Query psy14499
Match_columns 262
No_of_seqs 177 out of 1432
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 21:20:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02477 glutamate dehydrogena 100.0 9.8E-76 2.1E-80 552.7 28.0 260 1-262 150-409 (410)
2 COG0334 GdhA Glutamate dehydro 100.0 1.8E-75 3.8E-80 543.1 24.8 261 1-262 150-410 (411)
3 PRK14030 glutamate dehydrogena 100.0 1.5E-74 3.2E-79 547.2 27.3 260 1-262 172-444 (445)
4 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 2.9E-72 6.4E-77 499.2 26.2 241 21-262 1-254 (254)
5 PRK09414 glutamate dehydrogena 100.0 2.5E-72 5.4E-77 533.4 26.1 260 1-262 176-444 (445)
6 PTZ00079 NADP-specific glutama 100.0 4E-71 8.7E-76 523.2 27.1 260 1-262 181-453 (454)
7 PRK14031 glutamate dehydrogena 100.0 9.5E-71 2.1E-75 521.6 25.8 260 1-262 172-443 (444)
8 PF00208 ELFV_dehydrog: Glutam 100.0 6.3E-66 1.4E-70 458.1 23.1 233 28-261 1-244 (244)
9 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 3.3E-63 7.2E-68 436.6 26.5 226 28-254 1-226 (227)
10 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 7.7E-61 1.7E-65 418.9 23.0 217 36-254 1-217 (217)
11 KOG2250|consensus 100.0 1.5E-59 3.3E-64 439.5 21.0 259 1-261 193-482 (514)
12 PTZ00324 glutamate dehydrogena 100.0 3.5E-51 7.5E-56 412.9 24.5 247 1-251 605-912 (1002)
13 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 2.1E-44 4.7E-49 311.6 22.4 195 34-254 2-199 (200)
14 smart00839 ELFV_dehydrog Gluta 100.0 9.2E-30 2E-34 197.9 9.0 100 135-237 3-102 (102)
15 COG2902 NAD-specific glutamate 99.7 4.7E-16 1E-20 160.4 11.8 187 15-202 913-1160(1592)
16 PF05088 Bac_GDH: Bacterial NA 99.6 3.3E-14 7.1E-19 151.3 14.3 193 7-201 841-1097(1528)
17 PRK06392 homoserine dehydrogen 99.5 5.9E-14 1.3E-18 129.9 10.0 173 59-239 1-199 (326)
18 PRK08374 homoserine dehydrogen 99.5 7.8E-14 1.7E-18 129.7 8.5 172 58-239 2-205 (336)
19 PRK06270 homoserine dehydrogen 99.4 1.1E-11 2.3E-16 115.6 13.5 179 58-239 2-209 (341)
20 PRK06813 homoserine dehydrogen 99.1 3.9E-10 8.5E-15 105.2 8.7 174 59-239 3-206 (346)
21 PLN02700 homoserine dehydrogen 98.9 5.8E-09 1.3E-13 98.2 8.5 178 56-239 1-223 (377)
22 cd05191 NAD_bind_amino_acid_DH 98.8 4.3E-08 9.3E-13 73.4 10.5 84 36-164 1-86 (86)
23 COG0460 ThrA Homoserine dehydr 98.8 2.4E-08 5.2E-13 92.3 10.1 169 57-239 2-197 (333)
24 PF00670 AdoHcyase_NAD: S-aden 98.8 4.1E-08 8.9E-13 82.2 10.5 102 39-161 3-106 (162)
25 PRK09436 thrA bifunctional asp 98.7 7.5E-08 1.6E-12 99.2 10.0 176 54-239 461-665 (819)
26 COG0281 SfcA Malic enzyme [Ene 98.7 2.6E-07 5.7E-12 87.3 12.5 126 31-167 172-303 (432)
27 cd00762 NAD_bind_malic_enz NAD 98.6 2.3E-07 5.1E-12 82.9 10.4 126 35-168 2-145 (254)
28 cd05312 NAD_bind_1_malic_enz N 98.6 5.3E-07 1.1E-11 81.7 11.9 126 35-168 2-144 (279)
29 PRK09466 metL bifunctional asp 98.6 3.4E-07 7.4E-12 94.1 10.5 174 55-239 455-659 (810)
30 PRK12861 malic enzyme; Reviewe 98.5 1.3E-06 2.9E-11 88.7 12.5 128 31-171 162-297 (764)
31 cd01065 NAD_bind_Shikimate_DH 98.5 6.4E-06 1.4E-10 67.3 14.2 130 43-186 4-138 (155)
32 PRK07232 bifunctional malic en 98.5 1.4E-06 3.1E-11 88.5 12.4 128 31-171 158-293 (752)
33 cd05311 NAD_bind_2_malic_enz N 98.5 2.9E-06 6.3E-11 74.9 12.9 138 35-182 2-145 (226)
34 PRK12862 malic enzyme; Reviewe 98.4 2.4E-06 5.1E-11 87.3 12.2 128 31-171 166-301 (763)
35 PF03949 Malic_M: Malic enzyme 98.4 1.2E-06 2.7E-11 78.4 8.7 127 35-167 2-144 (255)
36 TIGR02853 spore_dpaA dipicolin 98.4 3.9E-06 8.5E-11 76.6 12.2 127 33-184 129-259 (287)
37 PRK08306 dipicolinate synthase 98.4 5.9E-06 1.3E-10 75.7 12.5 128 33-184 130-260 (296)
38 PRK13529 malate dehydrogenase; 98.4 7.9E-06 1.7E-10 80.2 13.7 136 32-168 269-421 (563)
39 PLN03129 NADP-dependent malic 98.3 6.2E-06 1.3E-10 81.2 11.9 130 32-171 295-443 (581)
40 PRK05476 S-adenosyl-L-homocyst 98.2 5.6E-06 1.2E-10 79.4 9.2 109 32-164 189-299 (425)
41 PRK15438 erythronate-4-phospha 98.2 4.5E-05 9.8E-10 72.2 15.0 131 34-189 92-235 (378)
42 PRK09599 6-phosphogluconate de 98.2 7.5E-05 1.6E-09 68.3 16.1 116 59-195 1-125 (301)
43 PTZ00075 Adenosylhomocysteinas 98.2 8.9E-06 1.9E-10 78.8 10.2 108 38-166 233-343 (476)
44 cd00401 AdoHcyase S-adenosyl-L 98.2 2E-05 4.2E-10 75.5 11.5 101 32-156 179-280 (413)
45 PF03447 NAD_binding_3: Homose 98.1 1.3E-06 2.8E-11 68.8 2.5 90 65-195 1-95 (117)
46 PRK08410 2-hydroxyacid dehydro 98.1 0.0001 2.3E-09 68.0 15.1 110 54-188 141-258 (311)
47 PF02826 2-Hacid_dh_C: D-isome 98.1 1.6E-05 3.4E-10 67.4 8.6 109 53-182 31-147 (178)
48 TIGR00936 ahcY adenosylhomocys 98.1 2.6E-05 5.6E-10 74.5 10.7 120 35-178 175-299 (406)
49 PLN02928 oxidoreductase family 98.1 0.0001 2.2E-09 69.1 14.5 118 53-181 154-281 (347)
50 PF03446 NAD_binding_2: NAD bi 98.1 1.3E-05 2.9E-10 66.7 7.3 115 59-195 2-125 (163)
51 PLN02494 adenosylhomocysteinas 98.0 3.1E-05 6.7E-10 75.0 10.4 110 32-165 231-342 (477)
52 PRK07574 formate dehydrogenase 98.0 6.7E-05 1.5E-09 71.3 12.5 158 54-231 188-357 (385)
53 PTZ00317 NADP-dependent malic 98.0 4.9E-05 1.1E-09 74.7 11.8 131 32-167 271-419 (559)
54 PRK12549 shikimate 5-dehydroge 98.0 0.00029 6.4E-09 64.2 16.0 131 38-186 111-249 (284)
55 PRK00257 erythronate-4-phospha 98.0 0.00011 2.5E-09 69.6 13.2 121 36-181 94-226 (381)
56 PLN03139 formate dehydrogenase 98.0 0.0001 2.2E-09 70.1 12.1 109 54-182 195-311 (386)
57 PRK13243 glyoxylate reductase; 98.0 0.00013 2.9E-09 67.9 12.6 155 54-231 146-312 (333)
58 COG0111 SerA Phosphoglycerate 97.9 0.00014 3E-09 67.6 12.5 109 53-182 137-253 (324)
59 PRK00258 aroE shikimate 5-dehy 97.9 0.00085 1.8E-08 60.8 17.2 129 37-184 105-241 (278)
60 COG0373 HemA Glutamyl-tRNA red 97.9 0.00041 8.8E-09 66.3 15.4 112 39-168 159-278 (414)
61 PRK09310 aroDE bifunctional 3- 97.9 0.00043 9.3E-09 67.6 15.6 156 38-229 316-472 (477)
62 COG0499 SAM1 S-adenosylhomocys 97.9 5.8E-05 1.3E-09 70.4 8.7 108 31-162 185-293 (420)
63 TIGR00507 aroE shikimate 5-deh 97.9 0.0015 3.2E-08 58.9 17.6 130 37-185 100-235 (270)
64 PF01488 Shikimate_DH: Shikima 97.8 9.1E-05 2E-09 60.0 8.0 103 54-171 8-117 (135)
65 PRK06932 glycerate dehydrogena 97.8 0.00068 1.5E-08 62.7 14.4 102 55-182 144-253 (314)
66 PRK15409 bifunctional glyoxyla 97.8 0.00034 7.4E-09 64.9 12.3 108 53-182 140-256 (323)
67 PRK13302 putative L-aspartate 97.8 0.00013 2.8E-09 66.1 9.2 110 56-183 4-119 (271)
68 COG1052 LdhA Lactate dehydroge 97.8 0.00047 1E-08 64.1 12.9 108 53-182 141-256 (324)
69 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.0005 1.1E-08 58.7 11.8 124 36-172 6-138 (194)
70 TIGR00872 gnd_rel 6-phosphoglu 97.7 0.00019 4.1E-09 65.6 9.7 169 59-248 1-208 (298)
71 PRK06436 glycerate dehydrogena 97.7 0.00033 7.2E-09 64.5 11.2 103 54-181 118-228 (303)
72 TIGR01327 PGDH D-3-phosphoglyc 97.7 0.0006 1.3E-08 67.3 13.6 157 53-231 133-301 (525)
73 PF01113 DapB_N: Dihydrodipico 97.7 3.1E-05 6.7E-10 61.9 3.8 107 59-178 1-111 (124)
74 PRK06349 homoserine dehydrogen 97.7 0.0001 2.2E-09 70.8 7.9 162 57-239 2-188 (426)
75 PRK13304 L-aspartate dehydroge 97.7 0.00013 2.9E-09 65.7 8.0 107 59-184 2-117 (265)
76 PRK12480 D-lactate dehydrogena 97.7 0.0011 2.3E-08 61.8 14.1 105 54-182 142-254 (330)
77 PRK06487 glycerate dehydrogena 97.6 0.00051 1.1E-08 63.6 10.9 101 55-182 145-253 (317)
78 PRK00048 dihydrodipicolinate r 97.6 0.00018 3.9E-09 64.5 7.7 111 59-191 2-121 (257)
79 PRK00045 hemA glutamyl-tRNA re 97.6 0.0047 1E-07 59.3 17.8 101 55-171 179-288 (423)
80 PLN02520 bifunctional 3-dehydr 97.6 0.0028 6.1E-08 62.7 16.5 133 37-185 352-496 (529)
81 TIGR01035 hemA glutamyl-tRNA r 97.6 0.0045 9.7E-08 59.4 17.5 110 46-172 169-286 (417)
82 TIGR01505 tartro_sem_red 2-hyd 97.6 0.0029 6.3E-08 57.3 15.4 170 60-249 1-205 (291)
83 cd01080 NAD_bind_m-THF_DH_Cycl 97.6 0.00086 1.9E-08 56.6 10.8 96 32-167 22-119 (168)
84 PRK11790 D-3-phosphoglycerate 97.6 0.0016 3.5E-08 62.4 13.7 106 53-182 146-259 (409)
85 PRK12490 6-phosphogluconate de 97.5 0.00052 1.1E-08 62.7 9.7 170 60-249 2-210 (299)
86 PRK14175 bifunctional 5,10-met 97.5 0.0009 2E-08 61.1 10.5 95 33-167 137-233 (286)
87 PRK13581 D-3-phosphoglycerate 97.5 0.0018 4E-08 63.9 13.3 108 53-182 135-250 (526)
88 COG1023 Gnd Predicted 6-phosph 97.5 0.00063 1.4E-08 60.5 8.9 169 59-248 1-209 (300)
89 COG0057 GapA Glyceraldehyde-3- 97.5 0.00077 1.7E-08 62.4 9.8 96 59-164 2-122 (335)
90 PTZ00142 6-phosphogluconate de 97.5 0.00055 1.2E-08 66.7 9.1 176 59-248 2-218 (470)
91 cd05213 NAD_bind_Glutamyl_tRNA 97.4 0.001 2.2E-08 61.4 10.1 110 44-171 165-281 (311)
92 PF03807 F420_oxidored: NADP o 97.4 0.00042 9.1E-09 52.1 6.3 88 60-166 1-96 (96)
93 PLN00203 glutamyl-tRNA reducta 97.4 0.013 2.8E-07 57.9 18.3 112 43-167 250-372 (519)
94 PRK15461 NADH-dependent gamma- 97.4 0.00089 1.9E-08 61.2 9.2 105 60-184 3-117 (296)
95 TIGR01809 Shik-DH-AROM shikima 97.4 0.0038 8.3E-08 56.8 13.0 129 38-184 107-251 (282)
96 PLN02306 hydroxypyruvate reduc 97.3 0.0045 9.9E-08 58.9 13.5 119 53-182 160-292 (386)
97 PRK15469 ghrA bifunctional gly 97.3 0.001 2.2E-08 61.5 8.7 107 54-182 132-246 (312)
98 COG0169 AroE Shikimate 5-dehyd 97.3 0.032 6.9E-07 51.0 18.2 129 38-184 108-246 (283)
99 TIGR01692 HIBADH 3-hydroxyisob 97.3 0.0097 2.1E-07 54.0 14.9 167 63-249 1-202 (288)
100 TIGR00465 ilvC ketol-acid redu 97.3 0.026 5.5E-07 52.3 17.4 30 56-85 1-30 (314)
101 PRK11559 garR tartronate semia 97.3 0.0016 3.4E-08 59.1 9.3 109 59-187 3-121 (296)
102 PRK13301 putative L-aspartate 97.3 0.001 2.2E-08 60.1 7.8 100 58-176 2-106 (267)
103 PRK12548 shikimate 5-dehydroge 97.3 0.019 4.2E-07 52.3 16.4 134 38-184 110-256 (289)
104 PRK13940 glutamyl-tRNA reducta 97.2 0.031 6.8E-07 53.7 18.1 104 48-167 171-276 (414)
105 PF10727 Rossmann-like: Rossma 97.2 0.00045 9.8E-09 55.8 4.6 107 57-183 9-122 (127)
106 PRK12749 quinate/shikimate deh 97.2 0.033 7.1E-07 51.0 17.3 135 38-186 108-255 (288)
107 PRK14027 quinate/shikimate deh 97.2 0.027 5.8E-07 51.4 16.5 130 38-184 111-249 (283)
108 TIGR00518 alaDH alanine dehydr 97.2 0.0035 7.5E-08 59.3 10.9 92 56-162 165-265 (370)
109 TIGR00873 gnd 6-phosphoglucona 97.2 0.0013 2.9E-08 64.0 8.3 119 60-194 1-128 (467)
110 PF01408 GFO_IDH_MocA: Oxidore 97.2 0.0036 7.9E-08 48.6 9.2 108 59-184 1-117 (120)
111 PRK09424 pntA NAD(P) transhydr 97.1 0.0022 4.7E-08 63.1 8.9 131 42-184 139-310 (509)
112 PLN02350 phosphogluconate dehy 97.1 0.002 4.4E-08 63.1 8.4 173 59-247 7-223 (493)
113 COG5322 Predicted dehydrogenas 97.1 0.01 2.2E-07 53.8 12.0 52 36-87 145-197 (351)
114 PRK08605 D-lactate dehydrogena 97.1 0.0026 5.6E-08 59.3 8.6 106 53-181 141-255 (332)
115 smart00846 Gp_dh_N Glyceraldeh 97.1 0.0068 1.5E-07 50.2 10.1 31 59-89 1-32 (149)
116 PRK12550 shikimate 5-dehydroge 97.0 0.079 1.7E-06 48.1 17.8 122 38-184 107-236 (272)
117 KOG1370|consensus 97.0 0.0017 3.6E-08 59.7 6.5 85 56-161 212-298 (434)
118 KOG0068|consensus 97.0 0.0017 3.8E-08 60.3 6.6 104 52-177 140-251 (406)
119 TIGR00036 dapB dihydrodipicoli 97.0 0.0031 6.6E-08 57.0 8.0 113 59-184 2-122 (266)
120 PRK14191 bifunctional 5,10-met 97.0 0.0065 1.4E-07 55.5 10.1 92 33-164 136-229 (285)
121 PRK06476 pyrroline-5-carboxyla 97.0 0.0084 1.8E-07 53.4 10.6 170 59-248 1-193 (258)
122 PRK03659 glutathione-regulated 97.0 0.011 2.4E-07 59.3 12.5 140 58-223 400-549 (601)
123 PRK04207 glyceraldehyde-3-phos 96.9 0.0047 1E-07 57.8 9.2 94 59-165 2-111 (341)
124 TIGR01546 GAPDH-II_archae glyc 96.9 0.0025 5.4E-08 59.5 7.2 91 61-163 1-106 (333)
125 COG2084 MmsB 3-hydroxyisobutyr 96.9 0.005 1.1E-07 56.3 8.9 115 59-194 1-125 (286)
126 PRK12491 pyrroline-5-carboxyla 96.9 0.013 2.9E-07 53.0 11.4 113 58-189 2-124 (272)
127 PF01262 AlaDh_PNT_C: Alanine 96.9 0.0016 3.4E-08 54.6 5.0 33 56-89 18-50 (168)
128 PRK14178 bifunctional 5,10-met 96.9 0.014 3E-07 53.3 11.1 92 33-164 131-224 (279)
129 TIGR00561 pntA NAD(P) transhyd 96.8 0.0088 1.9E-07 58.9 10.5 96 56-163 162-283 (511)
130 TIGR01532 E4PD_g-proteo D-eryt 96.8 0.013 2.8E-07 54.6 11.1 93 60-163 1-120 (325)
131 PRK13303 L-aspartate dehydroge 96.8 0.0046 1E-07 55.7 8.0 107 59-184 2-117 (265)
132 PRK15059 tartronate semialdehy 96.8 0.0069 1.5E-07 55.3 9.2 108 60-188 2-119 (292)
133 PRK07417 arogenate dehydrogena 96.8 0.02 4.3E-07 51.8 11.9 121 59-200 1-128 (279)
134 PRK06141 ornithine cyclodeamin 96.8 0.015 3.3E-07 53.6 11.3 122 48-184 116-240 (314)
135 PRK14618 NAD(P)H-dependent gly 96.8 0.0097 2.1E-07 54.9 10.0 113 58-183 4-131 (328)
136 PRK13403 ketol-acid reductoiso 96.7 0.0067 1.5E-07 56.4 8.3 34 55-89 13-46 (335)
137 PRK07680 late competence prote 96.7 0.0048 1E-07 55.5 7.2 111 59-186 1-118 (273)
138 PRK14982 acyl-ACP reductase; P 96.7 0.015 3.2E-07 54.5 10.7 116 36-172 133-255 (340)
139 COG1712 Predicted dinucleotide 96.7 0.0078 1.7E-07 53.2 7.9 100 59-176 1-104 (255)
140 PRK03562 glutathione-regulated 96.7 0.018 3.8E-07 58.1 11.5 111 58-188 400-520 (621)
141 PRK07340 ornithine cyclodeamin 96.7 0.032 7E-07 51.3 12.3 138 32-187 100-240 (304)
142 PRK14192 bifunctional 5,10-met 96.6 0.0063 1.4E-07 55.6 7.2 52 34-90 139-191 (283)
143 PRK07679 pyrroline-5-carboxyla 96.6 0.096 2.1E-06 47.3 14.6 100 57-175 2-110 (279)
144 TIGR02356 adenyl_thiF thiazole 96.6 0.0061 1.3E-07 52.7 6.3 37 55-91 18-54 (202)
145 PRK00676 hemA glutamyl-tRNA re 96.5 0.013 2.9E-07 54.7 8.9 102 41-167 158-264 (338)
146 PRK08328 hypothetical protein; 96.5 0.0029 6.3E-08 55.9 4.2 35 55-89 24-58 (231)
147 COG2085 Predicted dinucleotide 96.5 0.011 2.3E-07 51.7 7.5 91 59-166 2-95 (211)
148 PRK11579 putative oxidoreducta 96.5 0.037 8E-07 51.4 11.6 109 59-187 5-122 (346)
149 PRK07634 pyrroline-5-carboxyla 96.5 0.055 1.2E-06 47.4 12.1 101 57-176 3-111 (245)
150 KOG0069|consensus 96.5 0.017 3.7E-07 53.9 9.1 104 54-178 158-269 (336)
151 PF00044 Gp_dh_N: Glyceraldehy 96.5 0.017 3.7E-07 48.0 8.2 44 59-110 1-45 (151)
152 PF02737 3HCDH_N: 3-hydroxyacy 96.4 0.0053 1.1E-07 52.2 5.2 76 60-148 1-92 (180)
153 PRK14194 bifunctional 5,10-met 96.4 0.0085 1.8E-07 55.2 6.9 53 33-90 138-191 (301)
154 PRK14189 bifunctional 5,10-met 96.4 0.01 2.2E-07 54.2 7.3 53 33-90 137-190 (285)
155 PRK10792 bifunctional 5,10-met 96.4 0.011 2.3E-07 54.1 7.4 92 33-164 138-231 (285)
156 PRK14176 bifunctional 5,10-met 96.4 0.011 2.5E-07 54.0 7.5 53 33-90 143-196 (287)
157 PRK06046 alanine dehydrogenase 96.4 0.055 1.2E-06 50.2 12.0 141 32-188 104-247 (326)
158 PLN02819 lysine-ketoglutarate 96.4 0.013 2.7E-07 62.2 8.4 131 57-202 568-718 (1042)
159 PRK08300 acetaldehyde dehydrog 96.4 0.015 3.3E-07 53.5 8.0 95 57-168 3-108 (302)
160 PRK08223 hypothetical protein; 96.4 0.004 8.6E-08 57.0 4.1 36 55-90 24-59 (287)
161 PRK11064 wecC UDP-N-acetyl-D-m 96.3 0.17 3.6E-06 48.6 15.5 31 58-89 3-33 (415)
162 cd00755 YgdL_like Family of ac 96.3 0.0041 8.9E-08 55.2 4.0 35 56-90 9-43 (231)
163 PF02882 THF_DHG_CYH_C: Tetrah 96.3 0.014 3E-07 49.0 6.9 54 32-90 14-68 (160)
164 PRK15057 UDP-glucose 6-dehydro 96.3 0.02 4.3E-07 54.5 8.6 118 59-190 1-145 (388)
165 PLN02858 fructose-bisphosphate 96.3 0.14 3E-06 56.3 16.0 171 57-249 3-213 (1378)
166 TIGR01470 cysG_Nterm siroheme 96.3 0.089 1.9E-06 45.7 12.0 35 54-89 5-39 (205)
167 PF02254 TrkA_N: TrkA-N domain 96.2 0.022 4.8E-07 44.0 7.3 103 61-183 1-112 (116)
168 PRK06718 precorrin-2 dehydroge 96.2 0.012 2.7E-07 50.9 6.4 84 54-153 6-89 (202)
169 KOG1257|consensus 96.2 0.024 5.3E-07 55.4 8.8 126 32-168 284-428 (582)
170 PRK07531 bifunctional 3-hydrox 96.2 0.066 1.4E-06 52.5 12.0 76 59-146 5-92 (495)
171 PLN02688 pyrroline-5-carboxyla 96.2 0.024 5.2E-07 50.5 8.3 92 59-172 1-102 (266)
172 PRK13535 erythrose 4-phosphate 96.2 0.09 2E-06 49.2 12.3 96 59-164 2-124 (336)
173 PRK05479 ketol-acid reductoiso 96.2 0.012 2.7E-07 54.8 6.5 34 55-89 14-47 (330)
174 PLN02858 fructose-bisphosphate 96.2 0.2 4.4E-06 55.0 16.5 169 58-248 324-532 (1378)
175 PRK09496 trkA potassium transp 96.1 0.037 7.9E-07 53.0 9.8 121 45-183 217-346 (453)
176 TIGR02355 moeB molybdopterin s 96.1 0.022 4.8E-07 50.7 7.7 36 55-90 21-56 (240)
177 PRK12475 thiamine/molybdopteri 96.1 0.019 4.1E-07 53.7 7.5 37 55-91 21-57 (338)
178 COG0673 MviM Predicted dehydro 96.1 0.051 1.1E-06 49.7 10.3 113 57-186 2-124 (342)
179 PRK14179 bifunctional 5,10-met 96.1 0.019 4.1E-07 52.5 7.3 52 33-89 137-189 (284)
180 PRK08618 ornithine cyclodeamin 96.1 0.084 1.8E-06 48.9 11.7 139 34-188 104-246 (325)
181 PRK09260 3-hydroxybutyryl-CoA 96.1 0.022 4.8E-07 51.6 7.7 30 59-89 2-31 (288)
182 PRK05690 molybdopterin biosynt 96.1 0.0096 2.1E-07 53.1 5.2 37 55-91 29-65 (245)
183 PRK14188 bifunctional 5,10-met 96.1 0.025 5.4E-07 52.0 7.9 52 33-89 137-189 (296)
184 COG1748 LYS9 Saccharopine dehy 96.0 0.018 3.9E-07 54.8 7.0 129 59-201 2-136 (389)
185 PF07991 IlvN: Acetohydroxy ac 96.0 0.016 3.4E-07 48.7 5.8 36 56-92 2-37 (165)
186 TIGR02371 ala_DH_arch alanine 96.0 0.097 2.1E-06 48.6 11.7 142 32-189 103-247 (325)
187 cd00757 ThiF_MoeB_HesA_family 96.0 0.017 3.7E-07 50.8 6.3 36 55-90 18-53 (228)
188 PRK15425 gapA glyceraldehyde-3 96.0 0.13 2.8E-06 48.0 12.3 96 59-164 3-122 (331)
189 PRK10669 putative cation:proto 96.0 0.024 5.1E-07 56.3 8.0 106 59-184 418-532 (558)
190 TIGR01534 GAPDH-I glyceraldehy 96.0 0.11 2.4E-06 48.5 11.8 95 60-164 1-123 (327)
191 PF01210 NAD_Gly3P_dh_N: NAD-d 96.0 0.029 6.4E-07 46.3 7.3 95 60-167 1-106 (157)
192 TIGR03026 NDP-sugDHase nucleot 96.0 0.18 3.8E-06 48.2 13.5 30 59-89 1-30 (411)
193 PLN02272 glyceraldehyde-3-phos 95.9 0.14 3E-06 49.3 12.6 97 59-164 86-207 (421)
194 PRK05600 thiamine biosynthesis 95.9 0.013 2.7E-07 55.6 5.4 88 55-143 38-140 (370)
195 PLN02712 arogenate dehydrogena 95.9 0.023 5.1E-07 57.7 7.5 113 51-184 362-481 (667)
196 TIGR01921 DAP-DH diaminopimela 95.9 0.051 1.1E-06 50.6 9.1 34 57-90 2-36 (324)
197 PRK01438 murD UDP-N-acetylmura 95.9 0.11 2.3E-06 50.4 11.8 40 50-90 8-47 (480)
198 PRK08644 thiamine biosynthesis 95.9 0.021 4.4E-07 49.9 6.1 37 55-91 25-61 (212)
199 COG0569 TrkA K+ transport syst 95.9 0.012 2.7E-07 51.8 4.7 112 59-189 1-124 (225)
200 PRK15116 sulfur acceptor prote 95.8 0.018 4E-07 52.2 5.9 37 55-91 27-63 (268)
201 PRK07688 thiamine/molybdopteri 95.8 0.026 5.7E-07 52.8 7.1 37 55-91 21-57 (339)
202 PRK14184 bifunctional 5,10-met 95.8 0.089 1.9E-06 48.2 10.0 53 33-90 136-193 (286)
203 PRK06153 hypothetical protein; 95.8 0.004 8.7E-08 59.1 1.3 36 55-90 173-208 (393)
204 cd05212 NAD_bind_m-THF_DH_Cycl 95.8 0.048 1E-06 44.7 7.5 51 35-90 9-60 (140)
205 TIGR01915 npdG NADPH-dependent 95.7 0.032 6.8E-07 48.6 6.8 97 59-168 1-105 (219)
206 cd01483 E1_enzyme_family Super 95.7 0.017 3.7E-07 46.7 4.8 31 60-90 1-31 (143)
207 COG1064 AdhP Zn-dependent alco 95.7 0.099 2.2E-06 48.9 10.3 41 48-89 158-198 (339)
208 KOG0409|consensus 95.7 0.024 5.2E-07 52.1 5.9 67 55-141 32-98 (327)
209 PRK04148 hypothetical protein; 95.7 0.078 1.7E-06 43.2 8.3 43 57-111 16-58 (134)
210 PRK08293 3-hydroxybutyryl-CoA 95.7 0.044 9.6E-07 49.6 7.7 30 59-89 4-33 (287)
211 PLN03096 glyceraldehyde-3-phos 95.6 0.16 3.5E-06 48.5 11.6 98 57-164 59-183 (395)
212 COG0345 ProC Pyrroline-5-carbo 95.6 0.24 5.2E-06 44.9 12.1 176 59-255 2-207 (266)
213 cd01079 NAD_bind_m-THF_DH NAD 95.6 0.042 9E-07 47.6 6.8 141 33-199 32-184 (197)
214 PRK07530 3-hydroxybutyryl-CoA 95.6 0.059 1.3E-06 48.8 8.3 30 59-89 5-34 (292)
215 TIGR02354 thiF_fam2 thiamine b 95.6 0.03 6.6E-07 48.4 6.1 37 55-91 18-54 (200)
216 PRK07403 glyceraldehyde-3-phos 95.6 0.17 3.7E-06 47.3 11.4 96 59-164 2-122 (337)
217 PRK14851 hypothetical protein; 95.6 0.016 3.4E-07 59.1 4.8 120 55-184 40-164 (679)
218 PRK06130 3-hydroxybutyryl-CoA 95.6 0.049 1.1E-06 49.8 7.6 106 59-176 5-127 (311)
219 PRK14174 bifunctional 5,10-met 95.5 0.11 2.3E-06 47.9 9.7 53 33-90 138-195 (295)
220 PRK07729 glyceraldehyde-3-phos 95.5 0.24 5.3E-06 46.4 12.1 96 59-164 3-121 (343)
221 PLN02358 glyceraldehyde-3-phos 95.5 0.17 3.8E-06 47.4 11.0 98 58-164 5-127 (338)
222 PRK07502 cyclohexadienyl dehyd 95.5 0.082 1.8E-06 48.3 8.8 72 57-146 5-78 (307)
223 PRK14183 bifunctional 5,10-met 95.5 0.055 1.2E-06 49.4 7.5 53 33-90 136-189 (281)
224 PRK14169 bifunctional 5,10-met 95.5 0.058 1.3E-06 49.2 7.6 53 33-90 135-188 (282)
225 PRK07819 3-hydroxybutyryl-CoA 95.4 0.051 1.1E-06 49.5 7.2 30 59-89 6-35 (286)
226 PRK11880 pyrroline-5-carboxyla 95.4 0.088 1.9E-06 46.9 8.6 89 59-167 3-97 (267)
227 PRK08762 molybdopterin biosynt 95.4 0.032 6.9E-07 52.8 6.1 37 55-91 132-168 (376)
228 PRK02472 murD UDP-N-acetylmura 95.4 0.095 2.1E-06 50.2 9.4 35 55-90 2-36 (447)
229 COG1648 CysG Siroheme synthase 95.4 0.4 8.6E-06 42.0 12.4 81 54-150 8-88 (210)
230 COG1063 Tdh Threonine dehydrog 95.4 0.068 1.5E-06 50.0 8.1 113 60-184 171-291 (350)
231 PLN02256 arogenate dehydrogena 95.4 0.048 1E-06 50.2 7.0 33 55-87 33-65 (304)
232 PRK14106 murD UDP-N-acetylmura 95.4 0.15 3.3E-06 48.8 10.7 35 55-90 2-36 (450)
233 PRK07066 3-hydroxybutyryl-CoA 95.3 0.06 1.3E-06 50.1 7.5 30 59-89 8-37 (321)
234 PRK05808 3-hydroxybutyryl-CoA 95.3 0.049 1.1E-06 49.1 6.8 30 59-89 4-33 (282)
235 PRK14177 bifunctional 5,10-met 95.3 0.064 1.4E-06 49.0 7.5 84 33-154 138-223 (284)
236 PRK08291 ectoine utilization p 95.3 0.29 6.3E-06 45.4 12.1 121 56-189 130-253 (330)
237 PRK05597 molybdopterin biosynt 95.3 0.027 5.9E-07 52.9 5.2 110 55-167 25-154 (355)
238 KOG2380|consensus 95.3 0.04 8.6E-07 51.6 6.0 33 57-90 51-83 (480)
239 TIGR01202 bchC 2-desacetyl-2-h 95.3 0.1 2.3E-06 47.4 8.9 34 56-89 143-176 (308)
240 PF02423 OCD_Mu_crystall: Orni 95.3 0.12 2.5E-06 47.8 9.2 126 48-189 119-249 (313)
241 PRK08268 3-hydroxy-acyl-CoA de 95.3 0.067 1.5E-06 52.7 8.0 77 59-148 8-100 (507)
242 PRK06129 3-hydroxyacyl-CoA deh 95.3 0.11 2.3E-06 47.7 8.9 30 59-89 3-32 (308)
243 KOG0455|consensus 95.2 0.12 2.6E-06 46.5 8.6 174 57-239 2-209 (364)
244 cd01492 Aos1_SUMO Ubiquitin ac 95.2 0.039 8.4E-07 47.6 5.5 37 55-91 18-54 (197)
245 PRK06719 precorrin-2 dehydroge 95.2 0.039 8.5E-07 45.9 5.3 80 54-152 9-88 (157)
246 PTZ00023 glyceraldehyde-3-phos 95.2 0.19 4.2E-06 47.0 10.4 97 59-164 3-122 (337)
247 PF13241 NAD_binding_7: Putati 95.2 0.028 6E-07 43.3 4.1 36 54-89 3-38 (103)
248 PRK07411 hypothetical protein; 95.2 0.037 8.1E-07 52.7 5.8 36 55-90 35-70 (390)
249 PRK09496 trkA potassium transp 95.2 0.061 1.3E-06 51.4 7.2 91 59-164 1-100 (453)
250 PRK06928 pyrroline-5-carboxyla 95.2 0.071 1.5E-06 48.2 7.3 113 59-189 2-124 (277)
251 PRK14852 hypothetical protein; 95.2 0.087 1.9E-06 55.5 8.7 119 55-184 329-453 (989)
252 PF03435 Saccharop_dh: Sacchar 95.2 0.028 6E-07 52.9 4.8 117 61-194 1-129 (386)
253 PRK06823 ornithine cyclodeamin 95.1 0.18 3.8E-06 46.8 10.0 118 57-188 127-247 (315)
254 PRK08655 prephenate dehydrogen 95.1 0.072 1.6E-06 51.5 7.6 87 59-165 1-93 (437)
255 PRK07877 hypothetical protein; 95.1 0.014 3E-07 59.8 2.8 34 55-90 104-139 (722)
256 PRK14172 bifunctional 5,10-met 95.1 0.085 1.8E-06 48.1 7.6 91 33-163 137-229 (278)
257 PLN02545 3-hydroxybutyryl-CoA 95.1 0.093 2E-06 47.6 7.8 30 59-89 5-34 (295)
258 COG2344 AT-rich DNA-binding pr 95.1 0.057 1.2E-06 46.5 5.9 52 37-89 64-117 (211)
259 COG0362 Gnd 6-phosphogluconate 95.1 0.14 3E-06 48.9 9.0 116 58-184 3-124 (473)
260 COG0190 FolD 5,10-methylene-te 95.1 0.059 1.3E-06 49.1 6.3 53 33-90 135-188 (283)
261 PRK07878 molybdopterin biosynt 95.0 0.052 1.1E-06 51.7 6.3 36 55-90 39-74 (392)
262 PRK03369 murD UDP-N-acetylmura 95.0 0.22 4.9E-06 48.6 10.9 33 56-89 10-42 (488)
263 COG1179 Dinucleotide-utilizing 95.0 0.025 5.3E-07 50.5 3.7 35 56-90 28-62 (263)
264 TIGR02279 PaaC-3OHAcCoADH 3-hy 95.0 0.076 1.7E-06 52.3 7.6 31 58-89 5-35 (503)
265 PRK14173 bifunctional 5,10-met 95.0 0.091 2E-06 48.1 7.5 53 33-90 134-187 (287)
266 PRK14170 bifunctional 5,10-met 95.0 0.074 1.6E-06 48.6 6.9 84 33-154 136-221 (284)
267 PRK00094 gpsA NAD(P)H-dependen 95.0 0.091 2E-06 47.9 7.6 96 59-167 2-108 (325)
268 PRK08289 glyceraldehyde-3-phos 95.0 0.14 3.1E-06 49.7 9.0 38 55-92 124-166 (477)
269 cd01487 E1_ThiF_like E1_ThiF_l 94.9 0.046 9.9E-07 46.2 5.0 32 60-91 1-32 (174)
270 PLN02237 glyceraldehyde-3-phos 94.8 0.36 7.8E-06 46.7 11.3 98 57-164 74-197 (442)
271 PRK06545 prephenate dehydrogen 94.8 0.23 4.9E-06 46.7 9.9 128 59-204 1-139 (359)
272 PF00070 Pyr_redox: Pyridine n 94.8 0.13 2.9E-06 37.2 6.6 42 60-104 1-42 (80)
273 TIGR03215 ac_ald_DH_ac acetald 94.8 0.086 1.9E-06 48.2 6.7 87 59-162 2-94 (285)
274 TIGR02992 ectoine_eutC ectoine 94.8 0.57 1.2E-05 43.4 12.3 119 57-188 128-249 (326)
275 PLN02516 methylenetetrahydrofo 94.7 0.099 2.1E-06 48.2 7.0 53 33-90 146-199 (299)
276 PRK14171 bifunctional 5,10-met 94.7 0.097 2.1E-06 48.0 6.9 53 33-90 138-191 (288)
277 PRK14187 bifunctional 5,10-met 94.7 0.1 2.2E-06 48.0 7.0 83 34-154 140-224 (294)
278 PRK14190 bifunctional 5,10-met 94.7 0.096 2.1E-06 47.9 6.8 53 33-90 137-190 (284)
279 PRK14186 bifunctional 5,10-met 94.6 0.11 2.5E-06 47.7 7.0 52 34-90 138-190 (297)
280 PLN02712 arogenate dehydrogena 94.6 0.11 2.5E-06 52.8 7.7 87 57-164 51-143 (667)
281 COG0686 Ald Alanine dehydrogen 94.6 0.08 1.7E-06 49.0 5.9 145 33-195 133-305 (371)
282 PRK14166 bifunctional 5,10-met 94.6 0.11 2.5E-06 47.4 6.9 91 34-164 137-229 (282)
283 PRK07589 ornithine cyclodeamin 94.6 0.64 1.4E-05 43.7 12.1 141 32-188 104-249 (346)
284 PRK14180 bifunctional 5,10-met 94.6 0.11 2.5E-06 47.4 6.9 84 33-154 137-222 (282)
285 cd08239 THR_DH_like L-threonin 94.6 0.76 1.6E-05 41.9 12.5 39 49-89 156-195 (339)
286 cd08230 glucose_DH Glucose deh 94.5 0.47 1E-05 43.8 11.2 33 56-88 171-203 (355)
287 COG2423 Predicted ornithine cy 94.5 0.68 1.5E-05 43.3 12.1 143 32-189 105-251 (330)
288 PRK06522 2-dehydropantoate 2-r 94.5 0.25 5.4E-06 44.5 9.1 99 59-171 1-107 (304)
289 PRK14182 bifunctional 5,10-met 94.5 0.12 2.7E-06 47.1 7.0 52 34-90 137-189 (282)
290 PTZ00353 glycosomal glyceralde 94.5 0.48 1.1E-05 44.5 11.0 31 59-89 3-34 (342)
291 PRK06407 ornithine cyclodeamin 94.4 0.58 1.3E-05 43.0 11.3 118 57-187 116-236 (301)
292 PRK14806 bifunctional cyclohex 94.4 0.12 2.6E-06 52.9 7.4 111 58-187 3-122 (735)
293 PLN02897 tetrahydrofolate dehy 94.4 0.15 3.2E-06 47.9 7.3 53 33-90 193-246 (345)
294 PRK10206 putative oxidoreducta 94.4 0.31 6.7E-06 45.5 9.5 111 59-187 2-122 (344)
295 TIGR02130 dapB_plant dihydrodi 94.3 0.27 5.9E-06 44.7 8.7 119 59-189 1-127 (275)
296 PRK08507 prephenate dehydrogen 94.3 0.13 2.8E-06 46.2 6.7 70 59-148 1-72 (275)
297 KOG2741|consensus 94.3 0.3 6.5E-06 45.7 9.0 114 57-185 5-128 (351)
298 PLN02616 tetrahydrofolate dehy 94.2 0.17 3.7E-06 47.7 7.4 53 33-90 210-263 (364)
299 PRK14620 NAD(P)H-dependent gly 94.2 0.14 2.9E-06 47.2 6.8 78 59-147 1-84 (326)
300 PF00899 ThiF: ThiF family; I 94.1 0.054 1.2E-06 43.4 3.5 34 57-90 1-34 (135)
301 PRK05472 redox-sensing transcr 94.1 0.11 2.5E-06 45.1 5.8 52 37-89 64-117 (213)
302 PRK14193 bifunctional 5,10-met 94.1 0.2 4.3E-06 45.9 7.4 53 33-90 137-192 (284)
303 PRK14167 bifunctional 5,10-met 94.1 0.19 4.2E-06 46.2 7.4 92 33-164 136-233 (297)
304 cd01485 E1-1_like Ubiquitin ac 94.1 0.14 3.1E-06 44.1 6.2 35 56-90 17-51 (198)
305 PF01118 Semialdhyde_dh: Semia 94.0 0.084 1.8E-06 41.6 4.4 75 60-145 1-77 (121)
306 PRK15182 Vi polysaccharide bio 94.0 1.6 3.4E-05 42.2 13.8 40 58-109 6-45 (425)
307 KOG2018|consensus 94.0 0.21 4.5E-06 46.4 7.3 35 55-89 71-105 (430)
308 PF13380 CoA_binding_2: CoA bi 93.9 0.38 8.3E-06 37.9 7.9 99 59-184 1-106 (116)
309 PRK14185 bifunctional 5,10-met 93.9 0.22 4.8E-06 45.7 7.4 53 33-90 136-193 (293)
310 PRK12557 H(2)-dependent methyl 93.8 3.6 7.9E-05 38.5 15.6 40 219-258 207-246 (342)
311 COG0289 DapB Dihydrodipicolina 93.8 0.54 1.2E-05 42.5 9.4 119 58-189 2-128 (266)
312 PRK08955 glyceraldehyde-3-phos 93.7 1.5 3.2E-05 41.1 12.7 96 59-164 3-121 (334)
313 PRK09287 6-phosphogluconate de 93.7 0.26 5.6E-06 48.1 7.9 165 69-248 1-207 (459)
314 PTZ00434 cytosolic glyceraldeh 93.6 0.35 7.5E-06 45.7 8.2 33 58-90 3-40 (361)
315 PRK14181 bifunctional 5,10-met 93.5 0.24 5.2E-06 45.4 6.9 52 34-90 133-189 (287)
316 PRK08229 2-dehydropantoate 2-r 93.5 0.48 1E-05 43.6 9.1 106 59-178 3-122 (341)
317 PRK00066 ldh L-lactate dehydro 93.5 0.25 5.5E-06 45.7 7.2 32 57-89 5-38 (315)
318 TIGR01761 thiaz-red thiazoliny 93.5 0.84 1.8E-05 42.9 10.6 107 57-184 2-119 (343)
319 PRK09880 L-idonate 5-dehydroge 93.4 1.2 2.6E-05 40.9 11.6 32 57-89 169-201 (343)
320 PLN02775 Probable dihydrodipic 93.4 0.39 8.5E-06 44.0 8.1 114 58-189 11-138 (286)
321 cd01491 Ube1_repeat1 Ubiquitin 93.3 0.15 3.3E-06 46.7 5.3 35 56-90 17-51 (286)
322 PF03721 UDPG_MGDP_dh_N: UDP-g 93.2 0.19 4.2E-06 42.9 5.5 30 59-89 1-30 (185)
323 PTZ00431 pyrroline carboxylate 93.2 0.16 3.5E-06 45.4 5.3 105 57-187 2-115 (260)
324 PRK00436 argC N-acetyl-gamma-g 93.2 0.24 5.2E-06 46.3 6.6 96 59-167 3-102 (343)
325 COG0771 MurD UDP-N-acetylmuram 92.9 0.55 1.2E-05 45.6 8.7 34 56-90 5-38 (448)
326 PRK11730 fadB multifunctional 92.7 0.4 8.7E-06 49.3 7.9 30 59-89 314-343 (715)
327 cd05291 HicDH_like L-2-hydroxy 92.7 0.34 7.3E-06 44.4 6.7 31 59-90 1-33 (306)
328 PF00056 Ldh_1_N: lactate/mala 92.7 0.39 8.4E-06 39.1 6.3 30 59-89 1-33 (141)
329 PRK05579 bifunctional phosphop 92.6 0.5 1.1E-05 45.3 7.9 37 54-91 184-237 (399)
330 PTZ00082 L-lactate dehydrogena 92.6 0.16 3.4E-06 47.2 4.4 33 57-90 5-38 (321)
331 PRK14168 bifunctional 5,10-met 92.5 0.37 7.9E-06 44.4 6.6 52 34-90 141-197 (297)
332 PRK04690 murD UDP-N-acetylmura 92.4 0.2 4.4E-06 48.7 5.2 34 56-90 6-39 (468)
333 PRK05225 ketol-acid reductoiso 92.4 0.07 1.5E-06 51.8 1.9 31 55-85 33-63 (487)
334 PRK12921 2-dehydropantoate 2-r 92.4 0.78 1.7E-05 41.4 8.6 30 59-89 1-30 (305)
335 COG2130 Putative NADP-dependen 92.4 0.58 1.3E-05 43.3 7.6 111 34-164 131-250 (340)
336 COG0300 DltE Short-chain dehyd 92.4 0.36 7.7E-06 43.8 6.3 46 55-111 3-49 (265)
337 COG0677 WecC UDP-N-acetyl-D-ma 92.3 1.1 2.5E-05 42.8 9.7 113 59-180 10-147 (436)
338 COG0059 IlvC Ketol-acid reduct 92.3 0.13 2.9E-06 47.4 3.4 54 56-110 16-73 (338)
339 cd01486 Apg7 Apg7 is an E1-lik 92.3 0.28 6.1E-06 45.3 5.6 31 60-90 1-31 (307)
340 PRK10537 voltage-gated potassi 92.3 0.78 1.7E-05 43.8 8.8 104 57-183 239-352 (393)
341 PRK05447 1-deoxy-D-xylulose 5- 92.3 0.67 1.4E-05 44.2 8.2 45 59-113 2-50 (385)
342 PRK06035 3-hydroxyacyl-CoA deh 92.2 0.4 8.8E-06 43.4 6.5 30 59-89 4-33 (291)
343 KOG2336|consensus 92.2 0.23 5E-06 45.4 4.7 43 46-89 65-113 (422)
344 TIGR02437 FadB fatty oxidation 92.1 0.53 1.2E-05 48.4 7.9 30 59-89 314-343 (714)
345 COG1250 FadB 3-hydroxyacyl-CoA 91.9 0.43 9.2E-06 44.2 6.3 33 57-90 2-34 (307)
346 TIGR02441 fa_ox_alpha_mit fatt 91.8 0.49 1.1E-05 48.8 7.2 30 59-89 336-365 (737)
347 cd05292 LDH_2 A subgroup of L- 91.5 0.97 2.1E-05 41.6 8.3 31 59-89 1-32 (308)
348 PRK06849 hypothetical protein; 91.5 0.91 2E-05 42.8 8.3 33 57-90 3-36 (389)
349 PRK14619 NAD(P)H-dependent gly 91.4 0.35 7.6E-06 44.3 5.2 33 57-90 3-35 (308)
350 TIGR02440 FadJ fatty oxidation 91.3 0.72 1.6E-05 47.3 7.8 30 59-89 305-335 (699)
351 smart00859 Semialdhyde_dh Semi 91.2 0.63 1.4E-05 36.4 5.9 31 60-90 1-33 (122)
352 PRK08339 short chain dehydroge 91.2 0.76 1.6E-05 40.6 7.0 35 54-89 4-39 (263)
353 PRK01710 murD UDP-N-acetylmura 91.1 0.36 7.9E-06 46.7 5.2 34 56-90 12-45 (458)
354 PRK06196 oxidoreductase; Provi 91.1 0.54 1.2E-05 42.7 6.1 36 53-88 21-57 (315)
355 PLN02353 probable UDP-glucose 91.1 1.6 3.5E-05 42.7 9.7 30 59-89 2-33 (473)
356 PRK05717 oxidoreductase; Valid 91.0 0.87 1.9E-05 39.7 7.1 35 54-89 6-41 (255)
357 cd08242 MDR_like Medium chain 90.8 3.9 8.5E-05 36.7 11.5 34 56-89 154-187 (319)
358 PRK08217 fabG 3-ketoacyl-(acyl 90.7 0.98 2.1E-05 38.8 7.1 34 55-89 2-36 (253)
359 PRK00141 murD UDP-N-acetylmura 90.6 0.45 9.8E-06 46.3 5.4 34 56-90 13-46 (473)
360 COG0287 TyrA Prephenate dehydr 90.5 0.82 1.8E-05 41.7 6.6 31 58-89 3-33 (279)
361 PRK07060 short chain dehydroge 90.4 1.1 2.4E-05 38.4 7.2 35 54-89 5-40 (245)
362 TIGR01850 argC N-acetyl-gamma- 90.4 1.1 2.3E-05 42.0 7.6 129 59-200 1-157 (346)
363 PRK07523 gluconate 5-dehydroge 90.3 1 2.2E-05 39.2 7.0 34 55-89 7-41 (255)
364 PRK02006 murD UDP-N-acetylmura 90.3 0.47 1E-05 46.4 5.3 36 55-91 4-39 (498)
365 PTZ00117 malate dehydrogenase; 90.2 0.38 8.2E-06 44.5 4.3 34 56-90 3-37 (319)
366 PRK12439 NAD(P)H-dependent gly 90.0 1.1 2.3E-05 41.8 7.2 97 58-167 7-114 (341)
367 PRK07236 hypothetical protein; 90.0 0.59 1.3E-05 43.7 5.5 42 55-97 3-44 (386)
368 PRK08192 aspartate carbamoyltr 90.0 2.6 5.6E-05 39.5 9.7 108 21-142 121-234 (338)
369 PRK04308 murD UDP-N-acetylmura 89.9 0.62 1.3E-05 44.7 5.7 35 55-90 2-36 (445)
370 cd01489 Uba2_SUMO Ubiquitin ac 89.9 0.85 1.8E-05 42.3 6.3 31 60-90 1-31 (312)
371 TIGR01381 E1_like_apg7 E1-like 89.8 0.42 9.1E-06 48.4 4.5 74 17-90 292-370 (664)
372 PRK06125 short chain dehydroge 89.8 1.2 2.7E-05 38.8 7.1 35 54-89 3-38 (259)
373 cd08293 PTGR2 Prostaglandin re 89.8 2.3 4.9E-05 38.7 9.1 32 58-89 155-188 (345)
374 PRK11154 fadJ multifunctional 89.8 1.1 2.3E-05 46.1 7.6 30 59-89 310-340 (708)
375 PRK10309 galactitol-1-phosphat 89.7 4.7 0.0001 36.9 11.2 34 56-89 159-192 (347)
376 PRK05867 short chain dehydroge 89.7 1.3 2.7E-05 38.6 7.0 34 55-89 6-40 (253)
377 PRK11891 aspartate carbamoyltr 89.7 2.6 5.6E-05 40.8 9.6 109 21-143 203-317 (429)
378 PRK00683 murD UDP-N-acetylmura 89.5 0.58 1.3E-05 44.6 5.1 33 57-90 2-34 (418)
379 TIGR00670 asp_carb_tr aspartat 89.4 3.3 7.3E-05 38.1 9.8 105 21-143 116-225 (301)
380 PRK01390 murD UDP-N-acetylmura 89.3 0.62 1.3E-05 44.9 5.2 34 56-90 7-40 (460)
381 PRK05872 short chain dehydroge 89.3 1.3 2.9E-05 39.8 7.1 34 55-89 6-40 (296)
382 KOG1207|consensus 89.2 1.3 2.8E-05 38.1 6.3 36 54-89 3-39 (245)
383 PF02558 ApbA: Ketopantoate re 89.1 1.1 2.3E-05 36.1 5.7 97 61-170 1-107 (151)
384 PRK05876 short chain dehydroge 89.1 1.4 3.1E-05 39.3 7.0 34 55-89 3-37 (275)
385 PRK09291 short chain dehydroge 89.0 2 4.4E-05 37.2 7.8 32 58-89 2-34 (257)
386 PRK12826 3-ketoacyl-(acyl-carr 89.0 1.4 3E-05 37.8 6.8 35 55-89 3-38 (251)
387 PRK08818 prephenate dehydrogen 89.0 1.5 3.3E-05 41.5 7.5 33 57-90 3-37 (370)
388 PRK06949 short chain dehydroge 89.0 1.7 3.6E-05 37.7 7.3 33 55-87 6-39 (258)
389 PLN02896 cinnamyl-alcohol dehy 89.0 0.9 1.9E-05 41.9 5.8 37 53-89 5-42 (353)
390 COG0240 GpsA Glycerol-3-phosph 88.9 1.2 2.6E-05 41.6 6.5 95 59-166 2-107 (329)
391 COG1004 Ugd Predicted UDP-gluc 88.9 4.6 9.9E-05 38.7 10.4 187 59-258 1-252 (414)
392 PRK08628 short chain dehydroge 88.8 0.81 1.8E-05 39.8 5.1 35 53-87 2-37 (258)
393 PRK07825 short chain dehydroge 88.8 1.6 3.4E-05 38.4 7.1 34 55-89 2-36 (273)
394 PRK07062 short chain dehydroge 88.7 1.6 3.4E-05 38.3 6.9 35 54-89 4-39 (265)
395 TIGR01832 kduD 2-deoxy-D-gluco 88.7 0.88 1.9E-05 39.3 5.3 34 55-88 2-36 (248)
396 PRK06249 2-dehydropantoate 2-r 88.6 0.62 1.3E-05 42.7 4.4 34 55-88 2-35 (313)
397 cd08281 liver_ADH_like1 Zinc-d 88.6 2.9 6.3E-05 38.9 9.0 32 57-89 191-223 (371)
398 PRK13394 3-hydroxybutyrate deh 88.6 1.5 3.3E-05 37.9 6.8 33 55-87 4-37 (262)
399 KOG0029|consensus 88.6 0.65 1.4E-05 45.8 4.8 40 55-95 12-55 (501)
400 PLN02514 cinnamyl-alcohol dehy 88.5 3 6.6E-05 38.6 9.1 41 49-89 172-212 (357)
401 PRK12936 3-ketoacyl-(acyl-carr 88.5 1.5 3.2E-05 37.6 6.5 34 55-89 3-37 (245)
402 PRK12742 oxidoreductase; Provi 88.5 3 6.5E-05 35.6 8.5 33 55-87 3-36 (237)
403 KOG1196|consensus 88.5 2.8 6.1E-05 38.8 8.4 118 27-166 130-256 (343)
404 COG3804 Uncharacterized conser 88.4 1 2.2E-05 41.3 5.5 36 58-93 2-38 (350)
405 PRK09072 short chain dehydroge 88.4 1.7 3.8E-05 37.9 7.0 33 55-87 2-35 (263)
406 PRK08265 short chain dehydroge 88.3 1.7 3.6E-05 38.2 6.9 34 55-89 3-37 (261)
407 PRK07063 short chain dehydroge 88.3 1.7 3.6E-05 37.9 6.9 34 55-89 4-38 (260)
408 TIGR03366 HpnZ_proposed putati 88.3 3.1 6.8E-05 37.0 8.8 40 48-89 112-152 (280)
409 TIGR03736 PRTRC_ThiF PRTRC sys 88.3 0.67 1.5E-05 41.5 4.3 25 57-81 10-34 (244)
410 PRK06057 short chain dehydroge 88.3 1.7 3.6E-05 37.9 6.8 34 55-89 4-38 (255)
411 cd05293 LDH_1 A subgroup of L- 88.2 1.6 3.5E-05 40.3 6.9 31 58-89 3-35 (312)
412 TIGR03325 BphB_TodD cis-2,3-di 88.2 1.8 4E-05 37.8 7.1 34 55-89 2-36 (262)
413 PRK06194 hypothetical protein; 88.2 1.7 3.6E-05 38.5 6.8 34 55-89 3-37 (287)
414 PRK08849 2-octaprenyl-3-methyl 88.1 0.84 1.8E-05 42.7 5.1 33 58-91 3-35 (384)
415 PLN02586 probable cinnamyl alc 88.1 1.9 4.2E-05 40.1 7.4 34 56-89 182-215 (360)
416 PRK08013 oxidoreductase; Provi 88.1 0.79 1.7E-05 43.2 4.9 34 57-91 2-35 (400)
417 cd05283 CAD1 Cinnamyl alcohol 88.0 5.7 0.00012 36.1 10.5 39 50-89 163-201 (337)
418 PRK05866 short chain dehydroge 88.0 1.9 4.1E-05 38.9 7.1 36 53-89 35-71 (293)
419 PRK08085 gluconate 5-dehydroge 87.9 1.9 4.2E-05 37.4 7.0 34 55-89 6-40 (254)
420 TIGR03628 arch_S11P archaeal r 87.9 2.4 5.3E-05 33.6 6.8 63 29-91 36-107 (114)
421 PRK06223 malate dehydrogenase; 87.9 0.59 1.3E-05 42.6 3.8 31 59-90 3-34 (307)
422 PRK10637 cysG siroheme synthas 87.9 1.3 2.8E-05 43.0 6.4 82 54-151 8-89 (457)
423 TIGR03855 NAD_NadX aspartate d 87.9 0.92 2E-05 40.2 4.9 86 81-183 1-92 (229)
424 PRK00421 murC UDP-N-acetylmura 87.8 0.83 1.8E-05 44.1 5.0 34 56-90 5-39 (461)
425 PRK05562 precorrin-2 dehydroge 87.8 1 2.2E-05 39.8 5.1 83 55-153 22-104 (223)
426 PRK07774 short chain dehydroge 87.8 2 4.2E-05 37.1 6.9 34 55-89 3-37 (250)
427 PF03853 YjeF_N: YjeF-related 87.7 3.8 8.3E-05 34.2 8.4 48 35-86 6-57 (169)
428 PRK07831 short chain dehydroge 87.7 1.7 3.6E-05 38.0 6.5 33 56-89 15-49 (262)
429 PRK06138 short chain dehydroge 87.7 1.1 2.4E-05 38.6 5.3 34 55-88 2-36 (252)
430 PRK06124 gluconate 5-dehydroge 87.7 2.2 4.7E-05 37.1 7.1 35 54-89 7-42 (256)
431 KOG1198|consensus 87.6 2.9 6.2E-05 39.3 8.3 77 57-149 157-240 (347)
432 cd08237 ribitol-5-phosphate_DH 87.6 2.3 5E-05 39.1 7.6 32 57-89 163-196 (341)
433 PLN02206 UDP-glucuronate decar 87.6 1 2.3E-05 43.5 5.5 36 53-88 114-150 (442)
434 PRK08416 7-alpha-hydroxysteroi 87.5 2.1 4.6E-05 37.5 7.0 36 54-89 4-40 (260)
435 PRK07494 2-octaprenyl-6-methox 87.5 0.93 2E-05 42.2 5.0 35 56-91 5-39 (388)
436 TIGR02819 fdhA_non_GSH formald 87.5 1.9 4.1E-05 40.9 7.1 33 57-89 185-217 (393)
437 PRK07231 fabG 3-ketoacyl-(acyl 87.4 1.3 2.8E-05 38.1 5.5 34 55-88 2-36 (251)
438 PRK06172 short chain dehydroge 87.4 2.3 4.9E-05 36.9 7.1 33 55-87 4-37 (253)
439 PRK06300 enoyl-(acyl carrier p 87.4 1.1 2.4E-05 41.1 5.2 36 53-89 3-41 (299)
440 PRK12829 short chain dehydroge 87.4 2 4.3E-05 37.3 6.7 33 55-87 8-41 (264)
441 cd08298 CAD2 Cinnamyl alcohol 87.3 7.8 0.00017 34.8 10.8 34 56-89 166-199 (329)
442 PRK06184 hypothetical protein; 87.3 1.5 3.2E-05 42.8 6.4 35 57-92 2-36 (502)
443 PF01494 FAD_binding_3: FAD bi 87.2 1 2.2E-05 40.5 4.9 33 59-92 2-34 (356)
444 PRK14804 ornithine carbamoyltr 87.2 6.7 0.00015 36.3 10.4 68 21-92 118-187 (311)
445 PRK05557 fabG 3-ketoacyl-(acyl 87.2 1.5 3.3E-05 37.3 5.9 35 55-89 2-37 (248)
446 PLN02602 lactate dehydrogenase 87.2 1.8 4E-05 40.7 6.7 31 59-90 38-70 (350)
447 PRK07890 short chain dehydroge 87.2 1.9 4.2E-05 37.3 6.5 33 56-89 3-36 (258)
448 PF00185 OTCace: Aspartate/orn 87.1 0.86 1.9E-05 37.9 4.0 74 57-144 1-83 (158)
449 KOG0024|consensus 87.0 4 8.7E-05 38.2 8.6 76 57-145 169-253 (354)
450 PRK08263 short chain dehydroge 87.0 1.9 4.1E-05 38.1 6.5 32 57-89 2-34 (275)
451 PRK07576 short chain dehydroge 87.0 2.3 5E-05 37.4 7.0 33 55-87 6-39 (264)
452 PRK08862 short chain dehydroge 87.0 2.2 4.8E-05 37.0 6.7 34 55-89 2-36 (227)
453 PRK09186 flagellin modificatio 86.9 2.2 4.7E-05 36.9 6.7 32 56-87 2-34 (256)
454 PRK05786 fabG 3-ketoacyl-(acyl 86.9 1.5 3.2E-05 37.6 5.6 34 55-88 2-36 (238)
455 PRK12771 putative glutamate sy 86.9 0.99 2.1E-05 44.9 5.0 34 56-90 135-168 (564)
456 PRK12769 putative oxidoreducta 86.9 1.1 2.3E-05 45.5 5.3 34 56-90 325-358 (654)
457 PRK07067 sorbitol dehydrogenas 86.8 2.4 5.2E-05 36.8 6.9 34 55-89 3-37 (257)
458 cd05290 LDH_3 A subgroup of L- 86.7 2.1 4.5E-05 39.5 6.7 29 60-89 1-31 (307)
459 TIGR03376 glycerol3P_DH glycer 86.7 1.7 3.6E-05 40.9 6.1 80 60-147 1-95 (342)
460 PRK08945 putative oxoacyl-(acy 86.6 2.2 4.8E-05 36.8 6.6 34 55-89 9-43 (247)
461 PRK07035 short chain dehydroge 86.6 2.5 5.5E-05 36.5 7.0 33 55-87 5-38 (252)
462 TIGR01763 MalateDH_bact malate 86.6 3.3 7.2E-05 38.1 8.0 31 59-90 2-33 (305)
463 COG1004 Ugd Predicted UDP-gluc 86.6 3.9 8.4E-05 39.2 8.5 90 56-166 308-410 (414)
464 PRK09987 dTDP-4-dehydrorhamnos 86.6 2.9 6.3E-05 37.7 7.6 28 59-87 1-29 (299)
465 PRK07984 enoyl-(acyl carrier p 86.6 1.3 2.8E-05 39.3 5.2 33 56-89 4-39 (262)
466 PRK12429 3-hydroxybutyrate deh 86.5 2.5 5.5E-05 36.4 6.9 32 56-87 2-34 (258)
467 TIGR03570 NeuD_NnaD sugar O-ac 86.5 1.4 2.9E-05 36.8 5.0 32 60-91 1-32 (201)
468 PRK12828 short chain dehydroge 86.4 1.4 3E-05 37.4 5.1 33 55-87 4-37 (239)
469 PRK07478 short chain dehydroge 86.4 2.6 5.7E-05 36.5 7.0 33 55-87 3-36 (254)
470 PLN02240 UDP-glucose 4-epimera 86.4 1.5 3.2E-05 40.2 5.6 34 55-88 2-36 (352)
471 PRK06841 short chain dehydroge 86.4 1.5 3.3E-05 37.9 5.5 33 55-87 12-45 (255)
472 PF02629 CoA_binding: CoA bind 86.4 0.73 1.6E-05 34.8 3.0 33 57-89 2-35 (96)
473 PRK06199 ornithine cyclodeamin 86.3 5.3 0.00011 38.0 9.4 99 34-144 132-233 (379)
474 PRK12833 acetyl-CoA carboxylas 86.3 7.9 0.00017 37.6 10.8 30 59-88 6-35 (467)
475 PRK01368 murD UDP-N-acetylmura 86.2 1 2.2E-05 43.8 4.5 32 57-90 5-36 (454)
476 KOG0023|consensus 86.2 7.1 0.00015 36.6 9.8 43 47-90 172-214 (360)
477 PRK12939 short chain dehydroge 86.2 2.8 6E-05 36.0 7.0 33 55-87 4-37 (250)
478 PF13460 NAD_binding_10: NADH( 86.2 1.6 3.5E-05 35.9 5.2 30 61-90 1-31 (183)
479 PRK12938 acetyacetyl-CoA reduc 86.2 1.7 3.6E-05 37.5 5.5 34 56-89 1-35 (246)
480 PRK05714 2-octaprenyl-3-methyl 86.2 1.1 2.4E-05 42.1 4.7 32 59-91 3-34 (405)
481 CHL00041 rps11 ribosomal prote 86.2 3.2 6.8E-05 32.9 6.6 62 32-93 49-111 (116)
482 PLN02172 flavin-containing mon 86.1 1.2 2.6E-05 43.4 5.0 34 56-90 8-41 (461)
483 COG0654 UbiH 2-polyprenyl-6-me 86.1 1.2 2.5E-05 42.0 4.8 33 58-91 2-34 (387)
484 TIGR00978 asd_EA aspartate-sem 86.0 1.9 4E-05 40.3 6.1 32 59-90 1-34 (341)
485 PLN00141 Tic62-NAD(P)-related 86.0 1.6 3.5E-05 38.1 5.5 35 55-89 14-49 (251)
486 PRK06753 hypothetical protein; 85.9 1.2 2.6E-05 41.2 4.8 31 59-90 1-31 (373)
487 PRK07814 short chain dehydroge 85.9 2.8 6.1E-05 36.7 6.9 34 55-89 7-41 (263)
488 PRK06567 putative bifunctional 85.9 1.3 2.7E-05 47.2 5.3 34 56-90 381-414 (1028)
489 PRK08850 2-octaprenyl-6-methox 85.9 1.2 2.7E-05 41.9 4.9 33 58-91 4-36 (405)
490 PRK09607 rps11p 30S ribosomal 85.9 3.7 8E-05 33.4 6.9 64 30-93 44-116 (132)
491 PRK08213 gluconate 5-dehydroge 85.9 2.9 6.3E-05 36.4 7.0 35 54-89 8-43 (259)
492 PRK07097 gluconate 5-dehydroge 85.8 2.8 6.1E-05 36.7 6.9 34 55-89 7-41 (265)
493 TIGR02822 adh_fam_2 zinc-bindi 85.8 6.2 0.00013 36.1 9.4 31 57-87 165-195 (329)
494 PRK09126 hypothetical protein; 85.8 1.2 2.6E-05 41.5 4.7 34 57-91 2-35 (392)
495 PRK08703 short chain dehydroge 85.8 1.7 3.6E-05 37.4 5.3 33 55-87 3-36 (239)
496 PRK01713 ornithine carbamoyltr 85.8 5.2 0.00011 37.4 8.9 66 21-90 122-189 (334)
497 PRK06500 short chain dehydroge 85.7 3.3 7E-05 35.6 7.1 33 55-87 3-36 (249)
498 PRK06139 short chain dehydroge 85.7 2.6 5.6E-05 39.0 6.9 34 55-89 4-38 (330)
499 PRK07326 short chain dehydroge 85.7 2.9 6.3E-05 35.7 6.8 32 56-87 4-36 (237)
500 PRK02705 murD UDP-N-acetylmura 85.7 1.3 2.8E-05 42.6 5.0 30 60-90 2-31 (459)
No 1
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=9.8e-76 Score=552.71 Aligned_cols=260 Identities=45% Similarity=0.794 Sum_probs=255.4
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++.|++ +++|||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|.++
T Consensus 150 M~w~~d~y~~~~g~~-~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~ 228 (410)
T PLN02477 150 MAWILDEYSKFHGFS-PAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK 228 (410)
T ss_pred HHHHHHHHHHhhCCC-CceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc
Confidence 899999999999987 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEE
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKII 160 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiI 160 (262)
|++||+|+|++|++|||+|||+++|++++++++++.+|++++.++ +++++..+||||+|||++++||++|+++++||+|
T Consensus 229 GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~-~~e~l~~~~DvliP~Al~~~I~~~na~~i~ak~I 307 (410)
T PLN02477 229 GGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPID-PDDILVEPCDVLIPAALGGVINKENAADVKAKFI 307 (410)
T ss_pred CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEec-CccceeccccEEeeccccccCCHhHHHHcCCcEE
Confidence 999999999999999999999999999999999999999888888 8899999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy14499 161 LEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240 (262)
Q Consensus 161 ve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~ 240 (262)
+||||+|+||+|+++|++|||+|+||+++|+|||++|||||+||+++++|++++|.++|+++|.++++++++.|++++++
T Consensus 308 ~egAN~p~t~ea~~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~ 387 (410)
T PLN02477 308 VEAANHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNCS 387 (410)
T ss_pred EeCCCCCCCHHHHHHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q psy14499 241 LRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 241 ~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
||+|||++|++||.++|+.|||
T Consensus 388 ~r~aA~~~a~~rv~~a~~~rG~ 409 (410)
T PLN02477 388 LRMGAFTLGVNRVARATVLRGW 409 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999997
No 2
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-75 Score=543.06 Aligned_cols=261 Identities=46% Similarity=0.815 Sum_probs=255.9
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|||+++.|.+.+|++||||+++|||.+|.++|||||+++++++++.+|.+++|+||+||||||||+.+|+.|++.
