RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14499
(262 letters)
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 399 bits (1028), Expect = e-140
Identities = 134/262 (51%), Positives = 187/262 (71%), Gaps = 1/262 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS T+PG+VTGKPI++GGS GR+ ATGRGVFI + A KI L + ++
Sbjct: 178 MAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAAAEKIGLQVEGAR 237
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
++IQGFGNVG+ AA F GA++VA+QD T+YN G + L ++V ++ + +
Sbjct: 238 VAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPK 297
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E + + +FW +P + L+PAA+E QIT NA + A+I+ EGANGPTT ADDIL +KG
Sbjct: 298 AEPL-PAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTTPAADDILLEKG 356
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+++ PDVI NAGGV VSYFEWVQ+ ++ WTE+EIN RL ++ NAF+A+W++A KK+
Sbjct: 357 VLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEAVWQVAQEKKIP 416
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAA+++ TRVL+A RGL
Sbjct: 417 LRTAAYVVAATRVLEARALRGL 438
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 393 bits (1012), Expect = e-138
Identities = 109/263 (41%), Positives = 167/263 (63%), Gaps = 2/263 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
++W MD Y +T+ GIVTGKP+ +GGS GR++ATGRGV + + ++ +
Sbjct: 152 IAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKAT 211
Query: 61 ISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 119
+++QGFGNVG AA L + G+K+VA+ D + IYNP GF++ +L +Y ++ +
Sbjct: 212 VAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYP 271
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+GE+I ++E + DIL+PAA+E I NA + AK ++EGANGPTT EAD+IL +
Sbjct: 272 KGERI-TNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRR 330
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
GI++ PD++ NAGGV VSYFEWVQ+L + W ++ L ++ AF+ + ++ V
Sbjct: 331 GILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNV 390
Query: 240 SLRTAAFIIGCTRVLQAHKTRGL 262
+RTAA+I+ RV A K RG+
Sbjct: 391 DMRTAAYILAIDRVAYATKKRGI 413
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 391 bits (1008), Expect = e-137
Identities = 110/262 (41%), Positives = 165/262 (62%), Gaps = 2/262 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMD YS + + PG +TGKP+ +GGS GR+ AT +GV I + K + + N++
Sbjct: 164 MAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVTICIEEAVKKKGIKLQNAR 223
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
I IQGFGN GS A AGAK++ I D +YNP+G +IP L + +
Sbjct: 224 IIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNL-F 282
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
+ I ++E CDIL+PAAI +QIT NA+N+ A I++E ANGPTT +A IL ++G
Sbjct: 283 TDVI-TNEELLEKDCDILVPAAISNQITAKNAHNIQASIVVERANGPTTIDATKILNERG 341
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
++L PD++ +AGGV VSYFEWVQN W+E+E+ +L +++ ++F+ I++ A T KV
Sbjct: 342 VLLVPDILASAGGVTVSYFEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKVD 401
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
+R AA++ G + +A + RG
Sbjct: 402 MRLAAYMTGIRKSAEASRFRGW 423
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 388 bits (999), Expect = e-136
Identities = 101/268 (37%), Positives = 152/268 (56%), Gaps = 6/268 (2%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WM+D YS K Y +PG+ T KP + G+ R+ ATG GV + ++A K+ I
Sbjct: 153 MAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVAVATREMAKKLWGGIEGKT 212
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI----- 115
++IQG GNVG A K GAK++A+ D Y G N+ +QK T
Sbjct: 213 VAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELF 272
Query: 116 KDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDI 175
+ E + + + + DI +PAAIE+ I +NA V A++++EGANGPTT EA+ I
Sbjct: 273 TTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAERI 332
Query: 176 LRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELAN 235
L ++G+++ PD++ NAGGVI+SY EWV+NL +W E+E RL NI+ N + +++
Sbjct: 333 LYERGVVVVPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVYKRWQ 392
Query: 236 T-KKVSLRTAAFIIGCTRVLQAHKTRGL 262
K ++R AA + R+ A K RG
Sbjct: 393 REKGWTMRDAAIVTALERIYNAMKIRGW 420
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 387 bits (996), Expect = e-135
Identities = 99/268 (36%), Positives = 153/268 (57%), Gaps = 7/268 (2%)
Query: 1 MSWMMDTYSTKKNYTI-PGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINS 59
MSW +D Y + G TGKP++ GGS GR +ATG GV ++ + A + + + ++
