BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy145
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14181|DPOA2_HUMAN DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2
Length = 598
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L +T +G+I CD S+GKLN SV+LEGD S G I + L E +
Sbjct: 237 IEAFTPLLAPAQEPVTLLGQIGCD-SNGKLNNKSVILEGDREHSSGAQIPVDLSELKEYS 295
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPL 144
+FPGQ+V G N + + +ATK+Y LP
Sbjct: 296 LFPGQVVIMEGINTTGRKLVATKLYEGVPLPF 327
>sp|Q58D13|DPOA2_BOVIN DNA polymerase alpha subunit B OS=Bos taurus GN=POLA2 PE=2 SV=1
Length = 604
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L +T +G+I CD S+GKLN SV+LEGD S G I + L E +
Sbjct: 239 IEAFAPILVPAQEPVTLLGQIGCD-SNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYS 297
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSE 146
+FPGQ+V G N + + +AT++Y LP +
Sbjct: 298 LFPGQVVVMEGINTTGRKLVATRLYEGVPLPFHQ 331
>sp|P33611|DPOA2_MOUSE DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2
Length = 600
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L + +G+I CD S+GKLN+ SV+LEGD+ S G I + L E +
Sbjct: 237 IEAFTPLLVPAQEPVILLGQIGCD-SNGKLNSKSVILEGDQEHSYGAQIPVDLSELKEYS 295
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSE 146
+FPGQ+V G N + + ATK+Y LP +
Sbjct: 296 LFPGQVVIMEGFNTTGRRLTATKLYEGVPLPFYQ 329
>sp|O89043|DPOA2_RAT DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=2
SV=2
Length = 600
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE-TGVA 112
I P L + +G+I CD S+G+LN+ SV+LEGD S G I + + E +
Sbjct: 237 IEAFTPLLVPAQEPVILLGQIGCD-SNGRLNSKSVILEGDREHSSGAQIPVDVSELKDYS 295
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPL 144
+FPGQ+V G N + + ATK+Y LP
Sbjct: 296 LFPGQVVIMEGFNTTGRRLTATKLYEGVPLPF 327
>sp|O74946|DPOA2_SCHPO DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pol12 PE=1 SV=1
Length = 574
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 81 GKLNAASVLLEGDEVTSGGRSISLKLPET-GVAVFPGQIVAARGSNPSRNQFIATK 135
G+LN S+LLE G + LK+ + ++FPGQIV+ +GSNPS N FIA +
Sbjct: 220 GRLNQNSILLESSRRLGAGVRVRLKVDDLPSYSIFPGQIVSVKGSNPSGNMFIAKE 275
>sp|P38121|DPOA2_YEAST DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=POL12 PE=1 SV=1
Length = 705
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 57 LVPFLFGDTT-----EITAIGRIVCD--TSDGKLNAASVLLEGDEVTSGGRSISLKLPET 109
L P F D T EI A+GRIV D T D LN S+ LE + GR + L L +
Sbjct: 278 LSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQV 337
Query: 110 G-VAVFPGQIVAARGSNPSRNQFIATKI----YSDASLPLSETRPALDQNTEMYKLRV 162
++ F GQIVA +G N + + F I Y ++ + S+ N E L+V
Sbjct: 338 NELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKV 395
>sp|Q21625|DPOA2_CAEEL DNA polymerase alpha subunit B OS=Caenorhabditis elegans GN=div-1
PE=3 SV=3
Length = 581
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 111 VAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLS 145
+ +FPGQI+A RG+N + + KI+ A+LP++
Sbjct: 279 ITLFPGQIIAVRGTNETGEELQVDKIFQPAALPVN 313
>sp|Q9Z6U5|PMP21_CHLPN Probable outer membrane protein pmp21 OS=Chlamydia pneumoniae
GN=pmp21 PE=2 SV=1
Length = 1609
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 47 GTVTI----GDITLLVPFLFGDTTEITAIGRIVCDTS-DGKLNAASVLLEGDEVTSGGRS 101
G+VTI G+I F+FG + + G I+ ++S + + NA +L
Sbjct: 830 GSVTICGNQGNIAFKENFVFGSENQRSGGGAIIANSSVNIQDNAGDILF----------- 878
Query: 102 ISLKLPETGVAVFPGQIVAARGSNP 126
+S G A+F G +VA+ GSNP
Sbjct: 879 VSNSTGSYGGAIFVGSLVASEGSNP 903
>sp|Q9VB62|DPOA2_DROME DNA polymerase alpha subunit B OS=Drosophila melanogaster
GN=DNApol-alpha73 PE=1 SV=2
Length = 609
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 68 ITAIGRIVCDTSDGKLNAASV---LLEGDEVTSGGRSISLKLPETGVA-VFPGQIVAARG 123
+ A+G I + DG L+A S +L+ D +++L A +FPGQ+V A+G
Sbjct: 271 LHAVGMIHSE-DDGPLDAHSAFMAVLDDDVEDEMDPTLTLNFSRVKSASIFPGQVVLAKG 329
Query: 124 SNPSRNQFIATKIYSDASL 142
P F+ +I+++ L
Sbjct: 330 FIPRGKTFMVEEIHTERKL 348
>sp|Q6CMM2|MAD1_KLULA Spindle assembly checkpoint component MAD1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=MAD1 PE=3 SV=1
Length = 648
Score = 31.6 bits (70), Expect = 4.2, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 1 MSDRMSNQMKSVLDKIRPEWES 22