T Consensus 150 m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~ 229 (411)
T COG0334 150 MAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL 229 (411)
T ss_pred HHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEE
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKII 160 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiI 160 (262)
|++||+++|++|.||||+|||+++|++.+++.+++..|++++.++ .+++|+.+||||+|||++|+||.+|+++++||+|
T Consensus 230 GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~-~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~V 308 (411)
T COG0334 230 GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYIT-NEELLEVDCDILIPCALENVITEDNADQLKAKIV 308 (411)
T ss_pred CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEcc-ccccccccCcEEcccccccccchhhHHHhhhcEE
Confidence 999999999999999999999999998888888999999999998 8899999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy14499 161 LEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240 (262)
Q Consensus 161 ve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~ 240 (262)
+||||+|+|+||+++|.+|||+|+||+++|+|||++||+||.||.++++|++|+|.++|+++|.++++.+.+.+++++++
T Consensus 309 ~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~~~~~~~ 388 (411)
T COG0334 309 VEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYGVD 388 (411)
T ss_pred EeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q psy14499 241 LRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 241 ~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+|+|||++|++||+++|+.|||
T Consensus 389 ~r~aA~~~a~~Rva~Am~~~G~ 410 (411)
T COG0334 389 LRTAAYILAFERVADAMKARGW 410 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999996
No 3
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-74 Score=547.16 Aligned_cols=260 Identities=27% Similarity=0.407 Sum_probs=252.0
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++.+++ +++|||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|.+.
T Consensus 172 M~w~~d~y~~~~~~~-~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~ 250 (445)
T PRK14030 172 VGYMFGMYKKLTREF-TGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL 250 (445)
T ss_pred HHHHHHHHHhccCcc-ccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 899999999999876 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHH---HHHHHHhcCCcc-----CCCCceecCCCccccccCceEEeeCCccCcccccch
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPK---LQKYVTFTRSIK-----DFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNA 152 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~---l~~~~~~~g~~~-----~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a 152 (262)
|++||+|||++|+||||+|||+++ |++++++++++. .||+++.++ ++++|+.+||||+|||++|+||.+|+
T Consensus 251 GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~-~~~~~~~~cDVliPcAl~n~I~~~na 329 (445)
T PRK14030 251 GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFA-GKKPWEQKVDIALPCATQNELNGEDA 329 (445)
T ss_pred CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcC-CccceeccccEEeeccccccCCHHHH
Confidence 999999999999999999999988 788888888775 778888887 88999999999999999999999999
Q ss_pred hcc---CceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy14499 153 NNV---TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229 (262)
Q Consensus 153 ~~~---~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 229 (262)
+++ +||+|+||||+|+||+|+++|++|||+|+||+++|+|||++||+||+||+++++|++++|.++|+++|.+++++
T Consensus 330 ~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~ 409 (445)
T PRK14030 330 DKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQ 409 (445)
T ss_pred HHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 230 IWELANTKK--VSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 230 v~~~a~~~~--~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+++.+++++ +++|+|||++|++||+++|..||+
T Consensus 410 v~~~~~~~~~~~~lr~aA~~~a~~rva~a~~~rG~ 444 (445)
T PRK14030 410 CVKYGKEGDGYINYVKGANIAGFMKVAKAMLAQGV 444 (445)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999 999999999999999999999996
No 4
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=2.9e-72 Score=499.15 Aligned_cols=241 Identities=34% Similarity=0.568 Sum_probs=229.9
Q ss_pred ecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCC
Q psy14499 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGF 100 (262)
Q Consensus 21 tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~Gl 100 (262)
||||+.+|||.+|.++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|++||+|+|++|++|||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHH---HHHHHhcCC-ccCCC----CceecCCCccccccCceEEeeCCccCcccccchhcc---CceEEEecCCCCCC
Q psy14499 101 NIPKL---QKYVTFTRS-IKDFN----EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTT 169 (262)
Q Consensus 101 D~~~l---~~~~~~~g~-~~~~~----~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t 169 (262)
|+++| .+++++.++ +.+|+ +++.++ ++++|+.+||||+|||++++||.+|++++ +||+|+|+||+|+|
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~-~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t 159 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE-GKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCT 159 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC-CcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCC
Confidence 99988 555665555 45553 567777 88999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCHHHHHHH
Q psy14499 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKK--VSLRTAAFI 247 (262)
Q Consensus 170 ~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~--~~~r~aa~~ 247 (262)
|+|+++|++|||+|+||+++|+|||++|||||+||+++++|++++|.++|+++|.++++++++.+++++ ++||+|||+
T Consensus 160 ~~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~ 239 (254)
T cd05313 160 AEAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGDPPDLVAGANI 239 (254)
T ss_pred HHHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHcCC
Q psy14499 248 IGCTRVLQAHKTRGL 262 (262)
Q Consensus 248 ~a~~rv~~a~~~rg~ 262 (262)
+|++||.++|+.||+
T Consensus 240 ~a~~rv~~a~~~rG~ 254 (254)
T cd05313 240 AGFLKVADAMLAQGV 254 (254)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999995
No 5
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-72 Score=533.43 Aligned_cols=260 Identities=30% Similarity=0.501 Sum_probs=250.9
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++.++.. |++||||+.+||+.+|.++|||||++++++++++++.+++|+||+||||||||+++|++|.+.
T Consensus 176 M~~~~d~y~~~~~~~~-g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~ 254 (445)
T PRK09414 176 IGYLFGQYKRLTNRFE-GVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQL 254 (445)
T ss_pred HHHHHHHHHhhcCcce-EEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 8999999999998775 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc-CCccCCC---CceecCCCccccccCceEEeeCCccCcccccchhcc-
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT-RSIKDFN---EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV- 155 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~-g~~~~~~---~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~- 155 (262)
|++||+|+|++|++|||+|||+++|+++++++ +++.+|+ +++.++ ++++++.+||||||||++|+||++|+.++
T Consensus 255 GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~-~~~i~~~d~DVliPaAl~n~It~~~a~~i~ 333 (445)
T PRK09414 255 GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLE-GGSPWSVPCDIALPCATQNELDEEDAKTLI 333 (445)
T ss_pred CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecC-CccccccCCcEEEecCCcCcCCHHHHHHHH
Confidence 99999999999999999999999999999876 5788887 445666 78899999999999999999999999999
Q ss_pred --CceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy14499 156 --TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWEL 233 (262)
Q Consensus 156 --~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~ 233 (262)
+||+|+||||+|+||+|+++|++|||+|+||+++|+|||++||+||+||.++.+|++++|.++|+++|.++++++++.
T Consensus 334 ~~~akiIvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~~~m~~~~~~~~~~ 413 (445)
T PRK09414 334 ANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDIMKNIHHACVET 413 (445)
T ss_pred HcCCeEEEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC--CCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 234 ANTKK--VSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 234 a~~~~--~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+++++ ++||+|||++|++||.+||+.|||
T Consensus 414 ~~~~~~~~~~r~aA~~~a~~rv~~a~~~rG~ 444 (445)
T PRK09414 414 AEEYGKPGNYVAGANIAGFVKVADAMLAQGV 444 (445)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999 999999999999999999999996
No 6
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=4e-71 Score=523.19 Aligned_cols=260 Identities=31% Similarity=0.544 Sum_probs=247.9
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++.+++ ++++||||+.+|||.+|.++|||||++++++++++++.+++|+||+||||||||+++|++|.+.
T Consensus 181 m~~~~~~y~~~~~~~-~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~ 259 (454)
T PTZ00079 181 IGYLFGQYKKLRNNF-EGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL 259 (454)
T ss_pred HHHHHHHHHHHhCCC-CceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 899999999999877 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHH---HHHHHhc-CCccCCC----CceecCCCccccccCceEEeeCCccCcccccch
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKL---QKYVTFT-RSIKDFN----EGEKINDSKEFWSIPCDILIPAAIEDQITINNA 152 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l---~~~~~~~-g~~~~~~----~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a 152 (262)
|++||+|||++|+||||+|||+++| .++++.+ +++.+|+ +++.++ ++++|+.+||||+|||.+|.||.++|
T Consensus 260 GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~-~~~~~~~~cDI~iPcA~~n~I~~~~a 338 (454)
T PTZ00079 260 GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVP-GKKPWEVPCDIAFPCATQNEINLEDA 338 (454)
T ss_pred CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeC-CcCcccCCccEEEeccccccCCHHHH
Confidence 9999999999999999999999887 5566544 7777774 467777 78899999999999999999999999
Q ss_pred hcc---CceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy14499 153 NNV---TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229 (262)
Q Consensus 153 ~~~---~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 229 (262)
+++ +||+|+||||+|+||+|+++|++|||+|+||+++|+|||++||+||.||.++++|++|+|.++|+++|.+++++
T Consensus 339 ~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~~~M~~~~~~ 418 (454)
T PTZ00079 339 KLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEA 418 (454)
T ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 988 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 230 IWELANTK--KVSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 230 v~~~a~~~--~~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+++.|+++ +.++|++||+.|++||+++|..||+
T Consensus 419 ~~~~a~~~~~~~~~r~~A~i~~~~rva~Am~~~G~ 453 (454)
T PTZ00079 419 CVKYAEKYGGKSDLVAGANIAGFLKVADSMIEQGC 453 (454)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999998 5899999999999999999999996
No 7
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=9.5e-71 Score=521.58 Aligned_cols=260 Identities=28% Similarity=0.453 Sum_probs=247.4
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++.++. +|++||||+.+|||.+|.++|||||+++++++++++|.+|+|+||+||||||||+++|++|.++
T Consensus 172 M~~i~d~y~~~~~~~-~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~ 250 (444)
T PRK14031 172 VGFMFGMYKKLSHEF-TGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL 250 (444)
T ss_pred HHHHHHHHHhhcCCc-ceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 899999999999876 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHH---HHHHh-cCCccCCC---CceecCCCccccccCceEEeeCCccCcccccchh
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQ---KYVTF-TRSIKDFN---EGEKINDSKEFWSIPCDILIPAAIEDQITINNAN 153 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~---~~~~~-~g~~~~~~---~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~ 153 (262)
|++||+|+|++|++|||+|||+.++. ++++. ++++.+|+ +++.++ .+++|+.+||||+||+++++||.+|++
T Consensus 251 GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~-~d~~~~~~cDIliPaAl~n~I~~~na~ 329 (444)
T PRK14031 251 GGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE-GARPWGEKGDIALPSATQNELNGDDAR 329 (444)
T ss_pred CCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC-CcccccCCCcEEeecccccccCHHHHH
Confidence 99999999999999999999999886 44444 56777776 556676 889999999999999999999999999
Q ss_pred ccCce---EEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14499 154 NVTAK---IILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAI 230 (262)
Q Consensus 154 ~~~~k---iIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v 230 (262)
+++|+ +|+||||+|+||+|+++|++|||.++||+++|+|||++|||||+||+++++|++++|.++|+++|.++++++
T Consensus 330 ~l~a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~m~~~~~~v 409 (444)
T PRK14031 330 QLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSIMKNIHEAC 409 (444)
T ss_pred HHHhcCCeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99876 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--CCCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 231 WELANTK--KVSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 231 ~~~a~~~--~~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
++.++++ ++++|+|||++|++||+++|+.||+
T Consensus 410 ~~~~~~~~~~~~~r~aA~~~a~~rva~a~~~~G~ 443 (444)
T PRK14031 410 VQYGTEADGYVNYVKGANVAGFMKVAKAMMAQGI 443 (444)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999988 6999999999999999999999996
No 8
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=6.3e-66 Score=458.14 Aligned_cols=233 Identities=46% Similarity=0.756 Sum_probs=222.3
Q ss_pred CccCCCCChhHHHHHHHHHHHHHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHH
Q psy14499 28 GGSFGRQKATGRGVFIIGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQ 106 (262)
Q Consensus 28 GG~~~~~~aTg~Gv~~~~~~~~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~ 106 (262)
|||++|.++|||||++++++++++++. +++++||+|||||+||+++|++|.+.|+++|+|+|++|++|||+|||+++|.
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~ 80 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELL 80 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHH
Confidence 899999999999999999999999987 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-ccCCC-----CceecCCC-ccccccCceEEeeCCccCcccccchh-ccC--ceEEEecCCCCCCHHHHHHH
Q psy14499 107 KYVTFTRS-IKDFN-----EGEKINDS-KEFWSIPCDILIPAAIEDQITINNAN-NVT--AKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 107 ~~~~~~g~-~~~~~-----~~~~~~~~-~~il~~~~DIlipaa~~~~it~e~a~-~~~--~kiIve~AN~p~t~ea~~~l 176 (262)
+++++.+. +..|+ +.+.++ . +++|+.+||||+||+.+++||++|++ .++ ||+|+||||+|+||+++++|
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L 159 (244)
T PF00208_consen 81 RIKEERGSRVDDYPLESPDGAEYIP-NDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEIL 159 (244)
T ss_dssp HHHHHHSSHSTTGTHTCSSTSEEEC-HHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHH
T ss_pred HHHHHhCCcccccccccccceeEec-cccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHH
Confidence 99999888 98887 456676 4 38999999999999999999999999 998 99999999999999999999
Q ss_pred HHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy14499 177 RDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQA 256 (262)
Q Consensus 177 ~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~~a 256 (262)
++|||+|+|||++|+|||++||+||+|++++++|+++++.++++++|.++++++++.|++++++||++||++|++||.++
T Consensus 160 ~~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~~~aA~~~A~~rv~~a 239 (244)
T PF00208_consen 160 RERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAEEEGISLRQAAYILAFERVAAA 239 (244)
T ss_dssp HHTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q psy14499 257 HKTRG 261 (262)
Q Consensus 257 ~~~rg 261 (262)
|+.||
T Consensus 240 ~~~rG 244 (244)
T PF00208_consen 240 MKLRG 244 (244)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 99998
No 9
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=3.3e-63 Score=436.58 Aligned_cols=226 Identities=49% Similarity=0.860 Sum_probs=221.0
Q ss_pred CccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHH
Q psy14499 28 GGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQK 107 (262)
Q Consensus 28 GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~ 107 (262)
||+.+|.++|||||++++++++++++.+++++||+|||||+||++++++|.++|++||+|+|++|++|||+|||++++++
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~ 80 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA 80 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 108 YVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
++++++++.+|++++.++ ++++++.+||||+||+++++||++++++++||+|+|+||+|+||+++++|++|||+|+||+
T Consensus 81 ~~~~~g~l~~~~~~~~~~-~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~ 159 (227)
T cd01076 81 YKKEHGSVLGFPGAERIT-NEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDI 159 (227)
T ss_pred HHHhcCCcccCCCceecC-CccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChH
Confidence 999999999998877777 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14499 188 ITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVL 254 (262)
Q Consensus 188 ~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~ 254 (262)
++|+|||++||+||.||+++..|+++++.+++++.|.+++.++++.+++++++||++||.+|++||.
T Consensus 160 ~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~~~~~aA~~~a~~rl~ 226 (227)
T cd01076 160 LANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVA 226 (227)
T ss_pred HhcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
No 10
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=7.7e-61 Score=418.87 Aligned_cols=217 Identities=34% Similarity=0.615 Sum_probs=209.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
+|||||++++++++++++.+|+++||+||||||||+++|++|.++|+++|+|+|++|++||| |||++++++++++.+++
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~ 79 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGS 79 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999 99999999999888888
Q ss_pred cCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 116 KDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 116 ~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
..||..+.++ .+++++.+||||+||+++|+||++++++++||+|+|+||+|+||+++++|++|||+|+||+++|+|||+
T Consensus 80 ~~~~~~~~~~-~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd~~~NaGGvi 158 (217)
T cd05211 80 ARVKVQDYFP-GEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVI 158 (217)
T ss_pred cccCcccccC-cccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhcCCCeE
Confidence 8887666666 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14499 196 VSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVL 254 (262)
Q Consensus 196 ~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~ 254 (262)
+||+||.||.++++|++++|.+++++.|.++++++++.|+++++|||+|||++|++||+
T Consensus 159 ~s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rva 217 (217)
T cd05211 159 VSYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERIA 217 (217)
T ss_pred eEHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999984
No 11
>KOG2250|consensus
Probab=100.00 E-value=1.5e-59 Score=439.51 Aligned_cols=259 Identities=40% Similarity=0.643 Sum_probs=232.0
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhC--CCCCCCeEEEEcCCHHHHHHHHHHH
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKIN--LNIINSKISIQGFGNVGSVAANLFF 78 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g--~~l~~~~v~IqGfG~VG~~~a~~L~ 78 (262)
|+|++|+|+++.|+ +++++||||+.+|||++|.++|||||+++++.+++.++ .+++++||+||||||||++.+++|+
T Consensus 193 m~~if~~Ya~~~g~-~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~ 271 (514)
T KOG2250|consen 193 MGWIFDEYAKTHGH-WKAVVTGKPISLGGSHGRYEATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLS 271 (514)
T ss_pred hhhhHHHHHHhhcc-cceeeeCCCCccCCccCcccccchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHH
Confidence 89999999999987 79999999999999999999999999999999999998 5799999999999999999999999
Q ss_pred HCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc-------cccccCceEEeeCCccCcccccc
Q psy14499 79 KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK-------EFWSIPCDILIPAAIEDQITINN 151 (262)
Q Consensus 79 ~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~-------~il~~~~DIlipaa~~~~it~e~ 151 (262)
+.|.++|+|+|++|+++||+|||+.+|.+++++++++.+|+++.... .. ..+..+||||+||+.+|.||.+|
T Consensus 272 ~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k~~i~~f~~~~~~~-~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~n 350 (514)
T KOG2250|consen 272 EKGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKSFDGAKLSY-EGYIAGLPPWTLVEKCDILVPCATQNEITGEN 350 (514)
T ss_pred hcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhhccccccccccccC-ccccccCcchhhHhhCcEEeecCccCcccHhh
Confidence 99999999999999999999999999999999999999998776443 22 45668999999999999999999
Q ss_pred hhccC---ceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhc-------CCCCCHHHHHHHHHH
Q psy14499 152 ANNVT---AKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLS-------NLLWTEQEINLRLNN 221 (262)
Q Consensus 152 a~~~~---~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~-------~~~~~~~~v~~~l~~ 221 (262)
|..+. ||+|+||||+|+||||+++|+++|+.++||..+|+|||++|||||+||++ .+.|+.|.+.+.|..
T Consensus 351 A~~lvak~~~~IvEGAN~ptTpeA~~vlek~gv~i~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~ 430 (514)
T KOG2250|consen 351 AKALVAKGCKYIVEGANMPTTPEADEVLEKAGVLIIPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLAS 430 (514)
T ss_pred HHHHHhcCCcEEEecCCCCCChhHHHHHHhCCeEEechhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHH
Confidence 99995 55999999999999999999999999999999999999999999999999 578999999999988
Q ss_pred HHHHHHHHH----HHHHhhcC--------CCHHHHHHHHHHHHHHHHHHHcC
Q psy14499 222 IICNAFDAI----WELANTKK--------VSLRTAAFIIGCTRVLQAHKTRG 261 (262)
Q Consensus 222 ~~~~~~~~v----~~~a~~~~--------~~~r~aa~~~a~~rv~~a~~~rg 261 (262)
++....+.. ++.+.+++ .+++..|....+.|++++|..+|
T Consensus 431 v~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~gal~~~~~kva~ai~~~g 482 (514)
T KOG2250|consen 431 VQENLSRKQGKANLEPAAEFKDRIQGTSEKDLVHGALIATFNKVARAITDQG 482 (514)
T ss_pred HHHHHHHhccCcccchHHHhhhhhcCCCchHHhhhhHHHHHHHHHHHHHHHH
Confidence 776666665 54443322 35777777777777777776665
No 12
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=3.5e-51 Score=412.91 Aligned_cols=247 Identities=27% Similarity=0.345 Sum_probs=225.7
Q ss_pred CchhhhHhhhhcCCcC-CceEecccCCCCccCCCC-ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc--CCHHHHHHHHH
Q psy14499 1 MSWMMDTYSTKKNYTI-PGIVTGKPISIGGSFGRQ-KATGRGVFIIGSKIASKINLNIINSKISIQG--FGNVGSVAANL 76 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~-~~~~tGkp~~~GG~~~~~-~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqG--fG~VG~~~a~~ 76 (262)
|+|| |+|++.+|+.. ++++||||..+||+.++. ++||+||+.+++.+++++|+++++.||++|| ||+||++.+++
T Consensus 605 mdwa-~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~ll 683 (1002)
T PTZ00324 605 MDWA-ALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLL 683 (1002)
T ss_pred HHHH-HHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHH
Confidence 7899 99999999865 999999999999999886 9999999999999999999999999999999 99999999998
Q ss_pred HHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC---------------------CceecC----CCccc-
Q psy14499 77 FFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN---------------------EGEKIN----DSKEF- 130 (262)
Q Consensus 77 L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~---------------------~~~~~~----~~~~i- 130 (262)
+. .++|||+|.+|.+|||+|||.++|.++++.++++.+|+ +++.+. ..+++
T Consensus 684 s~---~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~ 760 (1002)
T PTZ00324 684 SK---EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFH 760 (1002)
T ss_pred hC---CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCCcccCchhhccCCCceeecccccccCCccceeccccccchhhc
Confidence 74 79999999999999999999999999999888888552 222221 02223
Q ss_pred --cccCceEEeeCCc-cCcccccch--------hccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHH
Q psy14499 131 --WSIPCDILIPAAI-EDQITINNA--------NNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYF 199 (262)
Q Consensus 131 --l~~~~DIlipaa~-~~~it~e~a--------~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~ 199 (262)
+..+|||||||+. ++.||++|+ .+++||+|+||||+|+||+|+.+|++|||.++||+++|+|||++||+
T Consensus 761 l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~S~~ 840 (1002)
T PTZ00324 761 LLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSSL 840 (1002)
T ss_pred cccCCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEeeHH
Confidence 4689999999998 999999999 77899999999999999999999999999999999999999999999
Q ss_pred HHHhhhc------------------CCCCC--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14499 200 EWVQNLS------------------NLLWT--EQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCT 251 (262)
Q Consensus 200 E~~~~~~------------------~~~~~--~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~ 251 (262)
||+|++. +.+|+ .++|.++|+++|...++.+++.+++.++++|++|..++.+
T Consensus 841 Evl~~l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~~L~~~a~~ef~~i~~~~~~~~~~~r~asd~lS~~ 912 (1002)
T PTZ00324 841 EVLAALALSDEEFAEHMCVKDATDAPEFYKKYVKEILDRIEENARLEFNAIWREELRTGKPRCLLADVLSRK 912 (1002)
T ss_pred HHHhccccchhhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 9999998 77899 8999999999999999999999999999999999998754
No 13
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=2.1e-44 Score=311.58 Aligned_cols=195 Identities=24% Similarity=0.375 Sum_probs=178.3
Q ss_pred CChhHHHHHHHHHHHHHHh--CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 34 QKATGRGVFIIGSKIASKI--NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~--g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
+.+|||||+++++++++++ +.+++|++|+|||||+||+.+++.|.+.|++|+ ++| .+.+++.++++.
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D----------~~~~~~~~~~~~ 70 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VAD----------INEEAVARAAEL 70 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEc----------CCHHHHHHHHHH
Confidence 5699999999999999997 779999999999999999999999999999999 888 567777777654
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCCC-HHHHHHHHHCCCeEecccccc
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTT-TEADDILRDKGIILAPDVITN 190 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t-~ea~~~l~~rgi~~iPD~~aN 190 (262)
. +.+.++ .++++..+|||++||+.+++||.+++++++|++|+|+||+|+| |+++++|+++||.|+||+++|
T Consensus 71 ~-------g~~~v~-~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~N 142 (200)
T cd01075 71 F-------GATVVA-PEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVN 142 (200)
T ss_pred c-------CCEEEc-chhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeee
Confidence 3 244555 6678878999999999999999999999999999999999999 999999999999999999999
Q ss_pred chhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14499 191 AGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVL 254 (262)
Q Consensus 191 ~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~ 254 (262)
+|||++||+||+|+. ++++.++++.+ .+.+.++++.|++++++||+|||.+|++||.
T Consensus 143 aGGv~~~~~e~~~~~------~~~~~~~~~~~-~~~~~~v~~~a~~~~~~~~~aA~~~a~~r~~ 199 (200)
T cd01075 143 AGGLINVADELYGGN------EARVLAKVEAI-YDTLLEIFAQAKQDGITTLEAADRMAEERIA 199 (200)
T ss_pred CcCceeehhHHhCCc------HHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 999999999999863 67899999998 6889999999999999999999999999985
No 14
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.96 E-value=9.2e-30 Score=197.94 Aligned_cols=100 Identities=52% Similarity=0.778 Sum_probs=96.0
Q ss_pred ceEEeeCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHH
Q psy14499 135 CDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQE 214 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~ 214 (262)
||||+|||.+++||++++++++||+|+||||+|+|++++++|++|||+|+|||++|+|||++||+||.|+.++ ++++
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~~e~ 79 (102)
T smart00839 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---TAEE 79 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---CHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy14499 215 INLRLNNIICNAFDAIWELANTK 237 (262)
Q Consensus 215 v~~~l~~~~~~~~~~v~~~a~~~ 237 (262)
+.+++.+.|.+++.++++.|+++
T Consensus 80 v~~~~~~~i~~~~~~v~~~a~~~ 102 (102)
T smart00839 80 VFTDLSEIMRNALEEIFETAQKY 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999763
No 15
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=99.66 E-value=4.7e-16 Score=160.37 Aligned_cols=187 Identities=21% Similarity=0.278 Sum_probs=145.1
Q ss_pred cCCceEecccCCCCccCCC----CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHH--HHHHHCCCEEEEEe
Q psy14499 15 TIPGIVTGKPISIGGSFGR----QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAA--NLFFKAGAKIVAIQ 88 (262)
Q Consensus 15 ~~~~~~tGkp~~~GG~~~~----~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a--~~L~~~g~~vv~V~ 88 (262)
.+.+|+-|+....|||.|. .+.|++|++++++..+|.+|++.....+-++|.|.+..-+- .+|...-.+.+|+.
T Consensus 913 ~~~~fwl~DAFaSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfgNgMLLS~~irLiAAf 992 (1592)
T COG2902 913 REYGFWLGDAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGNGMLLSKHIRLIAAF 992 (1592)
T ss_pred HHhCCChhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCccccccceeccccceeeEEe
Confidence 4567888898889998764 78999999999999999999999999999999765433322 35666677899999
Q ss_pred CCCceeeCC-CCCCHHHHHH---HHHhcCCccCCC------Cc------------------------eecCCCcc----c
Q psy14499 89 DDKTTIYNP-NGFNIPKLQK---YVTFTRSIKDFN------EG------------------------EKINDSKE----F 130 (262)
Q Consensus 89 D~~G~i~~~-~GlD~~~l~~---~~~~~g~~~~~~------~~------------------------~~~~~~~~----i 130 (262)
|.++..+|| .++|.+.+++ +.-.+.++.+|. ++ +.++ |.+ |
T Consensus 993 DhrhIFiDP~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~~~~~~-P~elitAI 1071 (1592)
T COG2902 993 DHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAALGIDKTELA-PNELITAI 1071 (1592)
T ss_pred cCCceeeCCCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHhCCCccccC-hHHHHHHH
Confidence 999999999 6788877666 333445566551 11 0111 222 2
Q ss_pred ccc--------CceEEeeCCc-cCcccccchh--------ccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchh
Q psy14499 131 WSI--------PCDILIPAAI-EDQITINNAN--------NVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGG 193 (262)
Q Consensus 131 l~~--------~~DIlipaa~-~~~it~e~a~--------~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GG 193 (262)
|.. ..|.+|+|+. +|.+++++|. +++||+|+||||..+|+.++-.+.++|..+..|++.|+||
T Consensus 1072 LKapvDLLw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~~~Ggr~ntDaidNsaG 1151 (1592)
T COG2902 1072 LKAPVDLLWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAG 1151 (1592)
T ss_pred HcCchhhhccCCCceeEecCCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHHHcCCeecchhhcccCC
Confidence 332 3677788987 4777776554 4589999999999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q psy14499 194 VIVSYFEWV 202 (262)
Q Consensus 194 vi~s~~E~~ 202 (262)
|.||.+|..
T Consensus 1152 Vd~SD~EVn 1160 (1592)
T COG2902 1152 VDCSDHEVN 1160 (1592)
T ss_pred Ccccchhhh
Confidence 999999964
No 16
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=99.56 E-value=3.3e-14 Score=151.31 Aligned_cols=193 Identities=21% Similarity=0.306 Sum_probs=152.6
Q ss_pred HhhhhcCC--cCCceEecccCCCCccCCC----CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHH--HHHH
Q psy14499 7 TYSTKKNY--TIPGIVTGKPISIGGSFGR----QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAA--NLFF 78 (262)
Q Consensus 7 ~y~~~~g~--~~~~~~tGkp~~~GG~~~~----~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a--~~L~ 78 (262)
+||.++.. .+.|||-|.....|||.|+ .+.|++|+|.+++..++.+|+++....|.|+|.|.++.-+. -+|.
T Consensus 841 tfSD~AN~ia~~~gfWLgDAFASGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGMLl 920 (1528)
T PF05088_consen 841 TFSDIANEIAAEYGFWLGDAFASGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGMLL 920 (1528)
T ss_pred hHHHHHHHHHHHcCCCcchhhhcCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccchhc
Confidence 45555543 4688999999999999875 68999999999999999999999999999999988876665 4577
Q ss_pred HCCCEEEEEeCCCceeeCCCCCCHHHHH----HHHHh-cCCccCCC------C-------c-----------------ee
Q psy14499 79 KAGAKIVAIQDDKTTIYNPNGFNIPKLQ----KYVTF-TRSIKDFN------E-------G-----------------EK 123 (262)
Q Consensus 79 ~~g~~vv~V~D~~G~i~~~~GlD~~~l~----~~~~~-~g~~~~~~------~-------~-----------------~~ 123 (262)
....++||..|+...-.||+- |+..-. ++++. +-+..+|. | + ..
T Consensus 921 S~~irLvaAF~H~hIFiDP~P-D~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~r~~lgi~~~~ 999 (1528)
T PF05088_consen 921 SRHIRLVAAFNHRHIFIDPDP-DPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEMRAALGIEKDS 999 (1528)
T ss_pred ccceeEEEecCcceeecCcCC-ChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCCCCHHHHHHhCCCCCc
Confidence 788999999999999999984 665321 22221 22444551 1 0 11
Q ss_pred cCCCcc----ccccCceEEeeCCccCcccc---c--------------chhccCceEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 124 INDSKE----FWSIPCDILIPAAIEDQITI---N--------------NANNVTAKIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 124 ~~~~~~----il~~~~DIlipaa~~~~it~---e--------------~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
++ |++ +|.+++|.|+--.++..+-. . |+..++||+|+||+|..+|+.++-.+..+|..
T Consensus 1000 ~t-p~eLi~aiL~apVDLlwnGGIGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNLG~TQ~gRiE~a~~GGr 1078 (1528)
T PF05088_consen 1000 LT-PDELIRAILKAPVDLLWNGGIGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNLGLTQRGRIEYALNGGR 1078 (1528)
T ss_pred cC-HHHHHHHHhcCccceEecCCccceEecCCCcccccccccCcceeechHHceEEEEecccccccchHHHHHHHHcCCc
Confidence 22 444 46799999999888755532 1 46667999999999999999999999999999
Q ss_pred EeccccccchhhHHHHHHH
Q psy14499 183 LAPDVITNAGGVIVSYFEW 201 (262)
Q Consensus 183 ~iPD~~aN~GGvi~s~~E~ 201 (262)
+-.|++-||+||-||-+|.
T Consensus 1079 iNtDaiDNSaGVd~SDhEV 1097 (1528)
T PF05088_consen 1079 INTDAIDNSAGVDCSDHEV 1097 (1528)
T ss_pred cchhhhcccCCCcCccchh
Confidence 9999999999999999994
No 17
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.51 E-value=5.9e-14 Score=129.91 Aligned_cols=173 Identities=19% Similarity=0.260 Sum_probs=118.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHH--------CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFK--------AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~--------~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
++|+|+|||+||+.++++|.+ .++++|+|+|++|++++|+|||++++++++++ +.+..++- +.++ .+++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~-~~~~-~~~l 77 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDY-EKIK-FDEI 77 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCC-CcCC-HHHH
Confidence 389999999999999999987 46899999999999999999999999988866 66655421 1122 4566
Q ss_pred cccCceEEeeCCccCcccccchhcc------CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchhhH--HHHH
Q psy14499 131 WSIPCDILIPAAIEDQITINNANNV------TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGVI--VSYF 199 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it~e~a~~~------~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GGvi--~s~~ 199 (262)
+..++||+|+|+.++ .+++++..+ +.+.|+-+..+|+. ++..+..+++|+.+. |-++.||-+ ....
T Consensus 78 l~~~~DVvVE~t~~~-~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~--~eatV~~g~Pii~~~ 154 (326)
T PRK06392 78 FEIKPDVIVDVTPAS-KDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR--YEATVAGGVPLFSLR 154 (326)
T ss_pred hcCCCCEEEECCCCC-CcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE--Eeeeeeeccchhhhh
Confidence 677999999999864 455555442 55788888778864 555666677888887 556555432 2222
Q ss_pred HHH-hhh-----cC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 200 EWV-QNL-----SN-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 200 E~~-~~~-----~~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
... ... .+ +.-+-.-++.++++ ...+.+++..|++.|.
T Consensus 155 ~~~~~g~~i~~i~GilnGT~nyIl~~m~~--g~~f~~al~eAq~lG~ 199 (326)
T PRK06392 155 DYSTLPSRIKNFRGIVSSTINYVIRQEAN--GRGFLDVVKIAQKMGI 199 (326)
T ss_pred hhhcccCCEEEEEEEEeChHHHHHhhccC--CCCHHHHHHHHHHcCC
Confidence 211 000 00 00112234555552 4568888899988875
No 18
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.48 E-value=7.8e-14 Score=129.67 Aligned_cols=172 Identities=21% Similarity=0.284 Sum_probs=118.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHH--------CC--CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC---ceec
Q psy14499 58 NSKISIQGFGNVGSVAANLFFK--------AG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE---GEKI 124 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~--------~g--~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~---~~~~ 124 (262)
..+|+|||||+||++++++|.+ .| .+|++|+|++|++|||+|+|++++++++++++.+..|+. ...+
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4799999999999999999987 45 899999999999999999999999999999888877752 1223
Q ss_pred CCCcccc-ccCceEEeeCCccCcccccchhcc------CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchh-
Q psy14499 125 NDSKEFW-SIPCDILIPAAIEDQITINNANNV------TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGG- 193 (262)
Q Consensus 125 ~~~~~il-~~~~DIlipaa~~~~it~e~a~~~------~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GG- 193 (262)
+ .++++ +.++||+|+|+.. +++..+ +.+.||-+..+|++ ++..+.-+++|+.+. |-+|.+|
T Consensus 82 ~-~~ell~~~~~DVvVd~t~~-----~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~--~ea~v~~G 153 (336)
T PRK08374 82 S-PEEIVEEIDADIVVDVTND-----KNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYL--FEATVMAG 153 (336)
T ss_pred C-HHHHHhcCCCCEEEECCCc-----HHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEE--Eecccccc
Confidence 3 56676 5799999999843 344444 45677766666653 455566677898887 5565553
Q ss_pred h--HHHHHHHHhhh-----cC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 194 V--IVSYFEWVQNL-----SN-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 194 v--i~s~~E~~~~~-----~~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
+ +..-.+.+... .+ +.-+-.-++.++++ ...+.+++..|++.|.
T Consensus 154 iPii~~l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~--g~~f~eal~eAq~~Gy 205 (336)
T PRK08374 154 TPIIGLLRENLLGDTVKRIEAVVNATTTFILTRMEQ--GKTFEEALKEAQTLGI 205 (336)
T ss_pred CCchHHHHhhccccceEEEEEEEechHHHHHHHhhC--CCCHHHHHHHHHHcCC
Confidence 2 22222221100 00 01122335666653 4668899999998875
No 19
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.35 E-value=1.1e-11 Score=115.59 Aligned_cols=179 Identities=23% Similarity=0.285 Sum_probs=120.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDS 127 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~----------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~ 127 (262)
..+|+|+|||+||+.+++.|.+. ++++++|+|+++.+|+|+|+|++++.+..++.+.+..|++.....+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 46899999999999999999764 68999999999999999999999999888877766666533221225
Q ss_pred cccc-ccCceEEeeCCccCcccccchhcc------CceEEEecCCCCC---CHHHHHHHHHCCCeEeccccccchhh---
Q psy14499 128 KEFW-SIPCDILIPAAIEDQITINNANNV------TAKIILEGANGPT---TTEADDILRDKGIILAPDVITNAGGV--- 194 (262)
Q Consensus 128 ~~il-~~~~DIlipaa~~~~it~e~a~~~------~~kiIve~AN~p~---t~ea~~~l~~rgi~~iPD~~aN~GGv--- 194 (262)
++++ +.++||+++|++++.-+.+++..+ +.+.|+-+...|+ .++..+..+++|+.+. |-++.|+-
T Consensus 82 ~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~--~ea~v~~glPi 159 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR--YEATVGGAMPI 159 (341)
T ss_pred HHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE--EeeeeeechhH
Confidence 5666 468999999999877665555443 4566776666675 3555666678899886 44444432
Q ss_pred HHHHHHHHhhhc-----C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 195 IVSYFEWVQNLS-----N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 195 i~s~~E~~~~~~-----~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
+....+.+.... + +.-+-.-++.++++. ...+.+++..|++.|.
T Consensus 160 i~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~G~ 209 (341)
T PRK06270 160 INLAKETLAGNDIKSIKGILNGTTNYILTRMEEE-GLSYEQALAEAQELGY 209 (341)
T ss_pred HHHHHhhcccCceEEEEEEEeCcHHHHHHHHhhc-CCCHHHHHHHHHHcCC
Confidence 222222221100 0 001222355555332 3568899999998875
No 20
>PRK06813 homoserine dehydrogenase; Validated
Probab=99.07 E-value=3.9e-10 Score=105.21 Aligned_cols=174 Identities=16% Similarity=0.212 Sum_probs=115.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK 128 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~----------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~ 128 (262)
.+|+|.|||+||+.++++|.+. ..+|++|+|+++.+++++|+|++.+++.......+..|.. .+.+
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~----~~~~ 78 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIE----HHPE 78 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhc----cChH
Confidence 6899999999999999998763 3789999999999999999999876554322111111110 0122
Q ss_pred ccc--ccCceEEeeCCccCcccccchhcc------CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchhhH--
Q psy14499 129 EFW--SIPCDILIPAAIEDQITINNANNV------TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGVI-- 195 (262)
Q Consensus 129 ~il--~~~~DIlipaa~~~~it~e~a~~~------~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GGvi-- 195 (262)
+++ ..+.||+|+|+.++..+.+++..+ +.+.||.+...+++ +|..+.-+++|+.+. |-++.||-+
T Consensus 79 ~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~--yEasVggGiPi 156 (346)
T PRK06813 79 ERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR--YSGATAAALPT 156 (346)
T ss_pred HHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE--Eeeeeeeccch
Confidence 333 347899999999988888888776 56789998888873 666677788999998 667666432
Q ss_pred HHHHHHHhhhc------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 196 VSYFEWVQNLS------N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 196 ~s~~E~~~~~~------~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
...+.....-. + +.-+-.-++.++++. ...+.+++..|++.|.
T Consensus 157 I~~l~~~~~g~~I~~i~GIlNGT~NyIL~~m~~~-g~~f~eal~~Aq~lGy 206 (346)
T PRK06813 157 LDIGQFSLAGCHIEKIEGILNGTTNYILTKMNEE-DITFEEALKEAQSKGI 206 (346)
T ss_pred HHHHhhhcccCcEEEEEEEEechHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence 22222111000 0 001122244444322 3458888889988875
No 21
>PLN02700 homoserine dehydrogenase family protein
Probab=98.88 E-value=5.8e-09 Score=98.20 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=112.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHC-------C--CEEEEEeCCCceeeCCC----CCCHHHHHHH---HHhcCCccCCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKA-------G--AKIVAIQDDKTTIYNPN----GFNIPKLQKY---VTFTRSIKDFN 119 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~-------g--~~vv~V~D~~G~i~~~~----GlD~~~l~~~---~~~~g~~~~~~ 119 (262)
|+..+|+|+|||+||+.+++.|.+. | .+|++|+|+++.+++++ |+|++.+.+. +++...+..|+
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~ 80 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALG 80 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhh
Confidence 3457899999999999999987652 3 68999999999999965 9998887663 33333343331
Q ss_pred C---c-----------eecCCCcccc-ccCceEEeeCCccCcccccchhcc--CceEEEecCCCCCC--HHHHHHHHHCC
Q psy14499 120 E---G-----------EKINDSKEFW-SIPCDILIPAAIEDQITINNANNV--TAKIILEGANGPTT--TEADDILRDKG 180 (262)
Q Consensus 120 ~---~-----------~~~~~~~~il-~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t--~ea~~~l~~rg 180 (262)
. . +.++ ..+.+ ..+.+|+|+|+.+. .+.+...+. +.+.||.+...+++ .+--+.|+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ViVD~T~s~-~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~~~ 158 (377)
T PLN02700 81 ALAGGCQVFNNSELSRKVID-IATLLGKSTGLVVVDCSASM-ETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAHP 158 (377)
T ss_pred hccccccccccccccchhhh-HHHHhhccCCCEEEECCCCh-HHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHHcC
Confidence 1 0 0011 12223 45679999999863 223333332 67789988888874 33346667789
Q ss_pred CeEeccccccchhh---HHHHHHHHhh---hc---C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 181 IILAPDVITNAGGV---IVSYFEWVQN---LS---N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 181 i~~iPD~~aN~GGv---i~s~~E~~~~---~~---~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
+.+. |-++.||- |..-.+.+.. .. + +.-+-.-++.++++ ...+.+++..|++.|.
T Consensus 159 ~~~~--yEatVgaGlPiI~tl~~ll~sGd~I~~I~GIlnGT~nyIl~~m~~--g~~fseal~eAq~~Gy 223 (377)
T PLN02700 159 RRIR--HESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSELED--GKPFSEVVKQAKSLGY 223 (377)
T ss_pred CeEE--EEeeeeeccchHHHHHHHhhccCCEEEEEEEEeChHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence 8887 66776743 3323233220 00 0 01122335666653 4568888999988886
No 22
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.84 E-value=4.3e-08 Score=73.45 Aligned_cols=84 Identities=24% Similarity=0.319 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
+||+|++..++...+..+.++++++++|+|+|.+|+.+++.|.+.+.+.+.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------
Confidence 4899999999999988888999999999999999999999999986555557774
Q ss_pred cCCCCceecCCCccccccCceEEeeCCccCccccc--chhccCceEEEecC
Q psy14499 116 KDFNEGEKINDSKEFWSIPCDILIPAAIEDQITIN--NANNVTAKIILEGA 164 (262)
Q Consensus 116 ~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e--~a~~~~~kiIve~A 164 (262)
||+|+|+....+..+ +....++.+|++.|
T Consensus 56 --------------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 --------------------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred --------------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence 999999876555544 44445677777654
No 23
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.82 E-value=2.4e-08 Score=92.34 Aligned_cols=169 Identities=16% Similarity=0.179 Sum_probs=115.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 126 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~----------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 126 (262)
+..+|.|.|||+||++++++|.++ ..++++|+|+++..+. ++|...+ ..+...+... .+
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~-~~~~~~~~~~-------~~- 70 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNA-EVWTTDGALS-------LG- 70 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--cccccch-hhheeccccc-------cc-
Confidence 567999999999999999999884 4799999999998875 3454444 3333222211 11
Q ss_pred CccccccCceEEeeCCccCcccccchhcc-----CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchhhH---
Q psy14499 127 SKEFWSIPCDILIPAAIEDQITINNANNV-----TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGVI--- 195 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GGvi--- 195 (262)
.+.+...+.||++|+.+.+.-+.+++..+ +.|+||-+...|++ .|..+.-+++|+.+. |-++.||=+
T Consensus 71 ~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~--yEAtV~gGiPiI 148 (333)
T COG0460 71 DEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLL--YEATVGGGIPII 148 (333)
T ss_pred HhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEE--EEeeeccCcchH
Confidence 23455689999999999988888764443 67899999888885 566777788898887 777777653
Q ss_pred HHHHHHHhhhc-----C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 196 VSYFEWVQNLS-----N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 196 ~s~~E~~~~~~-----~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
..--|.+.... + +.-+-.-++.++++-. ..++++++.|++.|.
T Consensus 149 ~~lr~~l~g~~I~~i~GIlNGT~NyIlt~m~~~~-~~f~dal~eAq~lGy 197 (333)
T COG0460 149 KLLRELLAGDEILSIRGILNGTTNYILTRMEEGG-LSFEDALAEAQELGY 197 (333)
T ss_pred HHHHhhcccCceEEEEEEEeccHHHHHHHHHccC-CCHHHHHHHHHHcCC
Confidence 22222221000 0 0113345667777662 369999999999876
No 24
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.81 E-value=4.1e-08 Score=82.19 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=65.8
Q ss_pred HHHHHHHHHH-HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 39 RGVFIIGSKI-ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 39 ~Gv~~~~~~~-~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
||+-+++-.. ++..+..+.|++++|.|||.||+++|+.|+.+|++|+ |+| .||-+.++....
T Consensus 3 yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~-V~e----------~DPi~alqA~~d------ 65 (162)
T PF00670_consen 3 YGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVT-VTE----------IDPIRALQAAMD------ 65 (162)
T ss_dssp HHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEE-EE-----------SSHHHHHHHHHT------
T ss_pred cccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEE-EEE----------CChHHHHHhhhc------
Confidence 4444444333 3445788999999999999999999999999999988 999 899877766543
Q ss_pred CCCceecCCCccccccCceEEeeCCcc-CcccccchhccCceEEE
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAKIIL 161 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~kiIv 161 (262)
+.+..+ .++.+ ..+||||-|+.. ++++.+...+++-..|+
T Consensus 66 --Gf~v~~-~~~a~-~~adi~vtaTG~~~vi~~e~~~~mkdgail 106 (162)
T PF00670_consen 66 --GFEVMT-LEEAL-RDADIFVTATGNKDVITGEHFRQMKDGAIL 106 (162)
T ss_dssp --T-EEE--HHHHT-TT-SEEEE-SSSSSSB-HHHHHHS-TTEEE
T ss_pred --CcEecC-HHHHH-hhCCEEEECCCCccccCHHHHHHhcCCeEE
Confidence 223333 34555 489999998874 78899999999655444
No 25
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.68 E-value=7.5e-08 Score=99.21 Aligned_cols=176 Identities=13% Similarity=0.173 Sum_probs=112.2
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHC---------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceec
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKA---------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKI 124 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~---------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~ 124 (262)
.+.+..+|+|.|||+||++++++|.+. ..+|++|+|+++.+++|+|+|++.+.+...... ..+ +...+
T Consensus 461 ~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~ 537 (819)
T PRK09436 461 LSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAG--EPF-DLDRL 537 (819)
T ss_pred cccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhcc--CCC-CHHHH
Confidence 345889999999999999999998753 468999999999999999999987665544321 111 11100
Q ss_pred CCCcccc---ccCceEEeeCCccCcccccchhcc-CceEEEecCCCCCC------HHHHHHHHHCCCeEeccccccchhh
Q psy14499 125 NDSKEFW---SIPCDILIPAAIEDQITINNANNV-TAKIILEGANGPTT------TEADDILRDKGIILAPDVITNAGGV 194 (262)
Q Consensus 125 ~~~~~il---~~~~DIlipaa~~~~it~e~a~~~-~~kiIve~AN~p~t------~ea~~~l~~rgi~~iPD~~aN~GGv 194 (262)
.+++ ..+.||+|+|+.+..+......-+ +.+.||.+...+++ +|..+..+++|+.+. |-++.||-
T Consensus 538 ---~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~--yeatV~~g 612 (819)
T PRK09436 538 ---IRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFL--YETNVGAG 612 (819)
T ss_pred ---HHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEE--Eeeeeccc
Confidence 1122 246799999998765444333333 56789988888875 455566678999997 66766643
Q ss_pred ---HHHHHHHHh-h--hc---CC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 195 ---IVSYFEWVQ-N--LS---NL-LWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 195 ---i~s~~E~~~-~--~~---~~-~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
+....+.++ . .. +. .-+-.-++.++++ ...+.+++..|++.|.
T Consensus 613 iPii~~l~~~~~~g~~i~~i~GilnGT~nyIl~~~~~--g~~f~~al~~Aq~~Gy 665 (819)
T PRK09436 613 LPVIETLQNLLNAGDELLKFEGILSGSLSFIFGKLDE--GMSFSEATRLAKEKGY 665 (819)
T ss_pred cchHHHHHHHHhccCcEEEEEEEEeChHHHHhhhhhc--CCCHHHHHHHHHHcCC
Confidence 333333331 0 00 10 0112224444443 3457788888888775
No 26
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=98.68 E-value=2.6e-07 Score=87.26 Aligned_cols=126 Identities=22% Similarity=0.193 Sum_probs=98.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE--EEEEeCCCceeeCCC-C--CCHHHH
Q psy14499 31 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK--IVAIQDDKTTIYNPN-G--FNIPKL 105 (262)
Q Consensus 31 ~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~--vv~V~D~~G~i~~~~-G--lD~~~l 105 (262)
+|-...||--+..++.++++..|++|++.+|++.|.|..|-+++++|...|.+ -+-++|++|.+|+.. - ++..+.
T Consensus 172 hDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~ 251 (432)
T COG0281 172 HDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKY 251 (432)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHH
Confidence 46788999999999999999999999999999999999999999999999985 444999999999753 2 333332
Q ss_pred HHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCC
Q psy14499 106 QKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGP 167 (262)
Q Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p 167 (262)
....+..+.. . .++ .-.++|||+-||..+.+|+|.++++. -.+|+.-||--
T Consensus 252 ~~a~~~~~~~--------~--~~~-~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaNP~ 303 (432)
T COG0281 252 AKAIEDTGER--------T--LDL-ALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALANPT 303 (432)
T ss_pred HHHHhhhccc--------c--ccc-cccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCCCC
Confidence 2222222110 0 012 33699999999999999999999994 45999999964
No 27
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=98.63 E-value=2.3e-07 Score=82.92 Aligned_cols=126 Identities=16% Similarity=0.057 Sum_probs=95.7
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE----------EEEEeCCCceeeCCC-CCCHH
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK----------IVAIQDDKTTIYNPN-GFNIP 103 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~----------vv~V~D~~G~i~~~~-GlD~~ 103 (262)
+.||--+..++.+++|..|+++++.||++.|.|..|.+++++|.+.+.+ -+-++|++|.+++.. .++..
T Consensus 2 qGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~ 81 (254)
T cd00762 2 QGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPN 81 (254)
T ss_pred chhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHH
Confidence 4689999999999999999999999999999999999999999886543 344999999999865 35553
Q ss_pred HHHHH-HHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhccC----ceEEEecCCCCC
Q psy14499 104 KLQKY-VTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANGPT 168 (262)
Q Consensus 104 ~l~~~-~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~~----~kiIve~AN~p~ 168 (262)
+..-. +.+. ... ..+..+++ .+++||||-++. ++.+|+|.++.+. -.||+.-+|-..
T Consensus 82 ~~~~~~~~~~-------~~~-~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~ 145 (254)
T cd00762 82 EYHLARFANP-------ERE-SGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTS 145 (254)
T ss_pred HHHHHHHcCc-------ccc-cCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCC
Confidence 32100 1110 001 11134444 469999999998 8999999999983 459999999754
No 28
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=98.60 E-value=5.3e-07 Score=81.72 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=95.3
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC----CC------EEEEEeCCCceeeCCCC-CCHH
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA----GA------KIVAIQDDKTTIYNPNG-FNIP 103 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~----g~------~vv~V~D~~G~i~~~~G-lD~~ 103 (262)
+.||--+..++.+++|..|+++++.||++.|.|..|.+++++|... |. +-+-++|++|.+++... ++..
T Consensus 2 qGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~ 81 (279)
T cd05312 2 QGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPF 81 (279)
T ss_pred chHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHH
Confidence 4699999999999999999999999999999999999999999886 87 34459999999998653 4332
Q ss_pred HHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhccC----ceEEEecCCCCC
Q psy14499 104 KLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANGPT 168 (262)
Q Consensus 104 ~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~~----~kiIve~AN~p~ 168 (262)
+ ..+.+.... . . ..+..+++ .+++||||-++. ++.+|++.++.+. -.||+.-+|--.
T Consensus 82 ~-~~~a~~~~~-~---~---~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~ 144 (279)
T cd05312 82 K-KPFARKDEE-K---E---GKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTS 144 (279)
T ss_pred H-HHHHhhcCc-c---c---CCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 2 122222110 0 0 11134444 469999999995 7999999999983 559999999743
No 29
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.56 E-value=3.4e-07 Score=94.13 Aligned_cols=174 Identities=13% Similarity=0.174 Sum_probs=108.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceec
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKI 124 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~----------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~ 124 (262)
+.+..+|+|.|||+||++++++|.+. ..+|++|+|+++.+++++|+|...+.+..+.... .+ +...
T Consensus 455 ~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~--~~-~~~~- 530 (810)
T PRK09466 455 AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAV--EW-DEES- 530 (810)
T ss_pred cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcC--Cc-cHHH-
Confidence 45778999999999999999998762 3789999999999999999998877665543221 11 1110
Q ss_pred CCCcccc---ccCceEEeeCCccCcccccchhcc-CceEEEecCCCCCC------HHHHHHHHHCCCeEeccccccchhh
Q psy14499 125 NDSKEFW---SIPCDILIPAAIEDQITINNANNV-TAKIILEGANGPTT------TEADDILRDKGIILAPDVITNAGGV 194 (262)
Q Consensus 125 ~~~~~il---~~~~DIlipaa~~~~it~e~a~~~-~~kiIve~AN~p~t------~ea~~~l~~rgi~~iPD~~aN~GGv 194 (262)
.-+++ ..+.+|+|+|+.+.........-+ +.+.||-+...+.+ ++..+..+++|+.+. |-++.||-
T Consensus 531 --~~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~--yEasV~~g 606 (810)
T PRK09466 531 --LFLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWL--YNATVGAG 606 (810)
T ss_pred --HHHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEE--Eeceeeec
Confidence 11122 223469999998654433333333 56788888776542 344555678999998 77777754
Q ss_pred HHHHHHHHhhhc--C--------C-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 195 IVSYFEWVQNLS--N--------L-LWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 195 i~s~~E~~~~~~--~--------~-~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
+=. ..-++++. + . .-+-.-+...+++ ...+.+++..|++.|.
