BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14498
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P59927|SSB_CUPNH Single-stranded DNA-binding protein OS=Cupriavidus necator (strain
ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ssb PE=3
SV=1
Length = 188
Score = 176 bits (447), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 116/171 (67%), Gaps = 2/171 (1%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MASVNKVI++GNLG DPE RYM +GDAV N+ IATT+ ++DK SGE +E TEWHR++ +
Sbjct: 1 MASVNKVILVGNLGADPEVRYMPSGDAVANLRIATTDRYKDKQSGEMKEATEWHRVSMFG 60
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNEKNIS 120
KLA+I QYL+KGS +YIEGR++TRKW ++ G +KY TE++AD MQMLG R ++ +
Sbjct: 61 KLAEIAGQYLRKGSSVYIEGRIRTRKWQDQSGQDKYSTEIVADQMQMLGGRGGASDGDSD 120
Query: 121 NNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF 171
+ + + A ++ T + ++ QP P + F + ++D+PF
Sbjct: 121 SGTDRSASQQSPASAQRSAPTGQRQPPARRQ-PAQP-PSNGFGDFNEDIPF 169
>sp|P59930|SSB_HAEDU Single-stranded DNA-binding protein OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=ssb PE=3 SV=1
Length = 176
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 116/177 (65%), Gaps = 7/177 (3%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MA +NKVII+GNLG DPE R M NG+AV N+S+AT+E+W DKN+GE+RE+TEWHRI FYR
Sbjct: 1 MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYR 60
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNEKNIS 120
+ A++ QYL+KGSQ+Y+EGRL+TRKW ++ G ++Y TE+ D +QMLG R +
Sbjct: 61 RQAEVAGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQAGDVATH 120
Query: 121 NNLENNFFNIMSARKNYTSNTNN------EKEKSKENFKTQPLPISNFLEADDDVPF 171
N + + S + NY +N + + + +T+P S DDD+PF
Sbjct: 121 QN-QAGWNAPASTQNNYNQGASNYNPNQTQAYSAPQTNRTKPAAESVMDNFDDDIPF 176
>sp|P44409|SSB_HAEIN Single-stranded DNA-binding protein OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ssb PE=3
SV=1
Length = 168
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 116/172 (67%), Gaps = 5/172 (2%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MA +NKVII+G+LG DPE R M NGDAV N+S+AT+E+W D+N+GE+RE+TEWHRI FYR
Sbjct: 1 MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYR 60
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNEKNIS 120
+ A+I +YL+KGSQ+Y+EGRL+TRKW ++ G ++Y TE+ D MQMLG R N N
Sbjct: 61 RQAEICGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVMQMLGGR-NQNAGGYG 119
Query: 121 NNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEA-DDDVPF 171
N++ + AR+ +N N + S+ + ++ DDD+PF
Sbjct: 120 NDMGGAPQSSYQARQ---TNNGNSYQSSRPAPQQAAPQAEPPMDGFDDDIPF 168
>sp|Q89A53|SSB_BUCBP Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ssb PE=3 SV=1
Length = 166
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 120/176 (68%), Gaps = 15/176 (8%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS +NKVI+IG LG+DP+ RYM NG AVTN+++AT+E W+DKN+GE +E TEWHRI F
Sbjct: 1 MASRGINKVILIGYLGQDPDVRYMQNGSAVTNITLATSETWKDKNNGEIKEKTEWHRIVF 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVI---ADNMQMLGSRKNTN 115
+ KLA+I +YLKKGSQ+YIEG LQTRKW ++ G+E+YITE+I MQMLGSR N++
Sbjct: 61 FNKLAEIAGEYLKKGSQVYIEGSLQTRKWKDQNGIERYITEIIVSVGGTMQMLGSR-NSS 119
Query: 116 EKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF 171
S+ L N N+ K S EK +E+F L +N D+D+PF
Sbjct: 120 SLTASSGLSKNNDNL---SKQLLS------EKKQESFNDSKLQNNNLDFDDEDIPF 166
>sp|Q82S98|SSB_NITEU Single-stranded DNA-binding protein OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=ssb PE=3 SV=1
Length = 149
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 112/171 (65%), Gaps = 22/171 (12%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MAS+NKV++IGNLGRDPE RYM +GDA+ N++IATT+ W+DK GEK+E TEWHR+ +
Sbjct: 1 MASLNKVMLIGNLGRDPEIRYMPSGDAMANLNIATTDTWKDKG-GEKQERTEWHRVVMFG 59
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNEKNIS 120
K A+I +YLKKGSQIYIEGRLQTRKWT+K VE+Y TE++AD MQMLG R +
Sbjct: 60 KQAEIAGEYLKKGSQIYIEGRLQTRKWTDKSNVERYTTEIVADRMQMLGGRSGGGSYDPP 119
Query: 121 NNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF 171
+ ++++ + +K N + F + +DD+PF
Sbjct: 120 ADRDHDY-------------QSQSTPPAKSN--------TGFDDMEDDIPF 149
>sp|Q8Y2B4|SSB_RALSO Single-stranded DNA-binding protein OS=Ralstonia solanacearum
(strain GMI1000) GN=ssb PE=3 SV=1
Length = 178
