Query psy14498
Match_columns 171
No_of_seqs 208 out of 1267
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:19:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1eqq_A Single stranded DNA bin 100.0 6E-44 2E-48 268.5 9.9 114 1-114 1-119 (178)
2 3pgz_A Single-stranded DNA-bin 100.0 4.2E-42 1.4E-46 259.8 16.5 117 1-117 22-144 (193)
3 3tqy_A Single-stranded DNA-bin 100.0 6.1E-41 2.1E-45 247.9 18.0 116 1-116 4-120 (158)
4 3lgj_A Single-stranded DNA-bin 100.0 4.2E-41 1.4E-45 250.9 14.3 114 2-115 21-139 (169)
5 3afp_A Single-stranded DNA-bin 100.0 4.7E-39 1.6E-43 240.0 12.4 115 1-115 1-120 (168)
6 1qvc_A Single stranded DNA bin 100.0 8.9E-38 3.1E-42 228.1 17.3 117 1-117 2-121 (145)
7 1z9f_A Single-strand binding p 100.0 2.8E-38 9.7E-43 232.3 13.7 112 1-114 13-125 (153)
8 3ulp_A Single-strand binding p 100.0 4.3E-37 1.5E-41 219.2 16.6 113 1-113 1-122 (124)
9 2vw9_A Single-stranded DNA bin 100.0 2.1E-36 7.3E-41 218.1 17.1 112 3-115 1-112 (134)
10 3vdy_A SSB, single-stranded DN 100.0 4.2E-36 1.5E-40 211.7 15.7 110 2-114 3-112 (116)
11 3ull_A DNA binding protein; DN 100.0 2.6E-36 8.8E-41 217.3 12.9 113 1-113 10-129 (132)
12 1se8_A Single-strand binding p 100.0 2.8E-36 9.7E-41 243.5 14.5 112 3-116 128-239 (301)
13 4dam_A Single-stranded DNA-bin 100.0 9E-35 3.1E-39 207.7 16.9 107 3-111 14-121 (128)
14 3koj_A Uncharacterized protein 100.0 7.7E-35 2.6E-39 201.9 12.9 98 2-106 9-107 (108)
15 3eiv_A Single-stranded DNA-bin 100.0 2.8E-34 9.6E-39 218.1 14.3 107 1-107 1-108 (199)
16 2fxq_A Single-strand binding p 100.0 5.3E-34 1.8E-38 226.9 15.2 108 2-114 126-233 (264)
17 3k7u_C MP18 RNA editing comple 100.0 2.9E-34 9.8E-39 209.3 12.2 111 1-114 3-120 (148)
18 1v1q_A Primosomal replication 100.0 3.4E-34 1.2E-38 205.4 11.9 108 1-114 16-123 (134)
19 3k81_C MP18 RNA editing comple 100.0 1.7E-33 5.8E-38 207.1 10.4 110 3-114 21-136 (164)
20 1se8_A Single-strand binding p 100.0 1.1E-32 3.8E-37 222.5 15.7 112 1-113 1-114 (301)
21 2fxq_A Single-strand binding p 100.0 5.4E-32 1.8E-36 215.3 13.4 110 1-112 1-111 (264)
22 1txy_A Primosomal replication 100.0 5E-31 1.7E-35 182.3 10.6 103 3-111 1-103 (104)
23 4dni_A Fusion protein of RNA-e 100.0 2.7E-30 9.1E-35 203.3 15.7 106 1-109 143-255 (257)
24 3k8a_A Putative primosomal rep 100.0 2.9E-30 1E-34 177.7 12.6 99 1-109 4-102 (103)
25 4gs3_A Single-stranded DNA-bin 100.0 2.4E-30 8.1E-35 178.4 9.9 94 5-109 12-106 (107)
26 3fhw_A Primosomal replication 100.0 1E-29 3.5E-34 177.8 12.5 100 4-112 1-100 (115)
27 3en2_A Probable primosomal rep 99.9 2E-26 7E-31 157.4 9.7 84 4-90 2-85 (101)
28 3stb_C RNA-editing complex pro 99.9 1.5E-23 5.2E-28 151.0 13.7 93 3-101 43-136 (148)
29 4dni_A Fusion protein of RNA-e 99.9 1.3E-23 4.4E-28 165.3 10.7 99 3-109 29-128 (257)
30 4dka_C RNA-editing complex pro 98.2 2.1E-05 7.3E-10 52.6 9.8 79 6-95 5-85 (105)
31 3dm3_A Replication factor A; p 97.2 0.0019 6.5E-08 43.7 8.0 82 5-109 15-98 (105)
32 3e0e_A Replication protein A; 97.0 0.0067 2.3E-07 40.3 9.0 79 5-109 12-94 (97)
33 2k50_A Replication factor A re 96.7 0.0074 2.5E-07 41.0 7.2 68 6-88 18-89 (115)
34 2hql_A Hypothetical protein Mg 96.6 0.064 2.2E-06 34.8 12.4 90 3-105 7-96 (110)
35 1ynx_A Replication factor-A pr 96.6 0.012 4E-07 40.2 8.1 68 3-84 13-84 (114)
36 3f2b_A DNA-directed DNA polyme 95.7 0.16 5.3E-06 47.0 12.7 85 4-110 17-103 (1041)
37 2k75_A Uncharacterized protein 95.1 0.15 5.2E-06 34.1 8.1 60 3-83 12-74 (106)
38 1o7i_A SSB, SSO2364, single st 94.8 0.1 3.6E-06 35.6 6.9 63 4-84 12-78 (119)
39 3au7_A TIAS, putative uncharac 94.3 0.52 1.8E-05 39.0 10.9 78 3-111 283-362 (402)
40 1jmc_A Protein (replication pr 94.2 0.19 6.6E-06 38.3 7.8 66 3-80 17-83 (246)
41 2wkd_A ORF34P2; SSB, single-st 92.7 0.23 7.7E-06 33.2 5.0 25 68-96 52-76 (119)
42 2vl6_A SSO MCM N-TER, minichro 92.7 0.75 2.6E-05 35.6 9.0 55 51-109 210-266 (268)
43 4gop_C Putative uncharacterize 91.6 0.49 1.7E-05 39.4 7.1 67 3-83 12-82 (444)
44 2hpi_A DNA polymerase III alph 91.4 0.38 1.3E-05 45.1 6.8 79 6-109 1044-1122(1220)
45 1eov_A ASPRS, aspartyl-tRNA sy 88.6 7.5 0.00026 32.8 12.0 59 52-111 65-130 (487)
46 4gop_B Putative uncharacterize 88.5 1.1 3.6E-05 31.1 5.8 78 4-110 36-116 (136)
47 3kdf_D Replication protein A 3 88.5 1.5 5.1E-05 30.2 6.4 79 4-110 31-111 (132)
48 3kf8_A Protein STN1; OB fold; 87.5 4.5 0.00015 30.6 8.9 96 4-111 85-185 (220)
49 1jmc_A Protein (replication pr 86.2 2.6 8.9E-05 31.8 7.2 68 6-87 140-210 (246)
50 3bju_A Lysyl-tRNA synthetase; 85.9 8.8 0.0003 32.7 11.0 79 6-111 57-141 (521)
51 1ltl_A DNA replication initiat 85.5 2.3 8E-05 33.1 6.8 53 51-110 197-249 (279)
52 2pi2_A Replication protein A 3 83.9 5.1 0.00017 31.0 8.0 78 4-109 71-150 (270)
53 3kf6_A Protein STN1; OB fold, 83.6 10 0.00034 27.1 11.8 80 4-111 47-129 (159)
54 3ebe_A Protein MCM10 homolog; 81.3 1.1 3.8E-05 33.5 3.1 63 6-80 57-119 (200)
55 2xgt_A Asparaginyl-tRNA synthe 80.7 7.8 0.00027 32.2 8.4 82 5-110 12-96 (435)
56 4hik_A Protection of telomeres 78.6 1.8 6E-05 30.6 3.3 73 4-84 14-98 (143)
57 1e1o_A Lysyl-tRNA synthetase, 78.5 23 0.0008 29.9 10.8 78 6-111 66-148 (504)
58 4ex5_A Lysine--tRNA ligase; st 76.9 26 0.00088 29.9 10.6 78 6-111 88-169 (529)
59 1n9w_A Aspartyl-tRNA synthetas 76.5 28 0.00096 28.7 10.5 74 5-111 14-88 (422)
60 3m4p_A Ehasnrs, asparaginyl-tR 76.4 19 0.00066 30.0 9.6 59 53-111 60-122 (456)
61 2kbn_A Conserved protein; nucl 75.5 15 0.0005 24.2 7.6 61 4-84 15-76 (109)
62 1wyd_A Hypothetical aspartyl-t 74.8 26 0.00089 28.9 9.9 80 5-111 17-98 (429)
63 4gop_C Putative uncharacterize 74.1 4.7 0.00016 33.4 5.3 69 7-87 136-209 (444)
64 1x54_A Asparaginyl-tRNA synthe 73.9 37 0.0013 28.1 11.9 80 5-110 17-100 (434)
65 1wjj_A Hypothetical protein F2 73.7 6.7 0.00023 27.6 5.2 27 51-81 72-98 (145)
66 1nnx_A Protein YGIW; structura 71.4 20 0.00068 23.9 8.7 33 68-109 76-108 (109)
67 3a74_A Lysyl-tRNA synthetase; 71.3 22 0.00076 30.0 8.8 78 6-111 58-139 (493)
68 3i7f_A Aspartyl-tRNA synthetas 69.2 11 0.00037 32.4 6.5 60 51-111 89-153 (548)
69 3nem_A Aspartyl-tRNA synthetas 65.6 25 0.00087 29.1 7.9 81 5-111 17-101 (438)
70 1l0w_A Aspartyl-tRNA synthetas 64.3 7.7 0.00026 33.5 4.6 57 53-111 45-103 (580)
71 1c0a_A Aspartyl tRNA synthetas 62.0 16 0.00055 31.5 6.2 55 53-111 44-105 (585)
72 4hsp_A Hypothetical protein; P 58.9 18 0.0006 25.6 5.0 34 74-109 113-146 (150)
73 4ah6_A Aspartate--tRNA ligase, 55.2 17 0.00058 31.7 5.2 59 53-111 50-113 (617)
74 1nh2_D Transcription initiatio 52.5 52 0.0018 22.3 6.4 41 62-110 47-87 (121)
75 1nvp_D Transcription initiatio 52.1 49 0.0017 22.0 6.6 40 62-109 43-82 (108)
76 2ko4_B General control protein 47.2 6.4 0.00022 20.4 0.8 6 165-170 24-29 (34)
77 3f9v_A Minichromosome maintena 45.5 30 0.001 29.7 5.2 58 50-111 203-262 (595)
78 2isb_A Fumarase, FUM-1; NP_069 43.8 23 0.00078 26.1 3.6 26 61-86 22-47 (192)
79 2k50_A Replication factor A re 42.4 55 0.0019 21.2 5.2 25 69-93 12-40 (115)
80 1j3a_A 50S ribosomal protein L 40.9 12 0.0004 26.3 1.6 22 59-80 11-32 (142)
81 1vq8_J 50S ribosomal protein L 40.2 12 0.00042 26.3 1.6 21 59-79 19-39 (145)
82 3iot_A Maltose-binding protein 38.8 6.8 0.00023 31.9 0.1 6 62-67 275-280 (449)
83 1gm5_A RECG; helicase, replica 34.1 22 0.00076 31.7 2.7 61 6-84 167-229 (780)
84 3mvn_A UDP-N-acetylmuramate:L- 33.3 29 0.001 24.2 2.8 22 60-81 126-147 (163)
85 1xjv_A Protection of telomeres 33.0 81 0.0028 24.3 5.6 34 52-86 211-245 (294)
86 2ftc_H L13MT, MRP-L13, 39S rib 31.8 29 0.001 24.4 2.5 29 52-80 17-61 (148)
87 2cqa_A RUVB-like 2; TIP48, TIP 30.6 1.1E+02 0.0038 19.8 5.5 57 8-79 13-72 (95)
88 2hbp_A Cytoskeleton assembly c 29.8 44 0.0015 20.3 2.7 21 80-100 1-21 (68)
89 1xjv_A Protection of telomeres 29.4 53 0.0018 25.4 3.9 70 5-88 16-85 (294)
90 2gjh_A Designed protein; oblig 27.9 28 0.00096 19.8 1.5 18 71-88 39-56 (62)
91 3b21_A ORF169B, OSPI; bacteria 27.4 56 0.0019 23.0 3.3 36 60-96 128-165 (220)
92 3r8s_J 50S ribosomal protein L 27.2 32 0.0011 24.0 2.0 29 51-79 13-57 (142)
93 4a17_I RPL13A, 60S ribosomal p 27.0 26 0.00091 25.9 1.6 21 59-79 15-35 (198)
94 3v2d_N 50S ribosomal protein L 26.6 34 0.0012 23.9 2.1 29 51-79 11-55 (140)
95 1i96_V Translation initiation 26.1 51 0.0017 21.0 2.7 28 61-88 18-45 (89)
96 4b6a_O 60S ribosomal protein L 25.9 33 0.0011 25.4 2.0 21 59-79 16-36 (199)
97 3jyw_M 60S ribosomal protein L 25.6 24 0.00082 25.7 1.2 21 59-79 10-30 (178)
98 3c0c_A Endophilin-A2; endocyto 25.0 51 0.0017 19.4 2.5 19 70-88 32-50 (73)
99 2zjr_G 50S ribosomal protein L 24.4 38 0.0013 24.5 2.0 30 51-80 39-84 (174)
100 3iz5_K 60S ribosomal protein L 24.0 32 0.0011 25.6 1.6 21 59-79 21-41 (206)
101 2wnv_C C1Q chain C, complement 23.8 34 0.0012 23.1 1.6 13 70-82 97-109 (131)
102 1qzg_A Protection of telomeres 23.3 1.4E+02 0.0047 21.8 4.9 74 5-88 43-118 (187)
103 2wnv_B C1Q chain B, complement 23.2 35 0.0012 23.2 1.6 13 70-82 99-111 (136)
104 2wnv_A C1Q chain A, complement 23.0 36 0.0012 23.0 1.6 13 70-82 98-110 (134)
105 4a1k_A Putative L, D-transpept 22.9 72 0.0025 22.4 3.3 20 60-79 145-164 (165)
106 1xee_A Chemotaxis-inhibiting p 22.7 27 0.00092 21.4 0.8 17 59-75 8-24 (91)
107 3tur_A Mycobacteria tuberculos 22.3 76 0.0026 24.7 3.6 28 54-81 231-259 (287)
108 1tig_A IF3-C, translation init 21.5 56 0.0019 21.0 2.2 26 62-87 24-49 (94)
109 4eh1_A Flavohemoprotein; struc 20.2 94 0.0032 22.5 3.6 27 60-86 83-109 (243)
110 3f1f_N 50S ribosomal protein L 20.1 50 0.0017 23.6 1.9 21 59-79 46-78 (163)
No 1
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=100.00 E-value=6e-44 Score=268.49 Aligned_cols=114 Identities=59% Similarity=1.095 Sum_probs=105.8
Q ss_pred CC--CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEE
Q psy14498 1 MA--SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYI 78 (171)
Q Consensus 1 M~--~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V 78 (171)
|+ |||+|+|+|||++||++|++++|+++|+|+||++++|+++++|+|+++++||+|++||++|+.+.++|+||++|+|
T Consensus 1 Ma~~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~V 80 (178)
T 1eqq_A 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI 80 (178)
T ss_dssp -CCCCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEE
T ss_pred CCccCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEE
Confidence 77 8999999999999999999999999999999999999987779998899999999999999999999999999999
Q ss_pred EeEeeeeeeecCCCcEEEEEEE---EEeEEEEccCCCCC
Q psy14498 79 EGRLQTRKWTNKEGVEKYITEV---IADNMQMLGSRKNT 114 (171)
Q Consensus 79 ~G~l~~~~~~~kdG~~~~~~~i---~a~~i~~l~~~~~~ 114 (171)
+|+|++++|+|+||++++.++| ++++|+||.++...
T Consensus 81 eGrL~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~~~~~ 119 (178)
T 1eqq_A 81 EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 119 (178)
T ss_dssp CCEEEEEEEECSSSEEEEEEEEECSSSCCEECSCC----
T ss_pred EEEEEeeeEECCCCCEEEEEEEeeeecCeEEEccccCCC
Confidence 9999999999999999999999 99999999987663
No 2
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=100.00 E-value=4.2e-42 Score=259.78 Aligned_cols=117 Identities=54% Similarity=0.992 Sum_probs=100.0
Q ss_pred CC-CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhH-HHHHHHHHcCCCCEEEE
Q psy14498 1 MA-SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK-LAQIVKQYLKKGSQIYI 78 (171)
Q Consensus 1 M~-~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~-~A~~~~~~l~kG~~V~V 78 (171)
|+ .||+|+|+|||++||++|++++|++||+|+||++++|+++++|+|++.++||+|++|++ +|+.+.++|+||++|+|
T Consensus 22 Ma~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~V 101 (193)
T 3pgz_A 22 MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYI 101 (193)
T ss_dssp -CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEE
T ss_pred HhhhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEE
Confidence 67 69999999999999999999999999999999999999876699988999999999996 99999999999999999
Q ss_pred EeEeeeeeeecCCCcEEEEEEEEEe----EEEEccCCCCCCCC
Q psy14498 79 EGRLQTRKWTNKEGVEKYITEVIAD----NMQMLGSRKNTNEK 117 (171)
Q Consensus 79 ~G~l~~~~~~~kdG~~~~~~~i~a~----~i~~l~~~~~~~~~ 117 (171)
+|+|++++|+|+||+++|.++|+|+ +|+||+++...++.