T Consensus 607 iPi-i~~l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~--g~~f~eal~~Aq~~Gy 659 (810)
T PRK09466 607 LPI-NHTVRDLRNSGDSILAISGIFSGTLSWLFLQFDG--SVPFSELVDQAWQQGL 659 (810)
T ss_pred cCh-HHHHHHHHhccCcEEEEEEEEccHHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence 311 11122211 1 0 0011114444443 3568888888888775
No 30
>PRK12861 malic enzyme; Reviewed
Probab=98.49 E-value=1.3e-06 Score=88.74 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=101.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCC--CCCHHHH
Q psy14499 31 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPN--GFNIPKL 105 (262)
Q Consensus 31 ~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~--GlD~~~l 105 (262)
+|-.+.||--+..++.++++..|+++++.||++.|.|..|.+++++|.+.|. +++ ++|++|.|+... .++..+.
T Consensus 162 ~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~-~~D~~Gli~~~r~~~l~~~k~ 240 (764)
T PRK12861 162 HDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIW-VTDIEGVVYRGRTTLMDPDKE 240 (764)
T ss_pred ccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEE-EEcCCCeeeCCCcccCCHHHH
Confidence 3677899999999999999999999999999999999999999999999998 565 999999999854 3655432
Q ss_pred HHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCC--CCHH
Q psy14499 106 QKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGP--TTTE 171 (262)
Q Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p--~t~e 171 (262)
.+.+.. .. -+ ..+.+. .+||||-++.++.+|+|.++++. -.||+.-+|-. ++||
T Consensus 241 -~~a~~~-~~--------~~-L~eai~-~advliG~S~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe 297 (764)
T PRK12861 241 -RFAQET-DA--------RT-LAEVIG-GADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPE 297 (764)
T ss_pred -HHHhhc-CC--------CC-HHHHHh-cCCEEEEcCCCCCCCHHHHHHhccCCEEEECCCCCccCCHH
Confidence 122211 10 11 345553 47999999999999999999994 44999999965 2555
No 31
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.48 E-value=6.4e-06 Score=67.26 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCce
Q psy14499 43 IIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE 122 (262)
Q Consensus 43 ~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~ 122 (262)
.++.+++++.+.+++++++.|+|.|.+|+.+++.|.+.|...+.+.| .+.+++.+..++.+.-. . . .
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~----------r~~~~~~~~~~~~~~~~-~-~-~ 70 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVN----------RTLEKAKALAERFGELG-I-A-I 70 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEc----------CCHHHHHHHHHHHhhcc-c-c-e
Confidence 45566777778888999999999999999999999998744344777 35555555444322100 0 0 0
Q ss_pred ecCCCccccccCceEEeeCCccCcccccch----hcc-CceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 123 KINDSKEFWSIPCDILIPAAIEDQITINNA----NNV-TAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 123 ~~~~~~~il~~~~DIlipaa~~~~it~e~a----~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
...+..+.+ .++|++|-|++....+.+.. ..+ ..++|++.+-.|...+..+.++++|+.++|-
T Consensus 71 ~~~~~~~~~-~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g 138 (155)
T cd01065 71 AYLDLEELL-AEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDG 138 (155)
T ss_pred eecchhhcc-ccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCC
Confidence 111123333 58999999998776411111 112 4567888776665337778889999988753
No 32
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=98.48 E-value=1.4e-06 Score=88.51 Aligned_cols=128 Identities=21% Similarity=0.216 Sum_probs=101.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCC--CCCHHHH
Q psy14499 31 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPN--GFNIPKL 105 (262)
Q Consensus 31 ~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~--GlD~~~l 105 (262)
+|-.+.||--+..++.+++|..|+++++.||++.|.|..|.+++++|...|. +++ ++|++|.++... +++..+.
T Consensus 158 ~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~~~~~k~ 236 (752)
T PRK07232 158 HDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENII-VCDSKGVIYKGRTEGMDEWKA 236 (752)
T ss_pred ccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEE-EEcCCCeecCCCcccccHHHH
Confidence 3677899999999999999999999999999999999999999999999998 454 999999999864 4554432
Q ss_pred HHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCC--CCHH
Q psy14499 106 QKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGP--TTTE 171 (262)
Q Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p--~t~e 171 (262)
...+.. +. .+..+.+. .+||||-++.++.+|++.++++. -.||+.-+|-. ++||
T Consensus 237 --~~a~~~------~~---~~l~~~i~-~~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~ 293 (752)
T PRK07232 237 --AYAVDT------DA---RTLAEAIE-GADVFLGLSAAGVLTPEMVKSMADNPIIFALANPDPEITPE 293 (752)
T ss_pred --HHhccC------CC---CCHHHHHc-CCCEEEEcCCCCCCCHHHHHHhccCCEEEecCCCCccCCHH
Confidence 111111 11 11445554 48999999999999999999994 45999999964 2555
No 33
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.48 E-value=2.9e-06 Score=74.87 Aligned_cols=138 Identities=20% Similarity=0.214 Sum_probs=95.6
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE--EEEEeCCCceeeCCCC--CCHHHHHHHHH
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK--IVAIQDDKTTIYNPNG--FNIPKLQKYVT 110 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~--vv~V~D~~G~i~~~~G--lD~~~l~~~~~ 110 (262)
+.|+--+..++..+++..|.++++.||+|.|.|.+|+++++.|.+.|++ -+.++|++|-++.... |+.. ..++.+
T Consensus 2 qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~-~~~la~ 80 (226)
T cd05311 2 HGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPD-KNEIAK 80 (226)
T ss_pred CchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHH-HHHHHH
Confidence 4688888899999999889999999999999999999999999999987 5669999998765532 3222 122222
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhcc-CceEEEecCCCCC-CHHHHHHHHHCCCe
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV-TAKIILEGANGPT-TTEADDILRDKGII 182 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~ 182 (262)
.... . ... .+ ..+.+ .++||+|-|+..+.++++..+.+ +..+|+.-. +|. |+-.++. ++.|..
T Consensus 81 ~~~~-~---~~~-~~-l~~~l-~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e~~~~~A-~~~ga~ 145 (226)
T cd05311 81 ETNP-E---KTG-GT-LKEAL-KGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPEIWPEEA-KEAGAD 145 (226)
T ss_pred Hhcc-C---ccc-CC-HHHHH-hcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCcCCHHHH-HHcCCc
Confidence 2110 0 000 11 22333 36999999999999998888877 344888877 554 3333333 345663
No 34
>PRK12862 malic enzyme; Reviewed
Probab=98.41 E-value=2.4e-06 Score=87.30 Aligned_cols=128 Identities=17% Similarity=0.157 Sum_probs=101.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCC--CCCHHHH
Q psy14499 31 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPN--GFNIPKL 105 (262)
Q Consensus 31 ~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~--GlD~~~l 105 (262)
+|-.+.||--+..++.+++|..|+++++.||++.|.|..|.+++++|...|. +++ ++|++|.++... +++..+.
T Consensus 166 ~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~l~~~~~ 244 (763)
T PRK12862 166 HDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIW-VTDIKGVVYEGRTELMDPWKA 244 (763)
T ss_pred ecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEE-EEcCCCeeeCCCCccccHHHH
Confidence 3667899999999999999999999999999999999999999999999998 454 999999999864 3655442
Q ss_pred HHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCC--CCHH
Q psy14499 106 QKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGP--TTTE 171 (262)
Q Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p--~t~e 171 (262)
. +.+.+ .. .+..+.+. .+||||-++.++.+|+|.++++. -.||+.-+|-. ++||
T Consensus 245 ~-~a~~~-~~---------~~l~e~~~-~~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~ 301 (763)
T PRK12862 245 R-YAQKT-DA---------RTLAEVIE-GADVFLGLSAAGVLKPEMVKKMAPRPLIFALANPTPEILPE 301 (763)
T ss_pred H-Hhhhc-cc---------CCHHHHHc-CCCEEEEcCCCCCCCHHHHHHhccCCEEEeCCCCcccCCHH
Confidence 1 22211 11 11445564 48999999999999999999994 44999999965 2555
No 35
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=98.40 E-value=1.2e-06 Score=78.38 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=88.8
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC----CC------EEEEEeCCCceeeCCCCCCHHH
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA----GA------KIVAIQDDKTTIYNPNGFNIPK 104 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~----g~------~vv~V~D~~G~i~~~~GlD~~~ 104 (262)
+.||--+..++.+++|..|++|++.||++.|.|..|.+++++|.+. |. +-+-++|++|.+++.. -|+..
T Consensus 2 qGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~ 80 (255)
T PF03949_consen 2 QGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNP 80 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSH
T ss_pred chhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCCh
Confidence 4689999999999999999999999999999999999999999886 87 4455999999999865 33322
Q ss_pred HHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCC-ccCcccccchhccC----ceEEEecCCCC
Q psy14499 105 LQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAA-IEDQITINNANNVT----AKIILEGANGP 167 (262)
Q Consensus 105 l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa-~~~~it~e~a~~~~----~kiIve~AN~p 167 (262)
-.+...+... +.....+ ..+.+ ..+.||||-++ .++.+|+|.++.+. -.||+.-+|-.
T Consensus 81 ~~~~~a~~~~----~~~~~~~-L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt 144 (255)
T PF03949_consen 81 HKKPFARKTN----PEKDWGS-LLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPT 144 (255)
T ss_dssp HHHHHHBSSS----TTT--SS-HHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSC
T ss_pred hhhhhhccCc----ccccccC-HHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCC
Confidence 2222222110 0000111 33433 56889999999 78999999999993 45999999964
No 36
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.40 E-value=3.9e-06 Score=76.59 Aligned_cols=127 Identities=20% Similarity=0.278 Sum_probs=88.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
+...|+.+++. .+++..+.++.+++|+|+|+|.+|+.+++.|..+|++|+ ++|+ +.+++.+..+.
T Consensus 129 n~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R----------~~~~~~~~~~~- 193 (287)
T TIGR02853 129 NSIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGAR----------SSADLARITEM- 193 (287)
T ss_pred ccHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeC----------CHHHHHHHHHC-
Confidence 34456666543 445556779999999999999999999999999999877 7663 33343333221
Q ss_pred CCccCCCCceec--CCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCCC-CHHHHHHHHHCCCeEe
Q psy14499 113 RSIKDFNEGEKI--NDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGPT-TTEADDILRDKGIILA 184 (262)
Q Consensus 113 g~~~~~~~~~~~--~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p~-t~ea~~~l~~rgi~~i 184 (262)
+ ...+ ++..+.+ .++|+++.|.+..+++.+....++ ..+|++-+..|- |+- +..+++|+..+
T Consensus 194 g-------~~~~~~~~l~~~l-~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~ 259 (287)
T TIGR02853 194 G-------LIPFPLNKLEEKV-AEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL 259 (287)
T ss_pred C-------CeeecHHHHHHHh-ccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence 1 1111 1122333 489999999988888887777774 558999999886 433 55688998775
No 37
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.36 E-value=5.9e-06 Score=75.70 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=85.8
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
+...|+.| ++..+++..+.++.+++|.|+|+|.+|+.+++.|..+|++|+ ++|+ ++++..... ..
T Consensus 130 ns~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r----------~~~~~~~~~-~~ 194 (296)
T PRK08306 130 NSIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGAR----------KSAHLARIT-EM 194 (296)
T ss_pred ccHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEEC----------CHHHHHHHH-Hc
Confidence 44566666 445567777888999999999999999999999999999877 6673 344433222 22
Q ss_pred CCccCCCCceecC--CCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 113 RSIKDFNEGEKIN--DSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 113 g~~~~~~~~~~~~--~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
+ .+.+. +..+.+ .++|++|.|++...++.+....++ -.+|++-+..|---+- +..+++|+.++
T Consensus 195 G-------~~~~~~~~l~~~l-~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~-~~a~~~Gv~~~ 260 (296)
T PRK08306 195 G-------LSPFHLSELAEEV-GKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF-EYAEKRGIKAL 260 (296)
T ss_pred C-------CeeecHHHHHHHh-CCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe-eehhhCCeEEE
Confidence 2 12221 112233 489999999988888887776663 4477877777642111 23467888776
No 38
>PRK13529 malate dehydrogenase; Provisional
Probab=98.35 E-value=7.9e-06 Score=80.24 Aligned_cols=136 Identities=14% Similarity=0.116 Sum_probs=98.7
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH----CCC------EEEEEeCCCceeeCCCC-C
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AGA------KIVAIQDDKTTIYNPNG-F 100 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~----~g~------~vv~V~D~~G~i~~~~G-l 100 (262)
|-.+.||--+..++.+++|..|.++++.||++.|.|..|.++|++|.. .|. +-+-++|++|-+++... |
T Consensus 269 DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l 348 (563)
T PRK13529 269 DDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDL 348 (563)
T ss_pred cccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcc
Confidence 667899999999999999999999999999999999999999999987 576 23449999999998754 3
Q ss_pred CHHHHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhccC----ceEEEecCCCCC
Q psy14499 101 NIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANGPT 168 (262)
Q Consensus 101 D~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~~----~kiIve~AN~p~ 168 (262)
+..+ ..+......+..++......+..+++ .++.||||-+|. ++.+|++.++.+. -.||+.-+|-..
T Consensus 349 ~~~k-~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 421 (563)
T PRK13529 349 LDFQ-KPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTS 421 (563)
T ss_pred hHHH-HHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 3222 11211111121111100001133444 568899999997 7999999999983 459999999754
No 39
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=98.31 E-value=6.2e-06 Score=81.24 Aligned_cols=130 Identities=17% Similarity=0.107 Sum_probs=98.8
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-----CCC------EEEEEeCCCceeeCCCC-
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-----AGA------KIVAIQDDKTTIYNPNG- 99 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-----~g~------~vv~V~D~~G~i~~~~G- 99 (262)
|-.+.||--+..++.+++|..|.++++.||++.|.|..|.++|++|.+ .|. +-+-++|++|.+++...
T Consensus 295 DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~ 374 (581)
T PLN03129 295 DDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKD 374 (581)
T ss_pred cccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCc
Confidence 667899999999999999999999999999999999999999999987 465 23449999999998653
Q ss_pred -CCHHHHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhcc----CceEEEecCCCCCCHH
Q psy14499 100 -FNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNV----TAKIILEGANGPTTTE 171 (262)
Q Consensus 100 -lD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~----~~kiIve~AN~p~t~e 171 (262)
++..+ +...+.. +. ..+..+++ .+++||||-++. ++.+|++.++.+ +-.||+.-+|-..-||
T Consensus 375 ~l~~~k--~~fa~~~-----~~---~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E 443 (581)
T PLN03129 375 SLQPFK--KPFAHDH-----EP---GASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAE 443 (581)
T ss_pred cChHHH--HHHHhhc-----cc---CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcC
Confidence 44332 2222211 01 11134444 568999999995 699999999998 4569999999753333
No 40
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.22 E-value=5.6e-06 Score=79.39 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++.-.||.|++.+++.+. +..+.|++|+|+|+|.+|+.+++.|..+|++|+ |+| .|+.+.......
T Consensus 189 dn~~gt~~s~~~ai~rat---~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d----------~dp~ra~~A~~~ 254 (425)
T PRK05476 189 DNRYGTGESLLDGIKRAT---NVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTE----------VDPICALQAAMD 254 (425)
T ss_pred cccHHHHhhhHHHHHHhc---cCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEc----------CCchhhHHHHhc
Confidence 555678888876665442 567899999999999999999999999999977 888 566554333322
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCc-eEEEecC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTA-KIILEGA 164 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~-kiIve~A 164 (262)
| .+..+ .++++ ..+||+|+|+.. ++++.+....++. .+++..+
T Consensus 255 -G-------~~v~~-l~eal-~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 255 -G-------FRVMT-MEEAA-ELGDIFVTATGNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred -C-------CEecC-HHHHH-hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence 1 12222 34454 389999999863 5677777777643 3444443
No 41
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.21 E-value=4.5e-05 Score=72.23 Aligned_cols=131 Identities=19% Similarity=0.186 Sum_probs=88.4
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
..+.+--++..+....+..|.++.|++|.|+|+|+||+.+|+.|..+|++|+ +.|.... + . +
T Consensus 92 a~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~-~~dp~~~-------~---------~-~ 153 (378)
T PRK15438 92 AIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTL-LCDPPRA-------D---------R-G 153 (378)
T ss_pred chHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCccc-------c---------c-c
Confidence 3455555556666667777889999999999999999999999999999998 5553100 0 0 0
Q ss_pred CccCCCCceecCCCccccccCceEEeeCCc---------cCcccccchhccC-ceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy14499 114 SIKDFNEGEKINDSKEFWSIPCDILIPAAI---------EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGI 181 (262)
Q Consensus 114 ~~~~~~~~~~~~~~~~il~~~~DIlipaa~---------~~~it~e~a~~~~-~kiIve~AN~p~-t~ea-~~~l~~rgi 181 (262)
. .....+ .++++ ..|||++-+.+ .+.++.+....++ ..+++..+-+++ ..+| .+.|++..+
T Consensus 154 ~-----~~~~~~-L~ell-~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 154 D-----EGDFRS-LDELV-QEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred c-----ccccCC-HHHHH-hhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 0 001112 45666 47999985544 2567777777775 669999999997 4444 577766544
Q ss_pred e-Eeccccc
Q psy14499 182 I-LAPDVIT 189 (262)
Q Consensus 182 ~-~iPD~~a 189 (262)
. .+=|+.-
T Consensus 227 ~ga~LDV~e 235 (378)
T PRK15438 227 LSVVLDVWE 235 (378)
T ss_pred cEEEEecCC
Confidence 2 3445444
No 42
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.21 E-value=7.5e-05 Score=68.29 Aligned_cols=116 Identities=19% Similarity=0.306 Sum_probs=75.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc--Cce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI--PCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~--~~D 136 (262)
++|.|+|+|++|+.+++.|.+.|.+|+ +.| .+.+++.+..+. | ....++++++... ++|
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~d----------r~~~~~~~~~~~-g-------~~~~~~~~e~~~~~~~~d 61 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYD----------RNPEAVEALAEE-G-------ATGADSLEELVAKLPAPR 61 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEE-EEE----------CCHHHHHHHHHC-C-------CeecCCHHHHHhhcCCCC
Confidence 379999999999999999999999987 677 466666555432 2 2222224445432 478
Q ss_pred EEeeCCccCcccccch----hcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 137 ILIPAAIEDQITINNA----NNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 137 Ilipaa~~~~it~e~a----~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
+++-|-+......+.. ..+ ..++|++..+... +.+..+.++++|+.++ | .-.+||+.
T Consensus 62 vvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~ 125 (301)
T PRK09599 62 VVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVW 125 (301)
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHH
Confidence 8887766542322222 222 2457888776543 4556688899999998 4 44556653
No 43
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.20 E-value=8.9e-06 Score=78.76 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=74.0
Q ss_pred HHHHHHHH-HHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 38 GRGVFIIG-SKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 38 g~Gv~~~~-~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
.||...++ ...++..+..+.|++|+|+|+|+||+.+|+.|..+|++|+ ++| .|+.........
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e----------~dp~~a~~A~~~----- 296 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTE----------IDPICALQAAME----- 296 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEe----------CCchhHHHHHhc-----
Confidence 34444433 3445555778999999999999999999999999999977 776 344443222221
Q ss_pred CCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCce-EEEecCCC
Q psy14499 117 DFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAK-IILEGANG 166 (262)
Q Consensus 117 ~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~k-iIve~AN~ 166 (262)
+.+..+ .++++ ..+||++.|+.. ++++.+....++.. +++..+-.
T Consensus 297 ---G~~~~~-leell-~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 297 ---GYQVVT-LEDVV-ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ---Cceecc-HHHHH-hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 222233 44555 489999999764 78888888888643 66665555
No 44
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.16 E-value=2e-05 Score=75.47 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=70.9
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++.-.||.+++ +..++..+..+.|++|+|+|+|.+|+.+++.+..+|++|+ |+| .|+.++....+.
T Consensus 179 dn~~g~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d----------~d~~R~~~A~~~ 244 (413)
T cd00401 179 DNLYGCRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTE----------VDPICALQAAME 244 (413)
T ss_pred cccchhchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEE----------CChhhHHHHHhc
Confidence 44445677664 4455666888999999999999999999999999999977 678 677665544432
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVT 156 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~ 156 (262)
+...++ .++.+ .++||+|+|+.. .+++.+....++
T Consensus 245 --------G~~~~~-~~e~v-~~aDVVI~atG~~~~i~~~~l~~mk 280 (413)
T cd00401 245 --------GYEVMT-MEEAV-KEGDIFVTTTGNKDIITGEHFEQMK 280 (413)
T ss_pred --------CCEEcc-HHHHH-cCCCEEEECCCCHHHHHHHHHhcCC
Confidence 222222 23444 478999999864 556665555553
No 45
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.13 E-value=1.3e-06 Score=68.77 Aligned_cols=90 Identities=18% Similarity=0.284 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCceEEe
Q psy14499 65 GFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPCDILI 139 (262)
Q Consensus 65 GfG~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~DIli 139 (262)
|||+||+.+++.|.+. +.++++|+|++ ...+++ . .... . +.....+.+++++ .++||+|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~-----~-~~~~-~--------~~~~~~~~~~~~~~~~~dvvV 64 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD-----W-AASF-P--------DEAFTTDLEELIDDPDIDVVV 64 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT-----H-HHHH-T--------HSCEESSHHHHHTHTT-SEEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh-----h-hhhc-c--------cccccCCHHHHhcCcCCCEEE
Confidence 8999999999999885 79999999998 666654 1 1111 1 1112222455554 5899999
Q ss_pred eCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 140 PAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 140 paa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
+|+..+.+. +......++|+.+ +.+|+++..
T Consensus 65 E~t~~~~~~----------------------~~~~~~L~~G~~V---Vt~nk~ala 95 (117)
T PF03447_consen 65 ECTSSEAVA----------------------EYYEKALERGKHV---VTANKGALA 95 (117)
T ss_dssp E-SSCHHHH----------------------HHHHHHHHTTCEE---EES-HHHHH
T ss_pred ECCCchHHH----------------------HHHHHHHHCCCeE---EEECHHHhh
Confidence 997653322 1223446799998 689999886
No 46
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.12 E-value=0.0001 Score=67.96 Aligned_cols=110 Identities=23% Similarity=0.283 Sum_probs=76.6
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.+|.|++|.|+|||++|+.+|+++..+|.+|+ ..|+.+. +. .. . .+..+ .++++ .
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~-~~d~~~~-------~~--------~~----~---~~~~~-l~ell-~ 195 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVV-YYSTSGK-------NK--------NE----E---YERVS-LEELL-K 195 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEE-EECCCcc-------cc--------cc----C---ceeec-HHHHh-h
Confidence 36899999999999999999999999999998 4454211 00 00 0 11122 45666 4
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCeEecccc
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGIILAPDVI 188 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~~iPD~~ 188 (262)
.||+++-+.+. +.|+.+...+++ .-+++.-+-+++ .. ...+.|++.-|...=|+.
T Consensus 196 ~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~ 258 (311)
T PRK08410 196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDVL 258 (311)
T ss_pred cCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEecC
Confidence 79999877653 677778888885 669999999997 33 345777776565334443
No 47
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.10 E-value=1.6e-05 Score=67.41 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|+ . ...-...... ..+..+ .++++
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~-~~d~-------~---~~~~~~~~~~--------~~~~~~-l~ell- 89 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVI-GYDR-------S---PKPEEGADEF--------GVEYVS-LDELL- 89 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEE-EEES-------S---CHHHHHHHHT--------TEEESS-HHHHH-
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeE-Eecc-------c---CChhhhcccc--------cceeee-hhhhc-
Confidence 568999999999999999999999999999998 4442 1 1111111111 122222 55666
Q ss_pred cCceEEeeCCc-----cCcccccchhccC-ceEEEecCCCCC-CHHH-HHHHHHCCCe
Q psy14499 133 IPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~-----~~~it~e~a~~~~-~kiIve~AN~p~-t~ea-~~~l~~rgi~ 182 (262)
..||+++-+.+ .+.++.+...+++ --+++.-+.+++ ..+| .+.|++.-+.
T Consensus 90 ~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 90 AQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp HH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred chhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 47999998876 3777778888885 559999999987 4444 4666665444
No 48
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.09 E-value=2.6e-05 Score=74.47 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS 114 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~ 114 (262)
-.||.+++.+ +++..+..+.|++|+|+|+|.+|+.+++.++.+|++|+ |+| .|+.+.......
T Consensus 175 yg~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d----------~dp~r~~~A~~~--- 237 (406)
T TIGR00936 175 YGTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTE----------VDPIRALEAAMD--- 237 (406)
T ss_pred cccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEe----------CChhhHHHHHhc---
Confidence 3566655433 34444667899999999999999999999999999987 677 566554333321
Q ss_pred ccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccC-ceEEEecCCCC--CC-HHHHHHHHH
Q psy14499 115 IKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVT-AKIILEGANGP--TT-TEADDILRD 178 (262)
Q Consensus 115 ~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~-~kiIve~AN~p--~t-~ea~~~l~~ 178 (262)
+....+ .++.+ .++||+|.|+.. ++++.+....++ ..+++..+-.+ +. ++..+.+.+
T Consensus 238 -----G~~v~~-leeal-~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 238 -----GFRVMT-MEEAA-KIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred -----CCEeCC-HHHHH-hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 122232 33444 479999998864 556766666664 33555544444 44 333444433
No 49
>PLN02928 oxidoreductase family protein
Probab=98.08 E-value=0.0001 Score=69.05 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC--CceecCCCccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN--EGEKINDSKEF 130 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~--~~~~~~~~~~i 130 (262)
+.++.|+++.|+|+|++|+.+|+.|..+|++|+ +.|+... + +......+.. ..+..+. .....+ .+++
T Consensus 154 ~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~-~~dr~~~---~---~~~~~~~~~~--~~~~~~~~~~~~~~~-L~el 223 (347)
T PLN02928 154 GDTLFGKTVFILGYGAIGIELAKRLRPFGVKLL-ATRRSWT---S---EPEDGLLIPN--GDVDDLVDEKGGHED-IYEF 223 (347)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEE-EECCCCC---h---hhhhhhcccc--ccccccccccCcccC-HHHH
Confidence 346899999999999999999999999999998 4454210 0 0000000000 0000000 011112 4556
Q ss_pred cccCceEEeeCCc-----cCcccccchhccC-ceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy14499 131 WSIPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGI 181 (262)
Q Consensus 131 l~~~~DIlipaa~-----~~~it~e~a~~~~-~kiIve~AN~p~-t~ea-~~~l~~rgi 181 (262)
+ ..+||++-+.+ .+.++.+....++ ..+++.-+-+++ ..+| .+.|++.-|
T Consensus 224 l-~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 224 A-GEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL 281 (347)
T ss_pred H-hhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 6 47999998876 3677777777784 569999999997 4443 566666544
No 50
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.06 E-value=1.3e-05 Score=66.75 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=78.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.++|+|++|+.+|+.|.+.|+.|. +.| .+.+++.++.+.. .+..+++.++. ..||++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d----------~~~~~~~~~~~~g--------~~~~~s~~e~~-~~~dvv 61 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYD----------RSPEKAEALAEAG--------AEVADSPAEAA-EQADVV 61 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE-EEE----------SSHHHHHHHHHTT--------EEEESSHHHHH-HHBSEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE-eec----------cchhhhhhhHHhh--------hhhhhhhhhHh-hcccce
Confidence 589999999999999999999999987 777 6788877777652 34444345555 478999
Q ss_pred eeCCccCcccccc------hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 139 IPAAIEDQITINN------ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 139 ipaa~~~~it~e~------a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
+-|-+.+....+. ...+ +.++|++..+... +.+..+.++++|+.|+=-.+. ||..
T Consensus 62 i~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~--Gg~~ 125 (163)
T PF03446_consen 62 ILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVS--GGPP 125 (163)
T ss_dssp EE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEE--SHHH
T ss_pred EeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeee--cccc
Confidence 9886643322222 2223 6779998887754 566778889999999866665 6653
No 51
>PLN02494 adenosylhomocysteinase
Probab=98.04 E-value=3.1e-05 Score=75.00 Aligned_cols=110 Identities=14% Similarity=0.204 Sum_probs=73.6
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++.-.||.+++ +..++..+..+.|++|+|+|+|.+|+.+|+.+..+|++|+ ++| .|+.+.......
T Consensus 231 Dn~yGtgqS~~---d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e----------~dp~r~~eA~~~ 296 (477)
T PLN02494 231 DNLYGCRHSLP---DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTE----------IDPICALQALME 296 (477)
T ss_pred hccccccccHH---HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEe----------CCchhhHHHHhc
Confidence 33445666653 3444555777899999999999999999999999999987 676 455443333222
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCce-EEEecCC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAK-IILEGAN 165 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~k-iIve~AN 165 (262)
+...++ .++++ ..+||++.|+.. ++++.+....++.. +++..+.
T Consensus 297 --------G~~vv~-leEal-~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 297 --------GYQVLT-LEDVV-SEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred --------CCeecc-HHHHH-hhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 111222 34444 378999998874 56788888888543 4444444
No 52
>PRK07574 formate dehydrogenase; Provisional
Probab=98.04 E-value=6.7e-05 Score=71.26 Aligned_cols=158 Identities=10% Similarity=0.061 Sum_probs=93.1
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|+ ...+.+. . +.. +.+...+.++++ .
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~-~~dr-------~~~~~~~-~---~~~-------g~~~~~~l~ell-~ 247 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLH-YTDR-------HRLPEEV-E---QEL-------GLTYHVSFDSLV-S 247 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EECC-------CCCchhh-H---hhc-------CceecCCHHHHh-h
Confidence 35899999999999999999999999999988 4453 2122111 1 111 112122245666 5
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCCC--HHHHHHHHHCCCe-EeccccccchhhHHHHHHHHhh
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPTT--TEADDILRDKGII-LAPDVITNAGGVIVSYFEWVQN 204 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~t--~ea~~~l~~rgi~-~iPD~~aN~GGvi~s~~E~~~~ 204 (262)
.|||++-+.+. ++++++....++ ..+++.-+-+++- .+..+.|++.-|. ..=|+.-+---...+-+.-+.|
T Consensus 248 ~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pN 327 (385)
T PRK07574 248 VCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPR 327 (385)
T ss_pred cCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCC
Confidence 89999988763 566677777774 5699999999873 3445777776554 3333332110000011111112
Q ss_pred ---hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 205 ---LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 205 ---~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
.+|..+...+...++.+...+++.+.+
T Consensus 328 vilTPHiag~T~e~~~~~~~~~~~ni~~~~ 357 (385)
T PRK07574 328 NGMTPHISGTTLSAQARYAAGTREILECFF 357 (385)
T ss_pred eEECCccccCcHHHHHHHHHHHHHHHHHHH
Confidence 234555555666665555555555544
No 53
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=98.04 E-value=4.9e-05 Score=74.70 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=97.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH----CCC------EEEEEeCCCceeeCCCC--
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AGA------KIVAIQDDKTTIYNPNG-- 99 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~----~g~------~vv~V~D~~G~i~~~~G-- 99 (262)
|-.+.||--+..++.+++|..|.++++.||++.|.|..|.++|++|.. .|. +-+-++|++|-+++..+
T Consensus 271 DDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~ 350 (559)
T PTZ00317 271 DDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDK 350 (559)
T ss_pred ccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcc
Confidence 667899999999999999999999999999999999999999999874 676 33449999999998753
Q ss_pred CCHHHHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhccC----ceEEEecCCCC
Q psy14499 100 FNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANGP 167 (262)
Q Consensus 100 lD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~~----~kiIve~AN~p 167 (262)
++..+ ....+... ..++.. ..+..+++ .++.||||-+|. ++.+|++.++.+. -.||+.-+|-.
T Consensus 351 l~~~k--~~fa~~~~--~~~~~~-~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt 419 (559)
T PTZ00317 351 LAKHK--VPFARTDI--SAEDSS-LKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPT 419 (559)
T ss_pred ccHHH--HHHhcccc--cccccc-CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCC
Confidence 44333 21221100 000000 11133443 578899999996 7999999999884 45999999975
No 54
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.03 E-value=0.00029 Score=64.17 Aligned_cols=131 Identities=14% Similarity=0.061 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|+..+++. .+.++++++|+|+|.|.+|++++..|.+.|++-+.|.| .+.++..++.+.... .
T Consensus 111 ~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~n----------R~~~ka~~la~~l~~--~ 174 (284)
T PRK12549 111 WSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFD----------VDPARAAALADELNA--R 174 (284)
T ss_pred HHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEC----------CCHHHHHHHHHHHHh--h
Confidence 6677776653 33467889999999999999999999999985555888 455665555443211 0
Q ss_pred CCCceecCCCcc---ccccCceEEeeCCccCccccc--c--hhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 118 FNEGEKINDSKE---FWSIPCDILIPAAIEDQITIN--N--ANNV-TAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 118 ~~~~~~~~~~~~---il~~~~DIlipaa~~~~it~e--~--a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
++...... .++ .+ .++|++|.|++.+.-... + ...+ +..+|++...+|.....-+.-+++|..++..
T Consensus 175 ~~~~~~~~-~~~~~~~~-~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~G 249 (284)
T PRK12549 175 FPAARATA-GSDLAAAL-AAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALGCRTLDG 249 (284)
T ss_pred CCCeEEEe-ccchHhhh-CCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCCCeEecC
Confidence 11111111 122 22 479999999876542211 1 1223 3458999999987545555668899887643
No 55
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.00 E-value=0.00011 Score=69.62 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
+.+--++..+..+.++.|.++.|++|.|+|+|+||+.+++.|..+|++|+ ++|.... . .. +
T Consensus 94 aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~-~~Dp~~~----------~-----~~-~-- 154 (381)
T PRK00257 94 GVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVL-VCDPPRQ----------E-----AE-G-- 154 (381)
T ss_pred HHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEE-EECCccc----------c-----cc-c--
Confidence 44444455555666777889999999999999999999999999999998 5563110 0 00 0
Q ss_pred cCCCCceecCCCccccccCceEEeeCCcc---------CcccccchhccC-ceEEEecCCCCC-CHH-HHHHHHHCCC
Q psy14499 116 KDFNEGEKINDSKEFWSIPCDILIPAAIE---------DQITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGI 181 (262)
Q Consensus 116 ~~~~~~~~~~~~~~il~~~~DIlipaa~~---------~~it~e~a~~~~-~kiIve~AN~p~-t~e-a~~~l~~rgi 181 (262)
.....+ .++++ .+|||++-+.+. +.++.+....++ ..+++..+-+++ ..+ ..+.|++.-+
T Consensus 155 ----~~~~~~-l~ell-~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i 226 (381)
T PRK00257 155 ----DGDFVS-LERIL-EECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGED 226 (381)
T ss_pred ----CccccC-HHHHH-hhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCC
Confidence 001112 44555 378888755442 567777777774 558888888886 333 3466655543
No 56
>PLN03139 formate dehydrogenase; Provisional
Probab=97.96 E-value=0.0001 Score=70.10 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=74.1
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|. ...+.+.. ++. +.+..++.++++ .
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~-~~d~-------~~~~~~~~----~~~-------g~~~~~~l~ell-~ 254 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLL-YHDR-------LKMDPELE----KET-------GAKFEEDLDAML-P 254 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEE-EECC-------CCcchhhH----hhc-------CceecCCHHHHH-h
Confidence 36899999999999999999999999999987 4553 22222211 111 122222245666 5
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCCC-HH-HHHHHHHCCCe
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPTT-TE-ADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~t-~e-a~~~l~~rgi~ 182 (262)
+|||++-+.+. +.++.+....++ ..+++.-+-+++- .+ ..+.|++.-|.
T Consensus 255 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 255 KCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred hCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 79999988773 566666666663 5699999999873 33 35777766554
No 57
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.95 E-value=0.00013 Score=67.88 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=91.3
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|... +... .+..+ ....+ .++++ .
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~--------~~~~----~~~~~-------~~~~~-l~ell-~ 203 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL-YYSRTR--------KPEA----EKELG-------AEYRP-LEELL-R 203 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC--------Chhh----HHHcC-------CEecC-HHHHH-h
Confidence 46899999999999999999999999999987 556421 1111 11111 11122 45565 4
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCeE-eccccccchhhHHHHHHHHhh
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGIIL-APDVITNAGGVIVSYFEWVQN 204 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~~-iPD~~aN~GGvi~s~~E~~~~ 204 (262)
++|+++-|.+. +.++.+....++ ..+++.-+-+++ .. ...+.|++.-|.- .=|+..+=--. -+.+.-+.|
T Consensus 204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~n 282 (333)
T PRK13243 204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKN 282 (333)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCC
Confidence 89999988874 556666666664 558889888887 33 3457776654432 22332211100 111111122
Q ss_pred ---hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 205 ---LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 205 ---~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
.+|..|..++...++.+.+.+++.+.+
T Consensus 283 vilTPHia~~t~e~~~~~~~~~~~ni~~~~ 312 (333)
T PRK13243 283 VVLAPHIGSATFEAREGMAELVAENLIAFK 312 (333)
T ss_pred EEECCcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 236666666666666555555554443
No 58
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.94 E-value=0.00014 Score=67.57 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.|+||.|+|||++|+.+|+.|..+|++|+ ..|. . .... .. ...+...+++.++++
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~-~~d~-------~--~~~~---~~-------~~~~~~~~~~Ld~lL- 195 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVI-GYDP-------Y--SPRE---RA-------GVDGVVGVDSLDELL- 195 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEE-EECC-------C--Cchh---hh-------ccccceecccHHHHH-
Confidence 457889999999999999999999999999998 4442 1 0111 00 000122223255677
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
..+||++-..+. ++|+.+...+++ .-+++..|-+++ . +...+.|++.-|.
T Consensus 196 ~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~ 253 (324)
T COG0111 196 AEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA 253 (324)
T ss_pred hhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence 589998866553 777888888884 449999999998 3 3335666654443
No 59
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.93 E-value=0.00085 Score=60.79 Aligned_cols=129 Identities=15% Similarity=0.205 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
.+.|...+++. ..+.++++++++|.|.|.+|+++++.|.+.|+ +|+ |+++ +.+++.++.++....
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~-v~~R----------~~~~a~~l~~~~~~~ 170 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEIT-IVNR----------TVERAEELAKLFGAL 170 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEE-EEeC----------CHHHHHHHHHHhhhc
Confidence 45565555542 24668899999999999999999999999994 555 7773 455555554433211
Q ss_pred cCCCCcee-cCCCccccccCceEEeeCCccCccccc-----chhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 116 KDFNEGEK-INDSKEFWSIPCDILIPAAIEDQITIN-----NANNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 116 ~~~~~~~~-~~~~~~il~~~~DIlipaa~~~~it~e-----~a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
. .... .+ ..+.+ .++||+|-|++.+.-... +...+ ...+|++..-.|......+.-+++|+.++
T Consensus 171 ~---~~~~~~~-~~~~~-~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~ 241 (278)
T PRK00258 171 G---KAELDLE-LQEEL-ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGARTI 241 (278)
T ss_pred c---ceeeccc-chhcc-ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcCeec
Confidence 0 0111 11 11223 479999999987654311 12233 35689999999974444455588998776
No 60
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.92 E-value=0.00041 Score=66.32 Aligned_cols=112 Identities=17% Similarity=0.260 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC
Q psy14499 39 RGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF 118 (262)
Q Consensus 39 ~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~ 118 (262)
-++..+.-..++..-.+|++++|.|+|.|.+|.-+|+.|.++|.+-+.|+.+ ..++..++.++.+
T Consensus 159 VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------T~erA~~La~~~~----- 223 (414)
T COG0373 159 VSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------TLERAEELAKKLG----- 223 (414)
T ss_pred cchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------CHHHHHHHHHHhC-----
Confidence 4445555555665555699999999999999999999999999877778873 5677777766654
Q ss_pred CCceecCCCccccc--cCceEEeeC--CccCcccccchhcc---Cce-EEEecCCCCC
Q psy14499 119 NEGEKINDSKEFWS--IPCDILIPA--AIEDQITINNANNV---TAK-IILEGANGPT 168 (262)
Q Consensus 119 ~~~~~~~~~~~il~--~~~DIlipa--a~~~~it~e~a~~~---~~k-iIve~AN~p~ 168 (262)
++.++ .+++.+ .++||+|-| ++..+++.++.... +.+ ++++-||.+-
T Consensus 224 --~~~~~-l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 224 --AEAVA-LEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred --Ceeec-HHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence 23232 333332 599999999 45688888777665 233 9999999875
No 61
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.90 E-value=0.00043 Score=67.56 Aligned_cols=156 Identities=16% Similarity=0.208 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|+..++ +..+.++++++++|.|.|.+|++++..|.+.|++++ +.| -+.+++.+..+..+.
T Consensus 316 ~~G~~~~l----~~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~----------R~~~~~~~la~~~~~--- 377 (477)
T PRK09310 316 GEGLFSLL----KQKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFN----------RTKAHAEALASRCQG--- 377 (477)
T ss_pred HHHHHHHH----HhcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHHhcc---
Confidence 56666555 445778899999999999999999999999999876 666 345555554443210
Q ss_pred CCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCC-CHHHHHHHHHCCCeEeccccccchhhHH
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPT-TTEADDILRDKGIILAPDVITNAGGVIV 196 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~-t~ea~~~l~~rgi~~iPD~~aN~GGvi~ 196 (262)
....+++..+ + .++|++|-|++.+..-.+ .+ .++|++-.-+|. |+ ..+..+++|+.++...---..=. .
T Consensus 378 --~~~~~~~~~~-l-~~~DiVInatP~g~~~~~---~l-~~~v~D~~Y~P~~T~-ll~~A~~~G~~~~~G~~Ml~~Qa-~ 447 (477)
T PRK09310 378 --KAFPLESLPE-L-HRIDIIINCLPPSVTIPK---AF-PPCVVDINTLPKHSP-YTQYARSQGSSIIYGYEMFAEQA-L 447 (477)
T ss_pred --ceechhHhcc-c-CCCCEEEEcCCCCCcchh---HH-hhhEEeccCCCCCCH-HHHHHHHCcCEEECcHHHHHHHH-H
Confidence 0001110111 2 479999999986643222 12 248999998887 55 55666889988763321100000 1
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy14499 197 SYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229 (262)
Q Consensus 197 s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 229 (262)
-.|| .|+..+..++++...++.+.+
T Consensus 448 ~~f~--------lw~g~~~~~~~~~~~~~~~~~ 472 (477)
T PRK09310 448 LQFR--------LWFPTLLFKHLEKTFRRRVAN 472 (477)
T ss_pred HHHH--------HHcCCcccHHHHHHHHHHHHH
Confidence 1122 266667777777776665543
No 62
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.88 E-value=5.8e-05 Score=70.37 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=80.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 31 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 31 ~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.++.-.||.+.+-++..+ .+.-+.|++++|.|||-||+++|..|...|++|+ |++ +||-..++..-
T Consensus 185 FDNrYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtE----------vDPI~AleA~M 250 (420)
T COG0499 185 FDNRYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTE----------VDPIRALEAAM 250 (420)
T ss_pred cccccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCeEE-EEe----------cCchHHHHHhh
Confidence 456667888776665544 3566899999999999999999999999999988 988 77765554432
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEe
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILE 162 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve 162 (262)
. +.++++ .++.. ...||||-|+. .++|+.|....++-..|+.
T Consensus 251 d--------Gf~V~~-m~~Aa-~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~ 293 (420)
T COG0499 251 D--------GFRVMT-MEEAA-KTGDIFVTATGNKDVIRKEHFEKMKDGAILA 293 (420)
T ss_pred c--------CcEEEE-hHHhh-hcCCEEEEccCCcCccCHHHHHhccCCeEEe
Confidence 2 334443 33333 36799999987 6999999999997665553
No 63
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.88 E-value=0.0015 Score=58.93 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
-++|...+++ ..+...++++++|.|.|.+|+.++..|.+.|.+|+ |.| -+.+++.++.++...
T Consensus 100 D~~G~~~~l~----~~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~----------R~~~~~~~la~~~~~-- 162 (270)
T TIGR00507 100 DGIGLVSDLE----RLIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IAN----------RTVSKAEELAERFQR-- 162 (270)
T ss_pred CHHHHHHHHH----hcCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHHHhh--
Confidence 4667766654 33445678999999999999999999999998766 766 345555554443211
Q ss_pred CCCCceecCCCccccccCceEEeeCCccCccccc---c--hhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEec
Q psy14499 117 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITIN---N--ANNV-TAKIILEGANGPTTTEADDILRDKGIILAP 185 (262)
Q Consensus 117 ~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e---~--a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iP 185 (262)
+......+ .++....++|++|-|++.+..... + ...+ ..++|++..-.|......+..+++|+.++.
T Consensus 163 -~~~~~~~~-~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 163 -YGEIQAFS-MDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPFLAEAKSLGTKTID 235 (270)
T ss_pred -cCceEEec-hhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCCeeeC
Confidence 11111222 222222479999999986532211 1 1223 345899998888633466677899988763
No 64
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.82 E-value=9.1e-05 Score=60.01 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc--
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-- 131 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-- 131 (262)
.++++++++|+|.|.+|+.++..|.+.|++-+.|+++ +.+++.++.++.+.. ..+.++ .+++.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------t~~ra~~l~~~~~~~----~~~~~~-~~~~~~~ 72 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------TPERAEALAEEFGGV----NIEAIP-LEDLEEA 72 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------SHHHHHHHHHHHTGC----SEEEEE-GGGHCHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------CHHHHHHHHHHcCcc----ccceee-HHHHHHH
Confidence 4889999999999999999999999999986668773 677777776654210 112222 22332
Q ss_pred ccCceEEeeCCcc--CcccccchhccCc--eEEEecCCCC-CCHH
Q psy14499 132 SIPCDILIPAAIE--DQITINNANNVTA--KIILEGANGP-TTTE 171 (262)
Q Consensus 132 ~~~~DIlipaa~~--~~it~e~a~~~~~--kiIve~AN~p-~t~e 171 (262)
-.++||+|-|++. ..++.+....... ++|++-|+-+ +.|+
T Consensus 73 ~~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~ 117 (135)
T PF01488_consen 73 LQEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDPE 117 (135)
T ss_dssp HHTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-TT
T ss_pred HhhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccccCCCCChh
Confidence 2589999999875 4778887777653 6999998642 3444
No 65
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.79 E-value=0.00068 Score=62.67 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=72.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++.|++|.|+|+|++|+.+|++|..+|++|++. |... - .. . . ....+ .++++ ..
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~-~~~~-------~--~~---~--~---------~~~~~-l~ell-~~ 197 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA-EHKG-------A--SV---C--R---------EGYTP-FEEVL-KQ 197 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE-CCCc-------c--cc---c--c---------cccCC-HHHHH-Hh
Confidence 689999999999999999999999999999853 4211 0 00 0 0 00112 45666 47
Q ss_pred ceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHH-HHHHHHHCCCe
Q psy14499 135 CDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGII 182 (262)
Q Consensus 135 ~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~e-a~~~l~~rgi~ 182 (262)
||+++-+.+. +.++.+...+++ .-+++.-+-+++ ..+ ..+.|++.-|.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 9999977653 677778888884 669999999997 444 35777766554
No 66
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.79 E-value=0.00034 Score=64.93 Aligned_cols=108 Identities=11% Similarity=0.131 Sum_probs=74.0
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFF-KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 131 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il 131 (262)
|.+|.|+++.|+|+|++|+.+|+.|. .+|.+|+ ..|... +.+.. +.. +.+..+ .++++
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~-~~~~~~--------~~~~~----~~~-------~~~~~~-l~ell 198 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPIL-YNARRH--------HKEAE----ERF-------NARYCD-LDTLL 198 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEE-EECCCC--------chhhH----Hhc-------CcEecC-HHHHH
Confidence 44689999999999999999999998 8999987 444210 11110 111 122223 56666
Q ss_pred ccCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCe
Q psy14499 132 SIPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGII 182 (262)
Q Consensus 132 ~~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~ 182 (262)
..||+++-+.+. +.++.+....++ .-+++.-+-+++ .. ...+.|++.-|.
T Consensus 199 -~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 199 -QESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred -HhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 589999887653 667777777774 559999999998 33 345777766553
No 67
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.78 E-value=0.00013 Score=66.07 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHH--CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFK--AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~--~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
++.+||.|+|+|.+|+..++.|.+ .++++++|+| -++++..+..++.+. ...+++.++++ .
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~d----------r~~~~a~~~a~~~g~------~~~~~~~eell-~ 66 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAV----------RDPQRHADFIWGLRR------PPPVVPLDQLA-T 66 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEEC----------CCHHHHHHHHHhcCC------CcccCCHHHHh-c
Confidence 567899999999999999999986 4899999988 466666555544331 11223245666 4
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCC-CCHHHHHHHHHCCCeE
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGP-TTTEADDILRDKGIIL 183 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p-~t~ea~~~l~~rgi~~ 183 (262)
++|+++.|++.+.. .+.+... ...++++..... ...+..+..+++|+.+
T Consensus 67 ~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 67 HADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred CCCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 79999999987654 4443332 344666532211 1345556668888766
No 68
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.77 E-value=0.00047 Score=64.08 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=77.4
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.|+|+.|+|+|.+|+.+|+.++.+|.+|+ ..| +... ++. .+ .. +.+.++ .++++
T Consensus 141 ~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~-------~~~~-~~~-~~----~~------~~~y~~-l~ell- 198 (324)
T COG1052 141 GFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYD-------RSPN-PEA-EK----EL------GARYVD-LDELL- 198 (324)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EEC-------CCCC-hHH-Hh----hc------Cceecc-HHHHH-
Confidence 357899999999999999999999999999987 434 3322 111 11 11 133344 56677
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC--CHHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT--TTEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~--t~ea~~~l~~rgi~ 182 (262)
..+||++-..+. +.||.+...+++ .-+++.-+-+++ ++...+.|++.-|.
T Consensus 199 ~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 199 AESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred HhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc
Confidence 589999876653 677777777775 469999999998 34456888887665
No 69
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.75 E-value=0.0005 Score=58.67 Aligned_cols=124 Identities=16% Similarity=0.158 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS 114 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~ 114 (262)
-|++..+..++..++++|.++++++++|.|. |.+|+.+++.|.+.|++|+ +.++ +.+++.+..+....
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R----------~~~~~~~l~~~l~~ 74 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGR----------DLERAQKAADSLRA 74 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcC----------CHHHHHHHHHHHHh
Confidence 5778888888888988899999999999996 9999999999999999887 5452 34444444332110
Q ss_pred ccCCCCcee--cCCCcc---ccccCceEEeeCCccCcccccchh-ccC-ceEEEecCCCC-CCHHH
Q psy14499 115 IKDFNEGEK--INDSKE---FWSIPCDILIPAAIEDQITINNAN-NVT-AKIILEGANGP-TTTEA 172 (262)
Q Consensus 115 ~~~~~~~~~--~~~~~~---il~~~~DIlipaa~~~~it~e~a~-~~~-~kiIve~AN~p-~t~ea 172 (262)
..+. .... ..+.++ .+ .++|++|-|+.....+..... ..+ .++|++-+..| ++++.
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~-~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~ 138 (194)
T cd01078 75 RFGE-GVGAVETSDDAARAAAI-KGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIEG 138 (194)
T ss_pred hcCC-cEEEeeCCCHHHHHHHH-hcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCccc
Confidence 0000 0111 111222 23 489999999886653222222 122 46889876665 46553
No 70
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.74 E-value=0.00019 Score=65.61 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=101.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc--cCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--IPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~--~~~D 136 (262)
++|.|+|+|++|..+++.|.+.|.+|+ +.| .+++++.++.+... ...++.+++.+ .++|
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~d----------r~~~~~~~l~~~g~--------~~~~s~~~~~~~~~~~d 61 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYD----------HDQDAVKAMKEDRT--------TGVANLRELSQRLSAPR 61 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHcCC--------cccCCHHHHHhhcCCCC
Confidence 379999999999999999999999987 567 57777666654321 11111223322 3689
Q ss_pred EEeeCCccCcccccc----hhcc-CceEEEecCCCC--CCHHHHHHHHHCCCeEeccccc------------cchhhHHH
Q psy14499 137 ILIPAAIEDQITINN----ANNV-TAKIILEGANGP--TTTEADDILRDKGIILAPDVIT------------NAGGVIVS 197 (262)
Q Consensus 137 Ilipaa~~~~it~e~----a~~~-~~kiIve~AN~p--~t~ea~~~l~~rgi~~iPD~~a------------N~GGvi~s 197 (262)
+++-|.+.. ...+. ++.+ +-++|++..|.. .|.+..+.++++|+.++--.+. ..||=-.
T Consensus 62 vIi~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~- 139 (298)
T TIGR00872 62 VVWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGE- 139 (298)
T ss_pred EEEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHH-
Confidence 999887765 33333 2333 357999999984 3666778889999988743332 2222111
Q ss_pred HHHHHh----hhc----CCCC--------CHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHH
Q psy14499 198 YFEWVQ----NLS----NLLW--------TEQEINLRLNNIICNAFDAIWELANTK--KVSLRTAAFII 248 (262)
Q Consensus 198 ~~E~~~----~~~----~~~~--------~~~~v~~~l~~~~~~~~~~v~~~a~~~--~~~~r~aa~~~ 248 (262)
.++-++ ... +..+ ..+.+...+...+-..+.+-+..+++. ++++.+.+.++
T Consensus 140 ~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 140 AFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred HHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 112111 111 0111 012233444555556777788888876 56777766553
No 71
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.74 E-value=0.00033 Score=64.51 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=71.0
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.+|.|++|.|+|+|++|+.+|++|..+|++|+ +.|++. .++|.. ....+.++++ .
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~-~~~r~~---~~~~~~--------------------~~~~~l~ell-~ 172 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIY-AYTRSY---VNDGIS--------------------SIYMEPEDIM-K 172 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC---cccCcc--------------------cccCCHHHHH-h
Confidence 47899999999999999999999999999998 445421 111110 0011145566 4
Q ss_pred CceEEeeCCcc-----Ccccccchhcc-CceEEEecCCCCC-C-HHHHHHHHHCCC
Q psy14499 134 PCDILIPAAIE-----DQITINNANNV-TAKIILEGANGPT-T-TEADDILRDKGI 181 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~-~~kiIve~AN~p~-t-~ea~~~l~~rgi 181 (262)
+||+++-|.+. ++++.+....+ +..+++.-+-+++ . .+..+.|+++-+
T Consensus 173 ~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 173 KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred hCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence 89999988764 45666666666 3558888888876 3 444677776644
No 72
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.73 E-value=0.0006 Score=67.28 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=94.0
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.|++|.|+|+|++|+.+|+.|..+|++|+ ..|+ . .+.+.. ++. +.+..++.++++
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~-~~d~-------~-~~~~~~----~~~-------g~~~~~~l~ell- 191 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVL-AYDP-------Y-ISPERA----EQL-------GVELVDDLDELL- 191 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EECC-------C-CChhHH----Hhc-------CCEEcCCHHHHH-
Confidence 456899999999999999999999999999988 4342 2 122211 111 122222245666
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCeE-eccccccchhhHHHHHHHHh
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGIIL-APDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~~-iPD~~aN~GGvi~s~~E~~~ 203 (262)
.+||+++-|.+. +.++.+....++ ..+++.-+-+++ . .+..+.|++..|.- .=|+..+=-.. -+.+.-..
T Consensus 192 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~ 270 (525)
T TIGR01327 192 ARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPT-DNPLFDLD 270 (525)
T ss_pred hhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCC-CChhhcCC
Confidence 489999988763 566666666663 558999999987 3 33457777776643 23332221111 11111011
Q ss_pred h---hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 204 N---LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 204 ~---~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
| .+|..|..++...++...+.+++.+.+
T Consensus 271 nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~ 301 (525)
T TIGR01327 271 NVIATPHLGASTREAQENVATQVAEQVLDAL 301 (525)
T ss_pred CeEECCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 2 236666666666666555555555544
No 73
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.73 E-value=3.1e-05 Score=61.94 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=62.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGF-GNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
+||+|.|+ |++|+.+++.+.+ .+..++++.|++..-+ .|-|..++..... .+....++.++++.. +|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~--~g~d~g~~~~~~~--------~~~~v~~~l~~~~~~-~D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAK--VGKDVGELAGIGP--------LGVPVTDDLEELLEE-AD 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTT--TTSBCHHHCTSST---------SSBEBS-HHHHTTH--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccc--ccchhhhhhCcCC--------cccccchhHHHhccc-CC
Confidence 48999999 9999999999988 7999999999766222 3556655432221 122233334556654 99
Q ss_pred EEeeCCccCccc--ccchhccCceEEEecCCCCCCHHHHHHHHH
Q psy14499 137 ILIPAAIEDQIT--INNANNVTAKIILEGANGPTTTEADDILRD 178 (262)
Q Consensus 137 Ilipaa~~~~it--~e~a~~~~~kiIve~AN~p~t~ea~~~l~~ 178 (262)
|+|+++.+.... -+.+.+.+..+|+.-... +++..+.|++
T Consensus 70 VvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~--~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF--SDEQIDELEE 111 (124)
T ss_dssp EEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS--HHHHHHHHHH
T ss_pred EEEEcCChHHhHHHHHHHHhCCCCEEEECCCC--CHHHHHHHHH
Confidence 999999544332 122333355666654332 4444444444
No 74
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.72 E-value=0.0001 Score=70.84 Aligned_cols=162 Identities=15% Similarity=0.087 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 126 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~----------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 126 (262)
+..+|+|.|+|+||+.+++.|.+. +.++++|+|++..-. .+++ +++....++
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~----------------~~~~~~~~d 63 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVD----------------LPGILLTTD 63 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCC----------------CcccceeCC
Confidence 457999999999999999988653 578999999532111 1111 111122233
Q ss_pred Ccccc-ccCceEEeeCCccCcccccchhc-c-CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchhh---HHH
Q psy14499 127 SKEFW-SIPCDILIPAAIEDQITINNANN-V-TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGV---IVS 197 (262)
Q Consensus 127 ~~~il-~~~~DIlipaa~~~~it~e~a~~-~-~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GGv---i~s 197 (262)
.++++ +.+.||+++|+.+.....+.+.. + ..|.|+-....+.. ++..+..+++|+.+. |-+..||- +..
T Consensus 64 ~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~--fEasV~ggiPii~~ 141 (426)
T PRK06349 64 PEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY--FEAAVAGGIPIIKA 141 (426)
T ss_pred HHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE--EEEEeeccCchHHH
Confidence 45666 35799999998654333333322 2 34666654333332 444555578898776 55554533 333
Q ss_pred HHHHHhhhc-----C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 198 YFEWVQNLS-----N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 198 ~~E~~~~~~-----~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
..+.+.... + +.-+-.-+..++++. ...+.+++..|++.|.
T Consensus 142 l~~~l~~~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~Gy 188 (426)
T PRK06349 142 LREGLAANRITRVMGIVNGTTNYILTKMTEE-GLSFEDALKEAQRLGY 188 (426)
T ss_pred HHhhcccCCeeEEEEEEeCcHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence 333322100 0 001222345555432 3468899999998875
No 75
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.71 E-value=0.00013 Score=65.71 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=68.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
+||.|+|+|++|+.+++.|.+. +..+++|+| .+.++..++.+..+ ...+++.++++ .++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d----------~~~~~a~~~a~~~~-------~~~~~~~~ell-~~~D 63 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYD----------RNLEKAENLASKTG-------AKACLSIDELV-EDVD 63 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEEC----------CCHHHHHHHHHhcC-------CeeECCHHHHh-cCCC
Confidence 5899999999999999998875 588899988 46666555544322 22233355666 6899
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecC----CCCCCHHHHHHHHHCCCeEe
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGA----NGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~A----N~p~t~ea~~~l~~rgi~~i 184 (262)
+++.|+..+.. .+.+... +..+|+... +.++..+..+..+++|+.+.
T Consensus 64 vVvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~ 117 (265)
T PRK13304 64 LVVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIY 117 (265)
T ss_pred EEEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence 99999976554 3333322 344666543 22223344555677886554
No 76
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.70 E-value=0.0011 Score=61.80 Aligned_cols=105 Identities=19% Similarity=0.258 Sum_probs=70.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.|++|.|+|+|++|+.+|+.|..+|.+|+ +.|. +.+...... +..++.++++ .
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~-~~d~----------~~~~~~~~~------------~~~~~l~ell-~ 197 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATIT-AYDA----------YPNKDLDFL------------TYKDSVKEAI-K 197 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEeC----------ChhHhhhhh------------hccCCHHHHH-h
Confidence 36899999999999999999999999999998 4452 111111100 0111134555 4
Q ss_pred CceEEeeCCccC-----cccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 134 PCDILIPAAIED-----QITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~~-----~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
++|+++.|.+.. .++.+....++ ..+++..+-+++ . ....+.|++.-+.
T Consensus 198 ~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~ 254 (330)
T PRK12480 198 DADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL 254 (330)
T ss_pred cCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee
Confidence 899999888753 45555555663 559999999997 3 4445777766553
No 77
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.63 E-value=0.00051 Score=63.59 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++.|++|.|+|+|++|+.+|++|..+|++|++. |..+ .+.. ....+ .++++ ..
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~-~~~~---~~~~---------------------~~~~~-l~ell-~~ 197 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIG-QLPG---RPAR---------------------PDRLP-LDELL-PQ 197 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CCCC---Cccc---------------------ccccC-HHHHH-Hh
Confidence 689999999999999999999999999999844 4321 0100 00112 45666 48
Q ss_pred ceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHH-HHHHHHHCCCe
Q psy14499 135 CDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGII 182 (262)
Q Consensus 135 ~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~e-a~~~l~~rgi~ 182 (262)
+|+++-+.+. +.++.+...+++ .-+++.-+-+++ ..+ ..+.|++.-|.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8999977653 677788888885 569999999997 433 45777766554
No 78
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.63 E-value=0.00018 Score=64.55 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=68.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGF-GNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|+|+|+ |.+|+.+++.+.+ .+.++++++|++. +..... .. + +....++.++++. ++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~----------~~~~~~-~~------~-~i~~~~dl~~ll~-~~D 62 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG----------SPLVGQ-GA------L-GVAITDDLEAVLA-DAD 62 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------cccccc-CC------C-CccccCCHHHhcc-CCC
Confidence 58999998 9999999999886 5799999999532 111111 11 1 1112232445554 899
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHHH----HHCCCeEeccccccc
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDIL----RDKGIILAPDVITNA 191 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~l----~~rgi~~iPD~~aN~ 191 (262)
++|+++.++.. .+++... +..+|++ ...++++..+.| ++.++.+.|.|-...