++D SN +KS LDK+ PEWE+
Sbjct: 598 IADLQSNTLKSDLDKVIPEWET 619
>sp|A5W965|SFSA_PSEP1 Sugar fermentation stimulation protein homolog OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=sfsA PE=3 SV=1
Length = 237
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 20/162 (12%)
Query: 20 WESNPQPSAYRIPWISNLSQFNAIIGLGTVTIGDITLLVPFLFGDTTEITAIGRIVCDTS 79
WE + P R+ + N + NA++ + G IT LV F TA+ R V
Sbjct: 67 WEISETPQG-RLACV-NTGRANALVE-EALRAGTITELVGF--------TALKREVAYGE 115
Query: 80 DGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNP-------SRNQFI 132
+G + EG +S++L P+T VA FP V RG+ +R
Sbjct: 116 EGSRIDFRLEFEGAPAYVEVKSVTLGYPDTAVAAFP-DAVTQRGAKHLRELAKLARQGVR 174
Query: 133 ATKIYSDASLPLSETRPALDQNTEMYK-LRVSYEKGLPLADY 173
A ++Y + RPA + +T + LR + G+ + Y
Sbjct: 175 AVQLYCVNLTGIDAVRPAEEIDTAYAQALRAAVADGVEVLAY 216
>sp|Q4QLG3|MURE_HAEI8 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Haemophilus influenzae (strain 86-028NP)
GN=murE PE=3 SV=1
Length = 488
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 119 VAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGLPLADYLVNVF 178
VA +G NQFI + ++S AS +SET + + T + V K LA +L ++
Sbjct: 36 VAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLA 95
Query: 179 EKSYNS 184
+ Y+S
Sbjct: 96 DVFYDS 101
>sp|P45060|MURE_HAEIN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=murE PE=3 SV=1
Length = 488
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 119 VAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGLPLADYLVNVF 178
VA +G NQFI + ++S AS +SET + + T + V K LA +L ++
Sbjct: 36 VAIKGHQVDGNQFIDSALHSGASAVVSETELSSEHLTVAFIGNVPVVKYYQLAHHLSSLA 95
Query: 179 EKSYNS 184
+ Y+S
Sbjct: 96 DVFYDS 101
>sp|O75718|CRTAP_HUMAN Cartilage-associated protein OS=Homo sapiens GN=CRTAP PE=1 SV=1
Length = 401
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 74/185 (40%), Gaps = 19/185 (10%)
Query: 18 PEWESNPQPSAYRIPWISNLSQFNAIIGLGTVTIGDITLLVPFLFGDTTEITAIGRIVCD 77
P E P SAYR L +++ +V +I+L + L D+ A C
Sbjct: 37 PRDELMPLESAYR----HALDKYSGEHWAESVGYLEISLRLHRLLRDSE---AFCHRNCS 89
Query: 78 TSDGKLNAASVLLEGDEVTSGG---RSISLKLPETGVAVF----PGQIVAARGSNPSRNQ 130
+ AA + + GG R+ LK + G+ F P + V A +
Sbjct: 90 AAPQPEPAAGLASYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYK 149
Query: 131 FIATKIYSDASLP----LSETRPALDQNTEMYKLRVSYEKGLPLA-DYLVNVFEKSYNSA 185
F+ + +LP + T + EM K ++Y K LP A DY+ ++ KSY S
Sbjct: 150 FLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPGAEDYIKDLETKSYESL 209
Query: 186 FITTV 190
FI V
Sbjct: 210 FIRAV 214
>sp|B0TTL6|F16PA_SHEHH Fructose-1,6-bisphosphatase class 1 OS=Shewanella halifaxensis
(strain HAW-EB4) GN=fbp PE=3 SV=1
Length = 329
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 81 GKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIYSDA 140
G+L S L G + G L P T +A+ GQ V NP NQF+
Sbjct: 129 GELTEKSFLQAGHNQVAAG--YVLYGPSTMLALTTGQGVQLFTLNPETNQFL-------- 178
Query: 141 SLPLSETRPALDQNTEMYKLRVSYEK--GLPLADYLVNVF-------EKSYNSAFITT-V 190
L+ A+ ++T + + +S ++ P+ Y+ ++ EKS+N +I V
Sbjct: 179 ---LTNAAMAVSKDTGEFAINMSNQRFWEAPMQTYISDLLLGKIGPREKSFNMRWIAAMV 235
Query: 191 ADFHRAGSSG 200
D HR G
Sbjct: 236 GDVHRVLCRG 245
>sp|A1RNR2|F16PA_SHESW Fructose-1,6-bisphosphatase class 1 OS=Shewanella sp. (strain
W3-18-1) GN=fbp PE=3 SV=1
Length = 330
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 23/132 (17%)
Query: 79 SDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIYS 138
S G+L S L G + G L P T +A+ GQ V +P N+F+ T
Sbjct: 127 SAGELTETSFLQSGRNQLAAG--YVLYGPSTMLALTTGQGVQLFTLHPETNEFLLT---- 180
Query: 139 DASLPLSETRPALDQNTEMYKLRVSYEK--GLPLADYLVNVF-------EKSYNSAFITT 189
+A++ +S +T+ + + +S ++ P+ Y+ ++ EKS+N +I
Sbjct: 181 NAAMSISA-------DTQEFAINMSNQRFWEAPMQTYIADLLLGKIGPREKSFNMRWIAA 233
Query: 190 -VADFHRAGSSG 200
V D HR S G
Sbjct: 234 MVGDVHRVLSRG 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,415,352
Number of Sequences: 539616
Number of extensions: 2914502
Number of successful extensions: 7565
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 7547
Number of HSP's gapped (non-prelim): 34
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)