Your job contains 1 sequence.
>psy14498
MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR
KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNEKNIS
NNLENNFFNIMSARKNYTSNTNNEKEKSKENFKTQPLPISNFLEADDDVPF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14498
(171 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CBU_0271 - symbol:CBU_0271 "single-strand bindin... 382 1.5e-37 2
UNIPROTKB|P0AGE0 - symbol:ssb "ssDNA-binding protein" spe... 379 4.0e-37 2
UNIPROTKB|Q9KUW2 - symbol:ssb "Single-stranded DNA-bindin... 379 4.0e-37 2
TIGR_CMR|VC_0397 - symbol:VC_0397 "single-strand binding ... 379 4.0e-37 2
TIGR_CMR|SO_4028 - symbol:SO_4028 "single-strand binding ... 369 5.7e-36 2
TIGR_CMR|GSU_3117 - symbol:GSU_3117 "single-strand bindin... 321 7.7e-31 2
TIGR_CMR|NSE_0759 - symbol:NSE_0759 "single-strand bindin... 317 2.0e-30 2
TIGR_CMR|SPO_1637 - symbol:SPO_1637 "single-strand bindin... 331 6.2e-30 1
TIGR_CMR|GSU_2151 - symbol:GSU_2151 "single-strand bindin... 313 5.0e-28 1
TIGR_CMR|ECH_0815 - symbol:ECH_0815 "single-strand bindin... 296 3.2e-26 1
TIGR_CMR|APH_0465 - symbol:APH_0465 "single-strand bindin... 275 5.3e-24 1
TIGR_CMR|DET_1045 - symbol:DET_1045 "single-strand bindin... 251 1.9e-21 1
GENEDB_PFALCIPARUM|PFE0435c - symbol:PFE0435c "single-str... 244 1.0e-20 1
UNIPROTKB|Q8I415 - symbol:PFE0435c "Single-strand binding... 244 1.0e-20 1
TIGR_CMR|BA_5722 - symbol:BA_5722 "single-stranded DNA-bi... 199 2.7e-18 2
TIGR_CMR|CJE_1214 - symbol:CJE_1214 "single-strand bindin... 218 5.8e-18 1
UNIPROTKB|E2RST4 - symbol:SSBP1 "Single-stranded DNA-bind... 214 1.6e-17 1
UNIPROTKB|F1N1S0 - symbol:SSBP1 "Single-stranded DNA-bind... 212 2.5e-17 1
UNIPROTKB|F1SRQ7 - symbol:SSBP1 "Single-stranded DNA-bind... 211 3.2e-17 1
UNIPROTKB|E1BTE0 - symbol:SSBP1 "Single-stranded DNA-bind... 209 5.3e-17 1
UNIPROTKB|Q04837 - symbol:SSBP1 "Single-stranded DNA-bind... 209 5.3e-17 1
UNIPROTKB|Q5RDQ0 - symbol:SSBP1 "Single-stranded DNA-bind... 208 6.7e-17 1
ZFIN|ZDB-GENE-050417-340 - symbol:ssbp1 "single-stranded ... 208 6.7e-17 1
UNIPROTKB|Q95KK4 - symbol:SSBP1 "Single-stranded DNA-bind... 207 8.6e-17 1
UNIPROTKB|Q32PB0 - symbol:SSBP1 "Single-stranded DNA-bind... 205 1.4e-16 1
UNIPROTKB|E7EUY5 - symbol:SSBP1 "Single-stranded DNA-bind... 200 4.7e-16 1
RGD|3760 - symbol:Ssbp1 "single-stranded DNA binding prot... 199 6.0e-16 1
UNIPROTKB|P28042 - symbol:Ssbp1 "Single-stranded DNA-bind... 199 6.0e-16 1
UNIPROTKB|P09380 - symbol:ssbp1-a "Single-stranded DNA-bi... 197 9.8e-16 1
UNIPROTKB|P09381 - symbol:ssbp1-b "Single-stranded DNA-bi... 193 2.6e-15 1
TIGR_CMR|CHY_0036 - symbol:CHY_0036 "single-strand bindin... 192 3.3e-15 1
MGI|MGI:1920040 - symbol:Ssbp1 "single-stranded DNA bindi... 187 1.1e-14 1
FB|FBgn0010438 - symbol:mtSSB "mitochondrial single stran... 172 4.4e-13 1
UNIPROTKB|C9K0U8 - symbol:SSBP1 "Single-stranded DNA-bind... 171 5.6e-13 1
TIGR_CMR|BA_2168 - symbol:BA_2168 "single-stranded DNA-bi... 164 3.1e-12 1
UNIPROTKB|P0A610 - symbol:ssb "Single-stranded DNA-bindin... 162 5.0e-12 1
TAIR|locus:2086889 - symbol:AT3G18580 species:3702 "Arabi... 127 3.4e-08 1
WB|WBGene00019800 - symbol:mtss-1 species:6239 "Caenorhab... 119 1.8e-07 1
TAIR|locus:2136083 - symbol:MTSSB "mitochondrially target... 118 2.8e-07 1
UNIPROTKB|Q48AK8 - symbol:CPS_0137 "Single-strand binding... 119 3.8e-07 1
TIGR_CMR|CPS_0137 - symbol:CPS_0137 "single-strand bindin... 119 3.8e-07 1
>TIGR_CMR|CBU_0271 [details] [associations]
symbol:CBU_0271 "single-strand binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
RefSeq:NP_819315.1 PDB:3TQY PDBsum:3TQY ProteinModelPortal:Q83EP4
SMR:Q83EP4 PRIDE:Q83EP4 GeneID:1208152 KEGG:cbu:CBU_0271
PATRIC:17929233 HOGENOM:HOG000106483 OMA:KWQTKEG
ProtClustDB:CLSK913941 BioCyc:CBUR227377:GJ7S-275-MONOMER
Uniprot:Q83EP4
Length = 158
Score = 382 (139.5 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 68/108 (62%), Positives = 89/108 (82%)
Query: 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLA 63
VNKVI+IGNLG+DPE RY NG+AV NV++AT+ WRDK +GE +E TEWHRI F+ +LA
Sbjct: 5 VNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLA 64
Query: 64 QIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+IV +YL+KGS+IYIEG L+TRKW +K GV++Y TE+IA+ M ML +R
Sbjct: 65 EIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 112
Score = 37 (18.1 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 160 SNFLEADDDVPF 171
S+ + DDD+PF
Sbjct: 147 SSVADFDDDIPF 158
>UNIPROTKB|P0AGE0 [details] [associations]
symbol:ssb "ssDNA-binding protein" species:83333
"Escherichia coli K-12" [GO:0000725 "recombinational repair"
evidence=TAS] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA;IDA] [GO:0009432 "SOS
response" evidence=TAS] UniProt:P0AGE0 InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006260 GO:GO:0006298 EMBL:U00006
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0009432 GO:GO:0000725 PDB:3SXU PDBsum:3SXU eggNOG:COG0629
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HOGENOM:HOG000106483
EMBL:J01704 PIR:B65214 RefSeq:NP_418483.1 RefSeq:YP_492202.1
PDB:1EQQ PDB:1EYG PDB:1KAW PDB:1QVC PDB:1SRU PDB:3UF7 PDBsum:1EQQ
PDBsum:1EYG PDBsum:1KAW PDBsum:1QVC PDBsum:1SRU PDBsum:3UF7
ProteinModelPortal:P0AGE0 SMR:P0AGE0 DIP:DIP-35980N IntAct:P0AGE0
SWISS-2DPAGE:P0AGE0 PRIDE:P0AGE0 EnsemblBacteria:EBESCT00000004930
EnsemblBacteria:EBESCT00000004931 EnsemblBacteria:EBESCT00000004932
EnsemblBacteria:EBESCT00000018161 GeneID:12933677 GeneID:948570
KEGG:ecj:Y75_p3946 KEGG:eco:b4059 PATRIC:32123663 EchoBASE:EB0969
EcoGene:EG10976 OMA:SRPQQQS ProtClustDB:PRK09010
BioCyc:EcoCyc:EG10976-MONOMER BioCyc:ECOL316407:JW4020-MONOMER
EvolutionaryTrace:P0AGE0 Genevestigator:P0AGE0
Length = 178
Score = 379 (138.5 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 68/116 (58%), Positives = 93/116 (80%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM NG AV N+++AT+E+WRDK +GE +E TEWHR+
Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD---NMQMLGSR 111
+ KLA++ +YL+KGSQ+YIEG+L+TRKWT++ G ++Y TEV+ + MQMLG R
Sbjct: 61 FGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116
Score = 36 (17.7 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 163 LEADDDVPF 171
