RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14499
(262 letters)
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 201 bits (512), Expect = 5e-65
Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 13/253 (5%)
Query: 23 KPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA 82
K S GGS R +ATG G + N ++ +++ GFGNV AA + GA
Sbjct: 1 KARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGA 60
Query: 83 KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-------FNEGEKINDSKEFWSIPC 135
K V + IY+P G + Y+ R+ G + ++ W
Sbjct: 61 KAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKV 120
Query: 136 DILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEADDIL-RDKGIILAPDVITNA 191
DI++P A ++ + + A + A K +E AN PTT EA L + +++AP NA
Sbjct: 121 DIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNA 180
Query: 192 GGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV--SLRTAAFIIG 249
GGV+VS FE QN L WT +E++ +L+ ++ + D A + +L A I+G
Sbjct: 181 GGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVG 240
Query: 250 CTRVLQAHKTRGL 262
++ A +G+
Sbjct: 241 FQKIADAMMAQGI 253
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 234
Score = 196 bits (499), Expect = 2e-63
Identities = 97/235 (41%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 28 GGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA-GAKIVA 86
GGS GR++ATGRGV + + ++ + +++QGFGNVG AA L + G+K+VA
Sbjct: 1 GGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA 60
Query: 87 IQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQ 146
+ D + IYNP GF++ +L +Y ++ + +GE+I ++E + DIL+PAA+E
Sbjct: 61 VSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDILVPAALEGA 119
Query: 147 ITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLS 206
I NA + AK ++EGANGPTT EAD+IL +GI++ PD++ NAGGV VSYFEWVQ+L
Sbjct: 120 IHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ 179
Query: 207 NLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRG 261
+ W ++ L ++ AF+ + ++ V +RTAA+I+ RV A K RG
Sbjct: 180 SFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 234
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 192 bits (489), Expect = 8e-62
Identities = 101/237 (42%), Positives = 142/237 (59%), Gaps = 3/237 (1%)
Query: 28 GGSFGRQKATGRGVFIIGSKIASKINLNIINSK-ISIQGFGNVGSVAA-NLFFKAGAKIV 85
GGS GR +AT RG + A + + + K I+IQG+GN G A + G K+V
Sbjct: 1 GGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVV 60
Query: 86 AIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIED 145
A+ D K IYNP+G N ++ K+ S+KDF I ++E + D+L PAAIE+
Sbjct: 61 AVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLELEVDVLAPAAIEE 119
Query: 146 QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNL 205
IT NA+N+ AKI+ E ANGP T EAD+IL +KGI+ PD + NAGGV VSYFEWVQN+
Sbjct: 120 VITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNI 179
Query: 206 SNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 262
+ WT +E+ RL+ + AF ++ +A K + +R AA+++ RV QA RG
Sbjct: 180 TGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW 236
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 189 bits (482), Expect = 5e-60
Identities = 81/291 (27%), Positives = 126/291 (43%), Gaps = 62/291 (21%)
Query: 32 GRQKATGRGVFII--------GSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK 83
GR ATGRGVF + + ++QGFGNVG + + GAK
Sbjct: 2 GRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAK 61
Query: 84 IVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 143
VA+ + +I+NP+G + +L+ + +I F + + + CDILIPAA
Sbjct: 62 CVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVDCDILIPAAS 119
Query: 144 EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQ 203
E Q+T +NA V AKII EGANGPTT +AD I ++ I++ PD+ NAGGV VSYF+ ++
Sbjct: 120 EKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILK 179
Query: 204 NLSNLLWTEQE------------------------------------------------- 214
NL+++ +
Sbjct: 180 NLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKD 239
Query: 215 -INLRLNNIICNAFDAIWELAN--TKKVSLRTAAFIIGCTRVLQAHKTRGL 262
++ L + + I A + LRTAA++ +V + + G+
Sbjct: 240 IVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV 290
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 187 bits (475), Expect = 1e-59
Identities = 88/239 (36%), Positives = 134/239 (56%), Gaps = 6/239 (2%)
Query: 29 GSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88