T Consensus 63 vVid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~ 121 (257)
T PRK00048 63 VLIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSIGV 121 (257)
T ss_pred EEEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchHHH
Confidence 99999977664 4444333 5567766 344555433333 335677888876533
No 79
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.62 E-value=0.0047 Score=59.31 Aligned_cols=101 Identities=14% Similarity=0.221 Sum_probs=67.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++.+++|+|+|.|.+|+.+++.|...|+.-+.+++ .++++..++.++.+. ....+++..+.+ .+
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~----------r~~~ra~~la~~~g~-----~~~~~~~~~~~l-~~ 242 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVAN----------RTLERAEELAEEFGG-----EAIPLDELPEAL-AE 242 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEe----------CCHHHHHHHHHHcCC-----cEeeHHHHHHHh-cc
Confidence 57899999999999999999999999985444777 456666555554331 011111112223 47
Q ss_pred ceEEeeCCcc--Ccccccchhcc------CceEEEecCCCC-CCHH
Q psy14499 135 CDILIPAAIE--DQITINNANNV------TAKIILEGANGP-TTTE 171 (262)
Q Consensus 135 ~DIlipaa~~--~~it~e~a~~~------~~kiIve~AN~p-~t~e 171 (262)
+||+|.|+.. .+++.+..... +-.++++.|+.. +.|+
T Consensus 243 aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 243 ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 9999999863 56777666543 346899999743 4444
No 80
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=97.62 E-value=0.0028 Score=62.67 Aligned_cols=133 Identities=13% Similarity=0.121 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHH------hCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 37 TGRGVFIIGSKIASK------INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~------~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
-++|+..+++..++. .+.++++++++|.|.|.+|++++..|.+.|++|+ ++++ +.++..++.+
T Consensus 352 D~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR----------~~e~a~~la~ 420 (529)
T PLN02520 352 DYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANR----------TYERAKELAD 420 (529)
T ss_pred cHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcC----------CHHHHHHHHH
Confidence 367888888754422 2457889999999999999999999999999876 7773 4555555544
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCccCcccc---cch--hcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITI---NNA--NNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~---e~a--~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
+.+. ....+++..+.+..++||+|.|++-+.-.. .+. ..+ ...+|++..-+|.....-+.-+++|..++
T Consensus 421 ~l~~-----~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 495 (529)
T PLN02520 421 AVGG-----QALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLREAEESGAIIV 495 (529)
T ss_pred HhCC-----ceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHHHHHHHHCCCeEe
Confidence 3210 011111111223346899999887655321 111 112 35689999999974334444577888776
Q ss_pred c
Q psy14499 185 P 185 (262)
Q Consensus 185 P 185 (262)
.
T Consensus 496 ~ 496 (529)
T PLN02520 496 S 496 (529)
T ss_pred C
Confidence 3
No 81
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.62 E-value=0.0045 Score=59.42 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=68.9
Q ss_pred HHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC
Q psy14499 46 SKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN 125 (262)
Q Consensus 46 ~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~ 125 (262)
+.+.+.++ ++.+++|+|+|+|.+|+.+++.|...|+.-|.+++ -+.++..++.++.+. .....+
T Consensus 169 ~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~----------rs~~ra~~la~~~g~-----~~i~~~ 232 (417)
T TIGR01035 169 ELAERIFG-SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIAN----------RTYERAEDLAKELGG-----EAVKFE 232 (417)
T ss_pred HHHHHHhC-CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEe----------CCHHHHHHHHHHcCC-----eEeeHH
Confidence 33334433 47899999999999999999999999944343777 355555555444321 001111
Q ss_pred CCccccccCceEEeeCCc--cCcccccchhcc-----CceEEEecCCCC-CCHHH
Q psy14499 126 DSKEFWSIPCDILIPAAI--EDQITINNANNV-----TAKIILEGANGP-TTTEA 172 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~--~~~it~e~a~~~-----~~kiIve~AN~p-~t~ea 172 (262)
+..+.+ .++||+|.|+. ..+++.+..... +..++++.++.. +.|+.
T Consensus 233 ~l~~~l-~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 233 DLEEYL-AEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred HHHHHH-hhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 122233 48999999975 466777666553 233899999532 45554
No 82
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.61 E-value=0.0029 Score=57.33 Aligned_cols=170 Identities=12% Similarity=0.151 Sum_probs=95.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEe
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 139 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIli 139 (262)
+|.|+|+|++|+.+++.|.+.|.+|+ +.| .+++++.+..+. + ....++..++. .+||+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~d----------r~~~~~~~~~~~-g-------~~~~~~~~~~~-~~aDivi 60 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTT----------IGPEVADELLAA-G-------AVTAETARQVT-EQADVIF 60 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHC-C-------CcccCCHHHHH-hcCCEEE
Confidence 58899999999999999999999987 666 455665554432 2 11112133444 5899999
Q ss_pred eCCccCcccccc-------hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEecccccc-------------chhh--
Q psy14499 140 PAAIEDQITINN-------ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITN-------------AGGV-- 194 (262)
Q Consensus 140 paa~~~~it~e~-------a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN-------------~GGv-- 194 (262)
.|-+......+. ...+ ..++|++..+... +.+..+.++++|+.++.-.+.- .||-
T Consensus 61 ~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~ 140 (291)
T TIGR01505 61 TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQA 140 (291)
T ss_pred EecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHH
Confidence 997754222211 1222 3568887665543 2345677888998877533320 0110
Q ss_pred -HHHHHHHHhhhcC-CCC----CHHHH----HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14499 195 -IVSYFEWVQNLSN-LLW----TEQEI----NLRLNNIICNAFDAIWELANTKKVSLRTAAFIIG 249 (262)
Q Consensus 195 -i~s~~E~~~~~~~-~~~----~~~~v----~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a 249 (262)
.-...++++.... ..+ ...+. ...+.......+.+.+..+++.|+++.+....+.
T Consensus 141 ~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~ 205 (291)
T TIGR01505 141 VFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR 205 (291)
T ss_pred HHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 0011112222111 110 11111 2222223334478888899999999988776654
No 83
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.59 E-value=0.00086 Score=56.65 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=69.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
...++|++.++. +++.+..++++++|+|+|.|. +|..++++|.+.|++|+ +++++ .++
T Consensus 22 ~~~p~~~~a~v~----l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~-v~~r~----------~~~------ 80 (168)
T cd01080 22 GFIPCTPAGILE----LLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT-VCHSK----------TKN------ 80 (168)
T ss_pred CccCChHHHHHH----HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE-EEECC----------chh------
Confidence 456777777655 455556789999999999998 59999999999999866 77642 111
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCceEEEecCCCC
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~kiIve~AN~p 167 (262)
..+.+ .++||+|-|+.. ++++.+..+. ..+|++.|..+
T Consensus 81 ----------------l~~~l-~~aDiVIsat~~~~ii~~~~~~~--~~viIDla~pr 119 (168)
T cd01080 81 ----------------LKEHT-KQADIVIVAVGKPGLVKGDMVKP--GAVVIDVGINR 119 (168)
T ss_pred ----------------HHHHH-hhCCEEEEcCCCCceecHHHccC--CeEEEEccCCC
Confidence 11223 478999988864 6788776543 46888888755
No 84
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.57 E-value=0.0016 Score=62.38 Aligned_cols=106 Identities=14% Similarity=0.276 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.+|.|++|.|+|+|++|+.+|+.+..+|.+|+ ..|... . ...+ +.+...+.++++
T Consensus 146 ~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~-~~d~~~----------~------~~~~------~~~~~~~l~ell- 201 (409)
T PRK11790 146 SFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVY-FYDIED----------K------LPLG------NARQVGSLEELL- 201 (409)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EECCCc----------c------cccC------CceecCCHHHHH-
Confidence 346899999999999999999999999999998 444210 0 0000 111222255666
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHH-HHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~e-a~~~l~~rgi~ 182 (262)
..||+++-+.+. +.++.+....++ ..+++.-+-+++ ..+ ..+.|++..+.
T Consensus 202 ~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 259 (409)
T PRK11790 202 AQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLA 259 (409)
T ss_pred hhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence 479999877653 567777777774 668999999987 433 45777776664
No 85
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.55 E-value=0.00052 Score=62.73 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=99.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c-CceE
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I-PCDI 137 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~-~~DI 137 (262)
+|.++|+|++|+.+++.|.+.|..|+ +.| .+.+++.+..+. | .+..++++++.+ . .+|+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~d----------r~~~~~~~~~~~-g-------~~~~~s~~~~~~~~~~adv 62 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVV-GYD----------VNQEAVDVAGKL-G-------ITARHSLEELVSKLEAPRT 62 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEE----------CCHHHHHHHHHC-C-------CeecCCHHHHHHhCCCCCE
Confidence 79999999999999999999999987 777 456665555432 2 222222445543 2 2799
Q ss_pred EeeCCccCcccccc----hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccc------------cchhhHHHH
Q psy14499 138 LIPAAIEDQITINN----ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT------------NAGGVIVSY 198 (262)
Q Consensus 138 lipaa~~~~it~e~----a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~a------------N~GGvi~s~ 198 (262)
++-|.+.+....+. ...+ +-++|++.++... +.+..+.++++|+.++--.+. -.||=- ..
T Consensus 63 Vi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~-~~ 141 (299)
T PRK12490 63 IWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDK-EI 141 (299)
T ss_pred EEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCH-HH
Confidence 99887765333222 2223 3468888877643 455667888999988743322 112211 11
Q ss_pred HH----HHhhhcC----CCC----C----HHHHHHHHHHHHHHHHHHHHHHHhhcC--CCHHHHHHHHH
Q psy14499 199 FE----WVQNLSN----LLW----T----EQEINLRLNNIICNAFDAIWELANTKK--VSLRTAAFIIG 249 (262)
Q Consensus 199 ~E----~~~~~~~----~~~----~----~~~v~~~l~~~~~~~~~~v~~~a~~~~--~~~r~aa~~~a 249 (262)
++ +++.... ..+ . ..-+...+...+-..+.+.+..+++.+ +++.+...++.
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 142 YDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred HHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHc
Confidence 12 2222211 111 0 112333444455566778888888888 88777665543
No 86
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.51 E-value=0.0009 Score=61.13 Aligned_cols=95 Identities=16% Similarity=0.306 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..|+.. ++++.+.+++|++|+|+|.|+ ||+-++.+|.+.|++|+ +++++. -|
T Consensus 137 ~~PcTp~ai~~----ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~t-------~~---------- 194 (286)
T PRK14175 137 FVPCTPLGIME----ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSRS-------KD---------- 194 (286)
T ss_pred CCCCcHHHHHH----HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCc-------hh----------
Confidence 45788888754 556778999999999999988 99999999999999988 777531 01
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCceEEEecCCCC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~kiIve~AN~p 167 (262)
..+.. .++||+|-|... +.++++..+ ...+|++.+.++
T Consensus 195 ---------------l~~~~-~~ADIVIsAvg~p~~i~~~~vk--~gavVIDvGi~~ 233 (286)
T PRK14175 195 ---------------MASYL-KDADVIVSAVGKPGLVTKDVVK--EGAVIIDVGNTP 233 (286)
T ss_pred ---------------HHHHH-hhCCEEEECCCCCcccCHHHcC--CCcEEEEcCCCc
Confidence 11122 478999988764 578877653 246888887766
No 87
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.49 E-value=0.0018 Score=63.88 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|+ . .+.+.. ... +.+..+ .++++
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~-~~d~-------~-~~~~~~----~~~-------g~~~~~-l~ell- 192 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVI-AYDP-------Y-ISPERA----AQL-------GVELVS-LDELL- 192 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EECC-------C-CChhHH----Hhc-------CCEEEc-HHHHH-
Confidence 346899999999999999999999999999988 4442 1 122211 111 122233 55666
Q ss_pred cCceEEeeCCcc-----Ccccccchhcc-CceEEEecCCCCC-CHH-HHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNV-TAKIILEGANGPT-TTE-ADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~-~~kiIve~AN~p~-t~e-a~~~l~~rgi~ 182 (262)
..||+++-|.+. ++++.+....+ +..+++.-+-+++ ..+ ..+.|++.-|.
T Consensus 193 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 193 ARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred hhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence 489999988764 56666666666 3558888888887 444 45777766553
No 88
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.00063 Score=60.53 Aligned_cols=169 Identities=20% Similarity=0.285 Sum_probs=105.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc---cccC-
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF---WSIP- 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i---l~~~- 134 (262)
+++-++|+|.+|.++++.|.+.|..|| +.| +|+.++.+++... ++..++.+++ |..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV-~yD----------~n~~av~~~~~~g--------a~~a~sl~el~~~L~~pr 61 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVV-GYD----------VNQTAVEELKDEG--------ATGAASLDELVAKLSAPR 61 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEE-EEc----------CCHHHHHHHHhcC--------CccccCHHHHHHhcCCCc
Confidence 356789999999999999999999999 777 7888887777643 1111112222 2111
Q ss_pred -ceEEeeCC-ccCcccccchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhHHHHH----------
Q psy14499 135 -CDILIPAA-IEDQITINNANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVIVSYF---------- 199 (262)
Q Consensus 135 -~DIlipaa-~~~~it~e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~---------- 199 (262)
.=+.+|++ +++.+-.+-++.+ ...+|++|.|... +..-.+.|+++||.++ =.-.|||+--.-.
T Consensus 62 ~vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~fl--D~GTSGG~~G~~~G~~lMiGG~~ 139 (300)
T COG1023 62 IVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL--DVGTSGGVWGAERGYCLMIGGDE 139 (300)
T ss_pred EEEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEE--eccCCCCchhhhcCceEEecCcH
Confidence 23556776 5555555566666 4569999999988 4444578999999998 5566788732110
Q ss_pred ---HHHhh--------hcCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHhh--cCCCHHHHHHHH
Q psy14499 200 ---EWVQN--------LSNLLWT--------EQEINLRLNNIICNAFDAIWELANT--KKVSLRTAAFII 248 (262)
Q Consensus 200 ---E~~~~--------~~~~~~~--------~~~v~~~l~~~~~~~~~~v~~~a~~--~~~~~r~aa~~~ 248 (262)
|-+.. ..++-+. -.-|...+|+-|-+++.+=++.-++ ++.++.+.|-+.
T Consensus 140 ~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW 209 (300)
T COG1023 140 EAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW 209 (300)
T ss_pred HHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 00000 0000000 1124556677777777776666654 567787777553
No 89
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.00077 Score=62.39 Aligned_cols=96 Identities=22% Similarity=0.320 Sum_probs=61.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCc---------------
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG--------------- 121 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g--~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~--------------- 121 (262)
.||+|-|||.+|+.+++.+.+.+ ..||+|.|. .|++-+..+.+..+....|++.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~---------t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I 72 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL---------TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGI 72 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC---------CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceE
Confidence 58999999999999999998864 999999983 3555444433322212223211
Q ss_pred eecC--CCccc--cccCceEEeeCCccCcccccchhcc----CceEEEecC
Q psy14499 122 EKIN--DSKEF--WSIPCDILIPAAIEDQITINNANNV----TAKIILEGA 164 (262)
Q Consensus 122 ~~~~--~~~~i--l~~~~DIlipaa~~~~it~e~a~~~----~~kiIve~A 164 (262)
+... +++.+ -+...||+++|++... +.+++.++ .+|-|+-+|
T Consensus 73 ~v~~~~~p~~l~w~d~gvdiVve~Tg~f~-~~e~~~~hl~agGaKkV~isa 122 (335)
T COG0057 73 KVLAERDPANLPWADLGVDIVVECTGKFT-GREKAEKHLKAGGAKKVLISA 122 (335)
T ss_pred EEEecCChHHCCccccCccEEEECCCCcc-chhhHHHHHHhcCCCEEEEcC
Confidence 1111 12232 2467899999997655 88888853 256554444
No 90
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.47 E-value=0.00055 Score=66.72 Aligned_cols=176 Identities=15% Similarity=0.121 Sum_probs=103.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc--cCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--IPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~--~~~D 136 (262)
.+|.|+|.|++|.++|+.|.+.|++|. +.| .+.++..++.+....- ++ ..+..++++++.+ .++|
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~-v~d----------r~~~~~~~l~~~~~~~-g~-~i~~~~s~~e~v~~l~~~d 68 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKIS-VYN----------RTYEKTEEFVKKAKEG-NT-RVKGYHTLEELVNSLKKPR 68 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEE-EEe----------CCHHHHHHHHHhhhhc-CC-cceecCCHHHHHhcCCCCC
Confidence 379999999999999999999999977 777 5777766665431110 11 0111222445543 2689
Q ss_pred EEeeCCccCccccc----chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccc------------cchhhHHH
Q psy14499 137 ILIPAAIEDQITIN----NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT------------NAGGVIVS 197 (262)
Q Consensus 137 Ilipaa~~~~it~e----~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~a------------N~GGvi~s 197 (262)
+++-|-+......+ ..+.+ ..++|+++.|... |.+..+.++++||.++=-.+. -.||=-.
T Consensus 69 ~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~- 147 (470)
T PTZ00142 69 KVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKE- 147 (470)
T ss_pred EEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHH-
Confidence 77777443333322 33334 4679999999854 566678889999999733332 1223211
Q ss_pred HHHHHhh----hcC-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHH
Q psy14499 198 YFEWVQN----LSN-------LLW--------TEQEINLRLNNIICNAFDAIWELAN-TKKVSLRTAAFII 248 (262)
Q Consensus 198 ~~E~~~~----~~~-------~~~--------~~~~v~~~l~~~~~~~~~~v~~~a~-~~~~~~r~aa~~~ 248 (262)
.++.++. ... ..| --.-|...++.-+-..+.+.++.++ +.++++.+.+.+.
T Consensus 148 a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~ 218 (470)
T PTZ00142 148 AYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218 (470)
T ss_pred HHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 1222221 100 011 0123445566666677777888886 5788877765443
No 91
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.44 E-value=0.001 Score=61.36 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCcee
Q psy14499 44 IGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123 (262)
Q Consensus 44 ~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~ 123 (262)
+++.+.+.++. +.+++|+|+|+|.+|+.+++.|...|+..|.++| .++++..++.++.+. ....
T Consensus 165 Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~----------r~~~ra~~la~~~g~-----~~~~ 228 (311)
T cd05213 165 AVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIAN----------RTYERAEELAKELGG-----NAVP 228 (311)
T ss_pred HHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEe----------CCHHHHHHHHHHcCC-----eEEe
Confidence 34444444443 7899999999999999999999998876666888 567776666665432 0111
Q ss_pred cCCCccccccCceEEeeCCccCcccccchhc----c--CceEEEecCCCC-CCHH
Q psy14499 124 INDSKEFWSIPCDILIPAAIEDQITINNANN----V--TAKIILEGANGP-TTTE 171 (262)
Q Consensus 124 ~~~~~~il~~~~DIlipaa~~~~it~e~a~~----~--~~kiIve~AN~p-~t~e 171 (262)
+++..+.+ .++||+|.|+..... .+.... . +-++|++-++.+ +.|+
T Consensus 229 ~~~~~~~l-~~aDvVi~at~~~~~-~~~~~~~~~~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 229 LDELLELL-NEADVVISATGAPHY-AKIVERAMKKRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred HHHHHHHH-hcCCEEEECCCCCch-HHHHHHHHhhCCCCCeEEEEeCCCCCCchh
Confidence 11112223 479999999985543 111111 1 345888888643 3444
No 92
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.44 E-value=0.00042 Score=52.08 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=59.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC---CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC-CCccccccCc
Q psy14499 60 KISIQGFGNVGSVAANLFFKAG---AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN-DSKEFWSIPC 135 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g---~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~-~~~~il~~~~ 135 (262)
||.|+|+|++|.++++-|.+.| .+|.-+++ -+++++.++.++.+ ..... +..++.+ ++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~----------r~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~a 62 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSS----------RSPEKAAELAKEYG-------VQATADDNEEAAQ-EA 62 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEE----------SSHHHHHHHHHHCT-------TEEESEEHHHHHH-HT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeecc----------CcHHHHHHHHHhhc-------cccccCChHHhhc-cC
Confidence 6889999999999999999999 88875546 57888888877654 11111 1345554 89
Q ss_pred eEEeeCCccCcccccchhc----cCceEEEecCCC
Q psy14499 136 DILIPAAIEDQITINNANN----VTAKIILEGANG 166 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~----~~~kiIve~AN~ 166 (262)
||++.|-.+..+.+ .+.+ .+.++|+.-+|+
T Consensus 63 dvvilav~p~~~~~-v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 63 DVVILAVKPQQLPE-VLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp SEEEE-S-GGGHHH-HHHHHHHHHTTSEEEEESTT
T ss_pred CEEEEEECHHHHHH-HHHHHhhccCCCEEEEeCCC
Confidence 99999987655532 2222 256677766553
No 93
>PLN00203 glutamyl-tRNA reductase
Probab=97.43 E-value=0.013 Score=57.92 Aligned_cols=112 Identities=5% Similarity=0.091 Sum_probs=73.3
Q ss_pred HHHHHHHHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCc
Q psy14499 43 IIGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG 121 (262)
Q Consensus 43 ~~~~~~~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~ 121 (262)
.+++.+.+.++. ++.+++|+|+|.|.+|+.+++.|...|++-|.|++ -+.++...+.++.+... . ..
T Consensus 250 ~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~n----------Rs~era~~La~~~~g~~-i-~~ 317 (519)
T PLN00203 250 AAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVN----------RSEERVAALREEFPDVE-I-IY 317 (519)
T ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEe----------CCHHHHHHHHHHhCCCc-e-Ee
Confidence 344555556664 68999999999999999999999999975444766 35666666655432110 0 00
Q ss_pred eecCCCccccccCceEEeeCCc--cCcccccchhccC--------ceEEEecCCCC
Q psy14499 122 EKINDSKEFWSIPCDILIPAAI--EDQITINNANNVT--------AKIILEGANGP 167 (262)
Q Consensus 122 ~~~~~~~~il~~~~DIlipaa~--~~~it~e~a~~~~--------~kiIve~AN~p 167 (262)
..+++..+.+ .++||+|-|+. ..+++.+....+. -+++++-|...
T Consensus 318 ~~~~dl~~al-~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 318 KPLDEMLACA-AEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred ecHhhHHHHH-hcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 1111112233 58999999974 4677887776652 24899888764
No 94
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.41 E-value=0.00089 Score=61.16 Aligned_cols=105 Identities=14% Similarity=0.212 Sum_probs=71.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEe
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 139 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIli 139 (262)
+|.|+|.|++|..+++.|.+.|.+|+ +.| .+.+++.++.+.. ....+++.+.. .+||++|
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~-v~d----------~~~~~~~~~~~~g--------~~~~~s~~~~~-~~aDvVi 62 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQ-VFD----------VNPQAVDALVDKG--------ATPAASPAQAA-AGAEFVI 62 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHcC--------CcccCCHHHHH-hcCCEEE
Confidence 79999999999999999999999876 667 4666665554431 11122133444 5899999
Q ss_pred eCCccCccccc-------chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEe
Q psy14499 140 PAAIEDQITIN-------NANNV-TAKIILEGANGPT--TTEADDILRDKGIILA 184 (262)
Q Consensus 140 paa~~~~it~e-------~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~i 184 (262)
-|-+.+....+ ..+.+ +.++|++....+. +.+..+.+.++|+.++
T Consensus 63 ~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 63 TMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred EecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 99876532111 12223 4568888777764 4666788899998877
No 95
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.38 E-value=0.0038 Score=56.79 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhCC--CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 38 GRGVFIIGSKIASKINL--NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~--~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
++|...+++ ..+. ++++++++|+|.|.++++++..|.+.|++-+.|+++ +.++..++.++.+..
T Consensus 107 ~~G~~~~l~----~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR----------t~~ka~~La~~~~~~ 172 (282)
T TIGR01809 107 WDGIAGALA----NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR----------NPDKLSRLVDLGVQV 172 (282)
T ss_pred HHHHHHHHH----hhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC----------CHHHHHHHHHHhhhc
Confidence 566666664 3452 578999999999999999999999999866668773 455555554432211
Q ss_pred cCCCCceecCCCc---cccccCceEEeeCCccCc-ccccchh---------cc-CceEEEecCCCCCCHHHHHHHHHCCC
Q psy14499 116 KDFNEGEKINDSK---EFWSIPCDILIPAAIEDQ-ITINNAN---------NV-TAKIILEGANGPTTTEADDILRDKGI 181 (262)
Q Consensus 116 ~~~~~~~~~~~~~---~il~~~~DIlipaa~~~~-it~e~a~---------~~-~~kiIve~AN~p~t~ea~~~l~~rgi 181 (262)
. ....++..+ ..+ .++|++|-|++.+. ++.+... ++ +..++++....|......+.-+++|.
T Consensus 173 ~---~~~~~~~~~~~~~~~-~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~ 248 (282)
T TIGR01809 173 G---VITRLEGDSGGLAIE-KAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLVAIVSAAGW 248 (282)
T ss_pred C---cceeccchhhhhhcc-cCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHHHHHHHCCC
Confidence 0 111121011 222 47999999987543 3333221 11 24588999998874344455578888
Q ss_pred eEe
Q psy14499 182 ILA 184 (262)
Q Consensus 182 ~~i 184 (262)
.++
T Consensus 249 ~~~ 251 (282)
T TIGR01809 249 RVI 251 (282)
T ss_pred EEE
Confidence 776
No 96
>PLN02306 hydroxypyruvate reductase
Probab=97.34 E-value=0.0045 Score=58.89 Aligned_cols=119 Identities=13% Similarity=0.219 Sum_probs=74.1
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC----CccCCC-CceecCC
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFF-KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR----SIKDFN-EGEKIND 126 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g----~~~~~~-~~~~~~~ 126 (262)
|.++.|++|.|+|+|++|+.+|+.|. .+|++|+ ..|... + ..+....+..+ .....+ +.+...+
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~-~~d~~~--------~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 229 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ--------S-TRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEE-EECCCC--------c-hhhhhhhhhhcccccccccccccccccCC
Confidence 34689999999999999999999985 8999988 445321 0 11111000110 000000 0111222
Q ss_pred CccccccCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 127 SKEFWSIPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
.++++ ..+||++-+.+. +.|+.+....++ ..+++.-+-+++ . +...+.|++.-+.
T Consensus 230 L~ell-~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~ 292 (386)
T PLN02306 230 MEEVL-READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMF 292 (386)
T ss_pred HHHHH-hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCee
Confidence 45666 479999987553 577777777785 669999999997 3 3345777765553
No 97
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.33 E-value=0.001 Score=61.51 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=70.4
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.++||.|+|+|++|+.+|+.|..+|++|.++ |....- ..+.+ .+. ...+.++++ .
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~-~~~~~~--~~~~~---------------~~~---~~~~l~e~l-~ 189 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCW-SRSRKS--WPGVQ---------------SFA---GREELSAFL-S 189 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-eCCCCC--CCCce---------------eec---ccccHHHHH-h
Confidence 3689999999999999999999999999999844 421100 00110 000 011134455 5
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCe
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~ 182 (262)
+||+++-|-+. +.++.+....++ ..+++.-+-+++ .. +..+.|++.-+.
T Consensus 190 ~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 190 QTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred cCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCee
Confidence 89999988764 445555566664 569999999997 33 345777776554
No 98
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.032 Score=51.03 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHhC--CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 38 GRGVFIIGSKIASKIN--LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g--~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
++|+..+ ++..+ .+.++++++|.|.|-.+++++..|.+.|++=+.|.+ -+.++..++.+..+..
T Consensus 108 ~~G~~~~----L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~N----------Rt~~ra~~La~~~~~~ 173 (283)
T COG0169 108 GIGFLRA----LKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVN----------RTRERAEELADLFGEL 173 (283)
T ss_pred HHHHHHH----HHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe----------CCHHHHHHHHHHhhhc
Confidence 4555444 44433 466899999999999999999999999964333776 3566655555443322
Q ss_pred cCCCCceecCCCcccccc-CceEEeeCCccCccccc---chh--cc-CceEEEecCCCCC-CHHHHHHHHHCCCeEe
Q psy14499 116 KDFNEGEKINDSKEFWSI-PCDILIPAAIEDQITIN---NAN--NV-TAKIILEGANGPT-TTEADDILRDKGIILA 184 (262)
Q Consensus 116 ~~~~~~~~~~~~~~il~~-~~DIlipaa~~~~it~e---~a~--~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~~i 184 (262)
..+..... ..++-.. ++|++|.|++-+.-..+ +.+ .+ +..++.+-.-.|. ||=. +.-+++|..++
T Consensus 174 ~~~~~~~~---~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL-~~A~~~G~~~i 246 (283)
T COG0169 174 GAAVEAAA---LADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETPLL-REARAQGAKTI 246 (283)
T ss_pred cccccccc---ccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHH-HHHHHcCCeEE
Confidence 11101111 1122222 69999999987655432 122 22 6779999999997 6554 44478887654
No 99
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.32 E-value=0.0097 Score=53.98 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=94.6
Q ss_pred EEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCC
Q psy14499 63 IQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAA 142 (262)
Q Consensus 63 IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa 142 (262)
++|+|++|..+++.|.+.|.+|+ +.| .+.+++.++.+. | ....+++.+.. .++|+++-|-
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~-g-------~~~~~s~~~~~-~~advVil~v 60 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVR-VFD----------LFPDAVEEAVAA-G-------AQAAASPAEAA-EGADRVITML 60 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEE-EEe----------CCHHHHHHHHHc-C-------CeecCCHHHHH-hcCCEEEEeC
Confidence 47999999999999999999876 666 456665555442 1 12222233444 4799999887
Q ss_pred ccCcccc-------cchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccc-------------cchhhHHHH-
Q psy14499 143 IEDQITI-------NNANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT-------------NAGGVIVSY- 198 (262)
Q Consensus 143 ~~~~it~-------e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~a-------------N~GGvi~s~- 198 (262)
+...... +....+ +-++|++...... +.+..+.++++|+.++--.+. -.||--..+
T Consensus 61 p~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~ 140 (288)
T TIGR01692 61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFA 140 (288)
T ss_pred CChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHH
Confidence 7533211 222233 3467777775443 344557778899998864333 123322111
Q ss_pred --HHHHhhhcC-CCC----CHHHHHHHHHHH----HHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14499 199 --FEWVQNLSN-LLW----TEQEINLRLNNI----ICNAFDAIWELANTKKVSLRTAAFIIG 249 (262)
Q Consensus 199 --~E~~~~~~~-~~~----~~~~v~~~l~~~----~~~~~~~v~~~a~~~~~~~r~aa~~~a 249 (262)
..+++.... ..+ ...+....+.+. .-..+.+.+..+++.|+++.+....+.
T Consensus 141 ~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~ 202 (288)
T TIGR01692 141 AAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIAN 202 (288)
T ss_pred HHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 122221111 111 122333322222 233577888899999999887665544
No 100
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.28 E-value=0.026 Score=52.33 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=27.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEE
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIV 85 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv 85 (262)
|++++|+|+|+|++|+++++.|.+.|.+++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Vi 30 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVI 30 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEE
Confidence 578999999999999999999999998876
No 101
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.28 E-value=0.0016 Score=59.10 Aligned_cols=109 Identities=18% Similarity=0.284 Sum_probs=69.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|.+|+.+++.|.+.|.+|+ +.| .+.+.+.+..+. + ....++.+++. .+||++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d----------~~~~~~~~~~~~-g-------~~~~~~~~e~~-~~~d~v 62 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYD----------RNPEAVAEVIAA-G-------AETASTAKAVA-EQCDVI 62 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHC-C-------CeecCCHHHHH-hcCCEE
Confidence 589999999999999999999999887 656 355555444332 1 12222234444 489999
Q ss_pred eeCCccCccccc-------chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccc
Q psy14499 139 IPAAIEDQITIN-------NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDV 187 (262)
Q Consensus 139 ipaa~~~~it~e-------~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~ 187 (262)
+.|.+......+ ..+.+ .-++|++...... +.+..+.+.++|+.++...
T Consensus 63 i~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~p 121 (296)
T PRK11559 63 ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAP 121 (296)
T ss_pred EEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcC
Confidence 999875332221 12333 3568887766543 2345667788898776433
No 102
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.28 E-value=0.001 Score=60.09 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=63.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
.+||.|+|||++|+.+++.|... ++.+++|.|+ ++++..+.... ...+++.++++..+
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~----------~~~~~~~~~~~---------~~~~~~l~~ll~~~ 62 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN----------AADLPPALAGR---------VALLDGLPGLLAWR 62 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC----------CHHHHHHhhcc---------CcccCCHHHHhhcC
Confidence 57999999999999999988653 4788888773 34333333221 22344456777789
Q ss_pred ceEEeeCCccCcccccchhcc--CceEEEecCCCCCCHHHHHHH
Q psy14499 135 CDILIPAAIEDQITINNANNV--TAKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~ea~~~l 176 (262)
+|+++|||....+-+--.+-+ .+.+|+-....-..++..+.|
T Consensus 63 ~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l 106 (267)
T PRK13301 63 PDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARL 106 (267)
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHH
Confidence 999999998776643222222 455666554444444444333
No 103
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.27 E-value=0.019 Score=52.31 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|...+++ ..+.++++++++|.|.|.+|++++..|.+.|++-|.|.+++ ++ ..+++.+..++... .
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~-----~~--~~~~a~~l~~~l~~--~ 176 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK-----DD--FYERAEQTAEKIKQ--E 176 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC-----ch--HHHHHHHHHHHHhh--c
Confidence 556555554 44567889999999999999999999999999744477631 00 01333333222110 0
Q ss_pred CCC--ce--ecCCCccccc--cCceEEeeCCccCcccc---cch---hcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 118 FNE--GE--KINDSKEFWS--IPCDILIPAAIEDQITI---NNA---NNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 118 ~~~--~~--~~~~~~~il~--~~~DIlipaa~~~~it~---e~a---~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
++. .. .+++.+++.. ..+|++|-|++-+.-.. .+. ..+ +..+|++....|.....-+.-+++|..++
T Consensus 177 ~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 256 (289)
T PRK12548 177 VPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAEAAGCKTV 256 (289)
T ss_pred CCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHHHCCCeee
Confidence 111 11 1111112211 36799999998655321 112 223 34589999999974333445578898776
No 104
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.25 E-value=0.031 Score=53.70 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=67.1
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCC
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDS 127 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~ 127 (262)
.++..-.++.+++|+|+|.|.+|+.+++.|.+.|+.-+.|+.+ +.++...+.++.+.. ....+++.
T Consensus 171 la~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nR----------t~~ra~~La~~~~~~----~~~~~~~l 236 (414)
T PRK13940 171 LAKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANR----------TIEKAQKITSAFRNA----SAHYLSEL 236 (414)
T ss_pred HHHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECC----------CHHHHHHHHHHhcCC----eEecHHHH
Confidence 3333334588999999999999999999999999866668874 345555555543210 11112211
Q ss_pred ccccccCceEEeeCCcc--CcccccchhccCceEEEecCCCC
Q psy14499 128 KEFWSIPCDILIPAAIE--DQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 128 ~~il~~~~DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p 167 (262)
.+.+ .++||+|-|+.. .+++.+.... +-.++++-|...
T Consensus 237 ~~~l-~~aDiVI~aT~a~~~vi~~~~~~~-~~~~~iDLavPR 276 (414)
T PRK13940 237 PQLI-KKADIIIAAVNVLEYIVTCKYVGD-KPRVFIDISIPQ 276 (414)
T ss_pred HHHh-ccCCEEEECcCCCCeeECHHHhCC-CCeEEEEeCCCC
Confidence 2233 479999999864 6667655432 345888888754
No 105
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.24 E-value=0.00045 Score=55.76 Aligned_cols=107 Identities=21% Similarity=0.350 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
...||.|+|.|+||.++++.|.+.|+.|++|.. -+.....+..+.. +.....+ ..+++ .++|
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s----------rs~~sa~~a~~~~------~~~~~~~-~~~~~-~~aD 70 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYS----------RSPASAERAAAFI------GAGAILD-LEEIL-RDAD 70 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESS----------CHH-HHHHHHC--------TT------TTGGG-CC-S
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe----------CCccccccccccc------ccccccc-ccccc-ccCC
Confidence 457999999999999999999999999998865 2333333332221 1222233 55565 4899
Q ss_pred EEeeCCccCcccccchhcc-------CceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 137 ILIPAAIEDQITINNANNV-------TAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~-------~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
+++-|.+-+.|.+ .+.++ +-++|+=-+... +-+.-+-++++|..+
T Consensus 71 lv~iavpDdaI~~-va~~La~~~~~~~g~iVvHtSGa~-~~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 71 LVFIAVPDDAIAE-VAEQLAQYGAWRPGQIVVHTSGAL-GSDVLAPARERGAIV 122 (127)
T ss_dssp EEEE-S-CCHHHH-HHHHHHCC--S-TT-EEEES-SS---GGGGHHHHHTT-EE
T ss_pred EEEEEechHHHHH-HHHHHHHhccCCCCcEEEECCCCC-hHHhhhhHHHCCCeE
Confidence 9999988776642 22222 344555444322 223233346666544
No 106
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.22 E-value=0.033 Score=50.96 Aligned_cols=135 Identities=12% Similarity=0.103 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|...+++ ..+.++++++++|.|.|..+++++-.|...|++-+.|.+++- + ..++..++.++.+. .
T Consensus 108 ~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~-----~--~~~ka~~la~~~~~--~ 174 (288)
T PRK12749 108 GTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD-----E--FFDKALAFAQRVNE--N 174 (288)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc-----c--HHHHHHHHHHHhhh--c
Confidence 556555554 457788999999999999999999999999986665877421 0 13344444432211 0
Q ss_pred CCC-ceecCCCcc---cc--ccCceEEeeCCccCcccc--c-c---hhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 118 FNE-GEKINDSKE---FW--SIPCDILIPAAIEDQITI--N-N---ANNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 118 ~~~-~~~~~~~~~---il--~~~~DIlipaa~~~~it~--e-~---a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
++. ....+ .++ +. ..++|++|.|++-+.-.. + . ...+ ...+|++...+|.....-+.-+++|..++
T Consensus 175 ~~~~~~~~~-~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 253 (288)
T PRK12749 175 TDCVVTVTD-LADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTI 253 (288)
T ss_pred cCceEEEec-hhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCHHHHHHHHCCCeEE
Confidence 100 11111 111 11 137899999998655321 1 1 1123 34588899999874444455578998886
Q ss_pred cc
Q psy14499 185 PD 186 (262)
Q Consensus 185 PD 186 (262)
+-
T Consensus 254 ~G 255 (288)
T PRK12749 254 DG 255 (288)
T ss_pred CC
Confidence 43
No 107
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.21 E-value=0.027 Score=51.44 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|...+++. .+.++++++++|.|.|.++++++-.|.+.|++-+.|.+ -+.++..++.++.. ..
T Consensus 111 ~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~n----------R~~~ka~~La~~~~--~~ 174 (283)
T PRK14027 111 VSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVAD----------LDTSRAQALADVIN--NA 174 (283)
T ss_pred HHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEc----------CCHHHHHHHHHHHh--hc
Confidence 5666666652 33467789999999999999999999999986666887 35665555544311 01
Q ss_pred CCC--ceecC--CCccccccCceEEeeCCccCccccc--c--hhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 118 FNE--GEKIN--DSKEFWSIPCDILIPAAIEDQITIN--N--ANNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 118 ~~~--~~~~~--~~~~il~~~~DIlipaa~~~~it~e--~--a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
++. ....+ +..+.+ .++|++|.|++-+.-..+ + ...+ ...+|.+....|.....-+.-+++|..++
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 249 (283)
T PRK14027 175 VGREAVVGVDARGIEDVI-AAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAARALGCETL 249 (283)
T ss_pred cCcceEEecCHhHHHHHH-hhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCHHHHHHHHCCCEEE
Confidence 111 01111 001122 368999999986543221 1 1122 35589999999874334455588898776
No 108
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.20 E-value=0.0035 Score=59.30 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-cc-CCCCceecCCCcccccc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IK-DFNEGEKINDSKEFWSI 133 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~-~~~~~~~~~~~~~il~~ 133 (262)
+.+.+|+|+|+|.+|+.+++.|..+|++|+ +.| .+++++.++....+. +. .+..... ..+.+ .
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~-v~d----------~~~~~~~~l~~~~g~~v~~~~~~~~~---l~~~l-~ 229 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVT-ILD----------INIDRLRQLDAEFGGRIHTRYSNAYE---IEDAV-K 229 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEE-EEE----------CCHHHHHHHHHhcCceeEeccCCHHH---HHHHH-c
Confidence 567889999999999999999999999866 777 456665554443322 10 0000000 11223 4
Q ss_pred CceEEeeCCc------cCcccccchhccC-ceEEEe
Q psy14499 134 PCDILIPAAI------EDQITINNANNVT-AKIILE 162 (262)
Q Consensus 134 ~~DIlipaa~------~~~it~e~a~~~~-~kiIve 162 (262)
++||+|.|+. ...++.+....++ ..+|++
T Consensus 230 ~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 230 RADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred cCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 8999999862 3457888887774 346766
No 109
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.19 E-value=0.0013 Score=63.99 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=76.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc--cCceE
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--IPCDI 137 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~--~~~DI 137 (262)
.|.|+|+|++|+++|+.|.+.|++|+ +.| .+.+++.++.++...-. +....++..++.. .++|+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~-v~d----------rt~~~~~~l~~~~~~g~---~~~~~~s~~e~v~~l~~~dv 66 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVS-VYN----------RTPEKTDEFLAEHAKGK---KIVGAYSIEEFVQSLERPRK 66 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEE-EEe----------CCHHHHHHHHhhccCCC---CceecCCHHHHHhhcCCCCE
Confidence 37899999999999999999999977 767 56777766665421100 0111121333332 36898
Q ss_pred EeeCCccCcccccc----hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhh
Q psy14499 138 LIPAAIEDQITINN----ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGV 194 (262)
Q Consensus 138 lipaa~~~~it~e~----a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGv 194 (262)
++-|-+.+....+. .+.+ .-++|+++.|.-. |.+..+.++++|+.++--.+. ||.
T Consensus 67 Iil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVs--GG~ 128 (467)
T TIGR00873 67 IMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVS--GGE 128 (467)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCC--CCH
Confidence 88776654333333 2333 4679999999643 555567789999999854444 554
No 110
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.17 E-value=0.0036 Score=48.60 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=72.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~ 135 (262)
.||+|+|+|..|+...+.+.+. +.++++|+| .|+++..+..++.+ ...+++.+++++ .++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d----------~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCD----------PDPERAEAFAEKYG-------IPVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEEC----------SSHHHHHHHHHHTT-------SEEESSHHHHHHHTTE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEe----------CCHHHHHHHHHHhc-------ccchhHHHHHHHhhcC
Confidence 4899999999999999877765 689999999 67777766655542 224444566775 579
Q ss_pred eEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEe
Q psy14499 136 DILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILA 184 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~i 184 (262)
|+++-|++... +.+.+... +..+++|=.=.....+++++ .+++|+.+.
T Consensus 64 D~V~I~tp~~~-h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 64 DAVIIATPPSS-HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp SEEEEESSGGG-HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred CEEEEecCCcc-hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 99999997633 44444443 45688885443333444433 366776653
No 111
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.11 E-value=0.0022 Score=63.08 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCC----------CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 42 FIIGSKIASKINL----------NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 42 ~~~~~~~~~~~g~----------~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
+.++..+.+++++ ...+.+|+|+|.|.+|..++..+...|++|+ ++| .+++++....+-
T Consensus 139 y~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~D----------~~~~rle~aesl 207 (509)
T PRK09424 139 YRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVR-AFD----------TRPEVAEQVESM 207 (509)
T ss_pred HHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHc
Confidence 4555666665543 2358999999999999999999999999765 778 677776555442
Q ss_pred cCCcc--CCCC--------ceecCCCc------cccc---cCceEEeeCCcc------CcccccchhccC--ceEEEecC
Q psy14499 112 TRSIK--DFNE--------GEKINDSK------EFWS---IPCDILIPAAIE------DQITINNANNVT--AKIILEGA 164 (262)
Q Consensus 112 ~g~~~--~~~~--------~~~~~~~~------~il~---~~~DIlipaa~~------~~it~e~a~~~~--~kiIve~A 164 (262)
..... +..+ .+..+ .+ +.+. .++||+|+|+.. ..++++..+.++ ..+|-=|.
T Consensus 208 GA~~v~i~~~e~~~~~~gya~~~s-~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 208 GAEFLELDFEEEGGSGDGYAKVMS-EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCeEEEeccccccccccchhhhcc-hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 22211 1000 00111 11 1111 369999999973 245777777774 33333222
Q ss_pred ----CCCCCHHHHHHHHHCCCeEe
Q psy14499 165 ----NGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 165 ----N~p~t~ea~~~l~~rgi~~i 184 (262)
|.+++.....++..+||.++
T Consensus 287 ~~GG~~e~t~~~~~v~~~~gVti~ 310 (509)
T PRK09424 287 ENGGNCELTVPGEVVVTDNGVTII 310 (509)
T ss_pred CCCCCcccccCccceEeECCEEEE
Confidence 22344333344344777664
No 112
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.09 E-value=0.002 Score=63.12 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=103.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc---CCccCCCCceecCCCccccc--c
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT---RSIKDFNEGEKINDSKEFWS--I 133 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~---g~~~~~~~~~~~~~~~~il~--~ 133 (262)
.+|.++|+|++|+.+|+.|.+.|++|+ |.| .+.++..++.+.. |. .. ....+++.++.+ .
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~-V~N----------Rt~~k~~~l~~~~~~~Ga-~~---~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPIS-VYN----------RTTSKVDETVERAKKEGN-LP---LYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEE-EEC----------CCHHHHHHHHHhhhhcCC-cc---cccCCCHHHHHhcCC
Confidence 479999999999999999999999987 877 5677766655421 21 00 011122344442 2
Q ss_pred CceEEeeCCccCcccc----cchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccc------------cchhh
Q psy14499 134 PCDILIPAAIEDQITI----NNANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT------------NAGGV 194 (262)
Q Consensus 134 ~~DIlipaa~~~~it~----e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~a------------N~GGv 194 (262)
.+|+++-|=+.+.... ...+.+ ..++|+++.|... |.+..+.++++|+.++=-.+. -.||=
T Consensus 72 ~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~ 151 (493)
T PLN02350 72 KPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGS 151 (493)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCC
Confidence 5899987744332222 223334 5779999999964 667778899999998833222 22332
Q ss_pred HHHHHHHHhh----hcC-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHH
Q psy14499 195 IVSYFEWVQN----LSN-------LLW--------TEQEINLRLNNIICNAFDAIWELANT-KKVSLRTAAFI 247 (262)
Q Consensus 195 i~s~~E~~~~----~~~-------~~~--------~~~~v~~~l~~~~~~~~~~v~~~a~~-~~~~~r~aa~~ 247 (262)
-. .+|-++. ... ..| -..-|...++..+-..+.+.+..+++ .|+++.+...+
T Consensus 152 ~~-a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~v 223 (493)
T PLN02350 152 FE-AYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEV 223 (493)
T ss_pred HH-HHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 11 1222211 110 111 01234455666666777778888887 58887776655
No 113
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=97.09 E-value=0.01 Score=53.82 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
-|+|..+..++..++++|++|++.+|+|+|. |.++..+|+.|.-++.+..=+
T Consensus 145 ~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll 197 (351)
T COG5322 145 HTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELL 197 (351)
T ss_pred cchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEe
Confidence 6899999999999999999999999999998 999999999999887766533
No 114
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.07 E-value=0.0026 Score=59.27 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=68.6
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLF-FKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 131 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L-~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il 131 (262)
+.++.|++|.|+|+|++|+.+|+.| ..+|.+|+ ..|.+. .... ... .+..++.++++
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~-~~d~~~----------~~~~---~~~--------~~~~~~l~ell 198 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVV-AYDPFP----------NAKA---ATY--------VDYKDTIEEAV 198 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEE-EECCCc----------cHhH---Hhh--------ccccCCHHHHH
Confidence 3468999999999999999999999 56899987 445321 1100 000 11111144555
Q ss_pred ccCceEEeeCCccCcccc-----cchhcc-CceEEEecCCCCC--CHHHHHHHHHCCC
Q psy14499 132 SIPCDILIPAAIEDQITI-----NNANNV-TAKIILEGANGPT--TTEADDILRDKGI 181 (262)
Q Consensus 132 ~~~~DIlipaa~~~~it~-----e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi 181 (262)
.++|+++-|.+....|. +....+ +..+++..+-+.+ +.+..+.|++..|
T Consensus 199 -~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i 255 (332)
T PRK08605 199 -EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLI 255 (332)
T ss_pred -HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCe
Confidence 48999999887654443 334444 3559999999987 4445577766555
No 115
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=97.05 E-value=0.0068 Score=50.16 Aligned_cols=31 Identities=32% Similarity=0.685 Sum_probs=27.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D 89 (262)
++|+|.|||.+|+.+++.+.+ .+..++++.|
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d 32 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAIND 32 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeec
Confidence 479999999999999998875 6899999988
No 116
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.05 E-value=0.079 Score=48.10 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|+..+++ ..+.+ .+++++|.|.|..+++++-.|.+.|++-+.|++ -+.++..++.+..+
T Consensus 107 ~~Gf~~~L~----~~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~n----------R~~~~a~~la~~~~---- 167 (272)
T PRK12550 107 YIAIAKLLA----SYQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVA----------RNEKTGKALAELYG---- 167 (272)
T ss_pred HHHHHHHHH----hcCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEe----------CCHHHHHHHHHHhC----
Confidence 566666664 33554 356999999999999999999999987555887 35566555544321
Q ss_pred CCCceecCCCccccccCceEEeeCCccCccccc-----ch--hcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQITIN-----NA--NNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e-----~a--~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
+ . +. +.+...++|++|-|++-+..... +. ..+ +..+|++....|......+.-+++|..++
T Consensus 168 ~---~-~~--~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i 236 (272)
T PRK12550 168 Y---E-WR--PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETPLIRYARARGKTVI 236 (272)
T ss_pred C---c-ch--hhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCHHHHHHHHCcCeEe
Confidence 1 0 10 11222468999999986554211 11 112 34589999999874444455588898876
No 117
>KOG1370|consensus
Probab=97.02 E-value=0.0017 Score=59.72 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
+.|+-++|.|+|.||.+.|..|..+|++|+ |+. +||--.+...-+ +.++.. .++.. .+.
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTE----------iDPI~ALQAaMe--------G~~V~t-m~ea~-~e~ 270 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTE----------IDPICALQAAME--------GYEVTT-LEEAI-REV 270 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEE-Eec----------cCchHHHHHHhh--------ccEeee-HHHhh-hcC
Confidence 578999999999999999999999999998 887 776443333222 223333 44444 488
Q ss_pred eEEeeCCc-cCcccccchhccCce-EEE
Q psy14499 136 DILIPAAI-EDQITINNANNVTAK-IIL 161 (262)
Q Consensus 136 DIlipaa~-~~~it~e~a~~~~~k-iIv 161 (262)
||||-++. .|+|+++..++++-. ||+
T Consensus 271 difVTtTGc~dii~~~H~~~mk~d~IvC 298 (434)
T KOG1370|consen 271 DIFVTTTGCKDIITGEHFDQMKNDAIVC 298 (434)
T ss_pred CEEEEccCCcchhhHHHHHhCcCCcEEe
Confidence 99999986 699999999888544 444
No 118
>KOG0068|consensus
Probab=97.00 E-value=0.0017 Score=60.25 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=70.7
Q ss_pred hCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc
Q psy14499 52 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 131 (262)
Q Consensus 52 ~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il 131 (262)
+|.++.|+++.|.|||.+|+.+|+.+...|.++++ .| | +.+.+..+.+ +.+.++ .+++|
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~-~d-------p--i~~~~~~~a~----------gvq~vs-l~Eil 198 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG-YD-------P--ITPMALAEAF----------GVQLVS-LEEIL 198 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEe-ec-------C--CCchHHHHhc----------cceeee-HHHHH
Confidence 46688999999999999999999999999999883 23 2 4454433322 334445 66777
Q ss_pred ccCceEE---eeCCc--cCcccccchhcc-CceEEEecCCCCC--CHHHHHHHH
Q psy14499 132 SIPCDIL---IPAAI--EDQITINNANNV-TAKIILEGANGPT--TTEADDILR 177 (262)
Q Consensus 132 ~~~~DIl---ipaa~--~~~it~e~a~~~-~~kiIve~AN~p~--t~ea~~~l~ 177 (262)
..+|.+ +|.++ ++.++.+.-.++ +.--|+..|.+.+ ++...+.|.
T Consensus 199 -~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 199 -PKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred -hhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHh
Confidence 356655 35554 488888877777 3446677777766 454455543
No 119
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.98 E-value=0.0031 Score=56.96 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=66.0
Q ss_pred CeEEEEc-CCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQG-FGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqG-fG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|+|+| +|.+|+.+++.+.+ .++++++++|+...-. .|-|..++.... .+ +...+++.+++ ..++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--~~~~~~~~~~~~-------~~-gv~~~~d~~~l-~~~~D 70 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--QGTDAGELAGIG-------KV-GVPVTDDLEAV-ETDPD 70 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--cCCCHHHhcCcC-------cC-CceeeCCHHHh-cCCCC
Confidence 5899999 69999999999876 6899999999422111 123333321110 01 12223323444 45799
Q ss_pred EEeeCCccCcccc--cchhccCceEEEecCCCCCCHHHHHHH----HHCCCeEe
Q psy14499 137 ILIPAAIEDQITI--NNANNVTAKIILEGANGPTTTEADDIL----RDKGIILA 184 (262)
Q Consensus 137 Ilipaa~~~~it~--e~a~~~~~kiIve~AN~p~t~ea~~~l----~~rgi~~i 184 (262)
|+|+|+.+....+ ..+-+.+..+|++-. .+|++..+.| ++.|+.++
T Consensus 71 vVIdfT~p~~~~~~~~~al~~g~~vVigtt--g~~~e~~~~l~~aA~~~g~~v~ 122 (266)
T TIGR00036 71 VLIDFTTPEGVLNHLKFALEHGVRLVVGTT--GFSEEDKQELADLAEKAGIAAV 122 (266)
T ss_pred EEEECCChHHHHHHHHHHHHCCCCEEEECC--CCCHHHHHHHHHHHhcCCccEE
Confidence 9999996644322 223333567888775 4666543333 45554443
No 120
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.98 E-value=0.0065 Score=55.50 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=65.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.++|..||. +++++.+.+++|++|+|+|-| .||+-++.+|.+.|+.|+ +++++- ..|.
T Consensus 136 ~~PcTp~avi----~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-v~hs~t----------~~l~----- 195 (285)
T PRK14191 136 FVPATPMGVM----RLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-VCHILT----------KDLS----- 195 (285)
T ss_pred CCCCcHHHHH----HHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-EEeCCc----------HHHH-----
Confidence 4578888774 566777899999999999999 899999999999999987 776411 1111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 164 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~A 164 (262)
+.. ..+||+|-|.. .+.++++..+ ...+|++.+
T Consensus 196 -----------------~~~-~~ADIvV~AvG~p~~i~~~~vk--~GavVIDvG 229 (285)
T PRK14191 196 -----------------FYT-QNADIVCVGVGKPDLIKASMVK--KGAVVVDIG 229 (285)
T ss_pred -----------------HHH-HhCCEEEEecCCCCcCCHHHcC--CCcEEEEee
Confidence 111 47888888875 4777776663 233555544
No 121
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.96 E-value=0.0084 Score=53.44 Aligned_cols=170 Identities=12% Similarity=0.105 Sum_probs=86.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEE--EEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKI--VAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~v--v~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|.|+|+|++|+.+++.|.+.|..+ +.++| -+.++..++.+..+ +.+..++..++. .++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~----------r~~~~~~~l~~~~~------~~~~~~~~~~~~-~~aD 63 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSP----------RNAQIAARLAERFP------KVRIAKDNQAVV-DRSD 63 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEEC----------CCHHHHHHHHHHcC------CceEeCCHHHHH-HhCC
Confidence 37999999999999999999887533 33555 25566555544321 122223234444 4799
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecCCCCCCHH-HHHHHHH--CCCeEeccccc-cchhhHH--HHHHHHhh---
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTE-ADDILRD--KGIILAPDVIT-NAGGVIV--SYFEWVQN--- 204 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~e-a~~~l~~--rgi~~iPD~~a-N~GGvi~--s~~E~~~~--- 204 (262)
+++-|.....+ .+....+ +-++|+.-+ .+++.+ ..+.+.. +-+.++|-.-. ...|++. ...++++.
T Consensus 64 vVilav~p~~~-~~vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~~~~~~~l~~ 141 (258)
T PRK06476 64 VVFLAVRPQIA-EEVLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPPDPFVAALFD 141 (258)
T ss_pred EEEEEeCHHHH-HHHHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCCHHHHHHHHH
Confidence 99999875433 2222222 345666655 455444 3444432 22334443211 1122211 11122221
Q ss_pred -hcCCCC--CHHHHHH------HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy14499 205 -LSNLLW--TEQEINL------RLNNIICNAFDAIWELANTKKVSLRTAAFII 248 (262)
Q Consensus 205 -~~~~~~--~~~~v~~------~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~ 248 (262)
.....| ++++... .....+ ..+....+.+.+.|++..+|-.++
T Consensus 142 ~lG~~~~~~~e~~~d~~~a~~s~~a~~~-~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 142 ALGTAVECDSEEEYDLLAAASALMATYF-GILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred hcCCcEEECChHhccceeehhccHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 112222 1222111 223333 456666777788888887665444
No 122
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.95 E-value=0.011 Score=59.32 Aligned_cols=140 Identities=12% Similarity=0.159 Sum_probs=86.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc----cc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW----SI 133 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il----~~ 133 (262)
..+|+|.|||.+|+.+++.|.+.|..++ +.| .|++.+.+..+. |.-.-|-+++ ..+++ -.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vv-vID----------~d~~~v~~~~~~-g~~v~~GDat----~~~~L~~agi~ 463 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRIT-VLE----------RDISAVNLMRKY-GYKVYYGDAT----QLELLRAAGAE 463 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEE-EEE----------CCHHHHHHHHhC-CCeEEEeeCC----CHHHHHhcCCc
Confidence 3589999999999999999999999988 778 688887766543 2111111221 12233 14
Q ss_pred CceEEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeEe-ccccccchhhHHHHHHHHhhhcC
Q psy14499 134 PCDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIILA-PDVITNAGGVIVSYFEWVQNLSN 207 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~i-PD~~aN~GGvi~s~~E~~~~~~~ 207 (262)
++|.+|-+...+..|- ..++++ ..++|+-+. +++..+.|++.|+..+ |+-+..+--.. -+.+. .
T Consensus 464 ~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~----~~~~~~~L~~~Ga~~vv~e~~es~l~l~---~~~L~---~ 533 (601)
T PRK03659 464 KAEAIVITCNEPEDTMKIVELCQQHFPHLHILARAR----GRVEAHELLQAGVTQFSRETFSSALELG---RKTLV---S 533 (601)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeC----CHHHHHHHHhCCCCEEEccHHHHHHHHH---HHHHH---H
Confidence 8999998877644443 234443 456666443 4677788999998654 66555322211 11222 2
Q ss_pred CCCCHHHHHHHHHHHH
Q psy14499 208 LLWTEQEINLRLNNII 223 (262)
Q Consensus 208 ~~~~~~~v~~~l~~~~ 223 (262)
...+++++.+.+++.-
T Consensus 534 lg~~~~~~~~~~~~~r 549 (601)
T PRK03659 534 LGMHPHQAQRAQQHFR 549 (601)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 3346677766665553
No 123
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.95 E-value=0.0047 Score=57.78 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=58.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC----------CC--CceecC
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD----------FN--EGEKIN 125 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~----------~~--~~~~~~ 125 (262)
.||+|.|||.+|+.+++.+.+ .++.+++|+|+ +++....+.+..| ..- +. +.....
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~----------~~~~~~~la~~~G-~~~~~~~~~~~~~~~~~~i~V~~ 70 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT----------KPDYEARVAVEKG-YPLYVADPEREKAFEEAGIPVAG 70 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC----------ChHHHHHHHHhcC-CCccccCccccccccCCceEEcC
Confidence 589999999999999999876 57999999983 3332222222221 100 11 111112
Q ss_pred CCccccccCceEEeeCCccCcccccchhcc---CceEEEecCC
Q psy14499 126 DSKEFWSIPCDILIPAAIEDQITINNANNV---TAKIILEGAN 165 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN 165 (262)
+.++++ .++|++++|+... .+.+++... ++++|..+..
T Consensus 71 ~~~el~-~~vDVVIdaT~~~-~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 71 TIEDLL-EKADIVVDATPGG-VGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred ChhHhh-ccCCEEEECCCch-hhHHHHHHHHHCCCEEEEcCCC
Confidence 233444 4799999999654 555555544 6788888753
No 124
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.93 E-value=0.0025 Score=59.47 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=54.5
Q ss_pred EEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC--CccCCCC---------ceecCCCc
Q psy14499 61 ISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR--SIKDFNE---------GEKINDSK 128 (262)
Q Consensus 61 v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g--~~~~~~~---------~~~~~~~~ 128 (262)
|+|.|||.+|+.+++.+.+ .+.++|+|+| .|++....+....+ +...++. .....+.+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD----------~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~e 70 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTK----------TSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLE 70 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEec----------CChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHH
Confidence 5899999999999999865 5799999999 56664333333222 1111111 01111244
Q ss_pred cccccCceEEeeCCccCcccccchhcc---CceEEEec
Q psy14499 129 EFWSIPCDILIPAAIEDQITINNANNV---TAKIILEG 163 (262)
Q Consensus 129 ~il~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~ 163 (262)
+++ .++|++++|++ ...+.+++..+ ++|.|+-+
T Consensus 71 eLl-~~vDiVve~Tp-~~~~~~na~~~~~~GakaVl~~ 106 (333)
T TIGR01546 71 DLL-EKVDIVVDATP-GGIGAKNKPLYEKAGVKAIFQG 106 (333)
T ss_pred HHh-hcCCEEEECCC-CCCChhhHHHHHhCCcCEEEEC
Confidence 565 57999999985 33444444443 55544433
No 125
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.93 E-value=0.005 Score=56.31 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=76.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
.+|+++|+|++|...|+.|.+.|+.+. |.| .++++..+...+.| ++..+++.+.. .++||+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~-v~~----------r~~~ka~~~~~~~G-------a~~a~s~~eaa-~~aDvV 61 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVT-VYN----------RTPEKAAELLAAAG-------ATVAASPAEAA-AEADVV 61 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEE-EEe----------CChhhhhHHHHHcC-------CcccCCHHHHH-HhCCEE
Confidence 479999999999999999999999987 888 67777444443322 33333232333 588999
Q ss_pred eeCCc-----cCcccccc--hhcc-CceEEEecCCCC-C-CHHHHHHHHHCCCeEeccccccchhh
Q psy14499 139 IPAAI-----EDQITINN--ANNV-TAKIILEGANGP-T-TTEADDILRDKGIILAPDVITNAGGV 194 (262)
Q Consensus 139 ipaa~-----~~~it~e~--a~~~-~~kiIve~AN~p-~-t~ea~~~l~~rgi~~iPD~~aN~GGv 194 (262)
|-|=+ ..++.+++ +..+ +.+++++-.... . +.+..+.++++|+.++=-.+. ||+
T Consensus 62 itmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVs--Gg~ 125 (286)
T COG2084 62 ITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVS--GGV 125 (286)
T ss_pred EEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCcc--CCc
Confidence 87643 23333322 2222 466777776664 3 567778889999999865555 555
No 126
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.90 E-value=0.013 Score=53.01 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=69.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC----EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGA----KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~----~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++|.++|+|++|+++++-|.+.|. .|+ ++| .+.+++.++.++.| .+..++..++. .
