RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14498
(171 letters)
>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus
radiodurans [TaxId: 1299]}
Length = 231
Score = 135 bits (340), Expect = 8e-41
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
+N V +IG L RDPE RY NG AV ++A + + G +R L +HR++ K
Sbjct: 2 GMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGND-GRERNLPWYHRVSILGKP 60
Query: 63 AQIV-KQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNEKNISN 121
A+ ++ LK G + +EG L+ R+W EG ++ V A M+ LG++ +
Sbjct: 61 AEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGG 120
Query: 122 NLENNFFNIM 131
+ N +
Sbjct: 121 VRMSGAMNEV 130
Score = 120 bits (301), Expect = 7e-35
Identities = 41/109 (37%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 1 MASVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYR 60
++N+V+++GN+ RDPE RY GDAV ++SIA EN++D+ G+++E + T +R
Sbjct: 124 SGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQ-GQRQEKVHYIDATLWR 182
Query: 61 KLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLG 109
LA+ + + L+KG + I GRL WT+K+G ++ T V A ++ L
Sbjct: 183 DLAENM-KELRKGDPVMIMGRLVNEGWTDKDGNKRNSTRVEATRVEALA 230
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli
[TaxId: 562]}
Length = 145
Score = 118 bits (297), Expect = 2e-35
Identities = 66/123 (53%), Positives = 92/123 (74%), Gaps = 3/123 (2%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
VNKVI++GNLG+DPE RYM NG AV N+++AT+E+WRDK +GE +E TEWHR+ + KL
Sbjct: 4 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKL 63
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIAD---NMQMLGSRKNTNEKNI 119
A++ +YL+KGSQ+YIEG+L+TRKWT++ G ++Y TEV+ + MQMLG R+
Sbjct: 64 AEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAG 123
Query: 120 SNN 122
N
Sbjct: 124 GNI 126
>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 118
Score = 110 bits (276), Expect = 1e-32
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 4 VNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWH-RITFYRKL 62
+ I+GNL DPE R+ +G AV N ++A+T D+ +GE ++ R +R+
Sbjct: 2 DTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREA 61
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNM----QMLGSRKN 113
A+ V + L +G+++ + GRL+ R + +EG ++ + EV D + + ++ N
Sbjct: 62 AENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVN 116
>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB
{Escherichia coli [TaxId: 562]}
Length = 111
Score = 104 bits (260), Expect = 4e-30
Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKL 62
N++++ G + R P + +G + + +G R+ +
Sbjct: 5 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEH--RSVQEEAGFHRQAWCQMPVIVSGHE 62
Query: 63 AQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNT 114
Q + + GS+I ++G + K N + A+ ++++ S
Sbjct: 63 NQAITHSITVGSRITVQGFISCHKAKNGLSK----MVLHAEQIELIDSVDKL 110
>d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens),
mitochondria [TaxId: 9606]}
Length = 115
Score = 98.7 bits (245), Expect = 5e-28
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 6/112 (5%)
Query: 3 SVNKVIIIGNLGRDPETRYMSNGDAVTNVSIATTENWRDKNSGE-----KRELTEWHRIT 57
S+N+V ++G +G+DP R + + VT S+AT E WR +S + T WHRI+
Sbjct: 4 SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRIS 63
Query: 58 -FYRKLAQIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQML 108
F L + QY+KKGS+IY+EG++ ++ +K V + T +IADN+ L
Sbjct: 64 VFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFL 115
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 101
Score = 27.9 bits (62), Expect = 0.27
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 70 LKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTN 115
+ G IY++ + + + + + + N + S K N
Sbjct: 50 ISAGRIIYVDDGVLSFQVLEVVDDKTLKVKAL--NAGKICSHKGVN 93
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 26.9 bits (58), Expect = 1.4
Identities = 11/63 (17%), Positives = 20/63 (31%)
Query: 25 GDAVTNVSIATTENWRDKNSGEKRELTEWHRITFYRKLAQIVKQYLKKGSQIYIEGRLQT 84
G V + +A E W + + + W A V+ L + Y+ +
Sbjct: 175 GYDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYAREC 234
Query: 85 RKW 87
W
Sbjct: 235 FGW 237
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 275
Score = 26.7 bits (58), Expect = 1.6
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 59 YRKLAQIVKQYLKKGSQIYIEGRLQTRK 86
+ Q KQ S + +E ++ + K
Sbjct: 243 VSAIQQTTKQIYDDQSLVNVEDKIVSVK 270
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK
{Thermotoga maritima [TaxId: 2336]}
Length = 271
Score = 25.2 bits (54), Expect = 4.3
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 53 WHRITFYRKLAQIVKQYLKKGSQIYIE 79
+ FYR+ +Y G + +E
Sbjct: 212 EDGLDFYRE---FFGRYDTSGKIVLME 235
>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide
transhydrogenase dI component {Rhodospirillum rubrum
[TaxId: 1085]}
Length = 194
Score = 25.1 bits (54), Expect = 4.3
Identities = 7/89 (7%), Positives = 25/89 (28%)
Query: 64 QIVKQYLKKGSQIYIEGRLQTRKWTNKEGVEKYITEVIADNMQMLGSRKNTNEKNISNNL 123
++VK+ + G ++ +E + + + + Q L +
Sbjct: 21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTA 80
Query: 124 ENNFFNIMSARKNYTSNTNNEKEKSKENF 152
E + ++ + ++
Sbjct: 81 EEGTDEVALIKEGAVLMCHLGALTNRPVV 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.359
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 604,520
Number of extensions: 25749
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 17
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.6 bits)