++ DDD+PF
Sbjct: 170 MDFDDDIPF 178
>UNIPROTKB|Q9KUW2 [details] [associations]
symbol:ssb "Single-stranded DNA-binding protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
ProtClustDB:PRK09010 OMA:NQRPPAQ EMBL:AF079406 PIR:B82326
RefSeq:NP_230051.1 ProteinModelPortal:Q9KUW2 SMR:Q9KUW2
DNASU:2614994 GeneID:2614994 KEGG:vch:VC0397 PATRIC:20079875
Uniprot:Q9KUW2
Length = 177
Score = 379 (138.5 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 71/117 (60%), Positives = 92/117 (78%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI+IGNLG+DPE RYM +G AV N++IAT+E WRDK +GE++E TEWHR+T
Sbjct: 1 MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADN----MQMLGSR 111
Y KLA++ +YL+KGSQ+YIEG+LQTRKW ++ G ++Y TEV+ MQMLG R
Sbjct: 61 YGKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGR 117
Score = 36 (17.7 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 163 LEADDDVPF 171
++ DDD+PF
Sbjct: 169 MDFDDDIPF 177
>TIGR_CMR|VC_0397 [details] [associations]
symbol:VC_0397 "single-strand binding protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
ProtClustDB:PRK09010 OMA:NQRPPAQ EMBL:AF079406 PIR:B82326
RefSeq:NP_230051.1 ProteinModelPortal:Q9KUW2 SMR:Q9KUW2
DNASU:2614994 GeneID:2614994 KEGG:vch:VC0397 PATRIC:20079875
Uniprot:Q9KUW2
Length = 177
Score = 379 (138.5 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 71/117 (60%), Positives = 92/117 (78%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI+IGNLG+DPE RYM +G AV N++IAT+E WRDK +GE++E TEWHR+T
Sbjct: 1 MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTL 60
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADN----MQMLGSR 111
Y KLA++ +YL+KGSQ+YIEG+LQTRKW ++ G ++Y TEV+ MQMLG R
Sbjct: 61 YGKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGR 117
Score = 36 (17.7 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 163 LEADDDVPF 171
++ DDD+PF
Sbjct: 169 MDFDDDIPF 177
>TIGR_CMR|SO_4028 [details] [associations]
symbol:SO_4028 "single-strand binding protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PROSITE:PS50935 GO:GO:0006260
GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106483 RefSeq:NP_719558.1 ProteinModelPortal:Q8EA81
SMR:Q8EA81 GeneID:1171655 KEGG:son:SO_4028 PATRIC:23527722
OMA:NQRPPAQ ProtClustDB:CLSK907458 Uniprot:Q8EA81
Length = 238
Score = 369 (135.0 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
Identities = 67/116 (57%), Positives = 95/116 (81%)
Query: 1 MAS--VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITF 58
MAS VNKVI++GNLG+DPE RYM NG+AV N+++AT+E+W+D+ G+++E TEWHR+
Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQ-GQQQERTEWHRVVL 59
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD---NMQMLGSR 111
+ KLA+I +YL+KGSQ+Y+EG+LQTRKW ++ G ++Y TEV+ D +MQMLGSR
Sbjct: 60 FGKLAEITGEYLRKGSQVYLEGKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSR 115
Score = 35 (17.4 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 156 PLPISNF---LEA--DDDVPF 171
P P NF L+ DDD+PF
Sbjct: 218 PQPQQNFTPDLDDGWDDDIPF 238
>TIGR_CMR|GSU_3117 [details] [associations]
symbol:GSU_3117 "single-strand binding protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HOGENOM:HOG000106483
RefSeq:NP_954158.1 HSSP:P02339 ProteinModelPortal:Q747Z8 SMR:Q747Z8
GeneID:2687451 KEGG:gsu:GSU3117 PATRIC:22029089 OMA:CAVANIN
ProtClustDB:CLSK829121 BioCyc:GSUL243231:GH27-3110-MONOMER
Uniprot:Q747Z8
Length = 146
Score = 321 (118.1 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 58/111 (52%), Positives = 83/111 (74%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MAS+NKV++IGNLG+DPE RY G AV + S+ATTE ++++N GE E TEWH + +
Sbjct: 1 MASLNKVMLIGNLGKDPEVRYTPAGTAVASFSLATTEKFKNRN-GEFEEKTEWHNVVLWG 59
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+ A+I +YL KG ++IEGRLQTRKW +K+G +++ TEV+ + MQMLG +
Sbjct: 60 RQAEIAGEYLAKGRTVFIEGRLQTRKWQDKDGRDRWTTEVVGERMQMLGGK 110
Score = 34 (17.0 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 166 DDDVPF 171
DDD+PF
Sbjct: 141 DDDIPF 146
>TIGR_CMR|NSE_0759 [details] [associations]
symbol:NSE_0759 "single-strand binding protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106483 RefSeq:YP_506634.1 ProteinModelPortal:Q2GD12
SMR:Q2GD12 STRING:Q2GD12 GeneID:3931638 KEGG:nse:NSE_0759
PATRIC:22681523 OMA:TAEIVEN ProtClustDB:CLSK2528123
BioCyc:NSEN222891:GHFU-770-MONOMER Uniprot:Q2GD12
Length = 151
Score = 317 (116.6 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 53/99 (53%), Positives = 75/99 (75%)
Query: 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK-L 62
+NKVI++GNLG+DPE R MSN V S+ATTENW DKN+GE+ TEWH++ + + L
Sbjct: 2 INKVILVGNLGKDPEVRTMSNAKQVATFSLATTENWNDKNTGERVSKTEWHQVVVFNEPL 61
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVI 101
+++ Y+ KG+++YIEG LQTRKWT+ G+E+Y TEV+
Sbjct: 62 IKVISNYVNKGTRLYIEGSLQTRKWTDNNGIERYTTEVV 100
Score = 34 (17.0 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 166 DDDVPF 171
DDD+PF
Sbjct: 146 DDDIPF 151
>TIGR_CMR|SPO_1637 [details] [associations]
symbol:SPO_1637 "single-strand binding protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HOGENOM:HOG000106483
OMA:IATSENW RefSeq:YP_166878.1 ProteinModelPortal:Q5LSX7 SMR:Q5LSX7
GeneID:3193067 KEGG:sil:SPO1637 PATRIC:23376599
ProtClustDB:CLSK751564 Uniprot:Q5LSX7
Length = 180
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 56/100 (56%), Positives = 80/100 (80%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK- 61
SVNKVI++GNLGRDPE R NG V N+ IAT+ENW+D+N+GE+RE TEWH + + +
Sbjct: 4 SVNKVILVGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRNTGERRERTEWHSVAIFSEG 63
Query: 62 LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVI 101
L ++ +QYL+KGS++Y+EG+LQTRKW ++ G ++Y TEV+
Sbjct: 64 LVRVAEQYLRKGSKVYLEGQLQTRKWQDQSGQDRYSTEVV 103
>TIGR_CMR|GSU_2151 [details] [associations]
symbol:GSU_2151 "single-strand binding protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HOGENOM:HOG000106483
HSSP:P02339 RefSeq:NP_953200.1 ProteinModelPortal:Q74B90
GeneID:2687634 KEGG:gsu:GSU2151 PATRIC:22027155 OMA:DAICNIT
ProtClustDB:CLSK763171 BioCyc:GSUL243231:GH27-2137-MONOMER
Uniprot:Q74B90
Length = 139
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 56/111 (50%), Positives = 81/111 (72%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