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~-v~~----------r~~~~~~~l~~~~g-------~~~~~~~~e~~-~ 62 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQII-CSD----------LNVSNLKNASDKYG-------ITITTNNNEVA-N 62 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEE-EEC----------CCHHHHHHHHHhcC-------cEEeCCcHHHH-h
Confidence 3589999999999999999998874 344 666 35666666554333 22222234444 4
Q ss_pred CceEEeeCCccCcccc---cchhccCc-eEEEecCCCCCCHHHHHHHHH--CCCeEeccccc
Q psy14499 134 PCDILIPAAIEDQITI---NNANNVTA-KIILEGANGPTTTEADDILRD--KGIILAPDVIT 189 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~~~-kiIve~AN~p~t~ea~~~l~~--rgi~~iPD~~a 189 (262)
+|||+|-|-.+..+.. +..+.++. ++|+.-+-+-...+..+.|.. +=+.++|..-+
T Consensus 63 ~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~ 124 (272)
T PRK12491 63 SADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPV 124 (272)
T ss_pred hCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHH
Confidence 8999999887643322 22222332 477777776665666666632 34566666544
No 127
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.89 E-value=0.0016 Score=54.63 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=27.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+...+|+|.|.|+||+++++.|..+|++++ +.|
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~-~~d 50 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVV-VPD 50 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEE-EEE
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEE-ecc
Confidence 567899999999999999999999999988 666
No 128
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.86 E-value=0.014 Score=53.25 Aligned_cols=92 Identities=24% Similarity=0.317 Sum_probs=67.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..||. +++++.+.+++|++|+|+|.+ .||+.++.+|...|++|+ +++++- ..|
T Consensus 131 ~~PcTp~av~----~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs~t----------~~L------ 189 (279)
T PRK14178 131 FAPCTPNGIM----TLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHSKT----------ENL------ 189 (279)
T ss_pred CCCCCHHHHH----HHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEecCh----------hHH------
Confidence 4678888875 456677999999999999998 899999999999999987 766421 111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 164 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~A 164 (262)
.+.. .++||+|-|.. .+.++++..+ ...+|++-+
T Consensus 190 ----------------~~~~-~~ADIvI~Avgk~~lv~~~~vk--~GavVIDVg 224 (279)
T PRK14178 190 ----------------KAEL-RQADILVSAAGKAGFITPDMVK--PGATVIDVG 224 (279)
T ss_pred ----------------HHHH-hhCCEEEECCCcccccCHHHcC--CCcEEEEee
Confidence 1122 47889998876 6888887763 234666655
No 129
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.85 E-value=0.0088 Score=58.87 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC--------C--ceecC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN--------E--GEKIN 125 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~--------~--~~~~~ 125 (262)
..+.+|+|+|+|.+|..++..+...|++|+ +.| .+..++...++-......++ + ++.++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d----------~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFD----------TRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHcCCeEEeccccccccccccceeecC
Confidence 356899999999999999999999999966 777 34554433332111110000 0 12222
Q ss_pred CCccc------c---ccCceEEeeCC------ccCcccccchhccCc-eEEEec
Q psy14499 126 DSKEF------W---SIPCDILIPAA------IEDQITINNANNVTA-KIILEG 163 (262)
Q Consensus 126 ~~~~i------l---~~~~DIlipaa------~~~~it~e~a~~~~~-kiIve~ 163 (262)
.+.. + -.++||+|.|+ .+.++|++..+.++. -+|++-
T Consensus 231 -~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 231 -EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred -HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 1111 2 15799999998 234688888888852 355543
No 130
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=96.84 E-value=0.013 Score=54.56 Aligned_cols=93 Identities=16% Similarity=0.340 Sum_probs=56.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc-CCCC------------ce
Q psy14499 60 KISIQGFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK-DFNE------------GE 122 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~-~~~~------------~~ 122 (262)
||+|.|||.+|+.+++.|.+. +..|++|.| +...+.+.+..++.+.- .|++ .+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd----------~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~ 70 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE----------LADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGD 70 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec----------CCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCe
Confidence 589999999999999999875 389999988 33334444444433321 1210 11
Q ss_pred ---ec--CCCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEec
Q psy14499 123 ---KI--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEG 163 (262)
Q Consensus 123 ---~~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~ 163 (262)
.. .+++++ | +.++|++++|+... .+.+.+... .|+.|.-.
T Consensus 71 ~i~v~~~~~p~~~~w~~~gvDiVie~tG~~-~s~e~a~~~l~aGa~~V~~S 120 (325)
T TIGR01532 71 CIRVLHSPTPEALPWRALGVDLVLDCTGVY-GNREQGERHIRAGAKRVLFS 120 (325)
T ss_pred EEEEEEcCChhhccccccCCCEEEEccchh-ccHHHHHHHHHcCCeEEEec
Confidence 11 023332 3 46999999999754 555555544 45644444
No 131
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.84 E-value=0.0046 Score=55.73 Aligned_cols=107 Identities=11% Similarity=0.184 Sum_probs=63.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
+||+|+|+|++|+.+++.|.+. +..+++|++... ...+..+.... +...+++.+++ ..++|+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~--------~~~~~~~~~~~--------~~~~~~d~~~l-~~~~Dv 64 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEH--------SIDAVRRALGE--------AVRVVSSVDAL-PQRPDL 64 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCC--------CHHHHhhhhcc--------CCeeeCCHHHh-ccCCCE
Confidence 5899999999999999998875 788888875211 11111111110 12223334455 668999
Q ss_pred EeeCCccCcccccchhcc---CceEEEecCCCCCC-----HHHHHHHHHCCCeEe
Q psy14499 138 LIPAAIEDQITINNANNV---TAKIILEGANGPTT-----TEADDILRDKGIILA 184 (262)
Q Consensus 138 lipaa~~~~it~e~a~~~---~~kiIve~AN~p~t-----~ea~~~l~~rgi~~i 184 (262)
+++|+..... .+.+... +..++++.. +.++ ++..+..+++|..+.
T Consensus 65 Vve~t~~~~~-~e~~~~aL~aGk~Vvi~s~-~Al~d~~~~~~L~~~A~~~g~~l~ 117 (265)
T PRK13303 65 VVECAGHAAL-KEHVVPILKAGIDCAVISV-GALADEALRERLEQAAEAGGARLH 117 (265)
T ss_pred EEECCCHHHH-HHHHHHHHHcCCCEEEeCh-HHhcCHHHHHHHHHHHHHCCCEEE
Confidence 9999987644 4444443 345665432 2222 333455567786654
No 132
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.83 E-value=0.0069 Score=55.32 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=67.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEe
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 139 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIli 139 (262)
+|.++|.|++|+.+++.|.+.|..++ +.|. ++. ..++.+ .| ....+++.++. .+||+++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~-v~~~----------~~~-~~~~~~-~g-------~~~~~s~~~~~-~~advVi 60 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLH-VTTI----------GPV-ADELLS-LG-------AVSVETARQVT-EASDIIF 60 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEE-EEeC----------CHh-HHHHHH-cC-------CeecCCHHHHH-hcCCEEE
Confidence 69999999999999999999999876 6662 332 222222 22 22222233444 5899999
Q ss_pred eCCccCc-----cccc--chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEecccc
Q psy14499 140 PAAIEDQ-----ITIN--NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 140 paa~~~~-----it~e--~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~ 188 (262)
-|-+.+. +.++ -+..+ +.++|++-..... +.+..+.+.++|+.++--.+
T Consensus 61 ~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPV 119 (292)
T PRK15059 61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPV 119 (292)
T ss_pred EeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 8866432 1111 12222 4567887765532 45566888899998885544
No 133
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.82 E-value=0.02 Score=51.78 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=67.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|.|.+|+.++..|.+.|.+|+ +.| .+.+.+.+..+. +.+.. .++..+.+ .+||++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~-~~d----------~~~~~~~~a~~~-g~~~~------~~~~~~~~-~~aDlV 61 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVY-GVS----------RRESTCERAIER-GLVDE------ASTDLSLL-KDCDLV 61 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHC-CCccc------ccCCHhHh-cCCCEE
Confidence 379999999999999999999999877 556 355555544432 22211 11012233 589999
Q ss_pred eeCCccCcccc---cchhccC-ceEEEecCCCCCCHHHHHHHHHCCCeEec-cccccc--hhhHHHHHH
Q psy14499 139 IPAAIEDQITI---NNANNVT-AKIILEGANGPTTTEADDILRDKGIILAP-DVITNA--GGVIVSYFE 200 (262)
Q Consensus 139 ipaa~~~~it~---e~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~~iP-D~~aN~--GGvi~s~~E 200 (262)
|.|.+...+.. +..+.++ ..+|.+.+- +.++..+.+.+....+++ -++++. .|+..+...
T Consensus 62 ilavp~~~~~~~~~~l~~~l~~~~ii~d~~S--vk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~ 128 (279)
T PRK07417 62 ILALPIGLLLPPSEQLIPALPPEAIVTDVGS--VKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRG 128 (279)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEeCcc--hHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHH
Confidence 99998654422 2222233 235554333 233333444444333554 345443 345444433
No 134
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.81 E-value=0.015 Score=53.59 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=76.6
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 126 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 126 (262)
+.+.+.. ...++|.|+|.|..|+..++.+.. ++.+-|.|.+ .++++..++.++.... +. .....++
T Consensus 116 a~~~La~-~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~----------Rs~~~a~~~a~~~~~~-g~-~~~~~~~ 182 (314)
T PRK06141 116 AASYLAR-KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWG----------RDPAKAEALAAELRAQ-GF-DAEVVTD 182 (314)
T ss_pred HHHHhCC-CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEc----------CCHHHHHHHHHHHHhc-CC-ceEEeCC
Confidence 3444443 367899999999999999987665 5655454777 4666666665542211 10 1222332
Q ss_pred CccccccCceEEeeCCccC--cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 127 SKEFWSIPCDILIPAAIED--QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~--~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
.++.+ .++||++-|+... +++.+..+. .+-+..-+++.|...|....+.+++..|+
T Consensus 183 ~~~av-~~aDIVi~aT~s~~pvl~~~~l~~-g~~i~~ig~~~~~~~El~~~~~~~a~~~v 240 (314)
T PRK06141 183 LEAAV-RQADIISCATLSTEPLVRGEWLKP-GTHLDLVGNFTPDMRECDDEAIRRASVYV 240 (314)
T ss_pred HHHHH-hcCCEEEEeeCCCCCEecHHHcCC-CCEEEeeCCCCcccccCCHHHHhcCcEEE
Confidence 33444 4899999887643 233333322 34577788888888888777778886555
No 135
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.81 E-value=0.0097 Score=54.92 Aligned_cols=113 Identities=13% Similarity=0.085 Sum_probs=67.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC------ceecCCCcccc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE------GEKINDSKEFW 131 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~------~~~~~~~~~il 131 (262)
.++|+|+|.|++|..++..|.+.|..|. +.+ -+.+.+..+.+.......+++ ....+++.+.+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~-~~~----------r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~ 72 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVR-LWA----------RRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL 72 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEe----------CCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence 4589999999999999999999999877 555 244444444332111111111 12222233333
Q ss_pred ccCceEEeeCCccCcccccchhccC-ceEEEecCCCCC-----CHHHHHHHHH---CCCeE
Q psy14499 132 SIPCDILIPAAIEDQITINNANNVT-AKIILEGANGPT-----TTEADDILRD---KGIIL 183 (262)
Q Consensus 132 ~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p~-----t~ea~~~l~~---rgi~~ 183 (262)
.++|+++.|.....+ .+..+.++ ..+|+...|+-. .....+.+.+ +++.+
T Consensus 73 -~~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~ 131 (328)
T PRK14618 73 -AGADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAV 131 (328)
T ss_pred -cCCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEE
Confidence 589999999887653 44445553 347777788521 2334455555 66543
No 136
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=96.74 E-value=0.0067 Score=56.41 Aligned_cols=34 Identities=18% Similarity=0.413 Sum_probs=31.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.|++++|+|+|+|++|+..|+.|...|.+|+ +.|
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~Vi-V~~ 46 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVV-VGV 46 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEE-EEE
Confidence 4799999999999999999999999999998 443
No 137
>PRK07680 late competence protein ComER; Validated
Probab=96.73 E-value=0.0048 Score=55.51 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=67.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
++|.|+|+|++|+.+++.|.+.|. ..+.++| -+.+.+..+.++. ++.....+..++. .++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~----------r~~~~~~~~~~~~------~g~~~~~~~~~~~-~~a 63 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITN----------RTPAKAYHIKERY------PGIHVAKTIEEVI-SQS 63 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC----------CCHHHHHHHHHHc------CCeEEECCHHHHH-HhC
Confidence 369999999999999999999884 2344666 3555554444332 1222222233444 489
Q ss_pred eEEeeCCccCcccc---cchhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 136 DILIPAAIEDQITI---NNANNV-TAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 136 DIlipaa~~~~it~---e~a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
|+++-|.....+.+ +..+.+ +.++|+.-+|+-...+..+.+..+.+.++|.
T Consensus 64 DiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~ 118 (273)
T PRK07680 64 DLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPS 118 (273)
T ss_pred CEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCC
Confidence 99999986544321 122233 3468888887654444455555455677774
No 138
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.73 E-value=0.015 Score=54.48 Aligned_cols=116 Identities=15% Similarity=0.240 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHH-CCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFK-AGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~-~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
.|++-...+++.+.+.++.++++++|+|.|. |.+|+.+++.|.+ .|. +++ +.++ +..++.++.++.
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R----------~~~rl~~La~el 201 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR----------QQERLQELQAEL 201 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC----------CHHHHHHHHHHh
Confidence 4667777788888888999999999999998 8999999999975 464 555 5552 344444444332
Q ss_pred CCccCCCCceecCCCccccccCceEEeeCCcc--C-cccccchhccCceEEEecCCCC-CCHHH
Q psy14499 113 RSIKDFNEGEKINDSKEFWSIPCDILIPAAIE--D-QITINNANNVTAKIILEGANGP-TTTEA 172 (262)
Q Consensus 113 g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~--~-~it~e~a~~~~~kiIve~AN~p-~t~ea 172 (262)
. .....+ .++.+ .++|+++-++.. . .++.+..+ +..++++.|.-. +.|+.
T Consensus 202 ~------~~~i~~-l~~~l-~~aDiVv~~ts~~~~~~I~~~~l~--~~~~viDiAvPRDVd~~v 255 (340)
T PRK14982 202 G------GGKILS-LEEAL-PEADIVVWVASMPKGVEIDPETLK--KPCLMIDGGYPKNLDTKV 255 (340)
T ss_pred c------cccHHh-HHHHH-ccCCEEEECCcCCcCCcCCHHHhC--CCeEEEEecCCCCCCccc
Confidence 1 111112 23344 479999988753 3 26665443 556899998764 45543
No 139
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.69 E-value=0.0078 Score=53.16 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=64.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|.|+|+|.+|..+++++.+- .++.++|+| -|.++..++.+..+. ... ++.++++ .+.|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D----------~~~ek~~~~~~~~~~------~~~-s~ide~~-~~~D 62 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYD----------RDEEKAKELEASVGR------RCV-SDIDELI-AEVD 62 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEec----------CCHHHHHHHHhhcCC------Ccc-ccHHHHh-hccc
Confidence 4789999999999999988753 689999999 466776665543321 111 2245666 7999
Q ss_pred EEeeCCccCcccccchhcc--CceEEEecCCCCCCHHHHHHH
Q psy14499 137 ILIPAAIEDQITINNANNV--TAKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~ea~~~l 176 (262)
++++||..+.+-+---+.+ .+.+|+=.-..-..|+....|
T Consensus 63 lvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl 104 (255)
T COG1712 63 LVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERL 104 (255)
T ss_pred eeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHH
Confidence 9999998766543322223 234444444333356655444
No 140
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.68 E-value=0.018 Score=58.14 Aligned_cols=111 Identities=17% Similarity=0.334 Sum_probs=72.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc----c
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS----I 133 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~----~ 133 (262)
..+|+|.|||.+|+.+++.|.+.|..++ +.| .|++.+.+..+. |.-.-|-+++ ..++++ .
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vv-vID----------~d~~~v~~~~~~-g~~v~~GDat----~~~~L~~agi~ 463 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMT-VLD----------HDPDHIETLRKF-GMKVFYGDAT----RMDLLESAGAA 463 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEE-EEE----------CCHHHHHHHHhc-CCeEEEEeCC----CHHHHHhcCCC
Confidence 4689999999999999999999999988 668 688887776543 2111111221 122331 3
Q ss_pred CceEEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeEe-cccc
Q psy14499 134 PCDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIILA-PDVI 188 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~i-PD~~ 188 (262)
++|.+|-|...+..|. ..++++ +.++|+=+. +++..+.|++.|+..+ |...
T Consensus 464 ~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~----d~~~~~~L~~~Gad~v~~e~~ 520 (621)
T PRK03562 464 KAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARAR----DVDHYIRLRQAGVEKPERETF 520 (621)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHCCCCEEehhhH
Confidence 7899998886544443 344444 345666432 4566788899998765 4443
No 141
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.67 E-value=0.032 Score=51.28 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=84.8
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+-...|+.=...+--.+.+++.. ...++++|+|.|..|+..++.+.. .+.+-+.|.| .+.++..++.+
T Consensus 100 d~~~lT~~RTaA~sala~~~La~-~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~----------r~~~~a~~~a~ 168 (304)
T PRK07340 100 DGPTVTGRRTAAVSLLAARTLAP-APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRG----------RTAASAAAFCA 168 (304)
T ss_pred cChhHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEc----------CCHHHHHHHHH
Confidence 33444544333333334444443 367899999999999999999975 6777676877 56777666665
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
+.... ++ ... .++.++.+ .++||++-|+.. -+++.. -+-.+-++.=|++.|-..|.+..+..+- .++-|.
T Consensus 169 ~~~~~-~~-~~~-~~~~~~av-~~aDiVitaT~s~~Pl~~~~--~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~ 240 (304)
T PRK07340 169 HARAL-GP-TAE-PLDGEAIP-EAVDLVVTATTSRTPVYPEA--ARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD 240 (304)
T ss_pred HHHhc-CC-eeE-ECCHHHHh-hcCCEEEEccCCCCceeCcc--CCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence 43321 11 111 22234445 499999999874 444442 2335668888999998777665555554 344344
No 142
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.62 E-value=0.0063 Score=55.60 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=43.0
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+.|-+|+... +++.+.+++|++|+|+|.|. ||+.++.+|.+.|++|+ |+++
T Consensus 139 ~p~T~~gii~~----L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt-v~~~ 191 (283)
T PRK14192 139 GSATPAGIMRL----LKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVT-ICHS 191 (283)
T ss_pred cCCcHHHHHHH----HHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE-EEeC
Confidence 45777766554 45578899999999999998 99999999999999655 8874
No 143
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.57 E-value=0.096 Score=47.26 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC----CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g----~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++|.++|.|++|+++++.|.+.| ..++ ++|+ . +.+.+..+.++.+ .+..+++.++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~-v~~r-------~--~~~~~~~l~~~~g-------~~~~~~~~e~~- 63 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQIT-VSNR-------S--NETRLQELHQKYG-------VKGTHNKKELL- 63 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEE-EECC-------C--CHHHHHHHHHhcC-------ceEeCCHHHHH-
Confidence 4579999999999999999999887 4444 5552 1 1233444443322 22222133343
Q ss_pred cCceEEeeCCccCcccc---cchhccC-ceEEEecCCCCCCHH-HHHH
Q psy14499 133 IPCDILIPAAIEDQITI---NNANNVT-AKIILEGANGPTTTE-ADDI 175 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~---e~a~~~~-~kiIve~AN~p~t~e-a~~~ 175 (262)
.+|||+|-|-.+..+.+ +....++ .++|+.-+++- +++ ..+.
T Consensus 64 ~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi-~~~~l~~~ 110 (279)
T PRK07679 64 TDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGV-STHSIRNL 110 (279)
T ss_pred hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCC-CHHHHHHH
Confidence 47899998877644332 1112232 35788876654 344 4443
No 144
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.55 E-value=0.0061 Score=52.74 Aligned_cols=37 Identities=38% Similarity=0.533 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|+..+|+|+|.|.+|..+++.|...|..-+.+.|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4788999999999999999999999998555588854
No 145
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.54 E-value=0.013 Score=54.73 Aligned_cols=102 Identities=8% Similarity=0.149 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC
Q psy14499 41 VFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120 (262)
Q Consensus 41 v~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~ 120 (262)
+..+...+++.. .++.+++|.|+|.|.+|+-+++.|.+.|++-+.|+.++-.. .+.+.+ .
T Consensus 158 v~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-----~~~~~~--------------~ 217 (338)
T PRK00676 158 IESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-----LPYRTV--------------V 217 (338)
T ss_pred HHHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-----cchhhh--------------h
Confidence 333334444554 46899999999999999999999999997655588764311 000000 0
Q ss_pred ceecCCCccccccCceEEeeC-----CccCcccccchhccCceEEEecCCCC
Q psy14499 121 GEKINDSKEFWSIPCDILIPA-----AIEDQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 121 ~~~~~~~~~il~~~~DIlipa-----a~~~~it~e~a~~~~~kiIve~AN~p 167 (262)
.+.+ ++ ..++||+|-| ++...++.+.......+++++-|+..
T Consensus 218 ~~~~----~~-~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR 264 (338)
T PRK00676 218 REEL----SF-QDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR 264 (338)
T ss_pred hhhh----hc-ccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC
Confidence 0001 12 2588999965 45577777776665557999999865
No 146
>PRK08328 hypothetical protein; Provisional
Probab=96.51 E-value=0.0029 Score=55.92 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=31.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++.+|+|+|.|.+|..+++.|.+.|..-+.+.|
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD 58 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLID 58 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 35789999999999999999999999987676877
No 147
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.51 E-value=0.011 Score=51.73 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=59.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++++|.|.||+|.++++.|...|+.|+ |..++ +++++....+..+. ..+..+ +++.. ..+||+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~r---------~~~~~~a~a~~l~~-----~i~~~~-~~dA~-~~aDVV 64 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSSR---------GPKALAAAAAALGP-----LITGGS-NEDAA-ALADVV 64 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecCC---------ChhHHHHHHHhhcc-----ccccCC-hHHHH-hcCCEE
Confidence 578999999999999999999999998 65432 34555555443321 122222 22222 469999
Q ss_pred eeCCccCccc---ccchhccCceEEEecCCC
Q psy14499 139 IPAAIEDQIT---INNANNVTAKIILEGANG 166 (262)
Q Consensus 139 ipaa~~~~it---~e~a~~~~~kiIve~AN~ 166 (262)
+.+-+-..+. .+..+.++-|||++..|.
T Consensus 65 vLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 65 VLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred EEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 9876643332 334444567999999995
No 148
>PRK11579 putative oxidoreductase; Provisional
Probab=96.48 E-value=0.037 Score=51.44 Aligned_cols=109 Identities=13% Similarity=0.263 Sum_probs=67.0
Q ss_pred CeEEEEcCCHHHH-HHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCc
Q psy14499 59 SKISIQGFGNVGS-VAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~-~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~ 135 (262)
.||+|+|+|.+|+ ..+..+.. .++++++|+| .|.++.. ++ |++...+++.++++. .+.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d----------~~~~~~~---~~------~~~~~~~~~~~ell~~~~v 65 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSS----------SDATKVK---AD------WPTVTVVSEPQHLFNDPNI 65 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEEC----------CCHHHHH---hh------CCCCceeCCHHHHhcCCCC
Confidence 6999999999998 45676655 4799999999 4555432 11 222333444667774 579
Q ss_pred eEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEeccc
Q psy14499 136 DILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDV 187 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~ 187 (262)
|+++-|++.. .+.+.+... ...++||=.=.....|++++ .+++|+.+...+
T Consensus 66 D~V~I~tp~~-~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~ 122 (346)
T PRK11579 66 DLIVIPTPND-THFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFH 122 (346)
T ss_pred CEEEEcCCcH-HHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEe
Confidence 9999988753 355544443 34466653222223445443 367787775444
No 149
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.48 E-value=0.055 Score=47.43 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC---E-EEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA---K-IVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~---~-vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.+||.|+|.|++|+.+++.|.+.+. + ++ +++. -+.+++.++.++.+ ....++.++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~-~~~~---------~~~~~~~~~~~~~~-------~~~~~~~~~~~- 64 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEII-VSNR---------SNVEKLDQLQARYN-------VSTTTDWKQHV- 64 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEE-EECC---------CCHHHHHHHHHHcC-------cEEeCChHHHH-
Confidence 46799999999999999999988762 3 33 3331 13455555554332 12222244455
Q ss_pred cCceEEeeCCccCcccccchhc----cCceEEEecCCCCCCHHHHHHH
Q psy14499 133 IPCDILIPAAIEDQITINNANN----VTAKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~----~~~kiIve~AN~p~t~ea~~~l 176 (262)
.++|+++-|.+...+ .+.+.+ ++-++|+..+.+-......+.+
T Consensus 65 ~~~DiViiavp~~~~-~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~ 111 (245)
T PRK07634 65 TSVDTIVLAMPPSAH-EELLAELSPLLSNQLVVTVAAGIGPSYLEERL 111 (245)
T ss_pred hcCCEEEEecCHHHH-HHHHHHHHhhccCCEEEEECCCCCHHHHHHHc
Confidence 489999999887544 333333 2446777777664434333433
No 150
>KOG0069|consensus
Probab=96.47 E-value=0.017 Score=53.87 Aligned_cols=104 Identities=16% Similarity=0.295 Sum_probs=67.3
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
-++.|+||.|.|+|.+|+.+|+.|..+|..+. -+.. ....++...++- .+.++ .++.+ .
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~-y~~r-------~~~~~~~~~~~~-----------~~~~d-~~~~~-~ 216 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVIL-YHSR-------TQLPPEEAYEYY-----------AEFVD-IEELL-A 216 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhccceee-eecc-------cCCchhhHHHhc-----------ccccC-HHHHH-h
Confidence 46899999999999999999999999994443 2221 112222222221 11223 44555 6
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHHH-HHHHHH
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTEA-DDILRD 178 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~ea-~~~l~~ 178 (262)
++|+++-|-+. +++|.+....++ .-+||..|-+++ ..++ .+.|++
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 89999988664 556666666664 558999999997 4444 355444
No 151
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=96.47 E-value=0.017 Score=47.99 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=34.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.||+|.|||.+|+.+++.+.. ....+++|.|. +.|++.+.-+.+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~--------~~~~~~~a~Llk 45 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDP--------APDPEYLAYLLK 45 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEES--------SSSHHHHHHHHH
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecc--------cccchhhhhhhh
Confidence 489999999999999999874 57999999884 236666544443
No 152
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.45 E-value=0.0053 Score=52.18 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=45.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH----------hcCCccC------CCCcee
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT----------FTRSIKD------FNEGEK 123 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~----------~~g~~~~------~~~~~~ 123 (262)
+|+|+|.|.+|+.+|..+...|+.|+ +.| .|.+.+.+..+ +.+.+.. +...+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d----------~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~ 69 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVT-LYD----------RSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF 69 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEE-EE-----------SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEE-EEE----------CChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc
Confidence 68999999999999999999999988 877 45554433322 1222220 001112
Q ss_pred cCCCccccccCceEEeeCCccCccc
Q psy14499 124 INDSKEFWSIPCDILIPAAIEDQIT 148 (262)
Q Consensus 124 ~~~~~~il~~~~DIlipaa~~~~it 148 (262)
.++.+++. +||++|+|.+++.--
T Consensus 70 ~~dl~~~~--~adlViEai~E~l~~ 92 (180)
T PF02737_consen 70 TTDLEEAV--DADLVIEAIPEDLEL 92 (180)
T ss_dssp ESSGGGGC--TESEEEE-S-SSHHH
T ss_pred ccCHHHHh--hhheehhhccccHHH
Confidence 22222332 999999999876543
No 153
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.44 E-value=0.0085 Score=55.15 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=45.3
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|+. +++++.|.+++|++|+|+|-| .||+.++.+|.+.|+.|+ ++++
T Consensus 138 ~~PcTp~aii----~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~ 191 (301)
T PRK14194 138 LTPCTPSGCL----RLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHS 191 (301)
T ss_pred CCCCcHHHHH----HHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECC
Confidence 3578888774 556677999999999999996 999999999999999988 7764
No 154
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.44 E-value=0.01 Score=54.23 Aligned_cols=53 Identities=26% Similarity=0.382 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHH-HHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNV-GSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~V-G~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|+ .+++++.+++++|++|+|+|.+++ |+-++.+|.++|++|+ ++++
T Consensus 137 ~~PcTp~ai----i~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs 190 (285)
T PRK14189 137 FRPCTPYGV----MKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHS 190 (285)
T ss_pred CcCCCHHHH----HHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecC
Confidence 457888777 456677899999999999999886 9999999999999988 6553
No 155
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.43 E-value=0.011 Score=54.12 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=66.4
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..||+ +++++.+.+++|++++|+|-++ ||+-++.+|.+.|++|+ +|+++- -|
T Consensus 138 ~~PcTp~av~----~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-v~hs~T-------~~---------- 195 (285)
T PRK10792 138 LRPCTPRGIM----TLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-VCHRFT-------KN---------- 195 (285)
T ss_pred CCCCCHHHHH----HHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-EEECCC-------CC----------
Confidence 3578888875 4556678999999999999999 99999999999999987 877531 01
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 164 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~A 164 (262)
..+.. ..+||+|-|.. .+.++.+..+. ..+|++.+
T Consensus 196 ---------------l~~~~-~~ADIvi~avG~p~~v~~~~vk~--gavVIDvG 231 (285)
T PRK10792 196 ---------------LRHHV-RNADLLVVAVGKPGFIPGEWIKP--GAIVIDVG 231 (285)
T ss_pred ---------------HHHHH-hhCCEEEEcCCCcccccHHHcCC--CcEEEEcc
Confidence 11122 47888888874 46777765542 34666655
No 156
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.42 E-value=0.011 Score=53.99 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..||.. ++++.+.++.|++|+|+|-++ ||+-++.+|.+.|++|+ +|++
T Consensus 143 ~~PcTp~av~~----ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-v~hs 196 (287)
T PRK14176 143 LVPCTPHGVIR----ALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-VCHV 196 (287)
T ss_pred CCCCcHHHHHH----HHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-EEec
Confidence 45788888754 556678999999999999999 99999999999999987 8774
No 157
>PRK06046 alanine dehydrogenase; Validated
Probab=96.37 E-value=0.055 Score=50.20 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=83.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+-...|++=...+---+.+.+..+ .-.++.|+|.|..|+..++.|.. .+.+.+.|+| .+.+...++.+
T Consensus 104 d~~~lT~~RTaA~sala~~~La~~-~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~----------r~~~~~~~~~~ 172 (326)
T PRK06046 104 DGTYLTDMRTGAAGGVAAKYLARK-DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYD----------RTKSSAEKFVE 172 (326)
T ss_pred cCccHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEEC----------CCHHHHHHHHH
Confidence 334455543333333334554332 56799999999999999998874 5788998988 56666655554
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCccC--cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecccc
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIED--QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~--~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~ 188 (262)
+.....++ ..+..++.++.++ +||++-|++.. +++.+..+ -.+.+..=|++-|-..|.+..+.++.- ++-|..
T Consensus 173 ~~~~~~~~-~v~~~~~~~~~l~--aDiVv~aTps~~P~~~~~~l~-~g~hV~~iGs~~p~~~El~~~~~~~a~-vvvD~~ 247 (326)
T PRK06046 173 RMSSVVGC-DVTVAEDIEEACD--CDILVTTTPSRKPVVKAEWIK-EGTHINAIGADAPGKQELDPEILLRAK-VVVDDM 247 (326)
T ss_pred HHHhhcCc-eEEEeCCHHHHhh--CCEEEEecCCCCcEecHHHcC-CCCEEEecCCCCCccccCCHHHHhCCc-EEECCH
Confidence 32110010 1222333455553 99999998752 33333332 245577788888876666555555553 444543
No 158
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.35 E-value=0.013 Score=62.21 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCE------------EEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCcee
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAK------------IVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~------------vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~ 123 (262)
+.++|+|+|.|.||+..++.|.+. ++. +|+|+| .++++..++.+....+. ....
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD----------~~~~~a~~la~~~~~~~---~v~l 634 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVAS----------LYLKDAKETVEGIENAE---AVQL 634 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEEC----------CCHHHHHHHHHhcCCCc---eEEe
Confidence 577999999999999999999874 333 577899 67777666554321110 0111
Q ss_pred -cCCCccccc--cCceEEeeCCccCcccccchhc---cCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHH-
Q psy14499 124 -INDSKEFWS--IPCDILIPAAIEDQITINNANN---VTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIV- 196 (262)
Q Consensus 124 -~~~~~~il~--~~~DIlipaa~~~~it~e~a~~---~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~- 196 (262)
+.+.+++.. .++|++|-|++.. .+.+.+.. .+..++++.-..+-+.+..+..+++|+.++|++-.+ -|+..
T Consensus 635 Dv~D~e~L~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlD-PGid~~ 712 (1042)
T PLN02819 635 DVSDSESLLKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLD-PGIDHM 712 (1042)
T ss_pred ecCCHHHHHHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccC-HHHHHH
Confidence 232445554 4799999999763 45544443 355677776211112333466688999999988743 34433
Q ss_pred HHHHHH
Q psy14499 197 SYFEWV 202 (262)
Q Consensus 197 s~~E~~ 202 (262)
...+++
T Consensus 713 lA~~~I 718 (1042)
T PLN02819 713 MAMKMI 718 (1042)
T ss_pred HHHHHH
Confidence 334444
No 159
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.35 E-value=0.015 Score=53.53 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHH-HHHHHHhcCCccCCCCceecCCCccccc--
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPK-LQKYVTFTRSIKDFNEGEKINDSKEFWS-- 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~-l~~~~~~~g~~~~~~~~~~~~~~~~il~-- 132 (262)
+..+|+|+|.|++|+..+..|.+ .+..+++++| +|++. -++..++.|--.. .++.++++.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvd----------id~es~gla~A~~~Gi~~~------~~~ie~LL~~~ 66 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVG----------IDPESDGLARARRLGVATS------AEGIDGLLAMP 66 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEe----------CChhhHHHHHHHHcCCCcc------cCCHHHHHhCc
Confidence 56899999999999987766654 5799999999 67653 2233333331111 121344553
Q ss_pred --cCceEEeeCCccCcccccchhcc---CceEEEec--CCCCC
Q psy14499 133 --IPCDILIPAAIEDQITINNANNV---TAKIILEG--ANGPT 168 (262)
Q Consensus 133 --~~~DIlipaa~~~~it~e~a~~~---~~kiIve~--AN~p~ 168 (262)
.++|+++.|++. ..+.+.+... .+.+|.+. +++|+
T Consensus 67 ~~~dIDiVf~AT~a-~~H~e~a~~a~eaGk~VID~sPA~~~Pl 108 (302)
T PRK08300 67 EFDDIDIVFDATSA-GAHVRHAAKLREAGIRAIDLTPAAIGPY 108 (302)
T ss_pred CCCCCCEEEECCCH-HHHHHHHHHHHHcCCeEEECCccccCCc
Confidence 479999999964 4566666655 44455543 35565
No 160
>PRK08223 hypothetical protein; Validated
Probab=96.35 E-value=0.004 Score=56.96 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+..+|+|+|+|.+|..+++.|...|..-+.+.|.
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 368899999999999999999999999877778884
No 161
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.35 E-value=0.17 Score=48.63 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=28.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-++|+|+|.|.||..+|..|.+.|..|+ +.|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~-~~D 33 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVI-GVD 33 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEE-EEe
Confidence 4789999999999999999999999988 556
No 162
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.33 E-value=0.0041 Score=55.15 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+..+|+|+|.|.||..+++.|.+.|..-+.+.|.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~ 43 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF 43 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 57889999999999999999999999755557774
No 163
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.31 E-value=0.014 Score=48.96 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=39.4
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.-.+.|..|+.. ++++.+.+++|++++|+|-++ ||+-++.+|.+.|++|. ++++
T Consensus 14 ~~~PcTp~aii~----lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~ 68 (160)
T PF02882_consen 14 GFVPCTPLAIIE----LLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHS 68 (160)
T ss_dssp SS--HHHHHHHH----HHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-T
T ss_pred CCcCCCHHHHHH----HHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccC
Confidence 456688887754 555678999999999999975 99999999999999988 7774
No 164
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.28 E-value=0.02 Score=54.54 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=70.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-----C---CCcee-cC-CCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-----F---NEGEK-IN-DSK 128 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-----~---~~~~~-~~-~~~ 128 (262)
++|+|+|.|.||..+|..|. .|+.|+ +.| +|.+++.++.+..-.+.+ + ..... .+ +..
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD----------~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~ 68 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVV-ALD----------ILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKN 68 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEE-EEE----------CCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchh
Confidence 37999999999999997776 499988 677 677776665542111100 0 00111 11 012
Q ss_pred cccccCceEEeeCCccCcccc-------cch-------hcc-CceEEE-ecCCCCC-CHHHHHHHHHCCCeEecccccc
Q psy14499 129 EFWSIPCDILIPAAIEDQITI-------NNA-------NNV-TAKIIL-EGANGPT-TTEADDILRDKGIILAPDVITN 190 (262)
Q Consensus 129 ~il~~~~DIlipaa~~~~it~-------e~a-------~~~-~~kiIv-e~AN~p~-t~ea~~~l~~rgi~~iPD~~aN 190 (262)
+.. .+||++|.|-++.. +. +.+ .++ +.++|+ ++.=.|- |.+..+.+.++|+.+-|.++..
T Consensus 69 ~~~-~~ad~vii~Vpt~~-~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~ 145 (388)
T PRK15057 69 EAY-RDADYVIIATPTDY-DPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLRE 145 (388)
T ss_pred hhh-cCCCEEEEeCCCCC-ccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccC
Confidence 222 58999999987652 21 111 112 234444 4444443 5566677788899999998753
No 165
>PLN02858 fructose-bisphosphate aldolase
Probab=96.27 E-value=0.14 Score=56.26 Aligned_cols=171 Identities=15% Similarity=0.199 Sum_probs=102.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
...+|.++|+|++|..+|+.|.+.|+.+. +.| .+.++..++.+.. +...+++.++. .+||
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~-v~d----------r~~~~~~~l~~~G--------a~~~~s~~e~a-~~ad 62 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQ-AFE----------ISTPLMEKFCELG--------GHRCDSPAEAA-KDAA 62 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHcC--------CeecCCHHHHH-hcCC
Confidence 35689999999999999999999999987 777 5677776666542 33333244444 4799
Q ss_pred EEeeCCccCcccccc-------hhcc-CceEEEecCCC-CC-CHHHHHHHHHCC--CeEeccccccchhhHH--------
Q psy14499 137 ILIPAAIEDQITINN-------ANNV-TAKIILEGANG-PT-TTEADDILRDKG--IILAPDVITNAGGVIV-------- 196 (262)
Q Consensus 137 Ilipaa~~~~it~e~-------a~~~-~~kiIve~AN~-p~-t~ea~~~l~~rg--i~~iPD~~aN~GGvi~-------- 196 (262)
++|-|-+......+. +..+ ..++|++-.-. |- +.+..+.+.++| +.++=-.+. ||+..
T Consensus 63 vVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVs--Gg~~~A~~G~L~i 140 (1378)
T PLN02858 63 ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVS--KGMSDLLNGKLMI 140 (1378)
T ss_pred EEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCc--CCHHHHhcCCeEE
Confidence 999876543222211 2233 34577766544 32 566678889999 877743333 33211
Q ss_pred ------HHHH----HHhhhcC-CC-C----CHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14499 197 ------SYFE----WVQNLSN-LL-W----TEQE----INLRLNNIICNAFDAIWELANTKKVSLRTAAFIIG 249 (262)
Q Consensus 197 ------s~~E----~~~~~~~-~~-~----~~~~----v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a 249 (262)
..+| +++.... .. . ..-. +...+...+-..+.+.+..+++.|+++.....++.
T Consensus 141 mvGG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~ 213 (1378)
T PLN02858 141 IASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIIS 213 (1378)
T ss_pred EEcCCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 1111 1111111 11 1 1112 23333444445677888889999999987776654
No 166
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.27 E-value=0.089 Score=45.70 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++|+|+|.|.||..-++.|.+.|++|+ |.+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~Vt-Vvs 39 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLR-VIA 39 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEE-EEc
Confidence 36889999999999999999999999999988 554
No 167
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.23 E-value=0.022 Score=43.97 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=63.2
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc-c---cCce
Q psy14499 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-S---IPCD 136 (262)
Q Consensus 61 v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~---~~~D 136 (262)
|+|.|+|.+|+.+++.|.+.+.+++ +.| .|++...+..++.-.+- +.+. . ..+.| + .++|
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vv-vid----------~d~~~~~~~~~~~~~~i-~gd~--~--~~~~l~~a~i~~a~ 64 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVV-VID----------RDPERVEELREEGVEVI-YGDA--T--DPEVLERAGIEKAD 64 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEE-EEE----------SSHHHHHHHHHTTSEEE-ES-T--T--SHHHHHHTTGGCES
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEE-EEE----------CCcHHHHHHHhcccccc-cccc--h--hhhHHhhcCccccC
Confidence 6899999999999999999777888 666 47887777665431110 0011 1 11222 1 4788
Q ss_pred EEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 137 ILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 137 Ilipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
.++-++..+..|- ..++++ ..++|+..- +++..+.|++-|+..
T Consensus 65 ~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 65 AVVILTDDDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGADH 112 (116)
T ss_dssp EEEEESSSHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-SE
T ss_pred EEEEccCCHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcCE
Confidence 8888877554443 344443 356666544 366667788877654
No 168
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.22 E-value=0.012 Score=50.91 Aligned_cols=84 Identities=20% Similarity=0.282 Sum_probs=53.1
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++++++|+|+|.|.||...++.|.+.|++|+ |.+. + ++ +++.++.+. +.+.-. ...+. ... + .
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~-VIs~-------~-~~-~~l~~l~~~-~~i~~~--~~~~~-~~~-l-~ 69 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIV-VISP-------E-LT-ENLVKLVEE-GKIRWK--QKEFE-PSD-I-V 69 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEcC-------C-CC-HHHHHHHhC-CCEEEE--ecCCC-hhh-c-C
Confidence 46899999999999999999999999999988 4432 1 22 233343332 222110 00111 112 2 4
Q ss_pred CceEEeeCCccCcccccchh
Q psy14499 134 PCDILIPAAIEDQITINNAN 153 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~ 153 (262)
++|++|-|+....+|...+.
T Consensus 70 ~adlViaaT~d~elN~~i~~ 89 (202)
T PRK06718 70 DAFLVIAATNDPRVNEQVKE 89 (202)
T ss_pred CceEEEEcCCCHHHHHHHHH
Confidence 78999999877766654443
No 169
>KOG1257|consensus
Probab=96.21 E-value=0.024 Score=55.36 Aligned_cols=126 Identities=20% Similarity=0.134 Sum_probs=90.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH----CC-------CEEEEEeCCCceeeCCC--
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AG-------AKIVAIQDDKTTIYNPN-- 98 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~----~g-------~~vv~V~D~~G~i~~~~-- 98 (262)
+--+.||--+.+++..++|..|.++++.+|++.|.|..|.++|+++.. .| -++- +.|++|-|....
T Consensus 284 DDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIw-lvD~~GLi~~~r~~ 362 (582)
T KOG1257|consen 284 DDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIW-LVDSKGLITKGRKA 362 (582)
T ss_pred ccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEE-EEecCceeeccccC
Confidence 446789999999999999999999999999999999999999988753 34 2444 889998887643
Q ss_pred CCCHHHHHHHHHhcCCccCCCCceecCCCcc-ccccCceEEeeCCc-cCcccccchhcc---C-ceEEEecCCCCC
Q psy14499 99 GFNIPKLQKYVTFTRSIKDFNEGEKINDSKE-FWSIPCDILIPAAI-EDQITINNANNV---T-AKIILEGANGPT 168 (262)
Q Consensus 99 GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~-il~~~~DIlipaa~-~~~it~e~a~~~---~-~kiIve~AN~p~ 168 (262)
.++..+. .+.++ .+.+.+..+ +-.++..|||.||. ++..|++..+.+ . -.+|+.-.|-..
T Consensus 363 ~l~~~~~-~fAk~---------~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT~ 428 (582)
T KOG1257|consen 363 SLTEEKK-PFAKD---------HEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNPTS 428 (582)
T ss_pred CCChhhc-ccccc---------ChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCCcc
Confidence 4544331 11111 111111333 34689999999985 799999887776 3 348888888653
No 170
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.20 E-value=0.066 Score=52.53 Aligned_cols=76 Identities=17% Similarity=0.051 Sum_probs=47.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH-------hcCCccC--C--CC-ceecCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT-------FTRSIKD--F--NE-GEKIND 126 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~-------~~g~~~~--~--~~-~~~~~~ 126 (262)
++|+|+|.|++|...|..|...|..|+ +.| .+++++.+..+ ..+.+.. + .+ .+..++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~-v~D----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVA-VFD----------PHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEe----------CCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 489999999999999999999999987 777 35554433211 0111110 0 01 122222
Q ss_pred CccccccCceEEeeCCccCc
Q psy14499 127 SKEFWSIPCDILIPAAIEDQ 146 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~ 146 (262)
..+.+ .+||++++|.+++.
T Consensus 74 ~~ea~-~~aD~Vieavpe~~ 92 (495)
T PRK07531 74 LAEAV-AGADWIQESVPERL 92 (495)
T ss_pred HHHHh-cCCCEEEEcCcCCH
Confidence 33333 58999999988774
No 171
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.20 E-value=0.024 Score=50.52 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=54.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC----EEEEEe-CCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA----KIVAIQ-DDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~----~vv~V~-D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
++|.++|+|++|..+++.|.+.|. .++ ++ | .+.++...+.+ .| ....++..++. .
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~-v~~~----------r~~~~~~~~~~-~g-------~~~~~~~~e~~-~ 60 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRIS-TADD----------SNPARRDVFQS-LG-------VKTAASNTEVV-K 60 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEE-EEeC----------CCHHHHHHHHH-cC-------CEEeCChHHHH-h
Confidence 479999999999999999999887 665 54 5 34555444332 22 22222233444 4
Q ss_pred CceEEeeCCccCcccccch----hcc-CceEEEecCCCCCCHHH
Q psy14499 134 PCDILIPAAIEDQITINNA----NNV-TAKIILEGANGPTTTEA 172 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a----~~~-~~kiIve~AN~p~t~ea 172 (262)
+||++|.|.....+ .+.. +.+ +.++|+.-.++ ++.+.
T Consensus 61 ~aDvVil~v~~~~~-~~vl~~l~~~~~~~~~iIs~~~g-~~~~~ 102 (266)
T PLN02688 61 SSDVIILAVKPQVV-KDVLTELRPLLSKDKLLVSVAAG-ITLAD 102 (266)
T ss_pred cCCEEEEEECcHHH-HHHHHHHHhhcCCCCEEEEecCC-CcHHH
Confidence 89999999854322 2222 222 34567765554 34443
No 172
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=96.18 E-value=0.09 Score=49.21 Aligned_cols=96 Identities=15% Similarity=0.298 Sum_probs=57.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHHHHHHHH---HhcCCccC---CC------Cce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQKYV---TFTRSIKD---FN------EGE 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~GlD~~~l~~~~---~~~g~~~~---~~------~~~ 122 (262)
.||+|.|||.||+.+.|.|.+. ..++++|-|. .|++.+.-+. ..+|.+.. .. +.+
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~---------~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~ 72 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL---------ADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDD 72 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCE
Confidence 4899999999999999999873 5889988773 3444432222 23333221 00 111
Q ss_pred ---ec--CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 123 ---KI--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 123 ---~~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.. .+++++ | +.++|++++|+... .+.+.++.. .|| +++.++
T Consensus 73 ~i~v~~~~~p~~~~w~~~gvDiVle~tG~~-~s~~~a~~~l~aGAk~V~iSap 124 (336)
T PRK13535 73 AIRLLHERDIASLPWRELGVDVVLDCTGVY-GSREDGEAHIAAGAKKVLFSHP 124 (336)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEccchh-hhHHHHHHHHHcCCEEEEecCC
Confidence 11 023332 3 47999999999654 566665544 455 555544
No 173
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.17 E-value=0.012 Score=54.82 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++|+|+|+|++|+++|+.|.+.|.+|+ +.+
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vv-v~~ 47 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVV-VGL 47 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEE-EEE
Confidence 4789999999999999999999999999887 443
No 174
>PLN02858 fructose-bisphosphate aldolase
Probab=96.15 E-value=0.2 Score=54.95 Aligned_cols=169 Identities=17% Similarity=0.167 Sum_probs=98.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
.++|.++|+|++|..+|+.|...|++|+ +.| .+.+++.++.+.. +...+++.++. .+||+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~G--------a~~~~s~~e~~-~~aDv 383 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVC-GYD----------VYKPTLVRFENAG--------GLAGNSPAEVA-KDVDV 383 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHcC--------CeecCCHHHHH-hcCCE
Confidence 4789999999999999999999999887 666 5666665554431 22222233444 58999
Q ss_pred EeeCCccC-----cccc--cchhcc-CceEEEecCCCCC--CHHHHHHHHH--CCCeEeccccccchhhHH---------
Q psy14499 138 LIPAAIED-----QITI--NNANNV-TAKIILEGANGPT--TTEADDILRD--KGIILAPDVITNAGGVIV--------- 196 (262)
Q Consensus 138 lipaa~~~-----~it~--e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~--rgi~~iPD~~aN~GGvi~--------- 196 (262)
++-|-... ++.+ .....+ ..++|++-..... +.+..+.+++ +|+.++=..+. ||...
T Consensus 384 Vi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVs--Gg~~~A~~G~L~im 461 (1378)
T PLN02858 384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVS--GGVKRAAMGTLTIM 461 (1378)
T ss_pred EEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCC--CChhhhhcCCceEE
Confidence 99876632 2211 122233 3457776655432 4556677788 89988843332 33210
Q ss_pred -----HHHH----HHhhhcC-CCC-----CHHHHHH----HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy14499 197 -----SYFE----WVQNLSN-LLW-----TEQEINL----RLNNIICNAFDAIWELANTKKVSLRTAAFII 248 (262)
Q Consensus 197 -----s~~E----~~~~~~~-~~~-----~~~~v~~----~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~ 248 (262)
..++ +++.... .++ ..-+... .+....-..+.+.+..+++.|+++.+...++
T Consensus 462 vgG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 462 ASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred EECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 1122 2222111 111 1122222 2333334556778888899999987766544
No 175
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.14 E-value=0.037 Score=52.96 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=72.2
Q ss_pred HHHHHHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC-CCce
Q psy14499 45 GSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF-NEGE 122 (262)
Q Consensus 45 ~~~~~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~-~~~~ 122 (262)
++.+.+.++. ++..++++|+|+|.+|+.+++.|.+.|..++ +.| .|++.+.++.++...+.-+ -+..
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid----------~~~~~~~~~~~~~~~~~~i~gd~~ 285 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIE----------RDPERAEELAEELPNTLVLHGDGT 285 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEE----------CCHHHHHHHHHHCCCCeEEECCCC
Confidence 4444454544 5678999999999999999999999999988 666 5777776666543111100 0110
Q ss_pred ecCCCccc---cccCceEEeeCCccCccc---ccchhccC-ceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 123 KINDSKEF---WSIPCDILIPAAIEDQIT---INNANNVT-AKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 123 ~~~~~~~i---l~~~~DIlipaa~~~~it---~e~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
+ .+.+ --.++|.++-++..+..| ...++.+. .++|+... +++-.+.|+..|+..
T Consensus 286 --~-~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~----~~~~~~~~~~~g~~~ 346 (453)
T PRK09496 286 --D-QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVN----RPAYVDLVEGLGIDI 346 (453)
T ss_pred --C-HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEEC----CcchHHHHHhcCCCE
Confidence 1 1112 124789988776543322 23344443 34555443 334456678888744
No 176
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.13 E-value=0.022 Score=50.68 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+++.+|+|+|.|.+|..+++.|.+.|..-+.+.|.
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF 56 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 367899999999999999999999999877768874
No 177
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.12 E-value=0.019 Score=53.68 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|++++|+|+|.|.+|..+|+.|.+.|..-+.+.|.+
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4688999999999999999999999998666688864
No 178
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.12 E-value=0.051 Score=49.70 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCHHHH-HHHHHHHHCC--CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 57 INSKISIQGFGNVGS-VAANLFFKAG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~-~~a~~L~~~g--~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
+.+||+|+|+|+.+. ..+..+.+.+ +.+++++| .|++++.+..++.+-- ..+++.++++..
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d----------~~~~~a~~~a~~~~~~------~~~~~~~~ll~~ 65 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVD----------RDPERAEAFAEEFGIA------KAYTDLEELLAD 65 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEec----------CCHHHHHHHHHHcCCC------cccCCHHHHhcC
Confidence 467999999997664 5777777765 69999999 7888888887765421 233335667754
Q ss_pred -CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEecc
Q psy14499 134 -PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPD 186 (262)
Q Consensus 134 -~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD 186 (262)
+.|+++=|++ +..+.+.+..- ...++||=.=.....|++ +.-+++|+.+...
T Consensus 66 ~~iD~V~Iatp-~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~ 124 (342)
T COG0673 66 PDIDAVYIATP-NALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVG 124 (342)
T ss_pred CCCCEEEEcCC-ChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence 4899888886 44455544332 455777754444445554 3335567666533
No 179
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.11 E-value=0.019 Score=52.46 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=45.2
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-.+.|..||. +++++.+.+++|++|+|+|- |.||+-++.+|.+.|+.|+ ++.
T Consensus 137 ~~PcTp~avi----~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~ 189 (284)
T PRK14179 137 MIPCTPAGIM----EMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTH 189 (284)
T ss_pred CcCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EEC
Confidence 4678998874 45667799999999999999 9999999999999999987 664
No 180
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.11 E-value=0.084 Score=48.90 Aligned_cols=139 Identities=12% Similarity=0.065 Sum_probs=80.2
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
...|++=...+---+.+++... ..++++|+|.|..|+..++.+.. .+++-|.|.| .++++..++.++.
T Consensus 104 ~~lT~~RTaa~sala~~~la~~-~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~----------r~~~~a~~~~~~~ 172 (325)
T PRK08618 104 TYLTQIRTGALSGVATKYLARE-DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYS----------RTFEKAYAFAQEI 172 (325)
T ss_pred chhhhhhHHHHHHHHHHHhcCC-CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEEC----------CCHHHHHHHHHHH
Confidence 3445443333333334555432 67799999999999999887754 6888888888 4666655554422
Q ss_pred CCccCCC-CceecCCCccccccCceEEeeCCccC--cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecccc
Q psy14499 113 RSIKDFN-EGEKINDSKEFWSIPCDILIPAAIED--QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 113 g~~~~~~-~~~~~~~~~~il~~~~DIlipaa~~~--~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~ 188 (262)
.. .++ ....+++.++.+ .++||++-|++.. +++ +-. +-.+.++.=|++.|--.|....+.++.-.++-|..
T Consensus 173 ~~--~~~~~~~~~~~~~~~~-~~aDiVi~aT~s~~p~i~-~~l-~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~~ 246 (325)
T PRK08618 173 QS--KFNTEIYVVNSADEAI-EEADIIVTVTNAKTPVFS-EKL-KKGVHINAVGSFMPDMQELPSEAIARANKVVVESK 246 (325)
T ss_pred HH--hcCCcEEEeCCHHHHH-hcCCEEEEccCCCCcchH-Hhc-CCCcEEEecCCCCcccccCCHHHHhhCCEEEECCH
Confidence 10 011 112233234444 5899999998753 222 211 22466778888888655554444444433444543
No 181
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.10 E-value=0.022 Score=51.61 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=27.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|.+.|..|+ +.|
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d 31 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVD 31 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEe
Confidence 479999999999999999999999988 777
No 182
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.09 E-value=0.0096 Score=53.12 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|+..+|+|+|.|.+|..+++.|...|..-+.+.|.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4688999999999999999999999998666688853
No 183
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.07 E-value=0.025 Score=52.02 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-.++|..||.. ++++.+.+++|++|+|+| .|.||+.+|.+|.+.|+.|+ +++
T Consensus 137 ~~PcTp~ai~~----ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~ 189 (296)
T PRK14188 137 LVPCTPLGCMM----LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAH 189 (296)
T ss_pred CcCCCHHHHHH----HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EEC
Confidence 46789888754 556678899999999999 99999999999999999988 775
No 184
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.05 E-value=0.018 Score=54.84 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=79.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccCC-CCceecCCCccccccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDF-NEGEKINDSKEFWSIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g-~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~~-~~~~~~~~~~~il~~~~ 135 (262)
++|+|+|.|.||+.+|..|.+.| .+|+ |+| -..+++.+..+..+. +.-. .++...+...+++ .+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAd----------Rs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li-~~~ 69 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IAD----------RSKEKCARIAELIGGKVEALQVDAADVDALVALI-KDF 69 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEE-EEe----------CCHHHHHHHHhhccccceeEEecccChHHHHHHH-hcC
Confidence 58999999999999999999988 7877 888 466777676554321 1100 0111111012344 466
Q ss_pred eEEeeCCccCcccccchhc-cC-ceEEEecCCCCCC-HHHHHHHHHCCCeEeccccccchhhHHHHHHH
Q psy14499 136 DILIPAAIEDQITINNANN-VT-AKIILEGANGPTT-TEADDILRDKGIILAPDVITNAGGVIVSYFEW 201 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~-~~-~kiIve~AN~p~t-~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~ 201 (262)
|++|-|++..+ +....+. ++ -..+++-+|..-. -+.++..++.|+..+|+.=. +-|++..+...
T Consensus 70 d~VIn~~p~~~-~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~-dPGi~nv~a~~ 136 (389)
T COG1748 70 DLVINAAPPFV-DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGF-DPGITNVLAAY 136 (389)
T ss_pred CEEEEeCCchh-hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCc-CcchHHHHHHH
Confidence 99999997643 3222222 12 2356666666543 44567778999999988643 34666555443
No 185
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.02 E-value=0.016 Score=48.75 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 92 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G 92 (262)
|++++|+|+|||+-|.+.|..|++.|..|+ |....+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~~ 37 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLREG 37 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-TT
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecCC
Confidence 478999999999999999999999999988 766433
No 186
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.02 E-value=0.097 Score=48.58 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=82.8
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+-...|++=....---+.+++..+ .-+++.|+|.|..|+..++.|.. ...+-|.|.| .+.++..++.+
T Consensus 103 d~~~lT~~RTaA~salaa~~La~~-~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~----------r~~~~~~~~~~ 171 (325)
T TIGR02371 103 DGTYITDMRTGAAGGVAAKYLARK-DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC----------RTPSTREKFAL 171 (325)
T ss_pred eCcchhhHHHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC----------CCHHHHHHHHH
Confidence 334445443333323334555432 56899999999999998887765 3455565777 56776655544
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecccc
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~ 188 (262)
+.... + ......++.++.. .++||++-|++. -+++.+.. +-.+.+..=|++.|-..|.+..+.++.- ++.|..
T Consensus 172 ~~~~~-g-~~v~~~~~~~eav-~~aDiVitaT~s~~P~~~~~~l-~~g~~v~~vGs~~p~~~Eld~~~l~~a~-v~vD~~ 246 (325)
T TIGR02371 172 RASDY-E-VPVRAATDPREAV-EGCDILVTTTPSRKPVVKADWV-SEGTHINAIGADAPGKQELDPEILKNAK-IFVDDL 246 (325)
T ss_pred HHHhh-C-CcEEEeCCHHHHh-ccCCEEEEecCCCCcEecHHHc-CCCCEEEecCCCCcccccCCHHHHhcCc-EEECCH
Confidence 32211 1 0122333355555 599999999864 22333322 2256688888998876666555555543 445654
Q ss_pred c
Q psy14499 189 T 189 (262)
Q Consensus 189 a 189 (262)
.
T Consensus 247 ~ 247 (325)
T TIGR02371 247 E 247 (325)
T ss_pred H
Confidence 3
No 187
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.01 E-value=0.017 Score=50.78 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+..+|+|+|+|.+|..+++.|...|..-+.+.|.
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 468899999999999999999999999877778885
No 188
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=95.99 E-value=0.13 Score=48.04 Aligned_cols=96 Identities=24% Similarity=0.420 Sum_probs=58.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHH---HhcCCccCC---C------Ccee--
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYV---TFTRSIKDF---N------EGEK-- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~---~~~g~~~~~---~------~~~~-- 123 (262)
.||+|.|||.+|+.+.|.+.+ ....||+|-|. .|++.+.-+. ..+|.+..- . +.+.