T Consensus 102 eGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk~~~~~~ 144 (193)
T 3pgz_A 102 EGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRAAAGGE 144 (193)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--------
T ss_pred EEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCCCCCCCC
Confidence 9999999999999999999999999 69999998766553
No 3
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=100.00 E-value=6.1e-41 Score=247.88 Aligned_cols=116 Identities=61% Similarity=1.090 Sum_probs=105.7
Q ss_pred CC-CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEE
Q psy14498 1 MA-SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 1 M~-~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~ 79 (171)
|+ +||+|+|+|||++||++|++++|+++|+|+||++++|+++++|++++.++||+|++||++|+.+.++|+||+.|+|+
T Consensus 4 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 4 MARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred hhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 77 79999999999999999999999999999999999999875599988999999999999999999999999999999
Q ss_pred eEeeeeeeecCCCcEEEEEEEEEeEEEEccCCCCCCC
Q psy14498 80 GRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNE 116 (171)
Q Consensus 80 G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~~~~~ 116 (171)
|+|++++|++++|++++.++|+|++|+||.++..++.
T Consensus 84 G~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k~~~~~ 120 (158)
T 3tqy_A 84 GSLRTRKWQDKNGVDRYTTEIIANEMHMLDNRGGGNS 120 (158)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEECC-------
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEccCCcccCC
Confidence 9999999999999999999999999999998876544
No 4
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=100.00 E-value=4.2e-41 Score=250.95 Aligned_cols=114 Identities=44% Similarity=0.835 Sum_probs=86.7
Q ss_pred CCccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhH-HHHHHHHHcCCCCEEEEEe
Q psy14498 2 ASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK-LAQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 2 ~~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~-~A~~~~~~l~kG~~V~V~G 80 (171)
.|||+|+|+|||++||++|++++|+++|+|+||++++|+++++|+|++.++||+|++||+ +|+.+.++|+||++|+|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEE
Confidence 389999999999999999999999999999999999999876699888999999999999 9999999999999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEE----eEEEEccCCCCCC
Q psy14498 81 RLQTRKWTNKEGVEKYITEVIA----DNMQMLGSRKNTN 115 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i~a----~~i~~l~~~~~~~ 115 (171)
+|++++|+|+||++++.++|+| ++|+||++++..+
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k~~~~ 139 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQS 139 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC-----
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCCCccc
Confidence 9999999999999999999998 5899999886543
No 5
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=100.00 E-value=4.7e-39 Score=239.96 Aligned_cols=115 Identities=32% Similarity=0.566 Sum_probs=97.0
Q ss_pred CCCccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeee-eceEEEEEEEhHHHHHHHHHcCCCCEEEEE
Q psy14498 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRE-LTEWHRITFYRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 1 M~~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~-~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~ 79 (171)
|++||+|+|+|||++||++|++++|++||+|+||++++++++++|+|++ +++||+|++|+++|+.++++|+||++|+|+
T Consensus 1 Ma~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 80 (168)
T 3afp_A 1 MAGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVT 80 (168)
T ss_dssp --CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred CCccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEE
Confidence 8999999999999999999999999999999999999888776788876 699999999999999999999999999999
Q ss_pred eEeeeeeeecCCCcEEEEEEEEEe----EEEEccCCCCCC
Q psy14498 80 GRLQTRKWTNKEGVEKYITEVIAD----NMQMLGSRKNTN 115 (171)
Q Consensus 80 G~l~~~~~~~kdG~~~~~~~i~a~----~i~~l~~~~~~~ 115 (171)
|+|++++|+|+||++++.++|+|+ +|.||.++....
T Consensus 81 GrL~~~~~~dkdG~~r~~~ev~a~~v~~~l~~l~~~~~~~ 120 (168)
T 3afp_A 81 GRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVNKA 120 (168)
T ss_dssp EEEEEEEEC-CCSCCEEEEEEEEEEEEECCSSEEEEEECC
T ss_pred EEEEeeeEECCCCcEEEEEEEEEEEeecCEEEeccccccc
Confidence 999999999999999999999887 677887664443
No 6
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=100.00 E-value=8.9e-38 Score=228.11 Aligned_cols=117 Identities=56% Similarity=1.042 Sum_probs=109.8
Q ss_pred CCCccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEe
Q psy14498 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 1 M~~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G 80 (171)
|.|||+|+|+|||++||++|++++|.++++|+||++++++++++|+|++.++||+|++|+++|+.++++|+||++|+|+|
T Consensus 2 ~~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred CCceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEE
Confidence 34899999999999999999999999999999999999998766998888999999999999999999999999999999
Q ss_pred EeeeeeeecCCCcEEEEEEE---EEeEEEEccCCCCCCCC
Q psy14498 81 RLQTRKWTNKEGVEKYITEV---IADNMQMLGSRKNTNEK 117 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i---~a~~i~~l~~~~~~~~~ 117 (171)
+|++++|+|+||++++.++| ++++|+||.++......
T Consensus 82 ~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~~~~~~~ 121 (145)
T 1qvc_A 82 QLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAP 121 (145)
T ss_dssp EEEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCCSSS
T ss_pred EEEeeEEECCCCcEEEEEEEeeeEeCEEEEccCCCcCccc
Confidence 99999999999999999999 99999999988665443
No 7
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-38 Score=232.26 Aligned_cols=112 Identities=31% Similarity=0.631 Sum_probs=86.4
Q ss_pred CCCccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEec-ccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEE
Q psy14498 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTE-NWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 1 M~~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~-~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~ 79 (171)
|++||+|+|+|||++||++|++++|+++|+|+||+++ +|++++ |++.+ ++||+|++||++|+.+.++|+||++|+|+
T Consensus 13 ~~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~-Ge~~~-t~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 90 (153)
T 1z9f_A 13 MSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAP-DDAQT-TDFFRIVTFGRLAEFARTYLTKGRLVLVE 90 (153)
T ss_dssp CSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC------------C-EEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred ccceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCC-CCEee-eEEEEEEEECHHHHHHHhhCCCCCEEEEE
Confidence 8899999999999999999999999999999999999 888874 88743 99999999999999999999999999999
Q ss_pred eEeeeeeeecCCCcEEEEEEEEEeEEEEccCCCCC
Q psy14498 80 GRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNT 114 (171)
Q Consensus 80 G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~~~ 114 (171)
|+|++++|++++|++++.++|+|++|.||.++...
T Consensus 91 GrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~~~~ 125 (153)
T 1z9f_A 91 GEMRMRRWETPTGEKRVSPEVVANVVRFMDRKPAE 125 (153)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEEECC-----
T ss_pred EEEEeceEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 99999999999999999999999999999877543
No 8
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=100.00 E-value=4.3e-37 Score=219.15 Aligned_cols=113 Identities=39% Similarity=0.850 Sum_probs=103.6
Q ss_pred CC--CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEh-HHHHHHHHHcCCCCEEE
Q psy14498 1 MA--SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR-KLAQIVKQYLKKGSQIY 77 (171)
Q Consensus 1 M~--~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g-~~A~~~~~~l~kG~~V~ 77 (171)
|+ |||+|+|+|||++||++|++++|+++++|+||++++|+++++|+|.+.++||+|++|| ++|+.++++|+||+.|+
T Consensus 1 m~~~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~ 80 (124)
T 3ulp_A 1 MNEKSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVY 80 (124)
T ss_dssp CCSCCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEE
T ss_pred CCcccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEE
Confidence 66 8999999999999999999999999999999999999987679998899999999999 89999999999999999
Q ss_pred EEeEeeeeeeecC--CCcEEEEEEEEEe----EEEEccCCCC
Q psy14498 78 IEGRLQTRKWTNK--EGVEKYITEVIAD----NMQMLGSRKN 113 (171)
Q Consensus 78 V~G~l~~~~~~~k--dG~~~~~~~i~a~----~i~~l~~~~~ 113 (171)
|+|+|++++|+|+ ||++++.++|+|+ +|+||++++.
T Consensus 81 V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~ 122 (124)
T 3ulp_A 81 VQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRN 122 (124)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC----
T ss_pred EEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCC
Confidence 9999999999999 9999999999998 9999998854
No 9
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=100.00 E-value=2.1e-36 Score=218.09 Aligned_cols=112 Identities=29% Similarity=0.593 Sum_probs=105.0
Q ss_pred CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEe
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRL 82 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l 82 (171)
|||+|+|+|||++||++|++++|.++|+|+||+++++++++ |++++.++||+|++||++|+.+.++|+||+.|+|+|+|
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~-G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L 79 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQD-GTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRL 79 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSS-SCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCC-CCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEE
Confidence 69999999999999999999999999999999999999886 99988999999999999999999999999999999999
Q ss_pred eeeeeecCCCcEEEEEEEEEeEEEEccCCCCCC
Q psy14498 83 QTRKWTNKEGVEKYITEVIADNMQMLGSRKNTN 115 (171)
Q Consensus 83 ~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~~~~ 115 (171)
++++|+|++|++++.++|+|++|+||.++....
T Consensus 80 ~~~~~~dkdG~~r~~~ev~a~~i~~l~~~~~~~ 112 (134)
T 2vw9_A 80 TYESWMDQTGKKNSRHTITADSLQFMDKKSDNP 112 (134)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEEECCCC----
T ss_pred EeeeEECCCCCEEEEEEEEEEEEEEccCCcccc
Confidence 999999999999999999999999999876543
No 10
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=4.2e-36 Score=211.69 Aligned_cols=110 Identities=35% Similarity=0.672 Sum_probs=97.3
Q ss_pred CCccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeE
Q psy14498 2 ASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 2 ~~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~ 81 (171)
.|||+|+|+|||++||++|++++|.++++|+||++++|++.+ |++ +++||+|++||++|+.+.++|+||+.|+|+|+
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~-g~~--~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 79 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNAS-GEI--EADYVNCTLWRKTAENTALYCQKGSLVGVSGR 79 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSS-SCC--CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCC-Ccc--ccEEEEEEEECHHHHHHHHhCCCCCEEEEEEE
Confidence 489999999999999999999999999999999999998875 876 79999999999999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEeEEEEccCCCCC
Q psy14498 82 LQTRKWTNKEGVEKYITEVIADNMQMLGSRKNT 114 (171)
Q Consensus 82 l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~~~ 114 (171)
|++++|+|+||++++.++|+|++|+||+++.+.
T Consensus 80 l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~~~~ 112 (116)
T 3vdy_A 80 IQTRSYENEEGVNVYVTEVLADTVRFMDPKPRE 112 (116)
T ss_dssp EEEEEEC----CCEEEEEEEEEEEEECC-----
T ss_pred EEeeEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 999999999999999999999999999987653
No 11
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=100.00 E-value=2.6e-36 Score=217.26 Aligned_cols=113 Identities=37% Similarity=0.711 Sum_probs=100.6
Q ss_pred CC-CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccC-----CCCeeeeeceEEEEEEEh-HHHHHHHHHcCCC
Q psy14498 1 MA-SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDK-----NSGEKRELTEWHRITFYR-KLAQIVKQYLKKG 73 (171)
Q Consensus 1 M~-~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~-----~~G~~~~~~~~~~v~~~g-~~A~~~~~~l~kG 73 (171)
|+ +||+|+|+|||++||++|++++|.++|+|+||++++|++. .+|++.+.++||+|++|| ++|+.++++|+||
T Consensus 10 m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred hhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 66 8999999999999999999999999999999999999873 347777899999999999 5999999999999
Q ss_pred CEEEEEeEeeeeeeecCCCcEEEEEEEEEeEEEEccCCCC
Q psy14498 74 SQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKN 113 (171)
Q Consensus 74 ~~V~V~G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~~ 113 (171)
+.|+|+|+|++++|+|+||++++.++|+|++|+||.+++.
T Consensus 90 ~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~~k 129 (132)
T 3ull_A 90 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTK 129 (132)
T ss_dssp CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC-----
T ss_pred CEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCCc
Confidence 9999999999999999999999999999999999987754
No 12
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=100.00 E-value=2.8e-36 Score=243.48 Aligned_cols=112 Identities=38% Similarity=0.687 Sum_probs=97.3
Q ss_pred CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEe
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRL 82 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l 82 (171)
|||+|+|+|||++||++|++++|+++|+|+|+++++|++++ |+|.+.++||+|++||++|+.+.+ |+||+.|+|+|+|
T Consensus 128 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~-Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL 205 (301)
T 1se8_A 128 AMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQ-GQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRL 205 (301)
T ss_dssp CEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTT-SCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEE
T ss_pred ceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCC-CCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEE
Confidence 79999999999999999999999999999999999999886 998888999999999999999999 9999999999999
Q ss_pred eeeeeecCCCcEEEEEEEEEeEEEEccCCCCCCC
Q psy14498 83 QTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNE 116 (171)
Q Consensus 83 ~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~~~~~ 116 (171)
++++|+|+||++++.++|+|++|+||.++...+.
T Consensus 206 ~~~~y~dkdG~~r~~~ev~a~~i~~l~~k~~~~~ 239 (301)
T 1se8_A 206 VNEGWTDKDGNKRNSTRVEATRVEALARGAGNAN 239 (301)
T ss_dssp EEEECC------CEEEEEEEEEEEECCC------
T ss_pred eeeeEECCCCcEEEEEEEEEEEEEEeccCCCCCC
Confidence 9999999999999999999999999998765444
No 13
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=100.00 E-value=9e-35 Score=207.73 Aligned_cols=107 Identities=21% Similarity=0.303 Sum_probs=101.5
Q ss_pred CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeee-eceEEEEEEEhHHHHHHHHHcCCCCEEEEEeE
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRE-LTEWHRITFYRKLAQIVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~-~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~ 81 (171)
.+|+|+|+|||++||++|++++| ++|+|+||++++|+++++|+|.+ +++||+|++||++||.++++|+||++|+|+|+
T Consensus 14 ~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 92 (128)
T 4dam_A 14 NEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGR 92 (128)
T ss_dssp CCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEE
Confidence 38999999999999999999999 99999999999999876799987 89999999999999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 82 LQTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 82 l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
|++++| |+||++++.++|+|++|..--++
T Consensus 93 L~~~~~-dkdG~~r~~~ev~a~~vg~dL~~ 121 (128)
T 4dam_A 93 LKVRTD-VREGQSRTSADIDAVAIGHDLAR 121 (128)
T ss_dssp EEEEEE-EETTEEEEEEEEEEEEEEECTTS
T ss_pred EEEeEE-cCCCCEEEEEEEEEEEEEeccCc
Confidence 999999 89999999999999999876544
No 14
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=100.00 E-value=7.7e-35 Score=201.87 Aligned_cols=98 Identities=16% Similarity=0.311 Sum_probs=81.8
Q ss_pred CCccEEEEEEEeCCCCeEEEecCC-cEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEe
Q psy14498 2 ASVNKVIIIGNLGRDPETRYMSNG-DAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 2 ~~~N~v~l~G~l~~dp~~~~~~~g-~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G 80 (171)
+.||.|+|+|||++|||+|++++| .++|+|+||++ ++++++ +++||+|++||++||.+.+||+||++|+|+|
T Consensus 9 ~~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~-~~~~~~------~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFP-GLSSKD------APARLKVVGWGAVAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEEC-C-----------CCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred cccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEEC-CcccCC------CcEEEEEEEEhHHHHHHHHhCCCCCEEEEEE
Confidence 369999999999999999999998 89999999999 666542 6999999999999999999999999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEeEEE
Q psy14498 81 RLQTRKWTNKEGVEKYITEVIADNMQ 106 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i~a~~i~ 106 (171)
+|++++|+++||+++|.+||+|++|.
T Consensus 82 rL~~r~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 82 RLRINSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp EEEEEC--------CCEEEEEEEEEE
T ss_pred EEEeeeEECCCCCEEEEEEEEEEEEE
Confidence 99999999999999999999999985
No 15
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=100.00 E-value=2.8e-34 Score=218.11 Aligned_cols=107 Identities=28% Similarity=0.524 Sum_probs=82.9
Q ss_pred CCCccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeee-eceEEEEEEEhHHHHHHHHHcCCCCEEEEE
Q psy14498 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRE-LTEWHRITFYRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 1 M~~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~-~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~ 79 (171)
|+.+|+|+|+|||++||++|++++|++||+|+||++++++++++|+|++ +++||+|++|+++||.++++|+||++|+|+
T Consensus 1 Ma~~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~Ve 80 (199)
T 3eiv_A 1 MAGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQ 80 (199)
T ss_dssp ---CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred CCcccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEE
Confidence 9999999999999999999999999999999999997766655688876 799999999999999999999999999999
Q ss_pred eEeeeeeeecCCCcEEEEEEEEEeEEEE
Q psy14498 80 GRLQTRKWTNKEGVEKYITEVIADNMQM 107 (171)
Q Consensus 80 G~l~~~~~~~kdG~~~~~~~i~a~~i~~ 107 (171)
|+|++++|+|+||++++.++|+|++|..
T Consensus 81 GrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 81 GRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 9999999999999999999999999876
No 16
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=100.00 E-value=5.3e-34 Score=226.86 Aligned_cols=108 Identities=32% Similarity=0.573 Sum_probs=94.7
Q ss_pred CCccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeE
Q psy14498 2 ASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 2 ~~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~ 81 (171)
.+||+|+|+|||++||++|++++|+++|+|+||++++|+ |++.+.++||+|++||++|+.+. +|+||++|+|+|+
T Consensus 126 ~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~----g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~ 200 (264)
T 2fxq_A 126 RALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRR----GQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGR 200 (264)
T ss_dssp CCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-----------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEE
T ss_pred cceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcC----CCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEE
Confidence 379999999999999999999999999999999999887 55656799999999999999999 9999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEeEEEEccCCCCC
Q psy14498 82 LQTRKWTNKEGVEKYITEVIADNMQMLGSRKNT 114 (171)
Q Consensus 82 l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~~~ 114 (171)
|++++|+|++|++++.++|+|++|+||.++...