Score = 166 bits (419), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MASVNKVII+GNLG DPETRYM +GDAVTN+ +ATT+ ++DK SGE RE TEWHRI F+
Sbjct: 1 MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFG 60
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+LA+I +YLKKGSQ+Y+EGRL+TR+W K+G ++Y TE++A+ MQMLGSR
Sbjct: 61 RLAEIAGEYLKKGSQVYVEGRLKTRQW-EKDGQKQYSTEIVAEQMQMLGSR 110
>sp|Q8K933|SSB_BUCAP Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ssb PE=3 SV=1
Length = 162
Score = 166 bits (419), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 126/176 (71%), Gaps = 19/176 (10%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI+IG+LG+DPE RYM NG+AV N+++AT+ENW+DKN+GE +E TEWHRI
Sbjct: 1 MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD---NMQMLGSRKNTN 115
+ KLA+I +YL+KGSQ+YIEG LQTRKW ++ G+E+Y TEVI + MQMLG+R N+N
Sbjct: 61 FGKLAEIAGEYLRKGSQVYIEGSLQTRKWQDQNGLERYTTEVIVNIGGTMQMLGNR-NSN 119
Query: 116 EKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF 171
N++ N ENN NI+ +K +N+ + EK S+ ++ DD++PF
Sbjct: 120 SHNVTLN-ENN--NIVKTKKIEINNSPKKIEKID----------SSEIDFDDEIPF 162
>sp|Q9KUW2|SSB_VIBCH Single-stranded DNA-binding protein OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=ssb PE=3
SV=1
Length = 177
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 110/177 (62%), Gaps = 6/177 (3%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI+IGNLG+DPE RYM +G AV N++IAT+E WRDK +GE++E TEWHR+T
Sbjct: 1 MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADN----MQMLGSRKNT 114
Y KLA++ +YL+KGSQ+YIEG+LQTRKW ++ G ++Y TEV+ MQMLG R
Sbjct: 61 YGKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQ 120
Query: 115 NEKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF 171
+ + + + ++S +QP ++ DDD+PF
Sbjct: 121 GGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYSQPQYNEPPMDFDDDIPF 177
>sp|Q8L2A6|SSB_PROVU Single-stranded DNA-binding protein OS=Proteus vulgaris GN=ssb PE=3
SV=1
Length = 195
Score = 162 bits (411), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 116/179 (64%), Gaps = 8/179 (4%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GN+G+DPE RYM NG AV N+++AT+E WRDK +GE +E TEWHR+
Sbjct: 1 MASRGVNKVILVGNVGQDPEVRYMPNGGAVANLTLATSETWRDKQTGESKEKTEWHRVVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEV---IADNMQMLGSRKNTN 115
+ KLA+I +++KKGSQIYIEG LQTRKWT++ GVEKY TEV + MQMLG R+ N
Sbjct: 61 FGKLAEITGEFVKKGSQIYIEGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGN 120
Query: 116 EKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNF---LEADDDVPF 171
+ +N N + + + T ++ + + QP N ++ +DD+PF
Sbjct: 121 DNQNNNAGSNQGWGQPQQPQPNNNQTPAQQLNQRSQGQNQPQGHGNSSQPIDFNDDIPF 179
>sp|Q9RHF4|SSB2_SALTI Single-stranded DNA-binding protein 2 OS=Salmonella typhi GN=ssb2
PE=3 SV=1
Length = 178
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 105/176 (59%), Gaps = 19/176 (10%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM NG AV N+S+AT++ W DK +G+K+E TEWHR+
Sbjct: 1 MASKGVNKVILVGNLGQDPEVRYMPNGGAVVNLSLATSDTWTDKQTGDKKERTEWHRVVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVI---ADNMQMLGSRKNTN 115
Y KLA+I +YL+KGSQ+YIEG L+TRKWT++ GVEKY TEV+ + MQMLG R +
Sbjct: 61 YGKLAEIASEYLRKGSQVYIEGALRTRKWTDQSGVEKYTTEVVVSQSGTMQMLGGRNSAG 120
Query: 116 EKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF 171
+ + E P +F DDD+PF
Sbjct: 121 SGQQQGGWGQPQQPAAPSHSGMPPQQHPANE-----------PPMDF---DDDIPF 162
>sp|Q9CJP4|SSB_PASMU Single-stranded DNA-binding protein OS=Pasteurella multocida
(strain Pm70) GN=ssb PE=3 SV=1
Length = 166
Score = 159 bits (402), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 115/174 (66%), Gaps = 11/174 (6%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MA VNKVII+GNLG DPE R M NG+AV N+S+AT+E+W DKN+ E+RE+TEWHRI FYR
Sbjct: 1 MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYR 60
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNEKNIS 120
+ A++ +YL+KGS++Y+EGRL+TRKW ++ G ++Y TE+ D +QML SR NE+
Sbjct: 61 RQAEVAGEYLRKGSKVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLDSR---NERQ-- 115
Query: 121 NNLENNFFNIMSARKNYTSNTNN-EKEKSKENFKTQPL--PISNFLEADDDVPF 171
+ + +A Y + T + + S+ K P P + +D++PF
Sbjct: 116 ---QTGGYAPQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFEEDNIPF 166
