T Consensus 177 --------~-----~-------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~----------- 215 (427)
T TIGR03385 177 --------F-----D-------------EEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFT----------- 215 (427)
T ss_pred --------c-----C-------------HHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEc-----------
Confidence 0 0 12344566667778999999999999864 2332 2332
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 216 ----~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 216 ----SGGVYQADMVILATGIKPN 234 (427)
T ss_pred ----CCCEEEeCEEEECCCccCC
Confidence 2458999999999997655
No 345
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=97.94 E-value=4.2e-06 Score=81.08 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=42.8
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++..|.+.|.. |+.|+++||.++.......+.+....++...|+.||.|..+||.+||+++
T Consensus 202 i~~~d~~~C~~------C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 202 VKAHDRQKCTR------CMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred cccCCcccCcc------cCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCccceeec
Confidence 33357889987 45799999998632210101111234788999999999999999999874
No 346
>PRK09898 hypothetical protein; Provisional
Probab=97.94 E-value=8.6e-06 Score=75.66 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=45.6
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+++..|..|. ..+|+.+||.+++...+. . ..+.+|.++|++|+.|..+||.++|.+.
T Consensus 118 ~~~~~C~~C~----~~~C~~~CP~gAi~~~~~-~--g~v~vd~~~CigC~~C~~aCP~~ai~~~ 174 (208)
T PRK09898 118 YTADTCRQCK----EPQCMNVCPIGAITWQQK-E--GCITVDHKRCIGCSACTTACPWMMATVN 174 (208)
T ss_pred EeCccCCCcc----CcchhhhCCcceEEeecc-C--CeEEeccccCCCcCcccccCCCCCCEec
Confidence 3567888753 358999999999876542 1 2578899999999999999999999874
No 347
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.94 E-value=0.00012 Score=76.97 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=73.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~il~~----------------------------------- 204 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGL------GSETHLVIRHERVLRS----------------------------------- 204 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCcc-----------------------------------
Confidence 46899999999999999999999 9999999988654110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
+ + .++.+.+.+.+++.||+++.++.|+++..+.++ ...|.+.
T Consensus 205 ---------~-----d-------------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~-~~~v~~~---------- 246 (450)
T TIGR01421 205 ---------F-----D-------------SMISETITEEYEKEGINVHKLSKPVKVEKTVEG-KLVIHFE---------- 246 (450)
T ss_pred ---------c-----C-------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCc-eEEEEEC----------
Confidence 0 0 024445666677789999999999999754333 2334442
Q ss_pred ecccccC-eEEecCEEEEccCCCch
Q psy14497 182 KKNFQLG-MELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g-~~i~ad~vV~AdG~~S~ 205 (561)
+| .++.+|.||.|.|....
T Consensus 247 -----~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 247 -----DGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred -----CCcEEEEcCEEEEeeCCCcC
Confidence 23 46999999999995544
No 348
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=97.93 E-value=3.2e-06 Score=79.00 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=43.7
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee--EE
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE--WI 548 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~--~~ 548 (561)
....|.. |+.|+.+||.++++..+ ...|+++.|+.|+-|-..||+++++ |.
T Consensus 191 ~e~kc~~------c~~cv~~cp~~Ai~~~~------~~~I~~~~ci~c~~c~~ac~~gav~~~W~ 243 (354)
T COG2768 191 VEEKCYD------CGLCVKICPVGAITLTK------VVKIDYEKCIGCGQCMEACPYGAVDQNWE 243 (354)
T ss_pred eeecccc------cchhhhhCCCcceeccc------ceeechhhccchhhhhhhccCcccccchh
Confidence 4577877 46799999999988653 5899999999999999999999986 74
No 349
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=0.00011 Score=77.76 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=72.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+-..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~------G~~Vtlv~~~~~~l~~----------------------------------- 210 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNY------GVDVTIVEFLDRALPN----------------------------------- 210 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCcCCc-----------------------------------
Confidence 35899999999999999999999 9999999976643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. -.++.+.+.+.+++.||+++++++|+++..+ ++ .+.+.+.. .+|+
T Consensus 211 ---------~------------------d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~----~~g~- 256 (466)
T PRK07818 211 ---------E------------------DAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GS-KVTVTVSK----KDGK- 256 (466)
T ss_pred ---------c------------------CHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CC-eEEEEEEe----cCCC-
Confidence 0 0124455666777889999999999999753 22 23343320 1121
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++.+|.||.|.|....
T Consensus 257 ------~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 257 ------AQELEADKVLQAIGFAPR 274 (466)
T ss_pred ------eEEEEeCEEEECcCcccC
Confidence 137999999999996544
No 350
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=97.93 E-value=3.7e-06 Score=75.03 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=42.3
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeec------CceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEK------NKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~------~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+.+.|+. |+.|+.+||.+++.+.... ..-..+.+|...|+.||.|..+||.+||++.
T Consensus 56 ~~~~~Ci~------Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~ 119 (167)
T CHL00014 56 FEFDKCIA------CEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMT 119 (167)
T ss_pred eccccCCC------cCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecC
Confidence 35678988 4679999999875432110 0002466788999999999999999999763
No 351
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.92 E-value=0.00012 Score=77.19 Aligned_cols=100 Identities=24% Similarity=0.321 Sum_probs=71.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~ll~~----------------------------------- 208 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRL------GTKVTIVEMAPQLLPG----------------------------------- 208 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCcc-----------------------------------
Confidence 35899999999999999999999 9999999987653110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. -.++.+.+.+.+++.||+++++++|+++..+ +..+.+... |+
T Consensus 209 ---------~------------------d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~--~~~v~~~~~-------g~- 251 (458)
T PRK06912 209 ---------E------------------DEDIAHILREKLENDGVKIFTGAALKGLNSY--KKQALFEYE-------GS- 251 (458)
T ss_pred ---------c------------------cHHHHHHHHHHHHHCCCEEEECCEEEEEEEc--CCEEEEEEC-------Cc-
Confidence 0 0134455666777789999999999998653 222222221 11
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++.+|.||.|.|....
T Consensus 252 ------~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 252 ------IQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred ------eEEEEeCEEEEecCCccC
Confidence 136899999999996544
No 352
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=97.90 E-value=5.6e-06 Score=75.28 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=43.5
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 487 ~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
...|..|. +.+|+.+||.+++...+ ..+.+|+++|++|+.|..+||.++|++.
T Consensus 55 ~~~C~~C~----~~~C~~~Cp~~ai~~~~-----~~v~i~~~~C~~C~~C~~~CP~~ai~~~ 107 (181)
T PRK10330 55 ATVCRQCE----DAPCANVCPNGAISRDK-----GFVHVMQERCIGCKTCVVACPYGAMEVV 107 (181)
T ss_pred CCcCcCcC----CcHHHHHcCcccEEccC-----CeEEeChhhCCCcchhhhhCCccCeEee
Confidence 45677754 45899999999987642 2477899999999999999999999874
No 353
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.90 E-value=0.00012 Score=76.91 Aligned_cols=97 Identities=22% Similarity=0.332 Sum_probs=71.7
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+-..
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~~----------------------------------- 204 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGL------GVQVTLIYRGELILRG----------------------------------- 204 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEeCCCCCcc-----------------------------------
Confidence 45799999999999999999999 9999999986643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
++ .++.+.+.+.+++.|++++++++|+++..++++ ..|.+.
T Consensus 205 ---------~d------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~---------- 245 (446)
T TIGR01424 205 ---------FD------------------DDMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLS---------- 245 (446)
T ss_pred ---------cC------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEc----------
Confidence 00 123344666677789999999999999764333 234332
Q ss_pred ecccccCeEEecCEEEEccCCC
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
+|.++.+|.||.|.|..
T Consensus 246 -----~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 246 -----HGEEIVADVVLFATGRS 262 (446)
T ss_pred -----CCcEeecCEEEEeeCCC
Confidence 24579999999999954
No 354
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.90 E-value=5.1e-05 Score=76.66 Aligned_cols=38 Identities=32% Similarity=0.592 Sum_probs=33.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
++..|||||||.+||.+|..|.+.. ++.+|+++|++..
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~----~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL----PDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC----CCCcEEEEeCCCc
Confidence 5678999999999999999999982 1599999999875
No 355
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.89 E-value=4e-06 Score=45.81 Aligned_cols=19 Identities=32% Similarity=0.959 Sum_probs=18.1
Q ss_pred EEEccCCCccCCcccccCC
Q psy14497 523 LQINAQNCIHCKTCDIKDP 541 (561)
Q Consensus 523 ~~~~~~~C~~Cg~C~~~cp 541 (561)
+.+|.++|++|++|..+||
T Consensus 3 ~~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACP 21 (22)
T ss_pred eEEccccccCchhHHHhhC
Confidence 7899999999999999998
No 356
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.88 E-value=0.00011 Score=76.29 Aligned_cols=102 Identities=24% Similarity=0.404 Sum_probs=77.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
..+|+|||+|++||.+|..|+++ |++|+|+|+.+.+++...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~------G~~v~l~e~~~~~~~~~~--------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR------GKKVTLIEAADRLGGQLL--------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEcccccchhhh---------------------------------
Confidence 47999999999999999999999 999999999988754210
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEE-EEecccccccCCc
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCG-IATNNFGINKEGI 180 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~-V~~~~~~~~~~g~ 180 (561)
. ..+.+.+.+..++.||+++.++.+.++....+..... +..
T Consensus 177 -----------------------~-----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~---------- 218 (415)
T COG0446 177 -----------------------D-----PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVG---------- 218 (415)
T ss_pred -----------------------h-----HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEE----------
Confidence 0 2455667777788899999999999997643221111 222
Q ss_pred eecccccCeEEecCEEEEccCCCch
Q psy14497 181 IKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.++..+.+|+++.+.|.+..
T Consensus 219 -----~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 219 -----IDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred -----eCCcEEEeeEEEEeeccccc
Confidence 23568999999999997664
No 357
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=97.88 E-value=6e-06 Score=85.03 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=48.7
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCCCCCCCCC
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPEGGSGTNY 558 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g~~g~~~ 558 (561)
.+|.+.|+.| +.|+..||.+++...+ ..+.++.+.|..|+.|...||.++|+. ......|..|
T Consensus 6 ~id~~~Ci~C------~~C~~~CP~~ai~~~~-----~~~~i~~~~C~~C~~C~~~CP~~AI~~-~~~~~~~~~~ 68 (411)
T TIGR03224 6 LIDPEICIRC------NTCEETCPIDAITHDD-----RNYVVKADVCNGCMACVSPCPTGAIDN-WRTMLRAKAY 68 (411)
T ss_pred eeCcccCcCc------cchhhhCCcccEeccC-----CceEeCcccCcCHHHHHhhcCccccee-cccccccccc
Confidence 3588999884 5799999999987643 246789999999999999999999984 2333344443
No 358
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.88 E-value=1.2e-05 Score=74.61 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=46.6
Q ss_pred cCCCCcccccccccccccccccCC--eeEEEEeecCc---eeEEEEccCCCccCCcccccCCCC--CeeEECC
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPA--GVYEFIIEKNK---IQHLQINAQNCIHCKTCDIKDPTQ--NIEWITP 550 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~--~~~~~~~~~~~---~~~~~~~~~~C~~Cg~C~~~cp~~--~i~~~~p 550 (561)
+|.+.|... ....++.|+++||. ++|++...... ....++|++.|++||.|..+||++ ||+...-
T Consensus 128 id~~~C~~~-~g~~C~~C~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~~~ 199 (213)
T TIGR00397 128 VGHETCLNY-KGLNCSICVRVCPIRGEAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVLPR 199 (213)
T ss_pred ECCCCcccC-CCCCcccchhhCCCCcceEEEecccccCCcccceEEecccCCCcchhhHhCCCCCCeEEEeeh
Confidence 578888731 11125789999998 78887542211 124688999999999999999976 7876443
No 359
>PRK07118 ferredoxin; Validated
Probab=97.87 E-value=6.1e-06 Score=79.79 Aligned_cols=54 Identities=26% Similarity=0.432 Sum_probs=45.5
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCC
Q psy14497 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPE 551 (561)
Q Consensus 487 ~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~ 551 (561)
...|+. ++.|+.+||.+++.+.+ ...++|+++|+.||.|..+||+++|.|...+
T Consensus 212 ~~~Ci~------Cg~Cv~~CP~~AI~~~~-----~~~vId~~~C~~Cg~C~~~CP~~AI~~~~~~ 265 (280)
T PRK07118 212 EVGCIG------CGKCVKACPAGAITMEN-----NLAVIDQEKCTSCGKCVEKCPTKAIRILNKP 265 (280)
T ss_pred cccccc------chHHHhhCCcCcEEEeC-----CcEEEcCCcCCCHHHHHHhCCccccEeeccc
Confidence 456776 46799999999999864 2578899999999999999999999986443
No 360
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.87 E-value=7e-06 Score=80.72 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=45.9
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
....|..|. +.+|+.+||.+++...++ . ..+.+|.+.|++|+.|..+||.++|++..
T Consensus 108 ~~~~C~hC~----~p~Cv~aCP~gAi~k~~~-~--g~V~id~dkCigCg~Cv~aCP~gai~~~~ 164 (328)
T PRK10882 108 IKKQCMHCV----DPNCVSVCPVSALTKDPK-T--GIVHYDKDVCTGCRYCMVACPFNVPKYDY 164 (328)
T ss_pred ccccCCCcC----chhhHhhCCCCCEEeccc-C--CcccCCHHHcCcccHHHHhCCccceeccc
Confidence 456788854 458999999999886542 1 25788999999999999999999998653
No 361
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=97.87 E-value=8.4e-06 Score=72.55 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=45.5
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14497 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 487 ~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
+..|..|. ...|+.+||.+++..... + ..+.+|++.|+.|+.|..+||.++|.|...
T Consensus 61 ~~~C~~C~----~~~C~~~CP~~ai~~~~~-~--~~~~i~~~~C~~C~~C~~aCP~~ai~~~~~ 117 (161)
T TIGR02951 61 SISCNHCA----DPACVKNCPTGAMYKREE-D--GLVLVDQDKCIGCRYCVWACPYGAPQYDPQ 117 (161)
T ss_pred CccCCCcC----CcchHHhCCCCCEEeecC-C--CcEEECHHhCCCchHHHhhCCCCCcEEcCC
Confidence 56787743 348999999999775421 1 368899999999999999999999999644
No 362
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=97.86 E-value=5.7e-06 Score=78.33 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=43.7
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
+|.+.|+. |+.|+.+||.+++.+.+. ...+|.+.|..||.|...||.+||+.
T Consensus 145 id~~~C~~------C~~C~~~CP~~ai~~~~~-----~~~i~~~~C~~Cg~C~~~CP~~AI~~ 196 (234)
T TIGR02700 145 IDRKRCKG------CGICVDACPRSAIDMVDG-----KAFIRLLKCVGCGKCKEACPYNAIHG 196 (234)
T ss_pred EChhHCcC------cchHHHhCCcccEEecCC-----ceEEchhhCCccchHHhhCCCCceec
Confidence 46788977 457999999999887542 46889999999999999999999974
No 363
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.86 E-value=0.00016 Score=76.35 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=72.5
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-.|+|||+|..|+-+|..|++. |.+|+|+|+.+.+....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~------g~~Vtli~~~~~~l~~~----------------------------------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL------GVKVTLVSSRDRVLPGE----------------------------------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCcCCCCC-----------------------------------
Confidence 5799999999999999999999 99999999876542100
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
+ ..+...+.+.+++.||+++.+++++++..++++ +.|.+.
T Consensus 217 ---------d------------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~----------- 256 (466)
T PRK07845 217 ---------D------------------ADAAEVLEEVFARRGMTVLKRSRAESVERTGDG--VVVTLT----------- 256 (466)
T ss_pred ---------C------------------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCE--EEEEEC-----------
Confidence 0 023345666667789999999999999754332 234432
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 257 ----~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 257 ----DGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred ----CCcEEEecEEEEeecCCcC
Confidence 3457999999999996544
No 364
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=97.85 E-value=6e-06 Score=82.04 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=43.4
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEE--eec--Cc----eeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFI--IEK--NK----IQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~--~~~--~~----~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++|.+.|+. |+.|+.+||.+++... ... .+ ...+.+|+..|..||.|..+||.+||++.
T Consensus 243 ~id~~~Ci~------C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 243 VIDHSKCIM------CRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred EECcccCcC------cccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEec
Confidence 458899988 4579999999986421 110 00 11345688999999999999999999983
No 365
>KOG1276|consensus
Probab=97.84 E-value=2.1e-05 Score=77.65 Aligned_cols=46 Identities=37% Similarity=0.554 Sum_probs=39.7
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceee
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILS 69 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~ 69 (561)
.+..+|+|||||++||++|+.|+++ .|...|+|+|+.+..|+-+.+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~----~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARL----GPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhc----CCCceEEEEecCCcccceeee
Confidence 4678999999999999999999999 445567779999999987665
No 366
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=2e-05 Score=74.95 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=36.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
.+|++|||||.+|+.+|..|+++ |.+|.|+||++.+|+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~------gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL------GKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc------CCEEEEEeccccCCCc
Confidence 48999999999999999999999 9999999999999875
No 367
>PLN02507 glutathione reductase
Probab=97.83 E-value=0.0002 Score=76.24 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=72.9
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+++.+.+-..