MAS+N+V +IGNLGRDPE RY G AV + S+AT+E ++K SGE TEWH I Y
Sbjct: 1 MASLNRVELIGNLGRDPEIRYTPGGTAVASFSLATSEKVKNK-SGEWETRTEWHNIVLYA 59
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+LA++ +YL KG +Y++G+L+TRKW +++G ++Y TE+I D + MLGS+
Sbjct: 60 RLAEVAGEYLSKGKSVYLDGKLKTRKWQDRDGKDRYTTEIIGDKLLMLGSK 110
>TIGR_CMR|ECH_0815 [details] [associations]
symbol:ECH_0815 "single-strand binding protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106483 RefSeq:YP_507611.1 ProteinModelPortal:Q2GG22
SMR:Q2GG22 STRING:Q2GG22 GeneID:3926994 KEGG:ech:ECH_0815
PATRIC:20577056 OMA:CARKGSK ProtClustDB:CLSK749103
BioCyc:ECHA205920:GJNR-818-MONOMER Uniprot:Q2GG22
Length = 157
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 54/99 (54%), Positives = 75/99 (75%)
Query: 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK-L 62
VNKVI+IGNLG+DP+ R M NG + + SIAT+E+W DK SG + E TEWH + + + L
Sbjct: 6 VNKVILIGNLGKDPDIRVMQNGKEMASFSIATSESWVDKASGMRTEKTEWHNVVVFNEGL 65
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVI 101
+I+K ++KGS+IYIEG L+TRKWT++ V++Y TEVI
Sbjct: 66 VKIIKNCIRKGSKIYIEGSLRTRKWTDQNNVDRYTTEVI 104
>TIGR_CMR|APH_0465 [details] [associations]
symbol:APH_0465 "single-strand binding protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003697 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106483 OMA:CARKGSK RefSeq:YP_505066.1
ProteinModelPortal:Q2GKN5 SMR:Q2GKN5 STRING:Q2GKN5 GeneID:3931215
KEGG:aph:APH_0465 PATRIC:20949566 ProtClustDB:CLSK747308
BioCyc:APHA212042:GHPM-492-MONOMER Uniprot:Q2GKN5
Length = 159
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 49/99 (49%), Positives = 71/99 (71%)
Query: 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRK-L 62
VNKVI+IG LG+DP+ R M NG + N S+AT+E+W DK SG + E TEWH I + + L
Sbjct: 6 VNKVILIGYLGKDPDVRVMQNGKEMANFSLATSESWLDKASGSRTEKTEWHNIVVFSEGL 65
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVI 101
++VK +KGS++Y+EG L+TRKW ++ ++Y TEV+
Sbjct: 66 VKVVKTCARKGSKVYLEGSLRTRKWVDQNNNDRYTTEVV 104
>TIGR_CMR|DET_1045 [details] [associations]
symbol:DET_1045 "single-strand binding protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003697 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106484 RefSeq:YP_181761.1 ProteinModelPortal:Q3Z7N8
STRING:Q3Z7N8 GeneID:3229653 KEGG:det:DET1045 PATRIC:21609139
OMA:TAGANDF ProtClustDB:CLSK837124
BioCyc:DETH243164:GJNF-1046-MONOMER Uniprot:Q3Z7N8
Length = 135
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 49/109 (44%), Positives = 71/109 (65%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENW-RDKNSGEKRELTEWHRITFY 59
M S+NKV+IIGN+G +PE RY +G VT+ +AT NW + GE+++ TEW + +
Sbjct: 1 MVSLNKVMIIGNVGGEPEMRYTPSGHPVTSFKVAT--NWVYNTPEGERKQETEWFTVVAW 58
Query: 60 RKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQML 108
KLA+ Q+L KG +Y+EGRL+TR W ++ V+ Y TEVIA + L
Sbjct: 59 NKLAEQCNQFLSKGRLVYVEGRLRTRSWEGQDSVKHYRTEVIASRVTFL 107
>GENEDB_PFALCIPARUM|PFE0435c [details] [associations]
symbol:PFE0435c "single-strand binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL844504
GO:GO:0020011 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HSSP:Q04837 RefSeq:XP_001351646.1 PDB:3ULP PDBsum:3ULP
ProteinModelPortal:Q8I415 PRIDE:Q8I415
EnsemblProtists:PFE0435c:mRNA GeneID:812855 KEGG:pfa:PFE0435c
EuPathDB:PlasmoDB:PF3D7_0508800 HOGENOM:HOG000284108
ProtClustDB:CLSZ2433225 Uniprot:Q8I415
Length = 284
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 43/102 (42%), Positives = 70/102 (68%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFY-RK 61
S+NK+++IG +G +P+ + ++ GD V S+AT E WRD+N+ E + T+WHRI Y +
Sbjct: 81 SLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQN 140
Query: 62 LAQIVKQYLKKGSQIYIEGRLQTRKW-TNKEGVE-KYITEVI 101
+ ++ +YL+KG ++Y++G L TRKW TN + K ITE+I
Sbjct: 141 IVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEII 182
>UNIPROTKB|Q8I415 [details] [associations]
symbol:PFE0435c "Single-strand binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PROSITE:PS50935 GO:GO:0006260 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL844504 GO:GO:0020011
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HSSP:Q04837
RefSeq:XP_001351646.1 PDB:3ULP PDBsum:3ULP
ProteinModelPortal:Q8I415 PRIDE:Q8I415
EnsemblProtists:PFE0435c:mRNA GeneID:812855 KEGG:pfa:PFE0435c
EuPathDB:PlasmoDB:PF3D7_0508800 HOGENOM:HOG000284108
ProtClustDB:CLSZ2433225 Uniprot:Q8I415
Length = 284
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 43/102 (42%), Positives = 70/102 (68%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFY-RK 61
S+NK+++IG +G +P+ + ++ GD V S+AT E WRD+N+ E + T+WHRI Y +
Sbjct: 81 SLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQN 140
Query: 62 LAQIVKQYLKKGSQIYIEGRLQTRKW-TNKEGVE-KYITEVI 101
+ ++ +YL+KG ++Y++G L TRKW TN + K ITE+I
Sbjct: 141 IVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEII 182
>TIGR_CMR|BA_5722 [details] [associations]
symbol:BA_5722 "single-stranded DNA-binding protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006260 GO:GO:0006281 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106484 RefSeq:NP_847868.2 RefSeq:YP_022408.1
RefSeq:YP_031563.1 ProteinModelPortal:Q81JI3 DNASU:1085491
EnsemblBacteria:EBBACT00000008539 EnsemblBacteria:EBBACT00000016501
EnsemblBacteria:EBBACT00000021062 GeneID:1085491 GeneID:2816011
GeneID:2848521 KEGG:ban:BA_5722 KEGG:bar:GBAA_5722 KEGG:bat:BAS5326
OMA:GSGNDMG ProtClustDB:PRK06751
BioCyc:BANT260799:GJAJ-5403-MONOMER
BioCyc:BANT261594:GJ7F-5579-MONOMER Uniprot:Q81JI3
Length = 172
Score = 199 (75.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 43/108 (39%), Positives = 68/108 (62%)
Query: 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLA 63
+N+VI++G L +DP+ RY NG AV ++A + ++ GE RE ++ +RK A
Sbjct: 1 MNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQ-GE-RE-ADFINCVIWRKQA 57
Query: 64 QIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+ V YLKKGS ++GRLQTR + ++G Y+TEV+A+++Q L R
Sbjct: 58 ENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 105
Score = 36 (17.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 155 QPLPISNFLEADDDVPF 171
QP+ IS DDD+PF
Sbjct: 161 QPIDIS-----DDDLPF 172