>sp|P57610|SSB_BUCAI Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ssb PE=3 SV=1
Length = 171
Score = 159 bits (402), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 121/176 (68%), Gaps = 10/176 (5%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI+IG+LG+DPE RYM NG+AV N+++AT+ENW+DKN+GE +E TEWHRI
Sbjct: 1 MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD---NMQMLGSRKNTN 115
+ KLA+I +YL+KGSQ+YIEG LQTRKW ++ G+E+Y TE+I + MQMLG+R N+N
Sbjct: 61 FGKLAEIAGEYLRKGSQVYIEGSLQTRKWQDQNGLERYTTEIIVNIGGTMQMLGNR-NSN 119
Query: 116 EKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF 171
+ ++ N +N+ + + E +S ++ P I + DD++PF
Sbjct: 120 LQAMTVNDKNSTGIKIKKTDAVEFDKKIETHESNKDLTHSPSEI----DFDDEIPF 171
>sp|Q8D254|SSB_WIGBR Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia
brevipalpis GN=ssb PE=3 SV=2
Length = 163
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 20/174 (11%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
+NKVI+IGNLG+DPE RY+ NG+A+TN+S+AT+ENWRDKN+GE +E TEWHR+ + KL
Sbjct: 5 GINKVILIGNLGQDPEVRYIPNGNAITNLSLATSENWRDKNTGESKEKTEWHRVILFGKL 64
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIA---DNMQMLGSRKNTNEKNI 119
A++ +YLKKGSQ+YIEG LQTRKW ++ G ++YITE++ MQMLG+R + +
Sbjct: 65 AEVAGEYLKKGSQVYIEGNLQTRKWQDQNGQDRYITEIVVGINGCMQMLGNRASYD---- 120
Query: 120 SNNLENNFFNIMSARKNYTSNTN--NEKEKSKENFKTQPLPISNFLEADDDVPF 171
+ A++ N N NEK+ KE+ K + NF DDD+PF
Sbjct: 121 --------YTKPEAKEWNKKNKNIINEKQDIKESKKNKIEEEINF---DDDIPF 163
>sp|P66849|SSB_NEIMB Single-stranded DNA-binding protein OS=Neisseria meningitidis
serogroup B (strain MC58) GN=ssb PE=3 SV=1
Length = 174
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 113/177 (63%), Gaps = 12/177 (6%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
S+NKVI+IG LGRDPE RYM NG+AV N S+AT+E W D+N G++ E TEWH IT YRKL
Sbjct: 2 SLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRN-GQRVERTEWHNITMYRKL 60
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNEKNISNN 122
A+I QYLKKG +Y+EGR+Q+RK+ K+G+E+ +++A+ M+MLG R NE +
Sbjct: 61 AEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKMLGGR---NENSGGAP 117
Query: 123 LENNFFNIMSA-------RKNYTSNTNNEKEKSKENFKTQPLPISNFLE-ADDDVPF 171
E + A + S+ + +++ + QP+P + +E DDD+PF
Sbjct: 118 YEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVPAAAPVEDIDDDIPF 174
>sp|P66848|SSB_NEIMA Single-stranded DNA-binding protein OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=ssb PE=3
SV=1
Length = 174
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 113/177 (63%), Gaps = 12/177 (6%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
S+NKVI+IG LGRDPE RYM NG+AV N S+AT+E W D+N G++ E TEWH IT YRKL
Sbjct: 2 SLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRN-GQRVERTEWHNITMYRKL 60
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNEKNISNN 122
A+I QYLKKG +Y+EGR+Q+RK+ K+G+E+ +++A+ M+MLG R NE +
Sbjct: 61 AEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKMLGGR---NENSGGAP 117
Query: 123 LENNFFNIMSA-------RKNYTSNTNNEKEKSKENFKTQPLPISNFLE-ADDDVPF 171
E + A + S+ + +++ + QP+P + +E DDD+PF
Sbjct: 118 YEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVPAAAPVEDIDDDIPF 174
>sp|P66846|SSB_BORPE Single-stranded DNA-binding protein OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=ssb PE=3 SV=1
Length = 166
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MASVNKVI++GNLGRDPE RY +G A+ NVSIATT W+DK SGE+RE TEWHR+ Y
Sbjct: 1 MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASGERREETEWHRVVMYN 60
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKE-GVEKYITEVIADNMQML 108
+LA+I +YLKKG +YIEGRL+TRKW +K+ G ++Y TE++AD MQML
Sbjct: 61 RLAEIAGEYLKKGRSVYIEGRLKTRKWQDKDTGADRYSTEIVADQMQML 109
>sp|P59928|SSB_BORPA Single-stranded DNA-binding protein OS=Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253) GN=ssb PE=3
SV=1
Length = 162
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MASVNKVI++GNLGRDPE RY +G A+ NVSIATT W+DK SGE+RE TEWHR+ Y
Sbjct: 1 MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASGERREETEWHRVVMYN 60
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKE-GVEKYITEVIADNMQML 108
+LA+I +YLKKG +YIEGRL+TRKW +K+ G ++Y TE++AD MQML
Sbjct: 61 RLAEIAGEYLKKGRSVYIEGRLKTRKWQDKDTGADRYSTEIVADQMQML 109