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~~l~~----------------------------------- 241 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGM------GATVDLFFRKELPLRG----------------------------------- 241 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEecCCcCcc-----------------------------------
Confidence 45899999999999999999999 9999999987643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
++ .++.+.+.+.+++.||+++.+++|+++..++++ +.|.+
T Consensus 242 ---------~d------------------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~----------- 281 (499)
T PLN02507 242 ---------FD------------------DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVIT----------- 281 (499)
T ss_pred ---------cC------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEE-----------
Confidence 00 134445666667789999999999999754222 23333
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.+|.++.+|.||.|.|....
T Consensus 282 ----~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 282 ----DHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred ----CCCcEEEcCEEEEeecCCCC
Confidence 23557999999999996644
No 368
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.82 E-value=1.9e-05 Score=83.38 Aligned_cols=38 Identities=34% Similarity=0.528 Sum_probs=35.4
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+|+|||||++||++|+.|++. |++|+|+|+.+.+|+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~------G~~v~v~E~~~~~GG~~ 38 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA------GHEVDIYESRSFIGGKV 38 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEEecCCCCcee
Confidence 589999999999999999999 99999999999988754
No 369
>PTZ00058 glutathione reductase; Provisional
Probab=97.82 E-value=0.00022 Score=76.43 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=72.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||..|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~------G~~Vtli~~~~~il~~----------------------------------- 275 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRL------GAESYIFARGNRLLRK----------------------------------- 275 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCcEEEEEeccccccc-----------------------------------
Confidence 46799999999999999999999 9999999987643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
++ .++.+.+.+.+++.||+++.++.|.++..++++.+. +...+
T Consensus 276 ---------~d------------------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~--------- 318 (561)
T PTZ00058 276 ---------FD------------------ETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSD--------- 318 (561)
T ss_pred ---------CC------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECC---------
Confidence 00 023345666677789999999999999754332222 22211
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++.++.+|.||.|.|....
T Consensus 319 -----~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 319 -----GRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred -----CCEEEECCEEEECcCCCCC
Confidence 1247999999999996544
No 370
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.81 E-value=2e-05 Score=75.11 Aligned_cols=36 Identities=31% Similarity=0.727 Sum_probs=33.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
|+|||+|||||.|||+||+.|+++ |.++.|+-+...
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~------Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQA------GKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhc------CCcEEEEeCChh
Confidence 789999999999999999999999 999999987643
No 371
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=97.81 E-value=1e-05 Score=80.31 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=43.1
Q ss_pred cCCCCcccccccccccccc--cccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCC
Q psy14497 485 KNKKIPIHINFSIYAGPEA--RYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPE 551 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~--~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~ 551 (561)
.+.+.|+.| +.|+ .+||.+++.. + ..+|.+.|++|+.|...||.+||+++.++
T Consensus 299 id~dkCi~C------g~C~~~~aCPt~AI~~--~------~~Id~~~Ci~CGaCV~aCP~~AI~~~~~~ 353 (391)
T TIGR03287 299 YNPERCENC------DPCLVEEACPVPAIKK--D------GTLNTEDCFGCGYCAEICPGGAFEVNLGS 353 (391)
T ss_pred EchhhCcCC------CCCcCCcCCCHhhEec--c------ceeChHhCcChHHHHhhCCccceEEeCCe
Confidence 577889874 5685 9999999762 1 25789999999999999999999986543
No 372
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.81 E-value=0.00022 Score=75.66 Aligned_cols=103 Identities=19% Similarity=0.259 Sum_probs=73.4
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~----------------------------------- 221 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRL------GAEVTILEALPAFLAA----------------------------------- 221 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCccCCc-----------------------------------
Confidence 36899999999999999999999 9999999987643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. -.++.+.+.+.+++.|++++.+++|+++..+++ . +.|...+ .+|+
T Consensus 222 ---------~------------------d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~-v~v~~~~----~~g~- 267 (475)
T PRK06327 222 ---------A------------------DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-G-VSVAYTD----ADGE- 267 (475)
T ss_pred ---------C------------------CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-E-EEEEEEe----CCCc-
Confidence 0 013444566666678999999999999976432 2 3344322 1121
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++.+|.||.|.|....
T Consensus 268 ------~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 268 ------AQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred ------eeEEEcCEEEEccCCccC
Confidence 136899999999996544
No 373
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.81 E-value=0.00021 Score=70.57 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=93.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHh-hccccc-cCCccccccch
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFE-LFPKEK-LNKLFNTPVIE 97 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~-l~~~~~-~~~~~~~~~~~ 97 (561)
+..+|++.||-||+-|++|+.|.... +.++..+||.+....| .|-.+...+|+- ++.++. ...|.+. -
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~-----~~~~lFLerkp~F~WH--pGmllegstlQv~FlkDLVTl~~PTs~---y 72 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHS-----GLKSLFLERKPDFSWH--PGMLLEGSTLQVPFLKDLVTLVDPTSP---Y 72 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhcccc-----CcceEEEecCCCCCcC--CCcccCCccccccchhhhccccCCCCc---h
Confidence 34699999999999999999999882 4889999999887543 333332222221 111111 1111111 0
Q ss_pred hhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEE--EEeccccc
Q psy14497 98 ERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCG--IATNNFGI 175 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~--V~~~~~~~ 175 (561)
.-+.++...+. +-.+. +...+.+.|.++.+++.=++... -.+++++.|++|..-+.+.... +.+.
T Consensus 73 SFLNYL~~h~R--Ly~Fl------~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~---- 139 (436)
T COG3486 73 SFLNYLHEHGR--LYEFL------NYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTA---- 139 (436)
T ss_pred HHHHHHHHcch--Hhhhh------hhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcC----
Confidence 11122322221 11111 23467788999988887777665 6789999999773222222222 4442
Q ss_pred ccCCceecccccCeEEecCEEEEccCCCchhhHH
Q psy14497 176 NKEGIIKKNFQLGMELYAKYTLFAEGSRGHLSKQ 209 (561)
Q Consensus 176 ~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~~~~ 209 (561)
++...+|+-||++.|..-.+...
T Consensus 140 -----------~~~~y~ar~lVlg~G~~P~IP~~ 162 (436)
T COG3486 140 -----------NGTVYRARNLVLGVGTQPYIPPC 162 (436)
T ss_pred -----------CCcEEEeeeEEEccCCCcCCChH
Confidence 24578999999999976665433
No 374
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.80 E-value=0.00017 Score=75.65 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=70.8
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-+|+|||||+.|+-+|..|++. |.+|+|+++.+.+...
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~~------------------------------------ 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER------GLHPTLIHRSDKINKL------------------------------------ 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEecccccchh------------------------------------
Confidence 5799999999999999999999 9999999987653110
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
++ .++.+.+.+.+++.||+++++++|+++.. . .|.+
T Consensus 187 --------~d------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~------------ 222 (438)
T PRK13512 187 --------MD------------------ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTF------------ 222 (438)
T ss_pred --------cC------------------HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEE------------
Confidence 00 12344566667778999999999998842 1 2333
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++|.++.+|.||.|.|....
T Consensus 223 ---~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 223 ---KSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred ---CCCCEEEeCEEEECcCCCcC
Confidence 23457899999999997654
No 375
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.80 E-value=0.0001 Score=74.48 Aligned_cols=102 Identities=25% Similarity=0.515 Sum_probs=72.3
Q ss_pred CcccEEEECchhHHHHHHHHHHhcccc-------CCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCcccc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIK-------KNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNT 93 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~-------~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~ 93 (561)
...+|+||||||.|.=+|-.|+..... ....++|+|+|+.+.+-..
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~--------------------------- 206 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM--------------------------- 206 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC---------------------------
Confidence 346899999999999999999766321 1124689999988764210
Q ss_pred ccchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccc
Q psy14497 94 PVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNF 173 (561)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~ 173 (561)
+++ ++.+...+.+++.||+++.++.|+++.. + +|.+.+
T Consensus 207 ----------------------~~~-------------~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~----~v~~~~- 244 (405)
T COG1252 207 ----------------------FPP-------------KLSKYAERALEKLGVEVLLGTPVTEVTP--D----GVTLKD- 244 (405)
T ss_pred ----------------------CCH-------------HHHHHHHHHHHHCCCEEEcCCceEEECC--C----cEEEcc-
Confidence 111 3455566667789999999999999964 2 344432
Q ss_pred ccccCCceecccccCe-EEecCEEEEccCCCch
Q psy14497 174 GINKEGIIKKNFQLGM-ELYAKYTLFAEGSRGH 205 (561)
Q Consensus 174 ~~~~~g~~~~~f~~g~-~i~ad~vV~AdG~~S~ 205 (561)
|. ++.++.+|-|.|.+..
T Consensus 245 --------------g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 245 --------------GEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred --------------CCeeEecCEEEEcCCCcCC
Confidence 33 5999999999996644
No 376
>PLN02676 polyamine oxidase
Probab=97.80 E-value=2.6e-05 Score=82.46 Aligned_cols=42 Identities=40% Similarity=0.567 Sum_probs=37.9
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCC-cEEEEcCCCCCCCce
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~-~V~ViEk~~~~g~~~ 67 (561)
...+||+|||||++||++|+.|++. |+ +|+|+|++..+|+.+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~------g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEA------GIEDILILEATDRIGGRM 66 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHc------CCCcEEEecCCCCCCCcc
Confidence 3468999999999999999999999 98 699999999888764
No 377
>KOG1336|consensus
Probab=97.80 E-value=0.00016 Score=72.79 Aligned_cols=102 Identities=23% Similarity=0.281 Sum_probs=81.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|++||+|..|+-+|-.|... +++|+++++.+.+=. +++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~------~~~VT~V~~e~~~~~--------------~lf------------------- 253 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSK------AKSVTVVFPEPWLLP--------------RLF------------------- 253 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhc------CceEEEEccCccchh--------------hhh-------------------
Confidence 46699999999999999999999 999999998876411 010
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. ..+-+...+..++.||+++.++.+.++..+++|++..|.+.+
T Consensus 254 ---------~-------------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d--------- 296 (478)
T KOG1336|consen 254 ---------G-------------------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD--------- 296 (478)
T ss_pred ---------h-------------------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc---------
Confidence 0 034455666667789999999999999988888988888844
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
|.++.||+||.+.|+.+.
T Consensus 297 ------g~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 297 ------GKTLEADLVVVGIGIKPN 314 (478)
T ss_pred ------CCEeccCeEEEeeccccc
Confidence 679999999999997655
No 378
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.79 E-value=0.00028 Score=76.75 Aligned_cols=116 Identities=17% Similarity=0.138 Sum_probs=73.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+... +
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~------G~eVTLIe~~~~ll~~------~---------------------------- 351 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTAL------GSEVVSFEYSPQLLPL------L---------------------------- 351 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhC------CCeEEEEeccCccccc------C----------------------------
Confidence 35799999999999999999999 9999999987754210 0
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHH-HHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCc
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKA-ENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGI 180 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a-~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~ 180 (561)
+ .++.+.+.+.. ++.||+++.++.|+++..++++..+.|.+.+...+.++.
T Consensus 352 ----------d------------------~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~ 403 (659)
T PTZ00153 352 ----------D------------------ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDG 403 (659)
T ss_pred ----------C------------------HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccc
Confidence 0 02333344433 357999999999999976533332334432110000000
Q ss_pred eecccccCeEEecCEEEEccCCCch
Q psy14497 181 IKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
....+.+..++.+|.||.|.|....
T Consensus 404 ~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 404 PKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred cccccccceEEEcCEEEEEECcccC
Confidence 0011112247999999999995533
No 379
>PLN02785 Protein HOTHEAD
Probab=97.78 E-value=0.00034 Score=75.47 Aligned_cols=36 Identities=39% Similarity=0.658 Sum_probs=32.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
...||++|||||.||+.+|..|++. .+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~~-------~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQN-------FSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhcC-------CcEEEEecCCC
Confidence 3469999999999999999999974 79999999864
No 380
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.77 E-value=1.8e-05 Score=82.28 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=46.5
Q ss_pred cCCCCcccccccccccccccccCCe---eEEEEeecCceeEEEEccCCCccCCcccccCCC-CCeeEECCCC
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAG---VYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPT-QNIEWITPEG 552 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~---~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~-~~i~~~~p~g 552 (561)
.|.+.|+. |+.|+.+||.+ ++.+.++ +...+.++.+.|+.||.|..+||. +||++..-..
T Consensus 339 ~~~~~C~~------C~~C~~~Cp~~~~~ai~~~~~--~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~~~ 402 (420)
T PRK08318 339 IDQDKCIG------CGRCYIACEDTSHQAIEWDED--GTRTPEVIEEECVGCNLCAHVCPVEGCITMGEVKF 402 (420)
T ss_pred ECHHHCCC------CCcccccCCCcchhheeeccC--CCceEEechhhCcccchHHhhCCCCCCEEEeccCC
Confidence 47789987 46799999975 5555332 224577899999999999999999 9998865443
No 381
>PLN02529 lysine-specific histone demethylase 1
Probab=97.77 E-value=3.3e-05 Score=84.45 Aligned_cols=42 Identities=40% Similarity=0.573 Sum_probs=38.2
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
....+|+|||||+|||++|..|++. |++|+|+|+++.+|+++
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~------g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSF------GFKVVVLEGRNRPGGRV 199 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHc------CCcEEEEecCccCcCce
Confidence 3568999999999999999999999 99999999998887764
No 382
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.77 E-value=0.00095 Score=76.58 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=73.1
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhh
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEER 99 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 99 (561)
..-+|+|||||..|+-+|..+.++ |.+ |+++.++....
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rl------Ga~~Vtiv~rr~~~e----------------------------------- 608 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRL------GAPTVRCVYRRSEAE----------------------------------- 608 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeecCccc-----------------------------------
Confidence 346899999999999999999999 875 77776543210
Q ss_pred hhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccc---cc
Q psy14497 100 FLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFG---IN 176 (561)
Q Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~---~~ 176 (561)
.+ . . ....+.+++.||++++++.+.++..+++|++.+|++.... .+
T Consensus 609 -----------m~-----a-------------~--~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d 657 (1006)
T PRK12775 609 -----------AP-----A-------------R--IEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPD 657 (1006)
T ss_pred -----------CC-----C-------------C--HHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccC
Confidence 00 0 0 0012345678999999999999976667788777764321 12
Q ss_pred cCCceecccc-cCeEEecCEEEEccCCCc
Q psy14497 177 KEGIIKKNFQ-LGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 177 ~~g~~~~~f~-~g~~i~ad~vV~AdG~~S 204 (561)
.+|+.+..-. ...++.+|.||.|-|...
T Consensus 658 ~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p 686 (1006)
T PRK12775 658 EKGRRKPMPTGEFKDLECDTVIYALGTKA 686 (1006)
T ss_pred CCCCccccCCCceEEEEcCEEEECCCcCC
Confidence 2332211111 113689999999999543
No 383
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.76 E-value=0.0016 Score=74.18 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=70.5
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||..|+-+|..+.++ |.+|+++.+++.. .
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~------Ga~Vtlv~rr~~~-~------------------------------------ 483 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRL------GGNVTIVYRRTKS-E------------------------------------ 483 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEEecCcc-c------------------------------------
Confidence 36899999999999999999999 9999999876421 0
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcC-CCCEEEEEecccc---ccc
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDS-KNNVCGIATNNFG---INK 177 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~~V~~~~~~---~~~ 177 (561)
.+ . ... ..+.+.+.|+++++++.++++..++ ++.+.++++..+. .+.
T Consensus 484 ---------mp-----a--------------~~~-e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~ 534 (944)
T PRK12779 484 ---------MP-----A--------------RVE-ELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDK 534 (944)
T ss_pred ---------cc-----c--------------cHH-HHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccC
Confidence 01 0 001 1222446799999999999987543 3356666543211 123
Q ss_pred CCceeccc-ccCeEEecCEEEEccCCC
Q psy14497 178 EGIIKKNF-QLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 178 ~g~~~~~f-~~g~~i~ad~vV~AdG~~ 203 (561)
+|+..... ....++.+|.||.|-|..