>TIGR_CMR|CJE_1214 [details] [associations]
symbol:CJE_1214 "single-strand binding protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106484 RefSeq:YP_179202.1 ProteinModelPortal:Q5HU33
STRING:Q5HU33 GeneID:3231721 KEGG:cjr:CJE1214 PATRIC:20044224
OMA:ENFNNAY ProtClustDB:PRK08486
BioCyc:CJEJ195099:GJC0-1240-MONOMER Uniprot:Q5HU33
Length = 182
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 45/106 (42%), Positives = 69/106 (65%)
Query: 5 NKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQ 64
NKV+++GNL RD E RY +G A+ +IA T R +GEKRE T + I+FY + A+
Sbjct: 3 NKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTR--RFTANGEKREETCFIDISFYGRTAE 60
Query: 65 IVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGS 110
+ QYL KGS++ IEGRL+ +W+++ G + + +NM+MLG+
Sbjct: 61 VANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENMEMLGN 106
>UNIPROTKB|E2RST4 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9615 "Canis lupus familiaris" [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0042645 "mitochondrial
nucleoid" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003682
GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0070584 GO:GO:0051096
GeneTree:ENSGT00390000002796 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
KO:K03111 CTD:6742 OMA:ITYGEIT EMBL:AAEX03010199
RefSeq:NP_001239208.1 RefSeq:XP_003639657.1 UniGene:Cfa.39495
ProteinModelPortal:E2RST4 Ensembl:ENSCAFT00000006249
GeneID:100855532 GeneID:475524 KEGG:cfa:100855532 KEGG:cfa:475524
NextBio:20851350 Uniprot:E2RST4
Length = 148
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 44/115 (38%), Positives = 70/115 (60%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNS-----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR S G+ + T WHRI+
Sbjct: 29 SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGESETYQMGDVSQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+R L + QY+KKGS+IY+EG++ ++T+K V + T +IADN+ L +
Sbjct: 89 VFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYTDKNNVRRQATTIIADNIIFLSDQ 143
>UNIPROTKB|F1N1S0 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9913 "Bos taurus" [GO:0070584 "mitochondrion morphogenesis"
evidence=IEA] [GO:0051096 "positive regulation of helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003682 GO:GO:0042645 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584
GO:GO:0051096 GeneTree:ENSGT00390000002796 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 IPI:IPI00695890 UniGene:Bt.65086 OMA:ITYGEIT
EMBL:DAAA02011751 ProteinModelPortal:F1N1S0
Ensembl:ENSBTAT00000014520 Uniprot:F1N1S0
Length = 148
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 44/115 (38%), Positives = 71/115 (61%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRD-KNS----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR +N G+ + T WHRI+
Sbjct: 29 SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGENETYQMGDVSQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+R L + QY+KKGS+IY+EG++ ++T+K V + T +IADN+ L +
Sbjct: 89 VFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYTDKNNVRRQATTIIADNIIFLSDQ 143
>UNIPROTKB|F1SRQ7 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9823 "Sus scrofa" [GO:0070584 "mitochondrion morphogenesis"
evidence=IEA] [GO:0051096 "positive regulation of helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003682 GO:GO:0042645 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584
GO:GO:0051096 GeneTree:ENSGT00390000002796 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 KO:K03111 OMA:ITYGEIT EMBL:CU914341
RefSeq:XP_003134650.1 Ensembl:ENSSSCT00000017952 GeneID:100512994
KEGG:ssc:100512994 Uniprot:F1SRQ7
Length = 148
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 43/115 (37%), Positives = 71/115 (61%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRD-KNS----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR +N G+ + T WHRI+
Sbjct: 29 SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGENEAYQMGDVSQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+R L + QY+KKGS++Y+EG++ ++T+K V + T +IADN+ L +
Sbjct: 89 VFRPGLRDVAYQYVKKGSRVYVEGKVDYGEYTDKNNVRRQATTIIADNIIFLSDQ 143
>UNIPROTKB|E1BTE0 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9031 "Gallus gallus" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] [GO:0070584
"mitochondrion morphogenesis" evidence=IEA] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003682 GO:GO:0042645 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0051096
GeneTree:ENSGT00390000002796 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
KO:K03111 CTD:6742 OMA:ITYGEIT EMBL:AADN02006380 IPI:IPI00593118
RefSeq:XP_416355.1 UniGene:Gga.2863 ProteinModelPortal:E1BTE0
PRIDE:E1BTE0 Ensembl:ENSGALT00000021003 GeneID:418122
KEGG:gga:418122 NextBio:20821329 Uniprot:E1BTE0
Length = 149
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 43/112 (38%), Positives = 69/112 (61%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRD-----KNSGEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR +G+ + T WHRI+
Sbjct: 30 SMNRVQLLGRVGQDPIMRQVDGKNPVTIFSLATNEMWRTGETEVAQTGDISQKTTWHRIS 89
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQML 108
+R L + QY+KKGS++Y+EG+L ++T+K V + T +IADN+ L
Sbjct: 90 VFRPGLRDVTYQYVKKGSRLYVEGKLDYGEYTDKNNVRRQATTIIADNVIFL 141
>UNIPROTKB|Q04837 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein,
mitochondrial" species:9606 "Homo sapiens" [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] [GO:0051096 "positive regulation of
helicase activity" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260
GO:GO:0003682 GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584 GO:GO:0051096
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
HOVERGEN:HBG001181 KO:K03111 CTD:6742 OrthoDB:EOG4KSPM4 OMA:ITYGEIT
EMBL:M94556 EMBL:AF277319 EMBL:BC000895 IPI:IPI00029744 PIR:JN0568
RefSeq:NP_001243439.1 RefSeq:NP_001243440.1 RefSeq:NP_001243441.1
RefSeq:NP_001243442.1 RefSeq:NP_003134.1 UniGene:Hs.490394 PDB:1S3O
PDB:2DUD PDB:3ULL PDBsum:1S3O PDBsum:2DUD PDBsum:3ULL
ProteinModelPortal:Q04837 SMR:Q04837 IntAct:Q04837
MINT:MINT-3025472 STRING:Q04837 PhosphoSite:Q04837 DMDM:417811