G+ R+ ATG GV + ++A K+ I ++IQG GNVG A K GAK++A+
Sbjct: 2 GNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS 61
Query: 89 DDKTTIYNPNGFNIPKLQKYVTFTRS-----IKDFNEGEKINDSKEFWSIPCDILIPAAI 143
D Y G N+ +QK T + E + + + + DI +PAAI
Sbjct: 62 DINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAI 121
Query: 144 EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQ 203
E+ I +NA V A++++EGANGPTT EA+ IL ++G+++ PD++ NAGGVI+SY EWV+
Sbjct: 122 ENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVE 181
Query: 204 NLSNLLWTEQEINLRLNNIICNAFDAIWELANT-KKVSLRTAAFIIGCTRVLQAHKTRG 261
NL +W E+E RL NI+ N + +++ K ++R AA + R+ A K RG
Sbjct: 182 NLQWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRG 240
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 167 bits (424), Expect = 4e-52
Identities = 52/244 (21%), Positives = 84/244 (34%), Gaps = 29/244 (11%)
Query: 22 GKPISIGGSFGRQKATGRGVFIIGSKIASKI--NLNIINSKISIQGFGNVGSVAANLFFK 79
G + G S T GV+ A + + ++ +S+QG GNV
Sbjct: 1 GISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNT 60
Query: 80 AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 139
GAK+V +K + EG + + CDI
Sbjct: 61 EGAKLVVTDVNKAAVSAAVAE-------------------EGADAVAPNAIYGVTCDIFA 101
Query: 140 PAAIEDQITINNANNVTAKIILEGA-NGPTTTEADDILRDKGIILAPDVITNAGGVIVSY 198
P A+ + + AK+I A N L + GI+ APD + NAGGVI
Sbjct: 102 PCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGVINVA 161
Query: 199 FEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHK 258
E + R++ I ++ + I+ ++ V AA + R+ + K
Sbjct: 162 DELYG------YNRTRAMKRVDGIY-DSIEKIFAISKRDGVPSYVAADRMAEERIAKVAK 214
Query: 259 TRGL 262
R
Sbjct: 215 ARSQ 218
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 126 bits (317), Expect = 2e-36
Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 28/223 (12%)
Query: 36 ATGRGVFIIGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI 94
T GVF + L ++ + +QG G VG A+L +AGA+++ D +
Sbjct: 4 TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERV 63
Query: 95 YNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANN 154
+ ++ S PCD+ P A+ IT A
Sbjct: 64 AHAVALGH--------------------TAVALEDVLSTPCDVFAPCAMGGVITTEVART 103
Query: 155 VTAKIILEGANGPTTTE-ADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQ 213
+ ++ AN E A DIL +GI+ APD + NAGG I V W+E
Sbjct: 104 LDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREVLG-----WSES 158
Query: 214 EINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQA 256
++ R I + + ++E+++ V+ AA + R +A
Sbjct: 159 VVHERAVAIG-DTLNQVFEISDNDGVTPDEAARTLAGRRAREA 200
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 175
Score = 45.7 bits (108), Expect = 1e-06
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISI 27
++W MDTYS +T+ GIVTGKP+ +
Sbjct: 149 IAWYMDTYSMNVGHTVLGIVTGKPVEL 175
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 176
Score = 44.1 bits (104), Expect = 3e-06
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISI 27
M+WM+D YS K Y +PG+ T KP +
Sbjct: 150 MAWMVDEYSKIKGYNVPGVFTSKPPEL 176
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 208
Score = 44.2 bits (104), Expect = 4e-06
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 1 MSWMMDTYSTKKNY---TIPGIVTGKPISIGG 29
MSW+ DTY++ + VTGKPIS GG
Sbjct: 176 MSWIADTYASTIGHYDINAHACVTGKPISQGG 207
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 178
Score = 41.8 bits (98), Expect = 2e-05
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 1 MSWMMDTYSTKKNYTIP--GIVTGKPISI 27
M+WMMD Y T P GI+TGKP+SI
Sbjct: 150 MAWMMDEYETISRRKTPAFGIITGKPLSI 178
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 194
Score = 38.0 bits (88), Expect = 4e-04
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTG 22
+ +M Y G++TG
Sbjct: 173 IGYMYGQYRKIVGGFYNGVLTG 194
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 34.9 bits (79), Expect = 0.004
Identities = 21/123 (17%), Positives = 34/123 (27%)
Query: 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117
+ ++ G GN G A G ++A D I + + D
Sbjct: 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPD 60
Query: 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILR 177
+ K+ I + I + + IIL E ILR
Sbjct: 61 LLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILR 120
Query: 178 DKG 180
+ G
Sbjct: 121 ENG 123
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 202