>sp|P66847|SSB_BORBR Single-stranded DNA-binding protein OS=Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50) GN=ssb PE=3
SV=1
Length = 166
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MASVNKVI++GNLGRDPE RY +G A+ NVSIATT W+DK SGE+RE TEWHR+ Y
Sbjct: 1 MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASGERREETEWHRVVMYN 60
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKE-GVEKYITEVIADNMQML 108
+LA+I +YLKKG +YIEGRL+TRKW +K+ G ++Y TE++AD MQML
Sbjct: 61 RLAEIAGEYLKKGRSVYIEGRLKTRKWQDKDTGADRYSTEIVADQMQML 109
>sp|P0AGE3|SSB_SHIFL Single-stranded DNA-binding protein OS=Shigella flexneri GN=ssb
PE=3 SV=2
Length = 178
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 7/178 (3%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM NG AV N+++AT+E+WRDK +GE +E TEWHR+
Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEV---IADNMQMLGSRKNTN 115
+ KLA++ +YL+KGSQ+YIEG+L+TRKWT++ G ++Y TEV + MQMLG R+
Sbjct: 61 FGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGG 120
Query: 116 EKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISN--FLEADDDVPF 171
N + ++ P SN ++ DDD+PF
Sbjct: 121 APAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF 178
>sp|P0AGE0|SSB_ECOLI Single-stranded DNA-binding protein OS=Escherichia coli (strain
K12) GN=ssb PE=1 SV=2
Length = 178
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 7/178 (3%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM NG AV N+++AT+E+WRDK +GE +E TEWHR+
Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEV---IADNMQMLGSRKNTN 115
+ KLA++ +YL+KGSQ+YIEG+L+TRKWT++ G ++Y TEV + MQMLG R+
Sbjct: 61 FGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGG 120
Query: 116 EKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISN--FLEADDDVPF 171
N + ++ P SN ++ DDD+PF
Sbjct: 121 APAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF 178
>sp|P0AGE1|SSB_ECOL6 Single-stranded DNA-binding protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ssb PE=3 SV=2
Length = 178
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 7/178 (3%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM NG AV N+++AT+E+WRDK +GE +E TEWHR+
Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEV---IADNMQMLGSRKNTN 115
+ KLA++ +YL+KGSQ+YIEG+L+TRKWT++ G ++Y TEV + MQMLG R+
Sbjct: 61 FGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGG 120
Query: 116 EKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISN--FLEADDDVPF 171
N + ++ P SN ++ DDD+PF
Sbjct: 121 APAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF 178
>sp|P0AGE2|SSB_ECO57 Single-stranded DNA-binding protein OS=Escherichia coli O157:H7
GN=ssb PE=3 SV=2
Length = 178
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 7/178 (3%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM NG AV N+++AT+E+WRDK +GE +E TEWHR+
Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEV---IADNMQMLGSRKNTN 115
+ KLA++ +YL+KGSQ+YIEG+L+TRKWT++ G ++Y TEV + MQMLG R+
Sbjct: 61 FGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGG 120
Query: 116 EKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISN--FLEADDDVPF 171
N + ++ P SN ++ DDD+PF
Sbjct: 121 APAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF 178
>sp|Q83EP4|SSB_COXBU Single-stranded DNA-binding protein OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=ssb PE=1 SV=1
Length = 158
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 110/169 (65%), Gaps = 14/169 (8%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
VNKVI+IGNLG+DPE RY NG+AV NV++AT+ WRDK +GE +E TEWHRI F+ +L
Sbjct: 4 GVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRL 63
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNEKNISNN 122
A+IV +YL+KGS+IYIEG L+TRKW +K GV++Y TE+IA+ M ML +R N N N+
Sbjct: 64 AEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNRGGGNSGNYGNH 123
Query: 123 LENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF 171
E N SA + + T + S+ + DDD+PF
Sbjct: 124 SEGGASNKQSAPTSSQTPTAGDD--------------SSVADFDDDIPF 158
>sp|Q9XJG4|SSB_BPP1 Single-stranded DNA-binding protein OS=Enterobacteria phage P1
GN=ssb PE=3 SV=1
Length = 162
Score = 156 bits (395), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 112/176 (63%), Gaps = 25/176 (14%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
VNKVI+IG LG+DPE RY+ NG AV +SIAT E+WRDK +G+++E TEWH++ + KL
