BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14499
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 279 bits (713), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 129/262 (49%), Positives = 176/262 (67%), Gaps = 1/262 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMDTYS T+PG+VTGKPI++GGS GR+ ATGRGVFI
Sbjct: 162 MAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAAAEKIGLQVEGAR 221
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
QGFGNVG+ AA F GA++VA+QD T+YN G + L ++V ++ + +
Sbjct: 222 VAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPK 281
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E + + +FW +P + L+PAA+E QIT NA + A+I+ EGANGPTT ADDIL +KG
Sbjct: 282 AEPL-PAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTTPAADDILLEKG 340
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+++ PDVI NAGGV VSYFEWVQ+ ++ WTE+EIN RL ++ NAF+A+W++A KK+
Sbjct: 341 VLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEAVWQVAQEKKIP 400
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAA+++ TRVL+A RGL
Sbjct: 401 LRTAAYVVAATRVLEARALRGL 422
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 129/262 (49%), Positives = 176/262 (67%), Gaps = 1/262 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMDTYS T+PG+VTGKPI++GGS GR+ ATGRGVFI
Sbjct: 178 MAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAAAEKIGLQVEGAR 237
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
QGFGNVG+ AA F GA++VA+QD T+YN G + L ++V ++ + +
Sbjct: 238 VAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPK 297
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E + + +FW +P + L+PAA+E QIT NA + A+I+ EGANGPTT ADDIL +KG
Sbjct: 298 AEPL-PAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTTPAADDILLEKG 356
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+++ PDVI NAGGV VSYFEWVQ+ ++ WTE+EIN RL ++ NAF+A+W++A KK+
Sbjct: 357 VLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEAVWQVAQEKKIP 416
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAA+++ TRVL+A RGL
Sbjct: 417 LRTAAYVVAATRVLEARALRGL 438
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/263 (42%), Positives = 162/263 (61%), Gaps = 2/263 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
++W MDTYS +T+ GIVTGKP+ +GGS GR++ATGRGV +
Sbjct: 152 IAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKAT 211
Query: 61 XXXQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 119
QGFGNVG AA L + G+K+VA+ D + IYNP GF++ +L +Y ++ +
Sbjct: 212 VAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYP 271
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+GE+I + +E + DIL+PAA+E I NA + AK ++EGANGPTT EAD+IL +
Sbjct: 272 KGERITN-EELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRR 330
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
GI++ PD++ NAGGV VSYFEWVQ+L + W ++ L ++ AF+ + ++ V
Sbjct: 331 GILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKKAFNDVMKVKEKYNV 390
Query: 240 SLRTAAFIIGCTRVLQAHKTRGL 262
+RTAA+I+ RV A K RG+
Sbjct: 391 DMRTAAYILAIDRVAYATKKRGI 413
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/263 (42%), Positives = 162/263 (61%), Gaps = 2/263 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
++W MDTYS +T+ GIVTGKP+ +GGS GR++ATGRGV +
Sbjct: 153 IAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKAT 212
Query: 61 XXXQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 119
QGFGNVG AA L + G+K+VA+ D + IYNP GF++ +L +Y ++ +
Sbjct: 213 VAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYP 272
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+GE+I + +E + DIL+PAA+E I NA + AK ++EGANGPTT EAD+IL +
Sbjct: 273 KGERITN-EELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRR 331
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
GI++ PD++ NAGGV VSYFEWVQ+L + W ++ L ++ AF+ + ++ V
Sbjct: 332 GILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNV 391
Query: 240 SLRTAAFIIGCTRVLQAHKTRGL 262
+RTAA+I+ RV A K RG+
Sbjct: 392 DMRTAAYILAIDRVAYATKKRGI 414
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 160/263 (60%), Gaps = 2/263 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
++W MD Y +T+ GIVTGKP+ +GGS GR++ATGRGV +
Sbjct: 152 IAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKAT 211
Query: 61 XXXQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 119
QGFGNVG AA L + G+K+VA+ D + IYNP GF++ +L +Y ++ +