T Consensus 201 l~~~~~~~~dG~~~~~~ev~a~~i~~l~~~~~~ 233 (264)
T 2fxq_A 201 LVNDSWTSSSGERRFQTRVEALRLERPTRGPAQ 233 (264)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEECCCC----
T ss_pred EEeeEEECCCCCEEEEEEEEEEEEEECcccccc
Confidence 999999999999999999999999999877543
No 17
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=100.00 E-value=2.9e-34 Score=209.34 Aligned_cols=111 Identities=22% Similarity=0.282 Sum_probs=88.1
Q ss_pred CCCccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCe-eeeeceEEEEEEEhHH-HHHHHHHcCCCCEEEE
Q psy14498 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGE-KRELTEWHRITFYRKL-AQIVKQYLKKGSQIYI 78 (171)
Q Consensus 1 M~~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~-~~~~~~~~~v~~~g~~-A~~~~~~l~kG~~V~V 78 (171)
|++||+|+|+|||++||+ |++ +|+++|+|+||++++|++++ |+ +.+.++||+|++||++ |+.+++||+||++|+|
T Consensus 3 ~~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~-Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~V 79 (148)
T 3k7u_C 3 SKSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHP-TQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 79 (148)
T ss_dssp --CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC------------CEEEEEEEEESHHHHHHHHHHCCTTCEEEE
T ss_pred cccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCC-CCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEE
Confidence 448999999999999999 999 99999999999999998875 76 5568999999999997 9999999999999999
Q ss_pred EeEeeeeeeecCCCcEEEEEEEEEe-----EEEEccCCCCC
Q psy14498 79 EGRLQTRKWTNKEGVEKYITEVIAD-----NMQMLGSRKNT 114 (171)
Q Consensus 79 ~G~l~~~~~~~kdG~~~~~~~i~a~-----~i~~l~~~~~~ 114 (171)
+|+|++++|+|+||+++|.++|++- .+.+|.+++.+
T Consensus 80 eGrL~~r~~~dkdG~kr~~teVi~v~~~~g~~~ll~~~r~~ 120 (148)
T 3k7u_C 80 NGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRT 120 (148)
T ss_dssp EEEEEECCCSCCC-----CCEEEEECTTTCEEEEEECCC--
T ss_pred EEEEEeeeeECCCCCEEEEEEEEEEecCCCeEEEccCCCCC
Confidence 9999999999999999999999864 69999877554
No 18
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=100.00 E-value=3.4e-34 Score=205.36 Aligned_cols=108 Identities=17% Similarity=0.283 Sum_probs=96.5
Q ss_pred CCCccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEe
Q psy14498 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 1 M~~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G 80 (171)
|.|||+|+|+|||++|||+||+++|.+||+|+||++ ++++. +|++++.++||+|++||++||.+.+||+||++|+|+|
T Consensus 16 m~M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~-~~~~~-~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeG 93 (134)
T 1v1q_A 16 SLMTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHR-SVQEE-AGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQG 93 (134)
T ss_dssp GGCCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEE-EEEEE-TTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEE
T ss_pred CcceeEEEEEEEECcCCceEECCCCCEEEEEEEEEe-CcCcC-CCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEE
Confidence 445699999999999999999999999999999996 56655 3888778899999999999999999999999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEeEEEEccCCCCC
Q psy14498 81 RLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNT 114 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~~~ 114 (171)
+|++++ +++|++++.+ +|++|+||+++.+.
T Consensus 94 rL~tr~--~k~G~kr~~~--~a~~i~~l~~k~~~ 123 (134)
T 1v1q_A 94 FISCHK--AKNGLSKMVL--HAEQIELIDSVDKL 123 (134)
T ss_dssp EEEEEC--TTTTSCEEEE--EEEEEEETTSCSCC
T ss_pred EEEEEE--CCCCCEEEEE--EEEEEEECcCCCCc
Confidence 999984 6899988876 89999999877543
No 19
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=100.00 E-value=1.7e-33 Score=207.06 Aligned_cols=110 Identities=22% Similarity=0.287 Sum_probs=89.9
Q ss_pred CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHH-HHHHHHHcCCCCEEEEEeE
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL-AQIVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~-A~~~~~~l~kG~~V~V~G~ 81 (171)
+||+|+|+|||++|||+|+++ .+|++|+||++++++++++|++.++++||+|++||++ ||.+.+||+||++|+|+|+
T Consensus 21 smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V~VeGr 98 (164)
T 3k81_C 21 SVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGR 98 (164)
T ss_dssp CEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEECCE
T ss_pred CCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEEEEEEE
Confidence 699999999999999999998 7999999999988877666888778999999999999 9999999999999999999
Q ss_pred eeeeeeecCCCcEEE-EEEEEEe----EEEEccCCCCC
Q psy14498 82 LQTRKWTNKEGVEKY-ITEVIAD----NMQMLGSRKNT 114 (171)
Q Consensus 82 l~~~~~~~kdG~~~~-~~~i~a~----~i~~l~~~~~~ 114 (171)
|++++|+|++|++++ ..+|++. .|.+|+++..+
T Consensus 99 L~tr~w~D~~g~k~~~~~~i~V~~~~g~l~~L~~~r~~ 136 (164)
T 3k81_C 99 LRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRT 136 (164)
T ss_dssp EEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC----
T ss_pred EEeeeEEcCCCCEEEEEEEEEEeCCCCEEEEecCCCCC
Confidence 999999999987655 4555565 79999876544
No 20
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=100.00 E-value=1.1e-32 Score=222.46 Aligned_cols=112 Identities=36% Similarity=0.588 Sum_probs=95.0
Q ss_pred CC-CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHH-cCCCCEEEE
Q psy14498 1 MA-SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQY-LKKGSQIYI 78 (171)
Q Consensus 1 M~-~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~-l~kG~~V~V 78 (171)
|+ +||+|+|+|||++||++|++++|.++++|+||++++|++++ |++++.++||+|++||++|+.+.++ |+||++|+|
T Consensus 1 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~-G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~V 79 (301)
T 1se8_A 1 MARGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGND-GRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVV 79 (301)
T ss_dssp --CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC--------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEE
T ss_pred CCCceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCC-CCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEE
Confidence 88 89999999999999999999999999999999999999875 9888889999999999999999999 999999999
Q ss_pred EeEeeeeeeecCCCcEEEEEEEEEeEEEEccCCCC
Q psy14498 79 EGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKN 113 (171)
Q Consensus 79 ~G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~~ 113 (171)
+|+|++++|+|+||++++.++|+|++|+||.++.+
T Consensus 80 eG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 114 (301)
T 1se8_A 80 EGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPE 114 (301)
T ss_dssp EEEEEEEEEC-----CEEEEEEEEEEEEECSSCCC
T ss_pred EEEEEeeeEECCCCCEEEEEEEEEeEEEEeecccc
Confidence 99999999999999999999999999999988754
No 21
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.98 E-value=5.4e-32 Score=215.28 Aligned_cols=110 Identities=33% Similarity=0.637 Sum_probs=94.8
Q ss_pred CC-CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEE
Q psy14498 1 MA-SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 1 M~-~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~ 79 (171)
|+ +||+|+|+|||++||++|++++|.++++|+||+++++++++ |++.+.++||+|++||++|+.+.++|+||++|+|+
T Consensus 1 M~~~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~-G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~ 79 (264)
T 2fxq_A 1 MARGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDES-GQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVE 79 (264)
T ss_dssp --CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTT-SCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEE
T ss_pred CCCceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCC-CCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEE
Confidence 77 79999999999999999999999999999999999999875 98888899999999999999999999999999999
Q ss_pred eEeeeeeeecCCCcEEEEEEEEEeEEEEccCCC
Q psy14498 80 GRLQTRKWTNKEGVEKYITEVIADNMQMLGSRK 112 (171)
Q Consensus 80 G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~~ 112 (171)
|+|++++|++ +|++++.++|+|++|.||.++.
T Consensus 80 G~L~~~~~~~-dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 80 GRLEYRQWEK-DGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp EEEEEC----------CCEEEEEEEEEECCCC-
T ss_pred EEEEeeeEEe-CCEEEEEEEEEEEEEEECcCCc
Confidence 9999999998 9999999999999999998876
No 22
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.97 E-value=5e-31 Score=182.28 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=80.3
Q ss_pred CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEe
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRL 82 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l 82 (171)
|||+|+|+|||++||++|++++|.++++|+||++. +... ++-.+..+.||+|++||++|+.+.+||+||++|+|+|+|
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~-~~~~-~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L 78 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRS-VQEE-AGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFI 78 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE-EEEE-TTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEE
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeC-cccc-CCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEE
Confidence 68999999999999999999999999999999953 2221 232233455599999999999999999999999999999
Q ss_pred eeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 83 QTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 83 ~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
+++ +|++|+++ ++|+|++|+||+++
T Consensus 79 ~~~--~~~~G~~r--~~v~~~~i~~l~~~ 103 (104)
T 1txy_A 79 SCH--KAKNGLSK--MVLHAEQIELIDSG 103 (104)
T ss_dssp EC----------C--CEEEEEEEEEC---
T ss_pred Eec--cCCCCCEE--EEEEEEEEEECcCC
Confidence 999 67999988 89999999999764
No 23
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.97 E-value=2.7e-30 Score=203.29 Aligned_cols=106 Identities=25% Similarity=0.354 Sum_probs=96.5
Q ss_pred CCCccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHH--HHHHHHHcCCCCEEEE
Q psy14498 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL--AQIVKQYLKKGSQIYI 78 (171)
Q Consensus 1 M~~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~--A~~~~~~l~kG~~V~V 78 (171)
|++||+|+|+||| +||++|+++ |+++++|+||++++|++++.+++.++++||+|++||++ |+ ++++|+||++|+|
T Consensus 143 M~~lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~V 219 (257)
T 4dni_A 143 MKSVNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCV 219 (257)
T ss_dssp TSCEEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEE
T ss_pred ccccCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEE
Confidence 8889999999999 999999999 99999999999999998765555668999999999999 99 8889999999999
Q ss_pred EeEeeeeeeecCCCcEEEEEEE-EEe----EEEEcc
Q psy14498 79 EGRLQTRKWTNKEGVEKYITEV-IAD----NMQMLG 109 (171)
Q Consensus 79 ~G~l~~~~~~~kdG~~~~~~~i-~a~----~i~~l~ 109 (171)
+|+|++++|+|++|+++|.+++ .|. .+.+|.
T Consensus 220 eGrL~tr~~~D~~G~kr~~~~vI~V~~~~g~v~~l~ 255 (257)
T 4dni_A 220 NGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIH 255 (257)
T ss_dssp EEEEEEEEEECSSSSCEEEEEEEEECTTTCEEEECC
T ss_pred EEEEEeeeEEcCCCCEEEEEEEEEEECCCCEEEEec
Confidence 9999999999999999888875 455 677775
No 24
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.97 E-value=2.9e-30 Score=177.68 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=87.1
Q ss_pred CCCccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEe
Q psy14498 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 1 M~~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G 80 (171)
|+|+|+|+|+|||++|||+||+++|.++|+|+||+++.++ . +|++++.++||+|++||++|| +.+ |+||++|+|+|
T Consensus 4 m~m~Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~-~-~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veG 79 (103)
T 3k8a_A 4 MGFTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQE-E-NGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEG 79 (103)
T ss_dssp CCCCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEE-E-TTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEE
T ss_pred cccccEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCc-c-CCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEE
Confidence 7656999999999999999999999999999999987765 3 387766677799999999999 655 99999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEeEEEEcc
Q psy14498 81 RLQTRKWTNKEGVEKYITEVIADNMQMLG 109 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i~a~~i~~l~ 109 (171)
+|++++|. |. .+.+.+++|++++
T Consensus 80 rL~~rs~~---~~---~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 80 FLAQKSRR---SL---MPMLRIQNIKEYK 102 (103)
T ss_dssp EEEESSSS---CC---CEEEEEEEEEECC
T ss_pred EEEECccC---Cc---cEEEEEEEEEEcC
Confidence 99999993 33 7789999999984
No 25
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.97 E-value=2.4e-30 Score=178.44 Aligned_cols=94 Identities=22% Similarity=0.329 Sum_probs=79.9
Q ss_pred cEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEeee
Q psy14498 5 NKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRLQT 84 (171)
Q Consensus 5 N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~~ 84 (171)
|+|+|+|||++||++|++++|.++++|+||++|.+. .++|++|++|+++|+.+. +.||++|+|+|+|++
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~---------~~Dfi~ivvw~klAe~~~--~~kG~~v~v~G~lrs 80 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSE---------TKDYLPITISNRLFEGMN--LEVGTRVKIEGQLRS 80 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTS---------CEEEEEEEEEGGGSTTCC--CCTTCEEEEEEEEEE
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCC---------CCcEEEEEEEhHHhhHHh--hcCCCEEEEEEEEEe
Confidence 999999999999999999999999999999998641 489999999999999875 569999999999997
Q ss_pred -eeeecCCCcEEEEEEEEEeEEEEcc
Q psy14498 85 -RKWTNKEGVEKYITEVIADNMQMLG 109 (171)
Q Consensus 85 -~~~~~kdG~~~~~~~i~a~~i~~l~ 109 (171)
+.|++++|++|+.++|+|++|+||+
T Consensus 81 y~~~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 81 YNRKSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp EECC--------EEEEEEEEEEEEEC
T ss_pred cceEECCCCCEEEEEEEEEEEEEEcc
Confidence 8899999999999999999999995
No 26
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.97 E-value=1e-29 Score=177.78 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=87.5
Q ss_pred ccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEee
Q psy14498 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRLQ 83 (171)
Q Consensus 4 ~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~ 83 (171)
||+|+|+|||++||++|||++|.++|+|+||+++. ++.. |..++.++||+|++||++||.+ +||+||++|+|+|+|+
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~-~~~~-g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~ 77 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESE-VVEA-GHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLA 77 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEE-CCCC-C--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcce-eecC-CCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEE
Confidence 79999999999999999999999999999999654 4433 6655677789999999999998 9999999999999999
Q ss_pred eeeeecCCCcEEEEEEEEEeEEEEccCCC
Q psy14498 84 TRKWTNKEGVEKYITEVIADNMQMLGSRK 112 (171)
Q Consensus 84 ~~~~~~kdG~~~~~~~i~a~~i~~l~~~~ 112 (171)
+++ ++| +.++|.|++|++|+++.
T Consensus 78 trs---~~G---~kl~l~a~~Ie~l~~~~ 100 (115)
T 3fhw_A 78 PAR---KDS---VKVKLHLQQARRIAGSM 100 (115)
T ss_dssp ESS---TTC---SSEEEEEEEEEECCCSC
T ss_pred ECC---CCC---CEEEEEEEEEEEcCCCC
Confidence 985 678 57899999999997664
No 27
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.94 E-value=2e-26 Score=157.42 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=71.3
Q ss_pred ccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEee
Q psy14498 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRLQ 83 (171)
Q Consensus 4 ~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~ 83 (171)
||+|+|+|||++||++|||++|.++++|+||+++.+++. |..++..+|++|++||++||.+.+ +.||+.|.|+|+|+
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~--g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~ 78 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEA--QAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLA 78 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC----EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEE
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecC--CCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEE
Confidence 899999999999999999999999999999998765543 555556777999999999999997 78999999999999
Q ss_pred eeeeecC
Q psy14498 84 TRKWTNK 90 (171)
Q Consensus 84 ~~~~~~k 90 (171)
+++|.++
T Consensus 79 trs~~s~ 85 (101)
T 3en2_A 79 RKHRSSK 85 (101)
T ss_dssp ECC----
T ss_pred eCcCCCC
Confidence 9999754
No 28
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.91 E-value=1.5e-23 Score=151.01 Aligned_cols=93 Identities=19% Similarity=0.326 Sum_probs=83.6
Q ss_pred CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEh-HHHHHHHHHcCCCCEEEEEeE
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR-KLAQIVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g-~~A~~~~~~l~kG~~V~V~G~ 81 (171)
.+|+|+|+|||. ||+.+++. +.+++.|+|++++.++.. |+. .++||+|.+|| ++|+.+.++|+||++|+|+||
T Consensus 43 ~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r~--ge~--~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGR 116 (148)
T 3stb_C 43 CVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPSP--GDP--DKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGR 116 (148)
T ss_dssp CSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCCT--TSC--SEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCCC--CCC--ccceEEEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 689999999996 89999995 779999999999987643 543 79999999995 899999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEE
Q psy14498 82 LQTRKWTNKEGVEKYITEVI 101 (171)
Q Consensus 82 l~~~~~~~kdG~~~~~~~i~ 101 (171)
|++++|+|++|+++|.+-++
T Consensus 117 Lrmn~~~d~~gkk~Y~~p~i 136 (148)
T 3stb_C 117 LRMVPQYDGSMRKYYHYPVI 136 (148)
T ss_dssp EEEEEEEETTTTEEEEEEEE
T ss_pred EEcceeECCCCCEEeeccEE
Confidence 99999999999999887664
No 29
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.90 E-value=1.3e-23 Score=165.27 Aligned_cols=99 Identities=15% Similarity=0.258 Sum_probs=86.7
Q ss_pred CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEh-HHHHHHHHHcCCCCEEEEEeE
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR-KLAQIVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g-~~A~~~~~~l~kG~~V~V~G~ 81 (171)
+||+|+|+|||++| |+|||++|. ++.|+|++.+.++. .|+. .++|+.|++|| ++||.+.+||+||++|+|+|+
T Consensus 29 ~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~--~ge~--~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGr 102 (257)
T 4dni_A 29 CVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPS--PGDP--DKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGR 102 (257)
T ss_dssp CSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCC--SSCC--CEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEE
T ss_pred cCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCC--CCCC--cccEEEEEEECCHHHHHHHHhccCCCEEEEEEE
Confidence 79999999999999 999999883 77777777776543 2653 46678888999 999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEeEEEEcc
Q psy14498 82 LQTRKWTNKEGVEKYITEVIADNMQMLG 109 (171)
Q Consensus 82 l~~~~~~~kdG~~~~~~~i~a~~i~~l~ 109 (171)
|++ |+++||++++.++|++.++..+.