Score = 35.0 bits (79), Expect = 0.005
Identities = 15/80 (18%), Positives = 27/80 (33%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 119
+ISI G G VG+V A G +++ + T I N P ++ +
Sbjct: 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQT 61
Query: 120 EGEKINDSKEFWSIPCDILI 139
+ + D+
Sbjct: 62 GRLSGTTDFKKAVLDSDVSF 81
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus
sp., M4 [TaxId: 1831]}
Length = 148
Score = 31.4 bits (71), Expect = 0.050
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 9/30 (30%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGS 30
M + DT V G+ + GG+
Sbjct: 126 MDTLNDTTE---------FVFGRSLERGGA 146
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 29.5 bits (65), Expect = 0.25
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS 114
KI++ G G +G + K G ++ + N + T +
Sbjct: 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAN 56
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 28.0 bits (62), Expect = 0.79
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI 94
SKI I GFG +G + + GA++VA+ D +
Sbjct: 1 SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIAL 36
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 27.7 bits (61), Expect = 1.1
Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 9/110 (8%)
Query: 60 KISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115
+++ G G VGS + +V + + + ++ + + + +
Sbjct: 6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKA----- 60
Query: 116 KDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGAN 165
K + + P + D + K + G +
Sbjct: 61 ALAASTTKTLPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGIS 110
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 27.0 bits (59), Expect = 1.3
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 13/108 (12%)
Query: 52 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111
I + + I G G+V A L +AGA++ T
Sbjct: 6 IFCQLRDRDCLIVGGGDVAERKARLLLEAGARL-------TVNALTFIPQFTVWANEGML 58
Query: 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-----EDQITINNANN 154
T F+E ++ + D + + +I N +
Sbjct: 59 TLVEGPFDE-TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVVDA 105
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 27.8 bits (61), Expect = 1.7
Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 8/132 (6%)
Query: 58 NSKISIQGFGNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPN---GFNIPKLQKYVTFT- 112
K+ + G G +G +G +I I D + N N F + +
Sbjct: 37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVA 96
Query: 113 -RSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTE 171
+ D + D I + + + I E
Sbjct: 97 AEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF--HIIVCGLDSIIARRWINGMLISLLNYE 154
Query: 172 ADDILRDKGIIL 183
+ + L
Sbjct: 155 DGVLDPSSIVPL 166
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 136
Score = 26.5 bits (58), Expect = 1.8
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 51 KINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110
++L+I+N+ + G G +V A I DD+ I + +++ +
Sbjct: 4 ALDLHILNANLDPDGTGARSAVTAEGTT-IAPLITGNIDDRFQINVIDQLTDANMRRATS 62
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 150
Score = 26.7 bits (58), Expect = 2.3
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 52 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAI 87
+ + + +I + G G VG G K+ +
Sbjct: 7 LAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLV 42
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 26.7 bits (58), Expect = 2.3
Identities = 9/89 (10%), Positives = 22/89 (24%), Gaps = 6/89 (6%)
Query: 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF 118
+K + G G G+ A + K ++ N + ++
Sbjct: 8 NKAVVFGSGAFGTALAMVLSKKCREVCVW------HMNEEEVRLVNEKRENVLFLKGVQL 61
Query: 119 NEGEKINDSKEFWSIPCDILIPAAIEDQI 147
E +I++ +
Sbjct: 62 ASNITFTSDVEKAYNGAEIILFVIPTQFL 90
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 26.0 bits (56), Expect = 2.8
Identities = 6/63 (9%), Positives = 20/63 (31%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 119
+ ++ G G G + G +++A+ ++ + + + T +
Sbjct: 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLG 61
Query: 120 EGE 122
Sbjct: 62 IRN 64
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 26.2 bits (57), Expect = 2.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQD 89
K+ I GFG +G + G ++ I D