Sbjct: 154 MSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVAVVVRESAKRFGIKMEDA 213
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT-----TIYNPNGFNIPKLQKYVTFTRS 114
KI++QGFGNVG+ + G K+ AI + +YN NG + +L Y ++
Sbjct: 214 KIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKT 273
Query: 115 IKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADD 174
+ F E+I +EFW+ DI++PAA+E+ IT A + AK++ E ANGPTT E D
Sbjct: 274 LIGFPGAERI-TDEEFWTKEYDIIVPAALENVITGERAKTINAKLVCEAANGPTTPEGDK 332
Query: 175 ILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELA 234
+L ++GI L PD++TN+GGV+VSY+EWVQN WTE E+ + + A ++ +A
Sbjct: 333 VLTERGINLTPDILTNSGGVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVA 392
Query: 235 NTKKVSLRTAAFIIGCTRVLQAHKTRGL 262
+ V+LR A ++ + A K RG
Sbjct: 393 DEYNVTLREAVYMYAIKSIDVAMKLRGW 420
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 387 bits (996), Expect = e-135
Identities = 79/262 (30%), Positives = 139/262 (53%), Gaps = 5/262 (1%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+W+MDTYS T+PG+VTGKP ++GGS GR A G G ++ +A + L++ ++
Sbjct: 161 MAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGALLVLEALAKRRGLDLRGAR 220
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+ +QG G VG+ A + G ++VA+ +Y P G ++ ++ T S+ +
Sbjct: 221 VVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL 280
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
+E + + ++L+ AA E + + A V A+ ++E AN EA+ L KG
Sbjct: 281 -----APEEVFGLEAEVLVLAAREGALDGDRARQVQAQAVVEVANFGLNPEAEAYLLGKG 335
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
++ PD+++ GG++ SY EWVQ+L+ W+ +E+ R + DA+ A +
Sbjct: 336 ALVVPDLLSGGGGLLASYLEWVQDLNMFFWSPEEVRERFETRVARVVDAVCRRAERGGLD 395
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LR A + R+ +A + RG+
Sbjct: 396 LRMGALALALERLDEATRLRGV 417
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 383 bits (986), Expect = e-134
Identities = 116/265 (43%), Positives = 161/265 (60%), Gaps = 5/265 (1%)
Query: 1 MSWMMDTYSTKKNYTIP--GIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNII- 57
M+WMMD Y T P GI+TGKP+SIGGS GR +AT RG + A + + +
Sbjct: 152 MAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARGASYTIREAAKVLGWDTLK 211
Query: 58 NSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116
I+IQG+GN G A + + G K+VA+ D K IYNP+G N ++ K+ S+K
Sbjct: 212 GKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVK 271
Query: 117 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDIL 176
DF I ++E + D+L PAAIE+ IT NA+N+ AKI+ E ANGP T EAD+IL
Sbjct: 272 DFPGATNI-TNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEIL 330
Query: 177 RDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT 236
+KGI+ PD + NAGGV VSYFEWVQN++ WT +E+ RL+ + AF ++ +A
Sbjct: 331 FEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKE 390
Query: 237 KKVSLRTAAFIIGCTRVLQAHKTRG 261
K + +R AA+++ RV QA RG
Sbjct: 391 KNIHMRDAAYVVAVQRVYQAMLDRG 415
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 347 bits (892), Expect = e-118
Identities = 97/325 (29%), Positives = 143/325 (44%), Gaps = 65/325 (20%)
Query: 1 MSWMMDTYSTKKNY---TIPGIVTGKPISIGGSFGRQKATGRGVFII--------GSKIA 49
MSW+ DTY++ + VTGKPIS GG GR ATGRGVF
Sbjct: 176 MSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSI 235
Query: 50 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109
+ + +QGFGNVG + + GAK + + + +I+NP+G + +L+ +
Sbjct: 236 LGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFK 295
Query: 110 TFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTT 169
+I F + + + CDILIPAA E Q+T +NA V AKII EGANGPTT
Sbjct: 296 LQHGTILGFPKAKIYEG--SILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTT 353
Query: 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQE--------------- 214
EAD I ++ I++ PD+ NAGGV VSYFEW+ NL+++ +
Sbjct: 354 PEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSV 413
Query: 215 -----------------------------------INLRLNNIICNAFDAIWELANTKK- 238
++ L + + I A
Sbjct: 414 QESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNL 473
Query: 239 -VSLRTAAFIIGCTRVLQAHKTRGL 262
+ LRTAA++ +V + + G+
Sbjct: 474 GLDLRTAAYVNAIEKVFRVYNEAGV 498
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 278 bits (714), Expect = 2e-93
Identities = 53/265 (20%), Positives = 89/265 (33%), Gaps = 38/265 (14%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKI--NLNIIN 58
M + VTG + G S T GV+ A + + ++
Sbjct: 123 MDLIHQET---------DYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEG 173
Query: 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF 118