Sbjct: 212 VAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYP 271
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+GE+I + +E + DIL+PAA+E I NA + AK ++EGANGPTT EAD+IL +
Sbjct: 272 KGERITN-EELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRR 330
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
GI++ PD++ NAGGV VSYFEWVQ+L + W ++ L ++ AF+ + ++ V
Sbjct: 331 GILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNV 390
Query: 240 SLRTAAFIIGCTRVLQAHKTRGL 262
+RTAA+I+ RV A K RG+
Sbjct: 391 DMRTAAYILAIDRVAYATKKRGI 413
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|B Chain B, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|C Chain C, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|D Chain D, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|E Chain E, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|F Chain F, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
Length = 424
Score = 217 bits (553), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/262 (41%), Positives = 158/262 (60%), Gaps = 4/262 (1%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMD YS + + PG +TGKP+ +GGS GR+ AT +GV I
Sbjct: 164 MAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVTICIEEAVKKKGIKLQNAR 223
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL-QKYVTFTRSIKDFN 119
QGFGN GS A AGAK++ I D +YNP+G +IP L K +F F
Sbjct: 224 IIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFT 283
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+ + ++E CDIL+PAAI +QIT NA+N+ A I++E ANGPTT +A IL ++
Sbjct: 284 D---VITNEELLEKDCDILVPAAISNQITAKNAHNIQASIVVERANGPTTIDATKILNER 340
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
G++L PD++ +AGGV VSYFEWVQN W+E+E+ +L +++ ++F+ I++ A T KV
Sbjct: 341 GVLLVPDILASAGGVTVSYFEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKV 400
Query: 240 SLRTAAFIIGCTRVLQAHKTRG 261
+R AA++ G + +A + RG
Sbjct: 401 DMRLAAYMTGIRKSAEASRFRG 422
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 214 bits (544), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/262 (42%), Positives = 159/262 (60%), Gaps = 4/262 (1%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMD YS + PG +TGKP+ +GGS GR+ AT +GV I
Sbjct: 163 MAWMMDEYSRIDEFNSPGFITGKPLVLGGSHGRESATAKGVTICIKEAAKKRGIDIKGAR 222
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL-QKYVTFTRSIKDFN 119
QGFGN GS A AGAK+V I D +Y+P G +I L + +F K FN
Sbjct: 223 VVVQGFGNAGSYLAKFMHDAGAKVVGISDAYGGLYDPEGLDIDYLLDRRDSFGTVTKLFN 282
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+ ++E + CDIL+PAAIE+QIT NA+N+ AKI++E ANGPTT E IL D+
Sbjct: 283 D---TITNQELLELDCDILVPAAIENQITEENAHNIRAKIVVEAANGPTTLEGTKILSDR 339
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
I+L PDV+ +AGGV VSYFEWVQN W+E+E+ +L ++ +F+ I+E+AN +++
Sbjct: 340 DILLVPDVLASAGGVTVSYFEWVQNNQGFYWSEEEVEEKLEKMMVKSFNNIYEMANNRRI 399
Query: 240 SLRTAAFIIGCTRVLQAHKTRG 261
+R AA+++G ++ +A + RG
Sbjct: 400 DMRLAAYMVGVRKMAEASRFRG 421
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 209 bits (533), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 155/267 (58%), Gaps = 10/267 (3%)
Query: 1 MSWMMDTYSTKKNYTIP--GIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXX 58
M WMMD Y T P G++TGKP+SIGGS GR AT +G
Sbjct: 153 MGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKG 212
Query: 59 XXXXXQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117
QG+GN G A L + G +VA+ D + IYNP+G + ++ K+ S+KD
Sbjct: 213 KKIAVQGYGNAGYYTAKLAKEQLGMTVVAVSDSRGGIYNPDGLDPDEVLKWKREHGSVKD 272
Query: 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILR 177
F I + +E + D+L PAAIE+ IT NA+N+ AKI+ E ANGP T EADDILR
Sbjct: 273 FPGATNITN-EELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGPVTPEADDILR 331
Query: 178 DKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTK 237
+KGI+ PD + NAGGV VSYFEWVQN++ WTE+E+ +L+ + AF WE+ NT
Sbjct: 332 EKGILQIPDFLCNAGGVTVSYFEWVQNINGYYWTEEEVREKLDKKMTKAF---WEVYNTH 388
Query: 238 K---VSLRTAAFIIGCTRVLQAHKTRG 261
K + +R AA+++ +RV QA K RG
Sbjct: 389 KDKNIHMRDAAYVVAVSRVYQAMKDRG 415
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/265 (43%), Positives = 155/265 (58%), Gaps = 5/265 (1%)
Query: 1 MSWMMDTYSTKKNYTIP--GIVTGKPISIGGSFGRQKATGRGV-FIIGXXXXXXXXXXXX 57
M+WMMD Y T P GI+TGKP+SIGGS GR +AT RG + I
Sbjct: 152 MAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARGASYTIREAAKVLGWDTLK 211
Query: 58 XXXXXXQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116
QG+GN G A + + G K+VA+ D K IYNP+G N ++ K+ S+K
Sbjct: 212 GKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVK 271
Query: 117 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDIL 176
DF I + +E + D+L PAAIE+ IT NA+N+ AKI+ E ANGP T EAD+IL
Sbjct: 272 DFPGATNITN-EELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEIL 330
Query: 177 RDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT 236
+KGI+ PD + NAGGV VSYFEWVQN++ WT +E+ RL+ + AF ++ +A
Sbjct: 331 FEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKE 390
Query: 237 KKVSLRTAAFIIGCTRVLQAHKTRG 261
K + +R AA+++ RV QA RG
Sbjct: 391 KNIHMRDAAYVVAVQRVYQAMLDRG 415
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/267 (41%), Positives = 154/267 (57%), Gaps = 10/267 (3%)
Query: 1 MSWMMDTYSTKKNYTIP--GIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXX 58
M+WMMD Y T P G++TGKP S+GG R AT RG
Sbjct: 152 MAWMMDEYETISRRKDPSFGVITGKPPSVGGIVARMDATARGASYTVREAAKALGMDLKG 211
Query: 59 XXXXXQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117
QG+GN G A + + G K+VA+ D K IYNP+G N ++ + T S+KD
Sbjct: 212 KTIAIQGYGNAGYYMAKIMSEEYGMKVVAVSDTKGGIYNPDGLNADEVLAWKKKTGSVKD 271
Query: 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILR 177
F I + +E + D+L P+AIE+ IT NA+N+ AKI+ E ANGPTT EAD+IL
Sbjct: 272 FPGATNITN-EELLELEVDVLAPSAIEEVITKKNADNIKAKIVAELANGPTTPEADEILY 330
Query: 178 DKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTK 237
+KGI++ PD + NAGGV VSYFEWVQN++ WT +E +L+ + AF W++ NT
Sbjct: 331 EKGILIIPDFLCNAGGVTVSYFEWVQNITGDYWTVEETRAKLDKKMTKAF---WDVYNTH 387
Query: 238 K---VSLRTAAFIIGCTRVLQAHKTRG 261
K +++R AA+++ +RV QA K RG
Sbjct: 388 KEKNINMRDAAYVVAVSRVYQAMKDRG 414
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 147/267 (55%), Gaps = 6/267 (2%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WM+D YS K Y +PG+ T KP + G+ R+ ATG GV +
Sbjct: 153 MAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVAVATREMAKKLWGGIEGKT 212
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDF 118
QG GNVG A K GAK++A+ D Y G N+ +QK T ++ F
Sbjct: 213 VAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELF 272
Query: 119 ---NEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDI 175
+ E + + + + DI +PAAIE+ I +NA V A++++EGANGPTT EA+ I
Sbjct: 273 TTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAERI 332
Query: 176 LRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELAN 235
L ++G+++ PD++ NAGGVI+SY EWV+NL +W E+E RL NI+ N + +++
Sbjct: 333 LYERGVVVVPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVYKRWQ 392
Query: 236 TKK-VSLRTAAFIIGCTRVLQAHKTRG 261
+K ++R AA + R+ A K RG
Sbjct: 393 REKGWTMRDAAIVTALERIYNAMKIRG 419
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
Length = 421
Score = 177 bits (448), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 145/267 (54%), Gaps = 7/267 (2%)
Query: 1 MSWMMDTYSTKKNYTIP-GIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXX 59
MSW +D Y + G TGKP++ GGS GR +ATG GV ++
Sbjct: 154 MSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVAVVVRESAKRFGIKMEDA 213
Query: 60 XXXXQGFGNVGSVAANLFFKAGAKIVAIQD-DKT----TIYNPNGFNIPKLQKYVTFTRS 114
QGFGNVG+ + G K+ AI + D+ +YN NG + +L Y ++
Sbjct: 214 KIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKT 273
Query: 115 IKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADD 174
+ F E+I D +EFW+ DI++PAA+E+ IT A + AK++ E ANGPTT E D
Sbjct: 274 LIGFPGAERITD-EEFWTKEYDIIVPAALENVITGERAKTINAKLVCEAANGPTTPEGDK 332
Query: 175 ILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELA 234
+L ++GI L PD++TN+GGV+VSY+EWVQN WTE E+ + + A ++ +A
Sbjct: 333 VLTERGINLTPDILTNSGGVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVA 392
Query: 235 NTKKVSLRTAAFIIGCTRVLQAHKTRG 261
+ V+LR A ++ + A K RG
Sbjct: 393 DEYNVTLREAVYMYAIKSIDVAMKLRG 419
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 124/221 (56%), Gaps = 13/221 (5%)
Query: 1 MSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI--------IGXXXX 49
MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 176 MSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSI 235
Query: 50 XXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109
QGFGNVG + + GAK VA+ + +I+NP+G + +L+ +
Sbjct: 236 LGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFK 295