T Consensus 103 L~~--~~~~dG~kr~~~evva~~v~~~~ 128 (257)
T 4dni_A 103 LRM--VPQYDGSMRKYYHYPVIQVHPGC 128 (257)
T ss_dssp EEE--EEEECSSSSSEEEEEEEEECTTT
T ss_pred EEE--eECCCCCcEEEEEEEEEEEEecC
Confidence 999 88899999999999999998764
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=98.18 E-value=2.1e-05 Score=52.64 Aligned_cols=79 Identities=15% Similarity=0.310 Sum_probs=52.1
Q ss_pred EEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHH--HHHHHHcCCCCEEEEEeEee
Q psy14498 6 KVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLA--QIVKQYLKKGSQIYIEGRLQ 83 (171)
Q Consensus 6 ~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A--~~~~~~l~kG~~V~V~G~l~ 83 (171)
.++|+|++-. .+.-+. ....+..|+|.++- +..-+.++|.|.+||+.+ +.+.+.|+.|+.|.|.|+|+
T Consensus 5 n~vlvG~V~D-VQ~Gfl-~~~~V~Qftl~~d~--------e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLR 74 (105)
T 4dka_C 5 NALMIGRIAD-VQHGFL-GAMTVTQYVLEVDG--------GASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLR 74 (105)
T ss_dssp EEEEEEEEEE-EEEEEE-TTEEEEEEEEEECC------------CCEEEEEEEECC---------CCCTTCEEEEEEEEE
T ss_pred ceEEEEEEEE-eeeccc-ccceEEEEEEEEeC--------CCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEE
Confidence 5788999864 333222 23579999999942 222368899999999966 78899999999999999999
Q ss_pred eeeeecCCCcEE
Q psy14498 84 TRKWTNKEGVEK 95 (171)
Q Consensus 84 ~~~~~~kdG~~~ 95 (171)
+..--| .+.++
T Consensus 75 m~p~~d-~~~kk 85 (105)
T 4dka_C 75 MNRHVD-DVSKR 85 (105)
T ss_dssp CCCEEC-TTTCS
T ss_pred eeeccc-cccce
Confidence 987654 34444
No 31
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=97.22 E-value=0.0019 Score=43.71 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=57.5
Q ss_pred cEEEEEEEeCCCCeEEEe--cCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEe
Q psy14498 5 NKVIIIGNLGRDPETRYM--SNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRL 82 (171)
Q Consensus 5 N~v~l~G~l~~dp~~~~~--~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l 82 (171)
+.|.|+|+|..--++|.+ .+|.....++|.+.+. || -+++++|++.|+. .|.+|+.|.|.|+.
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~-----TG-------~IrvtlW~~~a~~---~l~~Gdvv~i~g~v 79 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDE-----TG-------SIRVTLWDNLTDI---DVGRGDYVRVRGYI 79 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEET-----TE-------EEEEEEEGGGGGS---CCCTTCEEEEEEEE
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECC-----CC-------cEEEEEECccccc---ccCCCCEEEEEEEE
Confidence 679999999988777765 3676555555555431 23 4799999998876 69999999998877
Q ss_pred eeeeeecCCCcEEEEEEEEEeEEEEcc
Q psy14498 83 QTRKWTNKEGVEKYITEVIADNMQMLG 109 (171)
Q Consensus 83 ~~~~~~~kdG~~~~~~~i~a~~i~~l~ 109 (171)
+... .| .++|.+.+...|.
T Consensus 80 k~~~----~g----~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 80 REGY----YG----GLECTANYVEILK 98 (105)
T ss_dssp EECT----TS----SEEEEEEEEEEEE
T ss_pred EEcc----CC----CEEEEeCCceEEE
Confidence 7542 22 3366666665554
No 32
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=97.00 E-value=0.0067 Score=40.25 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=53.1
Q ss_pred cEEEEEEEeCCCCeEEEe--cCCc--EEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEe
Q psy14498 5 NKVIIIGNLGRDPETRYM--SNGD--AVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 5 N~v~l~G~l~~dp~~~~~--~~g~--~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G 80 (171)
..+.|+|+|.+--+++.+ ++|. .+.++.|+ + +|--+++++|++.|+. .++.|+.|.|.|
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~--D------------eTG~I~~tlW~~~~~~---~i~~Gdvv~i~g 74 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLK--D------------DTGSIRGTLWNELADF---EVKKGDIAEVSG 74 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEE--E------------TTEEEEEEEEGGGGGC---CCCTTCEEEEEE
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE--C------------CCCcEEEEEECCcccc---ccCCCCEEEEEE
Confidence 679999999987766664 3664 45555442 2 1335799999998876 599999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEeEEEEcc
Q psy14498 81 RLQTRKWTNKEGVEKYITEVIADNMQMLG 109 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i~a~~i~~l~ 109 (171)
+.+ .|. | .+++.+.+...+.
T Consensus 75 ~v~--~~~---~----~~el~~g~~~~i~ 94 (97)
T 3e0e_A 75 YVK--QGY---S----GLEISVDNIGIIE 94 (97)
T ss_dssp EEE--EC---------CEEEEEEEEEEEE
T ss_pred EEE--EcC---C----eEEEEECCCcEEE
Confidence 764 332 1 5577777666554
No 33
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.65 E-value=0.0074 Score=41.04 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=48.4
Q ss_pred EEEEEEEeCCCCeEE--EecCC--cEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeE
Q psy14498 6 KVIIIGNLGRDPETR--YMSNG--DAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 6 ~v~l~G~l~~dp~~~--~~~~g--~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~ 81 (171)
.+.++|.|.+--+++ .+++| ..++.+.|.=. || -+++++|+..++.+ +.|.+|+.|.|.|.
T Consensus 18 ~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~-------TG-------~I~~t~w~~~~~~~-~~l~~G~vv~i~g~ 82 (115)
T 2k50_A 18 ETPVTGRVMKISSPRTFTTRKGREGKLANVIIADD-------TG-------ELRAVFWTENIKLL-KKFREGDVIRIKDV 82 (115)
T ss_dssp EEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEET-------TE-------EEEEEEETTGGGGG-GTCCTTSEEEEEEE
T ss_pred EeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeC-------CC-------eEEEEEeCchhhhh-hcCCCCCEEEEEee
Confidence 468899998864566 45577 56666655421 23 57999999987654 56999999999998
Q ss_pred eeeeeee
Q psy14498 82 LQTRKWT 88 (171)
Q Consensus 82 l~~~~~~ 88 (171)
.-...|.
T Consensus 83 ~v~~~f~ 89 (115)
T 2k50_A 83 NIRGGFG 89 (115)
T ss_dssp EECCCSS
T ss_pred EEccccC
Confidence 7444463
No 34
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=96.64 E-value=0.064 Score=34.85 Aligned_cols=90 Identities=21% Similarity=0.199 Sum_probs=61.1
Q ss_pred CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEe
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRL 82 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l 82 (171)
|+|.|.|.|.|-+ .+-+.+-+ -|.|-+...+.= |+. .-|+|+-+-+-|.+|-.+.+|..|=..|.|+|.|
T Consensus 7 MLN~V~LEG~IeS---~kWS~kKT---GF~VTIkQkR~F---Ger-~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L 76 (110)
T 2hql_A 7 MLNRVFLEGEIES---SCWSVKKT---GFLVTIKQMRFF---GER-LFTDYYVIYANGQLAYELEKHTKKYKTISIEGIL 76 (110)
T ss_dssp CCEEEEEEEEEEE---EEECTTCS---EEEEEEEEEEEE---TTE-EEEEEEEEEEEHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred eEEEEEEeeeeeh---hcccccCc---eEEEEEeehhhh---ccc-cceeEEEEEECCeeehhHHHhhhhceEEEEeeeh
Confidence 7899999999875 33333322 233433332221 432 2488999999999999999999999999999999
Q ss_pred eeeeeecCCCcEEEEEEEEEeEE
Q psy14498 83 QTRKWTNKEGVEKYITEVIADNM 105 (171)
Q Consensus 83 ~~~~~~~kdG~~~~~~~i~a~~i 105 (171)
++..=. +.+ ...+.|.+..|
T Consensus 77 ~TY~ek-kS~--iWKTtI~~~KI 96 (110)
T 2hql_A 77 RTYLER-KSE--IWKTTIEIVKI 96 (110)
T ss_dssp EEEEET-TTT--EEEEEEEEEEE
T ss_pred hhHHHH-hcc--cceeEEEEEEE
Confidence 875432 344 45566666544
No 35
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.012 Score=40.18 Aligned_cols=68 Identities=26% Similarity=0.343 Sum_probs=51.6
Q ss_pred CccEEEEEEEeCCCCeEEEecC--C-cEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEE
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSN--G-DAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~--g-~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~ 79 (171)
+++.+.|.|||.+--++|...+ | ..+..|.|+ |. +| -+++++|+++|+.+...|+.|+.++|+
T Consensus 13 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~------De-~G-------~I~at~~~~~~~~f~~~l~eG~vy~Is 78 (114)
T 1ynx_A 13 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL------DT-SG-------EIRATAFNDFATKFNEILQEGKVYYVS 78 (114)
T ss_dssp TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE------ET-TE-------EEEEEECHHHHHHHHHHSCSSSEEEEE
T ss_pred CCCceEEEEEEEEeccceEEecCCCCceEEEEEEE------CC-CC-------eEEEEECHHHHHHHHhhcccCcEEEEC
Confidence 5678999999999888887653 2 244444432 22 23 579999999999999999999999999
Q ss_pred e-Eeee
Q psy14498 80 G-RLQT 84 (171)
Q Consensus 80 G-~l~~ 84 (171)
+ +++.
T Consensus 79 ~~~V~~ 84 (114)
T 1ynx_A 79 KAKLQP 84 (114)
T ss_dssp SCEEEE
T ss_pred CcEEEE
Confidence 7 5543
No 36
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=95.71 E-value=0.16 Score=46.97 Aligned_cols=85 Identities=16% Similarity=0.333 Sum_probs=62.9
Q ss_pred ccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhH--HHHHHHHHcCCCCEEEEEeE
Q psy14498 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK--LAQIVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 4 ~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~--~A~~~~~~l~kG~~V~V~G~ 81 (171)
+..|+|.|.|-. .+.|.+++|+.+..|.| .+ .|+-+.|..|-+ ....+.+.|++|++|.|.|.
T Consensus 17 ~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~--td------------~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~ 81 (1041)
T 3f2b_A 17 ERRVVVQGYVFD-AEVSELKSGRTLLTMKI--TD------------YTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGS 81 (1041)
T ss_dssp EEEEEEEEEEEE-EEEEECTTSCEEEEEEE--EC------------SSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEE
T ss_pred cceEEEEEEEEE-EEEEEccCCCEEEEEEE--Ee------------CCCCEEEEEeecccchHHHHhcCCCCCEEEEEEE
Confidence 578999999987 88999999988776666 22 255678888854 33345566999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEeEEEEccC
Q psy14498 82 LQTRKWTNKEGVEKYITEVIADNMQMLGS 110 (171)
Q Consensus 82 l~~~~~~~kdG~~~~~~~i~a~~i~~l~~ 110 (171)
++...|. ++ +.+.+.+|..+..
T Consensus 82 ~~~d~~~-~~------~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 82 VQNDTFV-RD------LVIIANDLNEIAA 103 (1041)
T ss_dssp EEEETTT-TE------EEEEEEEEEEECC
T ss_pred EEeccCC-cc------eEEEeeeeEEecc
Confidence 9999885 32 2466667766654
No 37
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=95.09 E-value=0.15 Score=34.11 Aligned_cols=60 Identities=25% Similarity=0.368 Sum_probs=44.8
Q ss_pred CccEEEEEEEeCCCCeEEEecCCcE--EEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEE-
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSNGDA--VTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIE- 79 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~g~~--~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~- 79 (171)
.++.|.++++|..--+.+.+++|+. ++.+.|+ + . || -+++++|++. |.+|+.|.|.
T Consensus 12 g~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~--D----e-TG-------~I~~tlW~~~-------l~~Gdvv~i~n 70 (106)
T 2k75_A 12 STPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE--D----D-TA-------RIRISSFGKQ-------LQDSDVVRIDN 70 (106)
T ss_dssp TCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE--C----S-SC-------EEEEEEESSC-------CCTTEEEEEEE
T ss_pred CCceEEEEEEEEEccccccccCCCeeEEEEEEEE--c----C-CC-------eEEEEEEcCc-------cCCCCEEEEEe
Confidence 4567899999988766666668864 6655554 2 1 35 4799999987 9999999999
Q ss_pred eEee
Q psy14498 80 GRLQ 83 (171)
Q Consensus 80 G~l~ 83 (171)
|..+
T Consensus 71 g~v~ 74 (106)
T 2k75_A 71 ARVA 74 (106)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 7765
No 38
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=94.84 E-value=0.1 Score=35.56 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=43.9
Q ss_pred ccEEEEEEEeCCCCeEE--EecCCc-EEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEE-
Q psy14498 4 VNKVIIIGNLGRDPETR--YMSNGD-AVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIE- 79 (171)
Q Consensus 4 ~N~v~l~G~l~~dp~~~--~~~~g~-~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~- 79 (171)
.+.|.++|.|.+.-+++ .+++|+ .+.++.|+ +. || -+++.+|+..|+ .+..|+.|.|.
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~--D~-----TG-------~I~~tlW~~~~~----~~~~G~vv~i~~ 73 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVG--DE-----TG-------RVKLTLWGKHAG----SIKEGQVVKIEN 73 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE--ET-----TE-------EEEEEEEGGGTT----CCCTTCEEEEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEE--eC-----CC-------EEEEEEECChhh----cCCCCCEEEEEe
Confidence 34688888887764444 456786 55555553 21 23 479999999874 48999999999
Q ss_pred eEeee
Q psy14498 80 GRLQT 84 (171)
Q Consensus 80 G~l~~ 84 (171)
|++..
T Consensus 74 g~v~~ 78 (119)
T 1o7i_A 74 AWTTA 78 (119)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77753
No 39
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=94.27 E-value=0.52 Score=38.99 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=55.2
Q ss_pred CccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEh--HHHHHHHHHcCCCCEEEEEe
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR--KLAQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g--~~A~~~~~~l~kG~~V~V~G 80 (171)
.+-.+.+.|.|...|.. ..+| -+-|+|.-. ..-++|++|. +....+...|..||.|.|.|
T Consensus 283 ~~~~~~v~G~V~~~P~~--~~GG--HV~f~l~d~--------------~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G 344 (402)
T 3au7_A 283 NYRSYRLRGRVTLEPYD--IEGG--HVFFEIDTK--------------FGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYG 344 (402)
T ss_dssp TTCEEEEEEEEEEEEEE--ETTT--EEEEEEEET--------------TEEEEEEECGGGTTHHHHHTTCCTTCEEEEEE
T ss_pred cCceEEEEEEEecCcEe--ccCc--eEEEEEEcC--------------CCEEEEEEEccchHHHHHHhcCCCCCEEEEEE
Confidence 35578888888876644 3345 344666431 2357999998 55666777799999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 81 RLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
.++. | .|.+++|.++.-.
T Consensus 345 ~v~~-------g------tLnvEk~~v~~l~ 362 (402)
T 3au7_A 345 SMKK-------D------TINLEKIQIVELA 362 (402)
T ss_dssp EEET-------T------EEEEEEEEEEECC
T ss_pred eecC-------C------EEEEEEEEEcccC
Confidence 9653 4 6788888887553
No 40
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=94.19 E-value=0.19 Score=38.29 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=48.2
Q ss_pred CccEEEEEEEeCCCCeEEEecC-CcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEe
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSN-GDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~-g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G 80 (171)
+++.+.|.|||.+--++|...+ +..--.|++.+-+ . +| -+++++|+++++.+...|+.|+.++|++
T Consensus 17 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~D----e-~G-------~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 17 YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD----E-SG-------EIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEEC----S-SC-------EEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCCceEEEEEEEEecccceeeCCCCCceEEEEEEEC----C-CC-------eEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 4677899999998877776542 2222234443322 2 23 5799999999999999999999999998
No 41
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=92.71 E-value=0.23 Score=33.17 Aligned_cols=25 Identities=20% Similarity=0.533 Sum_probs=15.9
Q ss_pred HHcCCCCEEEEEeEeeeeeeecCCCcEEE
Q psy14498 68 QYLKKGSQIYIEGRLQTRKWTNKEGVEKY 96 (171)
Q Consensus 68 ~~l~kG~~V~V~G~l~~~~~~~kdG~~~~ 96 (171)
..+.-||.|.|.|+++... +|+..+
T Consensus 52 d~v~~GDivTvsgri~~ke----~G~y~n 76 (119)
T 2wkd_A 52 DFIQMGDTVTVSGRVQAKE----SGEYVN 76 (119)
T ss_dssp TTCCTTCEEEEEEEEEEC----------C
T ss_pred ccccCCcEEEEeceeeeec----cCceEe
Confidence 3488999999999998653 566543
No 42
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=92.67 E-value=0.75 Score=35.65 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=43.5
Q ss_pred ceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEeeeeeee--cCCCcEEEEEEEEEeEEEEcc
Q psy14498 51 TEWHRITFYRKLAQIVKQYLKKGSQIYIEGRLQTRKWT--NKEGVEKYITEVIADNMQMLG 109 (171)
Q Consensus 51 ~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~~~~~~--~kdG~~~~~~~i~a~~i~~l~ 109 (171)
+..+.|++.+++.+. ++.||+|.|.|-++..... .+.+...+.+.|.|.+|+.+.