T Consensus 535 ~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 535 SGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred cCceeeecCCceEEEECCEEEEcCCcC
Confidence 34321111 112468999999999954
No 384
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.75 E-value=0.0086 Score=64.25 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=58.4
Q ss_pred EEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 126 YIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 126 ~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++...+...|.+.+.+.|++++++++|+++..+ ++.+++|++.+. .+|+ ..+++|+.||.|+|.++.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~---~~g~-------~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDH---KTGE-------EERIEAQVVINAAGIWAG 191 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEc---CCCc-------EEEEEcCEEEECCCcchH
Confidence 46889999999999999999999999999999874 566777776431 1111 247999999999998876
Q ss_pred hhHHHHHHcCC
Q psy14497 206 LSKQIIKKFNL 216 (561)
Q Consensus 206 ~~~~l~~~~g~ 216 (561)
.+.+..|.
T Consensus 192 ---~l~~~~g~ 199 (516)
T TIGR03377 192 ---RIAEYAGL 199 (516)
T ss_pred ---HHHHhcCC
Confidence 33333555
No 385
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.75 E-value=3.3e-05 Score=84.89 Aligned_cols=42 Identities=33% Similarity=0.517 Sum_probs=38.3
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
....+|+|||||+|||++|+.|++. |++|+|+|++..+|+++
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~------g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSM------GFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHC------CCcEEEEeccccCCCcc
Confidence 3468999999999999999999999 99999999999888764
No 386
>PRK14694 putative mercuric reductase; Provisional
Probab=97.75 E-value=0.00038 Score=73.67 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=71.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+++......
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~------g~~Vtlv~~~~~l~~------------------------------------ 215 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARL------GSRVTVLARSRVLSQ------------------------------------ 215 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEECCCCCCC------------------------------------
Confidence 35899999999999999999999 999999986421100
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
. ..++...+.+.+++.||+++.++.+.++..+ ++ .+.+.+.
T Consensus 216 ---------~------------------~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~-~~~v~~~---------- 256 (468)
T PRK14694 216 ---------E------------------DPAVGEAIEAAFRREGIEVLKQTQASEVDYN-GR-EFILETN---------- 256 (468)
T ss_pred ---------C------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CC-EEEEEEC----------
Confidence 0 0134455667777789999999999998754 22 2334332
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+.++.+|.||.|.|..+.
T Consensus 257 ------~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 257 ------AGTLRAEQLLVATGRTPN 274 (468)
T ss_pred ------CCEEEeCEEEEccCCCCC
Confidence 236999999999997655
No 387
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.74 E-value=3.3e-05 Score=85.46 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=35.1
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~ 63 (561)
.....+|+|||||||||++|+.|++. |++|+|||+.+..
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~------Gh~Vtv~E~~~i~ 418 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRS------GHNVTAIDGLKIT 418 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhC------CCeEEEEcccccc
Confidence 34578999999999999999999999 9999999987654
No 388
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.73 E-value=0.00033 Score=73.55 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=71.7
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------------------------------------ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF------GSKVTILEAASLFLPR------------------------------------ 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCC------------------------------------
Confidence 5899999999999999999999 9999999987543110
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
. . ..+.+.+.+.+++.||+++++++|+++..+ ++. +.+.+.
T Consensus 197 --------~-----~-------------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~-v~v~~~----------- 237 (441)
T PRK08010 197 --------E-----D-------------RDIADNIATILRDQGVDIILNAHVERISHH-ENQ-VQVHSE----------- 237 (441)
T ss_pred --------c-----C-------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEEc-----------
Confidence 0 0 133455667777889999999999999764 332 233331
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+ .++.+|.||.|.|....
T Consensus 238 ----~-g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 238 ----H-AQLAVDALLIASGRQPA 255 (441)
T ss_pred ----C-CeEEeCEEEEeecCCcC
Confidence 1 25889999999996654
No 389
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=97.73 E-value=1.1e-05 Score=80.28 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=41.5
Q ss_pred cCCCCcccccccccccccccccCC---eeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPA---GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~---~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
+|.+.|+. |+.|+++||. +++.+.+ .++.+|.+.|+.||.|..+||++||.
T Consensus 166 ~d~~~C~~------Cg~C~~~Cp~~a~~ai~~~~-----~~~~id~~~C~~Cg~Cv~~CP~~Al~ 219 (314)
T TIGR02912 166 YDADRCIG------CGACVKVCKKKAVGALSFEN-----YKVVRDHSKCIGCGECVLKCPTGAWT 219 (314)
T ss_pred eeCccCCc------chHHHHhcChhhcCceeccC-----CeEEeCCCcCcCcchhhhhCCHhhcc
Confidence 36788987 4679999997 4555532 36889999999999999999999986
No 390
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.72 E-value=3.1e-05 Score=74.35 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=36.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
...+|+|||+|++||++|+.|++. ++|||||.....|++.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-------hdVTLfEA~~rlGGha 46 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-------HDVTLFEADRRLGGHA 46 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-------cceEEEeccccccCcc
Confidence 457899999999999999999997 9999999999998873
No 391
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=97.71 E-value=8.2e-06 Score=83.06 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=44.1
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEE--eecCc-e------eEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFI--IEKNK-I------QHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~--~~~~~-~------~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+|.+.|+. |+.|+++||.+++... ....+ . ....+|.+.|+.||.|...||.+||++.
T Consensus 3 ~id~~kCi~------Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 3 VRDMSKCIG------CGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred EechhhCCc------ChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 357889988 4679999999987621 11111 1 1245889999999999999999999864
No 392
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.71 E-value=0.00037 Score=73.70 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=72.2
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|+... ..|.+|+|+|+.+.+...
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~---~~G~~Vtli~~~~~il~~----------------------------------- 228 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYK---PRGGKVTLCYRNNMILRG----------------------------------- 228 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhc---cCCCeEEEEecCCccccc-----------------------------------
Confidence 367999999999999997654321 118999999987654110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
++ .++.+.+.+.+++.|+++++++.++++..++++ ...|.+.
T Consensus 229 ---------~d------------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~---------- 270 (486)
T TIGR01423 229 ---------FD------------------STLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFE---------- 270 (486)
T ss_pred ---------cC------------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEc----------
Confidence 00 134455667777889999999999999764333 2334442
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 271 -----~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 271 -----SGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred -----CCCEEEcCEEEEeeCCCcC
Confidence 2457999999999996654
No 393
>PLN02487 zeta-carotene desaturase
Probab=97.71 E-value=4e-05 Score=81.93 Aligned_cols=41 Identities=24% Similarity=0.445 Sum_probs=37.4
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
...+|+|||||++||++|+.|++. |++|+|+|+.+.+|+..
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~------g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC------CCeeEEEecCCCCCCce
Confidence 346999999999999999999999 99999999999988654
No 394
>KOG2311|consensus
Probab=97.71 E-value=0.00012 Score=73.22 Aligned_cols=35 Identities=31% Similarity=0.600 Sum_probs=32.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCC
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKG 60 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~ 60 (561)
+..|||||||||-||.-+|.+.++. |-+.+++-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~------Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL------GARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc------CCceEEeecc
Confidence 5679999999999999999999999 9999988765
No 395
>PRK07846 mycothione reductase; Reviewed
Probab=97.70 E-value=0.00048 Score=72.40 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=69.1
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+-..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~~ll~~----------------------------------- 204 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSAL------GVRVTVVNRSGRLLRH----------------------------------- 204 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCccccc-----------------------------------
Confidence 46899999999999999999999 9999999987653110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.+ .++.+.+.+ ..+.|++++.+++++++..+ ++. +.|.+.
T Consensus 205 ---------~d------------------~~~~~~l~~-l~~~~v~i~~~~~v~~i~~~-~~~-v~v~~~---------- 244 (451)
T PRK07846 205 ---------LD------------------DDISERFTE-LASKRWDVRLGRNVVGVSQD-GSG-VTLRLD---------- 244 (451)
T ss_pred ---------cC------------------HHHHHHHHH-HHhcCeEEEeCCEEEEEEEc-CCE-EEEEEC----------
Confidence 00 012222332 22468999999999999754 222 234432
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 245 -----~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 245 -----DGSTVEADVLLVATGRVPN 263 (451)
T ss_pred -----CCcEeecCEEEEEECCccC
Confidence 3458999999999996544
No 396
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.70 E-value=0.00049 Score=72.75 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=71.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~----------------------------------- 207 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRL------GVKVTVFERGDRILPL----------------------------------- 207 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCcCcc-----------------------------------
Confidence 46899999999999999999999 9999999987654210
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.+ .++.+.+.+.+++. +++++++++.++..+++ ..+.+...+ +
T Consensus 208 ---------~d------------------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~~~~------~-- 250 (460)
T PRK06292 208 ---------ED------------------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKVEELEKG------G-- 250 (460)
T ss_pred ---------hh------------------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEEEcC------C--
Confidence 00 12344566666677 99999999999975422 122222211 1
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++.++.+|.||.|.|....
T Consensus 251 -----~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 251 -----KTETIEADYVLVATGRRPN 269 (460)
T ss_pred -----ceEEEEeCEEEEccCCccC
Confidence 1347999999999996443
No 397
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.70 E-value=3.7e-05 Score=79.09 Aligned_cols=35 Identities=31% Similarity=0.757 Sum_probs=33.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~ 61 (561)
|++||+|||+|+||+++|+.|++. |.+|+|+|+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~------g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEA------GKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC------CCcEEEEECCC
Confidence 679999999999999999999999 99999999874
No 398
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.69 E-value=0.00046 Score=73.47 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=70.3
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-+|+|||||+.|+-+|..|++. |.+|+|+++.... ..
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~~l-~~------------------------------------ 219 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL------GFDVTVAVRSIPL-RG------------------------------------ 219 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCccc-cc------------------------------------
Confidence 4799999999999999999999 9999999863211 00
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
+ + .++.+.+.+.+++.||+++.++.+.++...+ +. ..|.+
T Consensus 220 --------~-----d-------------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~------------ 259 (499)
T PTZ00052 220 --------F-----D-------------RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLF------------ 259 (499)
T ss_pred --------C-----C-------------HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEE------------
Confidence 0 0 0233456666777899999999998887542 22 23443
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.+|.++.+|.||.|.|....
T Consensus 260 ---~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 260 ---SDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred ---CCCCEEEcCEEEEeeCCCCC
Confidence 23457899999999996544
No 399
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.68 E-value=0.00042 Score=73.34 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=71.5
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~il~~------------------------------------ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL------GSEVDVVEMFDQVIPA------------------------------------ 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCCEEEEecCCCCCCc------------------------------------
Confidence 5899999999999999999999 9999999987654110
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
. . .++.+.+.+.+++. ++++.++.|+++..++++ +.+.+.+. +|
T Consensus 213 --------~-----d-------------~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~~----~~--- 256 (471)
T PRK06467 213 --------A-----D-------------KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG--IYVTMEGK----KA--- 256 (471)
T ss_pred --------C-----C-------------HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE--EEEEEEeC----CC---
Confidence 0 0 02334455556566 999999999999754332 33443210 11
Q ss_pred cccccCeEEecCEEEEccCCCchh
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
...++.+|.||.|.|.....
T Consensus 257 ----~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 257 ----PAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred ----cceEEEeCEEEEeecccccC
Confidence 02469999999999976553
No 400
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.66 E-value=2.2e-05 Score=90.49 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=45.6
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEee----------------------cCceeEEEEccCCCccCCcccccC
Q psy14497 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIE----------------------KNKIQHLQINAQNCIHCKTCDIKD 540 (561)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~----------------------~~~~~~~~~~~~~C~~Cg~C~~~c 540 (561)
-+.+.+.|+. |+.|+.+||.+++..... ......+.++.+.|++||.|..+|
T Consensus 678 p~~~~~~Ci~------Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~C 751 (1165)
T TIGR02176 678 PVWVPDNCIQ------CNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDIC 751 (1165)
T ss_pred ceeccccCCC------ccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhc
Confidence 3457889988 467999999999875210 000124678999999999999999
Q ss_pred CCC--CeeEEC
Q psy14497 541 PTQ--NIEWIT 549 (561)
Q Consensus 541 p~~--~i~~~~ 549 (561)
|.+ ||.+..
T Consensus 752 P~~~~Al~m~~ 762 (1165)
T TIGR02176 752 PAKEKALVMQP 762 (1165)
T ss_pred CCCCccccccc
Confidence 995 888753
No 401
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=97.66 E-value=1.2e-05 Score=76.50 Aligned_cols=45 Identities=24% Similarity=0.562 Sum_probs=40.3
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCC
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDP 541 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp 541 (561)
|.+.|.. ++.|+.+||.+++++.. .++.+|+++|+.||-|..+||
T Consensus 170 ~~E~c~g------c~~cv~~C~~gAI~~~~-----~~l~id~~~Ci~Cg~Ci~~Cp 214 (317)
T COG2221 170 DEELCRG------CGKCVKVCPTGAITWDG-----KKLKIDGSKCIGCGKCIRACP 214 (317)
T ss_pred CHHHhch------hHhHHHhCCCCceeecc-----ceEEEehhhccCccHHhhhCC
Confidence 7788886 45799999999999864 479999999999999999999
No 402
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.65 E-value=3.5e-05 Score=76.37 Aligned_cols=65 Identities=14% Similarity=0.261 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEc-CCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 132 DLVRWMGKKAENMGIDIFSGFSASEILYD-SKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 132 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~-~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
....+|..+..+.|++|+.++.|++|..+ +++++.+|+..+.+ +.. .-..+.++.||+|.|+-.+
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~----~~~-----~~~~~~ak~VIlaAGai~T 259 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDND----GGV-----QRRIVAAKEVILAAGAIGT 259 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETT----TSE-----EEEEEEEEEEEE-SHHHHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecC----Ccc-----eeeeccceeEEeccCCCCC
Confidence 44555665555559999999999999764 46678899886522 210 0136789999999996544
No 403
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.65 E-value=0.00039 Score=74.36 Aligned_cols=98 Identities=30% Similarity=0.391 Sum_probs=70.1
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
.+|+|||||+.|+-+|..|++. +.+|+|+|+.+.+..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~------g~~Vtli~~~~~l~~------------------------------------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGI------VRHVTVLEFADELKA------------------------------------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhc------CcEEEEEEeCCcCCh-------------------------------------
Confidence 5899999999999999999999 999999986543210
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.+.+.+.+++ .||++++++.++++..+ ++.+.+|.+.+. .+|+
T Consensus 390 -------------------------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~---~~~~- 433 (515)
T TIGR03140 390 -------------------------------DKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDR---NSGE- 433 (515)
T ss_pred -------------------------------hHHHHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEEC---CCCc-
Confidence 0113344444 59999999999998643 455656665431 1111
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+.++.+|.||.|.|....
T Consensus 434 ------~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 434 ------EKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred ------EEEEEcCEEEEEeCCcCC
Confidence 247899999999996543
No 404
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.65 E-value=0.00055 Score=72.03 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=68.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~ll~~----------------------------------- 207 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSAL------GTRVTIVNRSTKLLRH----------------------------------- 207 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccccc-----------------------------------
Confidence 46899999999999999999999 9999999987643110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
++ .++.+.+.+ ..+.|++++.+++|+++..++++ +.|.+.
T Consensus 208 ---------~d------------------~~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~--v~v~~~---------- 247 (452)
T TIGR03452 208 ---------LD------------------EDISDRFTE-IAKKKWDIRLGRNVTAVEQDGDG--VTLTLD---------- 247 (452)
T ss_pred ---------cC------------------HHHHHHHHH-HHhcCCEEEeCCEEEEEEEcCCe--EEEEEc----------
Confidence 00 012222333 22458999999999999764322 234432
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+|.++.+|.||.|.|....
T Consensus 248 -----~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 248 -----DGSTVTADVLLVATGRVPN 266 (452)
T ss_pred -----CCCEEEcCEEEEeeccCcC
Confidence 2457999999999996543
No 405
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.64 E-value=4.7e-05 Score=80.51 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=35.5
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCc
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAH 66 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~ 66 (561)
+||+|||+||+|+++|..|++. |++|+|||+....++.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~------g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA------GLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC------CCeEEEEeccCccCCC
Confidence 6999999999999999999999 9999999999888743
No 406
>PRK14727 putative mercuric reductase; Provisional
Probab=97.64 E-value=0.00054 Score=72.71 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=71.2
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-.|+|||||+.|+-+|..|++. |.+|+|+++......
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~l~~------------------------------------ 225 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARL------GSRVTILARSTLLFR------------------------------------ 225 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCCCc------------------------------------
Confidence 35799999999999999999999 999999986421100
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.+ .++.+.+.+.+++.||+++++++|+++..++++ +.|.+.
T Consensus 226 ---------~d------------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~---------- 266 (479)
T PRK14727 226 ---------ED------------------PLLGETLTACFEKEGIEVLNNTQASLVEHDDNG--FVLTTG---------- 266 (479)
T ss_pred ---------ch------------------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCE--EEEEEc----------
Confidence 00 134455667777889999999999998754322 233332
Q ss_pred ecccccCeEEecCEEEEccCCCchh
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
+.++.+|.||.|.|.....