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~---------~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~ 73 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC---------CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEE
Confidence 589999999999999999764 47999999873 3444432222 233433210 0 1111
Q ss_pred cC---CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 124 IN---DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 124 ~~---~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
+. +++++ | +.++|++++|+.. ..+.+.+... .|| ++..++
T Consensus 74 v~~~~dp~~~~w~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSap 122 (331)
T PRK15425 74 VTAERDPANLKWDEVGVDVVAEATGL-FLTDETARKHITAGAKKVVMTGP 122 (331)
T ss_pred EEEcCChhhCcccccCCCEEEEecch-hhcHHHHHHHHHCCCEEEEeCCC
Confidence 11 23332 3 4699999999964 4666666554 566 444544
No 189
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.99 E-value=0.024 Score=56.28 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=65.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc----ccC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW----SIP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il----~~~ 134 (262)
-+++|.|+|++|+.+++.|.+.|..++ +.| -|++++.+.++..-.. -+-+++ ..+.+ -.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId----------~d~~~~~~~~~~g~~~-i~GD~~----~~~~L~~a~i~~ 481 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIE----------TSRTRVDELRERGIRA-VLGNAA----NEEIMQLAHLDC 481 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEE----------CCHHHHHHHHHCCCeE-EEcCCC----CHHHHHhcCccc
Confidence 578999999999999999999999988 777 5788777665431110 000111 12222 147
Q ss_pred ceEEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
+|.++-+...+..+- ..+++. .+++|+-.. +++..+.|++-|+..+
T Consensus 482 a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad~v 532 (558)
T PRK10669 482 ARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAH----YDDEVAYITERGANQV 532 (558)
T ss_pred cCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHcCCCEE
Confidence 887776665433222 112222 355666432 4677788888887654
No 190
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=95.98 E-value=0.11 Score=48.47 Aligned_cols=95 Identities=21% Similarity=0.421 Sum_probs=56.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---CC-------Cce-
Q psy14499 60 KISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---FN-------EGE- 122 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~~-------~~~- 122 (262)
||+|.|||.+|+.+.|.+.+. ..++|+|-|. .|++.+.-+.+ .+|.+.. +. +.+
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~ 71 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL---------TDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKF 71 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC---------CCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeE
Confidence 689999999999999998764 6899999883 35554433332 2333211 00 112
Q ss_pred ec--C---CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 123 KI--N---DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 123 ~~--~---~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.+ . +++++ | +.++|++++|+.. ..+.+.+... .|| ++..++
T Consensus 72 ~i~v~~~~dp~~~~w~~~gvDiVle~tG~-~~s~~~a~~hl~~Gak~V~iSap 123 (327)
T TIGR01534 72 VIVVASERDPSDLPWKALGVDIVIECTGK-FRDKEKLEGHLEAGAKKVLISAP 123 (327)
T ss_pred EEEEEecCCcccCchhhcCCCEEEEccch-hhcHHHHHHHhhCCCEEEEeCCC
Confidence 11 1 13332 3 4589999999964 3566655543 566 444444
No 191
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.97 E-value=0.029 Score=46.33 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=57.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCce-----ec-CCCcccccc
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE-----KI-NDSKEFWSI 133 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~-----~~-~~~~~il~~ 133 (262)
+|+|+|.|+.|.++|..|.+.|..|. +.+ .|.+.+..+.+.+.....+|+.+ .+ +|.++.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~-l~~----------~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVT-LWG----------RDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEE-EET----------SCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-T
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEE-EEe----------ccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-C
Confidence 68999999999999999999998877 655 35566666665544333344321 12 2233344 4
Q ss_pred CceEEeeCCccCcccccchhcc-----CceEEEecCCCC
Q psy14499 134 PCDILIPAAIEDQITINNANNV-----TAKIILEGANGP 167 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~p 167 (262)
++|+++-+.+.... .+..+++ +.+.|+-...+-
T Consensus 69 ~ad~IiiavPs~~~-~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 69 DADIIIIAVPSQAH-REVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp T-SEEEE-S-GGGH-HHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cccEEEecccHHHH-HHHHHHHhhccCCCCEEEEecCCc
Confidence 89999998877655 3444443 334555555553
No 192
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.96 E-value=0.18 Score=48.18 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=27.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.||..+|..|.+.|++|+ +.|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~-~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVT-GVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEE-EEE
Confidence 379999999999999999999999988 556
No 193
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.95 E-value=0.14 Score=49.27 Aligned_cols=97 Identities=20% Similarity=0.420 Sum_probs=58.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHH---HhcCCccC---C-C------Ccee-
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYV---TFTRSIKD---F-N------EGEK- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~---~~~g~~~~---~-~------~~~~- 123 (262)
.||.|.|||.+|+.++|.+.+ .+.+||+|-|.. .|++.+.-+. -.+|.+.+ + . +.+.
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~--------~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I 157 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF--------IDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQI 157 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC--------CCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEE
Confidence 499999999999999999875 789999887732 3444432222 23343321 0 0 1111
Q ss_pred -cC---CCccc-c-ccCceEEeeCCccCcccccchhcc---Cc-eEEEecC
Q psy14499 124 -IN---DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TA-KIILEGA 164 (262)
Q Consensus 124 -~~---~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~-kiIve~A 164 (262)
+. ++.++ | +.++|++++|+.. ..+.+.+... .| |+|+.+.
T Consensus 158 ~V~~~~dp~~~~w~~~gVDiVlesTG~-f~s~e~a~~hl~aGAkkVVIdap 207 (421)
T PLN02272 158 KVTSKRDPAEIPWGDFGAEYVVESSGV-FTTVEKASAHLKGGAKKVVISAP 207 (421)
T ss_pred EEEecCCcccCcccccCCCEEEEcCch-hccHHHHHHHhhCCCCEEEECCC
Confidence 11 13332 3 3589999999964 3555555543 45 4777765
No 194
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.92 E-value=0.013 Score=55.56 Aligned_cols=88 Identities=16% Similarity=0.302 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC---------ceeeCCCCCCHHHHHHHHHhcCCccCCCCce---
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK---------TTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE--- 122 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~---------G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~--- 122 (262)
.++..+|+|+|.|.+|..+++.|...|..-+.+.|.+ -.+|+++-+...+....+++-..+......+
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 4788999999999999999999999998666688854 3455555444444444443322222111111
Q ss_pred -ecC--CCccccccCceEEeeCCc
Q psy14499 123 -KIN--DSKEFWSIPCDILIPAAI 143 (262)
Q Consensus 123 -~~~--~~~~il~~~~DIlipaa~ 143 (262)
.++ +..+++ .++|++|.|+-
T Consensus 118 ~~i~~~~~~~~~-~~~DlVid~~D 140 (370)
T PRK05600 118 ERLTAENAVELL-NGVDLVLDGSD 140 (370)
T ss_pred eecCHHHHHHHH-hCCCEEEECCC
Confidence 122 011233 47999999985
No 195
>PLN02712 arogenate dehydrogenase
Probab=95.90 E-value=0.023 Score=57.73 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=65.1
Q ss_pred HhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 51 KINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 51 ~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
..+.+++.++|+|+|+|.+|+.+|+.|.+.|.+|+ +.|. +... +...+.| ....++.+++
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~-~~dr----------~~~~--~~a~~~G-------v~~~~~~~el 421 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVL-AYSR----------SDYS--DEAQKLG-------VSYFSDADDL 421 (667)
T ss_pred hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEE-EEEC----------ChHH--HHHHHcC-------CeEeCCHHHH
Confidence 34667899999999999999999999999999887 5452 1111 1111222 1122223444
Q ss_pred cccCceEEeeCCccCcccccchh-----ccC-ceEEEecCCCCC-CHHHHHHHHHCCCeEe
Q psy14499 131 WSIPCDILIPAAIEDQITINNAN-----NVT-AKIILEGANGPT-TTEADDILRDKGIILA 184 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it~e~a~-----~~~-~kiIve~AN~p~-t~ea~~~l~~rgi~~i 184 (262)
...++|++|-|.+... +.+.+. .++ ..+|++-+..-. .-++.+.+...|+.++
T Consensus 422 ~~~~aDvVILavP~~~-~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v 481 (667)
T PLN02712 422 CEEHPEVILLCTSILS-TEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDIL 481 (667)
T ss_pred HhcCCCEEEECCChHH-HHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceE
Confidence 4346899999977432 222222 232 357777765532 2222233334455555
No 196
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=95.88 E-value=0.051 Score=50.57 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~ 90 (262)
+..||+|+|+|++|+..++.+.+. +..+++|+|+
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr 36 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSR 36 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcC
Confidence 358999999999999999999764 8999999994
No 197
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.87 E-value=0.11 Score=50.43 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=34.4
Q ss_pred HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 50 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 50 ~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+.+.++++++|+|+|.|.+|..+|+.|.+.|.+|+ ++|.
T Consensus 8 ~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~ 47 (480)
T PRK01438 8 TSWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDD 47 (480)
T ss_pred hhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 345667789999999999999999999999999977 6663
No 198
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.87 E-value=0.021 Score=49.92 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|+..+|+|+|.|.+|..+++.|.+.|..-+.+.|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4789999999999999999999999998756588853
No 199
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.012 Score=51.78 Aligned_cols=112 Identities=19% Similarity=0.322 Sum_probs=68.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH-hcCC--ccCCCCceecCCCccccc---
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT-FTRS--IKDFNEGEKINDSKEFWS--- 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~-~~g~--~~~~~~~~~~~~~~~il~--- 132 (262)
++|+|+|.|.+|+.+|+.|.+.|..|+ +.| -|.+.+.+... +... +.+ +++ + .+.+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv-~Id----------~d~~~~~~~~~~~~~~~~v~g--d~t--~-~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVV-LID----------RDEERVEEFLADELDTHVVIG--DAT--D-EDVLEEAGI 64 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceE-EEE----------cCHHHHHHHhhhhcceEEEEe--cCC--C-HHHHHhcCC
Confidence 589999999999999999999999999 445 37777666433 2111 100 111 0 111222
Q ss_pred cCceEEeeCCccCcccc---cchhc-cCceEEEecCCCCCCHHHHHHHHHCC--CeEeccccc
Q psy14499 133 IPCDILIPAAIEDQITI---NNANN-VTAKIILEGANGPTTTEADDILRDKG--IILAPDVIT 189 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~---e~a~~-~~~kiIve~AN~p~t~ea~~~l~~rg--i~~iPD~~a 189 (262)
.++|+++-++..+..|- ..+.+ +..+-|+.=++ +++-.+.|++-| ..+.|...+
T Consensus 65 ~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~---~~~~~~~~~~~g~~~ii~Pe~~~ 124 (225)
T COG0569 65 DDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR---NPEHEKVLEKLGADVIISPEKLA 124 (225)
T ss_pred CcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec---CHHHHHHHHHcCCcEEECHHHHH
Confidence 48999999998766553 33333 34443333332 455567777777 344455544
No 200
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.84 E-value=0.018 Score=52.16 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|++.+|+|+|.|.||..+++.|.+.|..-+.+.|.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4788999999999999999999999996555588854
No 201
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.84 E-value=0.026 Score=52.76 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|+..+|+|+|.|.+|..+++.|.+.|..-+.+.|.+
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678999999999999999999999998556688853
No 202
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.77 E-value=0.089 Score=48.16 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=43.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHH----CCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFK----AGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~----~g~~vv~V~D~ 90 (262)
-.+.|..||. +++++.+.+++|++++|+|=++ ||+-++.+|.+ .+++|+ ++++
T Consensus 136 ~~PcTp~av~----~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs 193 (286)
T PRK14184 136 FRPCTPAGVM----TLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHS 193 (286)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeC
Confidence 3578888774 5667779999999999999755 89999999998 789987 7664
No 203
>PRK06153 hypothetical protein; Provisional
Probab=95.77 E-value=0.004 Score=59.10 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|++.+|+|+|+|.+|+.+++.|.+.|..=+.+.|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 578999999999999999999999999866658774
No 204
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.75 E-value=0.048 Score=44.69 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.|..++ .+++++.|.+++|++|.|.|= ..||+-++.+|.+.|+.+. ++++
T Consensus 9 p~t~~a~----~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~ 60 (140)
T cd05212 9 SPVAKAV----KELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDW 60 (140)
T ss_pred ccHHHHH----HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCC
Confidence 4565555 556677899999999999997 5599999999999999988 7774
No 205
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.73 E-value=0.032 Score=48.63 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=58.0
Q ss_pred CeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC-Ccc--CCC-CceecCCCcccccc
Q psy14499 59 SKISIQG-FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-SIK--DFN-EGEKINDSKEFWSI 133 (262)
Q Consensus 59 ~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g-~~~--~~~-~~~~~~~~~~il~~ 133 (262)
++|.|+| .|++|+.+++.|.+.|.+|+ +.+ -+.+++.+..+... .+. ++. .....+ ..+.. .
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~----------r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~-~~ea~-~ 67 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGS----------RDLEKAEEAAAKALEELGHGGSDIKVTGAD-NAEAA-K 67 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEE----------cCHHHHHHHHHHHHhhccccCCCceEEEeC-hHHHH-h
Confidence 4799997 89999999999999999887 555 24444433332210 010 110 011112 22333 4
Q ss_pred CceEEeeCCccCcccc---cchhccCceEEEecCCCCC
Q psy14499 134 PCDILIPAAIEDQITI---NNANNVTAKIILEGANGPT 168 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~~~kiIve~AN~p~ 168 (262)
++|++|-|.....+.. +....++.++|+...|+..
T Consensus 68 ~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 68 RADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence 8999999887654422 1222344589999999854
No 206
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.72 E-value=0.017 Score=46.68 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=26.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|+|+|.|.+|..+++.|.+.|..-+.+.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcC
Confidence 5899999999999999999999865557774
No 207
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.72 E-value=0.099 Score=48.94 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=33.1
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+.+.. .|.+|+|.|+|.+|...+++....|++|+++.-
T Consensus 158 alk~~~~~-pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~ 198 (339)
T COG1064 158 ALKKANVK-PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITR 198 (339)
T ss_pred ehhhcCCC-CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeC
Confidence 34443333 589999999999999999999999999996653
No 208
>KOG0409|consensus
Probab=95.67 E-value=0.024 Score=52.08 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=51.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++...+|-.+|.|++|.+.+..|.+.|++|+ |.| .+.++..++.+...++.+- |.++- .+
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVt-V~d----------r~~~k~~~f~~~Ga~v~~s--------PaeVa-e~ 91 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVT-VYD----------RTKDKCKEFQEAGARVANS--------PAEVA-ED 91 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEE-EEe----------CcHHHHHHHHHhchhhhCC--------HHHHH-hh
Confidence 4568899999999999999999999999998 877 7888888888776555443 33443 35
Q ss_pred ceEEeeC
Q psy14499 135 CDILIPA 141 (262)
Q Consensus 135 ~DIlipa 141 (262)
||++|-|
T Consensus 92 sDvvitm 98 (327)
T KOG0409|consen 92 SDVVITM 98 (327)
T ss_pred cCEEEEE
Confidence 6666643
No 209
>PRK04148 hypothetical protein; Provisional
Probab=95.67 E-value=0.078 Score=43.20 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++|+++|+| -|..+|+.|.+.|..|+ ..| +|+.++...++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~Vi-aID----------i~~~aV~~a~~~ 58 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVI-VID----------INEKAVEKAKKL 58 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHh
Confidence 67899999999 89999999999999999 668 788876666553
No 210
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.65 E-value=0.044 Score=49.64 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=27.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|.+.|..|+ +.|
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEE-EEe
Confidence 589999999999999999999999977 666
No 211
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=95.65 E-value=0.16 Score=48.52 Aligned_cols=98 Identities=19% Similarity=0.312 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHH---HHHHhcCCccC---C-C------C
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQ---KYVTFTRSIKD---F-N------E 120 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~---~~~~~~g~~~~---~-~------~ 120 (262)
+..+|+|.|||.+|+.+.|.|.+. ...+++|-|. .|++.+. ++-..+|++.. . . +
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~---------~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~ 129 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT---------GGVKQASHLLKYDSTLGTFDADVKPVGDDAISVD 129 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC---------CCHHHHHHHHhhcccCCCcCCcEEEecCCEEEEC
Confidence 447999999999999999999875 4689988773 2444332 22223333211 0 0 1
Q ss_pred ceec---C--CCcc--ccccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 121 GEKI---N--DSKE--FWSIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 121 ~~~~---~--~~~~--il~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.+.+ . ++++ +-+.++|++++|+.. ..+.+.+... .|| +++.++
T Consensus 130 gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~-f~s~~~a~~hl~aGAkkV~iSap 183 (395)
T PLN03096 130 GKVIKVVSDRNPLNLPWGELGIDLVIEGTGV-FVDREGAGKHIQAGAKKVLITAP 183 (395)
T ss_pred CEEEEEEEcCCcccccccccCCCEEEECcch-hhhHHHHHHHHHCCCEEEEeCCC
Confidence 1111 1 1333 224799999999964 4566655544 566 444443
No 212
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=95.61 E-value=0.24 Score=44.89 Aligned_cols=176 Identities=13% Similarity=0.165 Sum_probs=97.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC----CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g----~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
+++.++|+||+|++++.-|.+.| ..|+ |++ -+.++..++.++.+.. ..+ +..-...+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~----------~~~e~~~~l~~~~g~~-------~~~-~~~~~~~~ 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTN----------RSEEKRAALAAEYGVV-------TTT-DNQEAVEE 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeC----------CCHHHHHHHHHHcCCc-------ccC-cHHHHHhh
Confidence 57999999999999999999988 3555 887 3566665555554321 122 22233358
Q ss_pred ceEEeeCCccCcccccchhcc----CceEEEecCCCCCCHHHHHHHH-HCCCeEeccccccchhhHHHHHH---------
Q psy14499 135 CDILIPAAIEDQITINNANNV----TAKIILEGANGPTTTEADDILR-DKGIILAPDVITNAGGVIVSYFE--------- 200 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~----~~kiIve~AN~p~t~ea~~~l~-~rgi~~iPD~~aN~GGvi~s~~E--------- 200 (262)
+|+++.|--+..+ .+...++ +.|+|+.-+=+-......+.|- .+=+.++|..-+-.|--.+.++.
T Consensus 63 advv~LavKPq~~-~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~ 141 (266)
T COG0345 63 ADVVFLAVKPQDL-EEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDK 141 (266)
T ss_pred CCEEEEEeChHhH-HHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHH
Confidence 9999988755332 2222333 4667777666655555555553 33356677765544432221111
Q ss_pred -HHh----hhcCCCCCHHHHHHHH-------HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy14499 201 -WVQ----NLSNLLWTEQEINLRL-------NNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQ 255 (262)
Q Consensus 201 -~~~----~~~~~~~~~~~v~~~l-------~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~~ 255 (262)
+++ ......|=+|.-.+.+ =.++.-.++.+.+.+-+.|+|. +-|+.++.+-+.-
T Consensus 142 ~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~-~~A~~l~~~t~~G 207 (266)
T COG0345 142 AFVEALLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPR-EEARELAAQTVAG 207 (266)
T ss_pred HHHHHHHHhcCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHH
Confidence 222 1223344334333322 1223344555556677778665 4555666655543
No 213
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.61 E-value=0.042 Score=47.58 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=82.9
Q ss_pred CCChhHHHHHHHHHHHH-----HHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHH
Q psy14499 33 RQKATGRGVFIIGSKIA-----SKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQ 106 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~-----~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~ 106 (262)
-.+.|..||..-++..= +..|.+++|++++|+|=++ ||+-++.+|.+.|++|+ ++|++|..+-..+-..
T Consensus 32 ~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~~~~~~~~---- 106 (197)
T cd01079 32 ILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQVFTRGESI---- 106 (197)
T ss_pred ccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCccccccccccc----
Confidence 35799999876655320 0114589999999999765 89999999999999988 9998776553221110
Q ss_pred HHHHhcCCccCCCCceecCCCc-ccc--ccCceEEeeCCc-cCc-ccccchhccCceEEEe-cCCCCCCHHHHHHHHHCC
Q psy14499 107 KYVTFTRSIKDFNEGEKINDSK-EFW--SIPCDILIPAAI-EDQ-ITINNANNVTAKIILE-GANGPTTTEADDILRDKG 180 (262)
Q Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~-~il--~~~~DIlipaa~-~~~-it~e~a~~~~~kiIve-~AN~p~t~ea~~~l~~rg 180 (262)
++. .+...+.+ .+. -..+||+|-|.. .+. ++.+..+. .-+|++ |-|.-+. +..+++-
T Consensus 107 ~hs-----------~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~--GavVIDVGi~~dvd----~~v~~~a 169 (197)
T cd01079 107 RHE-----------KHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKD--GAICINFASIKNFE----PSVKEKA 169 (197)
T ss_pred ccc-----------cccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCC--CcEEEEcCCCcCcc----HhHHhhc
Confidence 110 00000000 121 258999998876 476 78777663 234444 3332222 1223332
Q ss_pred CeEeccccccchhhHHHHH
Q psy14499 181 IILAPDVITNAGGVIVSYF 199 (262)
Q Consensus 181 i~~iPD~~aN~GGvi~s~~ 199 (262)
-.+.|= .|.++++.+
T Consensus 170 s~iTPv----VGpvTva~L 184 (197)
T cd01079 170 SIYVPS----IGKVTIAML 184 (197)
T ss_pred CEeCCC----cCHHHHHHH
Confidence 246663 677776553
No 214
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.59 E-value=0.059 Score=48.84 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=27.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|...|..|+ +.|
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEE-EEe
Confidence 689999999999999999999999987 767
No 215
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.59 E-value=0.03 Score=48.43 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|+..+|+|+|.|.+|..+|+.|.+.|..-+.+.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4788999999999999999999999998544488854
No 216
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=95.59 E-value=0.17 Score=47.35 Aligned_cols=96 Identities=20% Similarity=0.346 Sum_probs=58.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---CC------Ccee
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---FN------EGEK 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~~------~~~~ 123 (262)
.||+|.|||.+|+.+.|.+.+. ...||+|-|. .|++.+.-+.+ .+|.+.. +. +.+.
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 72 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT---------SDPRTNAHLLKYDSMLGKLNADISADENSITVNGKT 72 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC---------CCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEE
Confidence 4899999999999999997653 6899999773 35554433322 3443321 00 1111
Q ss_pred ---cC--CCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 124 ---IN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 124 ---~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
.. +++++ | +.++|++++|+.. ..+.+.+... .||.|.-.+
T Consensus 73 I~v~~~~dp~~~~W~~~gvDiV~e~tG~-f~s~~~a~~hl~aGak~V~iSa 122 (337)
T PRK07403 73 IKCVSDRNPLNLPWKEWGIDLIIESTGV-FVTKEGASKHIQAGAKKVLITA 122 (337)
T ss_pred EEEEEcCCcccCChhhcCCCEEEeccch-hhhHHHHHHHhhCCcEEEEeCC
Confidence 11 13332 3 4699999999964 3555555544 577555444
No 217
>PRK14851 hypothetical protein; Provisional
Probab=95.57 E-value=0.016 Score=59.07 Aligned_cols=120 Identities=20% Similarity=0.247 Sum_probs=65.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
.|++.+|+|+|+|.||..+++.|...|..-+.++|.+- +++.-|+-+-+.. ...+ +.++.+.. .+.+.+.+
T Consensus 40 kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~--ve~sNLNRQ~~~~----~~dv-G~~Kv~v~--~~~l~~in 110 (679)
T PRK14851 40 RLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ--FEPVNVNRQFGAR----VPSF-GRPKLAVM--KEQALSIN 110 (679)
T ss_pred HHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE--ecccccccCcCcC----hhhC-CCHHHHHH--HHHHHHhC
Confidence 47899999999999999999999999986666888321 1111121111000 0001 11111111 12233444
Q ss_pred ceEEeeCCccCcccccchhcc--CceEEEecCCCCCCH---HHHHHHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQITINNANNV--TAKIILEGANGPTTT---EADDILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~---ea~~~l~~rgi~~i 184 (262)
.++=|.+- ..-++.+|+..+ ++.+|+++..++... ...+...+++|.++
T Consensus 111 P~~~I~~~-~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i 164 (679)
T PRK14851 111 PFLEITPF-PAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVI 164 (679)
T ss_pred CCCeEEEE-ecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 45544432 334566666654 577777777765321 12233456777765
No 218
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.56 E-value=0.049 Score=49.77 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=59.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh----cCCccC-------CCCceecCCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF----TRSIKD-------FNEGEKINDS 127 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~----~g~~~~-------~~~~~~~~~~ 127 (262)
++|+|+|.|.+|..+|..|.+.|..|+ +.| .+.+.+.+..+. .+.+.. ....+..++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~-~~d----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 73 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVV-LID----------VMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGL 73 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEE----------CCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCH
Confidence 579999999999999999999999887 666 345444443321 111110 0001111112
Q ss_pred ccccccCceEEeeCCccCcc-cc----cchhccCce-EEEecCCCCCCHHHHHHH
Q psy14499 128 KEFWSIPCDILIPAAIEDQI-TI----NNANNVTAK-IILEGANGPTTTEADDIL 176 (262)
Q Consensus 128 ~~il~~~~DIlipaa~~~~i-t~----e~a~~~~~k-iIve~AN~p~t~ea~~~l 176 (262)
.+.+ .+||++|.|.+++.. .. +..+.++.+ +|+...++....+..+.+
T Consensus 74 ~~~~-~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~ 127 (311)
T PRK06130 74 AAAV-SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAV 127 (311)
T ss_pred HHHh-ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhc
Confidence 2233 489999999887642 22 222222333 555666665444444444
No 219
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.54 E-value=0.11 Score=47.85 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=43.4
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHH----CCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFK----AGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~----~g~~vv~V~D~ 90 (262)
-.++|..|+ .+.+++.+.+++|++|+|+|=+ .||+-++.+|.+ .+++|+ ++.+
T Consensus 138 ~~PcTp~ai----l~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs 195 (295)
T PRK14174 138 FVSCTPYGI----LELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHS 195 (295)
T ss_pred cCCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeC
Confidence 357899887 5667778999999999999975 489999999987 688877 6663
No 220
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=95.51 E-value=0.24 Score=46.44 Aligned_cols=96 Identities=26% Similarity=0.397 Sum_probs=59.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---CC------Cce---
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---FN------EGE--- 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~~------~~~--- 122 (262)
.||+|.|||.+|+.+.|.+.+ ....+|+|-|. .|++.+.-+.+ .+|.+.. +. +.+
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~---------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~ 73 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS---------YPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIR 73 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEE
Confidence 589999999999999999765 46899999773 35554433322 3343321 00 111
Q ss_pred ec--CCCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 123 KI--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 123 ~~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
.. .+++++ | +.++|++++|+.. ..+.+.+... .||.|.-.|
T Consensus 74 v~~~~dp~~~~W~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSa 121 (343)
T PRK07729 74 LLNNRDPKELPWTDLGIDIVIEATGK-FNSKEKAILHVEAGAKKVILTA 121 (343)
T ss_pred EEEcCChhhCcccccCCCEEEEccch-hhhHhHHHHHHHcCCeEEEeCC
Confidence 11 024443 3 4699999999964 3566655544 577555443
No 221
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.46 E-value=0.17 Score=47.35 Aligned_cols=98 Identities=17% Similarity=0.334 Sum_probs=58.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC----C-C------Cce
Q psy14499 58 NSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD----F-N------EGE 122 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~----~-~------~~~ 122 (262)
..||+|.|||.+|+..++.+.+ .+.++++|+|.. .|++.+.-+.+ .+|.+.+ + . +.+
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~--------~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~ 76 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPF--------ITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK 76 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCC--------CCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCE
Confidence 3699999999999999999876 479999998842 24544333222 2343321 0 0 011
Q ss_pred e---c--CCCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 123 K---I--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 123 ~---~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
. . .+++++ | +.++|++++|+.. ..+.+.+... .||.|+=.+
T Consensus 77 ~i~v~~~~~p~~~~w~~~gvDiVie~tG~-~~s~~~a~~hl~aGak~ViiSa 127 (338)
T PLN02358 77 PVTVFGIRNPEDIPWGEAGADFVVESTGV-FTDKDKAAAHLKGGAKKVVISA 127 (338)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEcccc-hhhHHHHHHHHHCCCEEEEeCC
Confidence 1 1 112232 3 3689999999964 4666665544 566444443
No 222
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.46 E-value=0.082 Score=48.31 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
.-.+|+|+|+|.+|..+++.|.+.|. +|+ +.| .+.+.+....+ .+... ...++.++.+ .+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~-~~d----------r~~~~~~~a~~-~g~~~-----~~~~~~~~~~-~~ 66 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIV-GAD----------RSAETRARARE-LGLGD-----RVTTSAAEAV-KG 66 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEE-EEE----------CCHHHHHHHHh-CCCCc-----eecCCHHHHh-cC
Confidence 34689999999999999999999885 555 666 34555444332 22110 1111123334 48
Q ss_pred ceEEeeCCccCc
Q psy14499 135 CDILIPAAIEDQ 146 (262)
Q Consensus 135 ~DIlipaa~~~~ 146 (262)
||++|.|.+...
T Consensus 67 aDvViiavp~~~ 78 (307)
T PRK07502 67 ADLVILCVPVGA 78 (307)
T ss_pred CCEEEECCCHHH
Confidence 999999998654
No 223
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.46 E-value=0.055 Score=49.38 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=45.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|| .+++++.+.+++|++++|+|-+ .||+-++.+|.+.+++|+ +|.+
T Consensus 136 ~~PcTp~av----i~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs 189 (281)
T PRK14183 136 FVPCTPLGV----MELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHI 189 (281)
T ss_pred CCCCcHHHH----HHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCC
Confidence 457888877 5567778999999999999987 699999999999999987 8775
No 224
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.46 E-value=0.058 Score=49.25 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..++|..|+. +++++.+.+++|++++|+|=++ ||+-++.+|.+.+++|+ +|.+
T Consensus 135 ~~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs 188 (282)
T PRK14169 135 VVASTPYGIM----ALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHS 188 (282)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECC
Confidence 4678998875 4566779999999999999754 89999999999999987 7764
No 225
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.42 E-value=0.051 Score=49.50 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=27.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+|+|+|.|.+|..+|..|...|+.|+ +.|
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d 35 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVL-VFE 35 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEE-EEE
Confidence 389999999999999999999999988 777
No 226
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.42 E-value=0.088 Score=46.89 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=54.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG---AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g---~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
++|.|+|+|++|..+++.|.+.| ..+. ++| -+.+.+.++.+..+ ....++..+++ .++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~-v~~----------r~~~~~~~~~~~~g-------~~~~~~~~~~~-~~a 63 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDII-VSD----------PSPEKRAALAEEYG-------VRAATDNQEAA-QEA 63 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEE-EEc----------CCHHHHHHHHHhcC-------CeecCChHHHH-hcC
Confidence 57999999999999999999888 4443 656 24555544444322 11122133444 489
Q ss_pred eEEeeCCccCcccccchhccC---ceEEEecCCCC
Q psy14499 136 DILIPAAIEDQITINNANNVT---AKIILEGANGP 167 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~~---~kiIve~AN~p 167 (262)
|+++.|.....+. +....++ -++|+.-.|+-
T Consensus 64 dvVil~v~~~~~~-~v~~~l~~~~~~~vvs~~~gi 97 (267)
T PRK11880 64 DVVVLAVKPQVME-EVLSELKGQLDKLVVSIAAGV 97 (267)
T ss_pred CEEEEEcCHHHHH-HHHHHHHhhcCCEEEEecCCC
Confidence 9999998765432 2222221 35777777765
No 227
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.42 E-value=0.032 Score=52.77 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.+++.+|+|+|.|.+|..+++.|.+.|..-+.+.|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4789999999999999999999999998666688854
No 228
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.41 E-value=0.095 Score=50.18 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+++++++.|.|.|..|.++|+.|.+.|++|+ ++|.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~ 36 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDG 36 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcC
Confidence 4678999999999999999999999999987 7774
No 229
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.39 E-value=0.4 Score=41.96 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=53.7
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++++++|+|+|-|.||..=+++|.+.|++|+-+++. + .+++..+.++.+ +.-. . ..++ .+.+ .
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~---------~-~~el~~~~~~~~-i~~~-~-~~~~-~~~~--~ 71 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE---------F-EPELKALIEEGK-IKWI-E-REFD-AEDL--D 71 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC---------c-cHHHHHHHHhcC-cchh-h-cccC-hhhh--c
Confidence 3689999999999999999999999999999977763 3 456666655543 1111 1 1121 2222 2
Q ss_pred CceEEeeCCccCccccc
Q psy14499 134 PCDILIPAAIEDQITIN 150 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e 150 (262)
++++.|-|+....+|..
T Consensus 72 ~~~lviaAt~d~~ln~~ 88 (210)
T COG1648 72 DAFLVIAATDDEELNER 88 (210)
T ss_pred CceEEEEeCCCHHHHHH
Confidence 37777777765555543
No 230
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.39 E-value=0.068 Score=49.98 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=64.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccCCCCceecCCCcccc--c--cC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDFNEGEKINDSKEFW--S--IP 134 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~~~~~~~~~~~~~il--~--~~ 134 (262)
+|+|+|.|++|.-++..+...|+..|-++| ++.++|...++..+. ....+..+.. ...++ . ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d----------~~~~Rl~~A~~~~g~~~~~~~~~~~~--~~~~~~~t~g~g 238 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVD----------RSPERLELAKEAGGADVVVNPSEDDA--GAEILELTGGRG 238 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeC----------CCHHHHHHHHHhCCCeEeecCccccH--HHHHHHHhCCCC
Confidence 999999999999999999999987776778 788887666553331 1111111000 11121 1 36
Q ss_pred ceEEeeCCccCc--ccccchhccCceEEEecCCCCCC-HHHHHHHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQ--ITINNANNVTAKIILEGANGPTT-TEADDILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~--it~e~a~~~~~kiIve~AN~p~t-~ea~~~l~~rgi~~i 184 (262)
+|++++|+.... .+.-.+.+...+++.=|--.+-. +.-...+-.|++.+.
T Consensus 239 ~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~ 291 (350)
T COG1063 239 ADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLR 291 (350)
T ss_pred CCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEE
Confidence 999999997221 11122223356665555554432 222233445555554
No 231
>PLN02256 arogenate dehydrogenase
Probab=95.39 E-value=0.048 Score=50.24 Aligned_cols=33 Identities=39% Similarity=0.605 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V 87 (262)
+.+.++|+|+|+|.+|+.+++.|.+.|.+|+++
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~ 65 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLAT 65 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEE
Confidence 457889999999999999999999999888844
No 232
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.37 E-value=0.15 Score=48.79 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++++++|+|+|.|.+|..+|+.|.+.|+.|+ ++|.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~ 36 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDE 36 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 4688999999999999999999999999988 6664
No 233
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.34 E-value=0.06 Score=50.08 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=28.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|+..|..+...|+.|+ +.|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~-l~D 37 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVV-AWD 37 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEe
Confidence 589999999999999999999999988 777
No 234
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.34 E-value=0.049 Score=49.13 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=27.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..++..|...|..|+ +.|
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEe
Confidence 479999999999999999999999888 667
No 235
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.33 E-value=0.064 Score=49.03 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=62.2
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..|+.. ++++.+.++.|++++|+|-+ .||+-++.+|.+.+++|+ +|+++. -|+.
T Consensus 138 ~~PcTp~avi~----ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-~chs~T-------~~l~-------- 197 (284)
T PRK14177 138 YLPCTPYGMVL----LLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-LCHSKT-------QNLP-------- 197 (284)
T ss_pred CCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC-------CCHH--------
Confidence 45789988865 55677999999999999975 589999999999999988 887521 1111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhc
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 154 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~ 154 (262)
+.. ..+||+|-|.. .+.++.+.++.
T Consensus 198 -----------------~~~-~~ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 198 -----------------SIV-RQADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred -----------------HHH-hhCCEEEEeCCCcCccCHHHcCC
Confidence 111 47888887765 47777776664
No 236
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.33 E-value=0.29 Score=45.40 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=73.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
...++++|+|.|..|+..+..|.. .+.+-|.|.+ -+.++..++.++...-.+. .....++.++.+ .+
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~----------R~~~~a~~l~~~~~~~~g~-~v~~~~d~~~al-~~ 197 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWA----------RDAAKAEAYAADLRAELGI-PVTVARDVHEAV-AG 197 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEc----------CCHHHHHHHHHHHhhccCc-eEEEeCCHHHHH-cc
Confidence 356799999999999999988875 5677777877 4667666665532210011 111223233444 47
Q ss_pred ceEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccc
Q psy14499 135 CDILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVIT 189 (262)
Q Consensus 135 ~DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~a 189 (262)
+||++-|++. .+++.+..+. .+.+..=|++.|...|.+..+.++.-.|+-|.+.
T Consensus 198 aDiVi~aT~s~~p~i~~~~l~~-g~~v~~vg~d~~~~rEld~~~l~~a~~v~vD~~~ 253 (330)
T PRK08291 198 ADIIVTTTPSEEPILKAEWLHP-GLHVTAMGSDAEHKNEIAPAVFAAADLYVCDRLS 253 (330)
T ss_pred CCEEEEeeCCCCcEecHHHcCC-CceEEeeCCCCCCcccCCHHHHhhCCEEEeCCHH
Confidence 9999999864 3344433221 2446666777777666665555554445556544
No 237
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.32 E-value=0.027 Score=52.93 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCc---------eeeCCCCCCHHHHHHHHHhcCCccCCCCcee--
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT---------TIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK-- 123 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G---------~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~-- 123 (262)
.|+..+|+|+|.|.+|..+++.|...|..-+.+.|.+- .+|+++-+-..+....+++-..+..+-..+.
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 36889999999999999999999999987777888532 3444432222333333332222222111111
Q ss_pred --cCCCc---cccccCceEEeeCCccCccc----ccchhccCceEEEecCCCC
Q psy14499 124 --INDSK---EFWSIPCDILIPAAIEDQIT----INNANNVTAKIILEGANGP 167 (262)
Q Consensus 124 --~~~~~---~il~~~~DIlipaa~~~~it----~e~a~~~~~kiIve~AN~p 167 (262)
++ .+ +++ .++|++|.|+-. .-+ -+.+.+.+..+|..+..+.
T Consensus 105 ~~i~-~~~~~~~~-~~~DvVvd~~d~-~~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 105 RRLT-WSNALDEL-RDADVILDGSDN-FDTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred eecC-HHHHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 21 11 233 489999999742 111 1234444566666655443
No 238
>KOG2380|consensus
Probab=95.30 E-value=0.04 Score=51.59 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
...+|+|+||||.|+-.|+.|.+.|..++ ++|+
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li-~hsR 83 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLI-CHSR 83 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeE-ecCc
Confidence 57899999999999999999999999988 6664
No 239
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.29 E-value=0.1 Score=47.39 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+.+++|+|.|.||..++++++.+|+++|.++|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~ 176 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWE 176 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Confidence 3577899999999999999999999999776777
No 240
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.29 E-value=0.12 Score=47.81 Aligned_cols=126 Identities=15% Similarity=0.120 Sum_probs=69.9
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 126 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 126 (262)
+.+++..+ .-.++.|+|.|..++.-++.|.. +..+-|-|.+ .+.+...++.++...+ ++ .....++
T Consensus 119 a~~~La~~-~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~----------r~~~~~~~~~~~~~~~-~~-~v~~~~~ 185 (313)
T PF02423_consen 119 AARYLARP-DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYS----------RSPERAEAFAARLRDL-GV-PVVAVDS 185 (313)
T ss_dssp HHHHHS-T-T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-----------SSHHHHHHHHHHHHCC-CT-CEEEESS
T ss_pred HHHHhCcC-CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEc----------cChhHHHHHHHhhccc-cc-cceeccc
Confidence 44555432 45699999999999999998876 5676666766 5676666665543321 22 2223332
Q ss_pred CccccccCceEEeeCCccCc----ccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccc
Q psy14499 127 SKEFWSIPCDILIPAAIEDQ----ITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVIT 189 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~----it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~a 189 (262)
.++.. .++||++-|+.... ++.+..+. .+-++.=|++.|-..|.+..+-++--.++ |...
T Consensus 186 ~~~av-~~aDii~taT~s~~~~P~~~~~~l~~-g~hi~~iGs~~~~~~El~~~~~~~a~~~v-d~~~ 249 (313)
T PF02423_consen 186 AEEAV-RGADIIVTATPSTTPAPVFDAEWLKP-GTHINAIGSYTPGMRELDDELLKRADIVV-DSEA 249 (313)
T ss_dssp HHHHH-TTSSEEEE----SSEEESB-GGGS-T-T-EEEE-S-SSTTBESB-HHHHHCSEEEE-SCHH
T ss_pred hhhhc-ccCCEEEEccCCCCCCccccHHHcCC-CcEEEEecCCCCchhhcCHHHhccCCEEE-ccHH
Confidence 44455 58999999987654 56554433 56688888888876676666666655565 7764
No 241
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.27 E-value=0.067 Score=52.71 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=50.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHH----------HhcCCccCC------CCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV----------TFTRSIKDF------NEGE 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~----------~~~g~~~~~------~~~~ 122 (262)
++|.|+|.|.+|..+|..|...|+.|+ +.| .+.+.+.+.. .+.|.+..- ...+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~-l~D----------~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~ 76 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVL-LYD----------ARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLR 76 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEe----------CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 579999999999999999999999988 878 5666555431 223332210 0112
Q ss_pred ecCCCccccccCceEEeeCCccCccc
Q psy14499 123 KINDSKEFWSIPCDILIPAAIEDQIT 148 (262)
Q Consensus 123 ~~~~~~~il~~~~DIlipaa~~~~it 148 (262)
..++.++ + .+||++|+|-+++.--
T Consensus 77 ~~~~~~~-~-~~aDlViEav~E~~~v 100 (507)
T PRK08268 77 PVEALAD-L-ADCDLVVEAIVERLDV 100 (507)
T ss_pred EeCCHHH-h-CCCCEEEEcCcccHHH
Confidence 2222322 3 3899999997765443
No 242
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.26 E-value=0.11 Score=47.65 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=27.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|.++|..|.+.|.+|+ +.|
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~-v~d 32 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVR-LWD 32 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeE-EEe
Confidence 379999999999999999999999987 666
No 243
>KOG0455|consensus
Probab=95.22 E-value=0.12 Score=46.53 Aligned_cols=174 Identities=17% Similarity=0.133 Sum_probs=93.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC---------CCEEEEEeCCCceeeC----CCCCCHHHHHHHHHhcCCccCCCCcee
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA---------GAKIVAIQDDKTTIYN----PNGFNIPKLQKYVTFTRSIKDFNEGEK 123 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~---------g~~vv~V~D~~G~i~~----~~GlD~~~l~~~~~~~g~~~~~~~~~~ 123 (262)
+...|+|+|+|+||+++.+.+..+ -+++|+|||+.+.+.. |.-++-+..-++...+++-
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~a-------- 73 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGSA-------- 73 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCCc--------
Confidence 457899999999999998777653 2699999999887754 3333333333344443321
Q ss_pred cCCCcc----cc-ccCceEEeeCCccCcccccchhccCceEEEecCC-CCCC--HHHHHHHHHC---CCeEeccccccch
Q psy14499 124 INDSKE----FW-SIPCDILIPAAIEDQITINNANNVTAKIILEGAN-GPTT--TEADDILRDK---GIILAPDVITNAG 192 (262)
Q Consensus 124 ~~~~~~----il-~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN-~p~t--~ea~~~l~~r---gi~~iPD~~aN~G 192 (262)
++ .+. ++ +-..=||++|+.+-.+-+-.-+-+.-++-+.-+| -|+| .+-.+-|..+ +-.+.+.-...+|
T Consensus 74 ls-LdaLia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~s~~fi~HEatVGAG 152 (364)
T KOG0455|consen 74 LS-LDALIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSKSPRFIRHEATVGAG 152 (364)
T ss_pred cc-HHHHHHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCCCCceEEeeccccCC
Confidence 11 222 22 2245678888765443332222223333334444 4664 4555666555 5566666556555
Q ss_pred -hhHHHHHHHHhhhcC-------CCCCHHHHHHHHHHHHH--HHHHHHHHHHhhcCC
Q psy14499 193 -GVIVSYFEWVQNLSN-------LLWTEQEINLRLNNIIC--NAFDAIWELANTKKV 239 (262)
Q Consensus 193 -Gvi~s~~E~~~~~~~-------~~~~~~~v~~~l~~~~~--~~~~~v~~~a~~~~~ 239 (262)
.+|++--|.++--.. +.-+..-++..+++--. -.+.++.+.|++.|.
T Consensus 153 LPiIs~L~eiI~tGDev~kIeGifSGTLsYifne~s~gk~~~~sfsdvVk~AKklGY 209 (364)
T KOG0455|consen 153 LPIISSLNEIISTGDEVHKIEGIFSGTLSYIFNELSDGKPGTLSFSDVVKAAKKLGY 209 (364)
T ss_pred chhHHHHHHHHhcCCceeEEEEEeeccHHHHHHHhhcCCCCcccHHHHHHHHHHcCC
Confidence 345555666542110 00112223333332211 245678888888775
No 244
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.22 E-value=0.039 Score=47.60 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.++..+|.|+|.|.+|..+++.|...|..-+.+.|.+
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3688999999999999999999999998877788753
No 245
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.21 E-value=0.039 Score=45.93 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=50.7
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++++++|+|+|.|.||...++.|.+.|+.|+ |.+ |+ +. +++.++ +.+. + ..+.+. ..++ .
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~-VIs-------p~-~~-~~l~~l----~~i~-~-~~~~~~-~~dl--~ 69 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVT-VVS-------PE-IC-KEMKEL----PYIT-W-KQKTFS-NDDI--K 69 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEc-------Cc-cC-HHHHhc----cCcE-E-EecccC-hhcC--C
Confidence 47899999999999999999999999999998 443 22 21 122221 1110 0 011122 2223 4
Q ss_pred CceEEeeCCccCcccccch
Q psy14499 134 PCDILIPAAIEDQITINNA 152 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a 152 (262)
++|+++-|+..+.+|...+
T Consensus 70 ~a~lViaaT~d~e~N~~i~ 88 (157)
T PRK06719 70 DAHLIYAATNQHAVNMMVK 88 (157)
T ss_pred CceEEEECCCCHHHHHHHH
Confidence 7899999987766665433
No 246
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.20 E-value=0.19 Score=47.03 Aligned_cols=97 Identities=21% Similarity=0.339 Sum_probs=60.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---CC------Ccee--
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---FN------EGEK-- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~~------~~~~-- 123 (262)
.||+|.|||.+|+.+.|.+.+ ....+|+|-|.. .|++.+.-+.+ .+|.+.. +. +.+.
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~--------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~ 74 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPF--------MTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVH 74 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCC--------CChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEE
Confidence 589999999999999999765 469999987731 35544333322 2343321 00 1111
Q ss_pred -c--CCCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 124 -I--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 124 -~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
. .++.++ | +.++|++++|+.. ..+.+.+... .||.|.-.+
T Consensus 75 ~~~~~dp~~lpW~~~gvDiVle~tG~-~~s~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 75 VFFEKDPAAIPWGKNGVDVVCESTGV-FLTKEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred EEeCCChhhCCccccCCCEEEEecch-hcCHHHHHHHhhCCCEEEEeCC
Confidence 1 123443 3 5799999999964 4666666654 577666555
No 247
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.20 E-value=0.028 Score=43.25 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=30.0
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++|+|+|.|+||..-++.|.+.|++|+-++.
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~ 38 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISP 38 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 368999999999999999999999999999985554
No 248
>PRK07411 hypothetical protein; Validated
Probab=95.20 E-value=0.037 Score=52.70 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+..+|+|+|+|.+|..+++.|...|..-+.+.|.
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~ 70 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF 70 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 468899999999999999999999999877778884
No 249
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.16 E-value=0.061 Score=51.43 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=54.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-CCCceecCCCccccc---cC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-FNEGEKINDSKEFWS---IP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-~~~~~~~~~~~~il~---~~ 134 (262)
++|+|.|+|.+|+.+++.|.+.|..++ +.| -|++.+.+..+..+ +.- +.+.. + ...+.+ .+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~-vid----------~~~~~~~~~~~~~~-~~~~~gd~~--~-~~~l~~~~~~~ 65 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVT-VID----------TDEERLRRLQDRLD-VRTVVGNGS--S-PDVLREAGAED 65 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEE-EEE----------CCHHHHHHHHhhcC-EEEEEeCCC--C-HHHHHHcCCCc
Confidence 479999999999999999999999998 556 36666655544221 100 00111 1 111111 37
Q ss_pred ceEEeeCCccCcccc---cchhcc--CceEEEecC
Q psy14499 135 CDILIPAAIEDQITI---NNANNV--TAKIILEGA 164 (262)
Q Consensus 135 ~DIlipaa~~~~it~---e~a~~~--~~kiIve~A 164 (262)
+|.++-|+..+..|. ..++.+ ..++|+...
T Consensus 66 a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~ 100 (453)
T PRK09496 66 ADLLIAVTDSDETNMVACQIAKSLFGAPTTIARVR 100 (453)
T ss_pred CCEEEEecCChHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 899998887655543 344444 344555543
No 250
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.16 E-value=0.071 Score=48.20 Aligned_cols=113 Identities=13% Similarity=0.195 Sum_probs=66.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC----CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g----~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
.+|.|+|+|++|+.+++.|.+.| .+++.+..+ +.+++....... +......+..++. .+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~----------~~~~~~~l~~~~------~~~~~~~~~~e~~-~~ 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS----------KNEHFNQLYDKY------PTVELADNEAEIF-TK 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC----------cHHHHHHHHHHc------CCeEEeCCHHHHH-hh
Confidence 37999999999999999999887 566633321 122333332221 1122122133343 48
Q ss_pred ceEEeeCCccCcccccchh----cc-CceEEEecCCCCCCHHHHHHHHH-CCCeEeccccc
Q psy14499 135 CDILIPAAIEDQITINNAN----NV-TAKIILEGANGPTTTEADDILRD-KGIILAPDVIT 189 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~----~~-~~kiIve~AN~p~t~ea~~~l~~-rgi~~iPD~~a 189 (262)
+|++|.|.....+. +.+. .+ +-++|+.-+|+-...+..+.+.. +=+.++|..-+
T Consensus 65 aDvVilavpp~~~~-~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~ 124 (277)
T PRK06928 65 CDHSFICVPPLAVL-PLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTS 124 (277)
T ss_pred CCEEEEecCHHHHH-HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHH
Confidence 99999998765433 2222 23 23478888888666666666643 33466675544
No 251
>PRK14852 hypothetical protein; Provisional
Probab=95.16 E-value=0.087 Score=55.48 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHH-HhcCCccCCCCceecCCCcccccc
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV-TFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~-~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.|+..+|+|+|+|.||..+++.|...|..-+.++|-+- ++..-|-+.. .....+ +-++++.. .+.+.+.
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~-------Ve~SNLNRQ~l~~~~dI-G~~Kaeva--a~~l~~I 398 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA-------YSPVNLNRQYGASIASF-GRGKLDVM--TERALSV 398 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE-------ecccccccccCCChhhC-CChHHHHH--HHHHHHH
Confidence 48999999999999999999999999987777888321 1111111100 000001 00111111 1223344
Q ss_pred CceEEeeCCccCcccccchhcc--CceEEEecCCCCCCHH---HHHHHHHCCCeEe
Q psy14499 134 PCDILIPAAIEDQITINNANNV--TAKIILEGANGPTTTE---ADDILRDKGIILA 184 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~e---a~~~l~~rgi~~i 184 (262)
+.++=|.+-.. -++.+|+..+ .+.+|+++..++.+.. ......++||.++
T Consensus 399 NP~v~I~~~~~-~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I 453 (989)
T PRK14852 399 NPFLDIRSFPE-GVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVI 453 (989)
T ss_pred CCCCeEEEEec-CCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEE
Confidence 55555544322 3466666665 5677787777754322 2223367777765
No 252
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.16 E-value=0.028 Score=52.94 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=64.5
Q ss_pred EEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhc--CCccCCCCceec--CCCcccc--c
Q psy14499 61 ISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFT--RSIKDFNEGEKI--NDSKEFW--S 132 (262)
Q Consensus 61 v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~--g~~~~~~~~~~~--~~~~~il--~ 132 (262)
|+|.|.|.||+.+++.|.+..- +++ |+| -+.+++.+..++. ..+.. ..+ .+.+++- -
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~-va~----------r~~~~~~~~~~~~~~~~~~~----~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVT-VAD----------RNPEKAERLAEKLLGDRVEA----VQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEE-EEE----------SSHHHHHHHHT--TTTTEEE----EE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEE-EEE----------CCHHHHHHHHhhccccceeE----EEEecCCHHHHHHHH
Confidence 6899999999999999998764 555 888 6888887776542 11111 111 1122222 2
Q ss_pred cCceEEeeCCccCcccccchhc---cCceEEEecCCCC-CCHHHHHHHHHCCCeEeccccccchhh
Q psy14499 133 IPCDILIPAAIEDQITINNANN---VTAKIILEGANGP-TTTEADDILRDKGIILAPDVITNAGGV 194 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~---~~~kiIve~AN~p-~t~ea~~~l~~rgi~~iPD~~aN~GGv 194 (262)
.++|++|.|++.. .+...++. .++. .++.+... ...+.++..+++|+.++++.=.+.|=.
T Consensus 66 ~~~dvVin~~gp~-~~~~v~~~~i~~g~~-yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 66 RGCDVVINCAGPF-FGEPVARACIEAGVH-YVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp TTSSEEEE-SSGG-GHHHHHHHHHHHT-E-EEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred hcCCEEEECCccc-hhHHHHHHHHHhCCC-eeccchhHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 5899999999765 33322222 2444 44422200 012234566789999998876665543
No 253
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.14 E-value=0.18 Score=46.75 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
.-++++|+|.|..++.-++.+.. ...+-|-|.| .++++..++.+..... ++ .....++.++.. .++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~----------r~~~~a~~~~~~~~~~-~~-~v~~~~~~~~av-~~A 193 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWG----------RSETALEEYRQYAQAL-GF-AVNTTLDAAEVA-HAA 193 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEEC----------CCHHHHHHHHHHHHhc-CC-cEEEECCHHHHh-cCC
Confidence 56799999999999999998876 3444444655 4566655544322111 11 223333234444 699
Q ss_pred eEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecccc
Q psy14499 136 DILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 136 DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~ 188 (262)
||++-|+.. -++..+..+ -.+-++.=|++.|-..|.+..+.++.-.++-|..
T Consensus 194 DIV~taT~s~~P~~~~~~l~-~G~hi~~iGs~~p~~~Eld~~~l~~a~~vvvD~~ 247 (315)
T PRK06823 194 NLIVTTTPSREPLLQAEDIQ-PGTHITAVGADSPGKQELDAELVARADKILVDSI 247 (315)
T ss_pred CEEEEecCCCCceeCHHHcC-CCcEEEecCCCCcccccCCHHHHhhCCEEEECCH
Confidence 999988764 444444432 2566888899999777776555555533444553
No 254
>PRK08655 prephenate dehydrogenase; Provisional
Probab=95.14 E-value=0.072 Score=51.50 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=53.3
Q ss_pred CeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 59 SKISIQG-FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 59 ~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
++|.|+| +|.+|+.+++.|.+.|..|+ +.| .|.+.+.+...+.+ ....++..+.+ .++|+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~-v~~----------r~~~~~~~~a~~~g-------v~~~~~~~e~~-~~aDv 61 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVI-VTG----------RDPKKGKEVAKELG-------VEYANDNIDAA-KDADI 61 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEE-EEE----------CChHHHHHHHHHcC-------CeeccCHHHHh-ccCCE
Confidence 4799997 89999999999999999877 555 34444444433332 11111122333 47899
Q ss_pred EeeCCccCcccccchhc----c-CceEEEecCC
Q psy14499 138 LIPAAIEDQITINNANN----V-TAKIILEGAN 165 (262)
Q Consensus 138 lipaa~~~~it~e~a~~----~-~~kiIve~AN 165 (262)
+|-|.+.+.+. +.+.+ + ...+|++-+.
T Consensus 62 VIlavp~~~~~-~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 62 VIISVPINVTE-DVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred EEEecCHHHHH-HHHHHHHhhCCCCCEEEEccc
Confidence 99888765442 22222 3 2346777665
No 255
>PRK07877 hypothetical protein; Provisional
Probab=95.14 E-value=0.014 Score=59.76 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~ 90 (262)
.|+..+|+|+|.| +|+.++.+|.+.|. +++ ++|.
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~-lvD~ 139 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELR-LADF 139 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEE-EEcC
Confidence 4789999999999 99999999999995 554 8874
No 256
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.13 E-value=0.085 Score=48.10 Aligned_cols=91 Identities=23% Similarity=0.296 Sum_probs=64.8
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..|+. +++++.+.+++|++++|+|-+ .||+-++.+|.+.+++|+ +|+++. -|+.
T Consensus 137 ~~PcTp~av~----~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-~chs~T-------~~l~-------- 196 (278)
T PRK14172 137 FLPCTPNSVI----TLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-ICHSKT-------KNLK-------- 196 (278)
T ss_pred CcCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCCC-------CCHH--------
Confidence 4578888774 456677899999999999974 589999999999999987 887521 1111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEec
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEG 163 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~ 163 (262)
++. ..+||+|-|.. .+.++++.++. ..+|++.
T Consensus 197 -----------------~~~-~~ADIvIsAvGkp~~i~~~~ik~--gavVIDv 229 (278)
T PRK14172 197 -----------------EVC-KKADILVVAIGRPKFIDEEYVKE--GAIVIDV 229 (278)
T ss_pred -----------------HHH-hhCCEEEEcCCCcCccCHHHcCC--CcEEEEe
Confidence 111 46888888776 57788777653 2344443
No 257
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.08 E-value=0.093 Score=47.64 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=27.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|...|..|+ +.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d 34 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLD 34 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEE-EEe
Confidence 579999999999999999999999887 667
No 258
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.08 E-value=0.057 Score=46.52 Aligned_cols=52 Identities=29% Similarity=0.339 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHH--HHCCCEEEEEeC
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLF--FKAGAKIVAIQD 89 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L--~~~g~~vv~V~D 89 (262)
-||-|-.-.....+.+|.+ +..+++|+|.||.|++++.+- .+.+.+++++.|
T Consensus 64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FD 117 (211)
T COG2344 64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFD 117 (211)
T ss_pred CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEec
Confidence 4566655556666667777 778999999999999999663 467999999999
No 259
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.07 E-value=0.14 Score=48.88 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=70.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
...+-|+|++.+|+++|-.+.++|++|. |.+ -+.++..++.++.+.-..+.+...+++.-.-++.|=-|
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~Va-vyN----------Rt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI 71 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVA-VYN----------RTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKI 71 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEE-EEe----------CCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceE
Confidence 3567899999999999999999999976 655 25666666666554322222222121011112233333
Q ss_pred EeeCCccCccc---ccchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEe
Q psy14499 138 LIPAAIEDQIT---INNANNV-TAKIILEGANGPT--TTEADDILRDKGIILA 184 (262)
Q Consensus 138 lipaa~~~~it---~e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~i 184 (262)
++-..-+..++ .+-.+-+ +..||++|.|.-. |-.-.+.|.++||.++
T Consensus 72 ~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~Fv 124 (473)
T COG0362 72 LLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFV 124 (473)
T ss_pred EEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEE
Confidence 33322222222 2223333 6779999999987 4455688999999988
No 260
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=95.06 E-value=0.059 Score=49.10 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=45.9
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|+ ..++++.+.++.|++++|+|-++ ||+-++.+|...+++|. ||.+
T Consensus 135 ~~PCTp~gi----~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-vcHs 188 (283)
T COG0190 135 FLPCTPAGI----MTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT-VCHS 188 (283)
T ss_pred CCCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-EEcC
Confidence 457888887 45677789999999999999887 89999999999999988 8875
No 261
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.05 E-value=0.052 Score=51.71 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+..+|+|+|.|.+|..+++.|...|..-+.+.|.
T Consensus 39 ~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~ 74 (392)
T PRK07878 39 RLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF 74 (392)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 368899999999999999999999999877778884
No 262
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.05 E-value=0.22 Score=48.64 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+.+++|+|+|+|..|.+++++|...|++|+ ++|
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D 42 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCD 42 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEc
Confidence 367899999999999999999999999988 688
No 263
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=95.04 E-value=0.025 Score=50.54 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|++.+|+|+|.|.||+++++.|.+-|..=+.+.|-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 68899999999999999999999999765557774
No 264
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=95.03 E-value=0.076 Score=52.29 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=28.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-++|+|+|.|.+|+.+|..|...|+.|+ +.|
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~-l~d 35 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVL-LYD 35 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEE-EEe
Confidence 3579999999999999999999999988 777
No 265
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.02 E-value=0.091 Score=48.12 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..||. +++++.+.+++|++++|+|- ..||+-++.+|.+.+++|+ +|.+
T Consensus 134 ~~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs 187 (287)
T PRK14173 134 LEPCTPAGVV----RLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHS 187 (287)
T ss_pred CCCCCHHHHH----HHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCC
Confidence 4678988875 45567799999999999997 5589999999999999987 7764
No 266
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.02 E-value=0.074 Score=48.64 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=61.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..||. +++++.|.++.|++|+|+|-++ ||+-++.+|.+.+++|+ +|.++. -|+.
T Consensus 136 ~~PcTp~avi----~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-ichs~T-------~~l~-------- 195 (284)
T PRK14170 136 FVPCTPAGII----ELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-IAHSRT-------KDLP-------- 195 (284)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC-------CCHH--------
Confidence 3578887774 4556789999999999999755 89999999999999987 877522 1111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhc
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 154 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~ 154 (262)
+.. ..+||+|-|.. .+.++++..+.
T Consensus 196 -----------------~~~-~~ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 196 -----------------QVA-KEADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred -----------------HHH-hhCCEEEEecCCcCccCHHHcCC
Confidence 111 36788887765 47777776664
No 267
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.99 E-value=0.091 Score=47.88 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=55.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC------CceecCCCccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN------EGEKINDSKEFWS 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~------~~~~~~~~~~il~ 132 (262)
++|+|+|.|++|..++..|.+.|..|. +.| .+.+.+.+..+........+ +....++.++..