T Consensus 210 Prsi~v~l~~dLvd~----~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 210 PRQLEIILEDDLVDS----ARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp CCEEEEEEEGGGTTS----SCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred CcEEEEEEccCccCc----ccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 678899999988765 8999999999998876543 234556788889999998875
No 43
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=91.59 E-value=0.49 Score=39.40 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=49.6
Q ss_pred CccEEEEEEEeCCCCeEEEecC--C-cEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEE
Q psy14498 3 SVNKVIIIGNLGRDPETRYMSN--G-DAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 3 ~~N~v~l~G~l~~dp~~~~~~~--g-~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~ 79 (171)
.++.++|.|||...-.+|...+ | ..+..|.| -+ . +| -+++++|+.+++.+...|+.|+.++|+
T Consensus 12 ~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L--~D----e-~G-------~I~at~~~~~~~~f~~~l~eG~vy~Is 77 (444)
T 4gop_C 12 YQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNL--LD----D-SG-------EIKATGFNDAVDRFYPLLQENHVYLIS 77 (444)
T ss_dssp TCCSCEEEEECCEECCCEEEECSSCEEEEEEEEE--EC----S-SC-------EEEEEEETHHHHHHTTTCCTTCEEEEE
T ss_pred CCcceEEEEEEEEccCcceecCCCCCceEEEEEE--Ec----C-CC-------EEEEEEeHHHHHHHHHheecCCEEEEc
Confidence 4677899999998777776643 3 23444443 22 2 24 479999999999999999999999999
Q ss_pred e-Eee
Q psy14498 80 G-RLQ 83 (171)
Q Consensus 80 G-~l~ 83 (171)
+ +++
T Consensus 78 ~~~V~ 82 (444)
T 4gop_C 78 KARVN 82 (444)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 7 443
No 44
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=91.41 E-value=0.38 Score=45.13 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEeeee
Q psy14498 6 KVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRLQTR 85 (171)
Q Consensus 6 ~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~~~ 85 (171)
.|.+.|-|.. ...+.|++|..++-++|.= .+--++|++|.+.-+.+...|..+..|.|+|+++.+
T Consensus 1044 ~v~v~G~v~~-~~~~~Tk~G~~maf~tleD--------------~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~ 1108 (1220)
T 2hpi_A 1044 KVLLSGMVEE-VVRKPTRSGGMMARFTLSD--------------ETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKG 1108 (1220)
T ss_dssp EEEEEEEECC-C------------CEEEEE--------------TTEEEEEC-------------CTTCEEEEEEEEC--
T ss_pred eEEEEEEEEE-EEEeecCCCCeEEEEEEEE--------------CCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEEC
Confidence 4677777775 4555667787777777742 233479999999888999999999999999999732
Q ss_pred eeecCCCcEEEEEEEEEeEEEEcc
Q psy14498 86 KWTNKEGVEKYITEVIADNMQMLG 109 (171)
Q Consensus 86 ~~~~kdG~~~~~~~i~a~~i~~l~ 109 (171)
+ .+.|+|++|.-|.
T Consensus 1109 ------~----~~~l~~~~i~~l~ 1122 (1220)
T 2hpi_A 1109 ------E----ELRVLAQAVWTLE 1122 (1220)
T ss_dssp -------------CEEEEEEEEHH
T ss_pred ------C----CcEEEEeeeecHH
Confidence 1 2568888887664
No 45
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=88.64 E-value=7.5 Score=32.81 Aligned_cols=59 Identities=8% Similarity=-0.055 Sum_probs=39.7
Q ss_pred eEEEEEEEhH-------HHHHHHHHcCCCCEEEEEeEeeeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 52 EWHRITFYRK-------LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 52 ~~~~v~~~g~-------~A~~~~~~l~kG~~V~V~G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
..+.|++-.+ ..-..++.|..|+.|.|+|.+..+.-..++ ...-.+||.|++|.+|...
T Consensus 65 g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~-~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 65 SLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKS-ATVQNLEIHITKIYTISET 130 (487)
T ss_dssp EEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTT-SSEEEEEEEEEEEEEEECC
T ss_pred ccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcC-CCCCcEEEEEEEEEEeecc
Confidence 3567776422 122334569999999999999877532221 2345789999999999743
No 46
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=88.54 E-value=1.1 Score=31.12 Aligned_cols=78 Identities=8% Similarity=0.146 Sum_probs=49.9
Q ss_pred ccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHH---HHHHcCCCCEEEEEe
Q psy14498 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQI---VKQYLKKGSQIYIEG 80 (171)
Q Consensus 4 ~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~---~~~~l~kG~~V~V~G 80 (171)
++.|.|+|.|..- . .+..++.|+|. |. || -+.|..|....+. -...+..|+.|.|.|
T Consensus 36 i~~V~iVG~V~~~---~---~~~~~~~~~ld------D~-TG-------~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G 95 (136)
T 4gop_B 36 LGQLTFVAVVRNI---S---RNATNVAYSVE------DG-TG-------QIEVRQWLDSSSDDSSKASEIRNNVYVRVLG 95 (136)
T ss_dssp CCEEEEEEEEEEE---E---ECSSEEEEEEE------CS-SC-------EEEEEEECC--------CCSCCTTCEEEEEE
T ss_pred EEEEEEEEEEEEE---E---ecCCeEEEEEE------CC-CC-------CEEEEEecccCCcccccccccCCCCEEEEEE
Confidence 6789999998752 1 23456666663 21 34 4688889754331 234599999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEeEEEEccC
Q psy14498 81 RLQTRKWTNKEGVEKYITEVIADNMQMLGS 110 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~ 110 (171)
+++. |. |+ ..|.+..|..+..
T Consensus 96 ~v~~--f~---g~----~qi~~~~ir~v~d 116 (136)
T 4gop_B 96 TLKS--FQ---NR----RSISSGHMRPVID 116 (136)
T ss_dssp EEEE--ET---TE----EEEEESEEEECSS
T ss_pred EEEE--eC---CE----EEEEEEEEEECCC
Confidence 9975 53 32 3577777777643
No 47
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=88.49 E-value=1.5 Score=30.21 Aligned_cols=79 Identities=10% Similarity=0.186 Sum_probs=47.8
Q ss_pred ccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHH--HHHHcCCCCEEEEEeE
Q psy14498 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQI--VKQYLKKGSQIYIEGR 81 (171)
Q Consensus 4 ~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~--~~~~l~kG~~V~V~G~ 81 (171)
++.|.|+|.|..- . ....++.|+|. + . ||. -+.|..|....+. -...+..|+.|.|.|+
T Consensus 31 i~~V~iVG~V~~~---~---~~~~~~~~~ld--D----~-TG~------~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~ 91 (132)
T 3kdf_D 31 ISQVTIVGIIRHA---E---KAPTNIVYKID--D----M-TAA------PMDVRQWVDTDDTSSENTVVPPETYVKVAGH 91 (132)
T ss_dssp CCEEEEEEEEEEE---E---ECSSEEEEEEE--C----S-SSS------CEEEEEEC---------CCCCTTCEEEEEEE
T ss_pred EEEEEEEEEEEEE---E---EcCCeEEEEEE--C----C-CCC------EEEEEEEccCCCcccccccccCCCEEEEEEE
Confidence 5788999988752 1 12345556653 2 1 451 4688888764322 2445999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEeEEEEccC
Q psy14498 82 LQTRKWTNKEGVEKYITEVIADNMQMLGS 110 (171)
Q Consensus 82 l~~~~~~~kdG~~~~~~~i~a~~i~~l~~ 110 (171)
|+. |. |+ ..|.+..|..+..
T Consensus 92 l~~--f~---g~----~qi~~~~ir~v~d 111 (132)
T 3kdf_D 92 LRS--FQ---NK----KSLVAFKIMPLED 111 (132)
T ss_dssp EEE--ET---TE----EEEEEEEEEECSS
T ss_pred EEe--EC---CE----EEEEEEEEEEcCC
Confidence 986 53 32 3477777777653
No 48
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=87.46 E-value=4.5 Score=30.62 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=52.5
Q ss_pred ccEEEEEEEeCCCCeEEEecCC--cEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHH---cCCCCEEEE
Q psy14498 4 VNKVIIIGNLGRDPETRYMSNG--DAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQY---LKKGSQIYI 78 (171)
Q Consensus 4 ~N~v~l~G~l~~dp~~~~~~~g--~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~---l~kG~~V~V 78 (171)
+++|-|+|.|...-+.-...+| ..++.|+ +++. +|. ...+.|.+--.......-- ..-|..|.|
T Consensus 85 I~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~--IDDs-----SG~----~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~V 153 (220)
T 3kf8_A 85 VNQINIFGKIVYEQYKEKEFNGVEESYVILV--ISDF-----IGI----DSKIRVRLSQEQFKEVGLTLDKKNYGKIVEL 153 (220)
T ss_dssp ECEEEEEEEEEEEEEECCBCSSCBCCEEEEE--EECC-----CSS----SCEEEEEEEHHHHHTTTCCTTSCCTTCEEEE
T ss_pred cEEEEEEEEEEEEEEEeccccccccceEEEE--EeCC-----CCC----CceEEEEecHHHhhccCccccccCCCeEEEE
Confidence 6789999999974322111112 2333333 3332 353 3455666554422111111 236999999
Q ss_pred EeEeeeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 79 EGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 79 ~G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
+|.+.+..=. -+...++.-+|.|++|.+|+..
T Consensus 154 kG~i~~~r~~-~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 154 EGEIYNWYDS-INVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp EEEEEECCCS-TTTTSCCCEEEEEEEEEEEESS
T ss_pred EEEEEeeccc-cccccccceEEEEEEEEEeccC
Confidence 9999864211 1112223338999999999765
No 49
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=86.17 E-value=2.6 Score=31.83 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=43.0
Q ss_pred EEEEEEEeCCCCeEEEe--c-CCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEe
Q psy14498 6 KVIIIGNLGRDPETRYM--S-NGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRL 82 (171)
Q Consensus 6 ~v~l~G~l~~dp~~~~~--~-~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l 82 (171)
.|-++|.|..--+++.. . +|+......+.+... +| .-++|++||+.|+.+. ...|+.|.+.|-
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~-----sg------~~i~~tLWg~~a~~~~--~~~~~vv~i~~~- 205 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDT-----SG------KVVTATLWGEDADKFD--GSRQPVLAIKGA- 205 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECT-----TC------CEEEEEEEHHHHHHCC--CTTCCEEEEEEE-
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECC-----CC------CEEEEEEEchhhhhcc--cCCCCEEEEEEE-
Confidence 46788888765444332 2 566655555555431 22 2589999999998754 578888877763
Q ss_pred eeeee
Q psy14498 83 QTRKW 87 (171)
Q Consensus 83 ~~~~~ 87 (171)
+...|
T Consensus 206 ~v~~f 210 (246)
T 1jmc_A 206 RVSDF 210 (246)
T ss_dssp EEECT
T ss_pred EEEec
Confidence 33445
No 50
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=85.87 E-value=8.8 Score=32.67 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=49.9
Q ss_pred EEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHH------HHHHHHHcCCCCEEEEE
Q psy14498 6 KVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL------AQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 6 ~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~------A~~~~~~l~kG~~V~V~ 79 (171)
.|+|.|+|.+ +|.. |+.++-+.| -+. +..+.|++-.+. -+.+.+.|..||.|.|+
T Consensus 57 ~V~v~Grv~~---~R~~--gkk~~F~~L-rD~-------------sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~ 117 (521)
T 3bju_A 57 TLKVAGRIHA---KRAS--GGKLIFYDL-RGE-------------GVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQ 117 (521)
T ss_dssp CEEEEEEEEE---EEES--SSSEEEEEE-EET-------------TEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEE
T ss_pred EEEEEEEEEE---EecC--CCCcEEEEE-EEC-------------CEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEE
Confidence 4888888874 3333 422332333 221 235777776432 12233569999999999
Q ss_pred eEeeeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 80 GRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 80 G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
|.+..+. .| .++|.|.+|.+|...
T Consensus 118 G~v~~t~----~g----e~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 118 GNPGKTK----KG----ELSIIPYEITLLSPC 141 (521)
T ss_dssp EEEEECT----TC----CEEEEEEEEEEEECC
T ss_pred EEEEecC----CC----CEEEEEeEEEEeecC
Confidence 9987663 34 379999999999743
No 51
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=85.52 E-value=2.3 Score=33.06 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=41.0
Q ss_pred ceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEeeeeeeecCCCcEEEEEEEEEeEEEEccC
Q psy14498 51 TEWHRITFYRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGS 110 (171)
Q Consensus 51 ~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~ 110 (171)
+..+.|++.+++.+. ++.||+|.|.|-++... +.+...+.+.|.|.+|+.+..
T Consensus 197 Prsi~V~l~~dLvd~----~~PGDrV~vtGI~~~~~---~~~~~~~~~~l~a~~I~~~~~ 249 (279)
T 1ltl_A 197 PRQITVVLEDDLVDT----LTPGDIVRVTGTLRTVR---DERTKRFKNFIYGNYTEFLEQ 249 (279)
T ss_dssp CCEEEEEEEGGGTTC----CCTTCEEEEEEEEEEEE---ETTTTEEEEEEEEEECCBC--
T ss_pred CeEEEEEEcccccCc----cCCCCEEEEEEEEEEee---CCCCceEEEEEEEEEEEEecC
Confidence 678899999988764 89999999999988763 234457888889988887644
No 52
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=83.86 E-value=5.1 Score=31.00 Aligned_cols=78 Identities=10% Similarity=0.186 Sum_probs=45.7
Q ss_pred ccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHH--HHHHcCCCCEEEEEeE
Q psy14498 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQI--VKQYLKKGSQIYIEGR 81 (171)
Q Consensus 4 ~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~--~~~~l~kG~~V~V~G~ 81 (171)
++.|.|+|.|..- . .+..++.|+|. + . ||. -+.|.+|....+. -...++.|+.|.|.|+
T Consensus 71 i~~V~ivG~V~~i---~---~~~~~~~~~L~--D----~-TG~------~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~ 131 (270)
T 2pi2_A 71 ISQVTIVGIIRHA---E---KAPTNIVYKID--D----M-TAA------PMDVRQWVDTDDTSSENTVVPPETYVKVAGH 131 (270)
T ss_dssp ESEEEEEEEEEEE---E---ECSSEEEEEEE--C----S-SSS------CEEEEEECC-------CCCCCTTCEEEEEEE
T ss_pred EEEEEEEEEEEEE---E---eccceEEEEEE--C----C-CCC------EEEEEEEcCcCcccchhhcCCCCCEEEEEEE
Confidence 4567888877651 1 12345556552 1 1 341 4688889654321 2345999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEeEEEEcc
Q psy14498 82 LQTRKWTNKEGVEKYITEVIADNMQMLG 109 (171)
Q Consensus 82 l~~~~~~~kdG~~~~~~~i~a~~i~~l~ 109 (171)
|+. |. |+ ..|.+..|..+.
T Consensus 132 v~~--f~---g~----~qi~i~~ir~v~ 150 (270)
T 2pi2_A 132 LRS--FQ---NK----KSLVAFKIMPLE 150 (270)
T ss_dssp EEE--ET---TE----EEEEEEEEEECS
T ss_pred EEe--cC---Ce----eEEEEEEEEecC
Confidence 984 53 32 356666676654
No 53
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=83.60 E-value=10 Score=27.12 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=49.6
Q ss_pred ccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHH---HHHHHHHcCCCCEEEEEe
Q psy14498 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL---AQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 4 ~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~---A~~~~~~l~kG~~V~V~G 80 (171)
++.|.|+|.|..- +.. .. ...|+ +++. || ..+.|++|-+. +......+..|+.|.|.|
T Consensus 47 I~~V~IvGiVv~~---~~~-~~--~~~yt--IDD~-----TG------~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G 107 (159)
T 3kf6_A 47 IRWIQIVGYIAAI---DIY-EG--KHVLT--VDDC-----SG------MVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG 107 (159)
T ss_dssp ECEEEEEEEEEEE---EEE-TT--EEEEE--EECS-----SS------CEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEEEEEEEE---EEe-CC--EEEEE--EecC-----CC------CeEEEEEEccCCCCcccccccCCCCCEEEEEE
Confidence 4678888888862 222 11 22233 2221 33 36899999764 223333488999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 81 RLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
+|++. . | .-+|.|.+|..+...
T Consensus 108 ~v~~f--r---~----~rqI~~~~i~~v~d~ 129 (159)
T 3kf6_A 108 KINSF--R---S----EVELIAQSFEELRDP 129 (159)
T ss_dssp EEECS--S---S----SCEEEEEEEEEECST
T ss_pred EEEee--C---C----EEEEEEEEEEECCCc
Confidence 99753 2 2 126888888888653
No 54
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=81.25 E-value=1.1 Score=33.49 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=39.4
Q ss_pred EEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEe
Q psy14498 6 KVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 6 ~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G 80 (171)
..+++|-|.+.-+.|.+.+|+.++.+.|.-=. + ....+.+.+||+..+... .+..|+.|.|--
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~---~--------~~~~V~lfLFg~a~~~~~-k~~~G~ViaiLN 119 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLK---D--------LDKYISLFLFGDVHKEHW-KTDQGTVIGLLN 119 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSS---S--------TTCCEEEEECHHHHHHHT-TCCTTEEEEEES
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecC---C--------CCcEEEEEEechHHHHhc-CcCCceEEEEEC
Confidence 46778888887777778888877766664211 1 124689999999776644 499999998865
No 55
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=80.75 E-value=7.8 Score=32.16 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=49.3
Q ss_pred cEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHH--HHHHHcCCCCEEEEEeEe
Q psy14498 5 NKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQ--IVKQYLKKGSQIYIEGRL 82 (171)
Q Consensus 5 N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~--~~~~~l~kG~~V~V~G~l 82 (171)
..|+|.|+|.+ +|.. |+.++-+.| -++ +..+.|++-.+..+ ... .|..|+.|.|+|.+
T Consensus 12 ~~V~v~Gwv~~---~R~~--Gk~~~Fi~L-rD~-------------~g~iQvv~~~~~~~~~~~~-~l~~~~~v~v~G~v 71 (435)
T 2xgt_A 12 ERVCIKGWIHR---MRRQ--GKSLMFFIL-RDG-------------TGFLQVLLMDKLCQTYDAL-TVNTECTVEIYGAI 71 (435)
T ss_dssp SEEEEEEEEEE---EEEC--TTSEEEEEE-ECS-------------SCEEEEEEEGGGGSSHHHH-HCCTTCEEEEEEEE
T ss_pred CEEEEEEEEEE---eccc--CCCcEEEEE-EEC-------------CceEEEEECCcchhHHHHh-cCCCCCEEEEEEEE
Confidence 36889999874 4433 333443333 211 22477777544321 112 59999999999999
Q ss_pred eeeeeecCCCc-EEEEEEEEEeEEEEccC
Q psy14498 83 QTRKWTNKEGV-EKYITEVIADNMQMLGS 110 (171)
Q Consensus 83 ~~~~~~~kdG~-~~~~~~i~a~~i~~l~~ 110 (171)
..+. .|. ..-.+||.|++|.+|..