Query: 110 TFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTT 169
+I F + + S + CDILIPAA E Q+T +NA V AKII EGANGPTT
Sbjct: 296 LQHGTILGFPKAKIYEGS--ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTT 353
Query: 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 210
EAD I ++ I++ PD+ NAGGV VSYFEW++NL+++ +
Sbjct: 354 PEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSY 394
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 123/221 (55%), Gaps = 13/221 (5%)
Query: 1 MSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI--------IGXXXX 49
MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 180 MSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSI 239
Query: 50 XXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109
QGFGNVG + + GAK +A+ + +I+NP+G + +L+ +
Sbjct: 240 LGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFK 299
Query: 110 TFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTT 169
SI F + + S CDILIPAA E Q+T +NA V AKII EGANGPTT
Sbjct: 300 LQHGSILGFPKAKPYEGS--ILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTT 357
Query: 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 210
EAD I ++ I++ PD+ NAGGV VSYFEW++NL+++ +
Sbjct: 358 PEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSY 398
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 123/221 (55%), Gaps = 13/221 (5%)
Query: 1 MSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI--------IGXXXX 49
MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 171 MSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSI 230
Query: 50 XXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109
QGFGNVG + + GAK +A+ + +I+NP+G + +L+ +
Sbjct: 231 LGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFK 290
Query: 110 TFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTT 169
SI F + + S CDILIPAA E Q+T +NA V AKII EGANGPTT
Sbjct: 291 LQHGSILGFPKAKPYEGS--ILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTT 348
Query: 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 210
EAD I ++ I++ PD+ NAGGV VSYFEW++NL+++ +
Sbjct: 349 PEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSY 389
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 123/221 (55%), Gaps = 13/221 (5%)
Query: 1 MSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI--------IGXXXX 49
MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 171 MSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSI 230
Query: 50 XXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109
QGFGNVG + + GAK +A+ + +I+NP+G + +L+ +
Sbjct: 231 LGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFK 290
Query: 110 TFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTT 169
SI F + + S CDILIPAA E Q+T +NA V AKII EGANGPTT
Sbjct: 291 LQHGSILGFPKAKPYEGS--ILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTT 348
Query: 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 210
EAD I ++ I++ PD+ NAGGV VSYFEW++NL+++ +
Sbjct: 349 PEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSY 389
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 122/221 (55%), Gaps = 13/221 (5%)
Query: 1 MSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI--------IGXXXX 49
MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 176 MSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSI 235
Query: 50 XXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109
QGFGNVG + + GAK + + + +I+NP+G + +L+ +
Sbjct: 236 LGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFK 295
Query: 110 TFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTT 169
+I F + + S + CDILIPAA E Q+T +NA V AKII EGANGPTT
Sbjct: 296 LQHGTILGFPKAKIYEGS--ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTT 353
Query: 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 210
EAD I ++ I++ PD+ NAGGV VSYFEW+ NL+++ +
Sbjct: 354 PEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSY 394
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 123/221 (55%), Gaps = 13/221 (5%)
Query: 1 MSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI--------IGXXXX 49
MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 176 MSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIENASYMSI 235
Query: 50 XXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109
QGFGNVG + + GAK VA+ + +I+NP+G + +L+ +
Sbjct: 236 LGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFK 295