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~-~~~----------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 69 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVT-LWA----------RDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEAL- 69 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEE-EEE----------CCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHH-
Confidence 479999999999999999999999875 666 34444444443211111011 122222122233
Q ss_pred cCceEEeeCCccCcccccchhc----c-CceEEEecCCCC
Q psy14499 133 IPCDILIPAAIEDQITINNANN----V-TAKIILEGANGP 167 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~----~-~~kiIve~AN~p 167 (262)
.+||++|-|.....+ .+.... + ..++|+.-.|+-
T Consensus 70 ~~~D~vi~~v~~~~~-~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 70 ADADLILVAVPSQAL-REVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred hCCCEEEEeCCHHHH-HHHHHHHHhhcCCCCEEEEEeecc
Confidence 489999999876432 222222 2 235777776653
No 268
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=94.96 E-value=0.14 Score=49.74 Aligned_cols=38 Identities=29% Similarity=0.526 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHC-----CCEEEEEeCCCc
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKA-----GAKIVAIQDDKT 92 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~-----g~~vv~V~D~~G 92 (262)
+.+.++|+|-|||.+|+.++|.+.+. +.++++|.++.+
T Consensus 124 ~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n 166 (477)
T PRK08289 124 DIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG 166 (477)
T ss_pred CCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence 36788999999999999999998764 689999976544
No 269
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.91 E-value=0.046 Score=46.21 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=27.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
+|+|+|.|.+|..+++.|.+.|..-+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998755588853
No 270
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=94.85 E-value=0.36 Score=46.74 Aligned_cols=98 Identities=19% Similarity=0.353 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---C-C------C
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---F-N------E 120 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~-~------~ 120 (262)
+..||+|.|||.+|+.+.|.+.+. ...||+|-|. .|++.+.-+.+ .+|.+.. + . +
T Consensus 74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~---------~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~ 144 (442)
T PLN02237 74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSMLGTFKADVKIVDDETISVD 144 (442)
T ss_pred ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC---------CCHHHHHHHHccccCCCCcCCceEECCCCEEEEC
Confidence 447999999999999999987643 5899988773 35544333222 3343321 0 0 1
Q ss_pred cee---cC--CCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 121 GEK---IN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 121 ~~~---~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
.+. .+ ++.++ | +.++|++++|+.. ..+.+.+... .||.|.-.|
T Consensus 145 Gk~I~V~~~~dp~~l~W~~~gVDiViE~TG~-f~s~e~a~~hl~aGAkkV~iSA 197 (442)
T PLN02237 145 GKPIKVVSNRDPLKLPWAELGIDIVIEGTGV-FVDGPGAGKHIQAGAKKVIITA 197 (442)
T ss_pred CEEEEEEEcCCchhCChhhcCCCEEEEccCh-hhhHHHHHHHHhCCCEEEEECC
Confidence 111 11 12232 3 4689999999964 4566655544 576554443
No 271
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.84 E-value=0.23 Score=46.67 Aligned_cols=128 Identities=19% Similarity=0.222 Sum_probs=66.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|.+|+++++.|.+.|..+. +.| ++++ ...+... ...+.+.. ..++..+.. .+||++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~-i~~-----~~~~---~~~~~~a-~~~~~~~~-----~~~~~~~~~-~~aDlV 64 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVF-IIG-----YDPS---AAQLARA-LGFGVIDE-----LAADLQRAA-AEADLI 64 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeE-EEE-----eCCC---HHHHHHH-hcCCCCcc-----cccCHHHHh-cCCCEE
Confidence 479999999999999999999998765 555 2222 1222111 11111110 011112233 589999
Q ss_pred eeCCccCcccccchhc-----cC-ceEEEecCCCCC--CHHHHHHHHHCCCeEec-cccccc--hhhHHHHHHHHhh
Q psy14499 139 IPAAIEDQITINNANN-----VT-AKIILEGANGPT--TTEADDILRDKGIILAP-DVITNA--GGVIVSYFEWVQN 204 (262)
Q Consensus 139 ipaa~~~~it~e~a~~-----~~-~kiIve~AN~p~--t~ea~~~l~~rgi~~iP-D~~aN~--GGvi~s~~E~~~~ 204 (262)
|.|.+...+ .+...+ ++ ..+|...+.... ..++ +.+..++..+++ -+++|+ .|+-.+..+..++
T Consensus 65 ilavP~~~~-~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~-~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g 139 (359)
T PRK06545 65 VLAVPVDAT-AALLAELADLELKPGVIVTDVGSVKGAILAEA-EALLGDLIRFVGGHPMAGSHKSGVAAARADLFEN 139 (359)
T ss_pred EEeCCHHHH-HHHHHHHhhcCCCCCcEEEeCccccHHHHHHH-HHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCC
Confidence 999987643 222222 22 235554333322 1222 222345667776 457764 4554444444333
No 272
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.78 E-value=0.13 Score=37.22 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=35.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHH
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPK 104 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~ 104 (262)
||+|+|.|.+|..+|..|.+.|.+|+ +.+....+. ..+|++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~--~~~~~~~ 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL--PGFDPDA 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS--TTSSHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh--hhcCHHH
Confidence 68999999999999999999999987 777666665 4477664
No 273
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.77 E-value=0.086 Score=48.24 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=52.8
Q ss_pred CeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCCceeeCCCCCCHHHH-HHHHHhcCCccCCCCceecCCCccccc-cCc
Q psy14499 59 SKISIQGFGNVGSVAANLFF-KAGAKIVAIQDDKTTIYNPNGFNIPKL-QKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D~~G~i~~~~GlD~~~l-~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~ 135 (262)
.+|+|+|.|++|+..+..+. ..+..+++|+| .|+++. ++..++.|-- ...++.++++. -+.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d----------~d~es~~la~A~~~Gi~------~~~~~~e~ll~~~dI 65 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVG----------IDPESDGLARARELGVK------TSAEGVDGLLANPDI 65 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEe----------CCcccHHHHHHHHCCCC------EEECCHHHHhcCCCC
Confidence 58999999999998765554 56899999999 565432 1233333211 11221334443 478
Q ss_pred eEEeeCCccCcccccchhcc---CceEEEe
Q psy14499 136 DILIPAAIEDQITINNANNV---TAKIILE 162 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~---~~kiIve 162 (262)
|+++.|++.. .+.+.+... .+.+|.+
T Consensus 66 DaV~iaTp~~-~H~e~a~~al~aGk~VIde 94 (285)
T TIGR03215 66 DIVFDATSAK-AHARHARLLAELGKIVIDL 94 (285)
T ss_pred CEEEECCCcH-HHHHHHHHHHHcCCEEEEC
Confidence 9999999754 555555544 3445444
No 274
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.76 E-value=0.57 Score=43.44 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
..++++|+|.|..++..++.|.. .+.+-+.|.+ -+.++..++.++...-.+. .....++.++.+ .++
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~----------R~~~~a~~~a~~~~~~~g~-~v~~~~~~~~av-~~a 195 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWA----------RDSAKAEALALQLSSLLGI-DVTAATDPRAAM-SGA 195 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEEC----------CCHHHHHHHHHHHHhhcCc-eEEEeCCHHHHh-ccC
Confidence 56799999999999999999974 6777676877 4666655554432110011 112223233344 489
Q ss_pred eEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecccc
Q psy14499 136 DILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 136 DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~ 188 (262)
||++-|+.. -+++.+..+. .+.+..=|+..|.-.|.+..+.++--.|+-|..
T Consensus 196 DiVvtaT~s~~p~i~~~~l~~-g~~i~~vg~~~p~~rEld~~~l~~a~~~vvD~~ 249 (326)
T TIGR02992 196 DIIVTTTPSETPILHAEWLEP-GQHVTAMGSDAEHKNEIDPAVIAKADHYVADRL 249 (326)
T ss_pred CEEEEecCCCCcEecHHHcCC-CcEEEeeCCCCCCceecCHHHHhccCEEEcCCH
Confidence 999999875 3344443322 344555677777655544333333333544543
No 275
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.73 E-value=0.099 Score=48.16 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.++|..||. +++++.|.+++|++++|+|=++ ||+-++.+|.+.|++|+ +|.+
T Consensus 146 ~~PcTp~avi----~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-vchs 199 (299)
T PLN02516 146 FLPCTPKGCL----ELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-VVHS 199 (299)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCC
Confidence 4679998864 4556779999999999999755 89999999999999988 8875
No 276
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.097 Score=47.96 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|| .+++++.+.+++|++++|+|-++ ||+-++.+|.+.+++|+ +|.+
T Consensus 138 ~~PcTp~av----~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-ichs 191 (288)
T PRK14171 138 FIPCTALGC----LAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-ICHS 191 (288)
T ss_pred CcCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCC
Confidence 467888886 45666779999999999999755 89999999999999987 8875
No 277
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.71 E-value=0.1 Score=47.97 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=61.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
.++|..||. +++++.+.+++|++++|+|-++ ||+-++.+|.+.+++|+ +|+++. -|+.
T Consensus 140 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~T-------~~l~--------- 198 (294)
T PRK14187 140 IPCTPKGCL----YLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSAT-------RDLA--------- 198 (294)
T ss_pred cCcCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCCC-------CCHH---------
Confidence 568888874 5667789999999999999755 89999999999999988 887522 1111
Q ss_pred CCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhc
Q psy14499 113 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 154 (262)
Q Consensus 113 g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~ 154 (262)
+. ...+||+|-|.. .+.++++.++.
T Consensus 199 ----------------~~-~~~ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 199 ----------------DY-CSKADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred ----------------HH-HhhCCEEEEccCCcCccCHHHcCC
Confidence 11 147788887765 47777776663
No 278
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.70 E-value=0.096 Score=47.91 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=44.4
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|+ .+++++.+.+++|++++|+|= ..||+-++.+|.+.+++|+ +|++
T Consensus 137 ~~PcTp~av----~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs 190 (284)
T PRK14190 137 FLPCTPHGI----LELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHS 190 (284)
T ss_pred CCCCCHHHH----HHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeC
Confidence 356888777 456677899999999999997 5599999999999999988 7764
No 279
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.60 E-value=0.11 Score=47.72 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.++|..|+ .+++++.|.+++|++++|+|=++ ||+-++.+|.+.|++|+ +|.+
T Consensus 138 ~PcTp~ai----i~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt-v~hs 190 (297)
T PRK14186 138 RSCTPAGV----MRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT-IAHS 190 (297)
T ss_pred CCCCHHHH----HHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCC
Confidence 46888777 45667779999999999999754 89999999999999987 7764
No 280
>PLN02712 arogenate dehydrogenase
Probab=94.57 E-value=0.11 Score=52.79 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
+.++|.|+|+|++|+.+++.|.+.|.+|++ .|. +... +..++.| .....+.+++...++|
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~-~dr----------~~~~--~~A~~~G-------v~~~~d~~e~~~~~aD 110 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLA-HSR----------SDHS--LAARSLG-------VSFFLDPHDLCERHPD 110 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEE-EeC----------CHHH--HHHHHcC-------CEEeCCHHHHhhcCCC
Confidence 457999999999999999999999998874 442 2111 1122222 1112223444434689
Q ss_pred EEeeCCccCcccccchhc-----cC-ceEEEecC
Q psy14499 137 ILIPAAIEDQITINNANN-----VT-AKIILEGA 164 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~-----~~-~kiIve~A 164 (262)
+++-|.+... +.+.+.. ++ -.+|++-.
T Consensus 111 vViLavP~~~-~~~vl~~l~~~~l~~g~iVvDv~ 143 (667)
T PLN02712 111 VILLCTSIIS-TENVLKSLPLQRLKRNTLFVDVL 143 (667)
T ss_pred EEEEcCCHHH-HHHHHHhhhhhcCCCCeEEEECC
Confidence 9999987543 2332222 22 34777764
No 281
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.57 E-value=0.08 Score=49.05 Aligned_cols=145 Identities=20% Similarity=0.302 Sum_probs=92.4
Q ss_pred CCChhHH-HHHHHHHHHHHHhC--------C-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCH
Q psy14499 33 RQKATGR-GVFIIGSKIASKIN--------L-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 102 (262)
Q Consensus 33 ~~~aTg~-Gv~~~~~~~~~~~g--------~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~ 102 (262)
-++..|+ ++..+....-|..| . -...-+|+|+|.|-||.+.|++..-.|++|+ |.| +++
T Consensus 133 MSeVAGrla~q~Ga~~lek~~GG~GvllgGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vt-ild----------~n~ 201 (371)
T COG0686 133 MSEVAGRLAAQAGAYYLEKTNGGKGVLLGGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVT-ILD----------LNI 201 (371)
T ss_pred HHHHhhhHHHHHHHHHHHhccCCceeEecCCCCCCCccEEEECCccccchHHHHHhccCCeeE-EEe----------cCH
Confidence 3667777 66555555444322 2 2466789999999999999999999999988 989 888
Q ss_pred HHHHHHHHhcC-CccCCCCceecCCCccccc--cCceEEe-----eCC-ccCcccccchhccC-ceEEEecCCCC-----
Q psy14499 103 PKLQKYVTFTR-SIKDFNEGEKINDSKEFWS--IPCDILI-----PAA-IEDQITINNANNVT-AKIILEGANGP----- 167 (262)
Q Consensus 103 ~~l~~~~~~~g-~~~~~~~~~~~~~~~~il~--~~~DIli-----paa-~~~~it~e~a~~~~-~kiIve~AN~p----- 167 (262)
++|..+...++ ++. +.++++..+-+ .++|++| |.+ .+..++.+..++++ ..+|++-|=-+
T Consensus 202 ~rl~~ldd~f~~rv~-----~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~E 276 (371)
T COG0686 202 DRLRQLDDLFGGRVH-----TLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFE 276 (371)
T ss_pred HHHhhhhHhhCceeE-----EEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCcee
Confidence 88877765433 111 12232222221 3677666 433 35778888888883 44555544222
Q ss_pred ---CCHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 168 ---TTTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 168 ---~t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
.|.-.+..+++.|+.+- -++|--|.+
T Consensus 277 t~~~TTh~~PtY~~~gvvhY--~VaNmPgaV 305 (371)
T COG0686 277 TSHPTTHDDPTYEVDGVVHY--GVANMPGAV 305 (371)
T ss_pred ccccccCCCCceeecCEEEE--ecCCCCccc
Confidence 13334566778887553 677777775
No 282
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.11 Score=47.39 Aligned_cols=91 Identities=21% Similarity=0.300 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
.++|..||. +++++.+.+++|++|+|+|=+ .||+-++.+|.+.+++|+ +|.++- -|+.
T Consensus 137 ~PcTp~avi----~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~T-------~nl~--------- 195 (282)
T PRK14166 137 LPCTPLGVM----KLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIKT-------KDLS--------- 195 (282)
T ss_pred cCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC-------CCHH---------
Confidence 578888875 455667999999999999975 489999999999999988 877421 0111
Q ss_pred CCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecC
Q psy14499 113 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 164 (262)
Q Consensus 113 g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~A 164 (262)
+. ...+||+|-|.. .+.++++.++. ..+|++-.
T Consensus 196 ----------------~~-~~~ADIvIsAvGkp~~i~~~~vk~--GavVIDvG 229 (282)
T PRK14166 196 ----------------LY-TRQADLIIVAAGCVNLLRSDMVKE--GVIVVDVG 229 (282)
T ss_pred ----------------HH-HhhCCEEEEcCCCcCccCHHHcCC--CCEEEEec
Confidence 11 147888888876 57788776653 23444433
No 283
>PRK07589 ornithine cyclodeaminase; Validated
Probab=94.56 E-value=0.64 Score=43.71 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=84.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+-...|++=...+---+++++..+ .-.+++|+|.|..++.-++.+.. +..+=|-|.+ .++++..++.+
T Consensus 104 dg~~lT~~RTaA~sala~~~Lar~-da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~----------r~~~~a~~~~~ 172 (346)
T PRK07589 104 EMTLLTALRTAATSALAAKYLARP-DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYD----------IDPAATAKLAR 172 (346)
T ss_pred cCccHHHHHHHHHHHHHHHHhccC-CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEe----------CCHHHHHHHHH
Confidence 445566655444444445555443 56799999999999999887765 4455554655 46666555544
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCccC----cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIED----QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~----~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
+-... ++ +....++.++.. .++||++=|+.+. ++..+.. +-.+.+..=|++.|-..|.+..+-++.-.|+ |
T Consensus 173 ~~~~~-~~-~v~~~~~~~~av-~~ADIIvtaT~S~~~~Pvl~~~~l-kpG~hV~aIGs~~p~~~Eld~~~l~~a~v~v-D 247 (346)
T PRK07589 173 NLAGP-GL-RIVACRSVAEAV-EGADIITTVTADKTNATILTDDMV-EPGMHINAVGGDCPGKTELHPDILRRARVFV-E 247 (346)
T ss_pred HHHhc-CC-cEEEeCCHHHHH-hcCCEEEEecCCCCCCceecHHHc-CCCcEEEecCCCCCCcccCCHHHHhcCEEEE-C
Confidence 32211 11 122233344444 5899999988642 2444433 2256688889999987777655545543344 6
Q ss_pred cc
Q psy14499 187 VI 188 (262)
Q Consensus 187 ~~ 188 (262)
..
T Consensus 248 ~~ 249 (346)
T PRK07589 248 YE 249 (346)
T ss_pred CH
Confidence 54
No 284
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.11 Score=47.39 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=61.3
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
..+.|..|+.. ++++.+.+++|++++|+|=+ .||+-++.+|.+.+++|+ +|.++- -|+.
T Consensus 137 ~~PcTp~aii~----lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt-~chs~T-------~dl~-------- 196 (282)
T PRK14180 137 LESCTPKGIMT----MLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHRFT-------TDLK-------- 196 (282)
T ss_pred cCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EEcCCC-------CCHH--------
Confidence 45788888754 55667999999999999975 589999999999999987 776421 0111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhc
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 154 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~ 154 (262)
+. ...+||+|-|.. .+.++++.++.
T Consensus 197 -----------------~~-~k~ADIvIsAvGkp~~i~~~~vk~ 222 (282)
T PRK14180 197 -----------------SH-TTKADILIVAVGKPNFITADMVKE 222 (282)
T ss_pred -----------------HH-hhhcCEEEEccCCcCcCCHHHcCC
Confidence 11 147888888765 57777766653
No 285
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.55 E-value=0.76 Score=41.88 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=31.4
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE-EEEEeC
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK-IVAIQD 89 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~-vv~V~D 89 (262)
++..+.. .+.+|+|.|.|.||..+++++...|++ |++ +|
T Consensus 156 l~~~~~~-~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~-~~ 195 (339)
T cd08239 156 LRRVGVS-GRDTVLVVGAGPVGLGALMLARALGAEDVIG-VD 195 (339)
T ss_pred HHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEE-EC
Confidence 3334433 489999999999999999999999999 774 44
No 286
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.54 E-value=0.47 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
..+.+|+|+|.|.||..+++++...|++|+++.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 368899999999999999999999999988543
No 287
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=94.53 E-value=0.68 Score=43.30 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=87.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+-...|++=.+.+=--+++++... .-.+++|+|.|..++.-++.+.+ ++.+=+-|.+ -+++...++..
T Consensus 105 d~~~lTa~RTaAasavAa~~LA~~-da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~----------r~~~~~e~~a~ 173 (330)
T COG2423 105 DATRLTALRTAAASAVAAKYLARK-DASTLAIIGAGAQARTQLEALKAVRDIREIRVYS----------RDPEAAEAFAA 173 (330)
T ss_pred cCccHHHHHHHHHHHHHHHHhccC-CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEc----------CCHHHHHHHHH
Confidence 445556655555444556666543 45689999999999999999977 4665565766 46666655543
Q ss_pred hcCCccCCC-CceecCCCccccccCceEEeeCCccC--cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 111 FTRSIKDFN-EGEKINDSKEFWSIPCDILIPAAIED--QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 111 ~~g~~~~~~-~~~~~~~~~~il~~~~DIlipaa~~~--~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
.-.. .++ .....++.++.. .++||++-|+.+. ++..+..+ -...|..=|+|.|--.|.+..+..|-=.++.|.
T Consensus 174 ~l~~--~~~~~v~a~~s~~~av-~~aDiIvt~T~s~~Pil~~~~l~-~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~ 249 (330)
T COG2423 174 RLRK--RGGEAVGAADSAEEAV-EGADIVVTATPSTEPVLKAEWLK-PGTHINAIGADAPGKRELDPEVLARADRVVVDS 249 (330)
T ss_pred HHHh--hcCccceeccCHHHHh-hcCCEEEEecCCCCCeecHhhcC-CCcEEEecCCCCcccccCCHHHHHhcCeEEEcC
Confidence 2111 111 123333233444 4899999999853 33443333 245677788888877776655555543455566
Q ss_pred cc
Q psy14499 188 IT 189 (262)
Q Consensus 188 ~a 189 (262)
..
T Consensus 250 ~~ 251 (330)
T COG2423 250 LE 251 (330)
T ss_pred HH
Confidence 54
No 288
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.51 E-value=0.25 Score=44.48 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=56.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc-cC-CC-CceecCCCccccccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI-KD-FN-EGEKINDSKEFWSIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~-~~-~~-~~~~~~~~~~il~~~~ 135 (262)
++|+|+|.|++|..++..|.+.|..|+ +.++ +.+.+....+..-.+ .+ .. .....++..++ .++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~-~~~r----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVT-LVAR----------RGAHLDALNENGLRLEDGEITVPVLAADDPAEL--GPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC----------ChHHHHHHHHcCCcccCCceeecccCCCChhHc--CCC
Confidence 479999999999999999999999887 4442 222333332221111 00 00 00111212222 589
Q ss_pred eEEeeCCccCcccccchhcc----Cc-eEEEecCCCCCCHH
Q psy14499 136 DILIPAAIEDQITINNANNV----TA-KIILEGANGPTTTE 171 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~----~~-kiIve~AN~p~t~e 171 (262)
|+++-|.....+ .+.+..+ .. ..|+-..|+.-..+
T Consensus 68 d~vila~k~~~~-~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 68 DLVILAVKAYQL-PAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred CEEEEecccccH-HHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 999999876543 3333333 22 46778888765444
No 289
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.51 E-value=0.12 Score=47.14 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+.|..||. +++++.+.+++|++++|+|=++ ||+-++.+|.+.+++|+ +|.+
T Consensus 137 ~PcTp~avi----~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-ichs 189 (282)
T PRK14182 137 RPCTPAGVM----RMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT-IAHS 189 (282)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCC
Confidence 578888774 4567779999999999999755 89999999999999887 7764
No 290
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.46 E-value=0.48 Score=44.46 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=27.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D 89 (262)
.||+|.|||.+|+.+.|.+.+ .+..+|+|-|
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd 34 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVND 34 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecC
Confidence 589999999999999999765 4689999977
No 291
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=94.39 E-value=0.58 Score=43.04 Aligned_cols=118 Identities=11% Similarity=0.100 Sum_probs=75.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
.-++++|+|.|.-++.-++.+.. ...+=|-|.| -++++..++.++.....+. ..+..++.++.. .++
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~----------r~~~~a~~f~~~~~~~~~~-~v~~~~~~~eav-~~a 183 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYS----------RNFDHARAFAERFSKEFGV-DIRPVDNAEAAL-RDA 183 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEEC----------CCHHHHHHHHHHHHHhcCC-cEEEeCCHHHHH-hcC
Confidence 67899999999999999998876 3555554655 4566655554432211011 223333344555 699
Q ss_pred eEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 136 DILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 136 DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
||++-|+.. -+++.+..+. .+.+..=|++.|-..|....+.++.-.++-|.
T Consensus 184 DIV~taT~s~~P~~~~~~l~p-g~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 184 DTITSITNSDTPIFNRKYLGD-EYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred CEEEEecCCCCcEecHHHcCC-CceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 999988764 4455554443 56788889999987777655555553344453
No 292
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=94.36 E-value=0.12 Score=52.92 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=62.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
-.+|.|+|+|++|..+++.|.+.|. +|+ +.| .+.+++....+ .|.... ..++..+.+ .++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~-~~d----------~~~~~~~~a~~-~g~~~~-----~~~~~~~~~-~~a 64 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVV-AVD----------RRAKSLELAVS-LGVIDR-----GEEDLAEAV-SGA 64 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEE-EEE----------CChhHHHHHHH-CCCCCc-----ccCCHHHHh-cCC
Confidence 4689999999999999999999883 655 556 34455443332 232100 011122333 489
Q ss_pred eEEeeCCccCcccccchhcc----C-ceEEEecCCCC--CCHHHHHHHHHCCCeEeccc
Q psy14499 136 DILIPAAIEDQITINNANNV----T-AKIILEGANGP--TTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~----~-~kiIve~AN~p--~t~ea~~~l~~rgi~~iPD~ 187 (262)
|+++.|.+...+ .+....+ + ..+|...+... +..+..+.+.+..+.++|.-
T Consensus 65 DvVilavp~~~~-~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~h 122 (735)
T PRK14806 65 DVIVLAVPVLAM-EKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGH 122 (735)
T ss_pred CEEEECCCHHHH-HHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecC
Confidence 999999876533 2222222 2 23666555433 23444445444455666544
No 293
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.36 E-value=0.15 Score=47.87 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..||.. ++++.+.+++|++++|+|=++ ||+-++.+|.+.+++|+ +|.+
T Consensus 193 ~~PCTp~avi~----LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-icHs 246 (345)
T PLN02897 193 FVSCTPKGCVE----LLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-TVHA 246 (345)
T ss_pred CcCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE-EEcC
Confidence 46789988854 556779999999999999755 89999999999999987 7764
No 294
>PRK10206 putative oxidoreductase; Provisional
Probab=94.36 E-value=0.31 Score=45.47 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=64.1
Q ss_pred CeEEEEcCCHHHH-HHHHHH-HH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 59 SKISIQGFGNVGS-VAANLF-FK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~-~~a~~L-~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
.||+|+|+|..++ .-+..+ .. .+..+++|+| .|.++. +..++.+ ....+++.+++++ .+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d----------~~~~~~-~~~~~~~------~~~~~~~~~ell~~~~ 64 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFR----------RHAKPE-EQAPIYS------HIHFTSDLDEVLNDPD 64 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEc----------CChhHH-HHHHhcC------CCcccCCHHHHhcCCC
Confidence 5899999999765 334544 33 4799999999 344332 3333322 2223343566764 57
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEeccc
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDV 187 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~ 187 (262)
.|+++-|++ +..+.+.+... ...+++|=.=.....|++++ .+++|+.+...+
T Consensus 65 iD~V~I~tp-~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~ 122 (344)
T PRK10206 65 VKLVVVCTH-ADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQ 122 (344)
T ss_pred CCEEEEeCC-chHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 899999886 44455554443 33477764333333555444 466787765433
No 295
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=94.30 E-value=0.27 Score=44.74 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=68.8
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEE-eCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAI-QDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V-~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
.+|+|.|+ |++|+.+++.+.+.+..+|+. .|..+ .|-|...+... .+.-.+......+.+++++..+|
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~-----~~~~~~~~~g~-----~v~v~~~~~~~~~l~~~~~~~~d 70 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEE-----EAENEAEVAGK-----EILLHGPSEREARIGEVFAKYPE 70 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccc-----cccchhhhccc-----ceeeeccccccccHHHHHhhcCC
Confidence 37999997 999999999998899999986 45322 23344443221 11000011111224455655588
Q ss_pred -EEeeCCccCcccc--cchhccCceEEEecCCCCCCHHHHHHHHH---CCCeEeccccc
Q psy14499 137 -ILIPAAIEDQITI--NNANNVTAKIILEGANGPTTTEADDILRD---KGIILAPDVIT 189 (262)
Q Consensus 137 -Ilipaa~~~~it~--e~a~~~~~kiIve~AN~p~t~ea~~~l~~---rgi~~iPD~~a 189 (262)
|+|+-+.+..... +-+.+.+..+|+.-.. ++++-.+.|.+ -++++.|.|..
T Consensus 71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG--~~~~~~~~l~~~~~i~~l~apNfSi 127 (275)
T TIGR02130 71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTG--GDREALAKLVADAKHPAVIAPNMAK 127 (275)
T ss_pred EEEEECCChHHHHHHHHHHHHCCCCEEEcCCC--CCHHHHHHHHHhcCCCEEEECcccH
Confidence 9999997765533 2233335556665443 44444444433 46777787755
No 296
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.28 E-value=0.13 Score=46.21 Aligned_cols=70 Identities=27% Similarity=0.331 Sum_probs=45.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|.|+|+|++|+.+++.|.+.|. .|+ +.| .+.+.+....+ .|.... ..+..++. +||
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~-~~d----------~~~~~~~~~~~-~g~~~~------~~~~~~~~--~aD 60 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVY-GYD----------HNELHLKKALE-LGLVDE------IVSFEELK--KCD 60 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEE-EEc----------CCHHHHHHHHH-CCCCcc------cCCHHHHh--cCC
Confidence 379999999999999999999885 444 455 45555444432 222111 11133443 499
Q ss_pred EEeeCCccCccc
Q psy14499 137 ILIPAAIEDQIT 148 (262)
Q Consensus 137 Ilipaa~~~~it 148 (262)
++|-|.+...+.
T Consensus 61 ~Vilavp~~~~~ 72 (275)
T PRK08507 61 VIFLAIPVDAII 72 (275)
T ss_pred EEEEeCcHHHHH
Confidence 999998765543
No 297
>KOG2741|consensus
Probab=94.27 E-value=0.3 Score=45.70 Aligned_cols=114 Identities=13% Similarity=0.232 Sum_probs=77.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH---CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc-c
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK---AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-S 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~---~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~ 132 (262)
...|+.|.|+|.+++.+++.|.. .+++|++|+|. +.+...+..++++ +|..+.+++-++++ +
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~----------s~~~A~~fAq~~~----~~~~k~y~syEeLakd 70 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP----------SLERAKEFAQRHN----IPNPKAYGSYEELAKD 70 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc----------cHHHHHHHHHhcC----CCCCccccCHHHHhcC
Confidence 46789999999999999999875 47999999983 5666666666543 44444455456666 4
Q ss_pred cCceEEeeCCccCcccccchhcc--Cce-EEEecCCCCCCHHHHHHH---HHCCCeEec
Q psy14499 133 IPCDILIPAAIEDQITINNANNV--TAK-IILEGANGPTTTEADDIL---RDKGIILAP 185 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~--~~k-iIve~AN~p~t~ea~~~l---~~rgi~~iP 185 (262)
-++|++.=.+ ++..+-+-+..+ +.| +.||=+=...-+|+++++ ++||+.++=
T Consensus 71 ~~vDvVyi~~-~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~me 128 (351)
T KOG2741|consen 71 PEVDVVYIST-PNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFME 128 (351)
T ss_pred CCcCEEEeCC-CCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEe
Confidence 6789876544 566666665554 333 777754444447787777 679987763
No 298
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.23 E-value=0.17 Score=47.72 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|+. +++++.+.+++|++|+|+|=.+ ||+-++.+|.+.+++|+ +|.+
T Consensus 210 f~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-icHs 263 (364)
T PLN02616 210 FVPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHS 263 (364)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE-EeCC
Confidence 4679998864 5667779999999999999754 89999999999999987 7764
No 299
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.22 E-value=0.14 Score=47.19 Aligned_cols=78 Identities=21% Similarity=0.153 Sum_probs=47.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-----CC-CceecCCCccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-----FN-EGEKINDSKEFWS 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-----~~-~~~~~~~~~~il~ 132 (262)
++|.|+|.|++|..++..|.+.|..|. +.+ -|.+.+....+.+..... +| .....++..+.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~----------r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 69 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVN-LWG----------RNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS 69 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEE-EEe----------cCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh
Confidence 369999999999999999999998886 655 244444444433222211 11 1111121223333
Q ss_pred cCceEEeeCCccCcc
Q psy14499 133 IPCDILIPAAIEDQI 147 (262)
Q Consensus 133 ~~~DIlipaa~~~~i 147 (262)
.++|+++-|..+..+
T Consensus 70 ~~~Dliiiavks~~~ 84 (326)
T PRK14620 70 DNATCIILAVPTQQL 84 (326)
T ss_pred CCCCEEEEEeCHHHH
Confidence 478999988776544
No 300
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.14 E-value=0.054 Score=43.39 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.+||+|.|.|.+|..+++.|.+.|..-+.+.|.
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 3579999999999999999999999866668884
No 301
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=94.14 E-value=0.11 Score=45.05 Aligned_cols=52 Identities=31% Similarity=0.312 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHH--HHCCCEEEEEeC
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLF--FKAGAKIVAIQD 89 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L--~~~g~~vv~V~D 89 (262)
.||-|..-+...=+.+|.. ...+|+|+|+|++|+.+++.+ ...|+++++++|
T Consensus 64 ~gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D 117 (213)
T PRK05472 64 VGYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFD 117 (213)
T ss_pred CCeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEE
Confidence 3566666555555555666 668999999999999999864 356899999998
No 302
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.10 E-value=0.2 Score=45.87 Aligned_cols=53 Identities=15% Similarity=0.284 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHH--CCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFK--AGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~--~g~~vv~V~D~ 90 (262)
-.++|..||.. ++++.|.+++|++++|+|- ..||+-++.+|.+ .+++|+ +|.+
T Consensus 137 ~~PcTp~av~~----ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt-vchs 192 (284)
T PRK14193 137 PLPCTPRGIVH----LLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT-LCHT 192 (284)
T ss_pred CCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE-EeCC
Confidence 35789888854 5567799999999999996 5599999999998 789887 8875
No 303
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.09 E-value=0.19 Score=46.20 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=63.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHHHHHH
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQK 107 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~GlD~~~l~~ 107 (262)
-.+.|..|+. +++++.+.+++|++|+|+|=+ .||+-++.+|.++ +++|+ +|.++- -|+.
T Consensus 136 ~~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~T-------~~l~---- 199 (297)
T PRK14167 136 FKPCTPHGIQ----KLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT-VCHSRT-------DDLA---- 199 (297)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE-EeCCCC-------CCHH----
Confidence 3568888774 556777999999999999975 4899999999887 78877 776421 0111
Q ss_pred HHHhcCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecC
Q psy14499 108 YVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 164 (262)
Q Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~A 164 (262)
+. ...+||+|-|.. .+.++++.++. ..+|++..
T Consensus 200 ---------------------~~-~~~ADIvIsAvGkp~~i~~~~ik~--gaiVIDvG 233 (297)
T PRK14167 200 ---------------------AK-TRRADIVVAAAGVPELIDGSMLSE--GATVIDVG 233 (297)
T ss_pred ---------------------HH-HhhCCEEEEccCCcCccCHHHcCC--CCEEEEcc
Confidence 11 147888888765 57777766663 23444433
No 304
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.09 E-value=0.14 Score=44.09 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++..+|.|+|.|.+|..+++.|...|..-+.+.|.
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~ 51 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDH 51 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 57899999999999999999999999877768875
No 305
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.05 E-value=0.084 Score=41.60 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=43.6
Q ss_pred eEEEEc-CCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 60 KISIQG-FGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 60 ~v~IqG-fG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
||+|+| .|.+|+.++++|.++ .+.++.+..++- ..|..+...... ...+.+....+...+.+ .++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~Dv 69 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----SAGKPLSEVFPH------PKGFEDLSVEDADPEEL-SDVDV 69 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----TTTSBHHHTTGG------GTTTEEEBEEETSGHHH-TTESE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----ccCCeeehhccc------cccccceeEeecchhHh-hcCCE
Confidence 789999 999999999999884 678887776422 245555443221 11111111111011222 68999
Q ss_pred EeeCCccC
Q psy14499 138 LIPAAIED 145 (262)
Q Consensus 138 lipaa~~~ 145 (262)
++-|+..+
T Consensus 70 vf~a~~~~ 77 (121)
T PF01118_consen 70 VFLALPHG 77 (121)
T ss_dssp EEE-SCHH
T ss_pred EEecCchh
Confidence 99997643
No 306
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.02 E-value=1.6 Score=42.19 Aligned_cols=40 Identities=33% Similarity=0.346 Sum_probs=32.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHH
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~ 109 (262)
.++|.|+|.|.||..+|..|.+ |+.|+ +.| +|.+++..+.
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~-g~D----------~~~~~ve~l~ 45 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVV-GFD----------VNKKRILELK 45 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEE-EEe----------CCHHHHHHHH
Confidence 4789999999999999999876 68887 667 6777766655
No 307
>KOG2018|consensus
Probab=94.01 E-value=0.21 Score=46.39 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=30.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++.=|+|+|+|.||++++.+|.+-|.+=+-|.|
T Consensus 71 kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVD 105 (430)
T KOG2018|consen 71 KLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVD 105 (430)
T ss_pred HhcCcEEEEEecCchhHHHHHHHHHhcCceEEEec
Confidence 47889999999999999999999999986665776
No 308
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=93.90 E-value=0.38 Score=37.86 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=55.9
Q ss_pred CeEEEEc----CCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 59 SKISIQG----FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 59 ~~v~IqG----fG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++|+|+| -++.|..+.+.|.+.|++|+.|.-.. +.+.+ ...+++..++ ..+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~---------------------~~i~G---~~~y~sl~e~-p~~ 55 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKG---------------------GEILG---IKCYPSLAEI-PEP 55 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTC---------------------SEETT---EE-BSSGGGC-SST
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCc---------------------eEECc---EEeeccccCC-CCC
Confidence 5899999 58999999999999999998763221 11111 1222223332 468
Q ss_pred ceEEeeCCccCcccc--cchhccCce-EEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQITI--NNANNVTAK-IILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~it~--e~a~~~~~k-iIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
.|+++-|......-+ +.+..+.++ +++-.. ...+++.+.+++.|+.++
T Consensus 56 iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 56 IDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG--AESEELIEAAREAGIRVI 106 (116)
T ss_dssp -SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEE
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEE
Confidence 888888876533321 223333344 333333 567889999999999997
No 309
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.88 E-value=0.22 Score=45.72 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=43.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHC----CCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKA----GAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~----g~~vv~V~D~ 90 (262)
-.+.|..||. +++++.+.++.|++|+|+|-++ ||+-++.+|.+. +++|+ +|.+
T Consensus 136 ~~PcTp~av~----~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs 193 (293)
T PRK14185 136 FVSATPNGIL----ELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT-VCHS 193 (293)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE-EecC
Confidence 4578888874 4566778999999999999755 899999999988 68877 7765
No 310
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=93.84 E-value=3.6 Score=38.55 Aligned_cols=40 Identities=0% Similarity=-0.125 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q psy14499 219 LNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHK 258 (262)
Q Consensus 219 l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~~a~~ 258 (262)
+-........+.+..+++.+.+|++.+..++.+-+....+
T Consensus 207 l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~ 246 (342)
T PRK12557 207 VTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMAS 246 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4444455667778888899999999999999988876554
No 311
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=93.76 E-value=0.54 Score=42.51 Aligned_cols=119 Identities=17% Similarity=0.231 Sum_probs=70.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
.++|+|.|+ |.+|+.+++.+.+. +..+++..|+.+.... |-|..++.- .+.+ ..++.+.......++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~--g~d~ge~~g----~~~~-----gv~v~~~~~~~~~~~ 70 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSL--GSDAGELAG----LGLL-----GVPVTDDLLLVKADA 70 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcccc--ccchhhhcc----cccc-----CceeecchhhcccCC
Confidence 468999999 99999999999875 6999999997665432 334443311 0111 112221223345799
Q ss_pred eEEeeCCccCccc--ccchhccCceEEEecCCCCCCHHHHH----HHHHCCCeEeccccc
Q psy14499 136 DILIPAAIEDQIT--INNANNVTAKIILEGANGPTTTEADD----ILRDKGIILAPDVIT 189 (262)
Q Consensus 136 DIlipaa~~~~it--~e~a~~~~~kiIve~AN~p~t~ea~~----~l~~rgi~~iPD~~a 189 (262)
||+|+-+.+...- -+.+.+.+-++|++-.. +|++-.+ ..++-++++.|.|..
T Consensus 71 DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTG--f~~e~~~~l~~~a~~v~vv~a~NfSi 128 (266)
T COG0289 71 DVLIDFTTPEATLENLEFALEHGKPLVIGTTG--FTEEQLEKLREAAEKVPVVIAPNFSL 128 (266)
T ss_pred CEEEECCCchhhHHHHHHHHHcCCCeEEECCC--CCHHHHHHHHHHHhhCCEEEeccchH
Confidence 9999999764332 22333334445654332 3444333 334457788888765
No 312
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=93.73 E-value=1.5 Score=41.08 Aligned_cols=96 Identities=22% Similarity=0.360 Sum_probs=58.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Cceec-
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGEKI- 124 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~~~- 124 (262)
.+|+|.|||.+|+.+.+.+.+. ..+++++.|. ..|++.+.-+.+ .+|++..- . +.+.+
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~--------~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~ 74 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP--------AGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIR 74 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC--------CCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEE
Confidence 6899999999999999998764 6899988762 135554433322 34433210 0 11111
Q ss_pred -C---CCccc-cccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 125 -N---DSKEF-WSIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 125 -~---~~~~i-l~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
. +++++ |+ ++|++++|+.. ..+.+-+... .|| ++..++
T Consensus 75 v~~~~~~~~~~w~-gvDiVle~tG~-~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 75 TTQNKAIADTDWS-GCDVVIEASGV-MKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred EEecCChhhCCcc-CCCEEEEccch-hhcHHHHHHHHHCCCEEEEECCC
Confidence 1 23332 44 99999999964 4566666554 566 444444
No 313
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=93.71 E-value=0.26 Score=48.07 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c-CceEEeeCCccCc
Q psy14499 69 VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I-PCDILIPAAIEDQ 146 (262)
Q Consensus 69 VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~-~~DIlipaa~~~~ 146 (262)
+|+++|+.|.+.|++|+ |.| .++++..++.+..+. + .+.+..+++.++.+ . .+|+++-|=+.+.
T Consensus 1 MG~~mA~nL~~~G~~V~-v~n----------rt~~~~~~l~~~~g~--~-~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~ 66 (459)
T PRK09287 1 MGKNLALNIASHGYTVA-VYN----------RTPEKTDEFLAEEGK--G-KKIVPAYTLEEFVASLEKPRKILLMVKAGA 66 (459)
T ss_pred CcHHHHHHHHhCCCeEE-EEC----------CCHHHHHHHHHhhCC--C-CCeEeeCCHHHHHhhCCCCCEEEEECCCch
Confidence 58899999999999987 878 577777777653221 0 02233333455543 2 5898887754433
Q ss_pred ccccc----hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccc------------cchhhHHHHHHHHhh---
Q psy14499 147 ITINN----ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT------------NAGGVIVSYFEWVQN--- 204 (262)
Q Consensus 147 it~e~----a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~a------------N~GGvi~s~~E~~~~--- 204 (262)
...+. .+.+ ..++|+++.|... |.+..+.++++|+.++--.+. -.||--. .++.++.
T Consensus 67 ~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~-a~~~~~piL~ 145 (459)
T PRK09287 67 PVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKE-AYELVAPILE 145 (459)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHH-HHHHHHHHHH
Confidence 32222 2333 4679999999754 555668889999999833332 1233211 1222221
Q ss_pred -hc-CC-------CC-C-------HHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHH
Q psy14499 205 -LS-NL-------LW-T-------EQEINLRLNNIICNAFDAIWELAN-TKKVSLRTAAFII 248 (262)
Q Consensus 205 -~~-~~-------~~-~-------~~~v~~~l~~~~~~~~~~v~~~a~-~~~~~~r~aa~~~ 248 (262)
.. .. .| . -.-|...++..+-..+.+.+..++ +.|+++.+.+.++
T Consensus 146 ~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~ 207 (459)
T PRK09287 146 KIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF 207 (459)
T ss_pred HHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 10 00 11 0 123455677777777888888888 4788877766554
No 314
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=93.57 E-value=0.35 Score=45.67 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=28.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC-----CCEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA-----GAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~-----g~~vv~V~D~ 90 (262)
-.||+|.|||.+|+.+.|.+.+. ...||+|-|.
T Consensus 3 ~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 3 PIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred ceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 36999999999999999998764 5899999883
No 315
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.55 E-value=0.24 Score=45.40 Aligned_cols=52 Identities=19% Similarity=0.320 Sum_probs=43.2
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHC----CCEEEEEeCC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKA----GAKIVAIQDD 90 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~----g~~vv~V~D~ 90 (262)
.+.|..||.. ++++.|.+++|++++|+|=++ ||+-++.+|.+. +++|+ +|.+
T Consensus 133 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt-vchs 189 (287)
T PRK14181 133 IPCTPAGIIE----LLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT-LLHS 189 (287)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE-EeCC
Confidence 5788888754 566779999999999999754 899999999998 78877 7764
No 316
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.52 E-value=0.48 Score=43.64 Aligned_cols=106 Identities=12% Similarity=0.199 Sum_probs=59.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCc--------eecCCCccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG--------EKINDSKEF 130 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~--------~~~~~~~~i 130 (262)
++|+|+|.|.+|..+|..|.+.|..|+ +.|+ +. ......+..-.+.+.++. -...+..+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~-~~~r----------~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVT-LIGR----------AR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAA 70 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEE-EEec----------HH-HHHHHHhcCceeecCCCcceecccceeEeccChhh
Confidence 579999999999999999999999887 4452 11 111222211111111110 001101122
Q ss_pred cccCceEEeeCCccCcccccchhcc-----CceEEEecCCCCCCH-HHHHHHHH
Q psy14499 131 WSIPCDILIPAAIEDQITINNANNV-----TAKIILEGANGPTTT-EADDILRD 178 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~p~t~-ea~~~l~~ 178 (262)
. .++|+++.|.....+ .+....+ .-.+|+...|+.-+. ...+.+.+
T Consensus 71 ~-~~~D~vil~vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~ 122 (341)
T PRK08229 71 L-ATADLVLVTVKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPG 122 (341)
T ss_pred c-cCCCEEEEEecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCC
Confidence 2 489999998765433 3333333 235788888877653 34455543
No 317
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.50 E-value=0.25 Score=45.67 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
++++|+|+|.|+||+.+|-.|...+. .++ +.|
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~-L~D 38 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELV-IID 38 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEe
Confidence 56799999999999999999988886 444 777
No 318
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=93.45 E-value=0.84 Score=42.86 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~ 133 (262)
+..||+|+|. ..|+.-++.+.+. +++++||+| .|.++..+..++.+ +. .+++.++++. .
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d----------~~~erA~~~A~~~g-i~------~y~~~eell~d~ 63 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILA----------QGSERSRALAHRLG-VP------LYCEVEELPDDI 63 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEc----------CCHHHHHHHHHHhC-CC------ccCCHHHHhcCC
Confidence 3579999999 5698888888774 699999999 68888877777654 11 2233456653 4
Q ss_pred CceEEe-eCCccCcccccchhcc---CceEEEecCCCCCC-HHHHHHH---HHCCCeEe
Q psy14499 134 PCDILI-PAAIEDQITINNANNV---TAKIILEGANGPTT-TEADDIL---RDKGIILA 184 (262)
Q Consensus 134 ~~DIli-paa~~~~it~e~a~~~---~~kiIve~AN~p~t-~ea~~~l---~~rgi~~i 184 (262)
++|++. |.+..+..+.+.+... ...+++|= |++ .|+++++ +++|+.+.
T Consensus 64 Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EK---Pla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 64 DIACVVVRSAIVGGQGSALARALLARGIHVLQEH---PLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcC---CCCHHHHHHHHHHHHHcCCEEE
Confidence 555554 3334455666665554 34577775 443 4555443 66788775
No 319
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.45 E-value=1.2 Score=40.95 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCE-EEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAK-IVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~-vv~V~D 89 (262)
.+.+|+|.|.|.||..++++++..|++ |+ ++|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi-~~~ 201 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIV-CAD 201 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEE-EEe
Confidence 688999999999999999999999995 55 555
No 320
>PLN02775 Probable dihydrodipicolinate reductase
Probab=93.41 E-value=0.39 Score=43.97 Aligned_cols=114 Identities=13% Similarity=0.183 Sum_probs=69.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH-HHHHHHHhcCCccCCCCceec--CCCcccc-c
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP-KLQKYVTFTRSIKDFNEGEKI--NDSKEFW-S 132 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~-~l~~~~~~~g~~~~~~~~~~~--~~~~~il-~ 132 (262)
..+|+|.|+ |++|+.+++.+.+.+..+|+..|... +|-|.. .+.. . +.... ++.++++ +
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~-----~~~~~~~~~~g----------~-~v~~~~~~dl~~~l~~ 74 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGP-----AGVGVTVEVCG----------V-EVRLVGPSEREAVLSS 74 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEecccc-----ccccccceecc----------c-eeeeecCccHHHHHHH
Confidence 469999997 99999999999889999999888533 333322 1111 0 11111 2233444 3
Q ss_pred c---Cce-EEeeCCccCcccc--cchhccCceEEEecCCCCCCHHHHHHHHHC---CCeEeccccc
Q psy14499 133 I---PCD-ILIPAAIEDQITI--NNANNVTAKIILEGANGPTTTEADDILRDK---GIILAPDVIT 189 (262)
Q Consensus 133 ~---~~D-Ilipaa~~~~it~--e~a~~~~~kiIve~AN~p~t~ea~~~l~~r---gi~~iPD~~a 189 (262)
. .+| |+|+-+.+..... +.+...+.++|++-.. ++++-.+.+.+. ++++.|.|..
T Consensus 75 ~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG--~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 75 VKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTG--GDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred hhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCC--CCHHHHHHHHhcCCccEEEECcccH
Confidence 3 688 9999997665533 2334446667776554 455533334333 6777777755
No 321
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.34 E-value=0.15 Score=46.66 Aligned_cols=35 Identities=31% Similarity=0.520 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+..+|+|+|.|.+|..+|+.|...|.+-+.+.|.
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~ 51 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDT 51 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 57889999999999999999999999988878885
No 322
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.23 E-value=0.19 Score=42.85 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=24.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|-||.-+|-.|.+.|++|+ ..|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~-g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVI-GVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEE-EE-
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEE-EEe
Confidence 589999999999999999999999999 456
No 323
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=93.21 E-value=0.16 Score=45.39 Aligned_cols=105 Identities=16% Similarity=0.237 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC----EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA----KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~----~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
..++|.|+|+|++|+++++-|.+.+. ++. ++|. +.+++ +.....++.++.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~-~~~~----------~~~~~--------------~~~~~~~~~~~~- 55 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIY-YHTP----------SKKNT--------------PFVYLQSNEELA- 55 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEE-EECC----------ChhcC--------------CeEEeCChHHHH-
Confidence 45799999999999999999998762 243 4442 11110 011122133444
Q ss_pred cCceEEeeCCccCccc---ccchhccCceEEEecCCCCCCHHHHHHHHH--CCCeEeccc
Q psy14499 133 IPCDILIPAAIEDQIT---INNANNVTAKIILEGANGPTTTEADDILRD--KGIILAPDV 187 (262)
Q Consensus 133 ~~~DIlipaa~~~~it---~e~a~~~~~kiIve~AN~p~t~ea~~~l~~--rgi~~iPD~ 187 (262)
.+||++|-|..+..+. .+..+.++.+.|+.-+++-.....++.+.. +-+.++|..
T Consensus 56 ~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~ 115 (260)
T PTZ00431 56 KTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPNT 115 (260)
T ss_pred HhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCCc
Confidence 4789999887654432 122222334566666666554444454422 224455543
No 324
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.19 E-value=0.24 Score=46.32 Aligned_cols=96 Identities=14% Similarity=0.196 Sum_probs=55.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|+|+|. |.+|+.+++.|.+. +.+++++++.. +.|-.+.+ ....+....... +++.++....++|
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-----~~g~~l~~------~~~~~~~~~~~~-~~~~~~~~~~~vD 70 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-----SAGKPLSD------VHPHLRGLVDLV-LEPLDPEILAGAD 70 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-----ccCcchHH------hCcccccccCce-eecCCHHHhcCCC
Confidence 69999997 99999999999886 78999888731 11111111 011111110111 1112222235799
Q ss_pred EEeeCCccCcccccchhcc--CceEEEecCCCC
Q psy14499 137 ILIPAAIEDQITINNANNV--TAKIILEGANGP 167 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~--~~kiIve~AN~p 167 (262)
+++-|++.+ .+.+.+..+ ..+.|++.++..
T Consensus 71 ~Vf~alP~~-~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 71 VVFLALPHG-VSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred EEEECCCcH-HHHHHHHHHHhCCCEEEECCccc
Confidence 999988653 555665555 245777777554
No 325
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.92 E-value=0.55 Score=45.65 Aligned_cols=34 Identities=32% Similarity=0.628 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..+++|+|.|+|.-|+++++.|.+.|++|+ ++|.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~-v~D~ 38 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVT-VSDD 38 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEE-EEcC
Confidence 458999999999999999999999999988 8873
No 326
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.69 E-value=0.4 Score=49.26 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=28.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..+...|+.|+ +.|
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d 343 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVI-MKD 343 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEE-EEe
Confidence 579999999999999999999999988 878
No 327
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.68 E-value=0.34 Score=44.43 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=26.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~ 90 (262)
++|+|+|.|.||+.++..|...|. .++ +.|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~-l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELV-LIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence 379999999999999999999884 555 7773
No 328
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.68 E-value=0.39 Score=39.11 Aligned_cols=30 Identities=47% Similarity=0.653 Sum_probs=25.3
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCC--CEEEEEeC
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAG--AKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g--~~vv~V~D 89 (262)
++|+|+|. |+||++++-.|...+ -.++ +.|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~-L~D 33 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIV-LID 33 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEE-EEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceE-Eec
Confidence 48999999 999999999998876 4555 777
No 329
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=92.62 E-value=0.5 Score=45.28 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEcC-----------------CHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 54 LNIINSKISIQGF-----------------GNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 54 ~~l~~~~v~IqGf-----------------G~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.++++++|+|.|- |.+|.++|+.|.+.|++|+. .+..
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~-v~~~ 237 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTL-VSGP 237 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEE-eCCC
Confidence 5789999999987 88999999999999999984 4443
No 330
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.57 E-value=0.16 Score=47.19 Aligned_cols=33 Identities=36% Similarity=0.437 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~ 90 (262)
+.++|+|+|.|+||..++..+...|. . +.+.|.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi 38 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI 38 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence 45799999999999999999988885 6 448783
No 331
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.53 E-value=0.37 Score=44.41 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=42.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHC----CCEEEEEeCC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKA----GAKIVAIQDD 90 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~----g~~vv~V~D~ 90 (262)
.+.|..||. +++++.|.+++|++|+|+|= ..||+-++.+|.++ +++|. +|.+
T Consensus 141 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt-v~hs 197 (297)
T PRK14168 141 LPCTPAGIQ----EMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT-IVHT 197 (297)
T ss_pred cCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE-EecC
Confidence 578888775 45567799999999999997 45899999999988 68877 7764
No 332
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.44 E-value=0.2 Score=48.66 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+++++|+|.|+|.-|.+++++|.+.|++|+ ++|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~ 39 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLF 39 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcC
Confidence 568899999999999999999999999988 8884
No 333
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=92.42 E-value=0.07 Score=51.82 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=28.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEE
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIV 85 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv 85 (262)
.|++++|+|+|+|+.|++.|..|...|.+|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 3799999999999999998888888898877
No 334
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.41 E-value=0.78 Score=41.38 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=26.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|++|..++..|.+.|..|+ +.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~-~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVT-FLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceE-EEe
Confidence 479999999999999999999998877 444
No 335
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=92.39 E-value=0.58 Score=43.30 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=67.8
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
...||.-.++++ .+.|..=.|.+|+|.+. |.||+-+.++-.-+|++||+++-+ .++..-+++..
T Consensus 131 LGmpG~TAY~gL----l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg-----------~eK~~~l~~~l 195 (340)
T COG2130 131 LGMPGLTAYFGL----LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG-----------AEKCDFLTEEL 195 (340)
T ss_pred cCCchHHHHHHH----HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC-----------HHHHHHHHHhc
Confidence 344444444444 34566557999999996 999999999888899999999974 23332222222
Q ss_pred C--CccCCCCceecCCCcccc----ccCceEEeeCCccCcccccchhc--cCceEEEecC
Q psy14499 113 R--SIKDFNEGEKINDSKEFW----SIPCDILIPAAIEDQITINNANN--VTAKIILEGA 164 (262)
Q Consensus 113 g--~~~~~~~~~~~~~~~~il----~~~~DIlipaa~~~~it~e~a~~--~~~kiIve~A 164 (262)
| ..-+|... + ..+.| --..||++++-.+++.+. -.+. .++|+++-|+
T Consensus 196 GfD~~idyk~~---d-~~~~L~~a~P~GIDvyfeNVGg~v~DA-v~~~ln~~aRi~~CG~ 250 (340)
T COG2130 196 GFDAGIDYKAE---D-FAQALKEACPKGIDVYFENVGGEVLDA-VLPLLNLFARIPVCGA 250 (340)
T ss_pred CCceeeecCcc---c-HHHHHHHHCCCCeEEEEEcCCchHHHH-HHHhhccccceeeeee
Confidence 2 11122111 1 22222 246799999988777653 2223 3688877765
No 336
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.38 E-value=0.36 Score=43.78 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=38.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
.+++++++|.|. +.+|+.+|+.|.+.|+.++-|+- +.++|.++.++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR-----------~~~kL~~la~~ 49 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVAR-----------REDKLEALAKE 49 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeC-----------cHHHHHHHHHH
Confidence 357889999996 89999999999999999997776 56777776553
No 337
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.35 E-value=1.1 Score=42.80 Aligned_cols=113 Identities=22% Similarity=0.369 Sum_probs=65.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEe-C-------CCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQ-D-------DKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~-D-------~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
.+++|+|+|-||.-+|-.+.+.|++|+|+= | .+|..|=.+ .+.+++++...+.|.+. + -+++ +-
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lr----a--Ttd~-~~ 81 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLR----A--TTDP-EE 81 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCce----E--ecCh-hh
Confidence 899999999999999999999999999762 1 133333211 33444333333333332 1 1112 23
Q ss_pred cccCceEEeeCCccCccc-cc--------chhcc------CceEEEecCCCCC-CHHHH-HHHHHCC
Q psy14499 131 WSIPCDILIPAAIEDQIT-IN--------NANNV------TAKIILEGANGPT-TTEAD-DILRDKG 180 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it-~e--------~a~~~------~~kiIve~AN~p~-t~ea~-~~l~~rg 180 (262)
++ +||+++=|=++-.-. .+ .++++ ..-+|.|+.=-|= |.+.. .+|+++.
T Consensus 82 l~-~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~s 147 (436)
T COG0677 82 LK-ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERS 147 (436)
T ss_pred cc-cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcC
Confidence 33 999998775542222 11 12222 3458889888874 55554 4555534
No 338
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.34 E-value=0.13 Score=47.39 Aligned_cols=54 Identities=20% Similarity=0.422 Sum_probs=42.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCcee-eC---CCCCCHHHHHHHHH
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI-YN---PNGFNIPKLQKYVT 110 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i-~~---~~GlD~~~l~~~~~ 110 (262)
|++++|+|+|+|+=|.+-+..|++.|..|+ |-=+.|.. |+ .+|+++..+.+..+
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~~v~ea~k 73 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVYTVEEAAK 73 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEeecHHHHhh
Confidence 699999999999999999999999999976 66555544 43 47777666555543
No 339
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=92.32 E-value=0.28 Score=45.30 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=28.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|+|+|.|.+|..+|+.|...|..-+.+.|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 5899999999999999999999877778884
No 340
>PRK10537 voltage-gated potassium channel; Provisional
Probab=92.27 E-value=0.78 Score=43.85 Aligned_cols=104 Identities=8% Similarity=0.034 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccCCCCceecCCCcccc-c--
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDFNEGEKINDSKEFW-S-- 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~~~~~~~~~~~~~il-~-- 132 (262)
....++|.|+|.+|+.+++.|.+.|..++ |.|. | +..+..++.-. +.+ +. + .++.+ +
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~~vv-VId~----------d--~~~~~~~~g~~vI~G--D~---t-d~e~L~~Ag 299 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQAVT-VIVP----------L--GLEHRLPDDADLIPG--DS---S-DSAVLKKAG 299 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEE-EEEC----------c--hhhhhccCCCcEEEe--CC---C-CHHHHHhcC
Confidence 35679999999999999999999998887 4442 1 11111111100 100 11 1 12222 1
Q ss_pred -cCceEEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 133 -IPCDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 133 -~~~DIlipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
.+|+.++-++..+..|- ..++++ ++|+|+...| ++..+.|++.|+..
T Consensus 300 I~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~----~~~~~~L~~~GaD~ 352 (393)
T PRK10537 300 AARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVND----SKNLEKIKRVHPDM 352 (393)
T ss_pred cccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEECC----HHHHHHHHhcCCCE
Confidence 37888888776544333 344555 4677776554 56677788877543
No 341
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=92.26 E-value=0.67 Score=44.21 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=36.1
Q ss_pred CeEEEEc-CCHHHHHHHHHHHHC--CCEEEEEe-CCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 59 SKISIQG-FGNVGSVAANLFFKA--GAKIVAIQ-DDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 59 ~~v~IqG-fG~VG~~~a~~L~~~--g~~vv~V~-D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
++|+|.| .|++|+...+.+.+. .++|++++ + -+++.+.+..++.+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~----------~n~~~l~~q~~~f~ 50 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAG----------KNVELLAEQAREFR 50 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcC----------CCHHHHHHHHHHhC
Confidence 6899999 899999999998764 78999998 5 56777766665543
No 342
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.19 E-value=0.4 Score=43.40 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=27.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|...|..|+ +.|
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d 33 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVD 33 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEE-EEe
Confidence 589999999999999999999999987 667
No 343
>KOG2336|consensus
Probab=92.17 E-value=0.23 Score=45.41 Aligned_cols=43 Identities=28% Similarity=0.519 Sum_probs=35.8
Q ss_pred HHHHHHhCC-----CCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 46 SKIASKINL-----NIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 46 ~~~~~~~g~-----~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
.-+++++|+ .++...|+|+|.|.||+-.|++|.+.|+ |++ ..|
T Consensus 65 LMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLl-LfD 113 (422)
T KOG2336|consen 65 LMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLL-LFD 113 (422)
T ss_pred HHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEE-Eee
Confidence 456788886 3789999999999999999999999995 554 555
No 344
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.10 E-value=0.53 Score=48.39 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..+...|+.|+ +.|
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d 343 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIV-MKD 343 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEE-EEe
Confidence 479999999999999999999999988 878
No 345
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.92 E-value=0.43 Score=44.18 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.-++|+|+|.|.+|+++|..+...|+.|+ +.|.