T Consensus 72 ~~~~----~~~~~~g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 72 KEVP----EGKEAPNGHELIADFWKIIGN 96 (435)
T ss_dssp EECC----------TTEEEEEEEEEEEEC
T ss_pred EecC----CCcCCCCcEEEEEEEEEEeec
Confidence 8753 221 12247999999999975
No 56
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=78.64 E-value=1.8 Score=30.63 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=46.1
Q ss_pred ccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccC---------CCCeeee--eceEEEEEEEhHHHHHHHHHcCC
Q psy14498 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDK---------NSGEKRE--LTEWHRITFYRKLAQIVKQYLKK 72 (171)
Q Consensus 4 ~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~---------~~G~~~~--~~~~~~v~~~g~~A~~~~~~l~k 72 (171)
...+-|+|.|.+.+ +. ++ .++|.+.+.-.+. +.+.|.. ...-++|.+|+.-|..+.+.|+.
T Consensus 14 ~~F~Dl~~qVv~~~---~~-~~----~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~ar~~lk~ 85 (143)
T 4hik_A 14 HQRCSFYAQVIKTW---YS-DK----NFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRNYIKE 85 (143)
T ss_dssp SCEEEEEEEEEEEE---EC-SS----CEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHHHHTTTCCT
T ss_pred CCeEEEEEEEEEEE---cC-CC----eEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHHHHHHhhCCC
Confidence 34577888888733 22 23 4666666542221 1113322 12357999999999999999999
Q ss_pred CCEEEEEe-Eeee
Q psy14498 73 GSQIYIEG-RLQT 84 (171)
Q Consensus 73 G~~V~V~G-~l~~ 84 (171)
|+.|.+.= +++.
T Consensus 86 Gd~v~L~Nv~iK~ 98 (143)
T 4hik_A 86 GDYVVMKNVRTKI 98 (143)
T ss_dssp TCEEEEEEEEEEE
T ss_pred CCEEEEEeEEEee
Confidence 99999753 4443
No 57
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=78.55 E-value=23 Score=29.95 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=50.1
Q ss_pred EEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhH-H----HHHHHHHcCCCCEEEEEe
Q psy14498 6 KVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK-L----AQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 6 ~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~-~----A~~~~~~l~kG~~V~V~G 80 (171)
.|+|.|+|.+ +|.. |+ ++ |...-+. +..+.|++-.+ + -+...+.|..|+.|.|+|
T Consensus 66 ~V~v~Gwv~~---~R~~--gk-~~-F~~LrD~-------------sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G 125 (504)
T 1e1o_A 66 EVSVAGRMMT---RRIM--GK-AS-FVTLQDV-------------GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARG 125 (504)
T ss_dssp EEEEEEEEEE---EEEE--TT-EE-EEEEEET-------------TEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEE
T ss_pred EEEEEEEEEE---EecC--CC-cE-EEEEEEC-------------CeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEE
Confidence 6899999875 4443 33 32 3332221 23577777543 1 111235699999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 81 RLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
.+..+ +.| .++|.|++|.+|...
T Consensus 126 ~v~~~----~~g----e~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 126 TLFKT----QTG----ELSIHCTELRLLTKA 148 (504)
T ss_dssp EEEEC----TTC----CEEEEEEEEEEEECC
T ss_pred EEEec----CCc----eEEEEEEEEEEeccc
Confidence 99865 335 478999999999743
No 58
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=76.90 E-value=26 Score=29.93 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=49.4
Q ss_pred EEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHH-H-H--HHHHHcCCCCEEEEEeE
Q psy14498 6 KVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL-A-Q--IVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 6 ~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~-A-~--~~~~~l~kG~~V~V~G~ 81 (171)
.|+|.|+|-+ +|.. |+ ++ |...-+. +--+.|++-.+. . + ...+.|..||.|.|+|.
T Consensus 88 ~V~v~GwV~~---~R~~--Gk-~~-Fi~LrD~-------------sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~ 147 (529)
T 4ex5_A 88 EVAIAGRMML---KRVM--GK-AS-FATVQDG-------------SGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGV 147 (529)
T ss_dssp EEEEEEEEEE---EEEE--TT-EE-EEEEECS-------------SCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEE
T ss_pred EEEEEEEEEe---eecC--CC-eE-EEEEEeC-------------CeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEE
Confidence 5889999875 4443 43 33 3322211 225677765432 1 1 22345999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 82 LQTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 82 l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
+... +.| .++|.|++|.+|...
T Consensus 148 v~~t----~~g----elel~~~~i~vLs~a 169 (529)
T 4ex5_A 148 LFRT----NKG----ELSVKCTQLRLLAKA 169 (529)
T ss_dssp EEEC----TTS----CEEEEEEEEEEEECC
T ss_pred EEEc----CCC----cEEEEEEEEEEEecC
Confidence 9753 345 478999999999653
No 59
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=76.47 E-value=28 Score=28.68 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=48.7
Q ss_pred cEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcC-CCCEEEEEeEee
Q psy14498 5 NKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLK-KGSQIYIEGRLQ 83 (171)
Q Consensus 5 N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~-kG~~V~V~G~l~ 83 (171)
..|+|.|+|.+ +|.. |+ ++ |-..-+. +..+.|++-. +.|. .|+.|.|+|.+.
T Consensus 14 ~~V~v~Gwv~~---~R~~--g~-~~-F~~lrD~-------------~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~ 66 (422)
T 1n9w_A 14 QEVELLGFLHW---RRDL--GR-IQ-FLLLRDR-------------SGVVQVVTGG-------LKLPLPESALRVRGLVV 66 (422)
T ss_dssp SEEEEEEEEEE---EEEC--SS-EE-EEEEEET-------------TEEEEEEEES-------CCCCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEE---EecC--CC-eE-EEEEEEC-------------CEEEEEEEEc-------cccCCCCCEEEEEEEEE
Confidence 36888999875 4443 43 33 3332221 2236777643 5699 999999999998
Q ss_pred eeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 84 TRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 84 ~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
.+.- ..| .+||.|++|.+|...
T Consensus 67 ~~~~--~~~----~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 67 ENAK--APG----GLEVQAKEVEVLSPA 88 (422)
T ss_dssp ECTT--STT----SEEEEEEEEEEEECC
T ss_pred ecCC--CCc----cEEEEEeEEEEeccC
Confidence 7642 122 479999999999743
No 60
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=76.42 E-value=19 Score=30.01 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=36.6
Q ss_pred EEEEEEEh-HHHH-HHHHHcCCCCEEEEEeEeeeeeeecCCC--cEEEEEEEEEeEEEEccCC
Q psy14498 53 WHRITFYR-KLAQ-IVKQYLKKGSQIYIEGRLQTRKWTNKEG--VEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 53 ~~~v~~~g-~~A~-~~~~~l~kG~~V~V~G~l~~~~~~~kdG--~~~~~~~i~a~~i~~l~~~ 111 (171)
.+.|++-. ++.+ .....|..|+.|.|+|.+..+.-...+- .+.-.+||.|++|++|...
T Consensus 60 ~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a 122 (456)
T 3m4p_A 60 YCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGES 122 (456)
T ss_dssp EEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECC
T ss_pred cEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecC
Confidence 47787765 2221 1133599999999999997653211110 0002468999999999753
No 61
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=75.45 E-value=15 Score=24.23 Aligned_cols=61 Identities=8% Similarity=0.051 Sum_probs=37.0
Q ss_pred ccEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEE-eEe
Q psy14498 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIE-GRL 82 (171)
Q Consensus 4 ~N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~-G~l 82 (171)
...|.|+|+|... ....++..+..+.|+ |. || -+++++|++. ....|..|+.|.|. |..
T Consensus 15 ~~~v~v~~~V~~~---~~~~~~~~~~~~~l~------De-TG-------~I~~t~W~~~---~~~~~~~G~~V~i~n~~v 74 (109)
T 2kbn_A 15 GQWANLKAKVIQL---WENTHESISQVGLLG------DE-TG-------IIKFTIWKNA---ELPLLEQGESYLLRSVVV 74 (109)
T ss_dssp TCEEEEEEEEEEE---EECCCSSEEEEEEEE------CT-TC-------CEEEEEEGGG---CCCCCCTTCEEEEEEEEE
T ss_pred CCcEEEEEEEEEe---EcCCCCeEEEEEEEE------CC-CC-------eEEEEEECcc---cccccCCCCEEEEEEEEE
Confidence 4567888888753 223344443332221 11 34 5799999943 12459999999999 676
Q ss_pred ee
Q psy14498 83 QT 84 (171)
Q Consensus 83 ~~ 84 (171)
+.
T Consensus 75 ~~ 76 (109)
T 2kbn_A 75 GE 76 (109)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 62
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=74.83 E-value=26 Score=28.94 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=50.2
Q ss_pred cEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhH--HHHHHHHHcCCCCEEEEEeEe
Q psy14498 5 NKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK--LAQIVKQYLKKGSQIYIEGRL 82 (171)
Q Consensus 5 N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~--~A~~~~~~l~kG~~V~V~G~l 82 (171)
..|+|.|+|.+ +|.. |+ ++ |-..-+. +..+.|++-.+ ..+. .+.|..|+.|.|+|.+
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~-F~~lrD~-------------~g~iQ~v~~~~~~~~~~-~~~l~~~~~v~v~G~v 75 (429)
T 1wyd_A 17 KEVIWAGWVHL---LRDL--GG-KK-FIILRDK-------------TGLGQVVVDKNSSAFGI-SQELTQESVIQVRGIV 75 (429)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EE-EEEEEET-------------TEEEEEEECTTSTTHHH-HTTCCTTCEEEEEEEE
T ss_pred CEEEEEEEEEE---EecC--CC-eE-EEEEEEC-------------CeeEEEEEeCChHHHHH-HHhCCCCCEEEEEEEE
Confidence 35788888875 4443 33 33 3332221 23477777543 2222 3569999999999999
Q ss_pred eeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 83 QTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 83 ~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
..+.- ..| .+||.|++|.+|...
T Consensus 76 ~~~~~--~~~----~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 76 KADKR--APR----GIELHAEEITLLSKA 98 (429)
T ss_dssp EECSS--SGG----GEEEEEEEEEEEECC
T ss_pred EecCC--CCc----cEEEEEeEEEEeccC
Confidence 87642 112 479999999999744
No 63
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=74.15 E-value=4.7 Score=33.36 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=42.0
Q ss_pred EEEEEEeCCCCeEEEe--c-CCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHH--HcCCCCEEEEEeE
Q psy14498 7 VIIIGNLGRDPETRYM--S-NGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQ--YLKKGSQIYIEGR 81 (171)
Q Consensus 7 v~l~G~l~~dp~~~~~--~-~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~--~l~kG~~V~V~G~ 81 (171)
|-++|.|..-=+++.. . +|+...+..|.+.+. +| .-++|++||+.|+.+.. .+..|..|.|.|-
T Consensus 136 vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~-----sg------~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~ 204 (444)
T 4gop_C 136 CDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQ-----GN------RSVKLTLWGKTAETFPTNAGVDEKPVLAFKGV 204 (444)
T ss_dssp CBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECT-----TC------BEEEEEEEHHHHHTSTTSTTSSSCCEEEEESC
T ss_pred eEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeC-----CC------CEEEEEEEhhhhhhhhhhhccCCCCEEEEEeE
Confidence 4567777665444433 2 466555555554321 22 26899999999987552 2677898888873
Q ss_pred eeeeee
Q psy14498 82 LQTRKW 87 (171)
Q Consensus 82 l~~~~~ 87 (171)
+...|
T Consensus 205 -kV~~f 209 (444)
T 4gop_C 205 -KVGDF 209 (444)
T ss_dssp -EEECT
T ss_pred -EEeec
Confidence 23346
No 64
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=73.87 E-value=37 Score=28.07 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=50.2
Q ss_pred cEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHH--H--HHHHHcCCCCEEEEEe
Q psy14498 5 NKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLA--Q--IVKQYLKKGSQIYIEG 80 (171)
Q Consensus 5 N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A--~--~~~~~l~kG~~V~V~G 80 (171)
..|+|.|+|.+ +|.. |+ ++ |-..-+ .+..+.|++-.+.. + ...+.|..|+.|.|+|
T Consensus 17 ~~V~v~G~v~~---~R~~--g~-~~-F~~lrD-------------~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G 76 (434)
T 1x54_A 17 KKVRLAGWVYT---NMRV--GK-KI-FLWIRD-------------STGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEG 76 (434)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EE-EEEEEE-------------TTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEEEEEE---EecC--CC-eE-EEEEEE-------------CCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEE
Confidence 35788888875 4443 33 33 333222 13347888754321 1 2235699999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEeEEEEccC
Q psy14498 81 RLQTRKWTNKEGVEKYITEVIADNMQMLGS 110 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~ 110 (171)
.+..+.- ..| .+||.|++|.+|..
T Consensus 77 ~v~~~~~--~~~----~~el~~~~~~vl~~ 100 (434)
T 1x54_A 77 IVKADER--APG----GAEVHVEKLEVIQA 100 (434)
T ss_dssp EEEECTT--SGG----GEEEEEEEEEEEEC
T ss_pred EEEecCC--CCc----cEEEEEeEEEEeec
Confidence 9987642 112 47999999999974
No 65
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=73.72 E-value=6.7 Score=27.63 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=21.8
Q ss_pred ceEEEEEEEhHHHHHHHHHcCCCCEEEEEeE
Q psy14498 51 TEWHRITFYRKLAQIVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 51 ~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~ 81 (171)
|=-+++++|++.++. |+.|+.|.|.+-
T Consensus 72 TG~I~ftlW~e~~~~----l~~Gd~v~i~na 98 (145)
T 1wjj_A 72 TGCILFTARNDQVDL----MKPGATVILRNS 98 (145)
T ss_dssp SCEEEEEECTTHHHH----TCTTCEEEEEEE
T ss_pred CcEEEEEEecCCcCc----CCCCCEEEEecc
Confidence 445799999987654 889999999874
No 66
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=71.36 E-value=20 Score=23.91 Aligned_cols=33 Identities=12% Similarity=0.387 Sum_probs=24.9
Q ss_pred HHcCCCCEEEEEeEeeeeeeecCCCcEEEEEEEEEeEEEEcc
Q psy14498 68 QYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLG 109 (171)
Q Consensus 68 ~~l~kG~~V~V~G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~ 109 (171)
..+..+++|.|.|++. ..|. .++|-|.+|++|.
T Consensus 76 ~~v~p~~~Vri~GevD-kd~~--------~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 76 VTVTPKDTVEIQGEVD-KDWN--------SVEIDVKQIRKVN 108 (109)
T ss_dssp CCCCTTSCEEEEEEEE-EETT--------EEEEEEEEEEEC-
T ss_pred cccCCCCEEEEEEEEC-CCCC--------ceEEEEEEEEEcc
Confidence 3489999999999997 2342 3588899998874
No 67
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=71.25 E-value=22 Score=29.96 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=50.9
Q ss_pred EEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhH-HHH---HHHHHcCCCCEEEEEeE
Q psy14498 6 KVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK-LAQ---IVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 6 ~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~-~A~---~~~~~l~kG~~V~V~G~ 81 (171)
.|+|.|+|.+ +|.. |+ ++ |...-+. +..+.|++-.+ +.+ ...+.|..|+.|.|+|.
T Consensus 58 ~V~v~Gwv~~---~R~~--gk-~~-F~~LrD~-------------sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~ 117 (493)
T 3a74_A 58 EVAVAGRIMT---KRGM--GK-AG-FAHIQDV-------------TGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGT 117 (493)
T ss_dssp EEEEEEEEEE---EEEE--TT-EE-EEEEEET-------------TEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEE
T ss_pred EEEEEEEEEE---EecC--CC-cE-EEEEEEC-------------CEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEE
Confidence 6889999875 4443 33 33 3332221 23578887644 222 12356999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 82 LQTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 82 l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
+..+ +.| .++|.|++|.+|...
T Consensus 118 v~~~----~~g----e~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 118 MFKT----KVG----ELSIKVSSYEFLTKA 139 (493)
T ss_dssp EEEC----TTC----CEEEEEEEEEEEECC
T ss_pred EEeC----CCC----cEEEEEEEEEEcccc
Confidence 9865 335 479999999999743
No 68
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=69.18 E-value=11 Score=32.41 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=39.5
Q ss_pred ceEEEEEEEh-----HHHHHHHHHcCCCCEEEEEeEeeeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 51 TEWHRITFYR-----KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 51 ~~~~~v~~~g-----~~A~~~~~~l~kG~~V~V~G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
+..+.|++-. +..-...+.|..|+.|.|+|.+..+.-.. .+.+.-.+||.|++|.+|...