Sbjct: 5 GVNKVILIGTLGQDPEIRYIPNGGAVGRLSIATNESWRDKQTGQQKEQTEWHKVVLFGKL 64
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVI---ADNMQMLGSRKN----TN 115
A+I +YL+KGSQ+YIEG+L+TRKWT+ GVE+Y TE+I MQM+G+R++ +N
Sbjct: 65 AEIASEYLRKGSQVYIEGKLKTRKWTDDAGVERYTTEIIVSQGGTMQMIGARRDDSQSSN 124
Query: 116 EKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF 171
SN +N+ S SN NNE P +F DDD+PF
Sbjct: 125 GWGQSNQPQNH--QQYSGGGKPQSNANNE-------------PPMDF---DDDIPF 162
>sp|P25762|SSB_SERMA Single-stranded DNA-binding protein OS=Serratia marcescens GN=ssb
PE=1 SV=2
Length = 176
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 92/118 (77%), Gaps = 5/118 (4%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM NG AV N+++AT+E+WRDK +GE++E TEWHR+
Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEV---IADNMQMLGSRKN 113
+ KLA++ +YL+KGSQ+YIEG LQTRKW ++ G ++Y TE+ + MQMLG R+
Sbjct: 61 FGKLAEVAGEYLRKGSQVYIEGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQG 118
>sp|P40947|SSB_PSEAE Single-stranded DNA-binding protein OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=ssb PE=1 SV=3
Length = 165
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 96/117 (82%), Gaps = 3/117 (2%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
VNKVI++GN+G DPETRYM NG+AVTN+++AT+E+W+DK +G+++E TEWHR+ F+ +L
Sbjct: 4 GVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRL 63
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD---NMQMLGSRKNTNE 116
A+I +YL+KGSQ+Y+EG L+TRKW ++G ++Y TE++ D NMQ+LG R + ++
Sbjct: 64 AEIAGEYLRKGSQVYVEGSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDD 120
>sp|Q8DCJ0|SSB_VIBVU Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain
CMCP6) GN=ssb PE=3 SV=1
Length = 179
Score = 153 bits (386), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 91/118 (77%), Gaps = 6/118 (5%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS +NKVI++GNLG DPE RYM +G AV N+++AT+E WRDK +GE RE TEWHR+T
Sbjct: 1 MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADN----MQMLGSRK 112
Y KLA++ +YL+KGSQ+YIEG+LQTRKW ++ G ++Y TEV+ MQMLG R+
Sbjct: 61 YGKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQ 118
>sp|Q87LA3|SSB_VIBPA Single-stranded DNA-binding protein OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=ssb PE=3 SV=1
Length = 176
Score = 152 bits (384), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 91/117 (77%), Gaps = 6/117 (5%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS +NKVI++GNLG DPE RYM NG AV N++IAT+E+WRDK +GE+RE TEWHR+
Sbjct: 1 MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADN----MQMLGSR 111
+ KLA++ +YL+KGSQ+Y+EG+LQTRKW ++ G ++Y TEV+ MQMLG R
Sbjct: 61 FGKLAEVAGEYLRKGSQVYVEGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGR 117
>sp|Q8EA81|SSB_SHEON Single-stranded DNA-binding protein OS=Shewanella oneidensis
(strain MR-1) GN=ssb PE=3 SV=1
Length = 238
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/131 (51%), Positives = 98/131 (74%), Gaps = 6/131 (4%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM NG+AV N+++AT+E+W+D+ G+++E TEWHR+
Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQ-GQQQERTEWHRVVL 59
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD---NMQMLGSRKNTN 115
+ KLA+I +YL+KGSQ+Y+EG+LQTRKW ++ G ++Y TEV+ D +MQMLGSR
Sbjct: 60 FGKLAEITGEYLRKGSQVYLEGKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRNQGG 119
Query: 116 EKNISNNLENN 126
+ + N
Sbjct: 120 QGAPMGGMPQN 130
>sp|P28046|SSB_PROMI Single-stranded DNA-binding protein OS=Proteus mirabilis GN=ssb
PE=1 SV=2
Length = 174
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 92/120 (76%), Gaps = 5/120 (4%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI+IGNLG+DPE RYM +G AV N+++AT+E+WRDK +GE +E TEWHR+
Sbjct: 1 MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVI 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEV---IADNMQMLGSRKNTN 115
+ KLA+I +YL+KGSQ+YIEG+LQTRKW ++ G ++Y TEV I MQMLG R +
Sbjct: 61 FGKLAEIAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQD 120
>sp|P28045|SSBR_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 104/177 (58%), Gaps = 14/177 (7%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
+NKVI++G LG DPE RY+ NG AV N+ +AT+E+WRDK +GE RE TEWHR+ + KL