+S+QG GNV GAK+V +K + +
Sbjct: 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVS------------------AAVAE 215
Query: 119 NEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGA-NGPTTTEADDILR 177
+ + + + CDI P A+ + + AK+I A N L
Sbjct: 216 EGADAV-APNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLH 274
Query: 178 DKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTK 237
+ GI+ APD + NAGGVI E + R++ I ++ + I+ ++
Sbjct: 275 ELGIVYAPDYVINAGGVINVADELYG------YNRTRAMKRVDGIY-DSIEKIFAISKRD 327
Query: 238 KVSLRTAAFIIGCTRVLQAHKTRGL 262
V AA + R+ + K R
Sbjct: 328 GVPSYVAADRMAEERIAKVAKARSQ 352
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 277 bits (711), Expect = 4e-93
Identities = 61/263 (23%), Positives = 101/263 (38%), Gaps = 37/263 (14%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNII-NS 59
M + DT V G+ + GG+ T GVF + L +
Sbjct: 126 MDTLNDTTE---------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGL 176
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 119
+ +QG G VG A+L +AGA+++ D + + +
Sbjct: 177 TVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-------------- 222
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTE-ADDILRD 178
++ S PCD+ P A+ IT A + ++ AN E A DIL
Sbjct: 223 ------ALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHA 276
Query: 179 KGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKK 238
+GI+ APD + NAGG I + L W+E ++ R I + + ++E+++
Sbjct: 277 RGILYAPDFVANAGGAI-----HLVGREVLGWSESVVHERAVAIG-DTLNQVFEISDNDG 330
Query: 239 VSLRTAAFIIGCTRVLQAHKTRG 261
V+ AA + R +A T
Sbjct: 331 VTPDEAARTLAGRRAREASTTTA 353
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 257 bits (658), Expect = 6e-84
Identities = 78/275 (28%), Positives = 128/275 (46%), Gaps = 13/275 (4%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
+ +M Y G++TGK S GGS R +ATG G + N ++
Sbjct: 173 IGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKT 232
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-----SI 115
+++ GFGNV AA + GAK V + IY+P G + Y+ R +
Sbjct: 233 VALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKV 292
Query: 116 KDFNE--GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTT 170
+D+ + G + ++ W DI++P A ++ + + A + A K +E AN PTT
Sbjct: 293 QDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTN 352
Query: 171 EADDIL-RDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229
EA L + +++AP NAGGV+VS FE QN L WT +E++ +L+ ++ + D
Sbjct: 353 EALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDG 412
Query: 230 IWELANT--KKVSLRTAAFIIGCTRVLQAHKTRGL 262
A +L A I+G ++ A +G+
Sbjct: 413 SAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGI 447
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 246 bits (631), Expect = 7e-80
Identities = 85/274 (31%), Positives = 131/274 (47%), Gaps = 13/274 (4%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
+ ++ Y KN G++TGK I GGS R +ATG GV + +N N+ N K
Sbjct: 183 IGYLFGQYKKLKNSF-EGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKK 241
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF----TRSIK 116
+ G GNV + GA ++ + D I PNGF +L + +K
Sbjct: 242 CLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLK 301
Query: 117 DFNE---GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTT 170
++ + K ++++ W+IPCDI P A +++I N+A+ K+I+EGAN PT
Sbjct: 302 EYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEINENDADLFIQNKCKMIVEGANMPTHI 361
Query: 171 EADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAI 230
+A L+ IIL P NAGGV VS E QN L WT QE +++L NI+ + ++
Sbjct: 362 KALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQWTHQETDMKLQNIMKSIYEQC 421
Query: 231 WELANT--KKVSLRTAAFIIGCTRVLQAHKTRGL 262
+ + L A I G +V + +G
Sbjct: 422 HNTSKIYLNESDLVAGANIAGFLKVADSFLEQGG 455
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 245 bits (628), Expect = 3e-79
Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 16/276 (5%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
+ ++ Y N G +TGK + GGS R +ATG G+ ++ +N+ +
Sbjct: 196 IGYLYGQYKKIVNSF-NGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQT 254
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQ-----KYVTFTRSI 115
+ G GNV K++ + D +Y PNGF L+ K R I
Sbjct: 255 AVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGR-I 313
Query: 116 KDFNE---GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTT 169
K++ K +++ W +PC + P A ++ + ++ A + ++ EGAN P+T
Sbjct: 314 KEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPST 373