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~-l~D~ 34 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVV-LKDI 34 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceE-EEeC
Confidence 34789999999999999999988779988 8884
No 346
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.76 E-value=0.49 Score=48.83 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=28.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..+...|+.|+ +.|
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~-l~d 365 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTV-LKD 365 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEE-Eec
Confidence 579999999999999999999999988 778
No 347
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.54 E-value=0.97 Score=41.56 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=25.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
++|+|+|.|.||..+|..|...|. .-+.+.|
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D 32 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVD 32 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence 479999999999999999999984 3344777
No 348
>PRK06849 hypothetical protein; Provisional
Probab=91.53 E-value=0.91 Score=42.76 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.++|+|.|.+. +|..+++.|.+.|++|+ ++|+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi-~~d~ 36 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVI-LADS 36 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence 468999999986 89999999999999999 5553
No 349
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.40 E-value=0.35 Score=44.26 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+++|.|+|.|++|+.+|+.|.+.|..|. +.|+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r 35 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSR 35 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeC
Confidence 46789999999999999999999999987 6664
No 350
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.26 E-value=0.72 Score=47.31 Aligned_cols=30 Identities=37% Similarity=0.461 Sum_probs=26.8
Q ss_pred CeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFF-KAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..+. ..|+.|+ +.|
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~-l~d 335 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVR-IKD 335 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEE-EEe
Confidence 47999999999999999887 5899987 777
No 351
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=91.22 E-value=0.63 Score=36.35 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=26.6
Q ss_pred eEEEEcC-CHHHHHHHHHHHH-CCCEEEEEeCC
Q psy14499 60 KISIQGF-GNVGSVAANLFFK-AGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGf-G~VG~~~a~~L~~-~g~~vv~V~D~ 90 (262)
|++|+|. |.+|..+++.|.+ .++.+++++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~ 33 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAAS 33 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEec
Confidence 5889995 9999999999988 58999999663
No 352
>PRK08339 short chain dehydrogenase; Provisional
Probab=91.18 E-value=0.76 Score=40.63 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~-~~~ 39 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVI-LLS 39 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEe
Confidence 4688999999997 6799999999999999987 556
No 353
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.10 E-value=0.36 Score=46.66 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.+++|.|.|+|.-|.++|++|.+.|++|. ++|.
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~-~~D~ 45 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVT-AFDK 45 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEE-EECC
Confidence 457899999999999999999999999977 7884
No 354
>PRK06196 oxidoreductase; Provisional
Probab=91.06 E-value=0.54 Score=42.71 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=31.1
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
..++++++++|.|. |.+|+++++.|.+.|++|+.++
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 34678999999997 8899999999999999998543
No 355
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.06 E-value=1.6 Score=42.74 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=26.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D 89 (262)
++|+|+|.|.||..+|-.|.+. |.+|+++ |
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv-D 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV-D 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE-E
Confidence 5799999999999999999988 4788855 6
No 356
>PRK05717 oxidoreductase; Validated
Probab=90.97 E-value=0.87 Score=39.68 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~-~~~ 41 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVV-LAD 41 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEE-EEc
Confidence 4678999999996 8999999999999999988 555
No 357
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=90.83 E-value=3.9 Score=36.67 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+.+|+|.|.|.||+.++++++.+|++++.++.
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~ 187 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGR 187 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC
Confidence 3678999999999999999999999999875544
No 358
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.69 E-value=0.98 Score=38.84 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+ +.|
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi-~~~ 36 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLA-LID 36 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999997 9999999999999999987 455
No 359
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.61 E-value=0.45 Score=46.30 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.+++|.|.|+|..|++++++|.+.|++|+ ++|.
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~-~~D~ 46 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVV-VADD 46 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEE-EECC
Confidence 577899999999999999999999999766 7884
No 360
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.48 E-value=0.82 Score=41.71 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=27.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-.+|+|.|.|.+|+.+++.|.+.|..+. |.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~-i~g 33 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVR-IIG 33 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEE-EEe
Confidence 4689999999999999999999998874 444
No 361
>PRK07060 short chain dehydrogenase; Provisional
Probab=90.44 E-value=1.1 Score=38.44 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~-~~~ 40 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVV-AAA 40 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEE-EEe
Confidence 4578899999997 8999999999999999988 445
No 362
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=90.41 E-value=1.1 Score=42.01 Aligned_cols=129 Identities=16% Similarity=0.242 Sum_probs=69.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC--ceecCCCccccccC
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE--GEKINDSKEFWSIP 134 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~--~~~~~~~~~il~~~ 134 (262)
++|+|+|. |-||+.++++|.++ +.+++++++++.. .|-.+... ...+....+ .+..+ .+++.. +
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~s----agk~~~~~------~~~l~~~~~~~~~~~~-~~~~~~-~ 68 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRES----AGKPVSEV------HPHLRGLVDLNLEPID-EEEIAE-D 68 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchh----cCCChHHh------CccccccCCceeecCC-HHHhhc-C
Confidence 48999998 99999999999886 7888877664311 11111111 111111000 11111 233433 8
Q ss_pred ceEEeeCCccCcccccchhcc--CceEEEecCCCC-CC-HHHHH----------HHHHCCCeEecc----------cccc
Q psy14499 135 CDILIPAAIEDQITINNANNV--TAKIILEGANGP-TT-TEADD----------ILRDKGIILAPD----------VITN 190 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p-~t-~ea~~----------~l~~rgi~~iPD----------~~aN 190 (262)
+|+++-|.+.. .+.+.+..+ ..+.|++.++.. +. ++.-+ .|.+.=+..+|. +++|
T Consensus 69 ~DvVf~alP~~-~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~~~~iian 147 (346)
T TIGR01850 69 ADVVFLALPHG-VSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIKGARLIAN 147 (346)
T ss_pred CCEEEECCCch-HHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhCCCcEEEc
Confidence 99999988644 555555554 224455555443 33 22111 122233456676 4667
Q ss_pred chhhHHHHHH
Q psy14499 191 AGGVIVSYFE 200 (262)
Q Consensus 191 ~GGvi~s~~E 200 (262)
.|.-.++..-
T Consensus 148 PgC~~t~~~l 157 (346)
T TIGR01850 148 PGCYPTATLL 157 (346)
T ss_pred CCcHHHHHHH
Confidence 7766555443
No 363
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.34 E-value=1 Score=39.17 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~ 41 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNG 41 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEe
Confidence 578999999996 9999999999999999988 555
No 364
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.33 E-value=0.47 Score=46.38 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
++.+++|.|.|+|..|.++|++|.+.|++|. ++|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~ 39 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLR-VADTR 39 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EEcCC
Confidence 3567899999999999999999999999987 78853
No 365
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.21 E-value=0.38 Score=44.54 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=28.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCC-CEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAG-AKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g-~~vv~V~D~ 90 (262)
.+.++|+|+|.|+||+.++..|...| .. +.+.|.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di 37 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDV 37 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence 35679999999999999999998888 56 447773
No 366
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.04 E-value=1.1 Score=41.80 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=53.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCc-------eecCCCccc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG-------EKINDSKEF 130 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~-------~~~~~~~~i 130 (262)
.++|+|+|.|+.|..++..|.+.|. ++ +.. .|.+.+.+..+.+.....+++. ...++..+.
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g~-v~-l~~----------~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRGP-TL-QWV----------RSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEA 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-EE-EEe----------CCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHH
Confidence 3689999999999999999999984 44 222 2444444444432222222211 111112222
Q ss_pred cccCceEEeeCCccCccc---ccchhccCc-eEEEecCCCC
Q psy14499 131 WSIPCDILIPAAIEDQIT---INNANNVTA-KIILEGANGP 167 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it---~e~a~~~~~-kiIve~AN~p 167 (262)
+ .++|+++-|.++..+. .+..+.++. .+|+-.+|+-
T Consensus 75 ~-~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 75 A-NCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred H-hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 2 4889999988765432 122222332 3577777753
No 367
>PRK07236 hypothetical protein; Provisional
Probab=90.02 E-value=0.59 Score=43.74 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=34.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNP 97 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~ 97 (262)
+++..+|+|+|.|.+|..+|..|.+.|++|+ |.|..-...++
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~~~~~ 44 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGWDVD-VFERSPTELDG 44 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCCEE-EEecCCCCcCC
Confidence 4667899999999999999999999999988 88864333333
No 368
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=89.96 E-value=2.6 Score=39.51 Aligned_cols=108 Identities=12% Similarity=0.054 Sum_probs=66.8
Q ss_pred ecccCCCCccC-CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC---CHHHHHHHHHHHHC-CCEEEEEeCCCceee
Q psy14499 21 TGKPISIGGSF-GRQKATGRGVFIIGSKIASKINLNIINSKISIQGF---GNVGSVAANLFFKA-GAKIVAIQDDKTTIY 95 (262)
Q Consensus 21 tGkp~~~GG~~-~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf---G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~ 95 (262)
...|+-.+|+. +.-+-=+..=++.+++.+...|.+++|++|+++|= ++|...++..|..+ |..++ ++-
T Consensus 121 ~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~-~~~------ 193 (338)
T PRK08192 121 SRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFT-LVS------ 193 (338)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEE-EEC------
Confidence 56899888885 44444455555555554322355789999999998 58999999887754 88877 443
Q ss_pred CCCCCC-HHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCC
Q psy14499 96 NPNGFN-IPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAA 142 (262)
Q Consensus 96 ~~~GlD-~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa 142 (262)
|.|+. ++.+.+..++.|. ..+..+++++.+ .++||+..-.
T Consensus 194 -P~~~~~~~~~~~~~~~~g~-----~~~~~~d~~ea~-~~aDvvyt~~ 234 (338)
T PRK08192 194 -PKELAMPDYVISDIENAGH-----KITITDQLEGNL-DKADILYLTR 234 (338)
T ss_pred -CccccCCHHHHHHHHHcCC-----eEEEEcCHHHHH-ccCCEEEEcC
Confidence 44543 2344443333221 122233344555 4999999854
No 369
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.93 E-value=0.62 Score=44.74 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=31.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++.++++.|.|.|..|.++|++|.+.|++|+ ++|.
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~ 36 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDA 36 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 3578899999999999999999999999987 6774
No 370
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.89 E-value=0.85 Score=42.30 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=28.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|.|+|.|.+|..+++.|...|..-+.+.|.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~ 31 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDL 31 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcC
Confidence 5899999999999999999999887778884
No 371
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=89.84 E-value=0.42 Score=48.39 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=49.8
Q ss_pred CceEecccCCCCccCCCCChhHHHHHHHHHHH----HHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 17 PGIVTGKPISIGGSFGRQKATGRGVFIIGSKI----ASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 17 ~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~----~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|....+-+.++-+-++..-.-..|=.-++-+ +..++. .|+..+|+|+|.|.+|..+|+.|...|.+-+.++|.
T Consensus 292 ~GKl~pr~~dL~~~mdP~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 292 NGKLQPISVDLSKEFDPKRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred CCCcCceEechhhhcCHHHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 34444445555555555544444444443322 112233 478999999999999999999999999887879985
No 372
>PRK06125 short chain dehydrogenase; Provisional
Probab=89.84 E-value=1.2 Score=38.84 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~-~~~ 38 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLH-LVA 38 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEE-EEe
Confidence 4578899999997 7899999999999999988 444
No 373
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.83 E-value=2.3 Score=38.71 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=28.1
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
+.+|+|.|. |.||..+++++..+|+ +|++++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~ 188 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG 188 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC
Confidence 489999998 9999999999999999 7886654
No 374
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.77 E-value=1.1 Score=46.07 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=27.3
Q ss_pred CeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFF-KAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..+. ..|+.|+ +.|
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~-l~d 340 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVR-IKD 340 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEE-EEe
Confidence 67999999999999999988 7899988 777
No 375
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.74 E-value=4.7 Score=36.88 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+.+|+|+|.|.+|..++++++..|+++|.++|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~ 192 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAID 192 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 3688999999999999999999999998543555
No 376
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.67 E-value=1.3 Score=38.62 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +++
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~-~~~ 40 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVA-IAA 40 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEc
Confidence 578999999997 8899999999999999988 555
No 377
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=89.65 E-value=2.6 Score=40.85 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=66.4
Q ss_pred ecccCCCCccC-CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC---CHHHHHHHHHHHHC-CCEEEEEeCCCceee
Q psy14499 21 TGKPISIGGSF-GRQKATGRGVFIIGSKIASKINLNIINSKISIQGF---GNVGSVAANLFFKA-GAKIVAIQDDKTTIY 95 (262)
Q Consensus 21 tGkp~~~GG~~-~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf---G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~ 95 (262)
...|+-.+|.. ..-+-=+..=++.+++....+|.+++|++|+++|- ++|...++..+..+ |+.++ ++-
T Consensus 203 s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~-l~~------ 275 (429)
T PRK11891 203 TNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFT-LVS------ 275 (429)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEE-EEC------
Confidence 56899888863 44444444444454443211233589999999998 59999999998876 99987 444
Q ss_pred CCCCCCH-HHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCc
Q psy14499 96 NPNGFNI-PKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 143 (262)
Q Consensus 96 ~~~GlD~-~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~ 143 (262)
|.|+++ +.+.+..++.|. ..+..+++++.+ .++||+.....
T Consensus 276 -P~~~~~~~~~~~~~~~~G~-----~v~~~~d~~eav-~~ADVVYt~~~ 317 (429)
T PRK11891 276 -PPTLEMPAYIVEQISRNGH-----VIEQTDDLAAGL-RGADVVYATRI 317 (429)
T ss_pred -CCccccCHHHHHHHHhcCC-----eEEEEcCHHHHh-CCCCEEEEcCc
Confidence 455533 344444333221 112233345555 49999998553
No 378
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.51 E-value=0.58 Score=44.64 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+..+|.|+|+|..|.++|+.|.+.|++|+ ++|.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~ 34 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDK 34 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeC
Confidence 45789999999999999999999999877 6774
No 379
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=89.39 E-value=3.3 Score=38.12 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=65.6
Q ss_pred ecccCCCCccCC-CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC---HHHHHHHHHHHHCCCEEEEEeCCCceeeC
Q psy14499 21 TGKPISIGGSFG-RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQDDKTTIYN 96 (262)
Q Consensus 21 tGkp~~~GG~~~-~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG---~VG~~~a~~L~~~g~~vv~V~D~~G~i~~ 96 (262)
.+.|+-.+|... .-+-=+..=++.+++ +.| +++|++|+++|-+ +|.+.++..+..+|+.+. ++-
T Consensus 116 s~vPVINa~~g~~~HPtQ~LaDl~Ti~e---~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~-~~~------- 183 (301)
T TIGR00670 116 SEVPVINAGDGSNQHPTQTLLDLYTIYE---EFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVY-LIS------- 183 (301)
T ss_pred CCCCEEeCCCCCCCCcHHHHHHHHHHHH---HhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEE-EEC-------
Confidence 568988888743 333334433444443 345 6899999999985 999999999999999987 544
Q ss_pred CCCCC-HHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCc
Q psy14499 97 PNGFN-IPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 143 (262)
Q Consensus 97 ~~GlD-~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~ 143 (262)
|.|++ ++.+.+..++.|. ..+..+|+++.+ .++||+..-..
T Consensus 184 P~~~~~~~~~~~~~~~~G~-----~v~~~~d~~~a~-~~aDvvyt~~~ 225 (301)
T TIGR00670 184 PEELRMPKEILEELKAKGI-----KVRETESLEEVI-DEADVLYVTRI 225 (301)
T ss_pred CccccCCHHHHHHHHHcCC-----EEEEECCHHHHh-CCCCEEEECCc
Confidence 45552 3344443333220 112223344555 48999988543
No 380
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.34 E-value=0.62 Score=44.91 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+++++|.|+|+|..|..+|++|.+.|++|. ++|.
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~-~~D~ 40 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVI-AWDD 40 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EECC
Confidence 578899999999999999999999999876 7884
No 381
>PRK05872 short chain dehydrogenase; Provisional
Probab=89.31 E-value=1.3 Score=39.80 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~-~~~ 40 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLA-LVD 40 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999996 8899999999999999987 555
No 382
>KOG1207|consensus
Probab=89.16 E-value=1.3 Score=38.14 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=33.1
Q ss_pred CCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+|.|+.|.+.|.|. +|+.+++.|+..|++|++++.
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR 39 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVAR 39 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEec
Confidence 468999999999876 999999999999999999986
No 383
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=89.08 E-value=1.1 Score=36.10 Aligned_cols=97 Identities=22% Similarity=0.262 Sum_probs=53.6
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC-----CccccccCc
Q psy14499 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND-----SKEFWSIPC 135 (262)
Q Consensus 61 v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~-----~~~il~~~~ 135 (262)
|+|.|.|.+|..+|-.|++.|..|.-++. ...+....++.-.+....+...... .......++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSR------------SPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEES------------HHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEc------------cccHHhhhheeEEEEecccceecccccccCcchhccCCC
Confidence 68999999999999999999999885544 2223333333222322211111110 111234689
Q ss_pred eEEeeCCccCcccccchhcc-----CceEEEecCCCCCCH
Q psy14499 136 DILIPAAIEDQITINNANNV-----TAKIILEGANGPTTT 170 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~p~t~ 170 (262)
|+++-|.-.... .+..+.+ +...|+-.-|+--..
T Consensus 69 D~viv~vKa~~~-~~~l~~l~~~~~~~t~iv~~qNG~g~~ 107 (151)
T PF02558_consen 69 DLVIVAVKAYQL-EQALQSLKPYLDPNTTIVSLQNGMGNE 107 (151)
T ss_dssp SEEEE-SSGGGH-HHHHHHHCTGEETTEEEEEESSSSSHH
T ss_pred cEEEEEecccch-HHHHHHHhhccCCCcEEEEEeCCCCcH
Confidence 999999754333 2222222 223677777775443
No 384
>PRK05876 short chain dehydrogenase; Provisional
Probab=89.05 E-value=1.4 Score=39.26 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~ 37 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVV-LGD 37 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 468899999984 8899999999999999987 666
No 385
>PRK09291 short chain dehydrogenase; Provisional
Probab=89.04 E-value=2 Score=37.16 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=27.6
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++|.|. |.+|+.+++.|.+.|++|++++.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 468999996 89999999999999999986543
No 386
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=89.04 E-value=1.4 Score=37.81 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=30.1
Q ss_pred CCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++++|.| .|.+|+++++.|.+.|++|+.++.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 36788999999 599999999999999999885543
No 387
>PRK08818 prephenate dehydrogenase; Provisional
Probab=89.03 E-value=1.5 Score=41.54 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=27.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEeCC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~D~ 90 (262)
...||.|+|+ |-+|+.+++.|.+. +.+|+ ..|.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~ 37 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDP 37 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcC
Confidence 5689999999 99999999999874 78877 4554
No 388
>PRK06949 short chain dehydrogenase; Provisional
Probab=88.99 E-value=1.7 Score=37.69 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~ 39 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLA 39 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 578999999996 999999999999999998844
No 389
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=88.97 E-value=0.9 Score=41.92 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=32.7
Q ss_pred CCCCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 53 NLNIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 53 g~~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
|.++.+++|+|.| .|-+|+++++.|.+.|++|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5678999999999 499999999999999999996544
No 390
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.91 E-value=1.2 Score=41.62 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=60.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCcee------cCCCccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK------INDSKEFWS 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~------~~~~~~il~ 132 (262)
++|+|+|.|+=|.++|..|.+.|..|. +.. .|++.+.+..+.+.....+|+... .+|..+.+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~-lw~----------r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~- 69 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVR-LWG----------RDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEAL- 69 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeE-EEe----------cCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHH-
Confidence 589999999999999999999998877 544 577777777665444444553321 11122233
Q ss_pred cCceEEeeCCccCcccccchhcc-----CceEEEecCCC
Q psy14499 133 IPCDILIPAAIEDQITINNANNV-----TAKIILEGANG 166 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~ 166 (262)
.++|+++-+-+...+ .+.++++ +-..|+-.+.+
T Consensus 70 ~~ad~iv~avPs~~~-r~v~~~l~~~l~~~~~iv~~sKG 107 (329)
T COG0240 70 DGADIIVIAVPSQAL-REVLRQLKPLLLKDAIIVSATKG 107 (329)
T ss_pred hcCCEEEEECChHHH-HHHHHHHhhhccCCCeEEEEecc
Confidence 359999987765443 2333332 33456666665
No 391
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.85 E-value=4.6 Score=38.75 Aligned_cols=187 Identities=19% Similarity=0.230 Sum_probs=101.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-----C----C-Cce-ecC-C
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-----F----N-EGE-KIN-D 126 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-----~----~-~~~-~~~-~ 126 (262)
++|+|+|.|=||...+-.|.+.|+.|+ ..| +|..++..+....-.+-+ + . .++ ..+ |
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv-~vD----------id~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd 69 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVV-CVD----------IDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTD 69 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEE-EEe----------CCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcC
Confidence 589999999999999999999999998 557 566655444332111110 0 0 000 011 1
Q ss_pred CccccccCceEEeeCCccCcc-ccc--------chhc----c-CceEEEecCCCCC--CHHHHHHHHHCC------CeEe
Q psy14499 127 SKEFWSIPCDILIPAAIEDQI-TIN--------NANN----V-TAKIILEGANGPT--TTEADDILRDKG------IILA 184 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~i-t~e--------~a~~----~-~~kiIve~AN~p~--t~ea~~~l~~rg------i~~i 184 (262)
..+.+ .++||.+-|.++..- ++. .++. + +.++||.=.=.|+ +.+..+.+.+.. |..-
T Consensus 70 ~~~a~-~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~N 148 (414)
T COG1004 70 YEEAV-KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASN 148 (414)
T ss_pred HHHHH-hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecC
Confidence 11222 488998888765433 221 1222 2 3478887777776 566666666655 6666
Q ss_pred ccccccchhh------------------HHHHHHHHhhh--cCC-----CCCHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy14499 185 PDVITNAGGV------------------IVSYFEWVQNL--SNL-----LWTEQEI-----NLRLNNIICNAFDAIWELA 234 (262)
Q Consensus 185 PD~~aN~GGv------------------i~s~~E~~~~~--~~~-----~~~~~~v-----~~~l~~~~~~~~~~v~~~a 234 (262)
|.||--.-.| ..-..|+.+.. ++. .+...|. ..-|..++ .-++++-+.|
T Consensus 149 PEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKI-sFiNEia~ic 227 (414)
T COG1004 149 PEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKI-SFINEIANIC 227 (414)
T ss_pred hHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 7776432221 00111111110 110 1112221 12344443 3356777788
Q ss_pred hhcCCCHHHHHHHHHHH-HHHHHHH
Q psy14499 235 NTKKVSLRTAAFIIGCT-RVLQAHK 258 (262)
Q Consensus 235 ~~~~~~~r~aa~~~a~~-rv~~a~~ 258 (262)
++.|.+.++.+.-++++ ||...+.
T Consensus 228 e~~g~D~~~V~~gIGlD~RIG~~fl 252 (414)
T COG1004 228 EKVGADVKQVAEGIGLDPRIGNHFL 252 (414)
T ss_pred HHhCCCHHHHHHHcCCCchhhHhhC
Confidence 88888888888777653 5555443
No 392
>PRK08628 short chain dehydrogenase; Provisional
Probab=88.77 E-value=0.81 Score=39.82 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
+.++++++++|.|. |.+|+.+++.|.+.|++++.+
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~ 37 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIF 37 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEE
Confidence 46789999999995 889999999999999998744
No 393
>PRK07825 short chain dehydrogenase; Provisional
Probab=88.75 E-value=1.6 Score=38.44 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+ +++
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~-~~~ 36 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVA-IGD 36 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEE
Confidence 467889999997 8899999999999999987 555
No 394
>PRK07062 short chain dehydrogenase; Provisional
Probab=88.73 E-value=1.6 Score=38.26 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +++
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~-~~~ 39 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVA-ICG 39 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEe
Confidence 4688999999997 7799999999999999988 445
No 395
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=88.70 E-value=0.88 Score=39.29 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 578999999997 8899999999999999998553
No 396
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.63 E-value=0.62 Score=42.70 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
+...++|+|+|.|.+|..+|..|.+.|..|+-+.
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~ 35 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLL 35 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 3456799999999999999999999999888444
No 397
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.60 E-value=2.9 Score=38.85 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
.+.+|+|.|.|.+|..++++++.+|+ +|+ ++|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi-~~~ 223 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVV-AVD 223 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEE-EEc
Confidence 57899999999999999999999999 466 445
No 398
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.60 E-value=1.5 Score=37.95 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~ 37 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIA 37 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 467899999997 999999999999999998844
No 399
>KOG0029|consensus
Probab=88.57 E-value=0.65 Score=45.79 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC----Cceee
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD----KTTIY 95 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~----~G~i~ 95 (262)
..+.++|+|+|.|--|.++|+.|+++|++|+ |-+. .|-||
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~-VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVL-VLEARDRVGGRIY 55 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceE-EEeccCCcCceeE
Confidence 4577899999999999999999999999987 7643 45555
No 400
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=88.55 E-value=3 Score=38.59 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=33.2
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+...+....+.+|+|.|.|.+|..++++++..|++++.+++
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~ 212 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS 212 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeC
Confidence 33444444788999999999999999999999999886654
No 401
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=88.52 E-value=1.5 Score=37.61 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|+.|+ +.+
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~-~~~ 37 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVG-LHG 37 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEc
Confidence 567889999995 9999999999999999776 444
No 402
>PRK12742 oxidoreductase; Provisional
Probab=88.52 E-value=3 Score=35.57 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 467899999996 899999999999999998743
No 403
>KOG1196|consensus
Probab=88.47 E-value=2.8 Score=38.82 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=69.4
Q ss_pred CCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHH
Q psy14499 27 IGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL 105 (262)
Q Consensus 27 ~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l 105 (262)
.=|..|-++.|+|--+ . ++...-+|.+|.|.|. |.||+-+-++-+-.|++|||++-|+ ++.
T Consensus 130 ylg~lGm~glTAy~Gf---~----ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~-----------EKv 191 (343)
T KOG1196|consen 130 YLGLLGMPGLTAYAGF---Y----EICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSK-----------EKV 191 (343)
T ss_pred hhhccCCchhHHHHHH---H----HhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCCh-----------hhh
Confidence 3344455556665433 3 3334447899999996 9999999998888999999998752 222
Q ss_pred HHHHHhcCCcc--CCCCceecCCCcc----ccccCceEEeeCCccCcccccchhcc--CceEEEecCCC
Q psy14499 106 QKYVTFTRSIK--DFNEGEKINDSKE----FWSIPCDILIPAAIEDQITINNANNV--TAKIILEGANG 166 (262)
Q Consensus 106 ~~~~~~~g~~~--~~~~~~~~~~~~~----il~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~ 166 (262)
.-++.+.|--. +|... ++..+ ......||+++--.+++++.- ...+ +.+|++-|+=.
T Consensus 192 ~ll~~~~G~d~afNYK~e---~~~~~aL~r~~P~GIDiYfeNVGG~~lDav-l~nM~~~gri~~CG~IS 256 (343)
T KOG1196|consen 192 DLLKTKFGFDDAFNYKEE---SDLSAALKRCFPEGIDIYFENVGGKMLDAV-LLNMNLHGRIAVCGMIS 256 (343)
T ss_pred hhhHhccCCccceeccCc---cCHHHHHHHhCCCcceEEEeccCcHHHHHH-HHhhhhccceEeeeeeh
Confidence 22222222111 11110 01122 234678999998777766542 2222 67788777644
No 404
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=88.36 E-value=1 Score=41.30 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCce
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTT 93 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~ 93 (262)
-++|++-|+|+||.+..+.|..+ +..+|++.++++.
T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~a 38 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAA 38 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcCCCCceEEEEecCcc
Confidence 36899999999999888888776 9999999886543
No 405
>PRK09072 short chain dehydrogenase; Provisional
Probab=88.36 E-value=1.7 Score=37.95 Aligned_cols=33 Identities=21% Similarity=0.544 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~ 35 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLV 35 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 467889999995 899999999999999998844
No 406
>PRK08265 short chain dehydrogenase; Provisional
Probab=88.34 E-value=1.7 Score=38.20 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~-~~~ 37 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVA-IVD 37 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999996 8899999999999999988 555
No 407
>PRK07063 short chain dehydrogenase; Provisional
Probab=88.33 E-value=1.7 Score=37.94 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv-~~~ 38 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVA-LAD 38 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999996 7899999999999999988 555
No 408
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.33 E-value=3.1 Score=37.01 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=31.5
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE-EEEEeC
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK-IVAIQD 89 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~-vv~V~D 89 (262)
+++..+. ..+.+|+|.|.|.+|..++++++.+|++ |+ ++|
T Consensus 112 al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi-~~~ 152 (280)
T TIGR03366 112 ALEAAGD-LKGRRVLVVGAGMLGLTAAAAAAAAGAARVV-AAD 152 (280)
T ss_pred HHHhccC-CCCCEEEEECCCHHHHHHHHHHHHcCCCEEE-EEC
Confidence 3444433 3788999999999999999999999997 66 446
No 409
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=88.26 E-value=0.67 Score=41.47 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAG 81 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g 81 (262)
+..+|+|+|.|.+|..+++.|.+.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 6789999999999999999999875
No 410
>PRK06057 short chain dehydrogenase; Provisional
Probab=88.26 E-value=1.7 Score=37.87 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++|+|.|. |.+|.++++.|.+.|++|+ +.|
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~-~~~ 38 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVV-VGD 38 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEE-EEe
Confidence 478999999998 9999999999999999988 444
No 411
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.23 E-value=1.6 Score=40.32 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=25.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
..+|+|+|.|+||+.+|-.|...+. .++ +.|
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~-LiD 35 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELV-LVD 35 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEe
Confidence 4599999999999999999887764 344 667
No 412
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=88.23 E-value=1.8 Score=37.83 Aligned_cols=34 Identities=18% Similarity=0.409 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~-~~~ 36 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVA-VLD 36 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999996 7899999999999999988 545
No 413
>PRK06194 hypothetical protein; Provisional
Probab=88.17 E-value=1.7 Score=38.55 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~-~~~ 37 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLV-LAD 37 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEE-EEe
Confidence 457789999996 8899999999999999988 555
No 414
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=88.11 E-value=0.84 Score=42.74 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
..+|+|+|.|.+|..+|-.|.+.|.+|+ |.|..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~-l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVA-VIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEE-EEcCC
Confidence 3589999999999999999999999988 88853
No 415
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.08 E-value=1.9 Score=40.08 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-.+.+|+|.|.|.||..++++++.+|++++.+.+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3688999999999999999999999999885544
No 416
>PRK08013 oxidoreductase; Provisional
Probab=88.07 E-value=0.79 Score=43.21 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
+...|+|+|.|.+|..+|-.|.+.|.+|+ |.|..
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~-viE~~ 35 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVA-VLEQR 35 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEE-EEeCC
Confidence 34689999999999999999999999987 88853
No 417
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=88.03 E-value=5.7 Score=36.13 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=31.5
Q ss_pred HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 50 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 50 ~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+..+. ..+.+++|.|.|.+|+.+++++..+|++++.+.+
T Consensus 163 ~~~~~-~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~ 201 (337)
T cd05283 163 KRNGV-GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSR 201 (337)
T ss_pred HhcCC-CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcC
Confidence 33443 3678999999999999999999999999885544
No 418
>PRK05866 short chain dehydrogenase; Provisional
Probab=87.97 E-value=1.9 Score=38.91 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=30.7
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+.++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi-~~~ 71 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVV-AVA 71 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE
Confidence 34568899999996 8999999999999999988 444
No 419
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=87.94 E-value=1.9 Score=37.39 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vv-l~~ 40 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEII-IND 40 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEE-EEc
Confidence 568899999995 8899999999999999988 555
No 420
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=87.92 E-value=2.4 Score=33.55 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=51.6
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHh-CCCCCCCeEEEEc--------CCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 29 GSFGRQKATGRGVFIIGSKIASKI-NLNIINSKISIQG--------FGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 29 G~~~~~~aTg~Gv~~~~~~~~~~~-g~~l~~~~v~IqG--------fG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
|--++...|.|....+.+.+.+.. ...++...|-|-| .|.-...+.+.|.+.|.+|+.|.|..
T Consensus 36 g~kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvT 107 (114)
T TIGR03628 36 VKADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVT 107 (114)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcC
Confidence 334678889999888888887654 3467889999999 67888889999999999999999853
No 421
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.90 E-value=0.59 Score=42.63 Aligned_cols=31 Identities=42% Similarity=0.507 Sum_probs=26.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~ 90 (262)
++|+|+|.|.||..+|..+...|. .++ +.|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~-L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVV-LFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEE-EEEC
Confidence 589999999999999999988774 555 7784
No 422
>PRK10637 cysG siroheme synthase; Provisional
Probab=87.88 E-value=1.3 Score=43.05 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=51.0
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++++++|+|+|.|+|+..=++.|.+.|++|+-|+- + ++. ++.++.+ .+.+.-. .. .+. .+++ .
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp--------~-~~~-~~~~l~~-~~~i~~~-~~-~~~-~~dl--~ 71 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL--------A-FIP-QFTAWAD-AGMLTLV-EG-PFD-ESLL--D 71 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC--------C-CCH-HHHHHHh-CCCEEEE-eC-CCC-hHHh--C
Confidence 478999999999999999999999999999885542 1 443 3444332 2333211 01 111 1222 3
Q ss_pred CceEEeeCCccCcccccc
Q psy14499 134 PCDILIPAAIEDQITINN 151 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~ 151 (262)
++|+++-|+....+|.+.
T Consensus 72 ~~~lv~~at~d~~~n~~i 89 (457)
T PRK10637 72 TCWLAIAATDDDAVNQRV 89 (457)
T ss_pred CCEEEEECCCCHHHhHHH
Confidence 678777777655555543
No 423
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=87.85 E-value=0.92 Score=40.16 Aligned_cols=86 Identities=16% Similarity=0.231 Sum_probs=51.9
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhcc--Cce
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV--TAK 158 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~--~~k 158 (262)
++++++|+| .+.++..++.++.+ ...+++.++++..++|+++.|++....-+--..-+ +..
T Consensus 1 ~~eLvaV~D----------~~~e~a~~~a~~~g-------~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkh 63 (229)
T TIGR03855 1 NFEIAAVYD----------RNPKDAKELAERCG-------AKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKD 63 (229)
T ss_pred CeEEEEEEC----------CCHHHHHHHHHHhC-------CceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCC
Confidence 467899999 67888777766543 22344356777678999999998665433333333 344
Q ss_pred EEEecCCCCCCHHH----HHHHHHCCCeE
Q psy14499 159 IILEGANGPTTTEA----DDILRDKGIIL 183 (262)
Q Consensus 159 iIve~AN~p~t~ea----~~~l~~rgi~~ 183 (262)
++++..-...+.+. .+..+++|..+
T Consensus 64 Vl~~s~gAlad~e~~~~l~~aA~~~g~~l 92 (229)
T TIGR03855 64 LLIMSVGALADRELRERLREVARSSGRKV 92 (229)
T ss_pred EEEECCcccCCHHHHHHHHHHHHhcCCEE
Confidence 77754433324332 33446677555
No 424
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.81 E-value=0.83 Score=44.14 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHH-HHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSV-AANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~-~a~~L~~~g~~vv~V~D~ 90 (262)
.++++|.|+|.|..|.+ +|++|.+.|++|. ++|.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~-~~D~ 39 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVS-GSDL 39 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEE-EECC
Confidence 36789999999999999 7999999999987 8885
No 425
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=87.80 E-value=1 Score=39.79 Aligned_cols=83 Identities=12% Similarity=0.166 Sum_probs=51.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++++++|+|+|.|.|+..=++.|.+.|++|+-|+-. ++. ++.++.+ .+.+.-. .+.++ ++++ .+
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~---------i~~-el~~l~~-~~~i~~~--~r~~~-~~dl--~g 85 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK---------FSK-EFLDLKK-YGNLKLI--KGNYD-KEFI--KD 85 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC---------CCH-HHHHHHh-CCCEEEE--eCCCC-hHHh--CC
Confidence 567999999999999999999999999999855531 333 3444332 2222111 01122 2222 46
Q ss_pred ceEEeeCCccCcccccchh
Q psy14499 135 CDILIPAAIEDQITINNAN 153 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~ 153 (262)
++++|-|+.-..+|...+.
T Consensus 86 ~~LViaATdD~~vN~~I~~ 104 (223)
T PRK05562 86 KHLIVIATDDEKLNNKIRK 104 (223)
T ss_pred CcEEEECCCCHHHHHHHHH
Confidence 7888888765555554333
No 426
>PRK07774 short chain dehydrogenase; Provisional
Probab=87.79 E-value=2 Score=37.07 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi-~~~ 37 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVV-VAD 37 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999996 9999999999999999998 444
No 427
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=87.74 E-value=3.8 Score=34.24 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=32.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeE-EEEcCCH---HHHHHHHHHHHCCCEEEE
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKI-SIQGFGN---VGSVAANLFFKAGAKIVA 86 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v-~IqGfG~---VG~~~a~~L~~~g~~vv~ 86 (262)
+..|++++..++..+. ..+..+| ++.|-|| -|..+|++|.+.|++|.-
T Consensus 6 E~Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 6 ENAGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 3467777766555442 3344555 5689977 678899999999999773
No 428
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.72 E-value=1.7 Score=38.04 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=28.8
Q ss_pred CCCCeEEEEcC-C-HHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGF-G-NVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGf-G-~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++++|.|. | .+|+.+++.|.+.|++|+ +.|
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~ 49 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISD 49 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEe
Confidence 56899999997 6 699999999999999977 555
No 429
>PRK06138 short chain dehydrogenase; Provisional
Probab=87.71 E-value=1.1 Score=38.61 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 468899999997 8999999999999999988554
No 430
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=87.68 E-value=2.2 Score=37.07 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=30.6
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~-~~~ 42 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVL-VNG 42 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEE-EEe
Confidence 3678999999996 8899999999999999988 445
No 431
>KOG1198|consensus
Probab=87.59 E-value=2.9 Score=39.32 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=46.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCC-CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC--CccCCCCceecCCCcccc-
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR--SIKDFNEGEKINDSKEFW- 131 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g-~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g--~~~~~~~~~~~~~~~~il- 131 (262)
+|++|+|.|- |.||+.++++....+ .++++++-. +.+ ++.++.| .+-+|.+...++ .+.
T Consensus 157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~-------e~~------~l~k~lGAd~vvdy~~~~~~e---~~kk 220 (347)
T KOG1198|consen 157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSK-------EKL------ELVKKLGADEVVDYKDENVVE---LIKK 220 (347)
T ss_pred CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEccc-------chH------HHHHHcCCcEeecCCCHHHHH---HHHh
Confidence 7778888775 799999999999999 666656541 112 2222222 223343321111 121
Q ss_pred --ccCceEEeeCCccCcccc
Q psy14499 132 --SIPCDILIPAAIEDQITI 149 (262)
Q Consensus 132 --~~~~DIlipaa~~~~it~ 149 (262)
..++|++++|......+.
T Consensus 221 ~~~~~~DvVlD~vg~~~~~~ 240 (347)
T KOG1198|consen 221 YTGKGVDVVLDCVGGSTLTK 240 (347)
T ss_pred hcCCCccEEEECCCCCcccc
Confidence 347999999998755544
No 432
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.56 E-value=2.3 Score=39.11 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=26.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CC-CEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK-AG-AKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~-~g-~~vv~V~D 89 (262)
.+.+|+|.|.|.||..++.++.. .| .+|+ ++|
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi-~~~ 196 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLV-VFG 196 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEE-EEe
Confidence 58899999999999999998876 55 5666 555
No 433
>PLN02206 UDP-glucuronate decarboxylase
Probab=87.55 E-value=1 Score=43.49 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=31.3
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
|...+++||+|.|. |-||+++++.|.+.|.+|+++.
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 55557899999995 9999999999999999999653
No 434
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=87.50 E-value=2.1 Score=37.48 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. +.+|+++++.|.+.|++|+.+.+
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 4688999999997 78999999999999999875444
No 435
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=87.47 E-value=0.93 Score=42.23 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
++..+|+|+|.|.+|..+|..|.+.|.+|+ |.|+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~-liE~~ 39 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVA-LVAPE 39 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEE-EEeCC
Confidence 345689999999999999999999999987 88764
No 436
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.46 E-value=1.9 Score=40.89 Aligned_cols=33 Identities=36% Similarity=0.389 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+.+|+|.|.|.+|..+++++..+|++++.++|
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d 217 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGD 217 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeC
Confidence 688999999999999999999999998775666
No 437
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.43 E-value=1.3 Score=38.13 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467889999996 8999999999999999987443
No 438
>PRK06172 short chain dehydrogenase; Provisional
Probab=87.37 E-value=2.3 Score=36.85 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~ 37 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVA 37 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 578899999996 889999999999999998844
No 439
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.36 E-value=1.1 Score=41.05 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.1
Q ss_pred CCCCCCCeEEEEcCC---HHHHHHHHHHHHCCCEEEEEeC
Q psy14499 53 NLNIINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 53 g~~l~~~~v~IqGfG---~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+++++.++|.|.| .+|+++|+.|.+.|++|+ +.|
T Consensus 3 ~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~ 41 (299)
T PRK06300 3 KIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGT 41 (299)
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEe
Confidence 357899999999997 799999999999999998 665
No 440
>PRK12829 short chain dehydrogenase; Provisional
Probab=87.35 E-value=2 Score=37.32 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
.+++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~ 41 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVC 41 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 368899999996 999999999999999998744
No 441
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=87.33 E-value=7.8 Score=34.83 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+.+|+|.|.|.+|+.+++++..+|++++.+++
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~ 199 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTR 199 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcC
Confidence 4678999999999999999999999999986655
No 442
>PRK06184 hypothetical protein; Provisional
Probab=87.25 E-value=1.5 Score=42.78 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 92 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G 92 (262)
....|+|+|.|.+|..+|-.|.+.|.+|+ |.|..-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~-viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFR-LIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEE-EEeCCC
Confidence 35689999999999999999999999988 888643
No 443
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=87.24 E-value=1 Score=40.55 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=27.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 92 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G 92 (262)
..|+|+|.|..|..+|..|.+.|++|+ |.|.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~-i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVT-IIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEE-EEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccc-cchhcc
Confidence 479999999999999999999999987 888643
No 444
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=87.23 E-value=6.7 Score=36.28 Aligned_cols=68 Identities=9% Similarity=0.036 Sum_probs=48.2
Q ss_pred ecccCCCCccCCCCChhHHHHHHHHHHHHHHhCC-CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCc
Q psy14499 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINL-NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKT 92 (262)
Q Consensus 21 tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~-~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G 92 (262)
...|+-.+|....-+-=+..=++.++ ++.|. +++|++|+++|- ++|...++..+..+|+.+. ++-..+
T Consensus 118 ~~vPVINag~~~~HPtQaL~Dl~Ti~---e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~-~~~P~~ 187 (311)
T PRK14804 118 SQVPVINGCDNMFHPCQSLADIMTIA---LDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLT-LVTPIA 187 (311)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHH---HHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EECCCC
Confidence 45788888866544443433344444 34565 689999999997 7899999999999999987 555433
No 445
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=87.22 E-value=1.5 Score=37.31 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~ 37 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYA 37 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 467889999996 89999999999999999875554
No 446
>PLN02602 lactate dehydrogenase
Probab=87.22 E-value=1.8 Score=40.68 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=25.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~ 90 (262)
++|+|+|.|+||+.+|-.|...+. .++ +.|.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~-LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELA-LVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEeC
Confidence 699999999999999999887764 344 7673
No 447
>PRK07890 short chain dehydrogenase; Provisional
Probab=87.21 E-value=1.9 Score=37.31 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.1
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~-~~~ 36 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVV-LAA 36 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EEe
Confidence 57889999996 8899999999999999988 555
No 448
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=87.12 E-value=0.86 Score=37.85 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=45.8
Q ss_pred CCCeEEEEcC--CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCC--CHH-HHH----HHHHhcCCccCCCCceecCCC
Q psy14499 57 INSKISIQGF--GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGF--NIP-KLQ----KYVTFTRSIKDFNEGEKINDS 127 (262)
Q Consensus 57 ~~~~v~IqGf--G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~Gl--D~~-~l~----~~~~~~g~~~~~~~~~~~~~~ 127 (262)
+|++|+++|= ++|..+++..+..+|..+. ++- |.|+ +++ .++ +...+++. ..+..++.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~-~~~-------P~~~~~~~~~~~~~~~~~~~~~~g~-----~i~~~~~~ 67 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVV-LIA-------PEGLRYPPDPEVLEKAKKNAKKNGG-----KITITDDI 67 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEE-EES-------SGGGGGSHHHHHHHHHHHHHHHHTT-----EEEEESSH
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEE-EEC-------CCcccCCCCHHHHHHHHHHHHHhCC-----CeEEEeCH
Confidence 5899999993 8999999999999999965 544 4552 332 233 22222221 11122223
Q ss_pred ccccccCceEEeeCCcc
Q psy14499 128 KEFWSIPCDILIPAAIE 144 (262)
Q Consensus 128 ~~il~~~~DIlipaa~~ 144 (262)
++.+ .++||++.-...
T Consensus 68 ~e~l-~~aDvvy~~~~~ 83 (158)
T PF00185_consen 68 EEAL-KGADVVYTDRWQ 83 (158)
T ss_dssp HHHH-TT-SEEEEESSS
T ss_pred HHhc-CCCCEEEEcCcc
Confidence 4455 489999987766
No 449
>KOG0024|consensus
Probab=87.00 E-value=4 Score=38.19 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccCCCCceecCCCcc------
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDFNEGEKINDSKE------ 129 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~~~~~~~~~~~~~------ 129 (262)
.|.+|+|.|.|++|......++.+|++=|.++| ++..+|...++ .|. .-....... + +++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d----------~~~~Rle~Ak~-~Ga~~~~~~~~~~-~-~~~~~~~v~ 235 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITD----------LVANRLELAKK-FGATVTDPSSHKS-S-PQELAELVE 235 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEee----------cCHHHHHHHHH-hCCeEEeeccccc-c-HHHHHHHHH
Confidence 789999999999999999888999986665999 78888766655 431 111000000 0 111
Q ss_pred -ccc-cCceEEeeCCccC
Q psy14499 130 -FWS-IPCDILIPAAIED 145 (262)
Q Consensus 130 -il~-~~~DIlipaa~~~ 145 (262)
.+. ...|+-++|+...
T Consensus 236 ~~~g~~~~d~~~dCsG~~ 253 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSGAE 253 (354)
T ss_pred hhccccCCCeEEEccCch
Confidence 222 4489999999754
No 450
>PRK08263 short chain dehydrogenase; Provisional
Probab=86.99 E-value=1.9 Score=38.10 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=27.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~-~~~ 34 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVV-ATA 34 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEE
Confidence 4678999985 8999999999999999987 444
No 451
>PRK07576 short chain dehydrogenase; Provisional
Probab=86.99 E-value=2.3 Score=37.42 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~ 39 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVA 39 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 578899999997 899999999999999998844
No 452
>PRK08862 short chain dehydrogenase; Provisional
Probab=86.95 E-value=2.2 Score=37.02 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|.+ .+|+++++.|.+.|++|+ +.+
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~-~~~ 36 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLI-LCD 36 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEE-EEc
Confidence 5788999999974 599999999999999987 444
No 453
>PRK09186 flagellin modification protein A; Provisional
Probab=86.95 E-value=2.2 Score=36.93 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=28.6
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
+++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 46899999997 889999999999999998854
No 454
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.93 E-value=1.5 Score=37.56 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
+++++++.|.|. |.+|+.+++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~ 36 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINS 36 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 467899999997 7899999999999999998543
No 455
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=86.93 E-value=0.99 Score=44.85 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..+++|+|+|.|.+|..+|..|.++|++|+ |.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~-v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVT-IFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 368999999999999999999999999977 7774
No 456
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=86.85 E-value=1.1 Score=45.50 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..+++|+|+|.|..|..+|..|.+.|++|+ |.|.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~-V~E~ 358 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVT-VYDR 358 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 368999999999999999999999999977 7775
No 457
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=86.80 E-value=2.4 Score=36.85 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~-~~~ 37 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVV-IAD 37 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEE-EEc
Confidence 367889999995 8999999999999999988 445
No 458
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.74 E-value=2.1 Score=39.53 Aligned_cols=29 Identities=38% Similarity=0.587 Sum_probs=24.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
+|+|+|.|+||+.+|..|...+. .++ +.|
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elv-L~D 31 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIV-LID 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEE-EEe
Confidence 58999999999999999887764 344 777
No 459
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=86.70 E-value=1.7 Score=40.85 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=45.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC--------CEEEEEeCCCceeeCCCCCCHHHHHHHHH-hcCCccCCCCce------ec
Q psy14499 60 KISIQGFGNVGSVAANLFFKAG--------AKIVAIQDDKTTIYNPNGFNIPKLQKYVT-FTRSIKDFNEGE------KI 124 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g--------~~vv~V~D~~G~i~~~~GlD~~~l~~~~~-~~g~~~~~~~~~------~~ 124 (262)
+|+|+|.|+.|.++|..|.+.| .+|. +... ++ -++-+.+.+... .+.....+|+.+ ..
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~-lw~~-----~~-~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at 73 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVR-MWVF-----EE-EIEGRNLTEIINTTHENVKYLPGIKLPANLVAV 73 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEE-EEEe-----cc-ccCCHHHHHHHHhcCCCccccCCCcCCCCeEEE
Confidence 5899999999999999999888 6655 4321 11 111223333332 233333333321 11
Q ss_pred CCCccccccCceEEeeCCccCcc
Q psy14499 125 NDSKEFWSIPCDILIPAAIEDQI 147 (262)
Q Consensus 125 ~~~~~il~~~~DIlipaa~~~~i 147 (262)
+|.++++ .++|+++-|.+...+
T Consensus 74 ~dl~eal-~~ADiIIlAVPs~~i 95 (342)
T TIGR03376 74 PDLVEAA-KGADILVFVIPHQFL 95 (342)
T ss_pred CCHHHHH-hcCCEEEEECChHHH
Confidence 2122333 489999998776554
No 460
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=86.63 E-value=2.2 Score=36.84 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++++|.|. |.+|.++++.|.+.|++|+ +.|
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi-~~~ 43 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVI-LLG 43 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEE-EEe
Confidence 368899999985 8899999999999999998 445
No 461
>PRK07035 short chain dehydrogenase; Provisional
Probab=86.63 E-value=2.5 Score=36.53 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|.++++.|.+.|++|+.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVS 38 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 578899999995 889999999999999999844
No 462
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=86.62 E-value=3.3 Score=38.06 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=26.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~ 90 (262)
++|+|+|.|.||..+|..|...|. .|+ +.|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vv-lvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLV-LLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEE-EEeC
Confidence 589999999999999999999775 655 7785
No 463
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.61 E-value=3.9 Score=39.25 Aligned_cols=90 Identities=16% Similarity=0.290 Sum_probs=59.9
Q ss_pred CCCCeEEEEcC----------CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC
Q psy14499 56 IINSKISIQGF----------GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN 125 (262)
Q Consensus 56 l~~~~v~IqGf----------G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~ 125 (262)
++|++|+|-|. -.-...+++.|.+.|++|+ + |||. ...+.+. .||+.+..+
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~-a-------YDP~-----a~~~~~~------~~~~~~~~~ 368 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVI-A-------YDPV-----AMENAFR------NFPDVELES 368 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEE-E-------ECch-----hhHHHHh------cCCCceEeC
Confidence 89999999996 3468888999999999998 4 4443 3222222 223334444
Q ss_pred CCccccccCceEEeeCCccCccc---ccchhccCceEEEecCCC
Q psy14499 126 DSKEFWSIPCDILIPAAIEDQIT---INNANNVTAKIILEGANG 166 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~~~~it---~e~a~~~~~kiIve~AN~ 166 (262)
+.++.+ ..+|+++-++.-+.+- -+.. .++.++|++|-|.
T Consensus 369 ~~~~~~-~~aDaivi~tew~ef~~~d~~~~-~m~~~~v~DgRni 410 (414)
T COG1004 369 DAEEAL-KGADAIVINTEWDEFRDLDFEKL-LMKTPVVIDGRNI 410 (414)
T ss_pred CHHHHH-hhCCEEEEeccHHHHhccChhhh-hccCCEEEecccc
Confidence 344444 5899999998743332 2223 5688899998875
No 464
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=86.60 E-value=2.9 Score=37.74 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=24.0
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
+||.|.|. |-+|+++++.|.+.| .|+++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~ 29 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIAL 29 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEe
Confidence 47999996 999999999999999 67644
No 465
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.57 E-value=1.3 Score=39.34 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCC---HHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG---~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++++|.|.+ .+|+++|+.|.+.|++|+ +.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~ 39 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTY 39 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEe
Confidence 688999999986 699999999999999987 555
No 466
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=86.51 E-value=2.5 Score=36.39 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=28.4
Q ss_pred CCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEE
Q psy14499 56 IINSKISIQG-FGNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 56 l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V 87 (262)
+++++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 5678999999 5999999999999999998844
No 467
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=86.46 E-value=1.4 Score=36.77 Aligned_cols=32 Identities=38% Similarity=0.530 Sum_probs=29.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
+++|.|.|..|+.+++.|.+.|++++++.|.+
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~ 32 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDN 32 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 47899999999999999999999999999864
No 468
>PRK12828 short chain dehydrogenase; Provisional
Probab=86.45 E-value=1.4 Score=37.43 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
.+++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~ 37 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALI 37 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEE
Confidence 467899999986 999999999999999998744
No 469
>PRK07478 short chain dehydrogenase; Provisional
Probab=86.43 E-value=2.6 Score=36.54 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~ 36 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVG 36 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 467889999996 789999999999999998844
No 470
>PLN02240 UDP-glucose 4-epimerase
Probab=86.41 E-value=1.5 Score=40.15 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++++++|+|.|. |.+|+++++.|.+.|++|+++.
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 578899999986 9999999999999999998654
No 471
>PRK06841 short chain dehydrogenase; Provisional
Probab=86.39 E-value=1.5 Score=37.92 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~ 45 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALL 45 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 578999999995 999999999999999998844
No 472
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=86.37 E-value=0.73 Score=34.79 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCHHHHHHHHH-HHHCCCEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANL-FFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~-L~~~g~~vv~V~D 89 (262)
+..+++|+|.|+.|+.++.. +...|.+++++.|
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~d 35 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFD 35 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEE
Confidence 45799999999999998743 3457899999998
No 473
>PRK06199 ornithine cyclodeaminase; Validated
Probab=86.30 E-value=5.3 Score=38.02 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=58.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
...|++=...+---+++++..+ .-++++|+|.|..++.-++.+.+. ..+-|-|.| -++++..++.++
T Consensus 132 ~~lTa~RTaA~salaa~~LAr~-da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~----------r~~~~a~~f~~~ 200 (379)
T PRK06199 132 NLLSAYRTGAVPGVGARHLARK-DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKG----------RGQKSLDSFATW 200 (379)
T ss_pred cchhhhHHHHHHHHHHHHhccC-CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEEC----------CCHHHHHHHHHH
Confidence 3344443333333344555432 567999999999999999998873 366665766 466666555443
Q ss_pred cCC-ccCCCCceecCCCccccccCceEEeeCCcc
Q psy14499 112 TRS-IKDFNEGEKINDSKEFWSIPCDILIPAAIE 144 (262)
Q Consensus 112 ~g~-~~~~~~~~~~~~~~~il~~~~DIlipaa~~ 144 (262)
-.. +.+.......++.++.. .++||++-|+..
T Consensus 201 ~~~~~~~~~~v~~~~s~~eav-~~ADIVvtaT~s 233 (379)
T PRK06199 201 VAETYPQITNVEVVDSIEEVV-RGSDIVTYCNSG 233 (379)
T ss_pred HHHhcCCCceEEEeCCHHHHH-cCCCEEEEccCC
Confidence 221 11111123334344555 589999998864
No 474
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=86.28 E-value=7.9 Score=37.62 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=28.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++|.|.|-|-.+..+++.+.+.|+++++++
T Consensus 6 ~~vLi~~~geia~~ii~aa~~lG~~~v~~~ 35 (467)
T PRK12833 6 RKVLVANRGEIAVRIIRAARELGMRTVAAC 35 (467)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEE
Confidence 589999999999999999999999999775
No 475
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.24 E-value=1 Score=43.78 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+++|+|.|+|.-|.+++++|.+ |++|+ |+|.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~-v~D~ 36 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVI-VYDD 36 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEE-EECC
Confidence 57899999999999999999995 99987 8883
No 476
>KOG0023|consensus
Probab=86.22 E-value=7.1 Score=36.56 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=37.5
Q ss_pred HHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 47 KIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 47 ~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..|++.|.. .|+++.|.|.|.+|.-..++-..+|++|++|+.+
T Consensus 172 spLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~ 214 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTS 214 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCC
Confidence 457777877 8999999999999999999999999999977754
No 477
>PRK12939 short chain dehydrogenase; Provisional
Probab=86.21 E-value=2.8 Score=35.96 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++++.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 467899999995 999999999999999998855
No 478
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=86.21 E-value=1.6 Score=35.89 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=27.3
Q ss_pred EEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 61 ISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 61 v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+|.|. |.+|+.+++.|.+.|++|++++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 678996 999999999999999999998873
No 479
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=86.20 E-value=1.7 Score=37.50 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++++|.|. |.+|+.+++.|.+.|++++.+.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~ 35 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCG 35 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcC
Confidence 46789999996 89999999999999999885544
No 480
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=86.17 E-value=1.1 Score=42.10 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=28.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
..|+|+|.|.+|..+|-.|.+.|++|+ |.|..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~-viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVL-LLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEE-EEcCC
Confidence 579999999999999999999999987 88863
No 481
>CHL00041 rps11 ribosomal protein S11
Probab=86.16 E-value=3.2 Score=32.91 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=47.6
Q ss_pred CCCChhHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCce
Q psy14499 32 GRQKATGRGVFIIGSKIASKI-NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTT 93 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~-g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~ 93 (262)
+....|-|....+.+.+++.. ...++...|.|-|+|.=-..+.+.|.+.|.+|+.|.|....
T Consensus 49 g~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~Tpi 111 (116)
T CHL00041 49 GARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPM 111 (116)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCC
Confidence 345677777776666666543 34578899999999987778889999999999999996443
No 482
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=86.13 E-value=1.2 Score=43.37 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
...++|+|+|.|..|..+|+.|.+.|.+++ |.+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~-vfE~ 41 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVV-VFER 41 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEE-EEec
Confidence 456899999999999999999999999988 7764
No 483
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=86.09 E-value=1.2 Score=41.98 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
...|+|+|.|.+|..+|-.|.+.|.+|+ |.|..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~-l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVT-LLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEE-EEccC
Confidence 4679999999999999999999999988 88875
No 484
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=86.04 E-value=1.9 Score=40.26 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=27.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCC-CEEEEEeCC
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAG-AKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g-~~vv~V~D~ 90 (262)
++|+|.|. |-+|+.++++|.+.. ..+++++++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~ 34 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVAS 34 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEC
Confidence 47999995 999999999998865 799988775
No 485
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=86.03 E-value=1.6 Score=38.15 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++.++|+|.|. |.+|+.+++.|.+.|++|++++.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 356789999995 99999999999999999987764
No 486
>PRK06753 hypothetical protein; Provisional
Probab=85.95 E-value=1.2 Score=41.22 Aligned_cols=31 Identities=32% Similarity=0.424 Sum_probs=28.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++|+|+|.|.+|..+|..|.+.|++++ |.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~-v~E~ 31 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVK-VFEK 31 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEE-EEec
Confidence 479999999999999999999999987 7764
No 487
>PRK07814 short chain dehydrogenase; Provisional
Probab=85.94 E-value=2.8 Score=36.75 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi-~~~ 41 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVL-IAA 41 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 478899999997 6799999999999999988 445
No 488
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=85.92 E-value=1.3 Score=47.22 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..+++|+|+|.|..|..+|..|.+.|++|+ |.|.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt-v~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVT-AIDG 414 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEE-EEcc
Confidence 479999999999999999999999999998 7775
No 489
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=85.90 E-value=1.2 Score=41.90 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=29.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
..+|+|+|.|.+|..+|-.|.+.|.+|+ |.|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~-viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIA-VIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEE-EEcCC
Confidence 4689999999999999999999999987 88864
No 490
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=85.90 E-value=3.7 Score=33.38 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=51.7
Q ss_pred cCCCCChhHHHHHHHHHHHHHHh-CCCCCCCeEEEEc--------CCHHHHHHHHHHHHCCCEEEEEeCCCce
Q psy14499 30 SFGRQKATGRGVFIIGSKIASKI-NLNIINSKISIQG--------FGNVGSVAANLFFKAGAKIVAIQDDKTT 93 (262)
Q Consensus 30 ~~~~~~aTg~Gv~~~~~~~~~~~-g~~l~~~~v~IqG--------fG~VG~~~a~~L~~~g~~vv~V~D~~G~ 93 (262)
--++...|-|....+.+.+.+.. ...++...|.|-| .|.-...+.+.|.+.|.+|+.|.|..-.
T Consensus 44 ~kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpi 116 (132)
T PRK09607 44 KADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPI 116 (132)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCC
Confidence 34677889888888888877654 4467889999999 7788888999999999999999995433
No 491
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=85.90 E-value=2.9 Score=36.35 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~-~~~ 43 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVV-LSA 43 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEE-EEe
Confidence 3578899999995 8999999999999999987 445
No 492
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.81 E-value=2.8 Score=36.71 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|++++ +.+
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv-~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIV-FND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEe
Confidence 678899999986 7899999999999999988 555
No 493
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=85.81 E-value=6.2 Score=36.12 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEE
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V 87 (262)
.+.+|+|.|.|.+|..++++++.+|++++++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~ 195 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVM 195 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEE
Confidence 5889999999999999999999999998754
No 494
>PRK09126 hypothetical protein; Provisional
Probab=85.80 E-value=1.2 Score=41.49 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
+..+|+|+|.|..|..+|..|.+.|.+|+ |.|+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~-v~E~~ 35 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVT-LIERQ 35 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEE-EEeCC
Confidence 45689999999999999999999999988 88864
No 495
>PRK08703 short chain dehydrogenase; Provisional
Probab=85.78 E-value=1.7 Score=37.41 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~ 36 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILV 36 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 478899999996 889999999999999998844
No 496
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=85.78 E-value=5.2 Score=37.41 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=45.6
Q ss_pred ecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC--HHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFG--NVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 21 tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG--~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+.|+-.+++...-+.=+..=++.+. ++.|.+++|++|+++|-+ +|..+++..+..+|+.+. ++-.
T Consensus 122 ~~vPVINa~~~~~HPtQaL~Dl~Ti~---e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~-~~~P 189 (334)
T PRK01713 122 AGVPVFNGLTDEFHPTQMLADVLTMI---ENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVR-ICAP 189 (334)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHH---HHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEE-EECC
Confidence 45788777664433333333333333 345657899999999986 689999999999999987 5544
No 497
>PRK06500 short chain dehydrogenase; Provisional
Probab=85.74 E-value=3.3 Score=35.58 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
.+++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 357889999996 899999999999999998844
No 498
>PRK06139 short chain dehydrogenase; Provisional
Probab=85.72 E-value=2.6 Score=38.99 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +++
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vv-l~~ 38 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLV-LAA 38 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEE-EEE
Confidence 578899999997 8899999999999999988 444
No 499
>PRK07326 short chain dehydrogenase; Provisional
Probab=85.69 E-value=2.9 Score=35.66 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
+++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 56789999985 999999999999999998844
No 500
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.66 E-value=1.3 Score=42.60 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=27.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|.|+|+|..|..+|++|.+.|++|. ++|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~-~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVV-VSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEE-EECC
Confidence 68999999999999999999999977 7884
Done!