Sbjct: 5 GINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKL 64
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIA---DNMQMLGSRKNTNEKNI 119
A++ +YL+KG+Q+YIEG+L+TR W + G+ +YITE++ MQMLGS N +
Sbjct: 65 AEVAGEYLRKGAQVYIEGQLRTRSW-DDNGITRYITEILVKTTGTMQMLGSAPQQNAQAQ 123
Query: 120 SNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEAD-----DDVPF 171
+N A K K K +E QP P E + DD+PF
Sbjct: 124 PKPQQNGQPQSADATKK-----GGAKTKGRERKAAQPEPQPQTPEGEDYGFSDDIPF 175
>sp|Q8ZJ06|SSB_YERPE Single-stranded DNA-binding protein OS=Yersinia pestis GN=ssb PE=3
SV=1
Length = 182
Score = 150 bits (378), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 89/113 (78%), Gaps = 5/113 (4%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM NG AV N+++AT+E+WRDK +GE++E TEWHR+
Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEV---IADNMQML 108
+ KLA++ +YL+KGSQ+YIEG LQTRKW ++ G E+Y TEV + MQML
Sbjct: 61 FGKLAEVAGEYLRKGSQVYIEGALQTRKWQDQSGQERYTTEVVVNVGGTMQML 113
>sp|P18022|SSBP_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=3
Length = 175
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 14/177 (7%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
+NKVI++G LG DPE RY+ NG AV N+ +AT+E+WRDK +GE RE TEWHR+ + KL
Sbjct: 5 GINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKL 64
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIA---DNMQMLGSRKNTNEKNI 119
A++ +YL+KG+Q+YIEG+L+TR W + G+ +YITE++ MQMLGS N +
Sbjct: 65 AEVAGEYLRKGAQVYIEGQLRTRSW-DDNGITRYITEILVKTTGTMQMLGSAPQQNAQAQ 123
Query: 120 SNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEAD-----DDVPF 171
+N A K + T K+ QP P E + DD+PF
Sbjct: 124 PKPQQNGQPQSADATKKGGAKTKGRGRKA-----AQPEPQPQTPEGEDYGFSDDIPF 175
>sp|Q9PHE7|SSB1_XYLFA Single-stranded DNA-binding protein 1 OS=Xylella fastidiosa (strain
9a5c) GN=ssb1 PE=3 SV=1
Length = 136
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 91/116 (78%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MAS+NK+ +IGNLG DP+ RYM +G VS+ATT+ W+DK++G K E TEWHR+ F+
Sbjct: 1 MASLNKMQLIGNLGADPDIRYMQDGTPTVTVSVATTDTWKDKDTGNKEEKTEWHRVVFFG 60
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNE 116
LA+IV ++LKKGSQIY+EG L++R WT+KEG ++Y TE++A MQMLG +++ N+
Sbjct: 61 GLAEIVGEFLKKGSQIYVEGALRSRNWTDKEGNKRYTTEIMAKEMQMLGKKQDNNK 116
>sp|P28044|SSB7_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 100/175 (57%), Gaps = 10/175 (5%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
+NKVI++G LG+DPE RY+ NG AV N+ +AT+E+WRDK +GE RE TEWHR+ + KL
Sbjct: 5 GINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEIREQTEWHRVVLFGKL 64
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIA---DNMQMLGSRKNTNEKNI 119
A++ +YL+KG+Q+YIEG+L+TR W + G+ +Y+TE++ MQMLG T
Sbjct: 65 AEVAGEYLRKGAQVYIEGQLRTRSWEDN-GITRYVTEILVKTTGTMQMLGRAAGT---QT 120
Query: 120 SNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEA---DDDVPF 171
F K K +E QP P A DDD+PF
Sbjct: 121 QPEEAQQFSGQPQPESQPEPKKGGAKTKGRERKAAQPEPRQPSEPAYDFDDDIPF 175
>sp|P0A2F6|SSB_SALTY Single-stranded DNA-binding protein OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ssb PE=3 SV=2
Length = 176
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 90/114 (78%), Gaps = 6/114 (5%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM +G AV N+++AT+E+WRDK +GE +E TEWHR+
Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVM 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEV----IADNMQML 108
+ KLA++ +YL+KGSQ+YIEG+L+TRKWT++ G E+Y TE+ I MQML
Sbjct: 61 FGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQERYTTEINVPQIGGVMQML 114
>sp|P0A2F7|SSB_SALTI Single-stranded DNA-binding protein OS=Salmonella typhi GN=ssb PE=3
SV=2
Length = 176
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 90/114 (78%), Gaps = 6/114 (5%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM +G AV N+++AT+E+WRDK +GE +E TEWHR+
Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVM 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEV----IADNMQML 108
+ KLA++ +YL+KGSQ+YIEG+L+TRKWT++ G E+Y TE+ I MQML
Sbjct: 61 FGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQERYTTEINVPQIGGVMQML 114
>sp|Q889U1|SSB_PSESM Single-stranded DNA-binding protein OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=ssb PE=1 SV=1
Length = 189