UCD-2DPAGE:Q04837 PaxDb:Q04837 PeptideAtlas:Q04837 PRIDE:Q04837
DNASU:6742 Ensembl:ENST00000265304 Ensembl:ENST00000465582
Ensembl:ENST00000481508 Ensembl:ENST00000484178
Ensembl:ENST00000498107 GeneID:6742 KEGG:hsa:6742 UCSC:uc003vwo.1
GeneCards:GC07P141440 HGNC:HGNC:11317 HPA:HPA002866 MIM:600439
neXtProt:NX_Q04837 PharmGKB:PA36141 InParanoid:Q04837
PhylomeDB:Q04837 ChiTaRS:SSBP1 EvolutionaryTrace:Q04837
GenomeRNAi:6742 NextBio:26300 ArrayExpress:Q04837 Bgee:Q04837
CleanEx:HS_SSBP1 Genevestigator:Q04837 GermOnline:ENSG00000106028
Uniprot:Q04837
Length = 148
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 43/115 (37%), Positives = 70/115 (60%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNS-----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR +S G+ + T WHRI+
Sbjct: 29 SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+R L + QY+KKGS+IY+EG++ ++ +K V + T +IADN+ L +
Sbjct: 89 VFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 143
>UNIPROTKB|Q5RDQ0 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein,
mitochondrial" species:9601 "Pongo abelii" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0042645 "mitochondrial nucleoid"
evidence=ISS] InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003682
GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0070584 GO:GO:0051096
GeneTree:ENSGT00390000002796 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
HOVERGEN:HBG001181 KO:K03111 CTD:6742 HOGENOM:HOG000106484
OrthoDB:EOG4KSPM4 OMA:ITYGEIT EMBL:CR857853 RefSeq:NP_001127238.1
UniGene:Pab.19353 HSSP:Q04837 ProteinModelPortal:Q5RDQ0 SMR:Q5RDQ0
PRIDE:Q5RDQ0 Ensembl:ENSPPYT00000021068 GeneID:100174293
KEGG:pon:100174293 InParanoid:Q5RDQ0 Uniprot:Q5RDQ0
Length = 148
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 43/115 (37%), Positives = 70/115 (60%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNS-----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR +S G+ + T WHRI+
Sbjct: 29 SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDISQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+R L + QY+KKGS+IY+EG++ ++ +K V + T +IADN+ L +
Sbjct: 89 VFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 143
>ZFIN|ZDB-GENE-050417-340 [details] [associations]
symbol:ssbp1 "single-stranded DNA binding protein
1" species:7955 "Danio rerio" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
ZFIN:ZDB-GENE-050417-340 GO:GO:0005739 GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 HOVERGEN:HBG001181 KO:K03111
CTD:6742 EMBL:BC092875 IPI:IPI00570084 RefSeq:NP_001017806.1
UniGene:Dr.17626 ProteinModelPortal:Q568F8 SMR:Q568F8 STRING:Q568F8
PRIDE:Q568F8 GeneID:550504 KEGG:dre:550504 InParanoid:Q568F8
NextBio:20879746 ArrayExpress:Q568F8 Bgee:Q568F8 Uniprot:Q568F8
Length = 146
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 43/112 (38%), Positives = 68/112 (60%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKN-----SGEKRELTEWHRIT 57
S+NKV I+G +G+DP R + + VT S+AT E WR +G+ + T WHRI+
Sbjct: 28 SINKVQILGRVGQDPVMRQVEGRNPVTIFSMATNEMWRSGEGEPVGAGDVTQKTTWHRIS 87
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQML 108
++ L + QY+KKGS+I++EG+L ++ +K V + T +IADN+ L
Sbjct: 88 VFKPGLRDVAYQYVKKGSRIFVEGKLDYGEYVDKNNVRRQATTIIADNIVFL 139
>UNIPROTKB|Q95KK4 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein,
mitochondrial" species:9986 "Oryctolagus cuniculus" [GO:0003682
"chromatin binding" evidence=ISS] [GO:0042645 "mitochondrial
nucleoid" evidence=ISS] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260
GO:GO:0003682 GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 CTD:6741 eggNOG:COG0629
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 HOVERGEN:HBG001181
HOGENOM:HOG000106484 OrthoDB:EOG4KSPM4 HSSP:Q04837 EMBL:AJ311162
RefSeq:NP_001075600.1 UniGene:Ocu.3243 ProteinModelPortal:Q95KK4
SMR:Q95KK4 PRIDE:Q95KK4 GeneID:100008866 Uniprot:Q95KK4
Length = 148
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 42/115 (36%), Positives = 70/115 (60%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNS-----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR ++ G+ + T WHRI+
Sbjct: 29 SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDNETYQMGDVSQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+R L + QY+KKGS+IY+EG++ ++ +K V + T +IADN+ L +
Sbjct: 89 VFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYMDKNNVRRQATTIIADNIVFLSDQ 143
>UNIPROTKB|Q32PB0 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein,
mitochondrial" species:9913 "Bos taurus" [GO:0042645 "mitochondrial
nucleoid" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003682
GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
HOVERGEN:HBG001181 KO:K03111 EMBL:BC108189 IPI:IPI00695890
RefSeq:NP_001032543.1 UniGene:Bt.65086 HSSP:P0AGE0
ProteinModelPortal:Q32PB0 SMR:Q32PB0 STRING:Q32PB0 PRIDE:Q32PB0
GeneID:515765 KEGG:bta:515765 CTD:6742 HOGENOM:HOG000106484
InParanoid:Q32PB0 OrthoDB:EOG4KSPM4 NextBio:20871993 Uniprot:Q32PB0
Length = 148
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 43/115 (37%), Positives = 70/115 (60%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRD-KNS----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + T S+AT E WR +N G+ + T WHRI+
Sbjct: 29 SLNRVQLLGRVGQDPVMRQVEGKNPDTIFSLATNEMWRSGENETYQMGDVSQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+R L + QY+KKGS+IY+EG++ ++T+K V + T +IADN+ L +
Sbjct: 89 VFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYTDKNNVRRQATTIIADNIIFLSDQ 143
>UNIPROTKB|E7EUY5 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9606 "Homo sapiens" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0070584 "mitochondrion morphogenesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0005739
GO:GO:0006260 GO:GO:0003697 EMBL:AC004918 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 HGNC:HGNC:11317 ChiTaRS:SSBP1 EMBL:AC004979
IPI:IPI01014556 SMR:E7EUY5 Ensembl:ENST00000467681
Ensembl:ENST00000576311 Uniprot:E7EUY5
Length = 135
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 41/107 (38%), Positives = 66/107 (61%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNS-----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR +S G+ + T WHRI+