T Consensus 267 ------~g~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 267 ------HGELRAEKLLISTGRHANT 285 (479)
T ss_pred ------CCeEEeCEEEEccCCCCCc
Confidence 1368999999999976553
No 407
>KOG4254|consensus
Probab=97.64 E-value=0.00025 Score=70.56 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 130 LSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 130 r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
-+.+...+++.+++.|.+|++...|.+|..+ +|.++||++.| |.+++++.||--.+.+-+.
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLAD---------------GTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecC---------------CcEEEeeeeecCCchHHHH
Confidence 3577888999999999999999999999987 59999999954 7789999998877765553
No 408
>KOG0685|consensus
Probab=97.63 E-value=6.1e-05 Score=75.69 Aligned_cols=43 Identities=33% Similarity=0.530 Sum_probs=37.1
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
....|||||||+|||+||.+|.++. ..+|+|+|..+.+|+++.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~g-----f~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENG-----FIDVLILEASDRIGGRIH 62 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhC-----CceEEEEEeccccCceEe
Confidence 3468999999999999999999661 568999999999998753
No 409
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.62 E-value=3.5e-05 Score=84.83 Aligned_cols=55 Identities=29% Similarity=0.587 Sum_probs=43.2
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
.+..|..|. ..+|+.+||.+++.... ..+.+|.++|++|+.|...||.++|++..
T Consensus 52 ~~~~C~~C~----~~~C~~~CP~~ai~~~~-----~~~~id~~~C~~C~~C~~~CP~~ai~~~~ 106 (654)
T PRK12769 52 SAVTCHHCE----DAPCARSCPNGAISHVD-----DSIQVNQQKCIGCKSCVVACPFGTMQIVL 106 (654)
T ss_pred CCccCCCCC----ChhHhhhCCccceeccC-----CeEEEecccccCcChhcccCCccCeeecc
Confidence 356787754 45799999999987643 25788999999999999999999998753
No 410
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=97.60 E-value=2.8e-05 Score=75.16 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=43.7
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14497 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 487 ~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
.+.|.. |+.|+..||.+++.++++ .....+...|..|+.|...||.+||+++.-
T Consensus 168 ~~~C~~------C~~C~~~CP~~vi~~~~~----~~~v~~~~~C~~C~~Ci~~CP~~AI~i~~~ 221 (263)
T PRK00783 168 SEDCDE------CEKCVEACPRGVLELKEG----KLVVTDLLNCSLCKLCERACPGKAIRVSDD 221 (263)
T ss_pred cccCCc------hHHHHHhCCccccEecCC----eEEEeChhhCCCchHHHHhCCCCceEEEEc
Confidence 467866 467999999999998642 345568899999999999999999987653
No 411
>PRK10262 thioredoxin reductase; Provisional
Probab=97.60 E-value=0.00047 Score=69.18 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=73.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||+|..|+-+|..|++. +.+|+++++.+.....
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~------~~~Vtlv~~~~~~~~~----------------------------------- 184 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNI------ASEVHLIHRRDGFRAE----------------------------------- 184 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhh------CCEEEEEEECCccCCC-----------------------------------
Confidence 35899999999999999999999 9999999987543100
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
..+.+.+.+.+++.||++++++.++++..+ ++.+.+|.+.+.. .++
T Consensus 185 -----------------------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~--~~~-- 230 (321)
T PRK10262 185 -----------------------------KILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQ--NSD-- 230 (321)
T ss_pred -----------------------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcC--CCC--
Confidence 012234555566789999999999999653 3345556653210 001
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+..++.+|.||.+.|....
T Consensus 231 -----~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 231 -----NIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred -----eEEEEECCEEEEEeCCccC
Confidence 1247999999999996544
No 412
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=97.58 E-value=3.2e-05 Score=74.55 Aligned_cols=55 Identities=22% Similarity=0.275 Sum_probs=44.7
Q ss_pred CCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECCCC
Q psy14497 488 KIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITPEG 552 (561)
Q Consensus 488 ~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g 552 (561)
+.|.. |+.|+..||.++++++++ .....|.+.|+.|+.|...||.++|+++..++
T Consensus 169 ~~C~~------C~~C~~~CP~~vi~~d~~----~~~v~~~~~C~~C~~C~~~Cp~~AI~~~~~~~ 223 (259)
T cd07030 169 EDCDG------CGKCVEECPRGVLELEEG----KVVVEDLEDCSLCKLCERACDAGAIRVGWDED 223 (259)
T ss_pred hhCCC------hHHHHHhCCccceEccCC----eeEEeChhhCcCchHHHHhCCCCcEEEEecCC
Confidence 66765 467999999999987542 35667899999999999999999998775443
No 413
>PLN02546 glutathione reductase
Probab=97.58 E-value=0.00083 Score=72.05 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=72.6
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+...
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~------g~~Vtlv~~~~~il~~----------------------------------- 290 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGL------KSDVHVFIRQKKVLRG----------------------------------- 290 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhc------CCeEEEEEeccccccc-----------------------------------
Confidence 35899999999999999999999 9999999987653110
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
++ ..+...+.+.+++.||+++.++.+.++..++++. +.+.+.
T Consensus 291 ---------~d------------------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~-v~v~~~---------- 332 (558)
T PLN02546 291 ---------FD------------------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGS-LSLKTN---------- 332 (558)
T ss_pred ---------cC------------------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCE-EEEEEC----------
Confidence 00 0233456666777899999999999997643442 234432
Q ss_pred ecccccCeEEecCEEEEccCCCchh
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
++....+|.||.|.|.....
T Consensus 333 -----~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 333 -----KGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred -----CeEEEecCEEEEeeccccCC
Confidence 12344589999999976653
No 414
>PRK13795 hypothetical protein; Provisional
Probab=97.56 E-value=3.6e-05 Score=83.59 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=46.0
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeE
Q psy14497 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
.+++.+.|.. |+.|+..||.+++.+.+. ...+.+|.+.|++||.|..+||..+|.-
T Consensus 576 ~v~~~~~C~~------Cg~C~~~CP~~ai~~~~~---~~~~~id~~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 576 LLRRAAECVG------CGVCVGACPTGAIRIEEG---KRKISVDEEKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred EEEccccCCC------HhHHHHhCCcccEEeecC---CceEEechhhcCChhHHHhhcCCCeeEe
Confidence 4567889987 467999999999887542 2357889999999999999999998853
No 415
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=97.54 E-value=2.3e-05 Score=73.54 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=43.5
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
++|.+.|.. ++.|+..||.+++++..+ ...+|.+.|+.|+.|...||++.|.
T Consensus 170 ~id~~~C~~------C~~C~~aCP~~ai~~~~~-----~~~i~~~~C~~C~~C~~~CP~~~~~ 221 (228)
T TIGR03294 170 VVNQGLCMG------CGTCAAACPTRAIEMEDG-----RPNVNRDRCIKCGACYVQCPRAFWP 221 (228)
T ss_pred EEChhhCcC------hhHHHHhCCHhhEEEeCC-----cEEEChhhccCHHHHHHHcCCCCcc
Confidence 457889987 467999999999887542 3678999999999999999998864
No 416
>PRK13748 putative mercuric reductase; Provisional
Probab=97.54 E-value=0.00085 Score=72.88 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=70.7
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
.-+|+|||||+.|+-+|..|++. |.+|+|+++......
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~------------------------------------ 307 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARL------GSKVTILARSTLFFR------------------------------------ 307 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCEEEEEecCccccc------------------------------------
Confidence 35899999999999999999999 999999997431100
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
.+ .++.+.+.+.+++.||+++.++.|+++..+ ++. +.+.+.
T Consensus 308 ---------~d------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~---------- 348 (561)
T PRK13748 308 ---------ED------------------PAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTG---------- 348 (561)
T ss_pred ---------cC------------------HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEec----------
Confidence 00 023345666677789999999999998754 332 234332
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
+ .++.+|.||.|.|....
T Consensus 349 -----~-~~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 349 -----H-GELRADKLLVATGRAPN 366 (561)
T ss_pred -----C-CeEEeCEEEEccCCCcC
Confidence 1 26999999999997655
No 417
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.54 E-value=0.00059 Score=73.08 Aligned_cols=98 Identities=26% Similarity=0.328 Sum_probs=70.6
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
.+|+|||||..|+-+|..|+.. +.+|+|+++.+.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~------~~~Vtlv~~~~~l~~------------------------------------- 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI------VKHVTVLEFAPELKA------------------------------------- 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCEEEEEEECccccc-------------------------------------
Confidence 5899999999999999999999 999999987654310
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
...|.+.+.+ .||++++++.++++..+ ++.+.+|.+.+. .+|+
T Consensus 389 -------------------------------~~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~---~~g~- 432 (517)
T PRK15317 389 -------------------------------DQVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDR---TTGE- 432 (517)
T ss_pred -------------------------------cHHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEEEC---CCCc-
Confidence 0112333333 59999999999999753 456666665431 1221
Q ss_pred ecccccCeEEecCEEEEccCCCch
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
..++.+|.|+.|.|....
T Consensus 433 ------~~~i~~D~v~~~~G~~p~ 450 (517)
T PRK15317 433 ------EHHLELEGVFVQIGLVPN 450 (517)
T ss_pred ------EEEEEcCEEEEeECCccC
Confidence 146999999999996543
No 418
>PRK09898 hypothetical protein; Provisional
Probab=97.53 E-value=3.7e-05 Score=71.46 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=43.5
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEEC
Q psy14497 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
.++|.+.|+. ++.|+.+||.+++.++.. ..+.++|..||.|..+||.+||.+..
T Consensus 149 v~vd~~~Cig------C~~C~~aCP~~ai~~~~~-------~~~~~kC~~Cg~Cv~~CP~~Ai~~~~ 202 (208)
T PRK09898 149 ITVDHKRCIG------CSACTTACPWMMATVNTE-------SKKSSKCVLCGECANACPTGALKIIE 202 (208)
T ss_pred EEeccccCCC------cCcccccCCCCCCEecCC-------CCcCCcCcChHHHHHhCCcccEEEec
Confidence 3467888987 467999999999877532 12578999999999999999999853
No 419
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.52 E-value=0.00091 Score=70.89 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=69.9
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLF 102 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 102 (561)
-.|+|||||+.|+-+|..|++. |.+|+|+++. .+-. .
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~-~~l~------------------~------------------ 217 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGI------GLDVTVMVRS-ILLR------------------G------------------ 217 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHh------CCcEEEEEec-cccc------------------c------------------
Confidence 4799999999999999999999 9999999863 2100 0
Q ss_pred hcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCcee
Q psy14497 103 LSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIK 182 (561)
Q Consensus 103 ~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~ 182 (561)
++ .++.+.+.+.+++.||++++++.+.++... ++. +.|...+ +.
T Consensus 218 --------~d------------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~------~~-- 261 (484)
T TIGR01438 218 --------FD------------------QDCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAK-VKVTFTD------ST-- 261 (484)
T ss_pred --------cC------------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCe-EEEEEec------CC--
Confidence 00 033445666677789999999999888754 222 2344322 10
Q ss_pred cccccCeEEecCEEEEccCCCch
Q psy14497 183 KNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 183 ~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
.+.++.+|.||.|.|....
T Consensus 262 ----~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 262 ----NGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred ----cceEEEeCEEEEEecCCcC
Confidence 0237899999999996543
No 420
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.52 E-value=0.0055 Score=64.98 Aligned_cols=39 Identities=15% Similarity=-0.020 Sum_probs=31.2
Q ss_pred ecCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcC
Q psy14497 330 IFDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSN 373 (561)
Q Consensus 330 ~~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~ 373 (561)
+.++|+++||++.. ...+..|+.+|..+|..|.++|.+.
T Consensus 443 s~~gVfAaGD~~~g-----~~~~~~Av~~G~~AA~~i~~~L~g~ 481 (485)
T TIGR01317 443 SIPGVFAAGDCRRG-----QSLIVWAINEGRKAAAAVDRYLMGS 481 (485)
T ss_pred CCCCEEEeeccCCC-----cHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34799999999742 2246789999999999999998753
No 421
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.51 E-value=0.0032 Score=64.59 Aligned_cols=43 Identities=30% Similarity=0.315 Sum_probs=36.3
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
.++=|||+|+|+||+|..|-|- .+-||-+|+|+|+.+.+|+.+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrD--a~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRD--AKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhcc--CCCCccceEEEeCCCCCCCcc
Confidence 4677999999999999999876 345788999999999887653
No 422
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=97.50 E-value=5.3e-05 Score=71.10 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=44.0
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCC----------cccccCCCCCeeEECCC
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCK----------TCDIKDPTQNIEWITPE 551 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg----------~C~~~cp~~~i~~~~p~ 551 (561)
.+|.+.|+. ++.|+.+||.+++.+.+. ..+.++|+.|+ .|+..||++||+|...+
T Consensus 121 ~id~~~C~~------C~~C~~aCP~~A~~~~~~-------~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~ 185 (225)
T TIGR03149 121 DVHKDLCVG------CQYCIAACPYRVRFIHPV-------TKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLN 185 (225)
T ss_pred EechhhCCc------chHHHHhCCCCCcEecCC-------CCccccCCCCCcchhhCCCCCcccccCccCCEEEeccc
Confidence 357889987 467999999999776532 12568999999 89999999999986544
No 423
>PRK10194 ferredoxin-type protein; Provisional
Probab=97.50 E-value=2.7e-05 Score=69.41 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=34.1
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCC-----ccCCcccccCCCCCeeEEC
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNC-----IHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C-----~~Cg~C~~~cp~~~i~~~~ 549 (561)
++.+.|.. ++.|+.+||.++++...... .....++.++| +.|+.|..+||.+||++..
T Consensus 63 ~~~~~C~~------C~~C~~~CP~~ai~~~~~~~-~~~~~~~~~~C~~~~~~~C~~C~~~CP~~Ai~~~~ 125 (163)
T PRK10194 63 FKNNECSF------CYACAQACPESLFSPRHTRA-WDLQFTIGDACLAYQSVECRRCQDSCEPMAIIFRP 125 (163)
T ss_pred ecCCCCCC------chhhHhhCcchheecccccc-cceeeeecccCCCccCCCcCcchhhCCHhHeEeee
Confidence 34455554 35677777777765432211 11233345666 5788888888887777753
No 424
>PRK02106 choline dehydrogenase; Validated
Probab=97.47 E-value=0.00012 Score=79.29 Aligned_cols=37 Identities=38% Similarity=0.712 Sum_probs=33.8
Q ss_pred CCcccEEEECchhHHHHHHHHHHh-ccccCCCCCcEEEEcCCCC
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQ-LAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~-~~~~~~~G~~V~ViEk~~~ 62 (561)
+.+|||||||||+||+.+|..|++ . |++|+|||+++.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~------g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDP------DVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCC------CCeEEEecCCCc
Confidence 456999999999999999999999 6 999999999953
No 425
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=97.47 E-value=6.2e-05 Score=71.33 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=40.1
Q ss_pred EcCCCCcccccccccccccccccCC--eeEEEEeecCc-eeEEE-------EccCCCccCCcccccCCCCCeeEE
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPA--GVYEFIIEKNK-IQHLQ-------INAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~--~~~~~~~~~~~-~~~~~-------~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.+|.+.|+. ++.|+++||. +...+.....+ ...+. .+...|++||.|..+||++||.+.
T Consensus 142 ~~d~~kCi~------Cg~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~ 210 (234)
T PRK07569 142 GIDHNRCVL------CTRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRK 210 (234)
T ss_pred EeehhhCcC------ccHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEec
Confidence 358899998 4679999994 33333222111 11222 235689999999999999999763
No 426
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.46 E-value=0.00099 Score=65.95 Aligned_cols=98 Identities=23% Similarity=0.351 Sum_probs=69.1
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
..+|+|||+|+.|+-+|..|++. +.+|+++++.+....
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~------~~~V~~v~~~~~~~~------------------------------------ 178 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRI------AKKVTLVHRRDKFRA------------------------------------ 178 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhh------cCEEEEEEeCcccCc------------------------------------
Confidence 35899999999999999999999 999999998643200
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHC-CCEEEcCceEeEEEEcCCCCEEEEEecccccccCCc
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENM-GIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGI 180 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~ 180 (561)
...+.+.+.+. |++++++++++++..+ +++..+.+.+. .+|
T Consensus 179 --------------------------------~~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~---~~g- 220 (300)
T TIGR01292 179 --------------------------------EKILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNT---VTG- 220 (300)
T ss_pred --------------------------------CHHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEec---CCC-
Confidence 01133344455 9999999999998743 34555554221 111
Q ss_pred eecccccCeEEecCEEEEccCCCch
Q psy14497 181 IKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 181 ~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
++.++.+|.||.|.|....