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 89/112 (79%), Gaps = 4/112 (3%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
VNKVI++G G+DPE RY+ NG+AVTN+S+AT+E W DK SG+K E TEWHR++ + K+
Sbjct: 4 GVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKV 63
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD---NMQMLGSR 111
A+I +YL+KGSQ+YIEG+LQTR+W K+G+++Y TE++ D MQ+LG R
Sbjct: 64 AEIAGEYLRKGSQVYIEGKLQTREW-EKDGIKRYTTEIVVDMQGTMQLLGGR 114
>sp|Q93GP7|SSB2_SALTY Single-stranded DNA-binding protein 2 OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ssb2 PE=3 SV=1
Length = 172
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 85/110 (77%), Gaps = 3/110 (2%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
VNKVI++G++G+DPE RYM NG AV N+++AT+E WR + GE RE TEWHR+ + KL
Sbjct: 5 GVNKVILVGHIGQDPEVRYMPNGGAVANLTLATSETWRVRQDGEMREHTEWHRVVVFGKL 64
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVI---ADNMQMLG 109
A+I +YL+KG+Q+YIEG+L+TRKWT++ G +KY TEVI MQMLG
Sbjct: 65 AEIASEYLRKGAQVYIEGQLRTRKWTDQSGQDKYTTEVIVNVGGTMQMLG 114
>sp|Q8VMM4|SSBW_PSEPU Single-stranded DNA-binding protein OS=Pseudomonas putida GN=ssb
PE=3 SV=1
Length = 180
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 90/119 (75%), Gaps = 4/119 (3%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
VNKVI++G G+DPE RY+ NG+AVTN+S+AT+E W DK +G+K E TEWHR++ + K+
Sbjct: 4 GVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSLFGKV 63
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD---NMQMLGSRKNTNEKN 118
A+I +YL+KGSQ YIEG+LQTR+W K+G+++Y TE+I D MQ+LG R ++
Sbjct: 64 AEIAGEYLRKGSQCYIEGKLQTREW-EKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQQG 121
>sp|P28043|SSB2_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 179
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 102/180 (56%), Gaps = 16/180 (8%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
+NKVI++G LG+DPE RY+ NG AV N+ +AT+E WRDK +G+ RE TEWHR+ + KL
Sbjct: 5 GINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGKMREQTEWHRVVLFGKL 64
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIA---DNMQMLGSRKNTNEKNI 119
A++ +YL+KG+Q+YIEG+L+TR W + G+ +Y+TE++ MQMLG
Sbjct: 65 AEVAGEYLRKGAQVYIEGQLRTRSWEDN-GITRYVTEILVKTTGTMQMLGRAAGAQ---- 119
Query: 120 SNNLENNFFNIMS---ARKNYTSNTNNEKEKSKENFKTQPLPISNFLEAD-----DDVPF 171
+ E F+ + + K K + QP P E D DD+PF
Sbjct: 120 TQPEEGQQFSAQPQPEPQSEAGTKKGGAKTKGRGRKVAQPEPQLQPPEGDDYGFSDDIPF 179
>sp|P77953|SSB_SHEHA Single-stranded DNA-binding protein OS=Shewanella hanedai GN=ssb
PE=3 SV=1
Length = 226
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 89/114 (78%), Gaps = 4/114 (3%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM NG+AV N ++AT+E+W+D+ G+ +E TEWH I
Sbjct: 1 MASRGVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQ-GQPQERTEWHNIVM 59
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKE-GVEKYITEVIADNMQMLGSR 111
YR+LA+I +YLKKGS+IYIEG+LQT KW ++ G ++Y TE+ A MQML SR
Sbjct: 60 YRRLAEIAGEYLKKGSKIYIEGKLQTSKWQDQATGQDRYKTEINASEMQMLDSR 113
>sp|Q89L50|SSB_BRAJA Single-stranded DNA-binding protein OS=Bradyrhizobium japonicum
(strain USDA 110) GN=ssb PE=3 SV=1
Length = 164
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 81/101 (80%), Gaps = 1/101 (0%)
Query: 2 ASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFY-R 60
SVNKVI++GNLG+DPE R +G + N+SIAT+E WRDKNSGE++E TEWHR+ +
Sbjct: 3 GSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERKEKTEWHRVVIFNE 62
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVI 101
L ++ +QYLKKG+++YIEG LQTRKWT++ GVEKY TEV+
Sbjct: 63 GLCKVAEQYLKKGAKVYIEGALQTRKWTDQSGVEKYSTEVV 103
>sp|Q88QK5|SSB_PSEPK Single-stranded DNA-binding protein OS=Pseudomonas putida (strain
KT2440) GN=ssb PE=3 SV=1
Length = 181
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 86/109 (78%), Gaps = 4/109 (3%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
VNKVI++G G+DPE RY+ NG+AVTN+S+AT+E W DK SG+K E TEWHR++ + K+
Sbjct: 4 GVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKV 63
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD---NMQML 108
A+I +YL+KGSQ YIEG+LQTR+W K+G+++Y TE+I D MQ+L
Sbjct: 64 AEIAGEYLRKGSQCYIEGKLQTREW-EKDGIKRYTTEIIVDINGTMQLL 111
>sp|Q847G1|SSBD_PSEPU Single-stranded DNA-binding protein OS=Pseudomonas putida GN=ssb
PE=3 SV=1