Sbjct: 29 SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD 103
+R L + QY+KKGS+IY+EG++ ++ +K V + T +IAD
Sbjct: 89 VFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIAD 135
>RGD|3760 [details] [associations]
symbol:Ssbp1 "single-stranded DNA binding protein 1, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
evidence=IEA;ISO] [GO:0003697 "single-stranded DNA binding"
evidence=IEA;NAS] [GO:0005739 "mitochondrion" evidence=ISO;NAS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=IEA;ISO] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA;ISO] [GO:0070584
"mitochondrion morphogenesis" evidence=IEA;ISO] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
RGD:3760 GO:GO:0005739 GO:GO:0006260 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG0629 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 HOVERGEN:HBG001181 KO:K03111 CTD:6742
HOGENOM:HOG000106484 OrthoDB:EOG4KSPM4 EMBL:M94557 EMBL:AF043635
EMBL:AF043630 EMBL:AF043631 EMBL:AF043632 EMBL:AF043633 EMBL:AF043634
IPI:IPI00196750 PIR:JN0569 RefSeq:NP_899157.1 UniGene:Rn.106922
ProteinModelPortal:P28042 SMR:P28042 IntAct:P28042 STRING:P28042
PRIDE:P28042 GeneID:54304 KEGG:rno:54304 UCSC:RGD:3760
InParanoid:P28042 NextBio:610960 ArrayExpress:P28042
Genevestigator:P28042 GermOnline:ENSRNOG00000012100 Uniprot:P28042
Length = 151
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 40/115 (34%), Positives = 70/115 (60%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNS-----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR ++ G+ + T WHRI+
Sbjct: 29 SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDNEAYQMGDVSQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+R L + QY+KKG++I++EG++ ++ +K V + T +IADN+ L +
Sbjct: 89 VFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNNVRRQATTIIADNIIFLSDQ 143
>UNIPROTKB|P28042 [details] [associations]
symbol:Ssbp1 "Single-stranded DNA-binding protein,
mitochondrial" species:10116 "Rattus norvegicus" [GO:0003682
"chromatin binding" evidence=IEA] [GO:0042645 "mitochondrial
nucleoid" evidence=IEA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 RGD:3760
GO:GO:0005739 GO:GO:0006260 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG0629 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 HOVERGEN:HBG001181 KO:K03111 CTD:6742
HOGENOM:HOG000106484 OrthoDB:EOG4KSPM4 EMBL:M94557 EMBL:AF043635
EMBL:AF043630 EMBL:AF043631 EMBL:AF043632 EMBL:AF043633
EMBL:AF043634 IPI:IPI00196750 PIR:JN0569 RefSeq:NP_899157.1
UniGene:Rn.106922 ProteinModelPortal:P28042 SMR:P28042
IntAct:P28042 STRING:P28042 PRIDE:P28042 GeneID:54304
KEGG:rno:54304 UCSC:RGD:3760 InParanoid:P28042 NextBio:610960
ArrayExpress:P28042 Genevestigator:P28042
GermOnline:ENSRNOG00000012100 Uniprot:P28042
Length = 151
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 40/115 (34%), Positives = 70/115 (60%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNS-----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR ++ G+ + T WHRI+
Sbjct: 29 SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDNEAYQMGDVSQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+R L + QY+KKG++I++EG++ ++ +K V + T +IADN+ L +
Sbjct: 89 VFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNNVRRQATTIIADNIIFLSDQ 143
>UNIPROTKB|P09380 [details] [associations]
symbol:ssbp1-a "Single-stranded DNA-binding protein 1-A,
mitochondrial" species:8355 "Xenopus laevis" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0042645 "mitochondrial nucleoid"
evidence=ISS] InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003682
GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 EMBL:X59285
EMBL:X83673 EMBL:BC082205 PIR:JC6173 RefSeq:NP_001095241.1
UniGene:Xl.35184 ProteinModelPortal:P09380 SMR:P09380 GeneID:397915
KEGG:xla:397915 CTD:397915 Xenbase:XB-GENE-6252172
HOVERGEN:HBG001181 Uniprot:P09380
Length = 146
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 41/113 (36%), Positives = 67/113 (59%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNS------GEKRELTEWHRI 56
S+NKV ++G +G+DP R + VT S+AT E WR S G+ + T WHRI
Sbjct: 27 SINKVQLLGRVGQDPVMRQAEGKNPVTIFSLATNELWRSGESETFHTAGDVNQKTTWHRI 86
Query: 57 TFYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQML 108
+ +R L + Q++KKG+++ +EG++ ++T+K V + T +IADN+ L
Sbjct: 87 SVFRPGLRDVAYQHVKKGARLLVEGKIDYGEYTDKNNVRRQATTIIADNIIFL 139
>UNIPROTKB|P09381 [details] [associations]
symbol:ssbp1-b "Single-stranded DNA-binding protein 1-B,
mitochondrial" species:8355 "Xenopus laevis" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0042645 "mitochondrial nucleoid"
evidence=ISS] InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003682
GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
HOVERGEN:HBG001181 EMBL:X83674 EMBL:BC133265 PIR:JC6172
RefSeq:NP_001091326.1 UniGene:Xl.75198 ProteinModelPortal:P09381
SMR:P09381 GeneID:100037159 KEGG:xla:100037159 CTD:100037159
Xenbase:XB-GENE-979715 KO:K03111 Uniprot:P09381
Length = 148
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 40/113 (35%), Positives = 69/113 (61%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRD-KN-----SGEKRELTEWHRI 56
S+NKV ++G +G+DP R + VT S+AT E WR +N +G+ + T WHR+
Sbjct: 29 SMNKVQLLGRVGQDPVMRQADGKNPVTIFSLATNELWRSGENEVFQPAGDVNQKTTWHRV 88
Query: 57 TFYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQML 108
+ +R L + Q++KKG+++ +EG++ ++T+K V + T +IADN+ L
Sbjct: 89 SVFRPGLRDVAYQHVKKGARLLVEGKIDYGEYTDKNNVRRQATTIIADNIIFL 141
>TIGR_CMR|CHY_0036 [details] [associations]
symbol:CHY_0036 "single-strand binding protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106484 RefSeq:YP_358908.1 ProteinModelPortal:Q3AG26
STRING:Q3AG26 GeneID:3727130 KEGG:chy:CHY_0036 PATRIC:21273269
OMA:ETICQPR BioCyc:CHYD246194:GJCN-36-MONOMER Uniprot:Q3AG26
Length = 143
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 40/104 (38%), Positives = 66/104 (63%)
Query: 5 NKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQ 64
NKVI+IG L RDPE R+ G V ++++A + K +RE T++ + ++KLA+
Sbjct: 3 NKVILIGRLTRDPELRHTPQGTPVASITVAVDRPFTTKEG--QRE-TDFIDVVVWQKLAE 59
Query: 65 IVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQML 108
V + L KG + +EGRLQ R +T+KEG ++ + EV+ +N++ L