Query: 110 TFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTT 169
+I F + + S + CDILIPAA E Q+T +NA V AKII EGANGPTT
Sbjct: 296 LQHGTILGFPKAKIYEGS--ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTT 353
Query: 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 210
+AD I ++ I++ PD+ NAGGV VSYF+ ++NL+++ +
Sbjct: 354 PQADKIFLERNIMVIPDLYLNAGGVTVSYFQILKNLNHVSY 394
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 129/262 (49%), Gaps = 5/262 (1%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+W+MDTYS T+PG+VTGKP ++GGS GR A G G ++
Sbjct: 161 MAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGALLVLEALAKRRGLDLRGAR 220
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
QG G VG+ A + G ++VA+ +Y P G ++ ++ T S+ +
Sbjct: 221 VVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL 280
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
+E + + ++L+ AA E + + A V A+ ++E AN EA+ L KG
Sbjct: 281 A-----PEEVFGLEAEVLVLAAREGALDGDRARQVQAQAVVEVANFGLNPEAEAYLLGKG 335
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
++ PD+++ GG++ SY EWVQ+L+ W+ +E+ R + DA+ A +
Sbjct: 336 ALVVPDLLSGGGGLLASYLEWVQDLNMFFWSPEEVRERFETRVARVVDAVCRRAERGGLD 395
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LR A + R+ +A + RG+
Sbjct: 396 LRMGALALALERLDEATRLRGV 417
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 125/266 (46%), Gaps = 28/266 (10%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
+ ++ Y KN + G++TGK I GGS R +ATG GV
Sbjct: 183 IGYLFGQYKKLKN-SFEGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKK 241
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP--------------KLQ 106
G GNV + GA ++ + D I PNGF +L+
Sbjct: 242 CLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLK 301
Query: 107 KYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNAN---NVTAKIILEG 163
+Y+ ++++ K F ++++ W+IPCDI P A +++I N+A+ K+I+EG
Sbjct: 302 EYLKYSKTAKYF-------ENQKPWNIPCDIAFPCATQNEINENDADLFIQNKCKMIVEG 354
Query: 164 ANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNII 223
AN PT +A L+ IIL P NAGGV VS E QN L WT QE +++L NI+
Sbjct: 355 ANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQWTHQETDMKLQNIM 414
Query: 224 CNAFDAIWELANTKKVSLRTAAFIIG 249
+ ++ + NT K+ L + + G
Sbjct: 415 KSIYE---QCHNTSKIYLNESDLVAG 437
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 19/260 (7%)
Query: 18 GIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLF 77
G++TGK S GGS R +ATG G+ G GNV A
Sbjct: 191 GVLTGKARSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKA 250
Query: 78 FKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF------- 130
+ GA+++ D T+ + +GF KL + + IK +G + +KEF
Sbjct: 251 MEFGARVITASDSSGTVVDESGFTKEKLARLI----EIKASRDGRVADYAKEFGLVYLEG 306
Query: 131 ---WSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEADDILRDKGIILA 184
WS+P DI +P A ++++ ++ A+ + A K + EGAN PTT EA ++ + G++ A
Sbjct: 307 QQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFA 366
Query: 185 PDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV--SLR 242
P NAGGV S E QN + L W ++++ RL++I+ + D A + +L
Sbjct: 367 PGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMTDIHDGSAAAAERYGLGYNLV 426
Query: 243 TAAFIIGCTRVLQAHKTRGL 262
A I+G ++ A +G+
Sbjct: 427 AGANIVGFQKIADAMMAQGI 446
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 122/258 (47%), Gaps = 18/258 (6%)
Query: 19 IVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFF 78
+ TGK +S GGS R +ATG G+ G GNV A
Sbjct: 196 VFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAM 255
Query: 79 KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF-------- 130
+ GA+++ D T+ + +GF KL + + IK +G + +KEF
Sbjct: 256 EFGARVITASDSSGTVVDESGFTKEKLARLI----EIKSSRDGRVADYAKEFGLVYLEGQ 311
Query: 131 --WSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEADDILRDKGIILAP 185
WS+P DI +P A ++++ ++ A+ + A K + EGAN PTT EA ++ + G++ AP
Sbjct: 312 QPWSVPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAP 371
Query: 186 DVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT-KKVSLRTA 244
NAGGV S E QN + L W ++++ RL++I+ + A E ++ +
Sbjct: 372 GKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQG 431
Query: 245 AFIIGCTRVLQAHKTRGL 262
A I G +V A +G+
Sbjct: 432 ANIAGFVKVADAMLAQGV 449
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 122/258 (47%), Gaps = 18/258 (6%)
Query: 19 IVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFF 78