Sbjct: 2 KVGINGFGRIGRQVFRILHSRGVEVALIND 31
>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707
[TaxId: 1416]}
Length = 394
Score = 26.9 bits (58), Expect = 3.1
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 189 TNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIW 231
TN G ++ YFEW W +N +N+ A+W
Sbjct: 1 TN--GTMMQYFEWYLPNDGNHW--NRLNSDASNLKSKGITAVW 39
>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 393
Score = 26.9 bits (58), Expect = 3.1
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 193 GVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIW 231
G ++ YFEW LW ++ NN+ A+W
Sbjct: 6 GTMMQYFEWYLPDDGTLW--TKVANEANNLSSLGITALW 42
>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon
Pyrococcus woesei [TaxId: 2262]}
Length = 361
Score = 26.4 bits (57), Expect = 3.7
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 192 GGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIW 231
GGVI+ F W + W I ++ AIW
Sbjct: 9 GGVIMQAFYWDVPGGGIWW--DHIRSKIPEWYEAGISAIW 46
>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp.,
ksm-k38 [TaxId: 1409]}
Length = 390
Score = 26.2 bits (56), Expect = 4.9
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 193 GVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIW 231
G ++ Y+EW W ++ + AIW
Sbjct: 5 GTMMQYYEWHLENDGQHW--NRLHDDAAALSDAGITAIW 41
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 25.4 bits (55), Expect = 4.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89
+KI + G G +G V A L + V + D
Sbjct: 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFD 34
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 25.8 bits (55), Expect = 5.2
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAI---QDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116
+SI G G +GS + G ++ D + G P+L +
Sbjct: 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFW 61
Query: 117 DFNEGEKINDSKEFWSIPC 135
+ + +++
Sbjct: 62 PEQLEKCLENAEVVLLGVS 80
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 25.5 bits (54), Expect = 5.2
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIY 95
KI + G G +G+ A + G ++ + ++T
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCE 37
>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419
{Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 25.7 bits (56), Expect = 5.4
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 23/89 (25%)
Query: 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 92
+ A + + G + +G + +L + +
Sbjct: 195 VELAKENNLVVFGDDGSPA-----------------LGGLLVDLVRLGKIALDRK--EFG 235
Query: 93 TIYNPNGFNI----PKLQKYVTFTRSIKD 117
T+Y N F + P +K + + +
Sbjct: 236 TVYPVNAFYMKNPGPAEEKNIPRIIAYEK 264
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 132
Score = 25.3 bits (54), Expect = 5.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91
I I G G VG A + G IV I DK
Sbjct: 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 25.4 bits (55), Expect = 6.3
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 60 KISIQGFGNVG-SVAANLFFKAGAKIVAIQD 89
K+ I GFG +G +V ++VA+ D
Sbjct: 3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND 33
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 25.0 bits (54), Expect = 8.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 60 KISIQGFGNVG-SVAANLFFKAGAKIVAIQD 89
K+ I GFG +G V F + ++VAI D
Sbjct: 2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND 32
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 24.9 bits (54), Expect = 8.9
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 60 KISIQGFGNVG-SVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF 118
K+ + G+G +G VA + + +++ I + + Y I F
Sbjct: 4 KVGVNGYGTIGKRVAYAVTKQDDMELIGI-TKTKPDFEAYRAKELGIPVYAASEEFIPRF 62
Query: 119 NEGEKINDSKEFWSIP-CDILI 139
+ + DI++
Sbjct: 63 EKEGFEVAGTLNDLLEKVDIIV 84
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 24.4 bits (53), Expect = 9.5
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 63 IQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIY---NPNGFNIPKLQKYV 109
+QGF N + +N G K + ++ D +IY + G + ++ V
Sbjct: 46 VQGFDNPAGLQSNGLHIQGQKFMLLRADDRSIYGRHDAEGVVCVRTKQTV 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 968,984
Number of extensions: 44733
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 68
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)