T Consensus 89 ~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~-~~~~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 89 IYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPI-EKATQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp TEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCC-TTSSSCSEEEEEEEEEEEECC
T ss_pred CeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCccc-ccCCCCcEEEEEeEEEEEecC
Confidence 3367777764 11122345699999999999998764211 122234589999999999754
No 69
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=65.63 E-value=25 Score=29.13 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=50.6
Q ss_pred cEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHH--HH--HHHHHcCCCCEEEEEe
Q psy14498 5 NKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL--AQ--IVKQYLKKGSQIYIEG 80 (171)
Q Consensus 5 N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~--A~--~~~~~l~kG~~V~V~G 80 (171)
..|+|.|+|-+ +|.. |+ ++-+.| -+ | +..+.|++-.+. .+ ...+.|..|+.|.|+|
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~Fi~L-rD--------~-----~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G 76 (438)
T 3nem_A 17 QKVKVAGWVWE---VKDL--GG-IKFLWI-RD--------R-----DGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEG 76 (438)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEE-EE--------T-----TEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEE
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEE-EE--------C-----CeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEE
Confidence 36888888875 4433 32 332233 11 1 234777776442 11 2234599999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEeEEEEccCC
Q psy14498 81 RLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 81 ~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
.+..+.- ..| .+||.|++|.+|...
T Consensus 77 ~v~~~~~--~~~----~~el~~~~i~vl~~~ 101 (438)
T 3nem_A 77 VVNFTPK--AKL----GFEILPEKIVVLNRA 101 (438)
T ss_dssp EEEECTT--STT----SEEEEEEEEEEEECB
T ss_pred EEEeCCC--CCC----cEEEEEEEEEEEecC
Confidence 9986532 223 378999999999754
No 70
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=64.26 E-value=7.7 Score=33.51 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=37.4
Q ss_pred EEEEEEEhHH-HHHHHHHcCCCCEEEEEeEeeeeeeecCCCc-EEEEEEEEEeEEEEccCC
Q psy14498 53 WHRITFYRKL-AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGV-EKYITEVIADNMQMLGSR 111 (171)
Q Consensus 53 ~~~v~~~g~~-A~~~~~~l~kG~~V~V~G~l~~~~~~~kdG~-~~~~~~i~a~~i~~l~~~ 111 (171)
.+.|++-.+. .-...+.|..|+.|.|+|.+..+.- .+.. +.-.+||.|++|.+|...
T Consensus 45 ~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~--~~~~~~~ge~Ei~~~~i~vl~~a 103 (580)
T 1l0w_A 45 LVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPE--PNPRLATGRVEVELSALEVLAEA 103 (580)
T ss_dssp EEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSS--CCTTSTTTTEEEEEEEEEEEECC
T ss_pred eEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCC--cCccCCCccEEEEEeEEEEeccC
Confidence 4677765432 1122356999999999999988751 2211 112479999999999753
No 71
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=62.03 E-value=16 Score=31.54 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=37.7
Q ss_pred EEEEEEEhHHHH--HHHHHcCCCCEEEEEeEeeeeeeec-----CCCcEEEEEEEEEeEEEEccCC
Q psy14498 53 WHRITFYRKLAQ--IVKQYLKKGSQIYIEGRLQTRKWTN-----KEGVEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 53 ~~~v~~~g~~A~--~~~~~l~kG~~V~V~G~l~~~~~~~-----kdG~~~~~~~i~a~~i~~l~~~ 111 (171)
.+.|++-.+..+ ...+.|..|+.|.|+|.+..+.-.. +.| .+||.|++|.+|...
T Consensus 44 ~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~g----eiEl~~~~i~vl~~a 105 (585)
T 1c0a_A 44 IVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATG----EIEVLASSLTIINRA 105 (585)
T ss_dssp EEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTT----TEEEEEEEEEEEECC
T ss_pred eEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCc----cEEEEEeEEEEEecc
Confidence 477777544322 2235699999999999998763211 223 379999999999753
No 72
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=58.93 E-value=18 Score=25.65 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=27.0
Q ss_pred CEEEEEeEeeeeeeecCCCcEEEEEEEEEeEEEEcc
Q psy14498 74 SQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLG 109 (171)
Q Consensus 74 ~~V~V~G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~ 109 (171)
+.|+|+|+|+...+++ +--...+.+.+..|+...
T Consensus 113 ~pvwV~G~L~~~~~~~--~l~~~~Y~m~a~~i~~y~ 146 (150)
T 4hsp_A 113 QPFWVEGTFKVENASS--ELAAAGYRMQASKVTPYE 146 (150)
T ss_dssp SCEEEEEEEECCCEEC--SSCEESEEEEEEEEEECC
T ss_pred ceEEEEEEEEEeeecc--cceeEEeEEeeeEEEEec
Confidence 7899999999999874 344566778888887764
No 73
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=55.23 E-value=17 Score=31.68 Aligned_cols=59 Identities=8% Similarity=0.032 Sum_probs=36.5
Q ss_pred EEEEEEEhHH----HHHHHHHcCCCCEEEEEeEeeeeeeecCCCcE-EEEEEEEEeEEEEccCC
Q psy14498 53 WHRITFYRKL----AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVE-KYITEVIADNMQMLGSR 111 (171)
Q Consensus 53 ~~~v~~~g~~----A~~~~~~l~kG~~V~V~G~l~~~~~~~kdG~~-~~~~~i~a~~i~~l~~~ 111 (171)
.+.|++-.+. +-...+.|..|+.|.|+|.+..+.-...+.+. .-.+||.|++|++|...
T Consensus 50 ~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a 113 (617)
T 4ah6_A 50 LVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNAC 113 (617)
T ss_dssp EEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECB
T ss_pred CEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecC
Confidence 4566654321 22344569999999999999875321111110 11378999999999654
No 74
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=52.46 E-value=52 Score=22.34 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCCCEEEEEeEeeeeeeecCCCcEEEEEEEEEeEEEEccC
Q psy14498 62 LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGS 110 (171)
Q Consensus 62 ~A~~~~~~l~kG~~V~V~G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~~ 110 (171)
+.+.+.+++ -+++.+.|.|.+.++-|. .+.+++.+++|-..
T Consensus 47 i~~aL~~~v--ksk~sfKG~L~tYrfcDn------VWtfilkd~~fk~~ 87 (121)
T 1nh2_D 47 VAETLKDNT--QSKLTVKGNLDTYGFCDD------VWTFIVKNCQVTVE 87 (121)
T ss_dssp HHHHHHHSC--CCEEEEEEEEEEEEEETT------EEEEEEEEEEEEEE
T ss_pred HHHHHHHHh--ccCCeEEeeeccccccCc------EEEEEEeceEEEec
Confidence 444455443 477999999999988753 77888888887643
No 75
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=52.11 E-value=49 Score=21.96 Aligned_cols=40 Identities=10% Similarity=0.322 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCCEEEEEeEeeeeeeecCCCcEEEEEEEEEeEEEEcc
Q psy14498 62 LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLG 109 (171)
Q Consensus 62 ~A~~~~~~l~kG~~V~V~G~l~~~~~~~kdG~~~~~~~i~a~~i~~l~ 109 (171)
..+.+.+++ -+++.+.|+|.+.++-|. .+.+++.+++|-.
T Consensus 43 i~~aL~~~v--ksk~sfKG~L~tYrfcDn------VWTf~lkd~~fk~ 82 (108)
T 1nvp_D 43 INAALAQRV--RNRVNFRGSLNTYRFCDN------VWTFVLNDVEFRE 82 (108)
T ss_dssp HHHHHHHTC--CCEEEEEEEEEEEEEETT------EEEEEEEEEEEEC
T ss_pred HHHHHHHHh--ccCCeEeeccCCccccCc------EEEEEEeceEEEe
Confidence 444455543 477999999999888752 6667777666653
No 76
>2ko4_B General control protein GCN4; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_B
Probab=47.22 E-value=6.4 Score=20.43 Aligned_cols=6 Identities=50% Similarity=1.110 Sum_probs=5.2
Q ss_pred CCCCCC
Q psy14498 165 ADDDVP 170 (171)
Q Consensus 165 ~dDdiP 170 (171)
||||||
T Consensus 24 FDdDIp 29 (34)
T 2ko4_B 24 FDNDIP 29 (34)
T ss_dssp TSCCCS
T ss_pred ccCCcc
Confidence 699998
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=45.51 E-value=30 Score=29.74 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=43.1
Q ss_pred eceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEeeeeeeec-CCC-cEEEEEEEEEeEEEEccCC
Q psy14498 50 LTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRLQTRKWTN-KEG-VEKYITEVIADNMQMLGSR 111 (171)
Q Consensus 50 ~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~~~~~~~-kdG-~~~~~~~i~a~~i~~l~~~ 111 (171)
.+..+.|.+.+++.+. ++.||.|.|.|-+....... +.| ...+.+.|.+.+|..+...
T Consensus 203 ~pr~~~v~l~~dlv~~----~~pGd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~ 262 (595)
T 3f9v_A 203 LPRQLEIILEDDLVDS----ARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQKV 262 (595)
T ss_dssp CCCEEEEEEEGGGTTC----SCSSCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEEEEEECCCC
T ss_pred CCceEEEEEecccccc----cccCCEEEEEEEEEecccccccCCCcceEEEEEEEEeecccccc
Confidence 3778899999988764 89999999999998875531 223 3456677888888876543
No 78
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=43.78 E-value=23 Score=26.13 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCCCEEEEEeEeeeee
Q psy14498 61 KLAQIVKQYLKKGSQIYIEGRLQTRK 86 (171)
Q Consensus 61 ~~A~~~~~~l~kG~~V~V~G~l~~~~ 86 (171)
.+.+.-...|+.||.|+++|.|-+-+
T Consensus 22 Plt~e~v~~L~vGD~V~LsG~i~taR 47 (192)
T 2isb_A 22 PLVKDQILKLKVGDVVYITGEIFTAR 47 (192)
T ss_dssp SCCHHHHHHCCTTCEEEEEEEEEECC
T ss_pred CCCHHHHhhCCCCCEEEEEEEEEEEh
Confidence 33334444599999999999997643
No 79
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=42.40 E-value=55 Score=21.20 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=19.3
Q ss_pred HcCCCCEEEEEeEeeee----eeecCCCc
Q psy14498 69 YLKKGSQIYIEGRLQTR----KWTNKEGV 93 (171)
Q Consensus 69 ~l~kG~~V~V~G~l~~~----~~~~kdG~ 93 (171)
.|..|+.|.|.|.+..- .|+.++|.
T Consensus 12 ~L~~g~~v~i~~~V~~~~~~~~~~~k~G~ 40 (115)
T 2k50_A 12 KLEEGAETPVTGRVMKISSPRTFTTRKGR 40 (115)
T ss_dssp TCCTTCEEEEEEEEEEECCCEECCCTTSS
T ss_pred HCCCCCEeEEEEEEEECCCceEEEcCCCC
Confidence 37889999999987765 55677884
No 80
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=40.89 E-value=12 Score=26.28 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.3
Q ss_pred EhHHHHHHHHHcCCCCEEEEEe
Q psy14498 59 YRKLAQIVKQYLKKGSQIYIEG 80 (171)
Q Consensus 59 ~g~~A~~~~~~l~kG~~V~V~G 80 (171)
.|.+|..++..|.-||.|.|--
T Consensus 11 LGRLAs~vAk~L~~Gd~VVViN 32 (142)
T 1j3a_A 11 LGRLASRVAKMLLEGEEVVIVN 32 (142)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEC
T ss_pred hHHHHHHHHHHHhcCCEEEEEe
Confidence 4889999999999999998863
No 81
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=40.23 E-value=12 Score=26.32 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.2
Q ss_pred EhHHHHHHHHHcCCCCEEEEE
Q psy14498 59 YRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 59 ~g~~A~~~~~~l~kG~~V~V~ 79 (171)
.|.+|..++..|.-||.|.|-
T Consensus 19 LGRLAs~vAk~L~~Gd~VVVi 39 (145)
T 1vq8_J 19 MGRVASQVAEQALDGETVAVV 39 (145)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHhcCCEEEEE
Confidence 488999999999988888875
No 82
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=38.77 E-value=6.8 Score=31.90 Aligned_cols=6 Identities=33% Similarity=0.180 Sum_probs=2.8
Q ss_pred HHHHHH
Q psy14498 62 LAQIVK 67 (171)
Q Consensus 62 ~A~~~~ 67 (171)
.|..+.
T Consensus 275 ~A~~fl 280 (449)
T 3iot_A 275 LAKEFL 280 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 83
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=34.14 E-value=22 Score=31.73 Aligned_cols=61 Identities=15% Similarity=0.422 Sum_probs=38.5
Q ss_pred EEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCC--CCEEEEEeEee
Q psy14498 6 KVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKK--GSQIYIEGRLQ 83 (171)
Q Consensus 6 ~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~k--G~~V~V~G~l~ 83 (171)
.++|.|.|.+...++. .++.. +.+.+. |. +| .+.++.|+. .++.+.|+. |..|.|.|+++
T Consensus 167 ~~~~~~~v~~~~~~~~--~~~~~--~~~~~~----d~-~~-------~~~~~~f~~--~~~~~~~~~~~g~~~~~~G~~~ 228 (780)
T 1gm5_A 167 KVTTQGKIVSVETKKF--QNMNI--LTAVLS----DG-LV-------HVPLKWFNQ--DYLQTYLKQLTGKEVFVTGTVK 228 (780)
T ss_dssp CCEEEECCCCCEEEEC--SSCEE--EEEEEC----CS-SC-------CEEEEECSC--CTTHHHHHTTCSSCEEEEEEEC
T ss_pred EEEEEEEEEEEEeecC--CCCeE--EEEEEE----EC-Cc-------eEEEEEECc--HHHHhhCccCCCCEEEEEEEEE
Confidence 6889999988654432 23333 333332 21 23 356667763 245666888 99999999997
Q ss_pred e
Q psy14498 84 T 84 (171)
Q Consensus 84 ~ 84 (171)
.
T Consensus 229 ~ 229 (780)
T 1gm5_A 229 S 229 (780)
T ss_dssp S
T ss_pred E
Confidence 5
No 84
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=33.29 E-value=29 Score=24.18 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=17.5
Q ss_pred hHHHHHHHHHcCCCCEEEEEeE
Q psy14498 60 RKLAQIVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 60 g~~A~~~~~~l~kG~~V~V~G~ 81 (171)
....+.+.+.+++||.|+|.|.
T Consensus 126 ~eai~~~~~~~~~gDvVLv~Gs 147 (163)
T 3mvn_A 126 DELVMRIVQQAKPNDHILIMSN 147 (163)
T ss_dssp HHHHHHHHHHCCTTCEEEEECS
T ss_pred HHHHHHHHHhCCCCCEEEEECC
Confidence 3356677778999999999985
No 85
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=33.05 E-value=81 Score=24.29 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=26.8
Q ss_pred eEEEEEEEhHHHHHHHHHcCCCCEEEEEe-Eeeeee
Q psy14498 52 EWHRITFYRKLAQIVKQYLKKGSQIYIEG-RLQTRK 86 (171)
Q Consensus 52 ~~~~v~~~g~~A~~~~~~l~kG~~V~V~G-~l~~~~ 86 (171)
..+.|.+|+.-|..+ +.|+.|+.|.+.. +++.+.
T Consensus 211 lt~~V~~~d~h~~~~-~~lk~Gd~V~l~Nv~~k~~~ 245 (294)
T 1xjv_A 211 LTIDILVYDNHVHVA-RSLKVGSFLRIYSLHTKLQS 245 (294)
T ss_dssp GSEEEEEETTHHHHH-HHCCTTCEEEEEEEEEEEEE
T ss_pred eeEEEEEEcchhHHH-hcCCCCcEEEEeeeEEEecc
Confidence 358999999988655 4799999999987 555554
No 86
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=31.79 E-value=29 Score=24.43 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=21.9
Q ss_pred eEEEEEE----EhHHHHHHHHHcC------------CCCEEEEEe
Q psy14498 52 EWHRITF----YRKLAQIVKQYLK------------KGSQIYIEG 80 (171)
Q Consensus 52 ~~~~v~~----~g~~A~~~~~~l~------------kG~~V~V~G 80 (171)
.|+=|-+ .|++|..++..|. -||.|.|--
T Consensus 17 ~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViN 61 (148)
T 2ftc_H 17 IWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMN 61 (148)
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEe
Confidence 4554444 4789999999988 899888763
No 87
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=30.64 E-value=1.1e+02 Score=19.76 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=33.2
Q ss_pred EEEEEeCCCCeEEEecC--CcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHH-cCCCCEEEEE
Q psy14498 8 IIIGNLGRDPETRYMSN--GDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQY-LKKGSQIYIE 79 (171)
Q Consensus 8 ~l~G~l~~dp~~~~~~~--g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~-l~kG~~V~V~ 79 (171)
++.|.|.. .++....+ |.....++|.+.+ ++. ...+=.++++.+.+. +..||.|+|+
T Consensus 13 VyEGEV~e-i~~~~~~~~~~~~~~~itLkT~d-------~ek-------~l~lg~~i~e~L~kekV~~GDVI~Id 72 (95)
T 2cqa_A 13 IIEGEVVE-IQIDRPATGTGSKVGKLTLKTTE-------MET-------IYDLGTKMIESLTKDKVQAGDVITID 72 (95)
T ss_dssp EEEEEEEE-EEEECTTSSSSSCEEEEEEECSS-------SEE-------EEEECSHHHHHHHHTTCCTTSEEEEE
T ss_pred EEEEEEEE-EEEeecCCCCcceEEEEEEEecC-------CcE-------EEeCCHHHHHHHHHcCceeCCEEEEE
Confidence 45566553 22322322 3456677775442 332 233445688877755 9999999997
No 88
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=29.82 E-value=44 Score=20.29 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=13.7
Q ss_pred eEeeeeeeecCCCcEEEEEEE
Q psy14498 80 GRLQTRKWTNKEGVEKYITEV 100 (171)
Q Consensus 80 G~l~~~~~~~kdG~~~~~~~i 100 (171)
|.-+.|.|+|..|.-+-..++
T Consensus 1 ~p~k~RtWtDrtG~F~VeA~f 21 (68)
T 2hbp_A 1 GSKKSRLWVDRSGTFKVDAEF 21 (68)
T ss_dssp --CCSEEEEBSSSCCEEEEEE
T ss_pred CCccccEEEcCCCCeEEEEEE
Confidence 445789999999984444444
No 89
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=29.45 E-value=53 Score=25.38 Aligned_cols=70 Identities=11% Similarity=0.055 Sum_probs=43.8
Q ss_pred cEEEEEEEeCCCCeEEEecCCcEEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEeee
Q psy14498 5 NKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRLQT 84 (171)
Q Consensus 5 N~v~l~G~l~~dp~~~~~~~g~~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~~ 84 (171)
..|.|+|-|..--..+.+....-++.|+|.=.. + .-+.|.+|.+..+.+-.-++.||.|.+.. ++.