+ TGK +S GGS R +ATG G+ G GNV A
Sbjct: 193 VFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAM 252
Query: 79 KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF-------- 130
+ GA+++ D T+ + +GF KL + + IK +G + +KEF
Sbjct: 253 EFGARVITASDSSGTVVDESGFTKEKLARLI----EIKASRDGRVADYAKEFGLVYLEGQ 308
Query: 131 --WSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEADDILRDKGIILAP 185
WS+P DI +P A ++++ ++ A+ + A K + EGAN PTT EA ++ + G++ AP
Sbjct: 309 QPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAP 368
Query: 186 DVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT-KKVSLRTA 244
NAGGV S E QN + L W ++++ RL++I+ + A E ++ +
Sbjct: 369 GKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQG 428
Query: 245 AFIIGCTRVLQAHKTRGL 262
A I G +V A +G+
Sbjct: 429 ANIAGFVKVADAMLAQGV 446
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 121/258 (46%), Gaps = 18/258 (6%)
Query: 19 IVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFF 78
+ TGK +S GGS R +ATG G+ G GNV A
Sbjct: 193 VFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAM 252
Query: 79 KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF-------- 130
+ GA+++ D + + +GF KL + + IK +G + +KEF
Sbjct: 253 EFGARVITASDSSGLVVDESGFTKEKLARLI----EIKASRDGRVADYAKEFGLVYLEGQ 308
Query: 131 --WSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEADDILRDKGIILAP 185
WS+P DI +P A ++++ ++ A+ + A K + EGAN PTT EA ++ + G++ AP
Sbjct: 309 QPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAP 368
Query: 186 DVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT-KKVSLRTA 244
NAGGV S E QN + L W ++++ RL++I+ + A E ++ +
Sbjct: 369 GKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQG 428
Query: 245 AFIIGCTRVLQAHKTRGL 262
A I G +V A +G+
Sbjct: 429 ANIAGFVKVADAMLAQGV 446
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 120/258 (46%), Gaps = 13/258 (5%)
Query: 18 GIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLF 77
G++TGK S GGS R +ATG G GFGNV AA
Sbjct: 190 GVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKL 249
Query: 78 FKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-----IKDFNE--GEKINDSKEF 130
+ GAK V + IY+P G + Y+ R+ ++D+ + G + ++
Sbjct: 250 AELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKP 309
Query: 131 WSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEA-DDILRDKGIILAPD 186
W DI++P A ++ + + A + A K +E AN PTT EA +++ +++AP
Sbjct: 310 WGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPS 369
Query: 187 VITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV--SLRTA 244
NAGGV+VS FE QN L WT +E++ +L+ ++ + D A + +L
Sbjct: 370 KAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAG 429
Query: 245 AFIIGCTRVLQAHKTRGL 262
A I+G ++ A +G+
Sbjct: 430 ANIVGFQKIADAMMAQGI 447
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 119/258 (46%), Gaps = 13/258 (5%)
Query: 18 GIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLF 77
G++TGK S GGS R +ATG G GFGNV AA
Sbjct: 190 GVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKL 249
Query: 78 FKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-----IKDFNE--GEKINDSKEF 130
+ GAK V + IY+P G + Y+ R+ ++D+ + G + ++
Sbjct: 250 AELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKP 309
Query: 131 WSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEADDIL-RDKGIILAPD 186
W DI++P A ++ + + A + A K +E AN PTT EA L + +++AP
Sbjct: 310 WGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPS 369
Query: 187 VITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV--SLRTA 244
NAGGV+VS FE QN L WT +E++ +L+ ++ + D A + +L
Sbjct: 370 KAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAG 429
Query: 245 AFIIGCTRVLQAHKTRGL 262
A I+G ++ A +G+
Sbjct: 430 ANIVGFQKIADAMMAQGI 447
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 119/258 (46%), Gaps = 13/258 (5%)
Query: 18 GIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLF 77
G++TGK S GGS R +ATG G GFGNV AA
Sbjct: 190 GVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKL 249
Query: 78 FKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-----IKDFNE--GEKINDSKEF 130
+ GAK V + IY+P G + Y+ R+ ++D+ + G + ++
Sbjct: 250 AELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKP 309
Query: 131 WSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEA-DDILRDKGIILAPD 186
W DI++P A ++ + + A + A K +E AN PTT EA +++ +++AP