T Consensus 221 ------~~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 221 ------EEEELKVDGVFIAIGHEPN 239 (300)
T ss_pred ------ceEEEEccEEEEeeCCCCC
Confidence 1357999999999995544
No 427
>PLN03000 amine oxidase
Probab=97.46 E-value=0.00013 Score=80.37 Aligned_cols=41 Identities=39% Similarity=0.579 Sum_probs=38.2
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
...+|+|||||++||++|..|++. |++|+|+|++..+|+++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~------G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF------GFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC------CCcEEEEEccCcCCCCc
Confidence 468999999999999999999999 99999999999988764
No 428
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.45 E-value=0.00046 Score=74.60 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCchh
Q psy14497 131 SDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGHL 206 (561)
Q Consensus 131 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~~ 206 (561)
..+.+.|.+.+.+.||+++.++.++++..+++|+++||..-+ ..+|+. ..+.|+.||+|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAIC---IETGET-------VYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEE---cCCCcE-------EEEecCeEEECCCCcccc
Confidence 578899999998899999999999999876678999987632 123321 368999999999988764
No 429
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.45 E-value=8.3e-05 Score=69.00 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=44.5
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeec----CceeEEEEccCCCc-----cCCcccccCCC--CCeeEECC
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEK----NKIQHLQINAQNCI-----HCKTCDIKDPT--QNIEWITP 550 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~----~~~~~~~~~~~~C~-----~Cg~C~~~cp~--~~i~~~~p 550 (561)
+...|..|. +.+|+.+||.++++..... ..+..+++|.++|+ +|+.|..+||. +||++...
T Consensus 89 ~~~~C~~C~----d~~Cv~~CP~~Ai~~~~~~~~~~~~g~av~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~ 160 (213)
T TIGR00397 89 REVPCRMCK----DIPCARACPTGALDPLLTDIRKADMGVAVLVGHETCLNYKGLNCSICVRVCPIRGEAISLKPI 160 (213)
T ss_pred cCCcCCCCC----CchHHhHcCHhhhchhhhccccccCceEEEECCCCcccCCCCCcccchhhCCCCcceEEEecc
Confidence 345687642 2389999999998753111 11234678999999 99999999999 79998654
No 430
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.44 E-value=5.3e-05 Score=83.06 Aligned_cols=54 Identities=31% Similarity=0.583 Sum_probs=44.0
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
+...|..|. .-+|+.+||.+++.+.+ ..+.+|.+.|++|+.|..+||+++|++.
T Consensus 52 ~~~~C~~C~----~~~C~~~CP~~ai~~~~-----~~v~~d~~~C~gC~~C~~~CP~~ai~~~ 105 (639)
T PRK12809 52 NPVACHHCN----NAPCVTACPVNALTFQS-----DSVQLDEQKCIGCKRCAIACPFGVVEMV 105 (639)
T ss_pred cCCCCcCcC----ChhHHhhCCcCceeccc-----cceecChhhCcchhhHhhhcCCCCEEcc
Confidence 567787754 34799999999988643 2578899999999999999999999874
No 431
>PRK13984 putative oxidoreductase; Provisional
Probab=97.43 E-value=6.2e-05 Score=82.32 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=46.4
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecC-----c--eeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN-----K--IQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~-----~--~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.|.+.|+. |+.|+.+||.+++.+.+..+ + .....+|...|..|+.|...||.+||+|+
T Consensus 42 ~d~~~Ci~------C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~ 106 (604)
T PRK13984 42 NDWEKCIG------CGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMT 106 (604)
T ss_pred cChhhCcC------ccchhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEec
Confidence 48899998 46799999999987654210 1 12468899999999999999999999884
No 432
>KOG1800|consensus
Probab=97.42 E-value=0.00021 Score=69.63 Aligned_cols=46 Identities=26% Similarity=0.293 Sum_probs=39.8
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeec
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSG 70 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G 70 (561)
....|.|||+||||+-+|..|.++ .++++|.|+||.+.+.+-...|
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~----~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKR----HPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhc----CCCCeeEeeecCCcccceeeec
Confidence 445999999999999999999886 4589999999999998766666
No 433
>PLN02976 amine oxidase
Probab=97.35 E-value=0.00024 Score=81.22 Aligned_cols=41 Identities=37% Similarity=0.652 Sum_probs=37.8
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
...+|+|||||++|+++|+.|++. |++|+|||+++.+|+.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~------G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ------GFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC------CCcEEEEeeccCCCCce
Confidence 458999999999999999999999 99999999998888764
No 434
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.32 E-value=0.0013 Score=66.75 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=29.8
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCc-EEEEcCCC
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIK-ICVLEKGS 61 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~-V~ViEk~~ 61 (561)
-.|+|||+|+.|+-+|..|++. |.+ |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~------g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL------GAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeecc
Confidence 5799999999999999999998 987 99998754
No 435
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.29 E-value=0.00017 Score=68.70 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=43.0
Q ss_pred CCcccccccccccccccccCCeeEEEEeecC----ceeEEEEccCCCc-----cCCcccccCCC--CCeeEEC
Q psy14497 488 KIPIHINFSIYAGPEARYCPAGVYEFIIEKN----KIQHLQINAQNCI-----HCKTCDIKDPT--QNIEWIT 549 (561)
Q Consensus 488 ~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~----~~~~~~~~~~~C~-----~Cg~C~~~cp~--~~i~~~~ 549 (561)
..|..|. +-+|+.+||.+++++..... -...+.+|.++|+ +|+.|..+||. +||++..
T Consensus 97 ~~C~~C~----~~~Cv~aCPtgAL~~~~~~~~~~~~g~av~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~ 165 (254)
T PRK09476 97 IPCEMCE----DIPCVKACPSGALDRELVDIDDARMGLAVLVDQENCLNFQGLRCDVCYRVCPLIDKAITLEL 165 (254)
T ss_pred CcCcCCC----CCchhhccCccceEeecccccccccCceeecchhhccccCCCchHHHhhhCCCccCeEEEEc
Confidence 4576632 23799999999998743211 1134559999999 89999999996 8999875
No 436
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=97.28 E-value=3.6e-05 Score=66.54 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=53.4
Q ss_pred ccCCCCCCceEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14497 473 NHDEDQPIHLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 473 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
.|.+.+.+-+-.+|.+.|+.| ..|+.+||.+++.--++ .-..+..+-|.+|+.|...||+++|++..-
T Consensus 100 ~~~~~~~~~va~i~e~~ciGC------tkCiqaCpvdAivg~~~----~mhtv~~dlCTGC~lCva~CPtdci~m~~~ 167 (198)
T COG2878 100 EHGEEQARMVALIDEANCIGC------TKCIQACPVDAIVGATK----AMHTVIADLCTGCDLCVAPCPTDCIEMQPV 167 (198)
T ss_pred hhhccccceeeEecchhcccc------HHHHHhCChhhhhccch----hHHHHHHHHhcCCCcccCCCCCCceeeeec
Confidence 455566777878899999995 45999999999664321 234567899999999999999999998543
No 437
>PRK07118 ferredoxin; Validated
Probab=97.26 E-value=9.9e-05 Score=71.45 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=40.0
Q ss_pred ccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 499 AGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
++.|+.+||.+++.+.+ ....+|+++|+.|+.|...||.++|++.
T Consensus 144 Cg~C~~aCp~~AI~~~~-----g~~~id~~~C~~Cg~Cv~aCP~~ai~~~ 188 (280)
T PRK07118 144 LGSCVAACPFDAIHIEN-----GLPVVDEDKCTGCGACVKACPRNVIELI 188 (280)
T ss_pred hhHHHHhCCccCeEccC-----CeEEEChhhCcChhHHHHhcCccceeee
Confidence 57799999999988754 2688999999999999999999999986
No 438
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=97.25 E-value=9.5e-05 Score=74.31 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=42.2
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCce-------eEEEEccCCCccCCcccccCCCCCe
Q psy14497 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKI-------QHLQINAQNCIHCKTCDIKDPTQNI 545 (561)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~-------~~~~~~~~~C~~Cg~C~~~cp~~~i 545 (561)
.+++.+.|+. |+.|+.+||.+++.+.++.... ....+|...|+.||.|..+||..++
T Consensus 7 ~vi~~~~C~g------Cg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 7 EVIEYDVCTA------CGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred cEECcccCcC------hHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcc
Confidence 4678899987 4679999999999886532100 0113578899999999999998554
No 439
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=97.25 E-value=6.7e-05 Score=72.09 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=43.9
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccC---------CcccccCCCCCeeE
Q psy14497 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHC---------KTCDIKDPTQNIEW 547 (561)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C---------g~C~~~cp~~~i~~ 547 (561)
+.++|.+.|+. ++.|+.+||.+++.+... ..+.++|..| ..|+..||.+|+.+
T Consensus 156 iV~ID~ekCiG------Cg~Cv~ACPygAi~~n~~-------~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~f 217 (321)
T TIGR03478 156 IVLVDQERCKG------YRYCVEACPYKKVYFNPQ-------SQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFV 217 (321)
T ss_pred eEEECHHHCcc------hHHHHHhCCCCCcEecCC-------CCchhhCCCchhhhccCCCCHHHhhcCcccEEE
Confidence 44578899988 457999999999887642 2467899999 89999999999987
No 440
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.001 Score=63.72 Aligned_cols=117 Identities=17% Similarity=0.264 Sum_probs=66.5
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccc--cccCCcccc--ccc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPK--EKLNKLFNT--PVI 96 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~--~~~~~~~~~--~~~ 96 (561)
+..-|-|||||.||.-+|++++++ |++|.++|-++.-+...+.. ..+.++... +. +..... .+-
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~------Gv~V~L~EMRp~k~TpaH~t-----d~fAELVCSNSlr-~~~~~navGlL 69 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKR------GVPVILYEMRPVKGTPAHKT-----DNFAELVCSNSLR-SDALTNAVGLL 69 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHc------CCcEEEEEcccccCCCcccc-----cchhhheeccccc-cchhhhhhHHH
Confidence 456789999999999999999999 99999999887654332211 111111100 00 000000 001
Q ss_pred hhhhhhhcCCCCccc---CCCCCCceeecCCcEEeeHHHHHHHHHHHHHH-CCCEEEcCceEeEE
Q psy14497 97 EERFLFLSSKKSYKI---PSWILPICFKNHGNYIISLSDLVRWMGKKAEN-MGIDIFSGFSASEI 157 (561)
Q Consensus 97 ~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~i 157 (561)
...++.+.+ +.+ +...+|. .+...++|..|-+.+.+.++. ..|+|+.+ +|+++
T Consensus 70 k~EMR~lgS---lii~~Ad~~~VPA----GgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~i 126 (439)
T COG1206 70 KAEMRLLGS---LIIEAADKHRVPA----GGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEI 126 (439)
T ss_pred HHHHHHhhh---HHhhhhhhccCCC----CceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccC
Confidence 111222211 111 1112332 447889999999999999877 45666543 44444
No 441
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=97.19 E-value=0.00021 Score=36.96 Aligned_cols=17 Identities=41% Similarity=0.794 Sum_probs=14.0
Q ss_pred cCCCccCCcccccCCCC
Q psy14497 527 AQNCIHCKTCDIKDPTQ 543 (561)
Q Consensus 527 ~~~C~~Cg~C~~~cp~~ 543 (561)
.++|++|+.|..+||.+
T Consensus 1 ~~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 1 QERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp -CCCTTSSSSTTTSTT-
T ss_pred CCcCCCCchHHhhccCC
Confidence 36899999999999964
No 442
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=97.18 E-value=0.00019 Score=75.35 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=40.7
Q ss_pred ceEEcCCCCcccccccccccccccccC----CeeEEEEeecCce-----eEEEEccCCCccCCcccccCCCCCe
Q psy14497 481 HLILKNKKIPIHINFSIYAGPEARYCP----AGVYEFIIEKNKI-----QHLQINAQNCIHCKTCDIKDPTQNI 545 (561)
Q Consensus 481 h~~~~~~~~~~~~~~~~~~~~c~~~CP----~~~~~~~~~~~~~-----~~~~~~~~~C~~Cg~C~~~cp~~~i 545 (561)
-..+.|++.|+. |+.|+++|- ..++.++-..... ...-++.+-|+.||.|+.+||++|+
T Consensus 142 Pfy~ydp~qCIl------CgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nAL 209 (978)
T COG3383 142 PFYIYDPNQCIL------CGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNAL 209 (978)
T ss_pred CeEEecchheee------hhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhh
Confidence 335679999999 467999996 2344443221100 1233567789999999999999997
No 443
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=97.15 E-value=5.4e-05 Score=56.39 Aligned_cols=44 Identities=25% Similarity=0.498 Sum_probs=34.7
Q ss_pred ccccccccCCeeEEEEee------------cCceeEEEEccCCCc------cCCcccccCCC
Q psy14497 499 AGPEARYCPAGVYEFIIE------------KNKIQHLQINAQNCI------HCKTCDIKDPT 542 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~------------~~~~~~~~~~~~~C~------~Cg~C~~~cp~ 542 (561)
++.|+++||++||+...+ ..+...+..|..+|. .||.|..+||.
T Consensus 5 C~~C~~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~C~~C~~vCP~ 66 (67)
T PF13484_consen 5 CGKCAEACPTGAISGEDEPTWEPKGCWSYNNPGVKKWRIDWEKCVSYWDCYGCGICQKVCPF 66 (67)
T ss_pred hhHHHHhCcHhhccCCCcCeeecCcchhccCccccCccchHHhhhcCCCccccchhhccCCC
Confidence 567999999999987621 023356778888888 99999999996
No 444
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=97.14 E-value=0.00011 Score=58.60 Aligned_cols=54 Identities=22% Similarity=0.427 Sum_probs=35.2
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccC---------CcccccCCCCCeeEE
Q psy14497 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHC---------KTCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C---------g~C~~~cp~~~i~~~ 548 (561)
+.++|.++|+. ++.|+..||.+++.+.++.. ...+|--| ..|+.+||++||++.
T Consensus 34 ~V~id~~~Cig------C~~C~~aCP~~ai~~~~~~~-------~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g 96 (98)
T PF13247_consen 34 IVVIDEDKCIG------CGYCVEACPYGAIRFDPDTG-------KARKCDLCIDRIEEGEEPACVEACPTGALTFG 96 (98)
T ss_dssp -EEE-TTTCCT------HHHHHHH-TTS-EEEETTTT-------CEEE--TTHHHHTTT-S-HHHHH-TTS-EEEE
T ss_pred eEEechhhccC------chhhhhhhccCcceeecccc-------cCCcCceehhhhhcCCCChhHHhccccceEEe
Confidence 44679999998 46799999999999876421 22457777 789999999999873
No 445
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.14 E-value=0.0036 Score=66.06 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=73.3
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCC-cEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~-~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
...|+|||+|..|+-+|..+.++ |. +|+|+++++...-
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~------Ga~~Vtvv~r~~~~~~----------------------------------- 320 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRL------GAASVTCAYRRDEANM----------------------------------- 320 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCeEEEEEecCcccC-----------------------------------
Confidence 46899999999999999999999 85 7999998654210
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccc---cccc
Q psy14497 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNF---GINK 177 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~---~~~~ 177 (561)
+ . .. ...+.+.+.||++++++.++++..++++++.+|++... ..+.
T Consensus 321 -----------~-----~----------~~-----~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~ 369 (467)
T TIGR01318 321 -----------P-----G----------SR-----REVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDA 369 (467)
T ss_pred -----------C-----C----------CH-----HHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCC
Confidence 0 0 00 12234567899999999999997655666766655321 1122
Q ss_pred CCceecc--cccCeEEecCEEEEccCCC
Q psy14497 178 EGIIKKN--FQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 178 ~g~~~~~--f~~g~~i~ad~vV~AdG~~ 203 (561)
+|..... -.+..++.+|.||.|.|..
T Consensus 370 ~g~~~~~~~~g~~~~i~~D~Vi~a~G~~ 397 (467)
T TIGR01318 370 DGRRRPVPVAGSEFVLPADVVIMAFGFQ 397 (467)
T ss_pred CCCccceecCCceEEEECCEEEECCcCC
Confidence 3321111 1223478999999999954
No 446
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.11 E-value=0.0033 Score=66.33 Aligned_cols=110 Identities=21% Similarity=0.240 Sum_probs=71.0
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCC-cEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhh
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERF 100 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~-~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 100 (561)
.-+|+|||||..|+-+|..|++. |. +|+|++++....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~------G~~~Vtlv~~~~~~~------------------------------------ 310 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRL------GAESVTIVYRRGREE------------------------------------ 310 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCCeEEEeeecCccc------------------------------------
Confidence 46899999999999999999999 98 899999764310
Q ss_pred hhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEeccc---cccc
Q psy14497 101 LFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNF---GINK 177 (561)
Q Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~---~~~~ 177 (561)
++ . . ..+.+.+++.||++++++.+.++..+ ++.+.+|.+... ..+.
T Consensus 311 ----------~~-----~----------~-----~~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~ 359 (457)
T PRK11749 311 ----------MP-----A----------S-----EEEVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDA 359 (457)
T ss_pred ----------CC-----C----------C-----HHHHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCC
Confidence 00 0 0 01234556789999999999998754 333344443211 0122
Q ss_pred CCceecc-cccCeEEecCEEEEccCCCc
Q psy14497 178 EGIIKKN-FQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 178 ~g~~~~~-f~~g~~i~ad~vV~AdG~~S 204 (561)
+|+.... -.++.++.+|.||.|.|...