Query: 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229
+A ++ + II P NAGGV +S E QN WT + ++ +L I+ N F A
Sbjct: 374 VDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIA 433
Query: 230 IWELA---NTKKVSLRTAAFIIGCTRVLQAHKTRGL 262
E A K L+ A I G +V +++ +G
Sbjct: 434 CSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGC 469
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 236 bits (604), Expect = 6e-76
Identities = 75/272 (27%), Positives = 132/272 (48%), Gaps = 11/272 (4%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
+ +M N T + TGK +S GGS R +ATG G+ + + + +
Sbjct: 176 VGFMAGMMKKLSNNT-ACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMR 234
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR----SIK 116
+S+ G GNV A + GA+++ D T+ + +GF KL + + +
Sbjct: 235 VSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVA 294
Query: 117 DFNE--GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTE 171
D+ + G + ++ WS+P DI +P A ++++ ++ A+ + A K + EGAN PTT E
Sbjct: 295 DYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIE 354
Query: 172 ADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIW 231
A ++ + G++ AP NAGGV S E QN + L W ++++ RL++I+ + A
Sbjct: 355 ATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACV 414
Query: 232 ELANTK-KVSLRTAAFIIGCTRVLQAHKTRGL 262
E + + A I G +V A +G+
Sbjct: 415 EHGGEGEQTNYVQGANIAGFVKVADAMLAQGV 446
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 2e-04
Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 49/158 (31%)
Query: 64 QGFGNVG---------SVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI-------PKLQK 107
QG G A +++ +A D GF+I P
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRA---------DNHFKDT-YGFSILDIVINNPV-NL 1672
Query: 108 YVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANG- 166
+ F +G++I + + ++ + ++ ++ + N + G
Sbjct: 1673 TIHFGGE-----KGKRIRE--NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 167 --------P--TTTE--ADDILRDKGIILAPDVITNAG 192
P T E A + L+ KG+I A AG
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATF--AG 1761
Score = 34.3 bits (78), Expect = 0.039
Identities = 55/306 (17%), Positives = 87/306 (28%), Gaps = 132/306 (43%)
Query: 4 M-MDTYST---------------KKNY--TIPGIVTGKPISIGGSFGRQKATGRGVFIIG 45
M MD Y T K Y +I IV P+++ FG +K G+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK--GK------ 1682
Query: 46 SKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL 105
+I N S + + + G + FK ++ +T Y F K
Sbjct: 1683 -----RIRENY--SAMIFETIVD-GKLKTEKIFKE-------INEHSTSYT---FRSEKG 1724
Query: 106 QKYVT-FT------------RSIKDFNEGEKINDSK-------EFWSIPCDILIPAA--- 142
T FT +K +G D+ E+ AA
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKS--KGLIPADATFAGHSLGEY----------AALAS 1772
Query: 143 ------IEDQI--------TINNA------NNVTAKIILEGANGPTTTEA---DDILRDK 179
IE + T+ A +I A P A + L+
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI---AINPGRVAASFSQEALQY- 1828
Query: 180 GIILAPDVITNAGGV--IVSYFEWVQNLSNLLWTEQEINLRLNNIIC----NAFDAIWEL 233
+ V G + IV+Y N+ N +Q + A D + +
Sbjct: 1829 ---VVERVGKRTGWLVEIVNY-----NVEN----QQ--------YVAAGDLRALDTVTNV 1868
Query: 234 ANTKKV 239
N K+
Sbjct: 1869 LNFIKL 1874
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold,
phosphohexomutase; 2.70A {Bacillus anthracis}
Length = 469
Score = 32.5 bits (75), Expect = 0.14
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 15/48 (31%)
Query: 71 SVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI--------P-KLQKYV 109
S+A LF A I + PNG NI P L + V
Sbjct: 208 SLAPYLFADLEADISTMGTS------PNGMNINDGVGSTHPEVLAELV 249
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne
metal-binding, phosphoprotein, structural genomics; HET:
SEP; 2.30A {Francisella tularensis subsp}
Length = 443
Score = 31.7 bits (73), Expect = 0.21
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 15/48 (31%)
Query: 71 SVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI--------P-KLQKYV 109
L K G V+I NP+G NI ++K V
Sbjct: 186 HNFEALLDKFGINYVSIAS------NPDGLNINVGCGATCVSNIKKAV 227
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 31.3 bits (70), Expect = 0.24
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAI 87
+I ++ I + G GN+ + A ++ G +IV +
Sbjct: 7 SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQV 39
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 30.6 bits (68), Expect = 0.35
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAI 87
+I+I G GN+G + F AG ++
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAGHEVTYY 48