Sbjct: 310 WGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPS 369
Query: 187 VITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV--SLRTA 244
NAGGV+V FE QN L WT +E++ +L+ ++ + D A + +L
Sbjct: 370 KAVNAGGVLVVGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAG 429
Query: 245 AFIIGCTRVLQAHKTRGL 262
A I+G ++ A +G+
Sbjct: 430 ANIVGFQKIADAMMAQGI 447
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 115/261 (44%), Gaps = 21/261 (8%)
Query: 18 GIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLF 77
G +TGK + GGS R +ATG G+ G GNV
Sbjct: 212 GTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKL 271
Query: 78 FKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG---EKINDS---KEF- 130
K++ + D +Y PNGF L+ F +K+ +G E +N S K F
Sbjct: 272 LHLNVKVLTLSDSNGYVYEPNGFTHENLE----FLIDLKEEKKGRIKEYLNHSSTAKYFP 327
Query: 131 ----WSIPCDILIPAAIEDQITINNANNVTAK---IILEGANGPTTTEADDILRDKGIIL 183
W +PC + P A ++ + ++ A + ++ EGAN P+T +A ++ + II
Sbjct: 328 NEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIY 387
Query: 184 APDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWE--LANTK-KVS 240
P NAGGV +S E QN WT + ++ +L I+ N F A E L TK K
Sbjct: 388 CPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYD 447
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
L+ A I G +V +++ +G
Sbjct: 448 LQAGANIAGFLKVAESYIEQG 468
>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 27/197 (13%)
Query: 64 QGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123
QG G VG A+L +AGA+++ D + + G
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHT 220
Query: 124 INDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGII 182
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+
Sbjct: 221 AVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 280
Query: 183 LAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLR 242
APD + NAGG I V L W+E ++ R I + + ++E+++ V+
Sbjct: 281 YAPDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPD 334
Query: 243 TAAFIIGCTRVLQAHKT 259
AA + R +A T
Sbjct: 335 EAARTLAGRRAREASTT 351
>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 27/197 (13%)
Query: 64 QGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123
QG G VG A+L +AGA+++ D + + G
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHT 220
Query: 124 INDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGII 182
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+
Sbjct: 221 AVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 280
Query: 183 LAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLR 242
APD + NAGG I V L W+E ++ R I + + ++E+++ V+
Sbjct: 281 YAPDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPD 334
Query: 243 TAAFIIGCTRVLQAHKT 259
AA + R +A T
Sbjct: 335 EAARTLAGRRAREASTT 351
>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 27/197 (13%)
Query: 64 QGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123
QG G VG A+L +AGA+++ D + + G
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHT 220
Query: 124 INDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGII 182
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+
Sbjct: 221 AVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 280
Query: 183 LAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLR 242
APD + NAGG I V L W+E ++ R I + + ++E+++ V+
Sbjct: 281 YAPDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPD 334
Query: 243 TAAFIIGCTRVLQAHKT 259
AA + R +A T
Sbjct: 335 EAARTLAGRRAREASTT 351
>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 27/197 (13%)
Query: 64 QGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123
QG G VG A+L +AGA+++ D + + G
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHT 221
Query: 124 INDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGII 182
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+
Sbjct: 222 AVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 281
Query: 183 LAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLR 242
APD + NAGG I V L W+E ++ R I + + ++E+++ V+
Sbjct: 282 YAPDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPD 335
Query: 243 TAAFIIGCTRVLQAHKT 259
AA + R +A T
Sbjct: 336 EAARTLAGRRAREASTT 352
>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 27/197 (13%)
Query: 64 QGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123
QG G VG A+L +AGA+++ D + + G
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHT 221