T Consensus 360 ~g~~~~~~~g~~~~i~~D~vi~a~G~~p 387 (457)
T PRK11749 360 SGRRRVPIEGSEFTLPADLVIKAIGQTP 387 (457)
T ss_pred CCCcccCCCCceEEEECCEEEECccCCC
Confidence 2321100 01235799999999999543
No 447
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.10 E-value=0.00018 Score=79.54 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=39.1
Q ss_pred EEcCCCCcccccccccccccccccCC----eeEEEEeecCcee-E---------------------EEE-----ccCCCc
Q psy14497 483 ILKNKKIPIHINFSIYAGPEARYCPA----GVYEFIIEKNKIQ-H---------------------LQI-----NAQNCI 531 (561)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~c~~~CP~----~~~~~~~~~~~~~-~---------------------~~~-----~~~~C~ 531 (561)
...|++.|+. |+.|+++||. +++.+..- |.. . ..+ +...|+
T Consensus 136 I~~D~~rCI~------C~RCVr~C~ev~g~~al~~~~R--G~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~ 207 (819)
T PRK08493 136 INYDPSLCIV------CERCVTVCKDKIGESALKTVPR--GLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCS 207 (819)
T ss_pred EEechhhccc------ccHHHhhCcccccchhhhhccC--CcccccccccccccccchhhhhhcccceecccCCCccccc
Confidence 3469999999 4679999995 33332211 100 0 011 357999
Q ss_pred cCCcccccCCCCCeeEE
Q psy14497 532 HCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 532 ~Cg~C~~~cp~~~i~~~ 548 (561)
.||.|..+||++||.-.
T Consensus 208 ~CG~Cv~VCPvGAL~~k 224 (819)
T PRK08493 208 FCGECIAVCPVGALSSS 224 (819)
T ss_pred ccCcHHHhCCCCccccC
Confidence 99999999999999643
No 448
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=97.09 E-value=0.00014 Score=68.92 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=43.5
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCC---------cccccCCCCCeeEE
Q psy14497 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCK---------TCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~cp~~~i~~~ 548 (561)
+.++|.+.|+.| +.|+..||.+++.+.+. ..+.++|..|+ .|..+||++||.+.
T Consensus 124 ~v~id~~~CigC------~~Cv~aCP~~Ai~~~~~-------~~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g 186 (244)
T PRK14993 124 IVVVDNKRCVGC------AYCVQACPYDARFINHE-------TQTADKCTFCVHRLEAGLLPACVESCVGGARIIG 186 (244)
T ss_pred CEEEcHHHCCCH------HHHHHhcCCCCCEEeCC-------CCCcccCcCCcchhhCCCCcccchhcccCCEEEc
Confidence 345688999884 56999999999988652 12568999998 89999999999753
No 449
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.09 E-value=0.0027 Score=64.24 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=83.2
Q ss_pred CCcEEEEcCCCCCCCcee-ecc-e---eChhhHHhhccccc-----cCCccccccchhhhhhhcCCCC-ccc--CCCCCC
Q psy14497 51 EIKICVLEKGSELGAHIL-SGA-I---IDPRSIFELFPKEK-----LNKLFNTPVIEERFLFLSSKKS-YKI--PSWILP 117 (561)
Q Consensus 51 G~~V~ViEk~~~~g~~~~-~G~-~---~~~~~l~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~p 117 (561)
|.+|+|+||.+.+|.++. +|. . .+.....++..... ....+......+-+.|+.+.+- ... ....+|
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~grvfP 80 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGRVFP 80 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCEECC
Confidence 568999999999998864 332 1 12111122211111 1122233344555666655322 111 112222
Q ss_pred ceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEE
Q psy14497 118 ICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTL 197 (561)
Q Consensus 118 ~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV 197 (561)
. .-.-.++...|...+++.||+|+++++|+++ . ++. ..|.+.. ++.+++||.||
T Consensus 81 ~--------S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~--~~~-~~v~~~~--------------~~~~~~a~~vI 134 (376)
T TIGR03862 81 V--------EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q--GGT-LRFETPD--------------GQSTIEADAVV 134 (376)
T ss_pred C--------CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e--CCc-EEEEECC--------------CceEEecCEEE
Confidence 1 2345788999999999999999999999999 2 222 4565521 12368999999
Q ss_pred EccCCCch-------hhHHHHHHcCCCC
Q psy14497 198 FAEGSRGH-------LSKQIIKKFNLDN 218 (561)
Q Consensus 198 ~AdG~~S~-------~~~~l~~~~g~~~ 218 (561)
+|+|..|. ..-.+++++|...
T Consensus 135 lAtGG~s~p~~Gs~g~gy~la~~lGh~i 162 (376)
T TIGR03862 135 LALGGASWSQLGSDGAWQQVLDQRGVSV 162 (376)
T ss_pred EcCCCccccccCCCcHHHHHHHHCCCcc
Confidence 99998763 1234555577665
No 450
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=97.03 E-value=0.00024 Score=72.06 Aligned_cols=43 Identities=21% Similarity=0.507 Sum_probs=36.8
Q ss_pred ccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14497 499 AGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
.+.|+..||.+|++++. + +++.+|.++|++|+-|..+||. |++
T Consensus 247 ~~~~v~~Cp~~ai~~~~---~-~~~~id~~~C~~Cm~Ci~~~p~-a~~ 289 (402)
T TIGR02064 247 ENEVVNRCPTKAISWDG---S-KELSIDNRECVRCMHCINKMPK-ALH 289 (402)
T ss_pred chhHhhcCCccccccCC---C-ceEEEcchhcCcCccccccCcc-ccc
Confidence 35699999999999864 2 3799999999999999999996 654
No 451
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.02 E-value=0.02 Score=59.11 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCC
Q psy14497 132 DLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSR 203 (561)
Q Consensus 132 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~ 203 (561)
++.+.|.+.+++.|++++.+++|+++..+ ++.+..+.+.+ |+ ...+++|.||.|+|..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~------g~-------~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRN------HG-------DIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeC------Cc-------eEEEECCEEEEeCCCc
Confidence 46677888888899999999999999865 44454444321 11 1368999999999964
No 452
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.01 E-value=0.00046 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=15.2
Q ss_pred EEccCCCccCCcccccCCCCCeeE
Q psy14497 524 QINAQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 524 ~~~~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
++|.++||+||.|..+||.++|+.
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~ 25 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDA 25 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-
T ss_pred EECcccccChhhHHhHcCccceee
Confidence 689999999999999999876653
No 453
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=97.00 E-value=0.00023 Score=63.37 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=43.2
Q ss_pred EEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCC---------cccccCCCCCeeEEC
Q psy14497 483 ILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCK---------TCDIKDPTQNIEWIT 549 (561)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~cp~~~i~~~~ 549 (561)
..++.+.|+. ++.|+..||.+++.+.... ...++|..|+ .|...||++||+|..
T Consensus 90 ~~i~~~~C~~------C~~C~~aCP~~ai~~~~~~-------~~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~ 152 (161)
T TIGR02951 90 VLVDQDKCIG------CRYCVWACPYGAPQYDPQQ-------GVMGKCDGCYDRVEKGLRPACVDACPMRALDFGP 152 (161)
T ss_pred EEECHHhCCC------chHHHhhCCCCCcEEcCCC-------CccccCCCCHHHHHCCCCCcchhhccccceEEec
Confidence 3457788987 4579999999998876431 1457999998 999999999999964
No 454
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.00 E-value=0.00021 Score=70.35 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=42.0
Q ss_pred EcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCc-------------ccccCCCCCeeE
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKT-------------CDIKDPTQNIEW 547 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~-------------C~~~cp~~~i~~ 547 (561)
.+|.+.|+. |+.|+.+||.+++.+..+. ......+|..|+. |+.+||++||.+
T Consensus 139 ~id~dkCig------Cg~Cv~aCP~gai~~~~~~-----~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~f 204 (328)
T PRK10882 139 HYDKDVCTG------CRYCMVACPFNVPKYDYNN-----PFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIF 204 (328)
T ss_pred cCCHHHcCc------ccHHHHhCCccceeccccc-----cccceeecccccccchhhhhcCCCChhhhhccccceEe
Confidence 457788987 4679999999998875431 1234578999999 999999999986
No 455
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=96.99 E-value=0.00039 Score=63.15 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=44.2
Q ss_pred cCCCCcccccccccccccccccCCeeEEEEeecC----c----eeEEEEccCCCccCC------cccccCCCCCeeEEC
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN----K----IQHLQINAQNCIHCK------TCDIKDPTQNIEWIT 549 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~----~----~~~~~~~~~~C~~Cg------~C~~~cp~~~i~~~~ 549 (561)
+|.+.|+. ++.|+.+||.+++++..... + .....++.+.|..|+ .|..+||++||++..
T Consensus 84 i~~~~C~~------C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~ 156 (181)
T PRK10330 84 VMQERCIG------CKTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVD 156 (181)
T ss_pred eChhhCCC------cchhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeC
Confidence 47788987 45699999999998764210 0 011245678999999 999999999999854
No 456
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.97 E-value=0.00075 Score=72.34 Aligned_cols=37 Identities=41% Similarity=0.675 Sum_probs=34.1
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~ 61 (561)
..+++|+||||+|.||.++|..|+.. |++|+|+|+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~------g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDA------GLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCC------CCeEEEEeCCC
Confidence 34689999999999999999999977 99999999985
No 457
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.90 E-value=0.00073 Score=72.73 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCch
Q psy14497 133 LVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH 205 (561)
Q Consensus 133 l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~ 205 (561)
...+|.....+.|++|+.++.|++|..+ ++++++|++.+. +.. ...+.++.||+|.|+-.+
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~-----~~~------~~~~~ak~VIlaAGai~S 256 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKG-----GRK------EHTEANKEVILSAGAINS 256 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeC-----CcE------EEEEEeeeEEEccCCCCC
Confidence 3444444333568999999999999986 678889987431 110 124589999999998444
No 458
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.88 E-value=0.00025 Score=35.28 Aligned_cols=15 Identities=33% Similarity=0.673 Sum_probs=13.1
Q ss_pred CccCCcccccCCCCC
Q psy14497 530 CIHCKTCDIKDPTQN 544 (561)
Q Consensus 530 C~~Cg~C~~~cp~~~ 544 (561)
|++|+.|..+||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 788999999999876
No 459
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.83 E-value=0.0079 Score=66.24 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=30.2
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCC-cEEEEcCCC
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKGS 61 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~-~V~ViEk~~ 61 (561)
.-.|+|||||..|+-+|..|++. |. +|+|+++++
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~------Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRL------GAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCCeEEEeeecC
Confidence 46899999999999999999999 86 599998765
No 460
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=96.81 E-value=0.00035 Score=67.43 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=41.8
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCC---------cccccCCCCCeeEE
Q psy14497 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCK---------TCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~cp~~~i~~~ 548 (561)
+..+|.+.|+.| +.|+.+||.+++++.+.. ....+|..|. .|+.+||++||+|.
T Consensus 118 ~V~id~dkCigC------~~Cv~aCP~~a~~~~~~~-------~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg 180 (283)
T TIGR01582 118 IVDFDHSKCIGC------GYCIVGCPFNIPRYDKVD-------NRPYKCTLCIDRVSVGQEPACVKTCPTNAISFG 180 (283)
T ss_pred cEEEeHHHCCcc------hHHHhhCCCCCcEEcCCC-------CChhhhcccccccccCCCChHhCcccHhhEEEC
Confidence 334688999884 579999999999886531 1245788884 89999999999883
No 461
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=96.80 E-value=0.00067 Score=61.36 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=44.4
Q ss_pred ceEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccC------C---cccccCCCCCeeE
Q psy14497 481 HLILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHC------K---TCDIKDPTQNIEW 547 (561)
Q Consensus 481 h~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C------g---~C~~~cp~~~i~~ 547 (561)
-|.++|.++|+.| +.|+..||-++..++++. + -.++|..| | .|+..||++|+.|
T Consensus 93 GiV~vd~d~CIGC------~yCi~ACPyga~~~~~~~---~----~~~KCt~C~~ri~~g~~PaCV~~CP~~A~~f 155 (203)
T COG0437 93 GIVLVDKDLCIGC------GYCIAACPYGAPQFNPDK---G----VVDKCTFCVDRVAVGKLPACVEACPTGALIF 155 (203)
T ss_pred CEEEecCCcccCc------hHHHhhCCCCCceeCccc---C----cccccCcchhhHhcCCCCcccccCCcccccc
Confidence 4556799999994 679999999998887631 1 16899999 8 9999999999875
No 462
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.77 E-value=0.025 Score=56.97 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=70.1
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce---eecceeChhhHHhhccccccCCccccccc
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI---LSGAIIDPRSIFELFPKEKLNKLFNTPVI 96 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~---~~G~~~~~~~l~~l~~~~~~~~~~~~~~~ 96 (561)
.....|+|||||-++.-.+..|.+. .+..+|+++=|++.....- ..-..++|..++.+... ..
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~----~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l----------~~ 253 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRR----GPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSL----------PD 253 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-----TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-----------H
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhC----CCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcC----------CH
Confidence 4568999999999999999999998 2235899998876542111 11134455444332110 00
Q ss_pred hhhhhhhcCCCCcccCCCCCCceeecCCcE-EeeHHHHHHHHHHHH------HHCCCEEEcCceEeEEEEcCCCCEEEEE
Q psy14497 97 EERFLFLSSKKSYKIPSWILPICFKNHGNY-IISLSDLVRWMGKKA------ENMGIDIFSGFSASEILYDSKNNVCGIA 169 (561)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~i~r~~l~~~L~~~a------~~~Gv~i~~g~~v~~i~~~~~g~v~~V~ 169 (561)
..+...+..... ..| .|+. ++.+.|++.. .+..+.++.+++|+++..++++. +.+.
T Consensus 254 ~~R~~~l~~~~~---------------~ny~~i~~-~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~-~~l~ 316 (341)
T PF13434_consen 254 EERRELLREQRH---------------TNYGGIDP-DLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG-VRLT 316 (341)
T ss_dssp HHHHHHHHHTGG---------------GTSSEB-H-HHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS-EEEE
T ss_pred HHHHHHHHHhHh---------------hcCCCCCH-HHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE-EEEE
Confidence 111111111000 011 1222 3333333322 12348999999999998875443 3455
Q ss_pred ecccccccCCceecccccCeEEecCEEEEccCC
Q psy14497 170 TNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 170 ~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
+.+. ..|+ ..++++|.||.|+|.
T Consensus 317 ~~~~---~~~~-------~~~~~~D~VilATGy 339 (341)
T PF13434_consen 317 LRHR---QTGE-------EETLEVDAVILATGY 339 (341)
T ss_dssp EEET---TT---------EEEEEESEEEE---E
T ss_pred EEEC---CCCC-------eEEEecCEEEEcCCc
Confidence 5331 1121 257899999999994
No 463
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=96.75 E-value=0.00064 Score=70.73 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=40.1
Q ss_pred EcCCCCcccccccccccccc--cccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14497 484 LKNKKIPIHINFSIYAGPEA--RYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~--~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
.+|+++|..| +.|+ .-||+ +++.++ .++..+|..-|++||.|..+||..+|.
T Consensus 573 ~Vd~~~CtGC------~~C~~~~~Cps--i~~~~~---~~k~~id~~~C~GCg~C~~iCP~~a~~ 626 (640)
T COG4231 573 FVDEEKCTGC------GDCIVLSGCPS--IEPDPT---FKKARIDPSSCNGCGSCVEVCPSFAIK 626 (640)
T ss_pred eechhhcCCc------HHHHhhcCCce--EeecCC---CCceeecccccccchhhhhcCchhhee
Confidence 3588999884 4587 45886 334332 257999999999999999999999985
No 464
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.61 E-value=0.00071 Score=68.06 Aligned_cols=57 Identities=19% Similarity=0.414 Sum_probs=41.1
Q ss_pred cCCCCcccccccccccccccccCCeeEE-EEee------------cCceeEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYE-FIIE------------KNKIQHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~-~~~~------------~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
.| +.|.. |+.|..+||..+-. ++.. +.-.....+|...|++||.|...||..+|+|+
T Consensus 222 Vd-d~Ctg------Cg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~ 291 (622)
T COG1148 222 VD-DKCTG------CGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLN 291 (622)
T ss_pred cc-ccccc------cccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccC
Confidence 35 78877 46899999986421 1110 00013467899999999999999999999985
No 465
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.60 E-value=0.027 Score=65.09 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=73.2
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCC-cEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhh
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEI-KICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFL 101 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~-~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 101 (561)
-.|+|||+|+.|+-+|..|++. |. .|+|+|..+...