Sbjct: 60 TVARVLTKGRLVMVEGRLQIRSYTDKEGQKRRVYEVVGENVRFL 103
>MGI|MGI:1920040 [details] [associations]
symbol:Ssbp1 "single-stranded DNA binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0042645 "mitochondrial nucleoid" evidence=ISO]
[GO:0051096 "positive regulation of helicase activity"
evidence=ISO] [GO:0070584 "mitochondrion morphogenesis"
evidence=IMP] InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 MGI:MGI:1920040 GO:GO:0006260
GO:GO:0003682 GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584 GO:GO:0051096
eggNOG:COG0629 GeneTree:ENSGT00390000002796 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 HOVERGEN:HBG001181 KO:K03111 CTD:6742
HOGENOM:HOG000106484 OMA:ITYGEIT EMBL:AK013425 IPI:IPI00111877
RefSeq:NP_082634.1 RefSeq:NP_997633.1 UniGene:Mm.276356
UniGene:Mm.393562 ProteinModelPortal:Q9CYR0 SMR:Q9CYR0
STRING:Q9CYR0 PhosphoSite:Q9CYR0 PaxDb:Q9CYR0 PRIDE:Q9CYR0
Ensembl:ENSMUST00000031971 GeneID:381760 KEGG:mmu:381760
UCSC:uc009bmr.1 InParanoid:Q9CYR0 NextBio:402511 Bgee:Q9CYR0
CleanEx:MM_SSBP1 Genevestigator:Q9CYR0
GermOnline:ENSMUSG00000029911 Uniprot:Q9CYR0
Length = 152
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 38/106 (35%), Positives = 65/106 (61%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNS-----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR +S G+ + T WHRI+
Sbjct: 29 SLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSEVYQMGDVSQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIA 102
+R L + QY+KKG++I++EG++ ++ +K V + T +IA
Sbjct: 89 VFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNNVRRQATTIIA 134
>FB|FBgn0010438 [details] [associations]
symbol:mtSSB "mitochondrial single stranded DNA-binding
protein" species:7227 "Drosophila melanogaster" [GO:0003697
"single-stranded DNA binding" evidence=ISS;NAS;IDA] [GO:0005739
"mitochondrion" evidence=ISS;NAS;IDA] [GO:0000002 "mitochondrial
genome maintenance" evidence=NAS;IMP] [GO:0000262 "mitochondrial
chromosome" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 EMBL:AE014297 GO:GO:0000262
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006264 eggNOG:COG0629 GeneTree:ENSGT00390000002796
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 EMBL:AF181084
EMBL:BT016028 EMBL:U00669 RefSeq:NP_001034057.1 RefSeq:NP_536744.2
UniGene:Dm.5334 ProteinModelPortal:P54622 SMR:P54622 DIP:DIP-22042N
MINT:MINT-330179 STRING:P54622 PaxDb:P54622
EnsemblMetazoa:FBtr0083277 EnsemblMetazoa:FBtr0100152 GeneID:41968
KEGG:dme:Dmel_CG4337 CTD:41968 FlyBase:FBgn0010438
InParanoid:P54622 OMA:ITYGEIT OrthoDB:EOG4WDBVD PhylomeDB:P54622
GenomeRNAi:41968 NextBio:826517 Bgee:P54622 GermOnline:CG4337
Uniprot:P54622
Length = 146
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 36/104 (34%), Positives = 64/104 (61%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR-K 61
+VN V I+G +G DP+ R VT S+AT N++ +N G+ + T+WHR+ ++
Sbjct: 37 TVNTVTILGRVGADPQLRGSQEHPVVT-FSVATHTNYKYEN-GDWAQRTDWHRVVVFKPN 94
Query: 62 LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNM 105
L V +YLKKG + ++G++ + T+++G +K T +IAD++
Sbjct: 95 LRDTVLEYLKKGQRTMVQGKITYGEITDQQGNQKTSTSIIADDV 138
>UNIPROTKB|C9K0U8 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9606 "Homo sapiens" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0070584 "mitochondrion morphogenesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0005739
GO:GO:0006260 GO:GO:0003697 EMBL:AC004918 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 HOGENOM:HOG000106484 HGNC:HGNC:11317
ChiTaRS:SSBP1 EMBL:AC004979 IPI:IPI00947310 SMR:C9K0U8
STRING:C9K0U8 Ensembl:ENST00000463093 Ensembl:ENST00000571709
Uniprot:C9K0U8
Length = 121
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNS-----GEKRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR +S G+ + T WHRI+
Sbjct: 29 SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRIS 88
Query: 58 FYRK-LAQIVKQYLKKGSQIYIEGRL 82
+R L + QY+KKGS+IY+EG++
Sbjct: 89 VFRPGLRDVAYQYVKKGSRIYLEGKI 114
>TIGR_CMR|BA_2168 [details] [associations]
symbol:BA_2168 "single-stranded DNA-binding protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HOGENOM:HOG000106484
HSSP:P02339 RefSeq:NP_844562.1 RefSeq:YP_018810.1
RefSeq:YP_028276.1 ProteinModelPortal:Q81R86 DNASU:1085755
EnsemblBacteria:EBBACT00000008719 EnsemblBacteria:EBBACT00000018540
EnsemblBacteria:EBBACT00000020412 GeneID:1085755 GeneID:2815825
GeneID:2849466 KEGG:ban:BA_2168 KEGG:bar:GBAA_2168 KEGG:bat:BAS2013
OMA:ARICVAV ProtClustDB:PRK06752
BioCyc:BANT260799:GJAJ-2081-MONOMER
BioCyc:BANT261594:GJ7F-2161-MONOMER Uniprot:Q81R86
Length = 112
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 36/108 (33%), Positives = 62/108 (57%)
Query: 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLA 63
+N+V++IG L ++PE Y G A V +A +R+ + GE++ ++ +RK A
Sbjct: 2 MNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRN-SLGEQQ--VDFINCVVWRKSA 58
Query: 64 QIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSR 111
+ V +Y KGS + I GR+ TR + + +G YITEV+ +++ L R
Sbjct: 59 ENVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106
>UNIPROTKB|P0A610 [details] [associations]
symbol:ssb "Single-stranded DNA-binding protein"
species:1773 "Mycobacterium tuberculosis" [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0005576
"extracellular region" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0046677 "response to antibiotic" evidence=IEP]
[GO:0051289 "protein homotetramerization" evidence=IPI]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0005886 GO:GO:0005576
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0046677 EMBL:BX842572
GO:GO:0006974 GO:GO:0051289 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG0629 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 HOGENOM:HOG000106485 KO:K03111 PIR:F70913
RefSeq:NP_214568.1 RefSeq:NP_334468.1 RefSeq:YP_006513368.1
PDB:1UE1 PDB:1UE5 PDB:1UE6 PDB:1UE7 PDBsum:1UE1 PDBsum:1UE5
PDBsum:1UE6 PDBsum:1UE7 ProteinModelPortal:P0A610 SMR:P0A610
PRIDE:P0A610 EnsemblBacteria:EBMYCT00000003600
EnsemblBacteria:EBMYCT00000069358 GeneID:13316032 GeneID:887013
GeneID:922722 KEGG:mtc:MT0060 KEGG:mtu:Rv0054 KEGG:mtv:RVBD_0054