Query: 124 INDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGII 182
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+
Sbjct: 222 AVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 281
Query: 183 LAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLR 242
APD + NAGG I V L W+E ++ R I + + ++E+++ V+
Sbjct: 282 YAPDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPD 335
Query: 243 TAAFIIGCTRVLQAHKT 259
AA + R +A T
Sbjct: 336 EAARTLAGRRAREASTT 352
>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 27/197 (13%)
Query: 64 QGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123
QG G VG A+L +AGA+++ D + + G
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHT 221
Query: 124 INDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGII 182
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+
Sbjct: 222 AVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 281
Query: 183 LAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLR 242
APD + NAGG I V L W+E ++ R I + + ++E+++ V+
Sbjct: 282 YAPDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPD 335
Query: 243 TAAFIIGCTRVLQAHKT 259
AA + R +A T
Sbjct: 336 EAARTLAGRRAREASTT 352
>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 27/197 (13%)
Query: 64 QGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123
QG G VG A+L +AGA+++ D + + G
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHT 220
Query: 124 INDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGII 182
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+
Sbjct: 221 AVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 280
Query: 183 LAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLR 242
APD + NAGG I V L W+E ++ R I + + ++E+++ V+
Sbjct: 281 YAPDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPD 334
Query: 243 TAAFIIGCTRVLQAHKT 259
AA + R +A T
Sbjct: 335 EAARTLAGRRAREASTT 351
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 27/197 (13%)
Query: 64 QGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123
QG G VG A+L +AGA+++ D + + G
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHT 221
Query: 124 INDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGII 182
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+
Sbjct: 222 AVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 281
Query: 183 LAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLR 242
APD + NAGG I V L W+E ++ R I + + ++E+++ V+
Sbjct: 282 YAPDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPD 335
Query: 243 TAAFIIGCTRVLQAHKT 259
AA + R +A T
Sbjct: 336 EAARTLAGRRAREASTT 352
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 22/134 (16%)
Query: 64 QGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV-TFTRSIKDFNEGE 122
QG GNV + GAK++ I D N +Q+ V F + NE
Sbjct: 179 QGVGNVAYALCEYLHEEGAKLI-ITD----------INEEAVQRAVDAFGATAVGINE-- 225
Query: 123 KINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGP-TTTEADDILRDKGI 181
+S DI P A+ I + AK+I AN T D++ + GI
Sbjct: 226 -------IYSQEADIFAPCALGAIINDETIPQLKAKVIAGSANNQLKETRHGDLIHEMGI 278
Query: 182 ILAPDVITNAGGVI 195
+ APD + N+GGVI
Sbjct: 279 VYAPDYVINSGGVI 292
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 131 WSIPCDILIPAAIEDQITINNANNVTAKIILEGA-NGPTTTEADDILRDKGIILAPDVIT 189
+ + CDI P A+ + + AK+I A N L + GI+ APD +
Sbjct: 227 YGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVI 286
Query: 190 NAGGVIVSYFEWVQNLSNLLWTEQEIN-LRLNNIICNAFDAIWELANTKKVSLRTAAFII 248
NAGGVI N+++ L+ ++ + I ++ + I+ ++ V AA +
Sbjct: 287 NAGGVI--------NVADELYGYNRTRAMKRVDGIYDSIEKIFAISKRDGVPSYVAADRM 338
Query: 249 GCTRVLQAHKTR 260
R+ + K R
Sbjct: 339 AEERIAKVAKAR 350
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 65 GFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112
G G++GS A +F GAK++A YN P+ + ++T+T
Sbjct: 155 GVGHIGSAVAEIFSAMGAKVIAYD----VAYN------PEFEPFLTYT 192
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 65 GFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103
G G VG V+A F + GA + I D+ I N IP
Sbjct: 9 GIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIP 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,369,526
Number of Sequences: 62578
Number of extensions: 286431
Number of successful extensions: 760
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 57
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)