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~------G~~vV~vv~~~~~~~------------------------------------- 354 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA------GIAVVAIIDARADVS------------------------------------- 354 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCceEEEEccCcchh-------------------------------------
Confidence 5899999999999999999999 95 588998754320
Q ss_pred hhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCce
Q psy14497 102 FLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGII 181 (561)
Q Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~ 181 (561)
..+.+.+++.||+++.++.++++.. ++.+.+|++... +|
T Consensus 355 ---------------------------------~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~----~g-- 393 (985)
T TIGR01372 355 ---------------------------------PEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARN----GG-- 393 (985)
T ss_pred ---------------------------------HHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEec----CC--
Confidence 0133455678999999999998863 344555655310 11
Q ss_pred ecccccCeEEecCEEEEccCCCchhhHHHHHHcCC
Q psy14497 182 KKNFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNL 216 (561)
Q Consensus 182 ~~~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~ 216 (561)
++.++.+|.|+.+.|..... .+...++.
T Consensus 394 -----~~~~i~~D~V~va~G~~Pnt--~L~~~lg~ 421 (985)
T TIGR01372 394 -----AGQRLEADALAVSGGWTPVV--HLFSQRGG 421 (985)
T ss_pred -----ceEEEECCEEEEcCCcCchh--HHHHhcCC
Confidence 24579999999999987763 34443443
No 466
>KOG3851|consensus
Probab=96.60 E-value=0.0057 Score=58.48 Aligned_cols=40 Identities=20% Similarity=0.464 Sum_probs=33.2
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
...++.|+|||||-+|++.|..+.+.+ +.=+|.|+|....
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl----~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKL----GSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhc----CCCceEEecchhh
Confidence 356899999999999999999998873 3458999997753
No 467
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=96.59 E-value=0.00071 Score=73.48 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=37.1
Q ss_pred cCCCCccccccccccccccc--ccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCe
Q psy14497 485 KNKKIPIHINFSIYAGPEAR--YCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNI 545 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~--~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i 545 (561)
+|++.|+. |+.|+. .||+.. ..+ ....+|. .|+.||.|..+||.+||
T Consensus 547 id~~~C~~------C~~C~~~~~CP~~~--~~~-----~~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 547 VDQDKCIG------CKKCIKELGCPAIE--PED-----KEAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred EcCCcCCC------ccccccccCCCCcc--ccC-----CcceeCC-CCcCHHHHHhhCccccC
Confidence 47889988 457999 999644 221 2577888 79999999999999886
No 468
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=96.59 E-value=0.00055 Score=74.43 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=35.0
Q ss_pred CCCCcccccccccccccccccCCeeEEEE-----eecCceeEEEEccCCCccCCcccccCCCC
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFI-----IEKNKIQHLQINAQNCIHCKTCDIKDPTQ 543 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~-----~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~ 543 (561)
+...|+. |+.|+.+||.+.+-.. ....-.....++...|++||.|..+||.+
T Consensus 368 ~e~~CI~------CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 368 PEQPCIR------CGACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPSN 424 (695)
T ss_pred chhhcCC------cccHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCcccccCCCC
Confidence 4577888 4679999999986310 00000011235667899999999999976
No 469
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.57 E-value=0.016 Score=62.62 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=31.8
Q ss_pred cccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy14497 22 EYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSE 62 (561)
Q Consensus 22 ~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~ 62 (561)
.-+|+|||||+.|+-+|..|++. |.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~------g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRY------ASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHcc------CCEEEEEEeCCc
Confidence 36899999999999999999999 999999998753
No 470
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=96.54 E-value=0.0016 Score=62.61 Aligned_cols=48 Identities=19% Similarity=0.455 Sum_probs=33.9
Q ss_pred cccccccCCeeEEEEeecCceeEEEEc-cCCCccCCcccccCCCCCeeE
Q psy14497 500 GPEARYCPAGVYEFIIEKNKIQHLQIN-AQNCIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 500 ~~c~~~CP~~~~~~~~~~~~~~~~~~~-~~~C~~Cg~C~~~cp~~~i~~ 547 (561)
.-|..+||.+++.-.-......++..+ .++|++|+.|..+||.+++..
T Consensus 172 ~~C~~~CP~Ga~~~~~~~~~~~~i~~~~~~~C~~C~~C~~vCP~~~vl~ 220 (255)
T TIGR02163 172 GWCGHLCPLGAFYGLIGRKSLIKIAASDREKCTNCMDCFNVCPEPQVLR 220 (255)
T ss_pred chhhCcCCCcchhhhhhccCceEEEeeccccCeEcCCccCcCCCCceee
Confidence 459999999987422111112355555 899999999999999987543
No 471
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=96.53 E-value=0.0011 Score=60.05 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=40.5
Q ss_pred ccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14497 499 AGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 499 ~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
.++++.-||...++..+.-. .+..+|.++|++|+.|..+||.++|.....
T Consensus 11 ~g~~T~~yP~~~~~~~~~~r--g~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~ 60 (180)
T PRK12387 11 TGTATSSYPLEPIAVDKNFR--GKPEYNPQQCIGCAACVNACPSNALTVETD 60 (180)
T ss_pred cCCccccCCCCCCCCCCCCC--CceEEChhhCcChhHHHHhcCccCeEeecc
Confidence 46889999988877544222 368999999999999999999999987643
No 472
>KOG0405|consensus
Probab=96.51 E-value=0.036 Score=53.81 Aligned_cols=43 Identities=26% Similarity=0.491 Sum_probs=37.6
Q ss_pred CCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCcee
Q psy14497 20 SIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHIL 68 (561)
Q Consensus 20 ~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~ 68 (561)
..+||.++||||-.|+++|...+.. |.+|.|+|..-..|+.-.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~------GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH------GAKVALCELPFGLGGTCV 60 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc------CceEEEEecCCCcCceEE
Confidence 3479999999999999999999999 999999998756666543
No 473
>KOG2495|consensus
Probab=96.41 E-value=0.016 Score=57.88 Aligned_cols=112 Identities=22% Similarity=0.386 Sum_probs=71.0
Q ss_pred CcccEEEECchhHHHHHHHHHHhccccC--------CCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccc
Q psy14497 21 IEYDVIIVGGGPSGLSAAIRLKQLAIKK--------NKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFN 92 (561)
Q Consensus 21 ~~~dVvIVGgGpAGLa~A~~La~~~~~~--------~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~ 92 (561)
.-..++||||||.|.-.|-.|+....++ ...++|+++|..+.+-.
T Consensus 217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~--------------------------- 269 (491)
T KOG2495|consen 217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN--------------------------- 269 (491)
T ss_pred heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH---------------------------
Confidence 3478999999999999999997543111 12467888887664300
Q ss_pred cccchhhhhhhcCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecc
Q psy14497 93 TPVIEERFLFLSSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNN 172 (561)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 172 (561)
+++ ..|.++-.+...+.|+++..++.|.++.. ....+.+.
T Consensus 270 ---------mFd--------------------------krl~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~- 309 (491)
T KOG2495|consen 270 ---------MFD--------------------------KRLVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTK- 309 (491)
T ss_pred ---------HHH--------------------------HHHHHHHHHHhhhccceeecccEEEeecC----cEEEEEcC-
Confidence 000 12333444445568999999999988842 12333332
Q ss_pred cccccCCceecccccCeEEecCEEEEccCCCch-hhHHHH
Q psy14497 173 FGINKEGIIKKNFQLGMELYAKYTLFAEGSRGH-LSKQII 211 (561)
Q Consensus 173 ~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S~-~~~~l~ 211 (561)
+|+. ++|.+-.+|.++|.... +.+.|.
T Consensus 310 -----~g~~-------~~iPYG~lVWatG~~~rp~~k~lm 337 (491)
T KOG2495|consen 310 -----DGEI-------EEIPYGLLVWATGNGPRPVIKDLM 337 (491)
T ss_pred -----CCce-------eeecceEEEecCCCCCchhhhhHh
Confidence 3432 57899999999996654 334443
No 474
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.40 E-value=0.0096 Score=63.48 Aligned_cols=109 Identities=27% Similarity=0.407 Sum_probs=77.3
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCceeecceeChhhHHhhccccccCCccccccchhhhhhh
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHILSGAIIDPRSIFELFPKEKLNKLFNTPVIEERFLFL 103 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~~~G~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (561)
.-+|||||.=||-+|..|... |.+|+|++-.+.. +++.+..
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~------Gm~~~Vvh~~~~l--------------MerQLD~------------------- 187 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDL------GMEVTVVHIAPTL--------------MERQLDR------------------- 187 (793)
T ss_pred CcEEEccchhhhHHHHHHHhC------CCceEEEeecchH--------------HHHhhhh-------------------
Confidence 369999999999999999999 9999999866543 1111000
Q ss_pred cCCCCcccCCCCCCceeecCCcEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceec
Q psy14497 104 SSKKSYKIPSWILPICFKNHGNYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKK 183 (561)
Q Consensus 104 ~~~~~~~~~~~~~p~~~~~~~~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~ 183 (561)
.--+.|...+++.|++++.+...+++.. ++.+.+|+.
T Consensus 188 ----------------------------~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~------------- 224 (793)
T COG1251 188 ----------------------------TAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRF------------- 224 (793)
T ss_pred ----------------------------HHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEee-------------
Confidence 1123466677789999999887777653 345555554
Q ss_pred ccccCeEEecCEEEEccCCCchhhHHHHHHcCCCC
Q psy14497 184 NFQLGMELYAKYTLFAEGSRGHLSKQIIKKFNLDN 218 (561)
Q Consensus 184 ~f~~g~~i~ad~vV~AdG~~S~~~~~l~~~~g~~~ 218 (561)
.||..+.||+||-|+|.+-.+ .+.+..|+..
T Consensus 225 --~DG~~i~ad~VV~a~GIrPn~--ela~~aGlav 255 (793)
T COG1251 225 --ADGTEIPADLVVMAVGIRPND--ELAKEAGLAV 255 (793)
T ss_pred --cCCCcccceeEEEeccccccc--HhHHhcCcCc
Confidence 557899999999999987763 3444455543
No 475
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=96.39 E-value=0.0024 Score=48.72 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=31.9
Q ss_pred eEEEEccCCCccCCcccccCCCCCeeEECCCCCCC-CCCC
Q psy14497 521 QHLQINAQNCIHCKTCDIKDPTQNIEWITPEGGSG-TNYP 559 (561)
Q Consensus 521 ~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p~g~~g-~~~~ 559 (561)
.+.++|++.|+.|+.|-.-||..+|.+ ...|..+ ++|.
T Consensus 28 ~rPv~d~~kCi~C~~C~~yCPe~~i~~-~~~~~~~~idYd 66 (91)
T COG1144 28 FRPVVDEDKCINCKLCWLYCPEPAILE-EEGGYKVRIDYD 66 (91)
T ss_pred EeeEEcccccccCceeEEECCchheee-ccCCccceeEcc
Confidence 468899999999999999999999988 5555555 6774
No 476
>KOG1336|consensus
Probab=96.38 E-value=0.016 Score=58.80 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=33.1
Q ss_pred HHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCC
Q psy14497 142 ENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGS 202 (561)
Q Consensus 142 ~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~ 202 (561)
++.|+++++++.|+.++..+. .|. +.+|.+++++.+|+|+|.
T Consensus 138 ke~gIe~~~~t~v~~~D~~~K----~l~---------------~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLASK----TLV---------------LGNGETLKYSKLIIATGS 179 (478)
T ss_pred hhcCceEEEcceeEEeecccc----EEE---------------eCCCceeecceEEEeecC
Confidence 357999999999999987522 233 345789999999999997
No 477
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.37 E-value=0.011 Score=62.79 Aligned_cols=33 Identities=33% Similarity=0.561 Sum_probs=30.6
Q ss_pred ccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCC
Q psy14497 23 YDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGS 61 (561)
Q Consensus 23 ~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~ 61 (561)
..|+|||+|++|+++|..|+++ |++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4799999999999999999999 99999999764
No 478
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=96.21 E-value=0.0019 Score=66.29 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=29.7
Q ss_pred CCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCCcccccCCC
Q psy14497 487 KKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPT 542 (561)
Q Consensus 487 ~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~ 542 (561)
.+.|+. |+.|+.+||.++ .+.+ + ....|+.|+.|..+||.
T Consensus 230 ~~~Ci~------C~~Cv~vCP~gi-~~~~---~------~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 230 LGDCID------CNLCVQVCPTGI-DIRD---G------LQLECINCGLCIDACDD 269 (434)
T ss_pred CCCCCC------hhhhHHhCCCCC-EeCC---C------CchhChhhhHHHHhCCC
Confidence 467876 467999999994 3221 1 23589999999999994
No 479
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=96.20 E-value=0.00095 Score=64.76 Aligned_cols=47 Identities=23% Similarity=0.491 Sum_probs=33.6
Q ss_pred cccccccCCeeEEEEeecCceeEEE-EccCCCccCCcccccCCCCCee
Q psy14497 500 GPEARYCPAGVYEFIIEKNKIQHLQ-INAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 500 ~~c~~~CP~~~~~~~~~~~~~~~~~-~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
..|..+||.+++.-.-......++. +|.++|++|+.|..+||.+++.
T Consensus 179 ~wC~~lCP~Ga~~~~~~~~~~~~i~~~d~~~C~~C~~C~~~CP~~~i~ 226 (271)
T PRK09477 179 GWCGHLCPLGAFYGLIGKKSLIRVKAHDRQKCTRCMDCFHVCPEPQVL 226 (271)
T ss_pred chhhccCCHHHHHHhcccccccccccCCcccCcccCCcCCcCCCccee
Confidence 4599999999764211111113455 8899999999999999988753
No 480
>KOG0063|consensus
Probab=96.19 E-value=0.0024 Score=63.45 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=39.9
Q ss_pred ceEEcCCCCcccc-cccccccccccccCC-----eeEEEEeecCceeEEEEccCCCccCCcccccCCCCCee
Q psy14497 481 HLILKNKKIPIHI-NFSIYAGPEARYCPA-----GVYEFIIEKNKIQHLQINAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 481 h~~~~~~~~~~~~-~~~~~~~~c~~~CP~-----~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
-|.|...+.|.-. | ..-|-+.||. -|+++.. .-.+..+-|++||.|..+||..||.
T Consensus 7 riaiv~~d~ckpk~c----~~eck~~cpv~~~gk~ci~V~~------~~~ise~lCigcgicvkkcpf~ai~ 68 (592)
T KOG0063|consen 7 RIAIVSEDKCKPKKC----RQECKKSCPVVRTGKLCIEVTP------TAFISEELCIGCGICVKKCPFEAIQ 68 (592)
T ss_pred eEEEeeccccCchHH----HHHHHhcCCcccccceEEEEcC------cchhhHhhhccccceeeccCcceEE
Confidence 3444455555432 2 2469999996 3555543 2667889999999999999999996
No 481
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=96.17 E-value=0.0023 Score=56.63 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=22.9
Q ss_pred EEEEccCCCccCCcccccCCCCCeeEEC
Q psy14497 522 HLQINAQNCIHCKTCDIKDPTQNIEWIT 549 (561)
Q Consensus 522 ~~~~~~~~C~~Cg~C~~~cp~~~i~~~~ 549 (561)
...++.+.||+|+.|+.+||.+||++..