T Consensus 16 ~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S-~------------~gl~v~iF~~~~~~LP~v~~~GDII~l~~-vki 81 (294)
T 1xjv_A 16 TIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT-N------------VKLTCLLFSGNYEALPIIYKNGDIVRFHR-LKI 81 (294)
T ss_dssp EEEEEEEEEEEEEEEEECSSSSEEEEEEEECTT-C------------CEEEEEEEESSGGGSCCCCSTTCEEEEEE-EEE
T ss_pred CeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCC-C------------CCEEEEEECCChHHCCCCCCCCCEEEEEE-EEE
Confidence 468899999765444444333455666664321 1 12899999876656555459999998885 344
Q ss_pred eeee
Q psy14498 85 RKWT 88 (171)
Q Consensus 85 ~~~~ 88 (171)
+.|.
T Consensus 82 ~~~~ 85 (294)
T 1xjv_A 82 QVYK 85 (294)
T ss_dssp EEET
T ss_pred EEEC
Confidence 4663
No 90
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=27.91 E-value=28 Score=19.79 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=14.4
Q ss_pred CCCCEEEEEeEeeeeeee
Q psy14498 71 KKGSQIYIEGRLQTRKWT 88 (171)
Q Consensus 71 ~kG~~V~V~G~l~~~~~~ 88 (171)
..||.|.|+|.|.-.+.+
T Consensus 39 wdgdtvtvegqleggsle 56 (62)
T 2gjh_A 39 WDGDTVTVEGQLEGGSLE 56 (62)
T ss_dssp ECSSCEEEEEECCCCCCC
T ss_pred EcCCEEEEEeEEcCCccc
Confidence 359999999999876654
No 91
>3b21_A ORF169B, OSPI; bacterial protein, effector, type 3 secretion SYST unknown function; 2.01A {Shigella flexneri}
Probab=27.42 E-value=56 Score=22.96 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=24.2
Q ss_pred hHHHHHHHHHcCCCCEEEEEeEeeeeeeec--CCCcEEE
Q psy14498 60 RKLAQIVKQYLKKGSQIYIEGRLQTRKWTN--KEGVEKY 96 (171)
Q Consensus 60 g~~A~~~~~~l~kG~~V~V~G~l~~~~~~~--kdG~~~~ 96 (171)
.++|+.+.+...||+.|.|+=...+ .|.. .||++..
T Consensus 128 eriaenilqntskgsvvmisieqat-hwiagfndgekim 165 (220)
T 3b21_A 128 ERIAENILQNTSKGSVVMISIEQAT-HWIAGFNDGEKIM 165 (220)
T ss_dssp HHHHHHHHHHSCTTCEEEEEETTTT-EEEEEEECSSCEE
T ss_pred HHHHHHHHhccCCCcEEEEEhhhhh-hhhhccCCCceEE
Confidence 3489999999999999999754332 3442 2565433
No 92
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=27.16 E-value=32 Score=24.05 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=23.1
Q ss_pred ceEEEEEEE----hHHHHHHHHHcC------------CCCEEEEE
Q psy14498 51 TEWHRITFY----RKLAQIVKQYLK------------KGSQIYIE 79 (171)
Q Consensus 51 ~~~~~v~~~----g~~A~~~~~~l~------------kG~~V~V~ 79 (171)
-.|+=|-+- |.+|..++..|. -||.|.|.
T Consensus 13 r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVVi 57 (142)
T 3r8s_J 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVL 57 (142)
T ss_dssp CCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEE
T ss_pred CcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEE
Confidence 457766654 779999999988 89999885
No 93
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=26.98 E-value=26 Score=25.90 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.4
Q ss_pred EhHHHHHHHHHcCCCCEEEEE
Q psy14498 59 YRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 59 ~g~~A~~~~~~l~kG~~V~V~ 79 (171)
.|.+|..++..|.-||.|.|.
T Consensus 15 LGRLAs~VAk~L~~GD~VVVI 35 (198)
T 4a17_I 15 LGRLASYVAKELLSGQRIVVV 35 (198)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHhCCCEEEEE
Confidence 488999999999999988875
No 94
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=26.64 E-value=34 Score=23.86 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=22.9
Q ss_pred ceEEEEEE----EhHHHHHHHHHcC------------CCCEEEEE
Q psy14498 51 TEWHRITF----YRKLAQIVKQYLK------------KGSQIYIE 79 (171)
Q Consensus 51 ~~~~~v~~----~g~~A~~~~~~l~------------kG~~V~V~ 79 (171)
-.|+=|-+ .|.+|..++..|. -||.|.|.
T Consensus 11 r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVVi 55 (140)
T 3v2d_N 11 PRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVV 55 (140)
T ss_dssp CCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEE
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEE
Confidence 45666655 4789999999987 89999886
No 95
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=26.14 E-value=51 Score=21.04 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCCCEEEEEeEeeeeeee
Q psy14498 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWT 88 (171)
Q Consensus 61 ~~A~~~~~~l~kG~~V~V~G~l~~~~~~ 88 (171)
-.+..+.++|.+|++|-|.=+++-+.-.
T Consensus 18 ~K~k~a~~FL~~GdKVKvti~fRGRE~~ 45 (89)
T 1i96_V 18 TKLGHIKRFLQEGHKVKVTIMFRGREVA 45 (89)
T ss_pred HHHHHHHHHHHCCCEEEEEEEECCcccc
Confidence 3677888899999999999888877644
No 96
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=25.90 E-value=33 Score=25.40 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.3
Q ss_pred EhHHHHHHHHHcCCCCEEEEE
Q psy14498 59 YRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 59 ~g~~A~~~~~~l~kG~~V~V~ 79 (171)
.|.+|..++..|.-||.|.|.
T Consensus 16 LGRLAS~VAk~L~~Gd~VVVV 36 (199)
T 4b6a_O 16 LGRLASTIAKQLLNGQKIVVV 36 (199)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHhcCCCEEEEE
Confidence 588999999999888877664
No 97
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=25.65 E-value=24 Score=25.66 Aligned_cols=21 Identities=29% Similarity=0.448 Sum_probs=19.1
Q ss_pred EhHHHHHHHHHcCCCCEEEEE
Q psy14498 59 YRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 59 ~g~~A~~~~~~l~kG~~V~V~ 79 (171)
.|++|..++..|.-||.|.|.
T Consensus 10 LGRLAs~VAk~L~~GD~VVVI 30 (178)
T 3jyw_M 10 VGRLASVVAKQLLNGQKIVVV 30 (178)
T ss_dssp SHHHHHHHHHHHTTTCCCCEE
T ss_pred hHHHHHHHHHHHhCCCEEEEE
Confidence 689999999999999999875
No 98
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=24.96 E-value=51 Score=19.42 Aligned_cols=19 Identities=11% Similarity=0.396 Sum_probs=14.3
Q ss_pred cCCCCEEEEEeEeeeeeee
Q psy14498 70 LKKGSQIYIEGRLQTRKWT 88 (171)
Q Consensus 70 l~kG~~V~V~G~l~~~~~~ 88 (171)
|++|+.|.|..+....=|.
T Consensus 32 ~~~Gd~i~v~~~~~~~W~~ 50 (73)
T 3c0c_A 32 FREGDLITLTNQIDENWYE 50 (73)
T ss_dssp BCTTCEEEEEEECSSSEEE
T ss_pred CcCCCEEEEEEecCCCEEE
Confidence 8999999998876444343
No 99
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=24.40 E-value=38 Score=24.53 Aligned_cols=30 Identities=13% Similarity=0.404 Sum_probs=23.8
Q ss_pred ceEEEEEEE----hHHHHHHHHHcC------------CCCEEEEEe
Q psy14498 51 TEWHRITFY----RKLAQIVKQYLK------------KGSQIYIEG 80 (171)
Q Consensus 51 ~~~~~v~~~----g~~A~~~~~~l~------------kG~~V~V~G 80 (171)
-.|+=|-+- |++|..++..|. -||.|.|--
T Consensus 39 r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVIN 84 (174)
T 2zjr_G 39 QNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVIN 84 (174)
T ss_dssp CCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEEC
T ss_pred ccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEe
Confidence 457766664 779999999988 899999874
No 100
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=24.04 E-value=32 Score=25.59 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.2
Q ss_pred EhHHHHHHHHHcCCCCEEEEE
Q psy14498 59 YRKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 59 ~g~~A~~~~~~l~kG~~V~V~ 79 (171)
.|.+|..++..|.-||.|.|.
T Consensus 21 LGRLAS~VAk~Ll~Gd~VVVI 41 (206)
T 3iz5_K 21 LGRLASIVAKELLNGQRVVVV 41 (206)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHhCCCEEEEE
Confidence 478999999999899988875
No 101
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=23.75 E-value=34 Score=23.08 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=11.2
Q ss_pred cCCCCEEEEEeEe
Q psy14498 70 LKKGSQIYIEGRL 82 (171)
Q Consensus 70 l~kG~~V~V~G~l 82 (171)
|+|||.|+|+-.-
T Consensus 97 L~~GD~V~v~~~~ 109 (131)
T 2wnv_C 97 LQVGEEVWLAVND 109 (131)
T ss_dssp ECTTCEEEEEEEE
T ss_pred ECCCCEEEEEEeC
Confidence 9999999998743
No 102
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=23.34 E-value=1.4e+02 Score=21.77 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=44.9
Q ss_pred cEEEEEEEeCCCCeEEEecCCc--EEEEEEEEEecccccCCCCeeeeeceEEEEEEEhHHHHHHHHHcCCCCEEEEEeEe
Q psy14498 5 NKVIIIGNLGRDPETRYMSNGD--AVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRL 82 (171)
Q Consensus 5 N~v~l~G~l~~dp~~~~~~~g~--~~~~~~la~~~~~~~~~~G~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l 82 (171)
..|.|+|-|..--.-+.+..|+ -++.|+|.= .++... ..=+.|.+|.+..+.+=.-...||.|.+.. +
T Consensus 43 ~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D-~S~~~~--------~~gL~v~iF~~~~e~LP~V~~~GDIIlL~r-v 112 (187)
T 1qzg_A 43 TIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWD-PTCDTS--------SIGLQIHLFSKQGNDLPVIKQVGQPLLLHQ-I 112 (187)
T ss_dssp EEEEEEEEEEEEEEEEECSSTTCCEEEEEEEEC-TTSCTT--------SCCEEEEEEESSSSCSCCCCSTTCEEEEEE-E
T ss_pred CEEEEEEEEEEccCceecCCCCccEEEEEEEEe-CCCCCC--------CCceEEEEECCChhhCCCCCCCCCEEEEEE-E
Confidence 3578899886543333442344 667777753 333211 223789999876655444348899999985 4
Q ss_pred eeeeee
Q psy14498 83 QTRKWT 88 (171)
Q Consensus 83 ~~~~~~ 88 (171)
+...|.
T Consensus 113 kiq~~~ 118 (187)
T 1qzg_A 113 TLRSYR 118 (187)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 555664
No 103
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=23.22 E-value=35 Score=23.20 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=11.3
Q ss_pred cCCCCEEEEEeEe
Q psy14498 70 LKKGSQIYIEGRL 82 (171)
Q Consensus 70 l~kG~~V~V~G~l 82 (171)
|+|||.|+|+-.-
T Consensus 99 L~~GD~V~v~~~~ 111 (136)
T 2wnv_B 99 LEQGENVFLQATD 111 (136)
T ss_dssp ECTTCEEEEEEEE
T ss_pred ECCCCEEEEEEeC
Confidence 9999999998743
No 104
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=22.95 E-value=36 Score=23.02 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=11.3
Q ss_pred cCCCCEEEEEeEe
Q psy14498 70 LKKGSQIYIEGRL 82 (171)
Q Consensus 70 l~kG~~V~V~G~l 82 (171)
|+|||.|+|+-.-
T Consensus 98 L~~GD~V~l~~~~ 110 (134)
T 2wnv_A 98 LQQGDQVWVEKDP 110 (134)
T ss_dssp ECTTCEEEEEEEE
T ss_pred ECCCCEEEEEEeC
Confidence 9999999998743
No 105
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=22.90 E-value=72 Score=22.44 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=17.5
Q ss_pred hHHHHHHHHHcCCCCEEEEE
Q psy14498 60 RKLAQIVKQYLKKGSQIYIE 79 (171)
Q Consensus 60 g~~A~~~~~~l~kG~~V~V~ 79 (171)
...|+.+.+.+..|+.|.|.
T Consensus 145 ~~d~~~L~~~v~~Gt~V~I~ 164 (165)
T 4a1k_A 145 NKDVIELASIVPNGTRVTIN 164 (165)
T ss_dssp HHHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEE
Confidence 45889999999999999985
No 106
>1xee_A Chemotaxis-inhibiting protein chips; chemotaxis inhibitory protein, superantigen, C5A, immune system; NMR {Staphylococcus aureus} PDB: 2k3u_A*
Probab=22.66 E-value=27 Score=21.36 Aligned_cols=17 Identities=41% Similarity=0.749 Sum_probs=15.1
Q ss_pred EhHHHHHHHHHcCCCCE
Q psy14498 59 YRKLAQIVKQYLKKGSQ 75 (171)
Q Consensus 59 ~g~~A~~~~~~l~kG~~ 75 (171)
.|++-|++.++|+||..
T Consensus 8 lgklderlrnylkkgtk 24 (91)
T 1xee_A 8 LGKLDERLRNYLKKGTK 24 (91)
T ss_dssp HHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHhccc
Confidence 58899999999999975
No 107
>3tur_A Mycobacteria tuberculosis LD-transpeptidase type; protein-peptidoglycan complex, peptidoglycan binding protein; HET: 0JC DGL 6CL; 1.72A {Mycobacterium tuberculosis} PDB: 3u1p_A 3u1q_A 3vae_A 3tx4_A 4huc_A
Probab=22.32 E-value=76 Score=24.70 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=22.5
Q ss_pred EEEEE-EhHHHHHHHHHcCCCCEEEEEeE
Q psy14498 54 HRITF-YRKLAQIVKQYLKKGSQIYIEGR 81 (171)
Q Consensus 54 ~~v~~-~g~~A~~~~~~l~kG~~V~V~G~ 81 (171)
|-|+- ....|+.+.+.+..|+.|.|.+.
T Consensus 231 HGCIrL~~~da~~Ly~~v~~GTpV~I~~s 259 (287)
T 3tur_A 231 HGCLNVSPSNAQWFYDHVKRGDIVEVVNT 259 (287)
T ss_dssp SSSEEECHHHHHHHHHHCCTTCEEEEESC
T ss_pred ccCcCCCHHHHHHHHHhCCCCCEEEEEeC
Confidence 33443 45689999999999999999986
No 108
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=21.51 E-value=56 Score=21.02 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCCCEEEEEeEeeeeee
Q psy14498 62 LAQIVKQYLKKGSQIYIEGRLQTRKW 87 (171)
Q Consensus 62 ~A~~~~~~l~kG~~V~V~G~l~~~~~ 87 (171)
.+..+.++|.+|+.|-|.=+++-+.-
T Consensus 24 K~k~a~~FL~~GdKVKvti~fRGRE~ 49 (94)
T 1tig_A 24 KLRNARKFLEKGDKVKATIRFKGRAI 49 (94)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCSCCT
T ss_pred HHHHHHHHHHCCCEEEEEEEECCccc
Confidence 56788889999999999988877653
No 109
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=20.21 E-value=94 Score=22.49 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=21.1
Q ss_pred hHHHHHHHHHcCCCCEEEEEeEeeeee
Q psy14498 60 RKLAQIVKQYLKKGSQIYIEGRLQTRK 86 (171)
Q Consensus 60 g~~A~~~~~~l~kG~~V~V~G~l~~~~ 86 (171)
|....++.+.++.|+.|.|.|-.-.-.
T Consensus 83 G~~S~~l~~~l~~G~~v~v~gP~G~~~ 109 (243)
T 4eh1_A 83 GLVSHYLHNNVKVGDSVKLYAPAGDFF 109 (243)
T ss_dssp CHHHHHHHHHCCTTCEEEEEEEECSCC
T ss_pred CeehhHHHhcCCCCCEEEEEccCcccC
Confidence 666777777899999999999664433
No 110
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=20.10 E-value=50 Score=23.64 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.2
Q ss_pred EhHHHHHHHHHcC------------CCCEEEEE
Q psy14498 59 YRKLAQIVKQYLK------------KGSQIYIE 79 (171)
Q Consensus 59 ~g~~A~~~~~~l~------------kG~~V~V~ 79 (171)
.|.+|..++..|. -||.|.|.
T Consensus 46 LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVI 78 (163)
T 3f1f_N 46 LGRLATKIATLLRGKHRPDWTPNVAMGDFVVVV 78 (163)
T ss_dssp HHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEEC
T ss_pred hHHHHHHHHHHHhcCCCCccCCcccCCCEEEEE
Confidence 4789999999987 89998875
Done!