PATRIC:18121853 TubercuList:Rv0054 OMA:IATSENW ProtClustDB:PRK07772
EvolutionaryTrace:P0A610 Uniprot:P0A610
Length = 164
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 34/106 (32%), Positives = 62/106 (58%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTE-WHRITFY 59
MA + I+GNL DPE R+ +G AV N ++A+T D+ +GE ++ + R +
Sbjct: 1 MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIW 60
Query: 60 RKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNM 105
R+ A+ V + L +G+++ + GRL+ R + +EG ++ + EV D +
Sbjct: 61 REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEI 106
>TAIR|locus:2086889 [details] [associations]
symbol:AT3G18580 species:3702 "Arabidopsis thaliana"
[GO:0003697 "single-stranded DNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0005739 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006260
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AP001303 PANTHER:PTHR10302 KO:K03111 HOGENOM:HOG000238117
IPI:IPI00539604 RefSeq:NP_188488.1 UniGene:At.53373
ProteinModelPortal:Q9LII1 SMR:Q9LII1 PaxDb:Q9LII1 PRIDE:Q9LII1
EnsemblPlants:AT3G18580.1 GeneID:821389 KEGG:ath:AT3G18580
TAIR:At3g18580 eggNOG:NOG325004 InParanoid:Q9LII1 OMA:DREEPHQ
PhylomeDB:Q9LII1 ProtClustDB:CLSN2684390 Genevestigator:Q9LII1
Uniprot:Q9LII1
Length = 217
Score = 127 (49.8 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 33/109 (30%), Positives = 59/109 (54%)
Query: 2 ASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIAT---TENWR-----DKNSGEKRELTEW 53
+ + K I++G +G+ P + + +G VT S+ T N R D R +W
Sbjct: 78 SGIFKAILVGQVGQLPLQKKLKSGRTVTLFSVGTGGIRNNRRPLINEDPREYASRSAVQW 137
Query: 54 HRITFY-RKLAQIVKQYLKKGSQIYIEGRLQTRKWTNK-EGVEKYITEV 100
HR++ Y +LA +V + ++ G+ IY+EG L+T+ +T+ G+ + I EV
Sbjct: 138 HRVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIREV 186
>WB|WBGene00019800 [details] [associations]
symbol:mtss-1 species:6239 "Caenorhabditis elegans"
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 EMBL:FO081577 GO:GO:0042645 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 PIR:S44857
RefSeq:NP_498935.1 ProteinModelPortal:P34496 SMR:P34496
DIP:DIP-25867N IntAct:P34496 MINT:MINT-1058111 STRING:P34496
PaxDb:P34496 EnsemblMetazoa:PAR2.1.1 EnsemblMetazoa:PAR2.1.2
GeneID:187502 KEGG:cel:CELE_PAR2.1 CTD:187502 WormBase:PAR2.1
eggNOG:COG0629 GeneTree:ENSGT00390000002796 HOGENOM:HOG000018139
InParanoid:P34496 OMA:CMSLTSK NextBio:935490 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 Uniprot:P34496
Length = 170
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/108 (29%), Positives = 60/108 (55%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
SVNKV ++G + DP + NG +I T ++ ++ G + TE H ++ + K
Sbjct: 53 SVNKVELVGGVALDPLYKTGRNGKPYLIFNIITNSYFKQQD-GTTLDQTERHAVSVFGKQ 111
Query: 63 AQIVKQYLKKGSQIYIEGRLQ-TRKWTNKEGVE-KYITEVIADNMQML 108
A+I+ + +KKGS++ ++GRL + +++G + T +IA +Q L
Sbjct: 112 AEILSKTIKKGSRLMVQGRLHYSGGQKDEQGNRTQRNTYIIAQTVQPL 159
>TAIR|locus:2136083 [details] [associations]
symbol:MTSSB "mitochondrially targeted single-stranded
DNA binding protein" species:3702 "Arabidopsis thaliana"
[GO:0003697 "single-stranded DNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0005739 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AF080120
EMBL:AL049876 EMBL:AL161518 PANTHER:PTHR10302 EMBL:BT004166
EMBL:BT005015 IPI:IPI00534596 PIR:T08185 RefSeq:NP_192844.2
UniGene:At.33588 ProteinModelPortal:Q84J78 SMR:Q84J78 PaxDb:Q84J78
PRIDE:Q84J78 EnsemblPlants:AT4G11060.1 GeneID:826707
KEGG:ath:AT4G11060 GeneFarm:4154 TAIR:At4g11060 eggNOG:NOG329313
HOGENOM:HOG000238117 InParanoid:Q84J78 OMA:AQWHRIA PhylomeDB:Q84J78
ProtClustDB:CLSN2690856 Genevestigator:Q84J78 GermOnline:AT4G11060
Uniprot:Q84J78
Length = 201
Score = 118 (46.6 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 30/101 (29%), Positives = 51/101 (50%)
Query: 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKREL--TEWHRITFYRK 61
V++ II G +G+ P + + NG VT ++ T + + G + +WHRI + +
Sbjct: 71 VHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPKPAQWHRIAVHNE 130
Query: 62 -LAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVE-KYITEV 100
L Q L K S +Y+EG ++TR + + E K I E+
Sbjct: 131 VLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEI 171
>UNIPROTKB|Q48AK8 [details] [associations]
symbol:CPS_0137 "Single-strand binding protein family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000424 Pfam:PF00436
PROSITE:PS50935 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 RefSeq:YP_266905.1 ProteinModelPortal:Q48AK8
STRING:Q48AK8 GeneID:3521605 KEGG:cps:CPS_0137 PATRIC:21463689
BioCyc:CPSY167879:GI48-240-MONOMER Uniprot:Q48AK8
Length = 232
Score = 119 (46.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 7 VIIIGNLGRDPETRYMSN-GDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQI 65
V ++GNL P+ RY +N AVT + +AT+ W DK + + +E T +H + +L ++
Sbjct: 21 VTLLGNLVATPDIRYRANPATAVTEIVLATSSKWLDKITNKYKEWTSYHHVKVEGELVEL 80
Query: 66 VKQYLKKGSQIYIEGRLQTRK 86
KG I + G L K
Sbjct: 81 ALLNANKGDIILLHGYLSNIK 101
>TIGR_CMR|CPS_0137 [details] [associations]
symbol:CPS_0137 "single-strand binding protein family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000424 Pfam:PF00436
PROSITE:PS50935 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 RefSeq:YP_266905.1 ProteinModelPortal:Q48AK8
STRING:Q48AK8 GeneID:3521605 KEGG:cps:CPS_0137 PATRIC:21463689
BioCyc:CPSY167879:GI48-240-MONOMER Uniprot:Q48AK8
Length = 232
Score = 119 (46.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 7 VIIIGNLGRDPETRYMSN-GDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQI 65
V ++GNL P+ RY +N AVT + +AT+ W DK + + +E T +H + +L ++
Sbjct: 21 VTLLGNLVATPDIRYRANPATAVTEIVLATSSKWLDKITNKYKEWTSYHHVKVEGELVEL 80
Query: 66 VKQYLKKGSQIYIEGRLQTRK 86
KG I + G L K
Sbjct: 81 ALLNANKGDIILLHGYLSNIK 101
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 171 135 0.00091 102 3 11 22 0.45 31
30 0.44 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 553 (59 KB)
Total size of DFA: 134 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 12.91u 0.07s 12.98t Elapsed: 00:00:24
Total cpu time: 12.92u 0.07s 12.99t Elapsed: 00:00:27
Start: Thu Aug 15 12:58:40 2013 End: Thu Aug 15 12:59:07 2013