BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy145
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FLO|A Chain A, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|C Chain C, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|E Chain E, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|G Chain G, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
Length = 460
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 57 LVPFLFGDTT-----EITAIGRIVCD--TSDGKLNAASVLLEGDEVTSGGRSISLKLPET 109
L P F D T EI A+GRIV D T D LN S+ LE + GR + L L +
Sbjct: 33 LSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQV 92
Query: 110 G-VAVFPGQIVAARGSNPSRNQFIATKI----YSDASLPLSETRPALDQNTEMYKLRV 162
++ F GQIVA +G N + + F I Y ++ + S+ N E L+V
Sbjct: 93 NELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKV 150
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 35 SNLSQFNAIIGLGTV--TIGDITLLVPFLFGDTTEITAIGRIVCDTS----DGKLNAASV 88
SNLSQ +GLG + D+ V FLFGD ++T ++V D + L+ SV
Sbjct: 840 SNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSV 899
Query: 89 LLEGDEVTSGGRSISLKLPETGVAVFPGQI 118
+ +G L PE+ V+ F G+I
Sbjct: 900 ITDG---------YKLDFPESVVSFFKGEI 920
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 35 SNLSQFNAIIGLGTV--TIGDITLLVPFLFGDTTEITAIGRIVCDTS----DGKLNAASV 88
SNLSQ +GLG + D+ V FLFGD ++T ++V D + L+ SV
Sbjct: 840 SNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSV 899
Query: 89 LLEGDEVTSGGRSISLKLPETGVAVFPGQI 118
+ +G L PE+ V+ F G+I
Sbjct: 900 ITDG---------YKLDFPESVVSFFKGEI 920
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 35 SNLSQFNAIIGLGTV--TIGDITLLVPFLFGDTTEITAIGRIVCDTS----DGKLNAASV 88
SNLSQ +GLG + D+ V FLFGD ++T ++V D + L+ SV
Sbjct: 863 SNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSV 922
Query: 89 LLEGDEVTSGGRSISLKLPETGVAVFPGQI 118
+ +G L PE+ V+ F G+I
Sbjct: 923 ITDG---------YKLDFPESVVSFFKGEI 943
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 35 SNLSQFNAIIGLGTV--TIGDITLLVPFLFGDTTEITAIGRIVCDTS----DGKLNAASV 88
SNLSQ +GLG + D+ V FLFGD ++T ++V D + L+ SV
Sbjct: 863 SNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSV 922
Query: 89 LLEGDEVTSGGRSISLKLPETGVAVFPGQI 118
+ +G L PE+ V+ F G+I
Sbjct: 923 ITDG---------YKLDFPESVVSFFKGEI 943
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 35 SNLSQFNAIIGLGTV--TIGDITLLVPFLFGDTTEITAIGRIVCDTS----DGKLNAASV 88
SNLSQ +GLG + D+ V FLFGD ++T ++V D + L+ SV
Sbjct: 863 SNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSV 922
Query: 89 LLEGDEVTSGGRSISLKLPETGVAVFPGQI 118
+ +G L PE+ V+ F G+I
Sbjct: 923 ITDG---------YKLDFPESVVSFFKGEI 943
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 35 SNLSQFNAIIGLGTV--TIGDITLLVPFLFGDTTEITAIGRIVCDTS----DGKLNAASV 88
SNLSQ +GLG + D+ V FLFGD ++T ++V D + L+ SV
Sbjct: 863 SNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSV 922
Query: 89 LLEGDEVTSGGRSISLKLPETGVAVFPGQI 118
+ +G L PE+ V+ F G+I
Sbjct: 923 ITDG---------YKLDFPESVVSFFKGEI 943
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 35 SNLSQFNAIIGLGTV--TIGDITLLVPFLFGDTTEITAIGRIVCDTS----DGKLNAASV 88
SNLSQ +GLG + D+ V FLFGD ++ ++V D + L+ SV
Sbjct: 840 SNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVAPSSKVVGDMALYMVQNDLDEQSV 899
Query: 89 LLEGDEVTSGGRSISLKLPETGVAVFPGQI 118
+ +G L PE+ V+ F G+I
Sbjct: 900 ITDG---------YKLDFPESVVSFFKGEI 920
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 57 LVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGR---SISLKLPETGVAV 113
L P L GD + +SD AA+ ++EGDEV GR S + P+ V +
Sbjct: 134 LEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWWSTGVGHPDCKVII 193
Query: 114 FPG 116
F G
Sbjct: 194 FMG 196
>pdb|3LVT|A Chain A, The Crystal Structure Of A Protein In The Glycosyl
Hydrolase Family 38 From Enterococcus Faecalis To 2.55a
Length = 899
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 103 SLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETR 148
S L + F G ++A +N N+FI KI ++ SL +++ +
Sbjct: 506 SFALIQGETKAFEGSLLAQPATNEXENEFIQVKIENNGSLTIADKK 551
>pdb|4GNR|A Chain A, 1.0 Angstrom Resolution Crystal Structure Of The
Branched-Chain Amino Acid Transporter Substrate Binding
Protein Livj From Streptococcus Pneumoniae Str. Canada
Mdr_19a In Complex With Isoleucine
Length = 353
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 60 FLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIV 119
+LF T + + G+I+ + KLNA V+L D + + I+ E+ + G+IV
Sbjct: 118 YLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFRES----YKGEIV 173
Query: 120 A 120
A
Sbjct: 174 A 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,964,764
Number of Sequences: 62578
Number of extensions: 231948
Number of successful extensions: 542
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 16
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)