T Consensus 49 ~~~l~~~~CIgC~lCa~iCP~~aI~m~~ 76 (172)
T COG1143 49 RHVLDRDKCIGCGLCANICPANAITMET 76 (172)
T ss_pred eeeccccCCcchhHHHhhCCcCceEEEE
Confidence 4555666799999999999999998543
No 482
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.15 E-value=0.041 Score=62.36 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=39.3
Q ss_pred CCCCcccccccccccccccccCCeeEEEEeecC--ceeEEEEccCCCccCCcccccCCCCC
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFIIEKN--KIQHLQINAQNCIHCKTCDIKDPTQN 544 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~--~~~~~~~~~~~C~~Cg~C~~~cp~~~ 544 (561)
+.+.|..|.. -|+.|+.+||.+|....+.++ +...+....+.|++||.|+..||.++
T Consensus 884 ~~~rC~~C~~--~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~~~~~C~~CG~C~~~CP~~~ 942 (1019)
T PRK09853 884 EAARCLECNY--VCEKCVDVCPNRANVSIAVPGFQNRFQIVHLDAMCNECGNCAQFCPWNG 942 (1019)
T ss_pred cccccCCccc--ccchhhhhCCcccccccccCCcccCCceEEcCccCccccchhhhCCCCC
Confidence 5677888631 368999999999933222111 11234444599999999999999865
No 483
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=96.10 E-value=0.0017 Score=65.25 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=41.5
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCceeEEEEccCCCccCC---------cccccCCCCCeeE
Q psy14497 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNKIQHLQINAQNCIHCK---------TCDIKDPTQNIEW 547 (561)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~cp~~~i~~ 547 (561)
+.++|.+.|+.| +.|+.+||.+++.++... + ..++|.-|. .|+..||++|+.|
T Consensus 208 iV~ID~dkCiGC------g~CV~ACPygAI~~n~~~-g------~~~KCd~C~~Rie~G~pPaCVeaCP~~Ar~f 269 (492)
T TIGR01660 208 IVLIDQDKCRGW------RMCISGCPYKKIYFNWKT-G------KSEKCIFCYPRIEAGQPTVCSETCVGRIRYL 269 (492)
T ss_pred eEEEehhhccCh------HHHHHhCCCCCcEecCCC-C------ccccCCCChhHHhCCCCCcchhhcChhhhhh
Confidence 344688999984 579999999998886531 1 346999995 7999999998766
No 484
>KOG1238|consensus
Probab=96.05 E-value=0.0078 Score=63.45 Aligned_cols=40 Identities=35% Similarity=0.564 Sum_probs=35.5
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSEL 63 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~ 63 (561)
...+||.+|||||-||..+|-.|++. |..+|.|+|++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn-----~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN-----PNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC-----CCceEEEEecCCCC
Confidence 34579999999999999999999986 57999999998765
No 485
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=95.97 E-value=0.48 Score=49.95 Aligned_cols=38 Identities=37% Similarity=0.443 Sum_probs=35.6
Q ss_pred cEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcCCCCCCCce
Q psy14497 24 DVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEKGSELGAHI 67 (561)
Q Consensus 24 dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk~~~~g~~~ 67 (561)
+|+|||||+|||++|+.|++. |++|+|||+++.+|++.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~------G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA------GHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCc
Confidence 589999999999999999999 99999999999988854
No 486
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=95.96 E-value=0.0052 Score=67.11 Aligned_cols=58 Identities=12% Similarity=-0.014 Sum_probs=39.5
Q ss_pred eEEcCCCCcccccccccccccccccCC----eeEEEEeecCceeEEEEc---cCCCccCCcccccCCCCCee
Q psy14497 482 LILKNKKIPIHINFSIYAGPEARYCPA----GVYEFIIEKNKIQHLQIN---AQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~c~~~CP~----~~~~~~~~~~~~~~~~~~---~~~C~~Cg~C~~~cp~~~i~ 546 (561)
....|.++|+. |+.|+++|=. +++.+... +....+... .-.|..||.|..+||++||.
T Consensus 136 ~i~~d~~rCI~------C~rCvr~c~e~~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~ 200 (603)
T TIGR01973 136 LIKTEMTRCIH------CTRCVRFANEVAGVEDLGVIGR-GNNVEIGTYEGKTLESELSGNLIDICPVGALT 200 (603)
T ss_pred CeEecCCcCcc------ccHHHHHHHHhhCCceEEEecc-CCCCEEecCCCCCCCCcccCChHhhCCccccc
Confidence 34579999999 4679999953 55655432 111222221 22688999999999999985
No 487
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=95.81 E-value=0.0048 Score=53.85 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=42.0
Q ss_pred eEEcCCCCcccccccccccccccccCCeeEEEEeecCc-eeEEEEccCCCccCC---cccccCCCCCeeEE
Q psy14497 482 LILKNKKIPIHINFSIYAGPEARYCPAGVYEFIIEKNK-IQHLQINAQNCIHCK---TCDIKDPTQNIEWI 548 (561)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~-~~~~~~~~~~C~~Cg---~C~~~cp~~~i~~~ 548 (561)
+.+.|.++|+. ++.|..+||.|+++++.. +. .+...+.-+.|.+=- .|..+||++|++..
T Consensus 76 ~v~V~~ekCiG------C~~C~~aCPfGai~~~~~-~~~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv 139 (165)
T COG1142 76 AVQVDEEKCIG------CKLCVVACPFGAITMVSY-PVAAKAVAVKCDLCAGREVGPACVEACPTEALELV 139 (165)
T ss_pred ceEEchhhccC------cchhhhcCCcceEEEEee-cCcchhhhhhcccccCccCCCceeeeCCHHHhhcc
Confidence 33458899999 467999999999998764 11 122344445555444 49999999998753
No 488
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=95.80 E-value=0.0036 Score=65.07 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCCCcccccccccccccccccCCeeEEEEe-----ecCceeEEEEccCCCccCCcccccCCCC
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVYEFII-----EKNKIQHLQINAQNCIHCKTCDIKDPTQ 543 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~-----~~~~~~~~~~~~~~C~~Cg~C~~~cp~~ 543 (561)
..+.|+. |+.|..+||.+++...- ...-......+...|++||.|..+||.+
T Consensus 361 ~~~~Ci~------Cg~C~~vCP~~l~p~~l~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 361 PEKPCIR------CGKCVQVCPMNLLPQQLNWLALADEFDEAEEHNLMDCIECGCCSYVCPSN 417 (435)
T ss_pred cCCcCcC------ccchhhhCccchhhHHHHHHhhhcccchhhcCCCCcCCcCCCcccccCCC
Confidence 4578887 46799999988542100 0000112345778999999999999974
No 489
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.79 E-value=0.069 Score=57.96 Aligned_cols=39 Identities=18% Similarity=-0.001 Sum_probs=31.5
Q ss_pred cCCEEEEecCCccCCCcccccchHHHHHHHHHHHHHHHHHhcCC
Q psy14497 331 FDGGAFIGCNAGFMNVSRIKGIHTSIKSGILVADSIFKKICSNN 374 (561)
Q Consensus 331 ~~~v~lvGDAA~~~~P~~g~G~~~Ai~~a~~lA~~l~~~l~~~~ 374 (561)
.++|+++||++. ...-+..|+.+|..+|..|.+.|.+..
T Consensus 409 ~~~Vfa~GD~~~-----g~~~v~~Av~~G~~aA~~i~~~L~g~~ 447 (564)
T PRK12771 409 RPGVFAGGDMVP-----GPRTVTTAIGHGKKAARNIDAFLGGEP 447 (564)
T ss_pred CCCEEeccCcCC-----CchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 379999999974 223567899999999999999997543
No 490
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=95.72 E-value=0.005 Score=43.01 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=8.8
Q ss_pred EEEEccCCCccCCcccccCCC
Q psy14497 522 HLQINAQNCIHCKTCDIKDPT 542 (561)
Q Consensus 522 ~~~~~~~~C~~Cg~C~~~cp~ 542 (561)
++.+|.++|++||.|..+||.
T Consensus 1 ki~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 1 KIVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp -----TT------TTGGG-TT
T ss_pred CCccCcccCcCCcChHHHccc
Confidence 367899999999999999998
No 491
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=95.69 E-value=0.0045 Score=49.16 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=25.6
Q ss_pred eEEEEccCCCccCCcccccCCCCCeeEE
Q psy14497 521 QHLQINAQNCIHCKTCDIKDPTQNIEWI 548 (561)
Q Consensus 521 ~~~~~~~~~C~~Cg~C~~~cp~~~i~~~ 548 (561)
..+.+|.++|++|+.|..+||.++|++.
T Consensus 14 ~~~~i~~~~Ci~C~~Cv~~CP~~~i~~~ 41 (91)
T TIGR02936 14 FVTSIDQEKCIGCGRCYKVCGRDVLTLK 41 (91)
T ss_pred eeEEECHhHCCCcchHHHHcChhhceee
Confidence 4678899999999999999999999885
No 492
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=95.66 E-value=0.0047 Score=50.24 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=26.6
Q ss_pred eEEEEccCCCccCCcccccCCCCCeeEECC
Q psy14497 521 QHLQINAQNCIHCKTCDIKDPTQNIEWITP 550 (561)
Q Consensus 521 ~~~~~~~~~C~~Cg~C~~~cp~~~i~~~~p 550 (561)
..+.+|.++|++|+.|..+||.++|.+...
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~ 38 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLAMRID 38 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhccccc
Confidence 468889999999999999999999988643
No 493
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=95.63 E-value=0.0048 Score=60.80 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=33.3
Q ss_pred CCcccccccccccccccccCCeeEEEEeec---------------CceeEEEEccCCC-----c-----cCCcccccCCC
Q psy14497 488 KIPIHINFSIYAGPEARYCPAGVYEFIIEK---------------NKIQHLQINAQNC-----I-----HCKTCDIKDPT 542 (561)
Q Consensus 488 ~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~---------------~~~~~~~~~~~~C-----~-----~Cg~C~~~cp~ 542 (561)
+.|.. |+.|++.||.++|+.+++. ++..+..+|..+| . .||.|..+||+
T Consensus 205 ~fC~~------C~~C~~~CP~~Ai~~~~~psw~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~C~~C~~~CPf 278 (314)
T TIGR02486 205 KFCET------CGKCADECPSGAISKGGEPTWDPEDSNGDPPGENNPGLKWQYDGWRCLLFRCYNEGGGGCGVCQAVCPF 278 (314)
T ss_pred ccCcc------hhHHHhhCCccccCCCCCCcccccccccccccccCCCcccccchhhcccccccCCCCCCCCCCeeECCC
Confidence 56766 4679999999998765321 0111233455554 5 59999999998
Q ss_pred C
Q psy14497 543 Q 543 (561)
Q Consensus 543 ~ 543 (561)
.
T Consensus 279 ~ 279 (314)
T TIGR02486 279 N 279 (314)
T ss_pred C
Confidence 5
No 494
>KOG4716|consensus
Probab=95.62 E-value=0.012 Score=56.80 Aligned_cols=35 Identities=37% Similarity=0.708 Sum_probs=32.5
Q ss_pred CCCcccEEEECchhHHHHHHHHHHhccccCCCCCcEEEEcC
Q psy14497 19 ESIEYDVIIVGGGPSGLSAAIRLKQLAIKKNKEIKICVLEK 59 (561)
Q Consensus 19 ~~~~~dVvIVGgGpAGLa~A~~La~~~~~~~~G~~V~ViEk 59 (561)
.+.+||.+|||||.+||+||-..+.. |.+|.++|-
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~------G~kV~~lDf 50 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADL------GAKVACLDF 50 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhc------CCcEEEEee
Confidence 45689999999999999999999999 999999984
No 495
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=95.60 E-value=0.0038 Score=61.24 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=34.5
Q ss_pred CCcccccccccccccccccCCeeEEEEeecCce--eEEEEccCCCc-------------cCCcccccCCCCCeeEECCCC
Q psy14497 488 KIPIHINFSIYAGPEARYCPAGVYEFIIEKNKI--QHLQINAQNCI-------------HCKTCDIKDPTQNIEWITPEG 552 (561)
Q Consensus 488 ~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~~--~~~~~~~~~C~-------------~Cg~C~~~cp~~~i~~~~p~g 552 (561)
+.|-. |..|+++||++++.-...-..+ .++.-..-.|. +|+.|..+||-. +|..++.
T Consensus 185 ~~Cg~------C~~CldaCPt~Al~~~~~~~~~~cis~lt~~~~~~p~e~r~~~~n~iygCd~C~~vCPwn--r~~~~~~ 256 (337)
T COG1600 185 DHCGS------CTRCLDACPTGALVAPYTVDARRCISYLTIEKGGAPEEFRPLIGNRIYGCDICQKVCPWN--RFAQLTS 256 (337)
T ss_pred ccChh------hHHHHhhCCcccccCCCccchhHHhhhhhhhccCCcHHHHHhccCceecCchHHHhCCcc--ccccccc
Confidence 66766 4579999999996532210000 01111222333 799999999976 6666654
Q ss_pred C
Q psy14497 553 G 553 (561)
Q Consensus 553 ~ 553 (561)
.
T Consensus 257 ~ 257 (337)
T COG1600 257 E 257 (337)
T ss_pred c
Confidence 3
No 496
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.60 E-value=0.17 Score=57.71 Aligned_cols=59 Identities=12% Similarity=0.289 Sum_probs=39.4
Q ss_pred CCCCcccccccccccccccccCCeeE-EEEe-ecCceeEEEEccCC-CccCCcccccCCCCCeeE
Q psy14497 486 NKKIPIHINFSIYAGPEARYCPAGVY-EFII-EKNKIQHLQINAQN-CIHCKTCDIKDPTQNIEW 547 (561)
Q Consensus 486 ~~~~~~~~~~~~~~~~c~~~CP~~~~-~~~~-~~~~~~~~~~~~~~-C~~Cg~C~~~cp~~~i~~ 547 (561)
+.+.|..|.. .|+.|+.+||.+++ .+.. ...+ ....++.+. |++||.|..+||+++..+
T Consensus 879 ~~~rC~~c~~--~Cg~Cv~vCP~~Aii~i~~~~~~~-~~~~i~~d~~C~~CG~C~~vCP~~a~~~ 940 (1012)
T TIGR03315 879 ESQRCLECSY--VCEKCVDVCPNRANIVIYVPGFRD-QFQIVHLDGMCNECGNCATFCPYDGAPY 940 (1012)
T ss_pred ccccccCCCC--CCCChhhhCChhhhhccccccccC-CceeeecCccccccchHHHhCCCCcccc
Confidence 4578887542 47899999999974 3321 0011 122344444 999999999999998754
No 497
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=95.60 E-value=0.0039 Score=35.55 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=18.1
Q ss_pred cCCCCcccccccccccccccccCCeeEE
Q psy14497 485 KNKKIPIHINFSIYAGPEARYCPAGVYE 512 (561)
Q Consensus 485 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~ 512 (561)
+|.+.|+. ++.|+.+||.+|++
T Consensus 3 id~~~C~~------Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 3 IDPDKCIG------CGRCVEACPFDAIT 24 (24)
T ss_dssp EETTTSSS-------THHHHHSTTSSEE
T ss_pred EchHHCCC------cchhhhhcccccCC
Confidence 57889988 46799999999975
No 498
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.59 E-value=0.0021 Score=36.59 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=18.0
Q ss_pred EcCCCCcccccccccccccccccCCeeE
Q psy14497 484 LKNKKIPIHINFSIYAGPEARYCPAGVY 511 (561)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~c~~~CP~~~~ 511 (561)
.+|+++|+. ++.|+.+||.+|+
T Consensus 3 ~id~~~C~~------Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 3 VIDPDKCIG------CGDCVRVCPEGAI 24 (24)
T ss_pred EEChhhCcC------hhHHHHhcchhcC
Confidence 358899988 4679999999874
No 499
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=95.46 E-value=0.011 Score=66.69 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=39.2
Q ss_pred eEEcCCCCcccccccccccccccccC----CeeEEEEeecCceeEEEE---ccCCCccCCcccccCCCCCee
Q psy14497 482 LILKNKKIPIHINFSIYAGPEARYCP----AGVYEFIIEKNKIQHLQI---NAQNCIHCKTCDIKDPTQNIE 546 (561)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~c~~~CP----~~~~~~~~~~~~~~~~~~---~~~~C~~Cg~C~~~cp~~~i~ 546 (561)
....|.+.|+. |+.|+++|= .+++.+..- +....+.. ..-.|.-||.|..+||++||+
T Consensus 144 ~i~~d~~rCI~------C~rCvr~c~ev~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~ 208 (797)
T PRK07860 144 QVLLDRERCVL------CARCTRFSDQIAGDPFIDLQER-GALQQVGIYEGEPFQSYFSGNTVQICPVGALT 208 (797)
T ss_pred ceeeccccccc------CcHHHHHHHhhcCCcEEEeeec-CCCCEEecCCCCCcCccccCCchhhCCccccc
Confidence 34579999999 467999995 245555432 11122222 234678899999999999996
No 500
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.38 E-value=0.014 Score=60.90 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=42.5
Q ss_pred cEEeeHHHHHHHHHHHHHHCCCEEEcCceEeEEEEcCCCCEEEEEecccccccCCceecccccCeEEecCEEEEccCCCc
Q psy14497 125 NYIISLSDLVRWMGKKAENMGIDIFSGFSASEILYDSKNNVCGIATNNFGINKEGIIKKNFQLGMELYAKYTLFAEGSRG 204 (561)
Q Consensus 125 ~~~i~r~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~~~~~~g~~~~~f~~g~~i~ad~vV~AdG~~S 204 (561)
.+....+.+...+...+...|.+|+++++|++|..++ +. +.|.+ ++|.+++||.||.|.....
T Consensus 203 ~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~-v~v~~---------------~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 203 GLTVGMGGLSLALALAAEELGGEIRLNTPVTRIERED-GG-VTVTT---------------EDGETIEADAVISAVPPSV 265 (450)
T ss_dssp TEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEES-SE-EEEEE---------------TTSSEEEESEEEE-S-HHH
T ss_pred ceeecccchhHHHHHHHhhcCceeecCCcceeccccc-cc-ccccc---------------ccceEEecceeeecCchhh
Confidence 4444455555566666666677999999999998863 33 33444 3456899999999988543
Q ss_pred h
Q psy14497 205 H 205 (561)
Q Consensus 205 ~ 205 (561)
.
T Consensus 266 l 266 (450)
T PF01593_consen 266 L 266 (450)
T ss_dssp H
T ss_pred h
Confidence 3
Done!