Length = 161
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 88/112 (78%), Gaps = 4/112 (3%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
VNKVI+IG G+DPE RY+ NG+AVTN+S+AT+E W DK +G+K E TE HR++ + K+
Sbjct: 4 GVNKVILIGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTERHRVSLFGKV 63
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD---NMQMLGSR 111
A+I +YL+KGSQ+YIEG+LQTR+W K+G+++Y TE++ D MQ+LG R
Sbjct: 64 AEIAGEYLRKGSQVYIEGKLQTREW-EKDGIKRYTTEIVVDMQGTMQLLGGR 114
>sp|Q9A894|SSB_CAUCR Single-stranded DNA-binding protein OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=ssb PE=3 SV=1
Length = 167
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 83/115 (72%), Gaps = 5/115 (4%)
Query: 2 ASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK 61
SVNKVI++GNLG DPE R + +GD V N+ IAT+E WRD++SGE++E TEWHR+ +
Sbjct: 3 GSVNKVILVGNLGADPEIRSLGSGDRVANLRIATSETWRDRSSGERKEKTEWHRVVIFND 62
Query: 62 -LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD----NMQMLGSR 111
L ++ +QYL+KGS +YIEG LQTRKWT+ G EKY TE++ + MLG R
Sbjct: 63 NLVKVAEQYLRKGSTVYIEGALQTRKWTDNTGQEKYSTEIVLQKFRGELTMLGGR 117
>sp|P18310|SSBF_ECOLI Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli (strain K12) GN=ssbF PE=1 SV=3
Length = 179
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
+NKVI++G LG+DPE RY+ NG AV N+ +AT+E+WRDK +GE RE TEWHR+ + KL
Sbjct: 5 GINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKL 64
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIA---DNMQML----GSRKNTN 115
A++ + L+KG+Q+YIEG+L+TR W + G+ +Y+TE++ MQML G++
Sbjct: 65 AEVAGECLRKGAQVYIEGQLRTRSWEDN-GITRYVTEILVKTTGTMQMLVRAAGAQTQPE 123
Query: 116 EKNISNNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF 171
E + + K + T K+ + P + DD+PF
Sbjct: 124 EGQQFSGQPQPEPQAEAGTKKGGAKTKGRGRKAAQPEPQPQPPEGDDYGFSDDIPF 179
>sp|Q98M41|SSB_RHILO Single-stranded DNA-binding protein OS=Rhizobium loti (strain
MAFF303099) GN=ssb PE=3 SV=1
Length = 172
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 88/117 (75%), Gaps = 5/117 (4%)
Query: 2 ASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK 61
SVNKVI++GNLG DPE R +++G+ V N+ IAT+E+WRDKNSGE++E TEWH + + +
Sbjct: 3 GSVNKVILVGNLGADPEIRRLNSGEPVVNIRIATSESWRDKNSGERKEKTEWHNVVIFNE 62
Query: 62 -LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD----NMQMLGSRKN 113
+A++ +QYLKKG ++Y+EG+LQTRKW ++ G +KY TEV+ +QML R+
Sbjct: 63 GIAKVAEQYLKKGMKVYVEGQLQTRKWQDQTGADKYTTEVVLQRFRGELQMLDGRQG 119
>sp|Q8KB47|SSB1_CHLTE Single-stranded DNA-binding protein 1 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=ssb1 PE=3 SV=1
Length = 162
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 103/169 (60%), Gaps = 12/169 (7%)
Query: 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLA 63
+NKV++IG+LG DPE R ++G +V N ++AT+E ++D +SG +E TEWHRI + KLA
Sbjct: 5 LNKVMLIGHLGNDPERRETASGQSVVNFTLATSEGFKD-SSGNLQERTEWHRIVAWGKLA 63
Query: 64 QIVKQYLKKGSQIYIEGRLQTRKW-TNKEGVEKYITEVIADNMQMLGSRKNTNEKNISNN 122
I QYLKKG Q+YIEGRLQTR W NK G +KY TE++ +MQMLG++ + + ++
Sbjct: 64 DICSQYLKKGRQVYIEGRLQTRSWDDNKTGDKKYATEIVCTDMQMLGAKDSGGGTSDASY 123
Query: 123 LENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF 171
+N R +Y+ + E S N+ P DD+PF
Sbjct: 124 SQN--------RPSYSRPS--RPEPSSGNYGASPSSGGAQEFEKDDLPF 162
>sp|Q8YHC2|SSB_BRUME Single-stranded DNA-binding protein OS=Brucella melitensis biotype
1 (strain 16M / ATCC 23456 / NCTC 10094) GN=ssb PE=3
SV=1
Length = 168
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 89/120 (74%), Gaps = 5/120 (4%)
Query: 2 ASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK 61
SVNKVI++GNLG DPE R +++GD V N+ IAT+E+WRD+ +GE+++ TEWH + + +
Sbjct: 3 GSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNE 62
Query: 62 -LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD----NMQMLGSRKNTNE 116
LA++ +QYLKKG+++YIEG LQTRKW ++ G ++Y TE++ +QML SR +E
Sbjct: 63 NLAKVAEQYLKKGAKVYIEGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGSE 122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,405,231
Number of Sequences: 539616
Number of extensions: 2579272
Number of successful extensions: 35069
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 11979
Number of HSP's gapped (non-prelim): 15235
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)