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.59
Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 62/186 (33%)
Query: 117 DFNEGEKINDSKEFWSIPCDIL---IPAAIEDQITINNANNVTAKIILEGANGPTTTEAD 173
DF GE K DIL A +++ + ++ I+ + E D
Sbjct: 8 DFETGEHQYQYK-------DILSVFEDAFVDN-FDCKDVQDMPKSIL-------SKEEID 52
Query: 174 DIL----RDKGIILAPDVITNAGGVIVSYF---------EWV------QNLSNLLWTEQE 214
I+ G + + + +V F +++ + + T
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 215 INLRLNNIICNA-----------FDAIWELANTKKVSLRTAAFII-----GC------TR 252
I R + + N +L + LR A ++ G
Sbjct: 113 IEQR--DRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 253 VLQAHK 258
V ++K
Sbjct: 170 VCLSYK 175
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase,
phosphoglucomutase, isomerase; 2.80A {Sulfolobus
tokodaii}
Length = 455
Score = 29.8 bits (68), Expect = 0.98
Identities = 5/33 (15%), Positives = 7/33 (21%), Gaps = 6/33 (18%)
Query: 70 GSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 102
+ G KI I N +
Sbjct: 185 ALSTPLVARALGCKIYTING------NLDPLFS 211
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD;
1.90A {Archaeoglobus fulgidus}
Length = 236
Score = 29.3 bits (65), Expect = 0.99
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQD 89
+ + G+G +G A + G +I AI D
Sbjct: 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILD 31
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 28.9 bits (64), Expect = 1.2
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVA 86
+ I G G+ G + G +V
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSVVF 47
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens}
PDB: 2vq3_A*
Length = 215
Score = 28.8 bits (64), Expect = 1.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIV 85
K+ I G G+ A +G K+V
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVV 55
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 28.1 bits (62), Expect = 2.3
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIV 85
KI++ G G VG A G ++
Sbjct: 21 KIAVLGTGTVGRTMAGALADLGHEVT 46
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 28.5 bits (63), Expect = 2.3
Identities = 11/63 (17%), Positives = 25/63 (39%)
Query: 41 VFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGF 100
+F I + + I +++ I G G+ N+ + +++A DD +
Sbjct: 35 MFGIPANVREVIARRGNATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYY 94
Query: 101 NIP 103
+P
Sbjct: 95 GLP 97
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 28.4 bits (63), Expect = 2.6
Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 90 DKTTIYNPNGF------NIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI--PCDILIPA 141
+ T I+ + + K+++ T ++ F + N + + A
Sbjct: 153 ELTFIFRDFDYMGCMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAA 212
Query: 142 A 142
Sbjct: 213 F 213
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10
c.2.1.6
Length = 276
Score = 27.5 bits (60), Expect = 4.1
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAI 87
++ G G + K +I I
Sbjct: 4 VLNFVGTGTLTRFFLEC-LKDRYEIGYI 30
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker,
ancillary protein KEFF; potassium channel regulation,
domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia
coli} PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 27.4 bits (61), Expect = 5.7
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI 94
++ I GFG G + L +G K+V + D I
Sbjct: 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHI 40
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 27.1 bits (61), Expect = 6.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 47 KIASKINLNIINSKISIQGFGNVGSVAANL 76
KI+ K N I+ KISI G G +GS A L
Sbjct: 3 KISYKYNTVIMRKKISIIGAGQIGSTIALL 32
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE
AMP; 1.79A {Escherichia coli k-12}
Length = 140
Score = 26.3 bits (59), Expect = 6.5
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 65 GFGNVGSVAANLFFKAGAKIVAIQDDKTTI 94
G+G VGS+ + +V I+ +T +
Sbjct: 14 GYGRVGSLLGEKLLASDIPLVVIETSRTRV 43
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 25.7 bits (57), Expect = 9.7
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI 94
N + ++ G G G + G +++A+ ++ +
Sbjct: 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKV 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,981,829
Number of extensions: 240002
Number of successful extensions: 704
Number of sequences better than 10.0: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 66
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)